Query 029987
Match_columns 184
No_of_seqs 214 out of 1634
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 10:34:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f3j_A RNA and export factor b 100.0 9.1E-34 3.1E-38 218.4 14.4 149 1-175 15-163 (177)
2 3ulh_A THO complex subunit 4; 99.9 3.7E-22 1.3E-26 140.4 11.1 100 72-175 5-104 (107)
3 4fxv_A ELAV-like protein 1; RN 99.9 1.9E-21 6.5E-26 135.9 10.7 77 96-174 17-94 (99)
4 3s8s_A Histone-lysine N-methyl 99.9 6.3E-21 2.2E-25 135.8 11.2 78 96-175 4-82 (110)
5 2kt5_A RNA and export factor-b 99.8 2.5E-20 8.7E-25 134.6 11.5 100 72-175 11-110 (124)
6 2lkz_A RNA-binding protein 5; 99.8 4.5E-20 1.5E-24 128.1 8.5 80 94-175 5-91 (95)
7 4f25_A Polyadenylate-binding p 99.8 9.1E-20 3.1E-24 130.3 9.9 76 97-175 4-79 (115)
8 2cpz_A CUG triplet repeat RNA- 99.8 3.5E-19 1.2E-23 126.8 12.8 79 95-175 22-101 (115)
9 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.8E-19 6.1E-24 121.8 10.6 78 96-175 4-82 (87)
10 1whw_A Hypothetical protein ri 99.8 1.7E-19 5.8E-24 125.0 10.3 81 94-176 4-85 (99)
11 2dnz_A Probable RNA-binding pr 99.8 1.6E-19 5.5E-24 124.1 10.0 79 96-176 3-82 (95)
12 2ywk_A Putative RNA-binding pr 99.8 2.2E-19 7.4E-24 123.5 10.6 79 95-175 13-91 (95)
13 2cqc_A Arginine/serine-rich sp 99.8 2.5E-19 8.6E-24 123.0 10.7 80 95-176 12-92 (95)
14 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.6E-19 5.4E-24 121.6 9.5 78 95-174 4-82 (85)
15 2e5h_A Zinc finger CCHC-type a 99.8 2.5E-19 8.5E-24 122.9 10.4 78 95-174 13-91 (94)
16 2jrs_A RNA-binding protein 39; 99.8 1.8E-19 6.3E-24 127.5 9.6 84 91-176 19-103 (108)
17 2do4_A Squamous cell carcinoma 99.8 3.5E-19 1.2E-23 123.7 10.8 79 95-175 14-92 (100)
18 2cq0_A Eukaryotic translation 99.8 2.7E-19 9.3E-24 124.9 10.1 80 95-176 12-92 (103)
19 3md1_A Nuclear and cytoplasmic 99.8 4.1E-19 1.4E-23 119.0 10.5 75 99-175 2-77 (83)
20 2la6_A RNA-binding protein FUS 99.8 3.1E-19 1.1E-23 123.9 10.1 80 93-174 8-96 (99)
21 2dnm_A SRP46 splicing factor; 99.8 1.7E-19 5.8E-24 126.0 8.8 80 94-175 9-89 (103)
22 3p5t_L Cleavage and polyadenyl 99.8 7.7E-20 2.6E-24 125.0 6.8 77 99-177 2-81 (90)
23 2do0_A HnRNP M, heterogeneous 99.8 5.2E-19 1.8E-23 125.6 11.4 79 95-175 12-90 (114)
24 2lxi_A RNA-binding protein 10; 99.8 6E-20 2E-24 126.2 6.2 76 98-175 1-79 (91)
25 2dgs_A DAZ-associated protein 99.8 3.8E-19 1.3E-23 123.3 10.3 79 94-175 6-85 (99)
26 1x5u_A Splicing factor 3B subu 99.8 2.4E-19 8.3E-24 125.5 9.4 80 94-175 11-91 (105)
27 1x5t_A Splicing factor 3B subu 99.8 2.5E-19 8.7E-24 123.3 9.1 79 96-176 3-83 (96)
28 2dgo_A Cytotoxic granule-assoc 99.8 6.7E-19 2.3E-23 125.3 11.6 80 94-175 11-91 (115)
29 1x5s_A Cold-inducible RNA-bind 99.8 2.7E-19 9.4E-24 124.6 9.3 80 94-175 8-88 (102)
30 2x1f_A MRNA 3'-END-processing 99.8 4.4E-19 1.5E-23 122.4 10.2 77 97-175 1-78 (96)
31 2dnh_A Bruno-like 5, RNA bindi 99.8 4.6E-19 1.6E-23 124.1 10.3 77 96-174 13-92 (105)
32 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.8E-19 9.4E-24 124.6 8.9 80 94-175 8-88 (102)
33 1x4e_A RNA binding motif, sing 99.8 1.1E-19 3.6E-24 122.7 6.5 79 96-176 3-82 (85)
34 1x4h_A RNA-binding protein 28; 99.8 5.4E-19 1.8E-23 124.8 10.4 81 94-176 11-98 (111)
35 1p27_B RNA-binding protein 8A; 99.8 4.3E-19 1.5E-23 124.4 9.7 80 94-175 19-99 (106)
36 1oo0_B CG8781-PA, drosophila Y 99.8 5.2E-19 1.8E-23 124.9 10.1 81 93-175 21-102 (110)
37 3ns6_A Eukaryotic translation 99.8 8.8E-20 3E-24 127.3 5.7 77 97-175 5-89 (100)
38 3s7r_A Heterogeneous nuclear r 99.8 9.5E-19 3.3E-23 118.4 10.6 78 94-174 7-85 (87)
39 2dgp_A Bruno-like 4, RNA bindi 99.8 3.6E-19 1.2E-23 124.9 8.8 81 93-175 8-92 (106)
40 2cq3_A RNA-binding protein 9; 99.8 1.6E-18 5.4E-23 121.0 12.0 80 94-176 11-90 (103)
41 2div_A TRNA selenocysteine ass 99.8 5.4E-19 1.9E-23 122.4 9.4 78 95-174 6-89 (99)
42 2ek1_A RNA-binding protein 12; 99.8 2.5E-19 8.7E-24 123.1 7.6 79 96-176 13-92 (95)
43 2dgv_A HnRNP M, heterogeneous 99.8 7.1E-19 2.4E-23 120.2 9.8 79 94-175 4-82 (92)
44 1s79_A Lupus LA protein; RRM, 99.8 3E-19 1E-23 125.6 7.9 75 97-174 10-84 (103)
45 2khc_A Testis-specific RNP-typ 99.8 6.4E-19 2.2E-23 125.9 9.7 79 94-174 36-115 (118)
46 2cqp_A RNA-binding protein 12; 99.8 4E-19 1.4E-23 122.9 8.4 80 94-175 11-91 (98)
47 2dng_A Eukaryotic translation 99.8 1.2E-18 4.2E-23 121.6 10.9 78 94-175 11-89 (103)
48 2dhg_A TRNA selenocysteine ass 99.8 7.6E-19 2.6E-23 122.7 9.7 80 95-176 6-87 (104)
49 3ex7_B RNA-binding protein 8A; 99.8 5E-19 1.7E-23 127.9 8.9 82 92-175 16-98 (126)
50 2fy1_A RNA-binding motif prote 99.8 6.4E-19 2.2E-23 126.2 9.4 80 95-176 4-83 (116)
51 2d9p_A Polyadenylate-binding p 99.8 7.4E-19 2.5E-23 122.7 9.4 78 95-175 12-89 (103)
52 3ucg_A Polyadenylate-binding p 99.8 1.5E-18 5.2E-23 117.7 10.7 76 98-176 6-82 (89)
53 2cph_A RNA binding motif prote 99.8 7.7E-19 2.6E-23 123.2 9.5 80 94-175 11-93 (107)
54 3n9u_C Cleavage and polyadenyl 99.8 8.3E-19 2.8E-23 132.1 10.3 78 97-176 54-134 (156)
55 2dh8_A DAZ-associated protein 99.8 1E-18 3.5E-23 122.4 10.0 80 95-177 13-93 (105)
56 2cpe_A RNA-binding protein EWS 99.8 9.5E-19 3.3E-23 124.1 10.0 81 94-176 11-100 (113)
57 2cpf_A RNA binding motif prote 99.8 9.4E-19 3.2E-23 121.0 9.4 79 96-176 3-85 (98)
58 2kxn_B Transformer-2 protein h 99.8 7.3E-19 2.5E-23 128.3 9.3 80 95-176 43-123 (129)
59 2cqd_A RNA-binding region cont 99.8 1.2E-18 4.2E-23 124.2 10.2 80 94-176 13-93 (116)
60 1wi8_A EIF-4B, eukaryotic tran 99.8 1.1E-18 3.8E-23 122.1 9.6 77 95-175 12-90 (104)
61 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.7E-18 9.1E-23 119.9 11.5 79 94-175 11-89 (103)
62 2dgx_A KIAA0430 protein; RRM d 99.8 1.6E-18 5.5E-23 119.9 10.1 78 95-176 6-87 (96)
63 2krb_A Eukaryotic translation 99.8 3.3E-19 1.1E-23 119.5 6.4 74 98-174 1-81 (81)
64 1wez_A HnRNP H', FTP-3, hetero 99.8 6.7E-19 2.3E-23 123.5 8.2 76 96-175 13-88 (102)
65 2dgw_A Probable RNA-binding pr 99.8 2.4E-18 8.2E-23 117.5 10.7 77 95-175 7-83 (91)
66 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.3E-18 7.9E-23 128.9 11.6 81 93-175 34-115 (156)
67 2db1_A Heterogeneous nuclear r 99.8 1.3E-18 4.3E-23 125.0 9.5 77 96-175 15-94 (118)
68 2cpy_A RNA-binding protein 12; 99.8 9.9E-19 3.4E-23 124.7 8.8 79 95-176 12-91 (114)
69 4a8x_A RNA-binding protein wit 99.8 1E-18 3.5E-23 118.2 8.3 78 97-176 3-82 (88)
70 1wg5_A Heterogeneous nuclear r 99.8 1.1E-18 3.8E-23 122.5 8.5 77 96-175 13-90 (104)
71 2cq4_A RNA binding motif prote 99.8 1.9E-18 6.6E-23 122.8 9.7 76 97-175 24-100 (114)
72 1u6f_A Tcubp1, RNA-binding pro 99.8 2.3E-18 7.7E-23 126.4 9.9 81 93-175 37-118 (139)
73 2hgl_A HNRPF protein, heteroge 99.8 1.2E-18 4.2E-23 128.5 8.3 78 96-176 42-122 (136)
74 1wel_A RNA-binding protein 12; 99.8 1E-18 3.6E-23 126.2 7.7 78 96-176 23-101 (124)
75 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4E-18 1.4E-22 129.0 11.3 80 94-175 68-148 (165)
76 2dnn_A RNA-binding protein 12; 99.8 1.6E-18 5.4E-23 123.2 8.4 76 98-177 16-91 (109)
77 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.4E-18 1.2E-22 125.1 10.5 77 96-174 61-138 (140)
78 1sjq_A Polypyrimidine tract-bi 99.8 2.7E-18 9.4E-23 121.2 9.5 76 95-177 13-90 (105)
79 2wbr_A GW182, gawky, LD47780P; 99.8 4.2E-18 1.4E-22 116.2 9.9 73 97-176 6-78 (89)
80 2nlw_A Eukaryotic translation 99.8 1.6E-18 5.6E-23 121.8 8.1 80 94-176 11-97 (105)
81 1p1t_A Cleavage stimulation fa 99.8 5.3E-19 1.8E-23 123.4 5.4 77 97-175 7-84 (104)
82 2m2b_A RNA-binding protein 10; 99.8 5.9E-19 2E-23 128.8 5.8 78 94-174 19-103 (131)
83 1x4c_A Splicing factor, argini 99.8 5.8E-18 2E-22 119.5 10.5 73 96-176 13-90 (108)
84 2err_A Ataxin-2-binding protei 99.8 4.5E-18 1.5E-22 120.4 9.9 81 93-176 24-104 (109)
85 1x4a_A Splicing factor, argini 99.8 8.9E-18 3E-22 118.4 11.4 77 96-176 20-96 (109)
86 2mss_A Protein (musashi1); RNA 99.8 1E-18 3.6E-23 115.1 6.1 72 100-174 1-73 (75)
87 2cqg_A TDP-43, TAR DNA-binding 99.8 9.2E-18 3.1E-22 117.1 11.3 79 94-176 11-90 (103)
88 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1E-18 3.5E-23 115.4 6.0 73 99-174 1-74 (77)
89 2hgm_A HNRPF protein, heteroge 99.8 2.1E-18 7.3E-23 125.6 8.0 78 94-175 38-117 (126)
90 1x5o_A RNA binding motif, sing 99.7 5.7E-18 1.9E-22 120.2 9.6 73 96-170 23-95 (114)
91 3q2s_C Cleavage and polyadenyl 99.7 2.5E-18 8.5E-23 137.0 8.5 77 97-175 67-146 (229)
92 2jwn_A Embryonic polyadenylate 99.7 5.2E-18 1.8E-22 122.1 9.1 76 98-176 36-112 (124)
93 2fc9_A NCL protein; structure 99.7 6.7E-18 2.3E-22 117.4 9.3 77 94-175 11-87 (101)
94 3r27_A HnRNP L, heterogeneous 99.7 8.1E-18 2.8E-22 117.7 9.8 75 94-175 17-93 (100)
95 2kn4_A Immunoglobulin G-bindin 99.7 6.1E-18 2.1E-22 126.5 9.7 80 94-175 66-146 (158)
96 2jvr_A Nucleolar protein 3; RN 99.7 4.4E-18 1.5E-22 121.3 8.4 79 94-177 24-103 (111)
97 2dha_A FLJ20171 protein; RRM d 99.7 2.8E-18 9.7E-23 124.4 7.3 77 96-175 21-101 (123)
98 1x4b_A Heterogeneous nuclear r 99.7 6.1E-18 2.1E-22 120.5 9.0 77 97-176 26-103 (116)
99 2rs2_A Musashi-1, RNA-binding 99.7 6.3E-18 2.1E-22 119.7 8.8 80 94-176 21-101 (109)
100 2lmi_A GRSF-1, G-rich sequence 99.7 2.2E-18 7.7E-23 121.5 6.2 79 94-175 7-88 (107)
101 2cpi_A CCR4-NOT transcription 99.7 6.9E-18 2.4E-22 119.7 8.8 79 96-176 13-98 (111)
102 2dis_A Unnamed protein product 99.7 6.1E-18 2.1E-22 119.1 8.4 77 96-174 6-87 (109)
103 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.8E-18 6.1E-23 120.5 5.5 79 93-175 14-94 (100)
104 4f02_A Polyadenylate-binding p 99.7 1.4E-17 4.6E-22 130.6 11.0 79 95-175 12-91 (213)
105 2ki2_A SS-DNA binding protein 99.7 1.4E-18 4.6E-23 118.4 4.6 75 99-176 2-77 (90)
106 2a3j_A U1 small nuclear ribonu 99.7 8.5E-18 2.9E-22 122.5 9.0 78 93-174 24-105 (127)
107 2xs2_A Deleted in azoospermia- 99.7 6E-18 2.1E-22 117.8 7.6 76 96-175 7-82 (102)
108 2lea_A Serine/arginine-rich sp 99.7 2E-18 7E-23 126.8 5.3 78 96-175 45-123 (135)
109 2dnq_A RNA-binding protein 4B; 99.7 1.9E-17 6.5E-22 112.8 9.6 74 94-176 4-77 (90)
110 1x4d_A Matrin 3; structural ge 99.7 7.5E-18 2.6E-22 118.4 7.1 73 96-175 13-88 (102)
111 2j8a_A Histone-lysine N-methyl 99.7 1.5E-17 5E-22 120.9 8.7 75 99-175 3-92 (136)
112 2dgt_A RNA-binding protein 30; 99.7 3.9E-17 1.3E-21 111.7 10.4 74 94-176 6-79 (92)
113 2ytc_A PRE-mRNA-splicing facto 99.7 3.2E-17 1.1E-21 110.3 9.7 74 94-174 8-82 (85)
114 2dgu_A Heterogeneous nuclear r 99.7 2.8E-17 9.7E-22 114.8 9.8 75 93-176 6-80 (103)
115 2cq1_A PTB-like protein L; RRM 99.7 3.1E-17 1.1E-21 115.0 9.8 75 96-177 13-89 (101)
116 1iqt_A AUF1, heterogeneous nuc 99.7 4.2E-18 1.4E-22 112.0 4.9 72 100-174 1-73 (75)
117 2hgn_A Heterogeneous nuclear r 99.7 2.3E-18 8E-23 127.4 4.1 75 97-175 45-119 (139)
118 2cpj_A Non-POU domain-containi 99.7 3E-17 1E-21 113.8 9.3 75 94-175 11-85 (99)
119 2cpx_A Hypothetical protein FL 99.7 5.2E-18 1.8E-22 120.5 5.5 80 94-175 21-101 (115)
120 2fc8_A NCL protein; structure 99.7 3.5E-17 1.2E-21 113.8 9.5 77 94-175 11-88 (102)
121 2dnp_A RNA-binding protein 14; 99.7 4.3E-17 1.5E-21 111.1 9.6 73 95-176 6-78 (90)
122 2la4_A Nuclear and cytoplasmic 99.7 4.3E-17 1.5E-21 113.3 9.8 74 95-175 24-97 (101)
123 1why_A Hypothetical protein ri 99.7 3.3E-17 1.1E-21 113.2 9.1 73 96-175 15-89 (97)
124 1nu4_A U1A RNA binding domain; 99.7 9E-18 3.1E-22 115.7 6.2 78 94-175 4-85 (97)
125 1wex_A Hypothetical protein (r 99.7 2.7E-17 9.4E-22 115.8 8.6 74 95-175 12-87 (104)
126 2ad9_A Polypyrimidine tract-bi 99.7 2.4E-17 8.2E-22 118.9 8.4 76 94-176 27-104 (119)
127 3lqv_A PRE-mRNA branch site pr 99.7 4.3E-17 1.5E-21 115.8 9.5 77 95-175 5-81 (115)
128 2e5j_A Methenyltetrahydrofolat 99.7 2.8E-17 9.7E-22 113.6 8.0 75 95-175 16-90 (97)
129 1x4g_A Nucleolysin TIAR; struc 99.7 6E-17 2E-21 114.2 9.8 75 95-176 22-96 (109)
130 1fxl_A Paraneoplastic encephal 99.7 8.4E-17 2.9E-21 119.8 10.9 76 98-175 2-78 (167)
131 2xnq_A Nuclear polyadenylated 99.7 1E-16 3.5E-21 111.1 10.3 74 93-175 17-91 (97)
132 1fj7_A Nucleolin RBD1, protein 99.7 3.5E-18 1.2E-22 118.8 2.8 77 96-176 15-92 (101)
133 3beg_B Splicing factor, argini 99.7 1.5E-17 5E-22 118.9 6.0 67 97-171 15-81 (115)
134 3pgw_S U1-70K; protein-RNA com 99.7 5.7E-17 1.9E-21 140.3 10.8 79 96-176 100-179 (437)
135 3egn_A RNA-binding protein 40; 99.7 3.5E-17 1.2E-21 120.8 8.0 81 93-175 40-126 (143)
136 2cqh_A IGF-II mRNA-binding pro 99.7 4.3E-17 1.5E-21 111.6 7.9 74 94-175 4-79 (93)
137 2hvz_A Splicing factor, argini 99.7 2.1E-17 7.2E-22 114.8 6.4 71 99-175 1-71 (101)
138 1whx_A Hypothetical protein ri 99.7 3.4E-17 1.2E-21 116.3 7.6 72 97-175 9-80 (111)
139 2jvo_A Nucleolar protein 3; nu 99.7 8.9E-17 3.1E-21 113.6 9.6 75 93-176 26-100 (108)
140 1fjc_A Nucleolin RBD2, protein 99.7 2.6E-17 8.9E-22 113.3 6.5 75 95-175 13-87 (96)
141 2lcw_A RNA-binding protein FUS 99.5 1.4E-18 4.7E-23 124.0 0.0 79 96-176 5-92 (116)
142 2cpd_A Apobec-1 stimulating pr 99.7 2.1E-16 7.1E-21 109.5 10.8 74 94-176 11-86 (99)
143 2dnl_A Cytoplasmic polyadenyla 99.7 5.9E-17 2E-21 115.4 8.2 63 96-161 6-72 (114)
144 2hzc_A Splicing factor U2AF 65 99.7 1.2E-16 3.9E-21 107.9 9.1 72 97-176 5-87 (87)
145 2kvi_A Nuclear polyadenylated 99.7 5E-17 1.7E-21 112.2 7.5 72 94-174 6-78 (96)
146 1wf1_A RNA-binding protein RAL 99.7 1.1E-16 3.7E-21 113.0 9.4 71 96-175 25-96 (110)
147 1x4f_A Matrin 3; structural ge 99.7 1.9E-17 6.5E-22 118.2 5.4 74 95-175 22-98 (112)
148 3md3_A Nuclear and cytoplasmic 99.7 2.4E-16 8.2E-21 117.1 11.6 80 94-175 83-163 (166)
149 2e5g_A U6 snRNA-specific termi 99.7 2.3E-16 7.7E-21 108.4 10.3 72 97-176 7-79 (94)
150 1l3k_A Heterogeneous nuclear r 99.7 1.6E-16 5.5E-21 121.6 10.5 80 93-175 8-88 (196)
151 1b7f_A Protein (SXL-lethal pro 99.7 1E-16 3.5E-21 119.7 9.0 76 97-174 2-78 (168)
152 1wg1_A KIAA1579 protein, homol 99.7 9.6E-17 3.3E-21 109.0 8.0 72 97-176 4-75 (88)
153 2g4b_A Splicing factor U2AF 65 99.7 3E-16 1E-20 117.8 11.1 78 96-175 92-170 (172)
154 2i2y_A Fusion protein consists 99.7 1.3E-16 4.3E-21 118.6 8.3 76 94-175 69-144 (150)
155 3md3_A Nuclear and cytoplasmic 99.7 2.1E-16 7.2E-21 117.5 9.3 75 99-175 1-75 (166)
156 2cq2_A Hypothetical protein LO 99.7 1.3E-16 4.4E-21 114.1 7.5 80 94-180 21-107 (114)
157 2e44_A Insulin-like growth fac 99.7 1.8E-16 6E-21 109.1 7.6 75 96-175 13-88 (96)
158 2qfj_A FBP-interacting repress 99.7 3.7E-16 1.3E-20 121.3 9.8 78 96-175 123-201 (216)
159 1x5p_A Negative elongation fac 99.7 9.9E-16 3.4E-20 105.7 10.9 72 96-176 13-84 (97)
160 2yh0_A Splicing factor U2AF 65 99.7 7.3E-16 2.5E-20 118.1 11.0 79 95-175 111-190 (198)
161 3nmr_A Cugbp ELAV-like family 99.6 4.8E-16 1.7E-20 116.6 9.4 77 96-174 93-172 (175)
162 2qfj_A FBP-interacting repress 99.6 4.1E-16 1.4E-20 121.0 9.1 78 97-176 27-105 (216)
163 4f02_A Polyadenylate-binding p 99.6 5.9E-16 2E-20 121.2 9.9 75 98-175 103-177 (213)
164 1b7f_A Protein (SXL-lethal pro 99.6 1.3E-15 4.3E-20 113.7 10.4 78 95-174 86-166 (168)
165 3d2w_A TAR DNA-binding protein 99.6 5.6E-16 1.9E-20 105.8 7.5 72 94-175 7-80 (89)
166 1sjr_A Polypyrimidine tract-bi 99.6 9.6E-16 3.3E-20 116.1 9.3 72 98-174 46-119 (164)
167 1l3k_A Heterogeneous nuclear r 99.6 1.3E-15 4.5E-20 116.5 10.2 77 96-175 102-179 (196)
168 3tyt_A Heterogeneous nuclear r 99.6 8.7E-16 3E-20 120.2 9.4 73 97-175 3-76 (205)
169 2diu_A KIAA0430 protein; struc 99.6 9.3E-16 3.2E-20 105.6 8.0 68 98-176 9-81 (96)
170 3nmr_A Cugbp ELAV-like family 99.6 9.1E-16 3.1E-20 115.1 8.6 69 97-167 2-73 (175)
171 2voo_A Lupus LA protein; RNA-b 99.6 1.6E-15 5.4E-20 117.8 10.1 75 98-175 109-183 (193)
172 3zzy_A Polypyrimidine tract-bi 99.6 2.3E-15 7.9E-20 109.9 10.3 71 98-174 28-101 (130)
173 2cjk_A Nuclear polyadenylated 99.6 1.2E-15 4E-20 113.9 8.1 74 97-174 2-76 (167)
174 1fxl_A Paraneoplastic encephal 99.6 2.4E-15 8.3E-20 111.8 9.6 73 96-170 86-159 (167)
175 2cjk_A Nuclear polyadenylated 99.6 7.2E-16 2.4E-20 115.1 6.5 76 97-175 86-162 (167)
176 2e5i_A Heterogeneous nuclear r 99.6 5.5E-15 1.9E-19 107.2 10.8 69 100-175 27-98 (124)
177 2pe8_A Splicing factor 45; RRM 99.6 7.5E-15 2.6E-19 103.4 11.1 79 96-176 6-91 (105)
178 1wf0_A TDP-43, TAR DNA-binding 99.6 1.1E-15 3.8E-20 103.5 5.9 73 96-176 3-75 (88)
179 3pgw_A U1-A; protein-RNA compl 99.6 5.8E-15 2E-19 119.6 10.7 78 94-175 5-86 (282)
180 2bz2_A Negative elongation fac 99.6 3.8E-15 1.3E-19 107.4 8.2 72 95-175 36-107 (121)
181 3smz_A Protein raver-1, ribonu 99.6 1.3E-14 4.5E-19 117.5 11.0 79 95-175 181-260 (284)
182 2adc_A Polypyrimidine tract-bi 99.6 5.1E-15 1.8E-19 117.0 8.0 76 94-175 30-106 (229)
183 1fje_B Nucleolin RBD12, protei 99.6 7.7E-15 2.6E-19 110.5 8.6 74 96-175 97-170 (175)
184 3smz_A Protein raver-1, ribonu 99.6 2E-14 6.8E-19 116.5 11.2 78 96-175 93-171 (284)
185 3tyt_A Heterogeneous nuclear r 99.5 1.2E-14 4.3E-19 113.6 8.4 72 95-169 120-193 (205)
186 2ghp_A U4/U6 snRNA-associated 99.5 1.6E-14 5.6E-19 117.4 9.3 79 94-175 206-287 (292)
187 2ghp_A U4/U6 snRNA-associated 99.5 2E-14 7E-19 116.9 9.7 81 92-176 35-115 (292)
188 3sde_A Paraspeckle component 1 99.5 1.5E-14 5.1E-19 116.6 8.3 79 96-176 94-176 (261)
189 3sde_A Paraspeckle component 1 99.5 3.1E-14 1.1E-18 114.7 10.1 76 93-175 17-92 (261)
190 3pgw_A U1-A; protein-RNA compl 99.5 4.7E-14 1.6E-18 114.1 10.5 75 94-174 203-278 (282)
191 1fje_B Nucleolin RBD12, protei 99.5 3.8E-15 1.3E-19 112.2 3.6 80 94-176 9-88 (175)
192 1qm9_A Polypyrimidine tract-bi 99.5 1.6E-14 5.4E-19 111.1 6.5 71 98-174 3-74 (198)
193 3u1l_A PRE-mRNA-splicing facto 99.5 2.3E-14 7.9E-19 114.7 7.3 73 95-174 131-224 (240)
194 1jmt_A Splicing factor U2AF 35 99.5 7.9E-15 2.7E-19 103.1 3.9 70 103-174 20-101 (104)
195 2dit_A HIV TAT specific factor 99.5 1.4E-13 4.9E-18 97.4 10.4 75 96-175 13-98 (112)
196 2g4b_A Splicing factor U2AF 65 99.5 9.6E-14 3.3E-18 103.9 9.5 73 97-177 3-86 (172)
197 2yh0_A Splicing factor U2AF 65 99.5 1.9E-13 6.4E-18 104.5 9.7 72 97-176 3-85 (198)
198 3v4m_A Splicing factor U2AF 65 99.5 1.7E-13 5.7E-18 96.5 8.3 78 96-175 3-93 (105)
199 1qm9_A Polypyrimidine tract-bi 99.5 1.1E-13 3.9E-18 106.2 7.2 74 95-174 117-192 (198)
200 2adc_A Polypyrimidine tract-bi 99.5 2.1E-13 7.3E-18 107.7 8.8 74 95-174 148-223 (229)
201 3tht_A Alkylated DNA repair pr 99.4 3.4E-13 1.2E-17 113.2 8.6 66 95-167 15-82 (345)
202 3ue2_A Poly(U)-binding-splicin 99.4 9.8E-13 3.3E-17 94.5 8.6 77 97-175 19-105 (118)
203 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.8E-11 6E-16 85.4 10.0 69 98-174 10-85 (100)
204 1owx_A Lupus LA protein, SS-B, 99.3 1.7E-11 5.8E-16 88.2 8.4 76 90-172 10-89 (121)
205 3s6e_A RNA-binding protein 39; 99.3 3.7E-11 1.3E-15 85.7 9.6 75 96-175 5-89 (114)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 3.1E-10 1E-14 77.3 7.9 78 96-183 5-90 (91)
207 1ufw_A Synaptojanin 2; RNP dom 98.9 2E-09 6.9E-14 73.7 6.9 72 95-176 12-92 (95)
208 3dxb_A Thioredoxin N-terminall 98.8 7.8E-09 2.7E-13 80.9 6.4 75 98-174 124-208 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.5 5E-07 1.7E-11 63.3 8.2 75 96-177 19-98 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.0 5.8E-05 2E-09 52.2 9.4 63 95-166 5-76 (104)
211 1wey_A Calcipressin 1; structu 97.9 6.7E-05 2.3E-09 52.0 7.6 71 97-174 4-79 (104)
212 1uw4_A UPF3X; nonsense mediate 97.8 0.00016 5.5E-09 49.0 9.2 66 99-166 2-70 (91)
213 1whv_A Poly(A)-specific ribonu 97.5 0.00043 1.5E-08 47.3 7.6 55 98-161 15-69 (100)
214 3ctr_A Poly(A)-specific ribonu 97.1 0.0012 4.2E-08 45.2 6.4 54 100-162 7-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.0 0.0035 1.2E-07 44.4 7.5 65 95-168 21-85 (119)
216 2l08_A Regulator of nonsense t 96.7 0.0018 6E-08 44.3 4.3 67 98-166 9-78 (97)
217 2kn4_A Immunoglobulin G-bindin 96.0 0.0052 1.8E-07 44.7 3.7 35 127-164 2-36 (158)
218 3pq1_A Poly(A) RNA polymerase; 95.7 0.009 3.1E-07 51.7 4.3 53 98-155 53-105 (464)
219 2i2y_A Fusion protein consists 93.2 0.032 1.1E-06 40.2 1.7 37 137-176 11-48 (150)
220 3p3d_A Nucleoporin 53; structu 93.1 0.18 6.1E-06 36.1 5.4 68 98-169 7-89 (132)
221 3d45_A Poly(A)-specific ribonu 91.9 0.68 2.3E-05 40.4 8.6 55 98-162 440-494 (507)
222 1b34_A Protein (small nuclear 89.8 0.089 3E-06 37.1 0.8 8 8-15 75-82 (119)
223 4e8u_A Putative uncharacterize 75.9 6.6 0.00023 29.2 5.9 48 99-148 13-71 (172)
224 4f25_A Polyadenylate-binding p 71.3 0.83 2.8E-05 31.1 0.0 18 97-114 96-113 (115)
225 4eyt_A Telomerase associated p 64.0 29 0.00099 23.1 8.6 59 96-163 10-68 (129)
226 2g0c_A ATP-dependent RNA helic 57.0 28 0.00097 21.4 5.4 65 100-174 2-72 (76)
227 3pgw_S U1-70K; protein-RNA com 47.2 2.4 8.3E-05 36.0 -1.4 14 115-128 9-22 (437)
228 4bby_A Alkyldihydroxyacetoneph 40.3 17 0.00057 32.5 2.9 56 104-161 349-408 (658)
229 3ts2_A Protein LIN-28 homolog 39.0 4 0.00014 29.5 -1.1 28 113-147 2-29 (148)
230 1xn9_A 30S ribosomal protein S 37.8 52 0.0018 22.0 4.5 48 107-155 27-80 (101)
231 3fut_A Dimethyladenosine trans 37.3 34 0.0012 26.9 4.0 28 99-127 111-138 (271)
232 2v94_A RPS24, 30S ribosomal pr 35.8 64 0.0022 21.9 4.7 46 108-154 37-88 (107)
233 1ywx_A 30S ribosomal protein S 34.6 63 0.0022 21.7 4.4 47 107-154 27-79 (102)
234 3uzu_A Ribosomal RNA small sub 32.8 22 0.00075 28.1 2.2 30 99-128 115-144 (279)
235 2gpv_G Nuclear receptor corepr 32.0 21 0.0007 17.6 1.2 10 6-15 2-11 (26)
236 1qyr_A KSGA, high level kasuga 29.9 43 0.0015 25.8 3.5 23 100-122 92-114 (252)
237 3u5c_Y RP50, 40S ribosomal pro 29.8 1.2E+02 0.004 21.4 5.4 46 108-154 33-84 (135)
238 1wvf_A 4-cresol dehydrogenase 27.5 46 0.0016 28.6 3.5 42 114-155 217-260 (520)
239 3tqs_A Ribosomal RNA small sub 27.5 21 0.00071 27.8 1.2 29 100-128 98-126 (255)
240 2ovm_B NCOR, progesterone rece 26.8 28 0.00096 17.2 1.2 10 6-15 10-19 (26)
241 3ftd_A Dimethyladenosine trans 26.1 50 0.0017 25.3 3.2 27 99-125 96-122 (249)
242 2kk7_A V-type ATP synthase sub 25.0 38 0.0013 19.7 1.8 13 1-14 1-13 (52)
243 3pm9_A Putative oxidoreductase 24.9 83 0.0028 26.7 4.6 54 106-161 194-251 (476)
244 2xzm_P RPS24E; ribosome, trans 24.4 1.1E+02 0.0038 22.0 4.5 46 108-154 31-82 (149)
245 2g1d_A 30S ribosomal protein S 21.4 55 0.0019 21.8 2.2 45 108-153 29-79 (98)
246 2rf4_B DNA-directed RNA polyme 21.2 71 0.0024 20.8 2.6 30 93-122 14-43 (87)
247 1i4w_A Mitochondrial replicati 20.6 73 0.0025 26.1 3.3 22 100-121 144-165 (353)
No 1
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=100.00 E-value=9.1e-34 Score=218.40 Aligned_cols=149 Identities=36% Similarity=0.539 Sum_probs=114.1
Q ss_pred CCCCCCCCHHHHHhhcCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCc
