Query 029988
Match_columns 184
No_of_seqs 121 out of 883
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:46:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0859 Synaptobrevin/VAMP-lik 100.0 1.5E-57 3.3E-62 334.2 16.7 175 4-180 1-176 (217)
2 KOG0862 Synaptobrevin/VAMP-lik 100.0 1.5E-35 3.2E-40 222.3 17.1 176 5-181 1-186 (216)
3 KOG0861 SNARE protein YKT6, sy 100.0 3E-34 6.5E-39 207.3 13.4 172 4-180 1-188 (198)
4 COG5143 SNC1 Synaptobrevin/VAM 99.9 1.7E-24 3.7E-29 160.5 14.8 175 4-182 1-182 (190)
5 PF13774 Longin: Regulated-SNA 99.8 8.3E-20 1.8E-24 121.0 11.2 81 31-112 1-82 (83)
6 KOG0860 Synaptobrevin/VAMP-lik 99.7 1.6E-16 3.5E-21 108.7 7.5 53 128-180 28-80 (116)
7 PF00957 Synaptobrevin: Synapt 99.6 1.9E-15 4.1E-20 101.3 7.2 53 128-180 2-54 (89)
8 PF09426 Nyv1_N: Vacuolar R-SN 95.2 0.057 1.2E-06 38.2 5.2 56 32-87 47-110 (141)
9 PF04086 SRP-alpha_N: Signal r 94.8 0.043 9.4E-07 44.1 4.2 65 29-95 5-71 (279)
10 COG5143 SNC1 Synaptobrevin/VAM 94.5 0.037 8E-07 41.8 2.9 49 130-178 95-143 (190)
11 PF04099 Sybindin: Sybindin-li 92.9 1.9 4.2E-05 31.1 9.6 47 44-91 66-113 (142)
12 KOG0781 Signal recognition par 92.6 0.58 1.3E-05 40.5 7.3 87 7-95 4-96 (587)
13 PF04799 Fzo_mitofusin: fzo-li 86.3 5.2 0.00011 29.8 7.2 49 130-178 110-158 (171)
14 KOG0938 Adaptor complexes medi 85.3 20 0.00044 29.8 12.1 108 7-119 5-116 (446)
15 PF01217 Clat_adaptor_s: Clath 82.1 16 0.00034 26.0 10.6 49 46-94 48-96 (141)
16 KOG3369 Transport protein part 78.6 26 0.00056 26.3 9.4 73 44-119 122-196 (199)
17 smart00096 UTG Uteroglobin. 77.3 8.2 0.00018 24.3 4.7 41 115-155 22-62 (69)
18 KOG1983 Tomosyn and related SN 77.2 1.4 3.1E-05 41.7 1.8 35 146-180 944-978 (993)
19 PF01099 Uteroglobin: Uteroglo 74.7 7.4 0.00016 24.2 4.1 43 113-155 18-60 (67)
20 cd00633 Secretoglobin Secretog 72.7 12 0.00025 23.2 4.6 42 113-154 18-59 (67)
21 PF03310 Cauli_DNA-bind: Cauli 65.6 39 0.00085 23.7 6.3 22 157-178 27-48 (121)
22 PF00957 Synaptobrevin: Synapt 65.5 34 0.00074 22.2 7.1 54 129-182 10-63 (89)
23 PF03908 Sec20: Sec20; InterP 63.7 39 0.00085 22.2 6.3 40 134-176 6-45 (92)
24 COG3524 KpsE Capsule polysacch 60.9 18 0.00039 29.7 4.5 51 128-178 229-292 (372)
25 PF06008 Laminin_I: Laminin Do 59.2 88 0.0019 24.8 10.8 42 129-170 192-233 (264)
26 COG5122 TRS23 Transport protei 57.7 62 0.0013 22.5 9.5 75 41-118 55-131 (134)
27 KOG0811 SNARE protein PEP12/VA 57.3 59 0.0013 26.2 7.0 47 128-174 179-225 (269)
28 PHA02604 rI.-1 hypothetical pr 51.5 84 0.0018 22.2 6.5 80 71-152 37-123 (126)
29 PHA03011 hypothetical protein; 50.9 76 0.0016 21.5 6.2 56 111-169 63-118 (120)
30 PF04628 Sedlin_N: Sedlin, N-t 50.4 87 0.0019 22.0 7.9 49 46-94 55-107 (132)
31 PF03164 Mon1: Trafficking pro 48.1 96 0.0021 26.5 7.3 64 30-93 39-103 (415)
32 PF12277 DUF3618: Protein of u 44.6 60 0.0013 18.7 3.9 27 131-157 5-31 (49)
33 PF07897 DUF1675: Protein of u 43.2 26 0.00057 28.4 2.9 25 49-73 237-261 (284)
34 PF13228 DUF4037: Domain of un 41.7 1.1E+02 0.0023 20.6 6.9 58 108-170 23-80 (100)
35 PF07352 Phage_Mu_Gam: Bacteri 40.9 1.4E+02 0.0029 21.5 7.3 51 128-178 9-60 (149)
