BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029987
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JJW6|REFP2_MOUSE RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2
PE=1 SV=1
Length = 218
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 72/139 (51%), Gaps = 28/139 (20%)
Query: 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPLSNAR 60
MA +DMSLDDIIK R Q R RG G R GGR R
Sbjct: 1 MADKMDMSLDDIIKL------NRNQRRVNRGGGPRRNRPAIARGGR------------NR 42
Query: 61 PSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIREL 118
P+ Y+ R + P WQHDLF+ G G+E G KL VSNL GV++ DI+EL
Sbjct: 43 PAPYS------RPKPLPDKWQHDLFDSG--CGGGEGVETGAKLLVSNLDFGVSDADIQEL 94
Query: 119 FSEIGELKRYAIHFDKNGR 137
F+E G LK+ A+ +D++GR
Sbjct: 95 FAEFGTLKKAAVDYDRSGR 113
>sp|B5FXN8|THOC4_TAEGU THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1
Length = 254
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
Query: 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPLSN-- 58
MA +DMSLDDIIK + GR RGRG G GG G A GP+ N
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRP 60
Query: 59 --ARPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDD 114
AR + R + P WQHDLF+ A +G+E G KL VSNL GV++ D
Sbjct: 61 VMARGGGRNRPAPYSRPKQLPEKWQHDLFDSGFGAG--AGVETGGKLLVSNLDFGVSDAD 118
Query: 115 IRELFSEIGELKRYAIHFDKNGR 137
I+ELF+E G LK+ A+H+D++GR
Sbjct: 119 IQELFAEFGTLKKAAVHYDRSGR 141
>sp|Q58EA2|THO4A_XENLA THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1
Length = 256
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 10/80 (12%)
Query: 60 RPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 117
RP+ Y+ R + P WQHDLF+ A +G+E G KL VSNL GV++ DI+E
Sbjct: 73 RPTPYS------RPKQLPDKWQHDLFDSGFGAG--AGMETGGKLLVSNLDFGVSDADIQE 124
Query: 118 LFSEIGELKRYAIHFDKNGR 137
LF+E G LK+ A+H+D++GR
Sbjct: 125 LFAEFGTLKKAAVHYDRSGR 144
>sp|Q6GLW1|THO4B_XENLA THO complex subunit 4-B OS=Xenopus laevis GN=alyref-b PE=2 SV=1
Length = 256
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 10/80 (12%)
Query: 60 RPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 117
RP+ Y+ R + P WQHDLF+ +G+E G KL VSNL GV++ DI+E
Sbjct: 72 RPTPYS------RPKQLPDKWQHDLFDSGFGTG--AGMETGGKLLVSNLDFGVSDADIQE 123
Query: 118 LFSEIGELKRYAIHFDKNGR 137
LF+E G LK+ A+H+D++GR
Sbjct: 124 LFAEFGSLKKAAVHYDRSGR 143
>sp|Q28FB9|THOC4_XENTR THO complex subunit 4 OS=Xenopus tropicalis GN=alyref PE=2 SV=1
Length = 260
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 10/80 (12%)
Query: 60 RPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 117
RP+ Y+ R + P WQHDLF+ +G+E G KL VSNL GV++ DI+E
Sbjct: 76 RPAPYS------RPKQLPDKWQHDLFDSGFGTG--AGMETGGKLLVSNLDFGVSDADIQE 127
Query: 118 LFSEIGELKRYAIHFDKNGR 137
LF+E G LK+ A+H+D++GR
Sbjct: 128 LFAEFGTLKKAAVHYDRSGR 147
>sp|O08583|THOC4_MOUSE THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3
Length = 255
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 71/157 (45%), Gaps = 34/157 (21%)
Query: 1 MATHVDMSLDDIIKSRKKSERERG------------------QGRARRGRGRGRGPSGSV 42
MA +DMSLDDIIK + RG Q AR RG G
Sbjct: 1 MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRG------GGP 54
Query: 43 SGGRMTGAARRGPLSNARPSSYTIAKSFRRTRNFP--WQHDLFEDSLRAAGISGIEVGTK 100
R A RP+ Y+ R + P WQHDLF+ E G K
Sbjct: 55 MRNRPAIARGAAGGGRNRPAPYS------RPKQLPDKWQHDLFDSGFGGGAGV--ETGGK 106
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR 137
L VSNL GV++ DI+ELF+E G LK+ A+H+D++GR
Sbjct: 107 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR 143
>sp|Q86V81|THOC4_HUMAN THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3
Length = 257
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 70 FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR 127
+ R + P WQHDLF+ E G KL VSNL GV++ DI+ELF+E G LK+