Q 029987 1 MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGRMTGAARRGPLSNARPSSYTIAKSFRRTRNFPWQH 80 (184)
Q Consensus 1 m~~~ld~sLddii~~~~~~~r~~~~~~~~~g~~~g~g~g~~~~~~~g~g~~r~~~~~~~r~~~~~~~~~~rr~~~~~~~~ 80 (184)
||++|||||||||++.++..+ ++++++++++ +.++.+.+..|+.||.+++ .....|+|
T Consensus 15 m~~~ld~sLDdii~~~r~~~r------~~r~~~~r~~------------~~~~~~~g~~r~~~y~~~~----~~~~~w~~ 72 (177)
T 2f3j_A 15 MADKMDMSLDDIIKLNRNQRR------VNRGGGPRRN------------RPAIARGGRNRPAPYSRPK----PLPDKWQH 72 (177)
T ss_dssp CCCSSSCCHHHHHHHHHTCCS------CSSSCCSSSS------------SCCCTTTSSTTTCCSSSCC----CCTTCSSC
T ss_pred hhhhhccCHHHHHhhcccCCC------CCCCCCCCCC------------CCCCCCCCcCCCCCCCCCc----Cccccccc
Confidence 899999999999995433221 1111110000 1111112245566777543 46788999
Q ss_pred chhhhhhhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHH
Q 029987 81 DLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKW 160 (184)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~ 160 (184)
+.|++.. .......+.++|||+|||+.+++++|+++|++||+|..|.|+.++++.++|||||+|.+.++|++| |+.
T Consensus 73 d~~~~~~--~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~A--i~~ 148 (177)
T 2f3j_A 73 DLFDSGC--GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKA--MKQ 148 (177)
T ss_dssp SSSCSSC--CCCSSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHH--HHH
T ss_pred ccccccc--CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHH--HHH
Confidence 9998765 334566778999999999999999999999999999999999999999999999999999999999 999
Q ss_pred hCCCeecCeEEeeCC
Q 029987 161 YMPEEVMHLQLLSDT 175 (184)
Q Consensus 161 l~g~~~~g~~l~~~~ 175 (184)
|||..|.++.|.|.-
T Consensus 149 lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 149 YKGVPLDGRPMDIQL 163 (177)
T ss_dssp STTCBCSSSBCEEEE
T ss_pred hCCCEECCEEEEEEE
Confidence 999999999887753
No 2
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.88 E-value=3.7e-22 Score=140.43 Aligned_cols=100 Identities=35% Similarity=0.538 Sum_probs=76.5
Q ss_pred CCCCCCCCcchhhhhhhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHH
Q 029987 72 RTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSP 151 (184)
Q Consensus 72 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~ 151 (184)
|..+..|.|+.+..... ......+.++|||+|||+.+++++|+++|++||+|..|.|+.+++++++|||||+|.+.++
T Consensus 5 r~~~~~~~~~~~~~~~~--~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 82 (107)
T 3ulh_A 5 KQLPDKWQHDLFDSGFG--GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKAD 82 (107)
T ss_dssp ---------------------CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHH
T ss_pred cCCCcccccccccCCCC--CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHH
Confidence 44677899999886552 3455677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeecCeEEeeCC
Q 029987 152 LFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 152 a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
|++| |+.|||..+.++.|.|.-
T Consensus 83 a~~A--~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 83 ALKA--MKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp HHHH--HHHHTTCEETTEECEEEE
T ss_pred HHHH--HHHhCCCEeCCcEEEEEE
Confidence 9999 999999999999988753
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=135.88 Aligned_cols=77 Identities=23% Similarity=0.227 Sum_probs=73.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
..+++|||+|||+++|+++|+++|++||+|..|.|+.|+ +|.++|||||+|.+.++|++| |+.|||..+.|++|.|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~A--i~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA--INTLNGLRLQSKTIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHH--HHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHH--HHHhCCCEECCEEEEEE
Confidence 347899999999999999999999999999999999998 899999999999999999999 99999999999999886
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=6.3e-21 Score=135.75 Aligned_cols=78 Identities=12% Similarity=0.052 Sum_probs=74.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
++.++|||+|||+++++++|+++|++||+|..|.|+.|+ +++++|||||+|.+.++|++| |+.|||..+.++.|.|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~A--i~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKET--VKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH--HHHHTTCEETTEECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHH--HHHhCCCEECCeEEEEE
Confidence 467899999999999999999999999999999999999 799999999999999999999 99999999999999886
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
.
T Consensus 82 ~ 82 (110)
T 3s8s_A 82 L 82 (110)
T ss_dssp E
T ss_pred E
Confidence 4
No 5
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=2.5e-20 Score=134.58 Aligned_cols=100 Identities=34% Similarity=0.508 Sum_probs=88.3
Q ss_pred CCCCCCCCcchhhhhhhcCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHH
Q 029987 72 RTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSP 151 (184)
Q Consensus 72 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~ 151 (184)
+.....|+|+.+.+.. .........++|||+|||+++++++|+++|++||+|..|.|..+++|+++|||||+|.+.++
T Consensus 11 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~ 88 (124)
T 2kt5_A 11 GRDPDKWQHDLFDSGC--GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRAD 88 (124)
T ss_dssp CCCCCCCCCCCCCCCC--CCCCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHH
T ss_pred cCCCccccccccccCC--CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHH
Confidence 3456679998877654 33345677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeecCeEEeeCC
Q 029987 152 LFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 152 a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
|++| ++.|||..+.++.|.|.-
T Consensus 89 A~~A--i~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 89 ALKA--MKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp HHHH--HHHHTTEESSSCEEEEEE
T ss_pred HHHH--HHHcCCCEECCcEEEEEE
Confidence 9999 999999999999988763
No 6
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=4.5e-20 Score=128.13 Aligned_cols=80 Identities=11% Similarity=0.028 Sum_probs=72.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCC--eeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCC----ee
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGE--LKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPE----EV 166 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~--v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~----~~ 166 (184)
....-.+|||+|||+++|+++|+++|++||. |..|.|+.|+ +|+++|||||+|.+.++|++| |+.|||. .+
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~A--i~~lng~~~~~~i 82 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQL--LQILQSLHPPLKI 82 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHH--HHHHHSSSSCEEE
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHH--HHHhcCCCCCceE
Confidence 3345679999999999999999999999995 6689999998 899999999999999999999 9999997 48
Q ss_pred cCeEEeeCC
Q 029987 167 MHLQLLSDT 175 (184)
Q Consensus 167 ~g~~l~~~~ 175 (184)
.|++|.|+-
T Consensus 83 ~Gr~i~V~~ 91 (95)
T 2lkz_A 83 DGKTIGVDF 91 (95)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEEE
Confidence 999998863
No 7
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=9.1e-20 Score=130.34 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=70.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
..++|||+|||+++++++|+++|++||+|..|.|+.|+. .++|||||+|.+.++|++| |+.|+|..+.++.|.|..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~A--i~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERA--IEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHH--HHHHTTCEETTEECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHH--HHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999998874 4799999999999999999 999999999999998864
No 8
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=3.5e-19 Score=126.82 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=74.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
.+..++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| |+.||+..+.++.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA--IQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHH--HHHHTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHH--HHHcCCCEECCEEEEE
Confidence 3457899999999999999999999999999999999998 899999999999999999999 9999999999999988
Q ss_pred CC
Q 029987 174 DT 175 (184)
Q Consensus 174 ~~ 175 (184)
.-
T Consensus 100 ~~ 101 (115)
T 2cpz_A 100 QL 101 (115)
T ss_dssp EC
T ss_pred EE
Confidence 64
No 9
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=121.85 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=72.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
.+.++|||+|||+++++++|+++|++||+|..+.++.++ ++.++|||||+|.+.++|++| ++.|||..+.++.|.|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA--IQQMGGQWLGGRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH--HHHHTTCEETTEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHH--HHHcCCCEECCeEEEEE
Confidence 457899999999999999999999999999999999997 999999999999999999999 99999999999998876
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
-
T Consensus 82 ~ 82 (87)
T 3bs9_A 82 W 82 (87)
T ss_dssp E
T ss_pred e
Confidence 3
No 10
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=125.00 Aligned_cols=81 Identities=19% Similarity=0.147 Sum_probs=75.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
...+.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| |+.|||..+.++.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~ 81 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA--YAEVDGQVFQGRMLH 81 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHH--HHHTTTEESSSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHH--HHHhCCCEECCcEEE
Confidence 34567899999999999999999999999999999999998 999999999999999999999 999999999999998
Q ss_pred eCCC
Q 029987 173 SDTI 176 (184)
Q Consensus 173 ~~~~ 176 (184)
|...
T Consensus 82 V~~a 85 (99)
T 1whw_A 82 VLPS 85 (99)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8643
No 11
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=124.13 Aligned_cols=79 Identities=20% Similarity=0.241 Sum_probs=74.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
++.++|||+|||+++++++|+++|++||+|..|.|..++ +++++|||||+|.+.++|++| |+.|||..+.++.|.|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA--LEQLNGFELAGRPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHH--HHHHTTCCSSSSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHH--HHHhCCCeeCCcEEEEE
Confidence 467899999999999999999999999999999999988 799999999999999999999 99999999999998876
Q ss_pred CC
Q 029987 175 TI 176 (184)
Q Consensus 175 ~~ 176 (184)
..
T Consensus 81 ~a 82 (95)
T 2dnz_A 81 HV 82 (95)
T ss_dssp ES
T ss_pred Ec
Confidence 43
No 12
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=123.46 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=74.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
....++|||+|||+.+++++|+++|++||+|..|.|..++++.++|||||+|.+.++|++| ++.|||..+.++.|.|.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYA--IALLNGIRLYGRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHH--HHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHH--HHHhCCCEECCCEEEEE
Confidence 3457899999999999999999999999999999999999999999999999999999999 99999999999999886
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
.
T Consensus 91 ~ 91 (95)
T 2ywk_A 91 G 91 (95)
T ss_dssp C
T ss_pred E
Confidence 4
No 13
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-19 Score=123.02 Aligned_cols=80 Identities=19% Similarity=0.119 Sum_probs=74.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
.++.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| ++.|||..+.++.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA--KERANGMELDGRRIRV 89 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHH--HHHHTTEEETTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHH--HHHhCCCEECCEEEEE
Confidence 3467899999999999999999999999999999999998 789999999999999999999 9999999999999988
Q ss_pred CCC
Q 029987 174 DTI 176 (184)
Q Consensus 174 ~~~ 176 (184)
.-.
T Consensus 90 ~~a 92 (95)
T 2cqc_A 90 SGP 92 (95)
T ss_dssp ECC
T ss_pred Eec
Confidence 643
No 14
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1.6e-19 Score=121.59 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=73.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
..+.++|||+|||+++++++|+++|++||+|..+.|+.++ ++.++|||||+|.+.++|++| ++.|||..+.++.|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~v 81 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA--IDNMNESELFGRTIRV 81 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHH--HHHHTTCEETTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHH--HHHhCCCEECCcEEEE
Confidence 3467899999999999999999999999999999999886 889999999999999999999 9999999999999887
Q ss_pred C
Q 029987 174 D 174 (184)
Q Consensus 174 ~ 174 (184)
.
T Consensus 82 ~ 82 (85)
T 3mdf_A 82 N 82 (85)
T ss_dssp E
T ss_pred E
Confidence 5
No 15
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=122.92 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=73.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
.++.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| ++.|||..+.++.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC--TRAINNKQLFGRVIKA 90 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHH--HHHTTTEEETTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHH--HHHcCCCeeCCcEEEE
Confidence 3467899999999999999999999999999999999988 789999999999999999999 9999999999999987
Q ss_pred C
Q 029987 174 D 174 (184)
Q Consensus 174 ~ 174 (184)
.
T Consensus 91 ~ 91 (94)
T 2e5h_A 91 S 91 (94)
T ss_dssp E
T ss_pred E
Confidence 5
No 16
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=127.51 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=77.2
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCe
Q 029987 91 GISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHL 169 (184)
Q Consensus 91 ~~~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~ 169 (184)
.....++.++|||+|||+.+++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| ++.|||..+.|+
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A--i~~l~g~~i~g~ 96 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA--LEQLNGFELAGR 96 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHH--HHHHTTCCSSSS
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH--HHHcCCCEECCE
Confidence 44556678899999999999999999999999999999999987 899999999999999999999 999999999999
Q ss_pred EEeeCCC
Q 029987 170 QLLSDTI 176 (184)
Q Consensus 170 ~l~~~~~ 176 (184)
.|.|...
T Consensus 97 ~l~V~~a 103 (108)
T 2jrs_A 97 PMKVGHV 103 (108)
T ss_dssp CCEEECS
T ss_pred EEEEEEc
Confidence 9888643
No 17
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=123.73 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=74.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
..+.++|||+|||+++++++|+++|++||+|..|.|+.+++++++|||||+|.+.++|++| ++.|||..+.++.|.|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA--VMKMDGMTIKENIIKVA 91 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHH--HHHHTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHH--HHHhCCCEECCEEEEEE
Confidence 3457899999999999999999999999999999999999999999999999999999999 99999999999998886
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
.
T Consensus 92 ~ 92 (100)
T 2do4_A 92 I 92 (100)
T ss_dssp E
T ss_pred E
Confidence 4
No 18
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=124.92 Aligned_cols=80 Identities=20% Similarity=0.187 Sum_probs=74.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
..+.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| |+.|||..+.++.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARA--IAGVSGFGYDHLILNV 89 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHH--HHHTTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHH--HHHcCCCeeCCcEEEE
Confidence 3457899999999999999999999999999999999997 899999999999999999999 9999999999999888
Q ss_pred CCC
Q 029987 174 DTI 176 (184)
Q Consensus 174 ~~~ 176 (184)
.-.
T Consensus 90 ~~a 92 (103)
T 2cq0_A 90 EWA 92 (103)
T ss_dssp EES
T ss_pred EEC
Confidence 643
No 19
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=4.1e-19 Score=119.02 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=71.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 99 ~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
++|||+|||+++++++|+++|++||+|..+.++.++ ++.++|||||+|.+.++|++| ++.|||..+.++.|.|.-
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a--~~~l~g~~~~g~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA--MDSMQGQDLNGRPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH--HHHHTTCEETTEECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHH--HHHhcCCeeCCcEEEEEe
Confidence 589999999999999999999999999999999997 899999999999999999999 999999999999988764
No 20
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=123.89 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=74.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeE--------EEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCC
Q 029987 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR--------YAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMP 163 (184)
Q Consensus 93 ~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~--------v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g 163 (184)
....+.++|||+|||+++++++|+++|++||.|.. +.|+.++ +|+++|||||+|.+.++|++| ++.|||
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~A--i~~l~g 85 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAA--IDWFDG 85 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHH--HHHHTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHH--HHHhCC
Confidence 44556889999999999999999999999999999 9999997 899999999999999999999 999999
Q ss_pred CeecCeEEeeC
Q 029987 164 EEVMHLQLLSD 174 (184)
Q Consensus 164 ~~~~g~~l~~~ 174 (184)
..+.++.|.|.
T Consensus 86 ~~~~g~~l~V~ 96 (99)
T 2la6_A 86 KEFSGNPIKVS 96 (99)
T ss_dssp CBSSSSBCEEE
T ss_pred CEeCCcEEEEE
Confidence 99999988775
No 21
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=125.98 Aligned_cols=80 Identities=16% Similarity=0.075 Sum_probs=74.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
...+.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| |+.|||..+.++.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDA--EAAMDGAELDGRELR 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHH--HHHHSSCCBTTBCCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHH--HHHcCCCEECCcEEE
Confidence 34567899999999999999999999999999999999988 799999999999999999999 999999999999888
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|..
T Consensus 87 V~~ 89 (103)
T 2dnm_A 87 VQV 89 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 22
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=7.7e-20 Score=125.02 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=70.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccC--CeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 99 TKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 99 ~~l~V~nL~~~vt~~~l~~~F~~~G--~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
.+|||+|||+++++++|+++|++|| +|..+.|+.++ +|+++|||||+|.+.++|++| |+.|||..+.|+.|.|..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~A--i~~l~g~~~~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKL--MDLLPKRELHGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHH--HHHGGGSCSSSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHH--HHHcCCCeeCCEEEEEEE
Confidence 4799999999999999999999999 99999999998 999999999999999999999 999999999999998875
Q ss_pred Cc
Q 029987 176 IM 177 (184)
Q Consensus 176 ~~ 177 (184)
..
T Consensus 80 ~~ 81 (90)
T 3p5t_L 80 SN 81 (90)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 23
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.2e-19 Score=125.56 Aligned_cols=79 Identities=19% Similarity=0.242 Sum_probs=74.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
..+.++|||+|||+++++++|+++|++||+|..|.|+.+++++++|||||+|.+.++|++| |+.|||..+.++.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQA--ISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHH--HHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHH--HHHhCCCEeCCCEEEEE
Confidence 3457899999999999999999999999999999999999999999999999999999999 99999999999998886
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
-
T Consensus 90 ~ 90 (114)
T 2do0_A 90 M 90 (114)
T ss_dssp E
T ss_pred E
Confidence 3
No 24
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=6e-20 Score=126.19 Aligned_cols=76 Identities=14% Similarity=0.227 Sum_probs=69.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHh-CCCeecCeEEeeC
Q 029987 98 GTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWY-MPEEVMHLQLLSD 174 (184)
Q Consensus 98 ~~~l~V~nL~~~vt~~~l~~~F~~~G-~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l-~g~~~~g~~l~~~ 174 (184)
+++|||+|||+++|+++|+++|++|| +|..|.|+.|+ ++.++|||||+|.+.++|++| |+.+ ++..+.|++|.|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~A--i~~~~~~~~~~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRW--MEANQHSLNILGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHH--HHTTTTEEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHH--HHhcCCCeEECCEEEEEE
Confidence 36899999999999999999999999 89999999998 899999999999999999999 9887 4568999999886
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
-
T Consensus 79 ~ 79 (91)
T 2lxi_A 79 Y 79 (91)
T ss_dssp C
T ss_pred E
Confidence 3
No 25
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=123.35 Aligned_cols=79 Identities=14% Similarity=0.234 Sum_probs=73.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
...+.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| |+ ||+..+.++.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A--~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA--VN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHH--HH-HCCCBSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHH--HH-hCCCEECCeEEE
Confidence 44567899999999999999999999999999999999998 899999999999999999999 88 999999999888
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|..