36 PHA01811 hypothetical protein 40.5 41 0.0009 20.7 2.8 20 43-62 4-23 (78)
37 PHA03386 P10 fibrous body prot 40.2 96 0.0021 20.7 4.7 16 128-143 18-33 (94)
38 PF06825 HSBP1: Heat shock fac 40.1 82 0.0018 18.8 4.1 19 155-173 33-51 (54)
39 PLN03223 Polycystin cation cha 38.5 1E+02 0.0022 30.8 6.3 45 127-171 1579-1623(1634)
40 PF12579 DUF3755: Protein of u 36.8 30 0.00065 18.7 1.7 19 128-146 16-34 (35)
41 PF12352 V-SNARE_C: Snare regi 36.8 96 0.0021 18.7 6.7 45 128-172 7-51 (66)
42 PRK11546 zraP zinc resistance 36.5 1.6E+02 0.0034 21.4 5.8 57 80-146 50-106 (143)
43 PF11675 DUF3271: Protein of u 36.2 1.3E+02 0.0028 23.8 5.6 51 4-55 29-79 (249)
44 PF05739 SNARE: SNARE domain; 36.1 94 0.002 18.3 7.7 42 129-170 4-45 (63)
45 cd05885 Ig2_Necl-4 Second immu 35.6 71 0.0015 20.5 3.6 59 8-73 4-66 (80)
46 PHA02503 putative transcriptio 35.6 33 0.00072 20.0 1.8 17 166-182 23-39 (57)
47 PHA02557 22 prohead core prote 34.4 2.5E+02 0.0053 22.7 7.4 96 78-174 89-192 (271)
48 PF12325 TMF_TATA_bd: TATA ele 34.3 57 0.0012 22.9 3.2 26 128-153 95-120 (120)
49 PF05659 RPW8: Arabidopsis bro 33.8 68 0.0015 23.2 3.7 49 110-159 32-81 (147)
50 PF05527 DUF758: Domain of unk 33.0 1.8E+02 0.0039 22.1 5.8 75 73-157 111-185 (186)
51 cd07634 BAR_GAP10-like The Bin 31.1 2.2E+02 0.0047 22.0 6.2 73 78-154 14-95 (207)
52 KOG2740 Clathrin-associated pr 30.6 1.7E+02 0.0036 24.8 5.7 43 52-94 54-96 (418)
53 PF11598 COMP: Cartilage oligo 30.5 1.1E+02 0.0024 17.5 3.8 24 129-152 8-31 (45)
54 KOG3230 Vacuolar assembly/sort 30.3 2.5E+02 0.0055 21.6 6.3 23 135-157 132-154 (224)
55 PF07439 DUF1515: Protein of u 30.3 1.9E+02 0.004 20.0 7.1 46 130-175 9-58 (112)
56 PF10112 Halogen_Hydrol: 5-bro 29.6 2.4E+02 0.0053 21.1 6.7 55 112-171 136-193 (199)
57 smart00397 t_SNARE Helical reg 29.2 1.2E+02 0.0027 17.6 7.8 49 128-176 11-59 (66)
58 KOG4117 Heat shock factor bind 28.3 1.5E+02 0.0033 18.3 6.8 18 156-173 47-64 (73)
59 cd00193 t_SNARE Soluble NSF (N 28.1 1.2E+02 0.0027 17.2 7.5 46 129-174 6-51 (60)
60 PF11074 DUF2779: Domain of un 26.9 2.3E+02 0.005 20.0 5.9 81 52-147 27-117 (130)
61 PHA00212 putative transcriptio 26.5 61 0.0013 19.3 1.9 16 167-182 27-42 (63)
62 PF08900 DUF1845: Domain of un 26.3 2.8E+02 0.006 21.5 6.1 44 109-152 41-85 (217)
63 PF13040 DUF3901: Protein of u 26.0 1.3E+02 0.0028 16.8 3.5 25 143-167 10-34 (40)
64 PF05531 NPV_P10: Nucleopolyhe 25.9 1.9E+02 0.004 18.5 4.4 40 128-171 17-56 (75)
65 PF05542 DUF760: Protein of un 24.6 71 0.0015 20.8 2.2 18 139-156 24-41 (86)
66 PF08858 IDEAL: IDEAL domain; 24.6 1.3E+02 0.0028 16.2 3.4 17 142-158 11-27 (37)
67 PLN00180 NDF6 (NDH-dependent f 24.6 1.4E+02 0.0029 22.1 3.7 31 141-171 143-173 (180)
68 PRK13729 conjugal transfer pil 24.1 3.3E+02 0.0071 24.0 6.6 43 128-173 75-120 (475)
69 KOG2866 Uncharacterized conser 24.1 3.8E+02 0.0083 22.5 6.7 44 127-170 87-130 (349)
70 PF10372 YojJ: Bacterial membr 23.9 2E+02 0.0043 18.2 5.8 50 129-181 17-66 (70)
71 TIGR01478 STEVOR variant surfa 23.7 81 0.0017 25.6 2.7 15 132-146 106-120 (295)
72 PTZ00478 Sec superfamily; Prov 23.1 1.4E+02 0.0029 19.5 3.2 30 152-181 9-38 (81)