Sbjct: 77 YSRPKQLPDKWQHDLFDSGFGGGAGV--ETGGKLLVSNLDFGVSDADIQELFAEFGTLKK 134
Query: 128 YAIHFDKNGR 137
A+H+D++GR
Sbjct: 135 AAVHYDRSGR 144
>sp|Q3T0I4|THOC4_BOVIN THO complex subunit 4 OS=Bos taurus GN=ALYREF PE=2 SV=1
Length = 257
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 70 FRRTRNFP--WQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR 127
+ R + P WQHDLF+ E G KL VSNL GV++ DI+ELF+E G LK+
Sbjct: 77 YSRPKQLPDKWQHDLFDSGFGGGAGV--ETGGKLLVSNLDFGVSDADIQELFAEFGTLKK 134
Query: 128 YAIHFDKNGR 137
A+H+D++GR
Sbjct: 135 AAVHYDRSGR 144
>sp|Q9BY77|PDIP3_HUMAN Polymerase delta-interacting protein 3 OS=Homo sapiens GN=POLDIP3
PE=1 SV=2
Length = 421
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKR 127
GTK+ V+NLHP VT +DI ELF G LKR
Sbjct: 279 GTKMTVNNLHPRVTEEDIVELFCVCGALKR 308
>sp|Q8BG81|PDIP3_MOUSE Polymerase delta-interacting protein 3 OS=Mus musculus GN=Poldip3
PE=2 SV=1
Length = 420
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR 127
+S +E GTK+ V+NLHP VT +DI ELF G LKR
Sbjct: 274 LSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKR 308
>sp|Q9XFD1|NCBP2_ARATH Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana
GN=CBP20 PE=1 SV=1
Length = 257
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 72 RTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIH 131
R R F + F+++LRA+ T +Y+ N+ T + + ELFS GE+K+ +
Sbjct: 15 RDRRFSGTQEEFDEALRAS--------TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMG 66
Query: 132 FDKNGRPSVSSVACFATF 149
DKN + CF F
Sbjct: 67 LDKNTKTPCG--FCFVLF 82
>sp|Q1JPY8|PSPC1_DANRE Paraspeckle component 1 OS=Danio rerio GN=pspc1 PE=2 SV=1
Length = 512
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFAT 148
G L V NL P V+N+ + + FS+ G ++R + D GRP+ + FA
Sbjct: 149 GAALTVRNLSPVVSNELLEQAFSQFGPVERAIVIVDDRGRPTGKGIVEFAN 199
>sp|Q12159|YRA1_YEAST RNA annealing protein YRA1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YRA1 PE=1 SV=2
Length = 226
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 30/142 (21%)
Query: 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGP---SGSVSGGRMTGAARRGPL- 56
M+ ++D SLD+II S K G RAR G RG GP V R + RRGP+
Sbjct: 1 MSANLDKSLDEIIGSNKA-----GSNRARVGGTRGNGPRRVGKQVGSQRRSLPNRRGPIR 55
Query: 57 SNARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIR 116
N R +A R A + K+ V L + D +R
Sbjct: 56 KNTRAPPNAVA--------------------RVAKLLDTTREVKVNVEGLPRDIKQDAVR 95
Query: 117 ELF-SEIGELKRYAIHFDKNGR 137
E F S++G ++R + +++ G+
Sbjct: 96 EFFASQVGGVQRVLLSYNERGQ 117
>sp|Q09330|MLO3_SCHPO mRNA export protein mlo3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mlo3 PE=1 SV=1
Length = 199
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 53/138 (38%), Gaps = 45/138 (32%)
Query: 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPLSNAR 60
M+ +D SLD II S+ K G R+ R R P P NA+
Sbjct: 1 MSMELDQSLDAIIASKPK-------GGIRKRRARSNKPK---------------PTKNAK 38
Query: 61 PSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELF- 119
P+ T + A S I +K+ VSNL VT ++ELF
Sbjct: 39 PAVNTAS----------------------ALKSVISEESKIIVSNLPTDVTEAQVKELFV 76
Query: 120 SEIGELKRYAIHFDKNGR 137
IG KR ++ + NGR
Sbjct: 77 KSIGPCKRVSLAYGPNGR 94
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 38.1 bits (87), Expect = 0.032, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFAT 148
+ LYV NL P ++++ ++E+FS G + + D NG S FAT
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFAT 367
Score = 30.8 bits (68), Expect = 5.5, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR 137
T +YV NL T+DD++ F E G++ + D G+
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK 253
>sp|B5G279|NCBP2_TAEGU Nuclear cap-binding protein subunit 2 OS=Taeniopygia guttata
GN=NCBP2 PE=2 SV=1
Length = 168