T Consensus 83 V~~ 85 (99)
T 2dgs_A 83 VKR 85 (99)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 26
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=125.50 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=74.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
...+.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| |+.|||..+.++.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA--IKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHH--HHHSSSCBCSSCBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHH--HHHhCCCeECCeEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999 999999999999888
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|..
T Consensus 89 v~~ 91 (105)
T 1x5u_A 89 VNK 91 (105)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 27
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=123.33 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=74.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEE-EEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v-~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
.+.++|||+|||+++++++|+++|++||+|..+ .|+.++ ++.++|||||+|.+.++|++| |+.|||..+.++.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAA--IEAMNGQYLCNRPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHH--HHTTTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHH--HHHcCCCEECCEEEEE
Confidence 457899999999999999999999999999999 999996 899999999999999999999 9999999999999888
Q ss_pred CCC
Q 029987 174 DTI 176 (184)
Q Consensus 174 ~~~ 176 (184)
...
T Consensus 81 ~~a 83 (96)
T 1x5t_A 81 SYA 83 (96)
T ss_dssp EES
T ss_pred EEe
Confidence 643
No 28
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=6.7e-19 Score=125.28 Aligned_cols=80 Identities=15% Similarity=0.158 Sum_probs=74.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
.....++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++| |+.|||..+.++.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA--IQQMGGQWLGGRQIR 88 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH--HHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHH--HHHhCCCEECCEEEE
Confidence 34567899999999999999999999999999999999997 899999999999999999999 999999999999988
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|.-
T Consensus 89 V~~ 91 (115)
T 2dgo_A 89 TNW 91 (115)
T ss_dssp EEE
T ss_pred EEE
Confidence 763
No 29
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=124.60 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=74.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
...+.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| |+.||+..+.++.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA--MMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHH--HHHHTTCCTTSCCCE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHH--HHHhCCCEECCeEEE
Confidence 44567899999999999999999999999999999999888 889999999999999999999 999999999999888
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|..
T Consensus 86 v~~ 88 (102)
T 1x5s_A 86 VDQ 88 (102)
T ss_dssp EEE
T ss_pred EEE
Confidence 763
No 30
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=4.4e-19 Score=122.43 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=72.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
+.++|||+|||+++++++|+++|++||.|..|.|..++ +|.++|||||+|.+.++|++| ++.|||..+.++.|.|.-
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A--i~~l~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA--VRNLNGYQLGSRFLKCGY 78 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHH--HHHHTTCEETTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHH--HHHhCCCeECCeEEEEEE
Confidence 36799999999999999999999999999999999998 899999999999999999999 999999999999988863
No 31
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=4.6e-19 Score=124.06 Aligned_cols=77 Identities=16% Similarity=0.234 Sum_probs=72.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecC---eEEe
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMH---LQLL 172 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g---~~l~ 172 (184)
...++|||+|||+++++++|+++|++||+|..|.|+.++++.++|||||+|.+.++|++| |+.|||..+.+ +.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A--i~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAA--IHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHH--HHHHSSCCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHH--HHHHcCCccCCCCCccEE
Confidence 457899999999999999999999999999999999999999999999999999999999 99999999987 7777
Q ss_pred eC
Q 029987 173 SD 174 (184)
Q Consensus 173 ~~ 174 (184)
|.
T Consensus 91 V~ 92 (105)
T 2dnh_A 91 VK 92 (105)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 32
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.8e-19 Score=124.59 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=74.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
...+.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| |+.|||..+.++.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA--IDNMNESELFGRTIR 85 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHH--HHHHTTEEETTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHH--HHHhCCCEECCcEEE
Confidence 34567899999999999999999999999999999999987 899999999999999999999 999999999999998
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|.-
T Consensus 86 V~~ 88 (102)
T 2cqb_A 86 VNL 88 (102)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
No 33
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-19 Score=122.68 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=73.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
.+.++|||+|||+++++++|+++|++||+|..+.|+.++ ++.++|||||+|.+.++|++| ++.|||..+.++.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKA--VTALKASGVQAQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHH--HHHHHHHTCCEESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHH--HHHhcCCeEeeEEEeec
Confidence 467899999999999999999999999999999999997 899999999999999999999 99999999999988776
Q ss_pred CC
Q 029987 175 TI 176 (184)
Q Consensus 175 ~~ 176 (184)
.+
T Consensus 81 ~~ 82 (85)
T 1x4e_A 81 GP 82 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 34
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.4e-19 Score=124.79 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=75.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhC------CCee
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYM------PEEV 166 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~------g~~~ 166 (184)
...+.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| |+.|| +..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A--~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKC--LAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHH--HHHHCTTTTTCCEES
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHH--HHHhccccccCCcEE
Confidence 44567899999999999999999999999999999999998 899999999999999999999 99999 9999
Q ss_pred cCeEEeeCCC
Q 029987 167 MHLQLLSDTI 176 (184)
Q Consensus 167 ~g~~l~~~~~ 176 (184)
.++.|.|...
T Consensus 89 ~g~~l~v~~a 98 (111)
T 1x4h_A 89 DGRQLKVDLA 98 (111)
T ss_dssp SSCEEEEECC
T ss_pred cCEEEEEEEC
Confidence 9999988754
No 35
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.3e-19 Score=124.43 Aligned_cols=80 Identities=21% Similarity=0.323 Sum_probs=74.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
.....++|||+|||+++++++|+++|++||+|..|.|..++ ++.++|||||+|.+.++|++| ++.|||..+.++.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA--MEGLNGQDLMGQPIS 96 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHH--HHHHTTCBSSSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHH--HHHhcCCEECCcEEE
Confidence 34467899999999999999999999999999999999998 799999999999999999999 999999999999888
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|.-
T Consensus 97 V~~ 99 (106)
T 1p27_B 97 VDW 99 (106)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
No 36
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=5.2e-19 Score=124.89 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEE
Q 029987 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQL 171 (184)
Q Consensus 93 ~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l 171 (184)
......++|||+|||+++++++|+++|++||+|..|.|+.++ +|.++|||||+|.+.++|++| |+.|||..+.++.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A--i~~l~g~~~~g~~l 98 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAA--KEALNGAEIMGQTI 98 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHH--HHHHTTCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHH--HHHcCCCEECCcEE
Confidence 344567899999999999999999999999999999999987 899999999999999999999 99999999999998
Q ss_pred eeCC
Q 029987 172 LSDT 175 (184)
Q Consensus 172 ~~~~ 175 (184)
.|.-
T Consensus 99 ~V~~ 102 (110)
T 1oo0_B 99 QVDW 102 (110)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8864
No 37
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=8.8e-20 Score=127.32 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=72.6
Q ss_pred CCcEEEEeCCCC------CCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecC-
Q 029987 97 VGTKLYVSNLHP------GVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMH- 168 (184)
Q Consensus 97 ~~~~l~V~nL~~------~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g- 168 (184)
..++|||+|||+ ++++++|+++|++||+|..|.|+.++ +|+++|||||+|.+.++|++| |+.|||..+.+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~A--i~~lng~~~~g~ 82 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKI--IKSFHGKRLDLK 82 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHH--HHHHTTCBSSSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHH--HHHhCCcccCCC
Confidence 467999999999 99999999999999999999999999 799999999999999999999 99999999999
Q ss_pred eEEeeCC
Q 029987 169 LQLLSDT 175 (184)
Q Consensus 169 ~~l~~~~ 175 (184)
+.|.|..
T Consensus 83 r~l~V~~ 89 (100)
T 3ns6_A 83 HRLFLYT 89 (100)
T ss_dssp CBCEEEE
T ss_pred eEEEEEE
Confidence 8888764
No 38
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=9.5e-19 Score=118.44 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=71.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
...+.++|||+|||+++++++|+++|++||+|..|.|+.++ +++++|||||+|.+.++|++| ++ +++..+.|+.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A--~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV--LD-QKEHRLDGRVID 83 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHH--HH-SSCEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHH--HH-hCCCEECCEEEE
Confidence 44567899999999999999999999999999999999998 899999999999999999999 85 488899999988
Q ss_pred eC
Q 029987 173 SD 174 (184)
Q Consensus 173 ~~ 174 (184)
|.
T Consensus 84 v~ 85 (87)
T 3s7r_A 84 PK 85 (87)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 39
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=3.6e-19 Score=124.85 Aligned_cols=81 Identities=12% Similarity=0.211 Sum_probs=73.9
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCee---cC
Q 029987 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEV---MH 168 (184)
Q Consensus 93 ~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~---~g 168 (184)
....+.++|||+|||+++++++|+++|++||+|..|.|+.++ +++++|||||+|.+.++|++| |+.|||..+ .+
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A--~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA--QSALHEQKTLPGMN 85 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHH--HHHHTTTCCCTTCS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHH--HHHhcCCcccCCCC
Confidence 344567899999999999999999999999999999999988 799999999999999999999 999999987 78
Q ss_pred eEEeeCC
Q 029987 169 LQLLSDT 175 (184)
Q Consensus 169 ~~l~~~~ 175 (184)
+.|.|..
T Consensus 86 ~~l~v~~ 92 (106)
T 2dgp_A 86 RPIQVKP 92 (106)
T ss_dssp SCCEEEE
T ss_pred ceEEEEE
Confidence 8877753
No 40
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=121.02 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=73.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
.....++|||+|||+++++++|+++|++||+|..|.|+.++.+ ++|||||+|.+.++|++| |+.|||..+.++.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRA--REKLHGTVVEGRKIEV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHH--HHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHH--HHHhCCCEECCEEEEE
Confidence 3446789999999999999999999999999999999988754 899999999999999999 9999999999999888
Q ss_pred CCC
Q 029987 174 DTI 176 (184)
Q Consensus 174 ~~~ 176 (184)
...
T Consensus 88 ~~a 90 (103)
T 2cq3_A 88 NNA 90 (103)
T ss_dssp EEC
T ss_pred EEc
Confidence 644
No 41
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.4e-19 Score=122.44 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=72.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCee-EEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeE--
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELK-RYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQ-- 170 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~-~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~-- 170 (184)
....++|||+|||+++++++|+++|++||+|. .|.|+.++ ++.++|||||+|.+.++|++| ++.|||..+.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC--LHKINGKPLPGATPA 83 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHH--HHTTTTSEESSCSSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHH--HHHHcCCccCCCCcc
Confidence 34678999999999999999999999999999 99999998 899999999999999999999 9999999999888
Q ss_pred --EeeC
Q 029987 171 --LLSD 174 (184)
Q Consensus 171 --l~~~ 174 (184)
|.|+
T Consensus 84 ~~l~v~ 89 (99)
T 2div_A 84 KRFKLN 89 (99)
T ss_dssp EECCEE
T ss_pred eeEEEe
Confidence 6654
No 42
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=2.5e-19 Score=123.11 Aligned_cols=79 Identities=13% Similarity=0.023 Sum_probs=71.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
++.++|||+|||+++++++|+++|++||.|..+.++.++ +++++|||||+|.+.++|++| |+.||+..+.++.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~A--i~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA--VIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHH--HHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHH--HHHhCCCeECCcEEEEE
Confidence 356899999999999999999999999999988887776 889999999999999999999 99999999999999886
Q ss_pred CC
Q 029987 175 TI 176 (184)
Q Consensus 175 ~~ 176 (184)
..
T Consensus 91 ~a 92 (95)
T 2ek1_A 91 GP 92 (95)
T ss_dssp CC
T ss_pred ec
Confidence 43
No 43
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=7.1e-19 Score=120.17 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=72.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
...+.++|||+|||+++++++|+++|++||+|..+.|..+ ++.++|||||+|.+.++|++| ++.|||..+.++.|.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a--~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERA--CRMMNGMKLSGREIDV 80 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHH--HHHHTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHH--HHHhCCCEECCcEEEE
Confidence 4456889999999999999999999999999999999874 788999999999999999999 9999999999998877
Q ss_pred CC
Q 029987 174 DT 175 (184)
Q Consensus 174 ~~ 175 (184)
..
T Consensus 81 ~~ 82 (92)
T 2dgv_A 81 RI 82 (92)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 44
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3e-19 Score=125.61 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=70.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
..++|||+|||+++|+++|+++|++||+|..|.|+.++.|.++|||||+|.+.++|++| |. +++..+.|+.|.|.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~A--i~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKF--VE-TPGQKYKETDLLIL 84 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHH--HT-SSCCCCTTTTCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHH--HH-cCCCEECCEEEEEE
Confidence 46799999999999999999999999999999999998899999999999999999999 88 89999999988775
No 45
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=6.4e-19 Score=125.91 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=74.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
..+..++|||+|||+++++++|+++|++||+|..|.|+.++ +++++|||||+|.+.++|++| |+.|||..+.++.|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVA--IKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHH--HHHCCCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHH--HHHcCCCEECCEEEE
Confidence 34567899999999999999999999999999999999987 899999999999999999999 999999999999988
Q ss_pred eC
Q 029987 173 SD 174 (184)
Q Consensus 173 ~~ 174 (184)
|.
T Consensus 114 V~ 115 (118)
T 2khc_A 114 VQ 115 (118)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 46
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4e-19 Score=122.88 Aligned_cols=80 Identities=14% Similarity=0.035 Sum_probs=72.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
..+..++|||+|||+++++++|+++|++||.|..+.++.++ +|+++|||||+|.+.++|++| |+.|||..+.++.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~A--i~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA--VIDLNDRPIGSRKVK 88 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHH--HHHTTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHH--HHHhCCCeeCCeEEE
Confidence 34457899999999999999999999999999887777776 899999999999999999999 999999999999988
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|..
T Consensus 89 V~~ 91 (98)
T 2cqp_A 89 LVL 91 (98)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 47
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.2e-18 Score=121.65 Aligned_cols=78 Identities=21% Similarity=0.164 Sum_probs=72.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
...+.++|||+|||+++++++|+++|++|| |..|.|+.++ +++++|||||+|.+.++|++| | .|||..+.++.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A--~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEA--L-TYDGALLGDRSLR 86 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHH--G-GGTTCEETTEECE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHH--H-hhCCCeECCeEEE
Confidence 345678999999999999999999999997 9999999998 899999999999999999999 9 9999999999988
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|..
T Consensus 87 V~~ 89 (103)
T 2dng_A 87 VDI 89 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 48
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=7.6e-19 Score=122.75 Aligned_cols=80 Identities=14% Similarity=0.066 Sum_probs=74.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhc-cCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCe-ecCeEEe
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSE-IGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEE-VMHLQLL 172 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~-~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~-~~g~~l~ 172 (184)
..+.++|||+|||+++++++|+++|++ ||+|..|.|+.++++.++|||||+|.+.++|++| |+.|||.. +.++.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A--~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRA--LTECQGAVGLGSKPVR 83 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHH--HHHTTTCCSSSSSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHH--HHHccCCcccCCEeEE
Confidence 346789999999999999999999999 9999999999999999999999999999999999 99999999 9999888
Q ss_pred eCCC
Q 029987 173 SDTI 176 (184)
Q Consensus 173 ~~~~ 176 (184)
|...
T Consensus 84 v~~a 87 (104)
T 2dhg_A 84 LSVA 87 (104)
T ss_dssp CCBC
T ss_pred EEEc
Confidence 7643
No 49
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=5e-19 Score=127.87 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=75.7
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeE
Q 029987 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQ 170 (184)
Q Consensus 92 ~~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~ 170 (184)
+......++|||+|||+++|+++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| |+.|||..|.++.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAA--MEGLNGQDLMGQP 93 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHH--HHHHTTCBSSSSB
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHH--HHHhCCCeeCCeE
Confidence 3445567899999999999999999999999999999999998 999999999999999999999 9999999999998
Q ss_pred EeeCC
Q 029987 171 LLSDT 175 (184)
Q Consensus 171 l~~~~ 175 (184)
|.|.-
T Consensus 94 l~v~~ 98 (126)
T 3ex7_B 94 ISVDW 98 (126)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 88763
No 50
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=6.4e-19 Score=126.23 Aligned_cols=80 Identities=10% Similarity=0.104 Sum_probs=74.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
....++|||+|||+++++++|+++|++||.|..|.|..++++.++|||||+|.+.++|++| |+.|||..+.++.|.|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~A--i~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNA--AKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHH--HHHCSSCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHH--HHHhCCCEECCEEEEEE
Confidence 3457899999999999999999999999999999999999999999999999999999999 99999999999988876
Q ss_pred CC
Q 029987 175 TI 176 (184)
Q Consensus 175 ~~ 176 (184)
..
T Consensus 82 ~a 83 (116)
T 2fy1_A 82 QA 83 (116)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 51
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7.4e-19 Score=122.71 Aligned_cols=78 Identities=21% Similarity=0.281 Sum_probs=73.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
....++|||+|||+++++++|+++|++||+|..|.|..+ ++.++|||||+|.+.++|++| |+.|||..+.++.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKA--VTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHH--HHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHH--HHHhCCCEeCCcEEEEE
Confidence 346789999999999999999999999999999999988 899999999999999999999 99999999999988876
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
-
T Consensus 89 ~ 89 (103)
T 2d9p_A 89 L 89 (103)
T ss_dssp E
T ss_pred E
Confidence 3
No 52
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=1.5e-18 Score=117.68 Aligned_cols=76 Identities=21% Similarity=0.230 Sum_probs=72.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCCC
Q 029987 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDTI 176 (184)
Q Consensus 98 ~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~~ 176 (184)
.++|||+|||+++++++|+++|++||+|..+.+..++ +++++|||||+|.+.++|++| + .|||..+.++.|.|...
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a--~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTS--L-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHH--G-GGTTCEETTEECEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHH--H-hcCCCEECCcEEEEEEc
Confidence 5699999999999999999999999999999999998 999999999999999999999 9 99999999999988643
No 53
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.7e-19 Score=123.20 Aligned_cols=80 Identities=21% Similarity=0.192 Sum_probs=74.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeC-C-CCCCceEEEEEeCChHHHHHHHHHHHh-CCCeecCeE
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFD-K-NGRPSVSSVACFATFSPLFLWVQLKWY-MPEEVMHLQ 170 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d-~-~g~~~G~afV~f~~~~~a~~A~~i~~l-~g~~~~g~~ 170 (184)
.....++|||+|||+++++++|+++|++||+|..|.|+.+ + ++.++|||||+|.+.++|++| |..| |+..+.++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A--~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA--FNALCHSTHLYGRR 88 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHH--HHHHHTCCBSSSCB
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHH--HHHhccCCeECCCE
Confidence 3456789999999999999999999999999999999998 4 899999999999999999999 9999 999999998
Q ss_pred EeeCC
Q 029987 171 LLSDT 175 (184)
Q Consensus 171 l~~~~ 175 (184)
|.|.-
T Consensus 89 l~v~~ 93 (107)
T 2cph_A 89 LVLEW 93 (107)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 88763
No 54
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=8.3e-19 Score=132.11 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=73.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccC--CeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G--~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
..++|||+|||+++|+++|+++|+.|| +|..|.|+.|+ +|+++|||||+|.+.++|++| |+.|||..|.|+.|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~A--i~~lng~~~~Gr~l~V 131 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKL--LELLPGKVLNGEKVDV 131 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH--HHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHH--HHHcCCCEECCeEeEE
Confidence 467999999999999999999999999 99999999998 999999999999999999999 9999999999999988
Q ss_pred CCC
Q 029987 174 DTI 176 (184)
Q Consensus 174 ~~~ 176 (184)
...
T Consensus 132 ~~a 134 (156)
T 3n9u_C 132 RPA 134 (156)
T ss_dssp EEC
T ss_pred EEc
Confidence 744
No 55
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=122.42 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=74.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
.+..++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| |.. ++..|.++.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a--~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV--LAS-RPHTLDGRNIDP 89 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHH--HHH-CSEEETTEEEBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHH--HHh-CCCeECCEEEEE
Confidence 4467899999999999999999999999999999999997 899999999999999999999 888 999999999998
Q ss_pred CCCc
Q 029987 174 DTIM 177 (184)
Q Consensus 174 ~~~~ 177 (184)
....
T Consensus 90 ~~a~ 93 (105)
T 2dh8_A 90 KPCT 93 (105)
T ss_dssp CCSC
T ss_pred EEcc
Confidence 7543
No 56
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.5e-19 Score=124.09 Aligned_cols=81 Identities=21% Similarity=0.352 Sum_probs=74.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCee--------EEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCC
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELK--------RYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPE 164 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~--------~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~ 164 (184)
.....++|||+|||+++++++|+++|++||.|. .|.|+.++ +++++|||||+|.+.++|++| |+.|||.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A--i~~l~g~ 88 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAA--VEWFDGK 88 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHH--HHHHTTC
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHH--HHHcCCC
Confidence 344678999999999999999999999999998 69999996 899999999999999999999 9999999
Q ss_pred eecCeEEeeCCC
Q 029987 165 EVMHLQLLSDTI 176 (184)
Q Consensus 165 ~~~g~~l~~~~~ 176 (184)
.+.++.|.|...
T Consensus 89 ~~~g~~l~V~~a 100 (113)
T 2cpe_A 89 DFQGSKLKVSLA 100 (113)
T ss_dssp EETTEECEEECS
T ss_pred ccCCCEEEEEEC
Confidence 999999988654
No 57
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.4e-19 Score=121.00 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=72.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCC--C--CCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEE
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKN--G--RPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQL 171 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~--g--~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l 171 (184)
.+.++|||+|||+++++++|+++|++||+|..|.|+.++. | .++|||||+|.+.++|++| |+.|||..+.++.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA--LKQLQGHTVDGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHH--HHHSTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHH--HHHhCCCeeCCeEE
Confidence 4678999999999999999999999999999999988763 4 8899999999999999999 99999999999999
Q ss_pred eeCCC
Q 029987 172 LSDTI 176 (184)
Q Consensus 172 ~~~~~ 176 (184)
.|...
T Consensus 81 ~V~~a 85 (98)
T 2cpf_A 81 EVRIS 85 (98)
T ss_dssp EEECS
T ss_pred EEEEc
Confidence 88654
No 58
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=7.3e-19 Score=128.34 Aligned_cols=80 Identities=20% Similarity=0.135 Sum_probs=74.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
.++.++|||+|||+++++++|+++|++||+|..|.|+.++ +++++|||||+|.+.++|++| |+.|||..|.++.|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~A--i~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA--KERANGMELDGRRIRV 120 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHH--HHHHTTCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHH--HHHhCCCEECCEEEEE
Confidence 3467899999999999999999999999999999999998 889999999999999999999 9999999999999888
Q ss_pred CCC
Q 029987 174 DTI 176 (184)
Q Consensus 174 ~~~ 176 (184)
.-.
T Consensus 121 ~~a 123 (129)
T 2kxn_B 121 DFS 123 (129)
T ss_dssp SCC
T ss_pred EEe
Confidence 643
No 59
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=124.17 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=73.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
...+.++|||+|||+++++++|+++|++||+|..|.|+.++ +++++|||||+|.+.++|++| |+.+++ .+.++.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A--i~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA--CKDPNP-IIDGRKAN 89 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHH--HTCSSC-EETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHH--HHhCCC-cCCCEEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999 999998 89999988
Q ss_pred eCCC
Q 029987 173 SDTI 176 (184)
Q Consensus 173 ~~~~ 176 (184)
|.-.
T Consensus 90 V~~a 93 (116)
T 2cqd_A 90 VNLA 93 (116)
T ss_dssp EEES
T ss_pred EEEc
Confidence 8643
No 60
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=122.08 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=71.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-C-CCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N-GRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~-g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
..+.++|||+|||+++++++|+++|++|| |..|.|+.++ + ++++|||||+|.+.++|++| | .||+..+.++.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A--~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA--L-SLNEESLGNKRIR 87 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHH--H-GGGTCEETTEECE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHH--H-hcCCCEeCCcEEE
Confidence 34578999999999999999999999999 9999999998 5 89999999999999999999 9 9999999999988
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|..
T Consensus 88 V~~ 90 (104)
T 1wi8_A 88 VDV 90 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 61
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-18 Score=119.85 Aligned_cols=79 Identities=20% Similarity=0.144 Sum_probs=72.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
.....++|||+|||+++++++|+++|++||+|..|.|+.++.+ ++|||||+|.+.++|++| |+.|||..+.++.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAA--LAAMNGRKILGKEVKV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHH--HHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHH--HHHhCCCCcCCCeEEE
Confidence 3456789999999999999999999999999999999988743 689999999999999999 9999999999999988
Q ss_pred CC
Q 029987 174 DT 175 (184)
Q Consensus 174 ~~ 175 (184)
.-
T Consensus 88 ~~ 89 (103)
T 2cqi_A 88 NW 89 (103)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 62
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=119.85 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=72.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeE
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQ 170 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~----~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~ 170 (184)
....++|||+|||+++++++|+ ++|++||+|..|.|+.++.+ +|||||+|.+.++|++| |+.|||..+.++.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~A--i~~l~g~~~~gr~ 81 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGA--VNSLHRYKIGSKK 81 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHH--HHHHTTEEETTEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHH--HHHhCCCEECCeE
Confidence 4467899999999999999999 99999999999999988854 78999999999999999 9999999999999
Q ss_pred EeeCCC
Q 029987 171 LLSDTI 176 (184)
Q Consensus 171 l~~~~~ 176 (184)
|.|...
T Consensus 82 l~V~~a 87 (96)
T 2dgx_A 82 ILVSLA 87 (96)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 988743
No 63
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-19 Score=119.46 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=67.9
Q ss_pred CcEEEEeCCCCCC------CHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCe-E
Q 029987 98 GTKLYVSNLHPGV------TNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHL-Q 170 (184)
Q Consensus 98 ~~~l~V~nL~~~v------t~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~-~ 170 (184)
+++|||+|||+.+ ++++|+++|++||+|..+.|. ..+|+++|||||+|.+.++|++| |+.|||..+.++ +
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~A--i~~lng~~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDA--VKNADGYKLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHH--HTTSSSCCCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHH--HHHhcCcccCCcee
Confidence 3689999999999 789999999999999999887 45889999999999999999999 999999999999 8
Q ss_pred EeeC
Q 029987 171 LLSD 174 (184)
Q Consensus 171 l~~~ 174 (184)
|.|+
T Consensus 78 l~V~ 81 (81)
T 2krb_A 78 FRVN 81 (81)
T ss_dssp CCCC
T ss_pred EEeC
Confidence 7663
No 64
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.7e-19 Score=123.48 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=69.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
...++|||+|||+++|+++|+++|++||. ..|.|+.|++++++|||||+|.+.++|++| | ++|+..|.++.|.|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~A--l-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAA--M-AKDKANMQHRYVELFL 88 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHH--H-TTSSCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHH--H-HhCCCeECCcEEEEEE
Confidence 45679999999999999999999999995 599999999999999999999999999999 8 5799999999887754
No 65
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=117.48 Aligned_cols=77 Identities=12% Similarity=-0.018 Sum_probs=72.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
....++|||+|||+++++++|+++|+.| .|..|.|+.+.+|+++|||||+|.+.++|++| |+ |||..+.++.|.|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A--~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQA--LK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHH--HH-SCSEEETTEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHH--HH-hCCceeCCcEEEEE
Confidence 3467899999999999999999999999 89999999999999999999999999999999 99 99999999999886
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
.