73 PF11887 DUF3407: Protein of u 22.7 4E+02 0.0086 21.2 7.1 52 129-180 66-117 (267)
74 COG1463 Ttg2C ABC-type transpo 22.6 3.9E+02 0.0085 22.2 6.8 52 129-180 211-262 (359)
75 PTZ00370 STEVOR; Provisional 21.4 99 0.0021 25.2 2.8 22 130-151 103-124 (296)
76 PF04761 Phage_Treg: Lactococc 21.1 80 0.0017 18.5 1.6 22 161-182 18-39 (57)
77 COG0776 HimA Bacterial nucleoi 21.0 91 0.002 20.9 2.2 28 134-161 18-45 (94)
78 PF03555 Flu_C_NS2: Influenza 20.7 1.1E+02 0.0024 17.5 2.2 32 143-174 5-37 (57)
79 PF04136 Sec34: Sec34-like fam 20.7 3.4E+02 0.0075 19.7 7.5 20 143-162 45-64 (157)
80 PF10158 LOH1CR12: Tumour supp 20.4 3.1E+02 0.0068 19.4 5.0 23 128-150 86-108 (131)
81 TIGR03545 conserved hypothetic 20.1 3.5E+02 0.0077 24.2 6.2 52 128-179 190-241 (555)
No 1
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-57 Score=334.20 Aligned_cols=175 Identities=77% Similarity=1.117 Sum_probs=169.1
Q ss_pred cceEEEEEEeCCeeEEeecCCCCCHHHHHHHHhccCCCC-CCeeEEEEcCeEEEEEeeCCEEEEEEeeCCCCcccHHHHH
Q 029988 4 QSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPAT-NNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFL 82 (184)
Q Consensus 4 m~i~ya~Iar~~~iLae~~~~~~~~~~~a~~vL~ki~~~-~~k~~~~~~~~~fh~l~~~~~~~v~vt~~~~~~~~af~fL 82 (184)
|+|+|++||||++|||||++++|||.+++.++|+|||.+ ++|++|.+|+|.|||+.+||++|+|+++++.++++||.||
T Consensus 1 m~iiYs~VARGTvvLaeft~~~gNf~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL 80 (217)
T KOG0859|consen 1 MSIIYSFVARGTVILAEFTEFSGNFSSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL 80 (217)
T ss_pred CceeEEEEecceEEEEeeeeccCCHHHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence 799999999999999999999999999999999999976 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcccccccccchHHHHHHHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHH
Q 029988 83 ERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELL 162 (184)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L 162 (184)
++|++.|.+.|+.. +.++.+++++.+|++.|++.|++|.++|. .|++.+++.+++|||+||.+|||++|+|||+||.|
T Consensus 81 e~Ik~~F~k~YG~~-a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM~eNIekvldRGekiELL 158 (217)
T KOG0859|consen 81 ERIKEDFKKRYGGG-AHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELL 158 (217)
T ss_pred HHHHHHHHHHhccc-hhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEee
Confidence 99999999999975 78889999999999999999999988897 89999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhhhc
Q 029988 163 VDKTENLRSQVNLAVADC 180 (184)
Q Consensus 163 ~~kt~~L~~~s~~f~~~~ 180 (184)
++||++|+.+|..|++.+
T Consensus 159 VdKTenl~~~s~~fr~q~ 176 (217)
T KOG0859|consen 159 VDKTENLRSKSFDFRTQG 176 (217)
T ss_pred echhhhhhhhhHHHHHHH
Confidence 999999999999998865
No 2
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-35 Score=222.27 Aligned_cols=176 Identities=23% Similarity=0.407 Sum_probs=159.0
Q ss_pred ceEEEEEEeC--CeeEEeecC---CCCC----HHHHHHHHhccCCCC-CCeeEEEEcCeEEEEEeeCCEEEEEEeeCCCC
Q 029988 5 SLIYSFVARG--TVILAEYTE---FTGN----FTSIASQCLQKLPAT-NNKFTYNCDGHTFNYLVENGFTYCVVAVESAG 74 (184)