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 55 PLSNARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDD 114
LS SY +R ++F L E SL+ + + LYV NL T +
Sbjct: 8 TLSGLNSDSYCEISQYR-DQHFRGSRQLQEKSLK--------ISSTLYVGNLSFYTTEEQ 58
Query: 115 IRELFSEIGELKRYAIHFDK 134
I+ELFS+ G++KR + DK
Sbjct: 59 IQELFSKCGDVKRIVMGLDK 78
>sp|Q5ZK88|PSPC1_CHICK Paraspeckle component 1 OS=Gallus gallus GN=PSPC1 PE=2 SV=1
Length = 523
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSP 151
G L V NL P V+N+ + + FS+ G ++R + D GR + FA P
Sbjct: 154 GAALTVKNLSPVVSNELLEQAFSQFGPVERAVVVVDDRGRATGKGFVEFAAKPP 207
>sp|Q5ZKR5|NCBP2_CHICK Nuclear cap-binding protein subunit 2 OS=Gallus gallus GN=NCBP2
PE=2 SV=1
Length = 168
Score = 37.0 bits (84), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK 134
+++ + LYV NL T + I+ELFS+ G++KR + DK
Sbjct: 39 LKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDK 78
>sp|P23246|SFPQ_HUMAN Splicing factor, proline- and glutamine-rich OS=Homo sapiens
GN=SFPQ PE=1 SV=2
Length = 707
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFAT 148
L V NL P V+N+ + E FS+ G ++R + D GR + + FA+
Sbjct: 373 LSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS 420
>sp|Q9U1N0|HRP65_CHITE Hrp65 protein OS=Chironomus tentans GN=HRP65 PE=1 SV=1
Length = 535
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 80 HDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN 135
HDL E SG +LY+ NL VT ++++ELFS GE+ I+ +KN
Sbjct: 97 HDLPELVCEEIKFSG---RNRLYIGNLTSDVTEEELKELFSPYGEISEAFINAEKN 149
>sp|Q8VIJ6|SFPQ_MOUSE Splicing factor, proline- and glutamine-rich OS=Mus musculus
GN=Sfpq PE=1 SV=1
Length = 699
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFAT 148
L V NL P V+N+ + E FS+ G ++R + D GR + + FA+
Sbjct: 365 LSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFAS 412
>sp|Q1LZD9|PSPC1_BOVIN Paraspeckle component 1 OS=Bos taurus GN=PSPC1 PE=2 SV=1
Length = 520
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSP 151
G L V NL P V+N+ + + FS+ G +++ + D GR + FA P
Sbjct: 152 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPP 205
>sp|Q8WXF1|PSPC1_HUMAN Paraspeckle component 1 OS=Homo sapiens GN=PSPC1 PE=1 SV=1
Length = 523
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSP 151
G L V NL P V+N+ + + FS+ G +++ + D GR + FA P
Sbjct: 155 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPP 208
>sp|Q8R326|PSPC1_MOUSE Paraspeckle component 1 OS=Mus musculus GN=Pspc1 PE=1 SV=1
Length = 523
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSP 151
G L V NL P V+N+ + + FS+ G +++ + D GR + FA P
Sbjct: 154 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPP 207
>sp|Q4KLH4|PSPC1_RAT Paraspeckle component 1 OS=Rattus norvegicus GN=Pspc1 PE=2 SV=1
Length = 522
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSP 151
G L V NL P V+N+ + + FS+ G +++ + D GR + FA P
Sbjct: 154 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPP 207
>sp|Q99K48|NONO_MOUSE Non-POU domain-containing octamer-binding protein OS=Mus musculus
GN=Nono PE=1 SV=3
Length = 473
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 86 SLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK 134
+ R G ++L+V NL P +T +++R+LF + G+ IH DK
Sbjct: 63 NFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK 111
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFA 147
L V NL V+N+ + E FS G+++R + D GRPS + F+
Sbjct: 152 LTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFS 198
>sp|Q5RFL9|NONO_PONAB Non-POU domain-containing octamer-binding protein OS=Pongo abelii
GN=NONO PE=2 SV=3
Length = 471
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 86 SLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK 134
+ R G ++L+V NL P +T +++R+LF + G+ IH DK