T Consensus 83 ~ 83 (91)
T 2dgw_A 83 R 83 (91)
T ss_dssp E
T ss_pred E
Confidence 4
No 66
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.77 E-value=2.3e-18 Score=128.89 Aligned_cols=81 Identities=20% Similarity=0.212 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEE
Q 029987 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQL 171 (184)
Q Consensus 93 ~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l 171 (184)
....+.++|||+|||+++|+++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| |+.||+..|.++.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A--i~~l~g~~~~g~~l 111 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENA--MRYINGTRLDDRII 111 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH--HHHTTTSEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHH--HHHhCCCEECCeEE
Confidence 344578899999999999999999999999999999999998 799999999999999999999 99999999999998
Q ss_pred eeCC
Q 029987 172 LSDT 175 (184)
Q Consensus 172 ~~~~ 175 (184)
.|.-
T Consensus 112 ~V~~ 115 (156)
T 1h2v_Z 112 RTDW 115 (156)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8864
No 67
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=1.3e-18 Score=125.03 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=72.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCC---eeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGE---LKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~---v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
...++|||+|||+++|+++|+++|+.||. |..|.|+.++.|+++|||||+|.+.++|++| |+ +|+..|.++.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~A--l~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLA--LK-KDRESMGHRYIE 91 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHH--GG-GTTEEETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHH--Hh-cCCCeECCeEEE
Confidence 45789999999999999999999999999 8999999999999999999999999999999 88 999999999988
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|..
T Consensus 92 V~~ 94 (118)
T 2db1_A 92 VFK 94 (118)
T ss_dssp EEE
T ss_pred EEE
Confidence 854
No 68
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.9e-19 Score=124.66 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=73.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCe-eEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGEL-KRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v-~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
....++|||+|||+++|+++|+++|+.||.| ..|.|+.|++|+++|||||+|.+.++|++| |+. |+..|.++.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~A--l~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS--ERL-HRKKLNGREAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHH--GGG-CSEEETTEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHH--HHh-CCCccCCeEEEE
Confidence 3457899999999999999999999999999 889999999999999999999999999999 887 999999999988
Q ss_pred CCC
Q 029987 174 DTI 176 (184)
Q Consensus 174 ~~~ 176 (184)
...
T Consensus 89 ~~a 91 (114)
T 2cpy_A 89 HVV 91 (114)
T ss_dssp EEE
T ss_pred EEC
Confidence 643
No 69
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=118.21 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=71.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCC-CceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGR-PSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~-~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
..++|||+|||+++++++|+++|++||+|..+.|+.++ ++. ++|||||+|.+.++|++| ++.|||..+.|+.|.|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKA--LKHMDGGQIDGQEITAT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHH--HHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHH--HHHcCCCeECCeEEEEE
Confidence 46799999999999999999999999999999998887 444 899999999999999999 99999999999999886
Q ss_pred CC
Q 029987 175 TI 176 (184)
Q Consensus 175 ~~ 176 (184)
..
T Consensus 81 ~a 82 (88)
T 4a8x_A 81 AV 82 (88)
T ss_dssp EE
T ss_pred EC
Confidence 43
No 70
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=122.46 Aligned_cols=77 Identities=18% Similarity=0.147 Sum_probs=70.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeE-EEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~-v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
...++|||+|||+++|+++|+++|++||.|.. |.|+.+.+|+++|||||+|.+.++|++| |+. ++..+.++.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A--~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKA--LKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHH--HTT-TTCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHH--HHh-CcchhCCcEEEEE
Confidence 45789999999999999999999999999987 8888888999999999999999999999 887 9999999987775
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
.
T Consensus 90 ~ 90 (104)
T 1wg5_A 90 K 90 (104)
T ss_dssp E
T ss_pred E
Confidence 3
No 71
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=122.80 Aligned_cols=76 Identities=13% Similarity=0.281 Sum_probs=71.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
..++|||+|||+++++++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|++| | .|||..|.++.|.|..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A--~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLA--I-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHH--H-HHTTEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHH--H-HcCCCEeCCeEEEEEe
Confidence 35799999999999999999999999999999999998 799999999999999999999 9 9999999999998863
No 72
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=126.41 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEE
Q 029987 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQL 171 (184)
Q Consensus 93 ~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l 171 (184)
......++|||+|||+++++++|+++|+.||+|..|.|+.++ +++++|||||+|.+.++|++| |+.|||..+.++.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQA--IAGLNGFNILNKRL 114 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHH--HHHTTTEECSSCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHH--HHHhCCCEECCeEE
Confidence 344567899999999999999999999999999999999998 889999999999999999999 99999999999999
Q ss_pred eeCC
Q 029987 172 LSDT 175 (184)
Q Consensus 172 ~~~~ 175 (184)
.|.-
T Consensus 115 ~v~~ 118 (139)
T 1u6f_A 115 KVAL 118 (139)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8863
No 73
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=1.2e-18 Score=128.45 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=72.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCC---eeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGE---LKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~---v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
...++|||+|||+++|+++|+++|++||. |..|.|+.|+.|+++|||||+|.+.++|++| |+ +|+..|.++.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~A--l~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMA--LK-KDRESMGHRYIE 118 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHH--HT-TTEEESSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHH--Hh-cCCCEECCEEEE
Confidence 35789999999999999999999999999 8899999999999999999999999999999 88 999999999998
Q ss_pred eCCC
Q 029987 173 SDTI 176 (184)
Q Consensus 173 ~~~~ 176 (184)
|...
T Consensus 119 V~~a 122 (136)
T 2hgl_A 119 VFKS 122 (136)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8643
No 74
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=126.22 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=69.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEE-EEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v-~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
...++|||+|||+++|+++|+++|+.||.|..+ .+..+.+|+++|||||+|.+.++|++| |+ +||..|.++.|.|.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~A--l~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAA--LC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHH--HT-SCSBCSTTSCBEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHH--HH-hCCCeECCcEEEEE
Confidence 356899999999999999999999999999884 444455999999999999999999999 88 99999999998886
Q ss_pred CC
Q 029987 175 TI 176 (184)
Q Consensus 175 ~~ 176 (184)
..
T Consensus 100 ~a 101 (124)
T 1wel_A 100 PI 101 (124)
T ss_dssp EE
T ss_pred EC
Confidence 43
No 75
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=4e-18 Score=128.95 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=74.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
...+.++|||+|||+.+++++|+++|++||+|..|.|+.++ +|.++|||||+|.+.++|++| |..|||..|.++.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A--i~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAA--KEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHH--HHHHTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHH--HHHhCCCEECCEEEE
Confidence 34567899999999999999999999999999999999997 999999999999999999999 999999999999988
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|.-
T Consensus 146 V~~ 148 (165)
T 1rk8_A 146 VDW 148 (165)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 76
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=123.24 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=70.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCCCc
Q 029987 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDTIM 177 (184)
Q Consensus 98 ~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~~~ 177 (184)
.++|||+|||+++|+++|+++|+.| .|..|.|+.|++|+++|||||+|.+.++|++| | .+|+..|.++.|.|....
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~A--l-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEA--L-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHH--H-HTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHH--H-hcCCCeECCeEEEEEECC
Confidence 4699999999999999999999999 89999999999999999999999999999999 8 799999999998886543
No 77
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=125.14 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=73.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
.+.++|||+|||+++++++|+++|++||+|..+.|+.++ +++++|||||+|.+.++|++| |+.|||..+.++.|.|.
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA--IDNMNESELFGRTIRVN 138 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHH--HHHSTEEEETTEEEEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHH--HHHhCCCEECCEEEEEE
Confidence 357899999999999999999999999999999999987 899999999999999999999 99999999999999875
No 78
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=121.18 Aligned_cols=76 Identities=9% Similarity=0.014 Sum_probs=67.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCC--CeecCeEEe
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMP--EEVMHLQLL 172 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g--~~~~g~~l~ 172 (184)
.++.++|||+|||+++|+++|+++|++||+|..|.|+.+ +|||||+|++.++|++| |+.|++ ..+.|++|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~A--i~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTM--VNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHH--HHHHTTSCCEETTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHH--HHHhccCCceECCEEEE
Confidence 346789999999999999999999999999999999854 69999999999999999 998864 789999998
Q ss_pred eCCCc
Q 029987 173 SDTIM 177 (184)
Q Consensus 173 ~~~~~ 177 (184)
|+-..
T Consensus 86 V~~A~ 90 (105)
T 1sjq_A 86 IQFSN 90 (105)
T ss_dssp BCCCS
T ss_pred EEEcC
Confidence 87543
No 79
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=4.2e-18 Score=116.16 Aligned_cols=73 Identities=11% Similarity=0.059 Sum_probs=68.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCCC
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDTI 176 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~~ 176 (184)
...-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+| ++.||+.++.+++|.|+-.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~A--i~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKA--QMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHH--HHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHH--HHHhcCCEECCcEEEEEEC
Confidence 467899999999999999999999999999999873 789999999999999999 9999999999999999654
No 80
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=121.78 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=72.1
Q ss_pred CCCCCcEEEEeCCCCCC------CHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeec
Q 029987 94 GIEVGTKLYVSNLHPGV------TNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVM 167 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~v------t~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~ 167 (184)
.....++|||+|||+.+ |+++|+++|++||+|..|.|+ ..+|+++|||||+|.+.++|++| |..|||..+.
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~A--i~~l~g~~~~ 87 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDA--VKNADGYKLD 87 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHH--HHHCSSEECS
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHH--HHHhCCcccC
Confidence 34457899999999999 789999999999999999887 45899999999999999999999 9999999999
Q ss_pred Ce-EEeeCCC
Q 029987 168 HL-QLLSDTI 176 (184)
Q Consensus 168 g~-~l~~~~~ 176 (184)
|+ .|.|...
T Consensus 88 g~~~l~V~~a 97 (105)
T 2nlw_A 88 KQHTFRVNLF 97 (105)
T ss_dssp TTCEEEEECS
T ss_pred CCceEEEEEc
Confidence 98 8887643
No 81
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.3e-19 Score=123.43 Aligned_cols=77 Identities=17% Similarity=0.329 Sum_probs=72.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
..++|||+|||+.+++++|+++|++||+|..+.|+.++ +|.++|||||+|.+.++|++| ++.|||..+.++.|.|..
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA--MRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHH--HHHSSSBSCSSSCBEEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHH--HHHhCCCeeCCcEEEEEe
Confidence 45799999999999999999999999999999999997 899999999999999999999 999999999999888763
No 82
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=5.9e-19 Score=128.76 Aligned_cols=78 Identities=14% Similarity=0.076 Sum_probs=72.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeE--EEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCC----ee
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKR--YAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPE----EV 166 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~--v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~----~~ 166 (184)
...+.++|||+|||+++|+++|+++|++||.|.. |.|+.|+ +|+++|||||+|.+. +|.+| |..|||. .+
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~A--i~~l~g~~~~~~~ 95 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQL--LQILQALHPPLTI 95 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHH--HHHHTTCCCSCCG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHH--HHHhcCCCCCccC
Confidence 3356789999999999999999999999999977 9999999 999999999999999 99999 9999999 99
Q ss_pred cCeEEeeC
Q 029987 167 MHLQLLSD 174 (184)
Q Consensus 167 ~g~~l~~~ 174 (184)
.++.|.|.
T Consensus 96 ~gr~l~V~ 103 (131)
T 2m2b_A 96 DGKTINVE 103 (131)
T ss_dssp GGCCCCCE
T ss_pred CCEEEEEE
Confidence 99998875
No 83
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.8e-18 Score=119.45 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=67.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecC-----eE
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMH-----LQ 170 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g-----~~ 170 (184)
...++|||+|||+++++++|+++|++||+|..|.|+.+ |||||+|.+.++|++| |+.|||..|.+ +.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~A--i~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYA--VRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHH--HHHSSSEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHH--HHHHCcCCccCCcCcceE
Confidence 35789999999999999999999999999999999855 8999999999999999 99999999999 88
Q ss_pred EeeCCC
Q 029987 171 LLSDTI 176 (184)
Q Consensus 171 l~~~~~ 176 (184)
|.|...
T Consensus 85 i~V~~a 90 (108)
T 1x4c_A 85 IRVKVD 90 (108)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 887643
No 84
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.5e-18 Score=120.38 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 93 ~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
......++|||+|||+++++++|+++|++||+|..|.|..++. .++|||||+|.+.++|++| ++.|||..+.|+.|.
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~A--i~~l~g~~~~g~~l~ 100 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRA--REKLHGTVVEGRKIE 100 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHH--HHHHTTCEETTEECE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHH--HHHcCCCEECCEEEE
Confidence 3445678999999999999999999999999999999998864 4899999999999999999 999999999999998
Q ss_pred eCCC
Q 029987 173 SDTI 176 (184)
Q Consensus 173 ~~~~ 176 (184)
|...
T Consensus 101 V~~a 104 (109)
T 2err_A 101 VNNA 104 (109)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8643
No 85
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.9e-18 Score=118.41 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=70.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
.+.++|||+|||+++++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++| |+.||+..+.++.|.|..
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN--RRGGPPFAFVEFEDPRDAEDA--VYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC--SSSSSCCEEEEESCHHHHHHH--HHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--CCCCCcEEEEEECCHHHHHHH--HHHcCCCEECCeEEEEEE
Confidence 4578999999999999999999999999999998854 456789999999999999999 999999999999998864
Q ss_pred C
Q 029987 176 I 176 (184)
Q Consensus 176 ~ 176 (184)
.
T Consensus 96 a 96 (109)
T 1x4a_A 96 P 96 (109)
T ss_dssp C
T ss_pred c
Confidence 3
No 86
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1e-18 Score=115.05 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=68.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 100 ~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
+|||+|||+++++++|+++|++||+|..+.++.++ +++++|||||+|.+.++|++| ++ +|+..+.++.|.|.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a--~~-~~~~~~~g~~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV--CE-IHFHEINNKMVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHH--HS-SSCCCSSSCCCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHH--HH-CCCCEECCEEEEEE
Confidence 58999999999999999999999999999999998 899999999999999999999 76 99999999998775
No 87
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.2e-18 Score=117.09 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=71.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
...+.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| |+ ++..+.++.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A--~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV--MS--QRHMIDGRWCD 86 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHH--HH--SCEEETTEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHH--HH--cCCeeCCeEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999 87 47789999988
Q ss_pred eCCC
Q 029987 173 SDTI 176 (184)
Q Consensus 173 ~~~~ 176 (184)
|.-.
T Consensus 87 v~~a 90 (103)
T 2cqg_A 87 CKLP 90 (103)
T ss_dssp EECC
T ss_pred EEec
Confidence 7643
No 88
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1e-18 Score=115.42 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=69.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 99 ~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
++|||+|||+++++++|+++|++||+|..+.+..++ +++++|||||+|.+.++|++| ++.++ ..+.|+.|.|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a--~~~~~-~~~~g~~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV--LAQSR-HELDSKTIDPK 74 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHH--HHTTT-CCCSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHH--HHhCC-CccCCEEEEEE
Confidence 579999999999999999999999999999999988 899999999999999999999 99999 99999988765
No 89
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=2.1e-18 Score=125.61 Aligned_cols=78 Identities=18% Similarity=0.142 Sum_probs=69.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCee--EEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEE
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELK--RYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQL 171 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~--~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l 171 (184)
.....++|||+|||+++|+++|+++|++| .|. .|.|+.|+.|+++|||||+|.+.++|++| |+. ++..|.++.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~A--l~~-~~~~l~gR~I 113 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKA--LGK-HKERIGHRYI 113 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHH--HTT-TTCCBTTBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHH--HHH-CCCEECCEEE
Confidence 44567899999999999999999999999 577 89999999999999999999999999999 875 7799999988
Q ss_pred eeCC
Q 029987 172 LSDT 175 (184)
Q Consensus 172 ~~~~ 175 (184)
.|..
T Consensus 114 ~V~~ 117 (126)
T 2hgm_A 114 EVFK 117 (126)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 7754
No 90
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.7e-18 Score=120.24 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=68.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeE
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQ 170 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~ 170 (184)
...++|||+|||+++++++|+++|++||+|..|.|+.++++.++|||||+|.+.++|++| |+.|||..+.+..
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A--~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAV--IGHFNGKFIKTPP 95 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHH--HHHHBTCCCCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHH--HHHhCCCEEcCCc
Confidence 456899999999999999999999999999999999999999999999999999999999 9999999995544
No 91
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=2.5e-18 Score=137.00 Aligned_cols=77 Identities=14% Similarity=0.177 Sum_probs=72.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccC--CeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIG--ELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G--~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
..++|||+|||+++|+++|+++|++|| +|..|.|+.|+ +++++|||||+|.+.++|++| |+.||+..|.++.|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~A--i~~lng~~~~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKL--MDLLPKRELHGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHH--HTTSTTSCBTTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHH--HHHcCCCeECCEEeEE
Confidence 567999999999999999999999999 99999999998 999999999999999999999 9999999999999888
Q ss_pred CC
Q 029987 174 DT 175 (184)
Q Consensus 174 ~~ 175 (184)
..
T Consensus 145 ~~ 146 (229)
T 3q2s_C 145 TP 146 (229)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 92
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=5.2e-18 Score=122.14 Aligned_cols=76 Identities=22% Similarity=0.221 Sum_probs=71.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCCC
Q 029987 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDTI 176 (184)
Q Consensus 98 ~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~~ 176 (184)
.++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| | .|||..+.++.|.|...
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A--~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAA--V-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHH--H-TTTTCEETTEECEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHH--H-hcCCCeECCeEEEEEEC
Confidence 5799999999999999999999999999999999997 899999999999999999999 9 89999999999988643
No 93
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.7e-18 Score=117.41 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=69.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
...+.++|||+|||+++++++|+++|++||.| .++.+.+++++|||||+|.+.++|++| |+.||+..+.++.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEA--LNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHH--HHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHH--HHHhCCCEeCCeEEEE
Confidence 34467899999999999999999999999977 566667899999999999999999999 9999999999999988
Q ss_pred CC
Q 029987 174 DT 175 (184)
Q Consensus 174 ~~ 175 (184)
.-
T Consensus 86 ~~ 87 (101)
T 2fc9_A 86 EL 87 (101)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 94
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=8.1e-18 Score=117.73 Aligned_cols=75 Identities=11% Similarity=0.137 Sum_probs=67.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCe--ecCeEE
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEE--VMHLQL 171 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~--~~g~~l 171 (184)
..+++.+|||+|||+++|+++|+++|++||+|..|.|+ +.+|||||+|++.++|.+| ++.|++.. +.|++|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-----~~kg~AFVef~~~~~A~~A--v~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-----PKKRQALVEFEDVLGACNA--VNYAADNQIYIAGHPA 89 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-----TTTTEEEEEESSHHHHHHH--HHHHHHSCEEETTEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-----cCCCEEEEEECCHHHHHHH--HHHhcCCCceeCCcEE
Confidence 44578899999999999999999999999999999987 3578999999999999999 99999876 679998
Q ss_pred eeCC
Q 029987 172 LSDT 175 (184)
Q Consensus 172 ~~~~ 175 (184)
.|+-
T Consensus 90 ~V~~ 93 (100)
T 3r27_A 90 FVNY 93 (100)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8763
No 95
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.74 E-value=6.1e-18 Score=126.53 Aligned_cols=80 Identities=18% Similarity=0.081 Sum_probs=74.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
.....++|||+|||+++++++|+++|++||+|..|.|+.|+ +|.++|||||+|.+.++|++| |+.|||..+.++.|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA--MDAMDGAVLDGRELR 143 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHH--HHHSTTEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHH--HHHhCCCEECCeEEE
Confidence 34567899999999999999999999999999999999997 899999999999999999999 999999999999998
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|..
T Consensus 144 v~~ 146 (158)
T 2kn4_A 144 VQM 146 (158)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 96
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=4.4e-18 Score=121.31 Aligned_cols=79 Identities=14% Similarity=0.013 Sum_probs=70.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G-~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
.....++|||+|||+++++++|+++|++|| +|..+.|.. ..++|||||+|.+.++|++| |+.|||..+.|+.|.
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~---~~~rGfaFV~F~~~e~A~~A--i~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT---RDFDGTGALEFPSEEILVEA--LERLNNIEFRGSVIT 98 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS---CSSSCCEEEEESSHHHHHHH--HHHTTTEEETTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc---CCCCCEEEEEECCHHHHHHH--HHHcCCCEECCeEEE
Confidence 344678999999999999999999999999 899988853 34789999999999999999 999999999999998
Q ss_pred eCCCc
Q 029987 173 SDTIM 177 (184)
Q Consensus 173 ~~~~~ 177 (184)
|....
T Consensus 99 V~~a~ 103 (111)
T 2jvr_A 99 VERDD 103 (111)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 87543
No 97
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=124.43 Aligned_cols=77 Identities=13% Similarity=0.039 Sum_probs=70.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCe----eEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEE
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGEL----KRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQL 171 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v----~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l 171 (184)
...++|||+|||+++|+++|+++|++||+| ..|.|+.+++|+++|||||+|.+.++|++| |+. |+..+.++.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~A--l~~-~~~~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA--LRK-HKDLLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHH--HTT-TTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHH--HHh-CCCeeCCeEE
Confidence 357899999999999999999999999976 689999999999999999999999999999 876 9999999988
Q ss_pred eeCC
Q 029987 172 LSDT 175 (184)
Q Consensus 172 ~~~~ 175 (184)
.|..
T Consensus 98 ~V~~ 101 (123)
T 2dha_A 98 ELFR 101 (123)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 7754
No 98
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.1e-18 Score=120.52 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=72.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
..++|||+|||+++++++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| |+. ++..|.++.|.|..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A--i~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA--MAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHH--HTS-CSEEETTEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHH--HHh-CCcEECCEEEEEEE
Confidence 45799999999999999999999999999999999997 899999999999999999999 888 99999999998875
Q ss_pred C
Q 029987 176 I 176 (184)
Q Consensus 176 ~ 176 (184)
.
T Consensus 103 a 103 (116)
T 1x4b_A 103 A 103 (116)
T ss_dssp C
T ss_pred C
Confidence 4
No 99
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=6.3e-18 Score=119.68 Aligned_cols=80 Identities=19% Similarity=0.191 Sum_probs=69.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
.....++|||+|||+++++++|+++|+.||+|..|.|+.++ +|.++|||||+|.+.++|++| |+.+ +..+.|+.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~A--i~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV--LAQS-RHELDSKTID 97 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHH--HHSS-CEEETTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHH--HHHC-CCcCCCEEEE
Confidence 34467899999999999999999999999999999999998 799999999999999999999 8876 4999999988
Q ss_pred eCCC
Q 029987 173 SDTI 176 (184)
Q Consensus 173 ~~~~ 176 (184)
|...
T Consensus 98 V~~a 101 (109)
T 2rs2_A 98 PKVA 101 (109)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7643
No 100
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=121.47 Aligned_cols=79 Identities=9% Similarity=0.003 Sum_probs=72.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCC---eeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeE
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGE---LKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQ 170 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~---v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~ 170 (184)
.....++|||+|||+++|+++|+++|+.||. |..|.|+.++.|+++|||||+|.+.++|++| |+ +|+..+.++.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~A--l~-~~~~~~~gr~ 83 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKA--LE-KHRMYMGQRY 83 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHH--HT-TTTCCSSSSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHH--HH-hCcceeCCeE
Confidence 3456789999999999999999999999998 8999999999999999999999999999999 88 9999999998
Q ss_pred EeeCC
Q 029987 171 LLSDT 175 (184)
Q Consensus 171 l~~~~ 175 (184)
|.|..
T Consensus 84 i~V~~ 88 (107)
T 2lmi_A 84 VEVYE 88 (107)
T ss_dssp CCCEE
T ss_pred EEEEE
Confidence 87754
No 101
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.9e-18 Score=119.70 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=71.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHH---HHhhccCCeeEEEEeeCC-CC---CCceEEEEEeCChHHHHHHHHHHHhCCCeecC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIR---ELFSEIGELKRYAIHFDK-NG---RPSVSSVACFATFSPLFLWVQLKWYMPEEVMH 168 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~---~~F~~~G~v~~v~i~~d~-~g---~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g 168 (184)
...++|||+|||+++++++|+ ++|++||+|..|.|+.++ ++ .++|||||+|.+.++|++| |+.|||..+.+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~A--i~~lng~~~~g 90 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRA--IQCVNNVVVDG 90 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHH--HHHHTTEEETT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHH--HHHhCCCEECC
Confidence 456799999999999999999 999999999999998877 33 5669999999999999999 99999999999
Q ss_pred eEEeeCCC
Q 029987 169 LQLLSDTI 176 (184)
Q Consensus 169 ~~l~~~~~ 176 (184)
+.|.|...
T Consensus 91 r~l~V~~a 98 (111)
T 2cpi_A 91 RTLKASLG 98 (111)
T ss_dssp EEEEEESC
T ss_pred EEEEEEec
Confidence 99988743
No 102
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.1e-18 Score=119.07 Aligned_cols=77 Identities=9% Similarity=0.084 Sum_probs=70.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCC-eeEEEEe-eCC-CCCCceEEEEEeCChHHHHHHHHHHHhC--CCeecCeE
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGE-LKRYAIH-FDK-NGRPSVSSVACFATFSPLFLWVQLKWYM--PEEVMHLQ 170 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~-v~~v~i~-~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~--g~~~~g~~ 170 (184)
.+.++|||+|||+++++++|+++|++||+ |..|.|+ .++ ++.++|||||+|.+.++|++| ++.|+ +..+.++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A--~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA--RRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHH--HTTTTTCCSCBTTBC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHH--HHHhhCCCceecCCe
Confidence 35789999999999999999999999998 9999987 666 789999999999999999999 99996 58999998
Q ss_pred EeeC
Q 029987 171 LLSD 174 (184)
Q Consensus 171 l~~~ 174 (184)
|.|.
T Consensus 84 l~V~ 87 (109)
T 2dis_A 84 IAVD 87 (109)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8775
No 103
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=120.46 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=69.2
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC--CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeE
Q 029987 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK--NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQ 170 (184)
Q Consensus 93 ~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~--~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~ 170 (184)
......++|||+|||+++++++|+++|+.|| |..|.|+.++ +|+++|||||+|.+.++|++| | .|||..+.++.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A--i-~l~g~~~~g~~ 89 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA--L-SLNEESLGNRR 89 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHH--H-HTTTCCBTTBC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHH--H-hcCCCEECCeE
Confidence 3445678999999999999999999999999 9999999887 899999999999999999999 9 99999999998
Q ss_pred EeeCC
Q 029987 171 LLSDT 175 (184)
Q Consensus 171 l~~~~ 175 (184)
|.|..
T Consensus 90 l~V~~ 94 (100)
T 2j76_E 90 IRVDV 94 (100)
T ss_dssp CCCEE
T ss_pred EEEEe
Confidence 87653
No 104
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=1.4e-17 Score=130.59 Aligned_cols=79 Identities=20% Similarity=0.089 Sum_probs=72.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
..+.++|||+|||+++|+++|+++|++||+|.+|.|+.|+ +++++|||||+|.+.++|++| |+.+|+..+.++.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~A--i~~~~~~~~~g~~i~~ 89 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA--LDTMNFDVIKGKPVRI 89 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH--HHHHTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHH--HHHhhhhhcCCccccc
Confidence 3467899999999999999999999999999999999998 899999999999999999999 9999999999998876
Q ss_pred CC
Q 029987 174 DT 175 (184)
Q Consensus 174 ~~ 175 (184)
..
T Consensus 90 ~~ 91 (213)
T 4f02_A 90 MW 91 (213)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 105
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=1.4e-18 Score=118.39 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=70.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCCC
Q 029987 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDTI 176 (184)
Q Consensus 99 ~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~~ 176 (184)
++|||+|||+++++++|+++|++||+|..+.+..++ ++.++|||||+|.+.+ |++| +..|||..+.|+.|.|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a--~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEA--IAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHH--HHTSCSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHH--HHHhCCCEECCeEEEEEEc
Confidence 589999999999999999999999999999999988 7999999999999999 9999 9999999999998877643
No 106
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=8.5e-18 Score=122.55 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=69.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHH----HHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecC
Q 029987 93 SGIEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMH 168 (184)
Q Consensus 93 ~~~~~~~~l~V~nL~~~vt~~~l~----~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g 168 (184)
...++.++|||+|||+.+++++|+ ++|++||+|..|.+. .+++++|||||+|.+.++|..| |+.|||..+.|
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~A--i~~lng~~l~g 99 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAF--VEAFQGYPFQG 99 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHH--HHHSTTCCCTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHH--HHHHCCCEeCC
Confidence 445668899999999999999876 799999999888764 4788999999999999999999 99999999999
Q ss_pred eEEeeC
Q 029987 169 LQLLSD 174 (184)
Q Consensus 169 ~~l~~~ 174 (184)
++|.|.
T Consensus 100 r~l~V~ 105 (127)
T 2a3j_A 100 NPLVIT 105 (127)
T ss_dssp SCCEEE
T ss_pred CEEEEE
Confidence 988876
No 107
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=6e-18 Score=117.83 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=69.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
...++|||+|||+++++++|+++|++||.|..|.|+.+++|.++|||||+|.+.++|++| ++ ++..+.|+.|.|..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A--i~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKI--VE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHH--TT--CCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHH--Hh--CCCeECCEEEEEEE
Confidence 356799999999999999999999999999999999999999999999999999999999 87 77788777776543
No 108
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=2e-18 Score=126.83 Aligned_cols=78 Identities=18% Similarity=0.070 Sum_probs=73.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
...++|||+|||+++|+++|+++|++||+|..|.|+.++ +++++|||||+|.+.++|++| |+.|||..+.++.|.|.
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~A--i~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA--MDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHH--HTTTTTCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHH--HHHcCCCEECCEEEEEE
Confidence 357899999999999999999999999999999999888 899999999999999999999 99999999999988876
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
-
T Consensus 123 ~ 123 (135)
T 2lea_A 123 M 123 (135)
T ss_dssp E
T ss_pred E
Confidence 3
No 109
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=112.85 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=68.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
...+.++|||+|||+++++++|+++|++||+|..|.|. +|||||+|.+.++|++| ++.||+..+.++.|.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~v 74 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDA--IRNLHHYKLHGVNINV 74 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHH--HHHHTTCBCSSCBCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHH--HHHhcCCccCCcEEEE
Confidence 34567899999999999999999999999999999987 68999999999999999 9999999999999888
Q ss_pred CCC
Q 029987 174 DTI 176 (184)
Q Consensus 174 ~~~ 176 (184)
...
T Consensus 75 ~~a 77 (90)
T 2dnq_A 75 EAS 77 (90)
T ss_dssp ECS
T ss_pred EEC
Confidence 654
No 110
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=7.5e-18 Score=118.39 Aligned_cols=73 Identities=11% Similarity=0.048 Sum_probs=65.6
Q ss_pred CCCcEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCC--eecCeEEe
Q 029987 96 EVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPE--EVMHLQLL 172 (184)
Q Consensus 96 ~~~~~l~V~nL~~-~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~--~~~g~~l~ 172 (184)
.+.++|||+|||+ ++|+++|+++|++||.|..|.|+.+ +|||||+|++.++|++| |+.||+. .+.|++|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~A--i~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAA--VDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHH--HHHHHHSCCEETTEECE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHH--HHHHcCCCceECCcEEE
Confidence 4678999999999 9999999999999999999999843 58999999999999999 9998864 58999988
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|.-
T Consensus 86 V~~ 88 (102)
T 1x4d_A 86 VHL 88 (102)
T ss_dssp EEE
T ss_pred EEE
Confidence 853
No 111
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.5e-17 Score=120.91 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=68.2
Q ss_pred cEEEEeCC----CCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCC----hHH----HHHHHHHH--HhCC
Q 029987 99 TKLYVSNL----HPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFAT----FSP----LFLWVQLK--WYMP 163 (184)
Q Consensus 99 ~~l~V~nL----~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~----~~~----a~~A~~i~--~l~g 163 (184)
++|||+|| |+.+++++|+++|++||+|.+|.++.|+ ||.++|||||+|.+ +++ |.+| +. .+||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kA--i~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSA--VRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHH--HHHTTTTC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHH--HHHhhhcC
Confidence 78999999 9999999999999999999999999999 99999999999996 434 7888 88 7899
Q ss_pred CeecCeEEeeCC
Q 029987 164 EEVMHLQLLSDT 175 (184)
Q Consensus 164 ~~~~g~~l~~~~ 175 (184)
..|.|+.|.|.-
T Consensus 81 ~~I~Gr~irV~l 92 (136)
T 2j8a_A 81 CFIMGFKFEVIL 92 (136)
T ss_dssp EEETTEEEEEEE
T ss_pred CeecCcEEEEEE
Confidence 999999998863
No 112
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.9e-17 Score=111.74 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=67.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
.....++|||+|||+++++++|+++|++||+|..|.+. ++||||+|.+.++|++| ++.|||..+.++.|.|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEA--IRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHH--HHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHH--HHHhCCCeeCCcEEEE
Confidence 34567899999999999999999999999999999987 45999999999999999 9999999999999988
Q ss_pred CCC
Q 029987 174 DTI 176 (184)
Q Consensus 174 ~~~ 176 (184)
...
T Consensus 77 ~~a 79 (92)
T 2dgt_A 77 QLS 79 (92)
T ss_dssp EES
T ss_pred EEc
Confidence 643
No 113
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.2e-17 Score=110.27 Aligned_cols=74 Identities=22% Similarity=0.160 Sum_probs=67.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHh-CCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWY-MPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l-~g~~~~g~~l~ 172 (184)
...+.++|||+|||+++++++|+++|++||+|..+.+.. ++|||||+|.+.++|++| ++.| ++..+.++.|.
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a--~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVA--AEKSFNKLIVNGRRLN 80 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHH--HHTTTTTCEETTEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHH--HHHhcCCeeECCCEEE
Confidence 345678999999999999999999999999999999984 478999999999999999 9999 99999999987
Q ss_pred eC
Q 029987 173 SD 174 (184)
Q Consensus 173 ~~ 174 (184)
|.
T Consensus 81 v~ 82 (85)
T 2ytc_A 81 VK 82 (85)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 114
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=2.8e-17 Score=114.77 Aligned_cols=75 Identities=19% Similarity=0.149 Sum_probs=68.3
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 93 ~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
....+.++|||+|||+++|+++|+++|++||+|..|.|+ ++||||+|.+.++|++| |+.||+..+.++.|.
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKA--MEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHH--HHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHH--HHHHCCCccCCCEEE
Confidence 344567899999999999999999999999999999886 56999999999999999 999999999999998
Q ss_pred eCCC
Q 029987 173 SDTI 176 (184)
Q Consensus 173 ~~~~ 176 (184)
|.-.
T Consensus 77 v~~a 80 (103)
T 2dgu_A 77 IVFA 80 (103)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8643
No 115
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.1e-17 Score=114.98 Aligned_cols=75 Identities=12% Similarity=0.106 Sum_probs=66.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHh--CCCeecCeEEee
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWY--MPEEVMHLQLLS 173 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l--~g~~~~g~~l~~ 173 (184)
++.++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|++.++|++| ++.| ++..+.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~A--i~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITM--VNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHH--HHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHH--HHHhccCCceECCcEEEE
Confidence 46789999999999999999999999999999988743 78999999999999999 8876 567899999988
Q ss_pred CCCc
Q 029987 174 DTIM 177 (184)
Q Consensus 174 ~~~~ 177 (184)
.-..
T Consensus 86 ~~a~ 89 (101)
T 2cq1_A 86 QYSN 89 (101)
T ss_dssp EECS
T ss_pred EEcC
Confidence 6443
No 116
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=4.2e-18 Score=112.04 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=66.8
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 100 ~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
+|||+|||+++++++|+++|++||+|..+.++.++ ++.++|||||+|.+.++|++| ++. ++..+.|+.|.+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A--i~~-~~~~~~g~~l~v~ 73 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI--MEK-KYHNVGLSKCEIK 73 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHH--HTT-SSCCBTTBCCCEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHH--HHh-CCCeECCEEEEEE
Confidence 58999999999999999999999999999999887 799999999999999999999 775 8899999887664
No 117
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=2.3e-18 Score=127.41 Aligned_cols=75 Identities=20% Similarity=0.157 Sum_probs=69.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
..++|||+|||+++|+++|+++|++|| |..|.|+.|++|+++|||||+|.+.++|++| | ++|+..|.++.|.|..
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~A--l-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAA--M-SKDRANMQHRYIELFL 119 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHH--T-TCCSCSSSSCCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHH--H-hhCCCEECCEEEEEEE
Confidence 467999999999999999999999999 7799999999999999999999999999999 8 8899999999877753
No 118
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=113.78 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=68.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
...+.++|||+|||+++++++|+++|++||+|..|.|.. ++|||||+|.+.++|++| ++.|||..+.++.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-----~kg~afV~f~~~~~a~~a--~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----DKGFGFIRLETRTLAEIA--KVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-----TTTEEEEECSSSHHHHHH--HHHHTTCCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-----CCCEEEEEECCHHHHHHH--HHHhCCCEeCCceEEE
Confidence 345678999999999999999999999999999999873 478999999999999999 9999999999998887
Q ss_pred CC
Q 029987 174 DT 175 (184)
Q Consensus 174 ~~ 175 (184)
..
T Consensus 84 ~~ 85 (99)
T 2cpj_A 84 RF 85 (99)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 119
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.2e-18 Score=120.53 Aligned_cols=80 Identities=25% Similarity=0.260 Sum_probs=68.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
...+.++|||+|||+++|+++|+++|++||.|..+.+..+. +++++|||||+|.+.++|++| |+.|||..+.++.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~A--i~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQA--LHLVNGYKLYGKILV 98 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHH--HHHSTTCBCSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHH--HHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999998443222222 788999999999999999999 999999999999888
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|.-
T Consensus 99 v~~ 101 (115)
T 2cpx_A 99 IEF 101 (115)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 120
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=113.82 Aligned_cols=77 Identities=17% Similarity=0.103 Sum_probs=69.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
...+.++|||+|||+++++++|+++|+.|+ .|.++.++ ++.++|||||+|.+.++|++| |+.|||..|.++.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAA--KEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHH--HHHHTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHH--HHHhCCCeECCeEEE
Confidence 344678999999999999999999999774 67777887 899999999999999999999 999999999999988
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|.-
T Consensus 86 V~~ 88 (102)
T 2fc8_A 86 LDW 88 (102)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 121
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.3e-17 Score=111.07 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=67.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
..+.++|||+|||+++++++|+++|++||+|..|.|+ ++||||+|.+.++|++| |+.|||..+.++.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAA--IAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHH--HHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHH--HHHhCCCEECCcEEEEE
Confidence 3467899999999999999999999999999999987 45999999999999999 99999999999998886
Q ss_pred CC
Q 029987 175 TI 176 (184)
Q Consensus 175 ~~ 176 (184)
..
T Consensus 77 ~a 78 (90)
T 2dnp_A 77 LS 78 (90)
T ss_dssp ES
T ss_pred EC
Confidence 43
No 122
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.3e-17 Score=113.26 Aligned_cols=74 Identities=14% Similarity=0.056 Sum_probs=68.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
....++|||+|||+++++++|+++|++||.|..+.+. +++|||||+|.+.++|++| +..|||..+.++.|.|.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~A--i~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVC--IVALANFPFQGRNLRTG 96 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHH--HHHHTTCEETTEECCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHH--HHHhCCCeECCeEEEEE
Confidence 3457899999999999999999999999999999987 4689999999999999999 99999999999998876
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
-
T Consensus 97 ~ 97 (101)
T 2la4_A 97 W 97 (101)
T ss_dssp B
T ss_pred e
Confidence 4
No 123
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=113.16 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=66.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeec--CeEEee
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVM--HLQLLS 173 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~--g~~l~~ 173 (184)
.+.++|||+|||+++++++|+++|++||+|..|.+..+ +|||||+|.+.++|++| ++.|||..+. ++.|.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A--~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAA--CAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHH--HHHHTTCBCSSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHH--HHHHCCCEeCCCCcEEEE
Confidence 35689999999999999999999999999999988743 68999999999999999 9999999999 888877
Q ss_pred CC
Q 029987 174 DT 175 (184)
Q Consensus 174 ~~ 175 (184)
.-
T Consensus 88 ~~ 89 (97)
T 1why_A 88 DF 89 (97)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 124
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=9e-18 Score=115.71 Aligned_cols=78 Identities=13% Similarity=0.203 Sum_probs=69.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHH----HHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHL 169 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~----~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~ 169 (184)
..++.++|||+|||+++++++|+ ++|++||+|..|.+. +++.++|||||+|.+.++|++| ++.|||..+.++
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~--~~~~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~ 79 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS--RSLKMRGQAFVIFKEVSSATNA--LRSMQGFPFYDK 79 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC--HHHHHTTCEEEEESSHHHHHHH--HHHHTTCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE--cCCCcCcEEEEEeCCHHHHHHH--HHHhCCCEECCc
Confidence 34568899999999999999999 999999999998876 3567789999999999999999 999999999999
Q ss_pred EEeeCC
Q 029987 170 QLLSDT 175 (184)
Q Consensus 170 ~l~~~~ 175 (184)
.|.|.-
T Consensus 80 ~l~v~~ 85 (97)
T 1nu4_A 80 PMRIQY 85 (97)
T ss_dssp ECEEEE
T ss_pred EEEEEE
Confidence 988763
No 125
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=115.82 Aligned_cols=74 Identities=12% Similarity=0.098 Sum_probs=65.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCC--eecCeEEe
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPE--EVMHLQLL 172 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~--~~~g~~l~ 172 (184)
.++.++|||+|||+++++++|+++|++||+|..|.|+. .+|||||+|++.++|.+| ++.|++. .+.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~A--i~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-----FKRQALVEFENIDSAKEC--VTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHH--HHHHHHSCCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-----CCCEEEEEECCHHHHHHH--HHHhccCCceECCEEEE
Confidence 34678999999999999999999999999999998874 378999999999999999 9988664 58888887
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|+-
T Consensus 85 V~~ 87 (104)
T 1wex_A 85 FNY 87 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 753
No 126
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.4e-17 Score=118.86 Aligned_cols=76 Identities=9% Similarity=0.025 Sum_probs=67.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhC--CCeecCeEE
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYM--PEEVMHLQL 171 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~--g~~~~g~~l 171 (184)
..++.++|||+|||+++++++|+++|++||.|..|.|+.+ +|||||+|++.++|++| |+.|+ +..+.|++|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~A--i~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTM--VNYYTSVTPVLRGQPI 99 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHH--HHHHHHHCCCBTTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHH--HHHhccCCceECCeEE
Confidence 3456789999999999999999999999999999999854 78999999999999999 99887 468899988
Q ss_pred eeCCC
Q 029987 172 LSDTI 176 (184)
Q Consensus 172 ~~~~~ 176 (184)
.|+-.
T Consensus 100 ~V~~a 104 (119)
T 2ad9_A 100 YIQFS 104 (119)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 87643
No 127
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=4.3e-17 Score=115.82 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=70.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
.++.++|||+|||+++++++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|.+| +..|||..+.++.|.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNA--VDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHH--HHHHTTCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHH--HHHcCCCEECCeEEEEE
Confidence 346789999999999999999999999999999999865 45689999999999999999 99999999999988876
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
.
T Consensus 81 ~ 81 (115)
T 3lqv_A 81 Y 81 (115)
T ss_dssp E
T ss_pred E
Confidence 4
No 128
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=113.55 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=66.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
.+..++|||+|||+++++++|+++|++||.|. +.++. +.++|||||+|.+.++|++| |+.|||..+.++.|.|.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~---~~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW---QGPRRRAFLHYPDSAAAQQA--VSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE---ETTTTEEEEECSSHHHHHHH--HHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc---CCCCcEEEEEECCHHHHHHH--HHHhCCCEECCcEEEEE
Confidence 34578999999999999999999999999996 66664 36789999999999999999 99999999999988876
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
.
T Consensus 90 ~ 90 (97)
T 2e5j_A 90 L 90 (97)
T ss_dssp E
T ss_pred E
Confidence 4
No 129
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6e-17 Score=114.22 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=68.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
....++|||+|||+++++++|+++|++||+|..|.|+.+ +|||||+|.+.++|++| |..|||..+.++.|.|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHA--IVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHH--HHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHH--HHHcCCCEECCcEEEEE
Confidence 346789999999999999999999999999999999854 78999999999999999 99999999999998886
Q ss_pred CC
Q 029987 175 TI 176 (184)
Q Consensus 175 ~~ 176 (184)
-.
T Consensus 95 ~a 96 (109)
T 1x4g_A 95 WG 96 (109)
T ss_dssp CC
T ss_pred ec
Confidence 43
No 130
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=8.4e-17 Score=119.76 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=72.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 98 ~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
.++|||+|||+++++++|+++|+.||+|..+.++.++ +|.++|||||+|.+.++|++| ++.|+|..+.++.|.+..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a--~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA--INTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH--HHHHTTCEETTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHH--HHHcCCCccCCceEEEEe
Confidence 5799999999999999999999999999999999998 999999999999999999999 999999999999988753
No 131
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=1e-16 Score=111.11 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=67.0
Q ss_pred CCCCCCcEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEE
Q 029987 93 SGIEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQL 171 (184)
Q Consensus 93 ~~~~~~~~l~V~nL~~-~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l 171 (184)
...++.++|||+|||+ ++++++|+++|++||.|..+.|. +|||||+|.+.++|++| ++.|||..+.|+.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A--i~~l~g~~~~g~~l 87 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDA--IEXESQEMNFGKKL 87 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHH--HHHHTTSEETTEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHH--HHHcCCCEECCEEE
Confidence 4455788999999998 99999999999999999999884 78999999999999999 99999999999998
Q ss_pred eeCC
Q 029987 172 LSDT 175 (184)
Q Consensus 172 ~~~~ 175 (184)
.|.-
T Consensus 88 ~V~~ 91 (97)
T 2xnq_A 88 ILEV 91 (97)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8764
No 132
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-18 Score=118.81 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=69.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
...++|||+|||+++++++|+++|++||.|.. .++.++ +++++|||||+|.+.++|++| |+ |||..+.++.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A--~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKA--LE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHH--HH-GGGCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHH--Hh-cCCcEECCcEEEEE
Confidence 45779999999999999999999999999887 555555 789999999999999999999 98 99999999998886
Q ss_pred CC
Q 029987 175 TI 176 (184)
Q Consensus 175 ~~ 176 (184)
..
T Consensus 91 ~a 92 (101)
T 1fj7_A 91 KP 92 (101)
T ss_dssp CC
T ss_pred Ec
Confidence 43
No 133
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=1.5e-17 Score=118.85 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=61.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEE
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQL 171 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l 171 (184)
..++|||+|||+++++++|+++|++||+|..|.|+.+ |||||+|.+.++|++| |+.|||.+|.++.|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~A--i~~l~g~~~~gr~~ 81 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYA--VRKLDNTKFRSHEG 81 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHH--HHHHTTCBCCCTTS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHH--HHHhCCCEECCcEe
Confidence 4689999999999999999999999999999999754 8999999999999999 99999999999773
No 134
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=5.7e-17 Score=140.28 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=74.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
.+.++|||+|||+.||+++|+++|++||+|..|.|+.++ ++.++|||||+|.+.++|++| |+.|||..|.++.|.|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A--i~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA--YKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHH--HHHcCCCEECCEEEEEE
Confidence 456799999999999999999999999999999999997 999999999999999999999 99999999999999887
Q ss_pred CC
Q 029987 175 TI 176 (184)
Q Consensus 175 ~~ 176 (184)
..
T Consensus 178 ~a 179 (437)
T 3pgw_S 178 VE 179 (437)
T ss_pred Ee
Confidence 43
No 135
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=120.78 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=71.1
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEE------EEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCee
Q 029987 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY------AIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEV 166 (184)
Q Consensus 93 ~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v------~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~ 166 (184)
....+.++|||+|||+++|+++|+++|++||.|..+ .+....++.++|||||+|.+.++|.+| |..|||..+
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~A--i~~lng~~~ 117 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKA--LKEANGYVL 117 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHH--HHHHTTBEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHH--HHHhCCCEe
Confidence 445678899999999999999999999999998764 233335789999999999999999999 999999999
Q ss_pred cCeEEeeCC
Q 029987 167 MHLQLLSDT 175 (184)
Q Consensus 167 ~g~~l~~~~ 175 (184)
.++.|.|..
T Consensus 118 ~g~~l~V~~ 126 (143)
T 3egn_A 118 FGKPMVVQF 126 (143)
T ss_dssp TTEECEEEE
T ss_pred CCcEEEEEE
Confidence 999998864
No 136
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.3e-17 Score=111.62 Aligned_cols=74 Identities=24% Similarity=0.227 Sum_probs=65.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCC-eeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCC-CeecCeEE
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGE-LKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMP-EEVMHLQL 171 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~-v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g-~~~~g~~l 171 (184)
...+.++|||+|||+++++++|+++|++||+ |..+.+. ++|||||+|.+.++|++| ++.||| ..+.++.|
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A--~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRA--IETLSGKVELHGKIM 75 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHH--HHHHTTTCEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHH--HHHccCCeeECCEEE
Confidence 3456789999999999999999999999999 6666553 478999999999999999 999999 99999998
Q ss_pred eeCC
Q 029987 172 LSDT 175 (184)
Q Consensus 172 ~~~~ 175 (184)
.|.-
T Consensus 76 ~v~~ 79 (93)
T 2cqh_A 76 EVDY 79 (93)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8864
No 137
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=114.84 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=66.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 99 ~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
++|||+|||+++|+++|+++|++||+|..|.|..+ ++|||||+|.+.++|++| ++.|||..+.++.|.|..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~V~~ 71 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDA--VRGLDGKVICGSRVRVEL 71 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHH--HHHHHHSCSSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHH--HHHHCCCeECCcEEEEEE
Confidence 58999999999999999999999999999999866 689999999999999999 999999999999888763
No 138
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=116.32 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=66.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
..++|||+|||+++++++|+++|++||+|..|.|. .++|||||+|.+.++|++| |+.|||..+.+++|.|.-
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~A~~A--i~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-----EGGITAIVEFLEPLEARKA--FRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-----SSSSCEEEEESCHHHHHHH--HHHHTTCBSSSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-----CCCCEEEEEeCCHHHHHHH--HHHhCCCEECCeEEEEEE
Confidence 36799999999999999999999999999999886 3578999999999999999 999999999999988753
No 139
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=8.9e-17 Score=113.63 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=68.1
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 93 ~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
......++|||+|||+++++++|+++|++||+|..|.|. +|||||+|.+.++|++| ++.|||..+.++.|.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~A--i~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKA--IEEVHGKSFANQPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHH--HHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHH--HHHcCCCEECCeEEE
Confidence 345678899999999999999999999999999999987 68999999999999999 999999999999998
Q ss_pred eCCC
Q 029987 173 SDTI 176 (184)
Q Consensus 173 ~~~~ 176 (184)
|.-.
T Consensus 97 V~~a 100 (108)
T 2jvo_A 97 VVYS 100 (108)
T ss_dssp EESC
T ss_pred EEEe
Confidence 8643
No 140
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=2.6e-17 Score=113.26 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=67.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
..+.++|||+|||+++++++|+++|++||.|..+ ..++.++|||||+|.+.++|++| ++.|||..+.|+.|.|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKN--LEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHH--HHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHH--HHHhCCCEECCeEEEEE
Confidence 3467899999999999999999999999988766 34788999999999999999999 99999999999999886
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
.
T Consensus 87 ~ 87 (96)
T 1fjc_A 87 Y 87 (96)
T ss_dssp E
T ss_pred E
Confidence 4
No 141
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-18 Score=123.99 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=73.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeE--------EEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCee
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKR--------YAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEV 166 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~--------v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~ 166 (184)
.+.++|||+|||+++++++|+++|++||.|.. |.|+.++ +++++|||||+|.+.++|++| |+.|||..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A--i~~l~g~~~ 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAA--IDWFDGKEF 82 (116)
Confidence 46789999999999999999999999999998 8899887 899999999999999999999 999999999
Q ss_pred cCeEEeeCCC
Q 029987 167 MHLQLLSDTI 176 (184)
Q Consensus 167 ~g~~l~~~~~ 176 (184)
.++.|.|...