Sbjct: 61 NFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK 109
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFA 147
L V NL V+N+ + E FS G+++R + D GRPS + F+
Sbjct: 150 LTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFS 196
>sp|Q15233|NONO_HUMAN Non-POU domain-containing octamer-binding protein OS=Homo sapiens
GN=NONO PE=1 SV=4
Length = 471
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 86 SLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK 134
+ R G ++L+V NL P +T +++R+LF + G+ IH DK
Sbjct: 61 NFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK 109
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFA 147
L V NL V+N+ + E FS G+++R + D GRPS + F+
Sbjct: 150 LTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFS 196
>sp|Q5FVM4|NONO_RAT Non-POU domain-containing octamer-binding protein OS=Rattus
norvegicus GN=Nono PE=2 SV=3
Length = 476
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 86 SLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK 134
+ R G ++L+V NL P +T +++R+LF + G+ IH DK
Sbjct: 66 NFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK 114
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFA 147
L V NL V+N+ + E FS G+++R + D GRPS + F+
Sbjct: 155 LTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFS 201
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNG 136
+++ NLHP + N + E FS GE+ + D+NG
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENG 175
Score = 34.3 bits (77), Expect = 0.43, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRP 138
T +YV N+ T+++ +LFS+ GE+ A+ D G+P
Sbjct: 231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKP 270
>sp|Q7SG09|MRD1_NEUCR Multiple RNA-binding domain-containing protein 1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=mrd-1 PE=3 SV=1
Length = 827
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 90 AGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNG 136
+ IS IE ++L++ NL VT DD+RE F++ G L + D G
Sbjct: 299 SAISLIEKTSRLFLRNLSYTVTEDDVREHFAKFGILVEVHVPLDSKG 345
Score = 30.0 bits (66), Expect = 9.1, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFS 150
GTKL V NL VT ++R LFS G+L A+ K S A FA FS
Sbjct: 703 GTKLVVKNLPFEVTKKEVRTLFSAYGKL--VALRIPKKFNQSSRGFA-FAEFS 752
>sp|P52299|NCBP2_XENLA Nuclear cap-binding protein subunit 2 OS=Xenopus laevis GN=ncbp2
PE=2 SV=2
Length = 153
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLF 153
LYV NL T + I ELFS+ G++KR + DK V AC F +
Sbjct: 39 LYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDK-----VKKTACGFCFVEYY 86
>sp|A2SW84|NCBP2_SINCH Nuclear cap-binding protein subunit 2 OS=Siniperca chuatsi GN=ncbp2
PE=2 SV=1
Length = 165
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLF 153
LYV NL T + + ELFS+ G++KR I DK V AC F +
Sbjct: 41 LYVGNLSFYTTEEQVHELFSKSGDVKRIIIGLDK-----VKKTACGFCFVEYY 88
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 35.0 bits (79), Expect = 0.30, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGR 137
T +YV N++ VT+++ RELF++ GE+ ++ D+ G+
Sbjct: 241 TNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGK 279
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 85 DSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVA 144
D RA + G E K++V L P + + I+E F GE++ + D + +
Sbjct: 219 DPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDT--KTNERRGF 276
Query: 145 CFATFS 150
CF T++
Sbjct: 277 CFITYT 282
>sp|Q9Y580|RBM7_HUMAN RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1
Length = 266
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACF 146
G + E L+V NL VT + + ELF + G + + I DK+G+P + F
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNF 57
>sp|C0H859|NCBP2_SALSA Nuclear cap-binding protein subunit 2 OS=Salmo salar GN=ncbp2 PE=2
SV=1