T Consensus 83 ~g~~l~V~~a 92 (116)
T 2lcw_A 83 SGNPIKVSFA 92 (116)
Confidence 9999888643
No 142
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=109.46 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=67.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcc--CCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEE
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEI--GELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQL 171 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~--G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l 171 (184)
...+.++|||+|||+++++++|+++|++| |.|..|.+. +|||||+|.+.++|++| |+.|||..+.++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEA--MKALNGKVLDGSPI 81 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHH--HHHHSSEEETTEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHH--HHHhCCCEeCCcEE
Confidence 34467899999999999999999999999 899988775 68999999999999999 99999999999999
Q ss_pred eeCCC
Q 029987 172 LSDTI 176 (184)
Q Consensus 172 ~~~~~ 176 (184)
.|.-.
T Consensus 82 ~v~~a 86 (99)
T 2cpd_A 82 EVTLA 86 (99)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 88643
No 143
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=5.9e-17 Score=115.38 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=58.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-C---CCCceEEEEEeCChHHHHHHHHHHHh
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-N---GRPSVSSVACFATFSPLFLWVQLKWY 161 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~---g~~~G~afV~f~~~~~a~~A~~i~~l 161 (184)
...++|||+|||+++++++|+++|++||+|. +.++.++ + |+++|||||+|.+.++|++| |+.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~A--i~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQAL--IDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHH--HHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHH--HHhh
Confidence 4578999999999999999999999999999 7777776 4 79999999999999999999 9888
No 144
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.69 E-value=1.2e-16 Score=107.85 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=65.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcc----C-------CeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCe
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEI----G-------ELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEE 165 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~----G-------~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~ 165 (184)
+.++|||+|||+++++++|+++|++| | +|..+.+.. ++|||||+|.+.++|++| + .|||..
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-----~kg~afV~f~~~~~a~~A--~-~l~g~~ 76 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQA--M-AFDGII 76 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-----SSSEEEEEESSHHHHHHH--G-GGTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-----CCcEEEEEcCCHHHHHHH--H-hcCCCE
Confidence 56799999999999999999999999 8 899998873 379999999999999999 9 999999
Q ss_pred ecCeEEeeCCC
Q 029987 166 VMHLQLLSDTI 176 (184)
Q Consensus 166 ~~g~~l~~~~~ 176 (184)
+.++.|.|..+
T Consensus 77 ~~g~~l~V~rp 87 (87)
T 2hzc_A 77 FQGQSLKIRRP 87 (87)
T ss_dssp ETTEECEEECC
T ss_pred ECCeEEEEeCC
Confidence 99999988653
No 145
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=5e-17 Score=112.17 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=64.8
Q ss_pred CCCCCcEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~-~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
..++.++|||+|||+ ++++++|+++|++||+|..|.|. +|||||+|.+.++|++| ++.|||..+.++.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDA--IECESQEMNFGKKLI 76 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHH--HHHHTCSSCBTTTBC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHH--HHHcCCCeeCCcEEE
Confidence 345688999999999 99999999999999999999885 78999999999999999 999999999988877
Q ss_pred eC
Q 029987 173 SD 174 (184)
Q Consensus 173 ~~ 174 (184)
|.
T Consensus 77 V~ 78 (96)
T 2kvi_A 77 LE 78 (96)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 146
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=1.1e-16 Score=113.03 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=66.0
Q ss_pred CCCcEEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~-vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
...++|||+|||++ +++++|+++|++||+|..|.| ++|||||+|.+.++|++| |+.|||..+.++.|.|.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAA--VLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHH--HHHHTTCEETTEECCEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHH--HHHcCCCEECCeEEEEE
Confidence 35689999999999 999999999999999999988 378999999999999999 99999999999998886
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
.
T Consensus 96 ~ 96 (110)
T 1wf1_A 96 M 96 (110)
T ss_dssp E
T ss_pred E
Confidence 4
No 147
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-17 Score=118.19 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=65.3
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhC--CCeecCeEE
Q 029987 95 IEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYM--PEEVMHLQL 171 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~-vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~--g~~~~g~~l 171 (184)
..+.++|||+|||++ +++++|+++|++||+|..|.|+ +++|||||+|++.++|++| |+.|+ +..+.|++|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-----~~kg~aFVef~~~~~A~~A--i~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-----RMKSQAFIEMETREDAMAM--VDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHH--HHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-----cCCCEEEEEECCHHHHHHH--HHHhccCCceECCEEE
Confidence 346789999999998 9999999999999999999987 4579999999999999999 99885 456889888
Q ss_pred eeCC
Q 029987 172 LSDT 175 (184)
Q Consensus 172 ~~~~ 175 (184)
.|+-
T Consensus 95 ~V~~ 98 (112)
T 1x4f_A 95 KVDL 98 (112)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7753
No 148
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.4e-16 Score=117.15 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=74.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
...+.++|||+|||+.+++++|+++|++||.|..+.++.++ ++.++|+|||+|.+.++|.+| +..|||..+.++.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA--MDSMQGQDLNGRPLR 160 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHH--HHHHTTCEETTEECE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH--HHHhCCCccCCcEEE
Confidence 44567799999999999999999999999999999999997 899999999999999999999 999999999999988
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|+-
T Consensus 161 v~~ 163 (166)
T 3md3_A 161 INW 163 (166)
T ss_dssp EEE
T ss_pred EEe
Confidence 753
No 149
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=108.37 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=64.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
..++|||+|||+++++++|+++|++||+|..| +.++ ++. ||||+|.+.++|++| |+ |||..+.++.|.|..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~a--i~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAV--LS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHH--HT-CSCCEETTEECCCBC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHH--Hh-cCCeEECCEEEEEEE
Confidence 45799999999999999999999999999987 4555 555 999999999999999 98 999999999998875
Q ss_pred C
Q 029987 176 I 176 (184)
Q Consensus 176 ~ 176 (184)
.
T Consensus 79 a 79 (94)
T 2e5g_A 79 R 79 (94)
T ss_dssp S
T ss_pred C
Confidence 4
No 150
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=1.6e-16 Score=121.61 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEE
Q 029987 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQL 171 (184)
Q Consensus 93 ~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l 171 (184)
......++|||+|||+++|+++|+++|+.||+|..|.|+.++ +|.++|||||+|.+.++|++| |+. ++..+.++.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A--~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--MNA-RPHKVDGRVV 84 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH--HHT-CSCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHH--Hhc-CCCEECCEEe
Confidence 344567899999999999999999999999999999999998 899999999999999999999 866 8999999988
Q ss_pred eeCC
Q 029987 172 LSDT 175 (184)
Q Consensus 172 ~~~~ 175 (184)
.+..
T Consensus 85 ~v~~ 88 (196)
T 1l3k_A 85 EPKR 88 (196)
T ss_dssp EEEE
T ss_pred eeec
Confidence 7754
No 151
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1e-16 Score=119.73 Aligned_cols=76 Identities=21% Similarity=0.162 Sum_probs=72.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
+.++|||+|||+++++++|+++|++||+|..+.++.++ +|.++|||||+|.+.++|++| ++.|+|..+.++.|.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a--~~~l~~~~~~g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA--IKVLNGITVRNKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHH--HHHHTTCEETTEECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHH--HHhcCCCEeCCcEEEEE
Confidence 46899999999999999999999999999999999887 899999999999999999999 99999999999998875
No 152
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=9.6e-17 Score=109.03 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=66.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCCC
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDTI 176 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~~ 176 (184)
..++|||+|||+++++++|+++|++| +|..+.|. +++|||||+|.+.++|++| ++.|||..+.++.|.|...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~A--i~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNA--IQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHH--HHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHH--HHHhCCCeECCcEEEEEEc
Confidence 46799999999999999999999999 99999884 5789999999999999999 9999999999999988643
No 153
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.68 E-value=3e-16 Score=117.76 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=73.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
...++|||+|||+.+++++|+++|++||+|..+.+..++ +|.++|+|||+|.+.++|.+| ++.|||..+.|+.|.|+
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~V~ 169 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA--IAGLNGMQLGDKKLLVQ 169 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHH--HHHHTTCEETTEECEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHH--HHHcCCCEECCeEEEEE
Confidence 347899999999999999999999999999999999997 999999999999999999999 99999999999999886
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
-
T Consensus 170 ~ 170 (172)
T 2g4b_A 170 R 170 (172)
T ss_dssp E
T ss_pred e
Confidence 3
No 154
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=1.3e-16 Score=118.64 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=69.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
...+.++|||+|||+++++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|.+| |..|||..+.+++|.|
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADA--VRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHH--HHHHSSSCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHH--HHHcCCCEECCeEEEE
Confidence 4456789999999999999999999999999999999865 589999999999999999 9999999999998887
Q ss_pred CC
Q 029987 174 DT 175 (184)
Q Consensus 174 ~~ 175 (184)
.-
T Consensus 143 ~~ 144 (150)
T 2i2y_A 143 EL 144 (150)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 155
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.1e-16 Score=117.47 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=70.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 99 ~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
.+|||+|||+++|+++|+++|++||+|..+.+..+++++++|||||+|.+.++|.+| ++.|+|..+.++.|.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A--~~~l~~~~~~g~~i~v~~ 75 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIA--LQTLNGKQIENNIVKINW 75 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHH--HHHHTTCEETTEECEEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHH--HHHcCCCccCCCeeEEEE
Confidence 489999999999999999999999999999999999889999999999999999999 999999999999988753
No 156
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=114.14 Aligned_cols=80 Identities=15% Similarity=0.053 Sum_probs=67.7
Q ss_pred CCCCCcEEEE--eCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCee-----
Q 029987 94 GIEVGTKLYV--SNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEV----- 166 (184)
Q Consensus 94 ~~~~~~~l~V--~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~----- 166 (184)
...+.++||| +||++++++++|+++|++||+|..|.|.. .+|||||+|.+.++|++| ++.|||.++
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~A--i~~lnG~~~~~~lg 93 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRA--YVTLNGKEVVDDLG 93 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHH--HHHTTTCEEECTTS
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHH--HHHhCCCEEccccC
Confidence 3345778999 66999999999999999999999988753 378999999999999999 999999988
Q ss_pred cCeEEeeCCCccee
Q 029987 167 MHLQLLSDTIMYCW 180 (184)
Q Consensus 167 ~g~~l~~~~~~~~~ 180 (184)
.+++|.++-...+.
T Consensus 94 ~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 94 QKITLYLNFVEKVQ 107 (114)
T ss_dssp CEEECEEEEESCCC
T ss_pred CCcEEEEEecccCc
Confidence 67777776554443
No 157
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.8e-16 Score=109.05 Aligned_cols=75 Identities=12% Similarity=0.114 Sum_probs=66.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEE-EEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRY-AIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v-~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
...++|||+|||+++++++|+++|++||+|..| .|+.++. .+.|||+|.+.++|++| |+.|||..+.++.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~A--i~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQA--LDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHH--HHHHTTCBCSSCBCEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHH--HHHhCCCEECCcEEEEE
Confidence 356899999999999999999999999999999 5777662 23499999999999999 99999999999998876
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
.
T Consensus 88 ~ 88 (96)
T 2e44_A 88 Y 88 (96)
T ss_dssp E
T ss_pred E
Confidence 4
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=3.7e-16 Score=121.27 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=73.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
...++|||+|||+++++++|+++|++||.|..|.|..++ +|.++|||||+|.+.++|.+| ++.|||..+.++.|.|.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A--~~~l~g~~~~g~~i~V~ 200 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDA--VSSMNLFDLGGQYLRVG 200 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH--HHHHTTCBCSSSBCEEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHH--HHHccCCEeCCcEEEEE
Confidence 356799999999999999999999999999999999997 899999999999999999999 99999999999998876
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
-
T Consensus 201 ~ 201 (216)
T 2qfj_A 201 K 201 (216)
T ss_dssp E
T ss_pred E
Confidence 4
No 159
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.9e-16 Score=105.71 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=65.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
.+.++|||+|| ++++++|+++|++||+|..|.|. +++|||||+|.+.++|++| |..|||..+.++.|.|.-
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~A--i~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQA--VAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHH--HHHTTTEEETTEEEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHH--HHHhCCCeECCeEEEEEE
Confidence 45789999996 89999999999999999999884 5789999999999999999 999999999999998875
Q ss_pred C
Q 029987 176 I 176 (184)
Q Consensus 176 ~ 176 (184)
.
T Consensus 84 a 84 (97)
T 1x5p_A 84 A 84 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 160
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.65 E-value=7.3e-16 Score=118.09 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=74.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
..+.++|||+|||+.+++++|+++|++||.|..+.+..++ ++.++|||||+|.+.++|.+| ++.|||..+.++.|.|
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~~l~v 188 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA--IAGLNGMQLGDKKLLV 188 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHH--HHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHH--HHHcCCCEECCEEEEE
Confidence 3567899999999999999999999999999999999998 999999999999999999999 9999999999999888
Q ss_pred CC
Q 029987 174 DT 175 (184)
Q Consensus 174 ~~ 175 (184)
.-
T Consensus 189 ~~ 190 (198)
T 2yh0_A 189 QR 190 (198)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 161
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=4.8e-16 Score=116.60 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=70.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecC---eEEe
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMH---LQLL 172 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g---~~l~ 172 (184)
...++|||+|||+.+|+++|+++|++||.|..+.++.+++|.++|||||+|.+.++|.+| ++.|||..+.+ ++|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A--~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA--IKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHH--HHHHTTSCCCTTCSSCCE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHH--HHHhcCCcccCCCCCCeE
Confidence 356799999999999999999999999999999999999999999999999999999999 99999988863 7776
Q ss_pred eC
Q 029987 173 SD 174 (184)
Q Consensus 173 ~~ 174 (184)
|.
T Consensus 171 V~ 172 (175)
T 3nmr_A 171 VK 172 (175)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 162
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=4.1e-16 Score=121.02 Aligned_cols=78 Identities=14% Similarity=0.168 Sum_probs=70.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
..++|||+|||+++|+++|+++|+.||+|..|.|+.++ ++.++|||||+|.+.++|.+| ++.|++..+.++.|.|..
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A--~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLA--LEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHH--HHHHSSCCCC-CCCEEEC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHH--HHHccCCeeCCeeEEEec
Confidence 46799999999999999999999999999999999888 899999999999999999999 999999999999988854
Q ss_pred C
Q 029987 176 I 176 (184)
Q Consensus 176 ~ 176 (184)
.
T Consensus 105 ~ 105 (216)
T 2qfj_A 105 P 105 (216)
T ss_dssp C
T ss_pred C
Confidence 3
No 163
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.65 E-value=5.9e-16 Score=121.19 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=69.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 98 ~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
.++|||+|||+.+|+++|+++|++||.|..|.|+.|+. .++|||||+|.+.++|++| |+.|||..|.|+.|.|..
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~A--i~~lng~~~~g~~i~V~~ 177 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERA--IEKMNGMLLNDRKVFVGR 177 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHH--HHHHTTCEETTEECEEEE
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHH--HHHhCCCEECCEEEEEEE
Confidence 56899999999999999999999999999999998874 3799999999999999999 999999999999998863
No 164
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.64 E-value=1.3e-15 Score=113.71 Aligned_cols=78 Identities=22% Similarity=0.213 Sum_probs=72.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecC--eEE
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMH--LQL 171 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g--~~l 171 (184)
....++|||+|||+.+++++|+++|++||+|..+.+..++ ++.++|+|||+|.+.++|.+| ++.|||..+.+ ++|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~~~l 163 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA--ISALNNVIPEGGSQPL 163 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH--HHHHTTCCCTTCSSCC
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHH--HHHhcCCEecCCCeEE
Confidence 3457899999999999999999999999999999999998 899999999999999999999 99999999977 777
Q ss_pred eeC
Q 029987 172 LSD 174 (184)
Q Consensus 172 ~~~ 174 (184)
.|.
T Consensus 164 ~V~ 166 (168)
T 1b7f_A 164 SVR 166 (168)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 165
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=5.6e-16 Score=105.81 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=58.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCee--cCeEE
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEV--MHLQL 171 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~--~g~~l 171 (184)
...+.++|||+|||+++|+++|+++|++||+|.+|.|+.+ ++|||||+|.+.++|+++ ++..+ .++.|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~~------~~~~~~~~g~~v 76 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQSL------CGEDLIIKGISV 76 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHHH------TTCEEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHHH------cCCCcccCCEEE
Confidence 3456889999999999999999999999999999999864 789999999999887743 55544 58887
Q ss_pred eeCC
Q 029987 172 LSDT 175 (184)
Q Consensus 172 ~~~~ 175 (184)
.+..
T Consensus 77 ~v~~ 80 (89)
T 3d2w_A 77 HISN 80 (89)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 166
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=9.6e-16 Score=116.06 Aligned_cols=72 Identities=17% Similarity=0.125 Sum_probs=64.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecC--eEEeeC
Q 029987 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMH--LQLLSD 174 (184)
Q Consensus 98 ~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g--~~l~~~ 174 (184)
..+|||+||++.+|+++|+++|++||+|..|.|..+ .++|||||+|.+.++|++| ++.|||..|.+ +.|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~A--i~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHA--KLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHH--HHHSTTBCSSSSCSCEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHH--HHHhCCCEecCCCcEEEEE
Confidence 457899999999999999999999999999998643 2578999999999999999 99999999965 777765
No 167
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=1.3e-15 Score=116.51 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=71.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
...++|||+|||+++|+++|+++|+.||.|..|.|+.++ ++.++|||||+|.+.++|.+| |.. +|..+.|+.|.|.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A--~~~-~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI--VIQ-KYHTVNGHNCEVR 178 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH--HHC-SCCEETTEECEEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHH--HHh-CCcEECCEEEEEE
Confidence 356899999999999999999999999999999999998 899999999999999999999 876 7999999998876
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
-
T Consensus 179 ~ 179 (196)
T 1l3k_A 179 K 179 (196)
T ss_dssp E
T ss_pred e
Confidence 3
No 168
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=8.7e-16 Score=120.19 Aligned_cols=73 Identities=10% Similarity=0.022 Sum_probs=67.6
Q ss_pred CCcEEEEeCCC-CCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 97 VGTKLYVSNLH-PGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 97 ~~~~l~V~nL~-~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
++++|||+||| +.+++++|+++|++||.|.+|.|+.+ .+|||||+|.+.++|++| |+.|||..+.+++|.|..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~A--i~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRA--ITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHH--HHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHH--HHHhCCCEECCceEEEEE
Confidence 57899999999 89999999999999999999999854 378999999999999999 999999999999988873
No 169
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.3e-16 Score=105.62 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=60.0
Q ss_pred CcEEEEeCCCCCCCHHH----HHHHhhcc-CCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 98 GTKLYVSNLHPGVTNDD----IRELFSEI-GELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 98 ~~~l~V~nL~~~vt~~~----l~~~F~~~-G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
.|.|||+|||+.+++++ |+++|++| |+|..| ++ |+|||+|.+.++|++| ++.|||..+.+++|.
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A--~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERA--QKRMENEDVFGNRII 77 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHH--HHHHTTCCSSSSCCE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHH--HHHhcCCccCCceEE
Confidence 34499999999999988 55899999 599887 23 9999999999999999 999999999999998
Q ss_pred eCCC
Q 029987 173 SDTI 176 (184)
Q Consensus 173 ~~~~ 176 (184)
++-.
T Consensus 78 v~~A 81 (96)
T 2diu_A 78 VSFT 81 (96)
T ss_dssp EESS
T ss_pred EEec
Confidence 8643
No 170
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=9.1e-16 Score=115.08 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=64.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CC--CCceEEEEEeCChHHHHHHHHHHHhCCCeec
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NG--RPSVSSVACFATFSPLFLWVQLKWYMPEEVM 167 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g--~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~ 167 (184)
..++|||+|||+++|+++|+++|++||+|..|.|+.++ ++ +++|||||+|.+.++|++| ++.|++..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A--~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA--QNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHH--HHHHTTTCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHH--HHHhcCcEEc
Confidence 46799999999999999999999999999999999998 44 8999999999999999999 9999998774
No 171
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=1.6e-15 Score=117.77 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=69.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 98 ~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
.++|||+|||+++|+++|+++|++||+|..|.|..+.++.++|||||+|.+.++|++| |..++ ..+.|++|.|..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A--~~~~~-~~~~Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKF--VETPG-QKYKETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHH--HHCTT-CEETTEECEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHH--HHhCC-CeECCEEEEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999 87665 589999988763
No 172
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=2.3e-15 Score=109.94 Aligned_cols=71 Identities=17% Similarity=0.107 Sum_probs=63.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceE-EEEEeCChHHHHHHHHHHHhCCCeecC--eEEeeC
Q 029987 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVS-SVACFATFSPLFLWVQLKWYMPEEVMH--LQLLSD 174 (184)
Q Consensus 98 ~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~-afV~f~~~~~a~~A~~i~~l~g~~~~g--~~l~~~ 174 (184)
-..|||+||++.+|+++|+++|++||+|..|.|..+ .+|| |||+|.+.++|++| ++.|||..|.+ +.|.++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~A--i~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHA--KLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHH--HHHHTTCEEETTEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHH--HHHcCCCeecCCCcEEEEE
Confidence 447889999999999999999999999999988643 3677 99999999999999 99999999987 777665
No 173
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.61 E-value=1.2e-15 Score=113.93 Aligned_cols=74 Identities=20% Similarity=0.224 Sum_probs=66.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
+.++|||+|||+++|+++|+++|++||+|..|.|+.++ +|.++|||||+|.+.++|++| ++. +..+.|+.|.+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A--~~~--~~~~~g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEV--VKT--QHILDGKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHH--HHS--CCEETTEECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHH--Hhc--ccccCCeEcccc
Confidence 46799999999999999999999999999999999997 899999999999999999999 874 567777776654
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=2.4e-15 Score=111.78 Aligned_cols=73 Identities=21% Similarity=0.184 Sum_probs=68.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeE
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQ 170 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~ 170 (184)
...++|||+|||+.+++++|+++|++||+|..+.+..++ +|.++|+|||+|.+.++|.+| ++.|||..+.++.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA--IKGLNGQKPSGAT 159 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH--HHHHTTCCCTTCS
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHH--HHHhcCCccCCCc
Confidence 356799999999999999999999999999999999988 899999999999999999999 9999999998864
No 175
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.61 E-value=7.2e-16 Score=115.11 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=70.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
+.++|||+|||+++++++|+++|++||+|..+.+..++ +|.++|||||+|.+.++|.+| ++ +++..+.|+.|.|.-
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A--~~-~~~~~~~g~~i~V~~ 162 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV--CQ-NKFIDFKDRKIEIKR 162 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHH--HH-CSEECSSSSCEEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHH--Hh-CCCEEeCCeEEEEee
Confidence 35699999999999999999999999999999999997 899999999999999999999 76 899999999988763
No 176
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=5.5e-15 Score=107.18 Aligned_cols=69 Identities=13% Similarity=0.056 Sum_probs=61.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceE-EEEEeCChHHHHHHHHHHHhCCCeecC--eEEeeCC
Q 029987 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVS-SVACFATFSPLFLWVQLKWYMPEEVMH--LQLLSDT 175 (184)
Q Consensus 100 ~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~-afV~f~~~~~a~~A~~i~~l~g~~~~g--~~l~~~~ 175 (184)
.|||+||++.+++++|+++|++||+|..|.|.. + .|| |||+|.+.++|..| ++.|||..|.+ +.|.|+-
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~----~Gf~aFVef~~~~~A~~A--~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R----NGIQAMVEFESVLCAQKA--KAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S----SSEEEEEEESSHHHHHHH--HHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C----CCCEEEEEECCHHHHHHH--HHHhCCCEecCCCeEEEEEE
Confidence 578999999999999999999999999999864 2 276 99999999999999 99999999977 5776653
No 177
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=7.5e-15 Score=103.43 Aligned_cols=79 Identities=8% Similarity=-0.093 Sum_probs=69.3
Q ss_pred CCCcEEEEeCCCC-----CCCHHHHHHHhhccCCeeEEEEeeCC--CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecC
Q 029987 96 EVGTKLYVSNLHP-----GVTNDDIRELFSEIGELKRYAIHFDK--NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMH 168 (184)
Q Consensus 96 ~~~~~l~V~nL~~-----~vt~~~l~~~F~~~G~v~~v~i~~d~--~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g 168 (184)
.+.++|+|.||.. +.++++|+++|++||+|.+|.|+.++ ++.++|+|||+|.+.++|.+| ++.|||..+.|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~A--i~~lnG~~~~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKA--VVDLNGRYFGG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHH--HHHHTTCEETT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHH--HHHHCCCEECC
Confidence 3577999999952 24789999999999999999999887 468999999999999999999 99999999999
Q ss_pred eEEeeCCC
Q 029987 169 LQLLSDTI 176 (184)
Q Consensus 169 ~~l~~~~~ 176 (184)
+.|.+.-.
T Consensus 84 r~i~v~~a 91 (105)
T 2pe8_A 84 RVVKACFY 91 (105)
T ss_dssp EECEEEEC
T ss_pred cEEEEEEc
Confidence 99988643
No 178
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.1e-15 Score=103.53 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=60.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
...++|||+|||+++++++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++| +.. ...+.++.|.+..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~--~~~--~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSL--CGE--DLIIKGISVHISN 74 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHT--TTC--EEEETTEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHH--hcC--CceeCCEEEEEEe
Confidence 35789999999999999999999999999999998754 689999999999998766 332 3455888887764
Q ss_pred C
Q 029987 176 I 176 (184)
Q Consensus 176 ~ 176 (184)
.
T Consensus 75 a 75 (88)
T 1wf0_A 75 A 75 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.59 E-value=5.8e-15 Score=119.56 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=70.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHH----HHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIR----ELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHL 169 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~----~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~ 169 (184)
...+.++|||+|||+++++++|+ ++|++||.|..|.|.. +++++|||||+|.+.++|++| |+.|||..+.++
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A--~~~l~g~~~~g~ 80 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNA--LRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHH--HHHhcCCeeCCc
Confidence 34568899999999999999976 8999999999998764 788999999999999999999 999999999999
Q ss_pred EEeeCC
Q 029987 170 QLLSDT 175 (184)
Q Consensus 170 ~l~~~~ 175 (184)
.|.|..
T Consensus 81 ~l~v~~ 86 (282)
T 3pgw_A 81 PMRIQY 86 (282)
T ss_pred EEEEEE
Confidence 998863
No 180
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=3.8e-15 Score=107.41 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=65.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
..+.++|||+|| ++++++|+++|++||+|..|.|. .++|||||+|.+.++|++| |+.|||..+.++.|.|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~A--i~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQA--VAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHH--HHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHH--HHHhCCCEECCeEEEEE
Confidence 356789999996 69999999999999999999886 5789999999999999999 99999999999988876
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
-
T Consensus 107 ~ 107 (121)
T 2bz2_A 107 I 107 (121)
T ss_dssp E
T ss_pred E
Confidence 4
No 181
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.57 E-value=1.3e-14 Score=117.53 Aligned_cols=79 Identities=14% Similarity=0.010 Sum_probs=73.9
Q ss_pred CCCCcEEEEeCCCCCC-CHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 95 IEVGTKLYVSNLHPGV-TNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~v-t~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
....++|||+|||+.+ ++++|+++|+.||.|..+.|+.+++|.++|+|||+|.+.++|.+| +..|||..+.|+.|.|
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEA--QQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHH--HHHHTTCEETTEECEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHH--HHHhCCCccCCeEEEE
Confidence 3467899999999995 999999999999999999999999999999999999999999999 9999999999999887
Q ss_pred CC
Q 029987 174 DT 175 (184)
Q Consensus 174 ~~ 175 (184)
.-
T Consensus 259 ~~ 260 (284)
T 3smz_A 259 SF 260 (284)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 182
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.57 E-value=5.1e-15 Score=117.03 Aligned_cols=76 Identities=22% Similarity=0.223 Sum_probs=69.5
Q ss_pred CCCCCcEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 94 GIEVGTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~-~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
..++.++|||+|||+ ++++++|+++|++||+|..|.|+.++ +|||||+|.+.++|++| ++.|||..+.++.|.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~A--i~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLA--MSHLNGHKLHGKPIR 103 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHH--HHHHTTCBCSSSBCE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHH--HHHhCCCeECCeEEE
Confidence 345678999999999 99999999999999999999998765 68999999999999999 999999999999988
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|..
T Consensus 104 v~~ 106 (229)
T 2adc_A 104 ITL 106 (229)
T ss_dssp EEC
T ss_pred EEE
Confidence 853
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.56 E-value=7.7e-15 Score=110.50 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=67.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeCC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSDT 175 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~~ 175 (184)
...++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+| ++.|||..+.++.|.|+-
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A--~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKN--LEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHH--HHHHTEEEETTEEEEEEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHH--HHHhCCCEECCeEEEEEe
Confidence 456799999999999999999999999988665 55889999999999999999999 999999999999998863
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.56 E-value=2e-14 Score=116.49 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=73.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC-CCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK-NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~-~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
+..++|||+|||+++++++|+++|+.||+|..+.++.++ +|.++|||||+|.+.++|.+| +..|+|..+.++.|.+.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A--~~~l~~~~~~g~~i~v~ 170 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARA--KSDLLGKPLGPRTLYVH 170 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH--HHHHTTCEETTEECEEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHH--HHHhCCCEeCCcEEEEE
Confidence 356799999999999999999999999999999999988 999999999999999999999 99999999999998886
Q ss_pred C
Q 029987 175 T 175 (184)
Q Consensus 175 ~ 175 (184)
.
T Consensus 171 ~ 171 (284)
T 3smz_A 171 W 171 (284)
T ss_dssp E
T ss_pred E
Confidence 3
No 185
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.54 E-value=1.2e-14 Score=113.59 Aligned_cols=72 Identities=17% Similarity=0.095 Sum_probs=64.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCe--eEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCe
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGEL--KRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHL 169 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v--~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~ 169 (184)
.++.++|||+|||+++|+++|+++|++||.| ..+.+..++ +..+|+|||+|.+.++|.+| |..|||.+|.+.
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~A--i~~lng~~~~g~ 193 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALET--LGFLNHYQMKNP 193 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHH--HHHHTTCEECCS
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHH--HHHhCCCCccCC
Confidence 3467899999999999999999999999999 888887666 45569999999999999999 999999999766
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.54 E-value=1.6e-14 Score=117.43 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=72.0
Q ss_pred CCCCCcEEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEeeCCC--CCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeE
Q 029987 94 GIEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKN--GRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQ 170 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~-vt~~~l~~~F~~~G~v~~v~i~~d~~--g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~ 170 (184)
.....++|||.|||+. +++++|+++|+.||.|..|.|+.++. |.++|||||+|.+.++|.+| + .|||..+.++.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A--~-~l~g~~~~g~~ 282 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA--L-QMNRSLLGNRE 282 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHH--G-GGTTEEETTEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHH--H-HhcCCEECCcE
Confidence 3456789999999999 99999999999999999999998886 99999999999999999999 9 99999999999
Q ss_pred EeeCC
Q 029987 171 LLSDT 175 (184)
Q Consensus 171 l~~~~ 175 (184)
|.|.-
T Consensus 283 i~V~~ 287 (292)
T 2ghp_A 283 ISVSL 287 (292)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98763
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.54 E-value=2e-14 Score=116.86 Aligned_cols=81 Identities=11% Similarity=0.088 Sum_probs=68.5
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEE
Q 029987 92 ISGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQL 171 (184)
Q Consensus 92 ~~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l 171 (184)
.......++|||+|||+++|+++|+++|+.||+|..|.|..++.+ ++|||||+|.+.++|.+| | ++||..+.++.|
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A--~-~~~~~~~~g~~i 110 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAA--I-TKTHKVVGQNEI 110 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHH--H-TTTTCEETTEEC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHH--H-HhCCcEeCCcEE
Confidence 345567889999999999999999999999999999999988855 479999999999999999 8 599999999998
Q ss_pred eeCCC
Q 029987 172 LSDTI 176 (184)
Q Consensus 172 ~~~~~ 176 (184)
.+...
T Consensus 111 ~v~~~ 115 (292)
T 2ghp_A 111 IVSHL 115 (292)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 87643
No 188
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=1.5e-14 Score=116.56 Aligned_cols=79 Identities=23% Similarity=0.339 Sum_probs=70.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCee-c---CeEE
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEV-M---HLQL 171 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~-~---g~~l 171 (184)
.+.++|||+|||+.+|+++|+++|+.||+|..|.|+.+++|.++|||||+|.+.++|.+| |..||+..+ . +++|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A--~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKA--LERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHH--HHHHHHSCEESSSSCCBC
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHH--HHHhcCCeEEecCCCceE
Confidence 356799999999999999999999999999999999999999999999999999999999 999955444 3 8887
Q ss_pred eeCCC
Q 029987 172 LSDTI 176 (184)
Q Consensus 172 ~~~~~ 176 (184)
.|...
T Consensus 172 ~v~~~ 176 (261)
T 3sde_A 172 IVEPM 176 (261)
T ss_dssp EEEEC
T ss_pred EEeec
Confidence 77643
No 189
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=3.1e-14 Score=114.69 Aligned_cols=76 Identities=17% Similarity=0.119 Sum_probs=68.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEe
Q 029987 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLL 172 (184)
Q Consensus 93 ~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~ 172 (184)
......++|||+|||+++|+++|+++|+.||.|..|.|. +++|||||+|.+.++|.+| +..+||..+.++.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-----~~kg~afV~f~~~~~A~~A--~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-----RDRGFGFIRLESRTLAEIA--KAELDGTILKSRPLR 89 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-----TTTTEEEEECSSHHHHHHH--HHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-----CCCcEEEEEECCHHHHHHH--HHHcCCcEECCceeE
Confidence 344567899999999999999999999999999999986 4579999999999999999 999999999999988
Q ss_pred eCC
Q 029987 173 SDT 175 (184)
Q Consensus 173 ~~~ 175 (184)
|..
T Consensus 90 v~~ 92 (261)
T 3sde_A 90 IRF 92 (261)
T ss_dssp EEE
T ss_pred eee
Confidence 763
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.52 E-value=4.7e-14 Score=114.14 Aligned_cols=75 Identities=9% Similarity=-0.022 Sum_probs=68.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeec-CeEEe
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVM-HLQLL 172 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~-g~~l~ 172 (184)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++ +|||||+|.+.++|.+| ++.|||..+. ++.|.
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A--~~~l~g~~~~~g~~l~ 276 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAA--RDALQGFKITQNNAMK 276 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHH--HHHcCCcEeCCCCEEE
Confidence 44567899999999999999999999999999999998544 58999999999999999 9999999999 99988
Q ss_pred eC
Q 029987 173 SD 174 (184)
Q Consensus 173 ~~ 174 (184)
|+
T Consensus 277 v~ 278 (282)
T 3pgw_A 277 IS 278 (282)
T ss_pred EE
Confidence 75
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=3.8e-15 Score=112.20 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=68.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 94 GIEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 94 ~~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
.....++|||+|||+++++++|+++|+.||.+..+.+....++.++|||||+|.+.++|.+| | +|||..+.++.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A--~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKA--L-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHH--H-HGGGEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHH--H-hcCCCEeCCeEEEE
Confidence 44568899999999999999999999999987663333223788999999999999999999 8 59999999999988
Q ss_pred CCC
Q 029987 174 DTI 176 (184)
Q Consensus 174 ~~~ 176 (184)
...
T Consensus 86 ~~~ 88 (175)
T 1fje_B 86 EKP 88 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 754
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.51 E-value=1.6e-14 Score=111.09 Aligned_cols=71 Identities=24% Similarity=0.279 Sum_probs=66.4
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEeeC
Q 029987 98 GTKLYVSNLHP-GVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLSD 174 (184)
Q Consensus 98 ~~~l~V~nL~~-~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~~ 174 (184)
+++|||+|||+ ++++++|+++|++||.|..|.++.++ +|||||+|.+.++|++| +..|||..+.++.|.+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A--~~~l~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLA--MSHLNGHKLHGKPIRIT 74 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHH--HHHHTTCCCSSCCCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHH--HHHhCCCeecCeEEEEE
Confidence 57999999999 99999999999999999999998665 68999999999999999 99999999999988885
No 193
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=2.3e-14 Score=114.75 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=66.3
Q ss_pred CCCCcEEEEeCCCCCC---------CHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCe
Q 029987 95 IEVGTKLYVSNLHPGV---------TNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEE 165 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~v---------t~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~ 165 (184)
....++|||+||++.+ ++++|+++|++||+|..|.|+. ++|||||+|.+.++|+.| ++.|+|..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A--~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFA--KEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHH--HHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHH--HHHhCCCE
Confidence 4567899999999998 7999999999999999999983 579999999999999999 99999999
Q ss_pred e------------cCeEEeeC
Q 029987 166 V------------MHLQLLSD 174 (184)
Q Consensus 166 ~------------~g~~l~~~ 174 (184)
| .++.|.|.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~ 224 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVK 224 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEE
T ss_pred EeccccccccccCCCCEEEEE
Confidence 9 78877765
No 194
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.51 E-value=7.9e-15 Score=103.09 Aligned_cols=70 Identities=9% Similarity=0.021 Sum_probs=62.6
Q ss_pred EeCCCCCCCHHHHHHHh------------hccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeE
Q 029987 103 VSNLHPGVTNDDIRELF------------SEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQ 170 (184)
Q Consensus 103 V~nL~~~vt~~~l~~~F------------~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~ 170 (184)
+.||++.+++++|++.| ++||+|..|.|+.+++++++|||||+|.+.++|++| ++.|||..+.|++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A--~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKA--VIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHH--HHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHH--HHHHCCCEECCEE
Confidence 56777888888777666 999999999999888889999999999999999999 9999999999999
Q ss_pred EeeC
Q 029987 171 LLSD 174 (184)
Q Consensus 171 l~~~ 174 (184)
|.++
T Consensus 98 i~v~ 101 (104)
T 1jmt_A 98 IHAE 101 (104)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 8764
No 195
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.4e-13 Score=97.44 Aligned_cols=75 Identities=13% Similarity=0.199 Sum_probs=64.1
Q ss_pred CCCcEEEEeCCCCCCC-----------HHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCC
Q 029987 96 EVGTKLYVSNLHPGVT-----------NDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPE 164 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt-----------~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~ 164 (184)
.+..+|+|.||..... +++|+++|++||+|..|.| .++ .++|||||+|.+.++|++| ++.|||.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~A--i~~lng~ 87 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYC--IQTLDGR 87 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHH--HHHSTTC
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHH--HHHcCCC
Confidence 3577999999944332 5899999999999999965 554 3789999999999999999 9999999
Q ss_pred eecCeEEeeCC
Q 029987 165 EVMHLQLLSDT 175 (184)
Q Consensus 165 ~~~g~~l~~~~ 175 (184)
.+.+++|.+.-
T Consensus 88 ~~~gr~l~v~~ 98 (112)
T 2dit_A 88 WFGGRQITAQA 98 (112)
T ss_dssp EETTEECEEEE
T ss_pred EECCcEEEEEE
Confidence 99999988764
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=9.6e-14 Score=103.93 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=64.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcc----C-------CeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCe
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEI----G-------ELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEE 165 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~----G-------~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~ 165 (184)
+.++|||+|||+++|+++|+++|++| | .|..+.+. .++|||||+|.+.++|++| + .+||..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A--~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQA--M-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHH--G-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHH--H-HhCCcE
Confidence 46799999999999999999999999 6 66666664 4589999999999999999 9 999999
Q ss_pred ecCeEEeeCCCc
Q 029987 166 VMHLQLLSDTIM 177 (184)
Q Consensus 166 ~~g~~l~~~~~~ 177 (184)
+.++.|.+..+.
T Consensus 75 ~~g~~i~v~~~~ 86 (172)
T 2g4b_A 75 FQGQSLKIRRPH 86 (172)
T ss_dssp ETTEECEEECCS
T ss_pred ecCceeeecCCc
Confidence 999998887543
No 197
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.47 E-value=1.9e-13 Score=104.55 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=62.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcc----C-------CeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCe
Q 029987 97 VGTKLYVSNLHPGVTNDDIRELFSEI----G-------ELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEE 165 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~l~~~F~~~----G-------~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~ 165 (184)
..++|||+|||+++|+++|+++|++| | .|..+.+ +.++|||||+|.+.++|++| | .|||..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----~~~~g~afV~F~~~~~A~~A--l-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQA--M-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----ETTTTEEEEEESCSHHHHHH--G-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----cCCCCEEEEEeCCHHHHHHH--H-HhcCCE
Confidence 46799999999999999999999999 4 5555555 45689999999999999999 9 899999
Q ss_pred ecCeEEeeCCC
Q 029987 166 VMHLQLLSDTI 176 (184)
Q Consensus 166 ~~g~~l~~~~~ 176 (184)
+.++.|.+...
T Consensus 75 ~~g~~i~v~~~ 85 (198)
T 2yh0_A 75 FQGQSLKIRRP 85 (198)
T ss_dssp ETTEEEEEECC
T ss_pred EcCceEEEeCC
Confidence 99999988754
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.47 E-value=1.7e-13 Score=96.46 Aligned_cols=78 Identities=12% Similarity=0.042 Sum_probs=66.8
Q ss_pred CCCcEEEEeCC--CCCCC--------HHHHHHHhhccCCeeEEEEeeCCC---CCCceEEEEEeCChHHHHHHHHHHHhC
Q 029987 96 EVGTKLYVSNL--HPGVT--------NDDIRELFSEIGELKRYAIHFDKN---GRPSVSSVACFATFSPLFLWVQLKWYM 162 (184)
Q Consensus 96 ~~~~~l~V~nL--~~~vt--------~~~l~~~F~~~G~v~~v~i~~d~~---g~~~G~afV~f~~~~~a~~A~~i~~l~ 162 (184)
.+.+.|.+.|+ |..+. ++||++.|++||+|.+|.|+.++. +.++|++||+|.+.++|.+| ++.||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~A--i~~ln 80 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKA--MQGLT 80 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHH--HHHHT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHH--HHHhC
Confidence 35678899998 33333 368999999999999999988873 36799999999999999999 99999
Q ss_pred CCeecCeEEeeCC
Q 029987 163 PEEVMHLQLLSDT 175 (184)
Q Consensus 163 g~~~~g~~l~~~~ 175 (184)
|..+.|++|.+.-
T Consensus 81 G~~f~GR~i~v~~ 93 (105)
T 3v4m_A 81 GRKFANRVVVTKY 93 (105)
T ss_dssp TCEETTEECEEEE
T ss_pred CCEeCCCEEEEEE
Confidence 9999999998763
No 199
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.45 E-value=1.1e-13 Score=106.24 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=66.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeec-CeEEe
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVM-HLQLL 172 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G-~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~-g~~l~ 172 (184)
.++.++|||+|||+.+++++|+++|++|| .|..+.++.+ .+|+|||+|.+.++|.+| +..|||..+. ++.|.
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A--~~~l~g~~~~~g~~l~ 190 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQA--LIDLHNHDLGENHHLR 190 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHH--HHHHTSSCCSSCCSCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHH--HHHhcCCccCCCCeEE
Confidence 35678999999999999999999999999 9999998643 368999999999999999 9999999998 88877
Q ss_pred eC
Q 029987 173 SD 174 (184)
Q Consensus 173 ~~ 174 (184)
|+
T Consensus 191 v~ 192 (198)
T 1qm9_A 191 VS 192 (198)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.45 E-value=2.1e-13 Score=107.67 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=67.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccC-CeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeec-CeEEe
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIG-ELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVM-HLQLL 172 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G-~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~-g~~l~ 172 (184)
.++.++|||+|||+.+++++|+++|++|| .|..|.++.+ .+|+|||+|.+.++|.+| ++.|||..+. ++.|.
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~A--i~~l~g~~~~~g~~l~ 221 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQA--LIDLHNHDLGENHHLR 221 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHH--HHHHTTCBSSSSCBCE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHH--HHHHCCCccCCCCeEE
Confidence 45678999999999999999999999999 9999998632 468999999999999999 9999999998 88887
Q ss_pred eC
Q 029987 173 SD 174 (184)
Q Consensus 173 ~~ 174 (184)
|+
T Consensus 222 v~ 223 (229)
T 2adc_A 222 VS 223 (229)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 201
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=3.4e-13 Score=113.17 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=59.1
Q ss_pred CCCCcEEEEeC--CCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeec
Q 029987 95 IEVGTKLYVSN--LHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVM 167 (184)
Q Consensus 95 ~~~~~~l~V~n--L~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~ 167 (184)
..+..+|||+| |++.+|+++|+++|++||+|..|.+.. ++|||||+|.+.++|++| |+.|||.++.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~A--i~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRA--YVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHH--HHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHH--HHHhCCCccc
Confidence 45678999999 589999999999999999999887642 579999999999999999 9999999883
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.40 E-value=9.8e-13 Score=94.46 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=66.4
Q ss_pred CCcEEEEeCCC--C---CCCHHHHHHHhhccCCeeEEEEeeCC-----CCCCceEEEEEeCChHHHHHHHHHHHhCCCee
Q 029987 97 VGTKLYVSNLH--P---GVTNDDIRELFSEIGELKRYAIHFDK-----NGRPSVSSVACFATFSPLFLWVQLKWYMPEEV 166 (184)
Q Consensus 97 ~~~~l~V~nL~--~---~vt~~~l~~~F~~~G~v~~v~i~~d~-----~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~ 166 (184)
+++.|++.|+- . +-.++||++.|++||+|.+|.|+.++ +++++|++||+|.+.++|.+| ++.|||..+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~A--i~~LnGr~f 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKA--IQALNGRWF 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHH--HHHHTTCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHH--HHHHCCCEE
Confidence 57799999983 2 22468999999999999999998876 246789999999999999999 999999999
Q ss_pred cCeEEeeCC
Q 029987 167 MHLQLLSDT 175 (184)
Q Consensus 167 ~g~~l~~~~ 175 (184)
.|+.|.+.-
T Consensus 97 ~GR~i~v~~ 105 (118)
T 3ue2_A 97 AGRKVVAEV 105 (118)
T ss_dssp TTEECEEEE
T ss_pred CCcEEEEEE
Confidence 999988763
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.8e-11 Score=85.39 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=55.9
Q ss_pred CcEEEEeCCC-------CCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeE
Q 029987 98 GTKLYVSNLH-------PGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQ 170 (184)
Q Consensus 98 ~~~l~V~nL~-------~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~ 170 (184)
..+|.|.-.. ..+++++|+++|++||+|..|.|+ ++++|||||+|.+.++|+.| |+.+++ +.+++
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~A--i~~~~~--~~g~~ 81 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELA--VQNEVG--LVDNP 81 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHH--HHTCCB--CSSSB
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHH--HHhcCC--CCCCe
Confidence 4466665433 568999999999999999999987 57899999999999999999 888655 45666
Q ss_pred EeeC
Q 029987 171 LLSD 174 (184)
Q Consensus 171 l~~~ 174 (184)
|.|.
T Consensus 82 l~V~ 85 (100)
T 2d9o_A 82 LKIS 85 (100)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 6654
No 204
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.7e-11 Score=88.24 Aligned_cols=76 Identities=17% Similarity=0.109 Sum_probs=64.9
Q ss_pred CCCCCCCCCcEEEEeCCCCC-CCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCC-hHHHHHHHHHHHhC--CCe
Q 029987 90 AGISGIEVGTKLYVSNLHPG-VTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFAT-FSPLFLWVQLKWYM--PEE 165 (184)
Q Consensus 90 ~~~~~~~~~~~l~V~nL~~~-vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~-~~~a~~A~~i~~l~--g~~ 165 (184)
.+....++++.|||+||++. ++.++|+++|++||+|.+|.+..+.+ +|||.|.+ .++|..| +..+| +.+
T Consensus 10 ~~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~a--v~~ln~~~~~ 82 (121)
T 1owx_A 10 HGSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGK--AKDANNGNLQ 82 (121)
T ss_dssp CCCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHH--HHHTTTSCBC
T ss_pred cCcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHH--HHHhhcCCcE
Confidence 45677889999999999999 99999999999999999999986653 69999999 7899999 99994 566
Q ss_pred ecCeEEe
Q 029987 166 VMHLQLL 172 (184)
Q Consensus 166 ~~g~~l~ 172 (184)
|.+..+.
T Consensus 83 i~g~~~~ 89 (121)
T 1owx_A 83 LRNKEVT 89 (121)
T ss_dssp TTSSSEE
T ss_pred EeCcEEE
Confidence 6664433
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.25 E-value=3.7e-11 Score=85.67 Aligned_cols=75 Identities=8% Similarity=-0.019 Sum_probs=61.6
Q ss_pred CCCcEEEEeCC--CCCC--------CHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCe
Q 029987 96 EVGTKLYVSNL--HPGV--------TNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEE 165 (184)
Q Consensus 96 ~~~~~l~V~nL--~~~v--------t~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~ 165 (184)
.+.+.|.+.|+ +... .++||++.|++||.|.+|.|..+. ++|++||+|.+.++|.+| ++.|||..
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~A--i~~lnG~~ 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAA--VNALHGRW 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHH--HHHHTTCE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHH--HHHhCCCE
Confidence 35667888887 2221 235889999999999999886442 589999999999999999 99999999
Q ss_pred ecCeEEeeCC
Q 029987 166 VMHLQLLSDT 175 (184)
Q Consensus 166 ~~g~~l~~~~ 175 (184)
+.|+.|.+.-
T Consensus 80 f~GR~i~v~~ 89 (114)
T 3s6e_A 80 FAGKMITAAY 89 (114)
T ss_dssp ETTEECEEEE
T ss_pred ECCEEEEEEE
Confidence 9999998763
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=3.1e-10 Score=77.33 Aligned_cols=78 Identities=15% Similarity=0.085 Sum_probs=62.9
Q ss_pred CCCcEEEEeCCC----CCCCH----HHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeec
Q 029987 96 EVGTKLYVSNLH----PGVTN----DDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVM 167 (184)
Q Consensus 96 ~~~~~l~V~nL~----~~vt~----~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~ 167 (184)
++..+|+|.-.+ .+.-. .+|.+.|++||+|..+++..| .+||+|.+.++|.+| |+ |||.++.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaA--i~-mnG~~v~ 74 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNV--LS-LNGKELL 74 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHG--GG-GTTCEET
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHH--Hh-cCCeEeC
Confidence 456677787665 22333 679999999999999999854 389999999999999 97 9999999
Q ss_pred CeEEeeCCCcceeccC
Q 029987 168 HLQLLSDTIMYCWMEN 183 (184)
Q Consensus 168 g~~l~~~~~~~~~~~~ 183 (184)
|+.|.|.....=|..+
T Consensus 75 Gr~LkV~lkt~dW~~~ 90 (91)
T 2dnr_A 75 NRTITIALKSPSGPSS 90 (91)
T ss_dssp TEEEEEEECCCSSCSC
T ss_pred CeEEEEEeCCCCcccC
Confidence 9999998766556543
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2e-09 Score=73.70 Aligned_cols=72 Identities=11% Similarity=0.035 Sum_probs=59.8
Q ss_pred CCCCcEEEEeCCCCC-----CCH----HHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCe
Q 029987 95 IEVGTKLYVSNLHPG-----VTN----DDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEE 165 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~-----vt~----~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~ 165 (184)
-++..||+|.-++.. +-. .+|.+.|++||+|..+++..|+ +||+|.+.++|.+| |+ |||.+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~A--I~-ldG~~ 81 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSV--LD-VDGMK 81 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHH--HH-GGGSE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHH--Hh-cCCee
Confidence 346778889888643 222 5699999999999999998653 89999999999999 98 99999
Q ss_pred ecCeEEeeCCC
Q 029987 166 VMHLQLLSDTI 176 (184)
Q Consensus 166 ~~g~~l~~~~~ 176 (184)
+.++.|.|...
T Consensus 82 v~Gr~L~V~~k 92 (95)
T 1ufw_A 82 VKGRAVKISGP 92 (95)
T ss_dssp ETTEEEEEECC
T ss_pred eCCeEEEEecc
Confidence 99999998753
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.79 E-value=7.8e-09 Score=80.92 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=61.6
Q ss_pred CcEEEEeCC-----CCCCCHHHHHHHhhccCCeeEEEEeeCC-----CCCCceEEEEEeCChHHHHHHHHHHHhCCCeec
Q 029987 98 GTKLYVSNL-----HPGVTNDDIRELFSEIGELKRYAIHFDK-----NGRPSVSSVACFATFSPLFLWVQLKWYMPEEVM 167 (184)
Q Consensus 98 ~~~l~V~nL-----~~~vt~~~l~~~F~~~G~v~~v~i~~d~-----~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~ 167 (184)
...+.+.|+ ...-.+++|.+.|++||+|..+.|..+. ++.++|++||+|.+.++|.+| ++.|||..+.