Length = 155
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLF 153
LYV NL T + + ELFS+ G++KR I DK V AC F +
Sbjct: 41 LYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDK-----VKKTACGFCFVEYY 88
>sp|Q8JGR6|NCBP2_DANRE Nuclear cap-binding protein subunit 2 OS=Danio rerio GN=ncbp2 PE=2
SV=2
Length = 155
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLF 153
LYV NL T + + ELF++ G++KR I DK + AC F +
Sbjct: 41 LYVGNLSFYTTEEQVHELFAKCGDVKRIIIGLDK-----IKKTACGFCFVEYY 88
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 34.7 bits (78), Expect = 0.32, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 84 EDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNG 136
+ SLR G I Y+ NLHP + N + E FS G + + D+NG
Sbjct: 117 DPSLRKKGSGNI------YIKNLHPAIDNKSLHETFSTFGNILSCKVATDENG 163
>sp|Q04047|NONA_DROME Protein no-on-transient A OS=Drosophila melanogaster GN=nonA PE=1
SV=2
Length = 700
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN 135
+LYV NL +T+D++RE+F GE+ + DKN
Sbjct: 303 RLYVGNLTNDITDDELREMFKPYGEISEIFSNLDKN 338
>sp|C1BY64|NCBP2_ESOLU Nuclear cap-binding protein subunit 2 OS=Esox lucius GN=ncbp2 PE=2
SV=1
Length = 155
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLF 153
LYV NL T + + ELFS+ G++KR I DK V AC F +
Sbjct: 41 LYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDK-----VKKTACGFCFVEYY 88
>sp|Q3MHY8|RBM7_BOVIN RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 SV=1
Length = 262
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACF 146
G + E L+V NL VT + + ELF + G + + I DK+G+P + F
Sbjct: 2 GAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNF 57
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 85 DSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVA 144
D RA + G E K++V L P + + I+E F GE++ + D + +
Sbjct: 122 DPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDT--KTNERRGF 179
Query: 145 CFATFS 150
CF T++
Sbjct: 180 CFITYT 185
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS 139
+YVSNL +TN+D+ +FS+ G++ + I DK+ R S
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKS 50
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 101 LYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS 139
+YVSNL +TN+D+ +FS+ G++ + I DK+ R S
Sbjct: 12 VYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKS 50
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS 139
+ +YVSNL +TN+D+ +FS+ G++ + I DK+ R S
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKS 50
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPS 139
+ +YVSNL +TN+D+ +FS+ G++ + I DK+ R S
Sbjct: 10 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKS 50
>sp|Q9Y6M1|IF2B2_HUMAN Insulin-like growth factor 2 mRNA-binding protein 2 OS=Homo sapiens
GN=IGF2BP2 PE=1 SV=2
Length = 599
Score = 34.3 bits (77), Expect = 0.51, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 100 KLYVSNLHPGVTNDDIRELFSE 121
KLY+ NL P VT DD+R+LF +
Sbjct: 4 KLYIGNLSPAVTADDLRQLFGD 25
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 22/27 (81%)
Query: 100 KLYVSNLHPGVTNDDIRELFSEIGELK 126
++YV+++HP +++DDI+ +F G++K
Sbjct: 184 RIYVASIHPDLSDDDIKSVFEAFGKIK 210
>sp|Q7QCB6|NCBP2_ANOGA Nuclear cap-binding protein subunit 2 OS=Anopheles gambiae GN=Cbp20
PE=3 SV=3
Length = 163
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATF 149
+ V + LYV NL T + I ELFS G+++R + DK + CF +
Sbjct: 34 LRVSSTLYVGNLSFYTTEEQIHELFSRCGDVRRIIMGLDKFKKTPCG--FCFVEY 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,902,449
Number of Sequences: 539616
Number of extensions: 3081819
Number of successful extensions: 14158
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 13291
Number of HSP's gapped (non-prelim): 829
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)