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a--~~~l~gr~~~ 201 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKA--IQALNGRWFA 201 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHH--HHHHTTCBSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHH--HHHhcCceEC
Confidence 344555554 2334567899999999999999987544 458899999999999999999 9999999999
Q ss_pred CeEEeeC
Q 029987 168 HLQLLSD 174 (184)
Q Consensus 168 g~~l~~~ 174 (184)
|++|.+.
T Consensus 202 gr~i~~~ 208 (222)
T 3dxb_A 202 GRKVVAE 208 (222)
T ss_dssp SSBCEEE
T ss_pred CeEEEEE
Confidence 9998775
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.51 E-value=5e-07 Score=63.26 Aligned_cols=75 Identities=16% Similarity=0.081 Sum_probs=67.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcc-----CCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeE
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEI-----GELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQ 170 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~-----G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~ 170 (184)
+..++|-+-|||..|+...|+.|.+++ |.++.+.++.|. +-|+|+|.+...|-+| .-.++|.++.++.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKa--sLaL~G~ef~gr~ 91 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKM--LMILNGSQFQGKV 91 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHH--HHHHSSEEETTEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHH--HhhcCCeeecCeE
Confidence 346789999999999999999999999 999999998654 3599999999999999 8899999999999
Q ss_pred EeeCCCc
Q 029987 171 LLSDTIM 177 (184)
Q Consensus 171 l~~~~~~ 177 (184)
|.+.+..
T Consensus 92 Lr~gTv~ 98 (117)
T 2l9w_A 92 IRSGTIN 98 (117)
T ss_dssp EEEECHH
T ss_pred EEecCHH
Confidence 9987654
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=5.8e-05 Score=52.21 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=50.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhc-----cCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHH----hCCCe
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSE-----IGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKW----YMPEE 165 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~-----~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~----l~g~~ 165 (184)
...+.+|.|.|||+.+.++.|+-+|+. -|+|..+... + +-|+|+|.+.+.|++. |++ |++..
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~--~-----~~AvItF~d~~va~rV--L~k~~H~L~~~~ 75 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL--G-----CGGVLTFREPADAERV--LAQADHELHGAQ 75 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE--T-----TEEEEEESSHHHHHHH--HTCSCCBSSSSB
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc--C-----CcEEEEEcChHHHHHH--hcCCcceecCeE
Confidence 445789999999999999999999986 2577777664 1 5799999999999998 665 55544
Q ss_pred e
Q 029987 166 V 166 (184)
Q Consensus 166 ~ 166 (184)
+
T Consensus 76 L 76 (104)
T 2dhx_A 76 L 76 (104)
T ss_dssp C
T ss_pred E
Confidence 4
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.85 E-value=6.7e-05 Score=52.02 Aligned_cols=71 Identities=8% Similarity=-0.026 Sum_probs=57.7
Q ss_pred CCcEEEEeCCCCCC-C----HHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEE
Q 029987 97 VGTKLYVSNLHPGV-T----NDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQL 171 (184)
Q Consensus 97 ~~~~l~V~nL~~~v-t----~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l 171 (184)
-.++|+|.||+..| . .+.++++|..|+++...... ++-.=..|.|.+.++|.+| -.+|++..++|..|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l-----kSFRRirv~F~~~~~A~~A--R~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF-----KSFKRVRINFSNPLSAADA--RLRLHKTEFLGKEM 76 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE-----TTTTEEEEECSSTTHHHHH--HHTSTTSEETTEEC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec-----CcceEEEEEeCChHHHHHH--HHHhccceecCcee
Confidence 46789999998765 2 25779999999998776655 2333468999999999999 99999999999987
Q ss_pred eeC
Q 029987 172 LSD 174 (184)
Q Consensus 172 ~~~ 174 (184)
.+.
T Consensus 77 r~Y 79 (104)
T 1wey_A 77 KLY 79 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.83 E-value=0.00016 Score=49.03 Aligned_cols=66 Identities=12% Similarity=0.185 Sum_probs=53.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC--CC-CCceEEEEEeCChHHHHHHHHHHHhCCCee
Q 029987 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK--NG-RPSVSSVACFATFSPLFLWVQLKWYMPEEV 166 (184)
Q Consensus 99 ~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~--~g-~~~G~afV~f~~~~~a~~A~~i~~l~g~~~ 166 (184)
++|.|.+||+.+|++++.+.++....+.....+..+ .+ ....-|||.|.+.+++..- .+.++|..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f--~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILF--RDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHH--HHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHH--HHHhCCcEE
Confidence 689999999999999999999988777665554333 11 1246799999999999988 999999877
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.52 E-value=0.00043 Score=47.32 Aligned_cols=55 Identities=13% Similarity=0.156 Sum_probs=44.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHh
Q 029987 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWY 161 (184)
Q Consensus 98 ~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l 161 (184)
...||+-+.|..+...||.++|+.||.| .|.++-| -.|||.|.+++.|..| ++.+
T Consensus 15 r~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~a--l~~i 69 (100)
T 1whv_A 15 RDHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIA--VNTS 69 (100)
T ss_dssp CCSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEET------TEEEEECSCHHHHHHH--HHHH
T ss_pred CCeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcC------CeEEEEecCHHHHHHH--HHhc
Confidence 3355555999999999999999999954 5666644 2799999999999999 7655
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.14 E-value=0.0012 Score=45.19 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=44.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhC
Q 029987 100 KLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYM 162 (184)
Q Consensus 100 ~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~ 162 (184)
.||+-+.|..+...||.++|+.||. ..|.++-| -.|||.|.+++.|..| +..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidD------TsAlvvf~~~~~a~~a--l~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVKIA--VNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEE-EEEEEEET------TEEEEEEEEECHHHHH--HHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCC-EEEEEEcC------CeEEEEecCHHHHHHH--HHhcc
Confidence 3444499999999999999999994 46777644 2799999999999999 77654
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.96 E-value=0.0035 Score=44.43 Aligned_cols=65 Identities=11% Similarity=-0.092 Sum_probs=51.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecC
Q 029987 95 IEVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMH 168 (184)
Q Consensus 95 ~~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g 168 (184)
....+-|.|-+.|+.. ...|-..|++||+|.+... .++ ..+-.|.|.+..+|++| |. .||..+.+
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~---~~~--~NWihI~Y~s~~~A~rA--L~-kNG~ii~g 85 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM---SNT--GNWMHIRYQSKLQARKA--LS-KDGRIFGE 85 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE---CSS--SSEEEEEESSHHHHHHH--HT-TTTCEETT
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc---CCC--CCeEEEEeCCHHHHHHH--HH-hCCeEecC
Confidence 3456789999999985 5667888999999988765 222 34889999999999999 64 48888864
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.71 E-value=0.0018 Score=44.31 Aligned_cols=67 Identities=10% Similarity=0.142 Sum_probs=46.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCC--CCC-CceEEEEEeCChHHHHHHHHHHHhCCCee
Q 029987 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDK--NGR-PSVSSVACFATFSPLFLWVQLKWYMPEEV 166 (184)
Q Consensus 98 ~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~--~g~-~~G~afV~f~~~~~a~~A~~i~~l~g~~~ 166 (184)
.-+|.|..||+.+|++++.+.++..=++.....+..+ .+. ...-|||.|.+.++...- .+.++|..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F--~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLF--RDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHH--HHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHH--HHHcCCcEE
Confidence 4589999999999999877777654443221111111 111 124689999999999888 899998766
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.00 E-value=0.0052 Score=44.69 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=27.9
Q ss_pred EEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCC
Q 029987 127 RYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPE 164 (184)
Q Consensus 127 ~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~ 164 (184)
.+.|..+.. +++|||||+|.+.++|++| ++.+++.
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~a--l~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKV--FKQYAND 36 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHH--HHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHH--HHhhccc
Confidence 345555554 5899999999999999999 8887753
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.68 E-value=0.009 Score=51.71 Aligned_cols=53 Identities=8% Similarity=0.088 Sum_probs=38.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHH
Q 029987 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLW 155 (184)
Q Consensus 98 ~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A 155 (184)
.+.|+|. .|..+++.+|.+.|++||+|..+.+..+. .-||.|+|.+.+++..+
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~ 105 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSL 105 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHH
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHH
Confidence 3589997 79999999999999999999998765322 25999999998888866
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.21 E-value=0.032 Score=40.15 Aligned_cols=37 Identities=11% Similarity=-0.099 Sum_probs=32.5
Q ss_pred CCceEEEEEeCChHHHHHHHHHHHh-CCCeecCeEEeeCCC
Q 029987 137 RPSVSSVACFATFSPLFLWVQLKWY-MPEEVMHLQLLSDTI 176 (184)
Q Consensus 137 ~~~G~afV~f~~~~~a~~A~~i~~l-~g~~~~g~~l~~~~~ 176 (184)
..+|+++|+|.+.++|++| +++| ||..+.| +|.++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a--~~~~~ng~~~~G-~~~~~~a 48 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKV--FKQYANDNGVDG-EWTYDDA 48 (150)
T ss_dssp SSCEEEEEECSSHHHHTTT--HHHHHHHHTCCC-EEEEETT
T ss_pred cccccceeeecCHHHHHHH--HHHHhcCCCCCC-ceecccc
Confidence 5689999999999999999 9999 9999988 7777643
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.14 E-value=0.18 Score=36.14 Aligned_cols=68 Identities=9% Similarity=0.032 Sum_probs=46.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhccCCeeE-EEEeeC--------C-----CC-CCceEEEEEeCChHHHHHHHHHHHhC
Q 029987 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKR-YAIHFD--------K-----NG-RPSVSSVACFATFSPLFLWVQLKWYM 162 (184)
Q Consensus 98 ~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~-v~i~~d--------~-----~g-~~~G~afV~f~~~~~a~~A~~i~~l~ 162 (184)
.+-|.|=+.|+..+.. +-+.|++||.|.+ +.+..+ + .. ....+-.|+|++..+|.+| | ..|
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rA--L-~~N 82 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDA--L-LEN 82 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHH--H-TTT
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHH--H-HhC
Confidence 4567777887776554 6678999999876 211100 0 00 0135889999999999999 4 568
Q ss_pred CCeecCe
Q 029987 163 PEEVMHL 169 (184)
Q Consensus 163 g~~~~g~ 169 (184)
|..+.|.
T Consensus 83 G~ii~G~ 89 (132)
T 3p3d_A 83 GAVFNGV 89 (132)
T ss_dssp TCEETTE
T ss_pred CeEeCcE
Confidence 8888776
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.86 E-value=0.68 Score=40.35 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=44.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhC
Q 029987 98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYM 162 (184)
Q Consensus 98 ~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~ 162 (184)
...++|+ +|..+...+|.++|+.||.| .|.++. .-.|||.|.+.+.|..+ ++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid------dt~a~V~~~~~~~a~~~--l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID------DTSAFVSLSQPEQVQIA--VNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS------SSEEEEECSCHHHHHHH--HHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc------CCeEEEEECCHHHHHHH--HHHHH
Confidence 3456665 88899999999999999954 565542 23799999999999999 88885
No 222
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=89.76 E-value=0.089 Score=37.05 Aligned_cols=8 Identities=25% Similarity=0.563 Sum_probs=4.5
Q ss_pred CHHHHHhh
Q 029987 8 SLDDIIKS 15 (184)
Q Consensus 8 sLddii~~ 15 (184)
.+|..+.+
T Consensus 75 ~~d~~l~~ 82 (119)
T 1b34_A 75 PLDTLLVD 82 (119)
T ss_dssp CHHHHTC-
T ss_pred ccchhHhh
Confidence 56666654
No 223
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=75.89 E-value=6.6 Score=29.21 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=35.6
Q ss_pred cEEEEeCCCCC---------CCHHHHHHHh--hccCCeeEEEEeeCCCCCCceEEEEEeCC
Q 029987 99 TKLYVSNLHPG---------VTNDDIRELF--SEIGELKRYAIHFDKNGRPSVSSVACFAT 148 (184)
Q Consensus 99 ~~l~V~nL~~~---------vt~~~l~~~F--~~~G~v~~v~i~~d~~g~~~G~afV~f~~ 148 (184)
.++.|-|+|.. .+..+|.+.| +.|.++. |...+++.| +.|+|+|.|.+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~ 71 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNK 71 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecC
Confidence 36778888861 4457899977 8999875 555566655 67999999986
No 224
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=71.33 E-value=0.83 Score=31.07 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=0.0
Q ss_pred CCcEEEEeCCCCCCCHHH
Q 029987 97 VGTKLYVSNLHPGVTNDD 114 (184)
Q Consensus 97 ~~~~l~V~nL~~~vt~~~ 114 (184)
..++|||.|||+++|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 456899999999999864
No 225
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=64.02 E-value=29 Score=23.07 Aligned_cols=59 Identities=8% Similarity=0.035 Sum_probs=45.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCC
Q 029987 96 EVGTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMP 163 (184)
Q Consensus 96 ~~~~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g 163 (184)
...+-+.|-|+|..+-..++--.....|---.|+.+ .|.|.|.|.+.++..-| |+++-+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrla--iqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLA--IQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHH--HHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHH--HHHHHh
Confidence 356788899999999998887666666754455544 47899999999999999 887733
No 226
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=57.01 E-value=28 Score=21.36 Aligned_cols=65 Identities=18% Similarity=0.075 Sum_probs=38.6
Q ss_pred EEEEe-CCCCCCCHHHHHHHhhccCC-----eeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHhCCCeecCeEEee
Q 029987 100 KLYVS-NLHPGVTNDDIRELFSEIGE-----LKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWYMPEEVMHLQLLS 173 (184)
Q Consensus 100 ~l~V~-nL~~~vt~~~l~~~F~~~G~-----v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l~g~~~~g~~l~~ 173 (184)
+++|. +-...+...+|-.++..-+. |-.+.+. ..|.||+-.. +.|..+ ++.|++..+.++.+.+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-------d~~s~v~v~~-~~~~~~--~~~l~~~~i~g~~~~v 71 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-------DNASYVEILN-GKGPHV--LKVMKNTTVKGKQLKV 71 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-------SSCEEEEECT-TCHHHH--HHHHTTCCC---CCCE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-------CCcEEEEECH-HHHHHH--HHHhccccCcCceEEE
Confidence 45553 22345666777777765443 3456664 2378998864 578888 8999999998888765
Q ss_pred C
Q 029987 174 D 174 (184)
Q Consensus 174 ~ 174 (184)
.
T Consensus 72 ~ 72 (76)
T 2g0c_A 72 N 72 (76)
T ss_dssp E
T ss_pred E
Confidence 4
No 227
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=47.19 E-value=2.4 Score=36.03 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=12.3
Q ss_pred HHHHhhccCCeeEE
Q 029987 115 IRELFSEIGELKRY 128 (184)
Q Consensus 115 l~~~F~~~G~v~~v 128 (184)
|.+||.++++|..|
T Consensus 9 L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 9 LLALFAPRDPIPYL 22 (437)
T ss_pred HHHhcCCCCCCcCC
Confidence 78899999999876
No 228
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=40.30 E-value=17 Score=32.48 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=40.7
Q ss_pred eCCCCCCCHHHHHHHhh----ccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHh
Q 029987 104 SNLHPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWY 161 (184)
Q Consensus 104 ~nL~~~vt~~~l~~~F~----~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l 161 (184)
+..+.+.+--||..+|- .+|-|+++.|..-+--....++++.|.+.++|..+ +..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~a--v~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVAC--LREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHH--HHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhh--HHHH
Confidence 34556666678999982 57888888776555334456789999999999988 6655
No 229
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=39.03 E-value=4 Score=29.49 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=16.9
Q ss_pred HHHHHHhhccCCeeEEEEeeCCCCCCceEEEEEeC
Q 029987 113 DDIRELFSEIGELKRYAIHFDKNGRPSVSSVACFA 147 (184)
Q Consensus 113 ~~l~~~F~~~G~v~~v~i~~d~~g~~~G~afV~f~ 147 (184)
+|+.++|...|.|+.... .+||+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwfn~-------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV-------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET-------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC-------CCCeeEEeeC
Confidence 466677887887665432 3789999875
No 230
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=37.77 E-value=52 Score=22.04 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHhhc-cC---CeeEEEEeeCC--CCCCceEEEEEeCChHHHHHH
Q 029987 107 HPGVTNDDIRELFSE-IG---ELKRYAIHFDK--NGRPSVSSVACFATFSPLFLW 155 (184)
Q Consensus 107 ~~~vt~~~l~~~F~~-~G---~v~~v~i~~d~--~g~~~G~afV~f~~~~~a~~A 155 (184)
-.+++..+|++-..+ |+ .+..|.=.... .|++.|||.| |++.+.|.+-
T Consensus 27 ~~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 27 GSTPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SSCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 366788888877754 44 23333323333 5667788865 7777666554
No 231
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=37.30 E-value=34 Score=26.87 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=23.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeE
Q 029987 99 TKLYVSNLHPGVTNDDIRELFSEIGELKR 127 (184)
Q Consensus 99 ~~l~V~nL~~~vt~~~l~~~F~~~G~v~~ 127 (184)
.-+.|+|||++++..-|..++.. ..+..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~ 138 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFAR 138 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCE
Confidence 46789999999999999999977 54443
No 232
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=35.84 E-value=64 Score=21.85 Aligned_cols=46 Identities=4% Similarity=0.002 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHhhc-cCC---eeEEEEeeCC--CCCCceEEEEEeCChHHHHH
Q 029987 108 PGVTNDDIRELFSE-IGE---LKRYAIHFDK--NGRPSVSSVACFATFSPLFL 154 (184)
Q Consensus 108 ~~vt~~~l~~~F~~-~G~---v~~v~i~~d~--~g~~~G~afV~f~~~~~a~~ 154 (184)
.+++..+|++-..+ |+. +..|.=.... .|++.|||.| |++.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 46788888877753 442 2233323333 5667888865 677766654
No 233
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=34.56 E-value=63 Score=21.69 Aligned_cols=47 Identities=2% Similarity=-0.087 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHhhc-cC---CeeEEEEeeCC--CCCCceEEEEEeCChHHHHH
Q 029987 107 HPGVTNDDIRELFSE-IG---ELKRYAIHFDK--NGRPSVSSVACFATFSPLFL 154 (184)
Q Consensus 107 ~~~vt~~~l~~~F~~-~G---~v~~v~i~~d~--~g~~~G~afV~f~~~~~a~~ 154 (184)
-.+++..+|++-..+ |+ .+..|.=.... .|++.|||.| |++.+.|.+
T Consensus 27 ~~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 27 AATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp SCCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 367788888877753 44 22333323333 5667888865 667666544
No 234
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=32.84 E-value=22 Score=28.07 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=23.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCeeEE
Q 029987 99 TKLYVSNLHPGVTNDDIRELFSEIGELKRY 128 (184)
Q Consensus 99 ~~l~V~nL~~~vt~~~l~~~F~~~G~v~~v 128 (184)
..+.|+|||++++..-|..++.....+..+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~ 144 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQ 144 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEE
Confidence 457899999999999999999765445443
No 235
>2gpv_G Nuclear receptor corepressor 2; estrogen related receptor, ERR, ERRG, ESRRG, nuclear recepto steroid receptor, SMRT, tamoxifen, transcription; HET: OHT; 2.85A {Homo sapiens}
Probab=31.97 E-value=21 Score=17.61 Aligned_cols=10 Identities=40% Similarity=0.803 Sum_probs=8.0
Q ss_pred CCCHHHHHhh
Q 029987 6 DMSLDDIIKS 15 (184)
Q Consensus 6 d~sLddii~~ 15 (184)
+|-|++||.+
T Consensus 2 n~gleaiirk 11 (26)
T 2gpv_G 2 NMGLEAIIRK 11 (26)
T ss_pred ccCHHHHHHH
Confidence 5789999874
No 236
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=29.93 E-value=43 Score=25.82 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=19.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcc
Q 029987 100 KLYVSNLHPGVTNDDIRELFSEI 122 (184)
Q Consensus 100 ~l~V~nL~~~vt~~~l~~~F~~~ 122 (184)
.+.|+|||+.++..-|..++...
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~ 114 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYT 114 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTG
T ss_pred eEEEECCCCCccHHHHHHHHhcC
Confidence 57899999999999888887643
No 237
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=29.76 E-value=1.2e+02 Score=21.45 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHhhc-cCC---eeEEEEeeCC--CCCCceEEEEEeCChHHHHH
Q 029987 108 PGVTNDDIRELFSE-IGE---LKRYAIHFDK--NGRPSVSSVACFATFSPLFL 154 (184)
Q Consensus 108 ~~vt~~~l~~~F~~-~G~---v~~v~i~~d~--~g~~~G~afV~f~~~~~a~~ 154 (184)
.+++..||++-+.. |+. +..|.=+... .|++.|||.| |++.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 46889999998864 552 2223222333 5667788766 667766554
No 238
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=27.46 E-value=46 Score=28.56 Aligned_cols=42 Identities=7% Similarity=0.045 Sum_probs=29.4
Q ss_pred HHHHHh--hccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHH
Q 029987 114 DIRELF--SEIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLW 155 (184)
Q Consensus 114 ~l~~~F--~~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A 155 (184)
+|..+| +.+|-|+++.+...+.-.....+++.|.+.+++..|
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~ 260 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEI 260 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHH
Confidence 466777 368888888776555434445678999988887654
No 239
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=27.46 E-value=21 Score=27.78 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=22.9
Q ss_pred EEEEeCCCCCCCHHHHHHHhhccCCeeEE
Q 029987 100 KLYVSNLHPGVTNDDIRELFSEIGELKRY 128 (184)
Q Consensus 100 ~l~V~nL~~~vt~~~l~~~F~~~G~v~~v 128 (184)
-..|+|||+.++..-|..++.....+..+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~ 126 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDM 126 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheE
Confidence 34899999999999999999865555443
No 240
>2ovm_B NCOR, progesterone receptor; nuclear receptor, steroid receptor, CO-repressor, asoprisnil, transcription; HET: AS0; 2.60A {Homo sapiens}
Probab=26.76 E-value=28 Score=17.16 Aligned_cols=10 Identities=40% Similarity=0.919 Sum_probs=8.6
Q ss_pred CCCHHHHHhh
Q 029987 6 DMSLDDIIKS 15 (184)
Q Consensus 6 d~sLddii~~ 15 (184)
+|-|++||.+
T Consensus 10 ~~gleaiirk 19 (26)
T 2ovm_B 10 NLGLEDIIRK 19 (26)
T ss_pred ccCHHHHHHH
Confidence 7899999974
No 241
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=26.10 E-value=50 Score=25.35 Aligned_cols=27 Identities=19% Similarity=-0.005 Sum_probs=21.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhccCCe
Q 029987 99 TKLYVSNLHPGVTNDDIRELFSEIGEL 125 (184)
Q Consensus 99 ~~l~V~nL~~~vt~~~l~~~F~~~G~v 125 (184)
..+.|.|||+.++..-|..++.....+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~ 122 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCV 122 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGC
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCC
Confidence 347899999999999999888754333
No 242
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=24.96 E-value=38 Score=19.71 Aligned_cols=13 Identities=38% Similarity=0.585 Sum_probs=10.2
Q ss_pred CCCCCCCCHHHHHh
Q 029987 1 MATHVDMSLDDIIK 14 (184)
Q Consensus 1 m~~~ld~sLddii~ 14 (184)
|+-++ |.||.|+.
T Consensus 1 ~~~~~-~gle~i~~ 13 (52)
T 2kk7_A 1 MAVKL-MGVDKIKS 13 (52)
T ss_dssp CCTTT-SCHHHHHH
T ss_pred Ccchh-hhHHHHHH
Confidence 66677 88988876
No 243
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=24.87 E-value=83 Score=26.75 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHhh----ccCCeeEEEEeeCCCCCCceEEEEEeCChHHHHHHHHHHHh
Q 029987 106 LHPGVTNDDIRELFS----EIGELKRYAIHFDKNGRPSVSSVACFATFSPLFLWVQLKWY 161 (184)
Q Consensus 106 L~~~vt~~~l~~~F~----~~G~v~~v~i~~d~~g~~~G~afV~f~~~~~a~~A~~i~~l 161 (184)
+..+.+.-+|..+|- .+|-|+++.+...+.-.....+++.|.+.++|..+ +..+
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~--~~~~ 251 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKL--LGIA 251 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHH--HHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHH--HHHH
Confidence 344444456777763 45677887775555334456788999999999888 6655
No 244
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=24.43 E-value=1.1e+02 Score=21.99 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHhhc-cCC---eeEEEEeeCC--CCCCceEEEEEeCChHHHHH
Q 029987 108 PGVTNDDIRELFSE-IGE---LKRYAIHFDK--NGRPSVSSVACFATFSPLFL 154 (184)
Q Consensus 108 ~~vt~~~l~~~F~~-~G~---v~~v~i~~d~--~g~~~G~afV~f~~~~~a~~ 154 (184)
.+++..||++-+.. |+. +..|.=+... .|.+.|||.| |++.+.|.+
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 57888888888764 542 2223223333 5667788876 667766654
No 245
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=21.36 E-value=55 Score=21.81 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhhc-cCC---eeEEEEeeCC--CCCCceEEEEEeCChHHHH
Q 029987 108 PGVTNDDIRELFSE-IGE---LKRYAIHFDK--NGRPSVSSVACFATFSPLF 153 (184)
Q Consensus 108 ~~vt~~~l~~~F~~-~G~---v~~v~i~~d~--~g~~~G~afV~f~~~~~a~ 153 (184)
.+++..+|++-..+ |+. +..|.=.... .|++.|||.| |++.+.|.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~k 79 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAM 79 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 46788888777653 432 2222111222 4567788765 55555444
No 246
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=21.17 E-value=71 Score=20.79 Aligned_cols=30 Identities=10% Similarity=0.288 Sum_probs=24.9
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcc
Q 029987 93 SGIEVGTKLYVSNLHPGVTNDDIRELFSEI 122 (184)
Q Consensus 93 ~~~~~~~~l~V~nL~~~vt~~~l~~~F~~~ 122 (184)
......+.+.|...+..++.++..+|+..|
T Consensus 14 s~lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 14 TTLNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp --CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred cccCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 355677899999999999999999998887
No 247
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=20.62 E-value=73 Score=26.10 Aligned_cols=22 Identities=23% Similarity=0.092 Sum_probs=19.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhhc
Q 029987 100 KLYVSNLHPGVTNDDIRELFSE 121 (184)
Q Consensus 100 ~l~V~nL~~~vt~~~l~~~F~~ 121 (184)
.++|+|||++++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988888864
Done!