Q Consensus 5 ~i~ya~Iar~--~~iLae~~~---~~~~----~~~~a~~vL~ki~~~-~~k~~~~~~~~~fh~l~~~~~~~v~vt~~~~~ 74 (184)
.|++++|+|. ++|||..++ .+|+ +.+.++.+++++.+. ++++|++.+.|+|||++++|+||+++|+.+||
T Consensus 1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP 80 (216)
T KOG0862|consen 1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYP 80 (216)
T ss_pred CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCc
Confidence 3789999995 799998665 2344 468899999999755 89999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCcccccccccchHHHHHHHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 029988 75 RQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLD 154 (184)
Q Consensus 75 ~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ni~~il~ 154 (184)
+.+||+||+++.+||.+.|+......+.+|+.+.+|+++|++..++| +|+..++++.++++++.+|+.||.+||+++|+
T Consensus 81 ~kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~FieFD~~IQk~Kk~y-nd~r~~~n~~~~n~el~~v~~im~~niedvl~ 159 (216)
T KOG0862|consen 81 RKLAFSYLEDLAQEFDKSYGKNIIQPASRPYAFIEFDTFIQKTKKRY-NDTRSQRNLLKLNQELQDVQRIMVENLEDVLQ 159 (216)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCccCCCeeEEehhHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 99999999999999999999876665677888999999999999999 66777899999999999999999999999999
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHhhhcc
Q 029988 155 RGEKIELLVDKTENLRSQVNLAVADCL 181 (184)
Q Consensus 155 Rge~L~~L~~kt~~L~~~s~~f~~~~~ 181 (184)
|||.|+.|..++.+|+..|+...+++.
T Consensus 160 rg~~l~~l~~~~s~l~~~s~~y~~~a~ 186 (216)
T KOG0862|consen 160 RGEVLNALSSMASELSSESRKYPKTAK 186 (216)
T ss_pred hchHHHhhhhhhhcccHHHHhhHHHHH
Confidence 999999999999999999988877664
No 3
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-34 Score=207.33 Aligned_cols=172 Identities=19% Similarity=0.302 Sum_probs=143.4
Q ss_pred cceEEEEEEeC----CeeEEeecC------C-CCCHH----HHHHHHhccCCCCCCeeEEEEcCeEEEEEee-CCEEEEE
Q 029988 4 QSLIYSFVARG----TVILAEYTE------F-TGNFT----SIASQCLQKLPATNNKFTYNCDGHTFNYLVE-NGFTYCV 67 (184)
Q Consensus 4 m~i~ya~Iar~----~~iLae~~~------~-~~~~~----~~a~~vL~ki~~~~~k~~~~~~~~~fh~l~~-~~~~~v~ 67 (184)
|.|++-.|-+. .++|+.-++ + .|+.. -+++.+.++.++ ..+++++++.|.+|.... ||+++|+
T Consensus 1 Mki~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~-g~rqsvk~~~Y~~h~yvrndgL~~V~ 79 (198)
T KOG0861|consen 1 MKIYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGP-GQRQSVKHEEYLVHVYVRNDGLCGVL 79 (198)
T ss_pred CceEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCc-ccccccccceeEEEEEEecCCeeEEE
Confidence 66777777775 255554322 2 23322 367888888875 568899999999888876 5999999
Q ss_pred EeeCCCCcccHHHHHHHHHHHHHhhcCCCCcccccccccchHHHHHHHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHH
Q 029988 68 VAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMME 147 (184)
Q Consensus 68 vt~~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ 147 (184)
++|.+||.|+||.+|+++.++|....+..+|+...+. ...| +.|..++.+| +||.+.|+|.++|++|+|+|.||++
T Consensus 80 ~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~~~~~~--~~~~-~~L~~~l~ky-qdP~ead~l~kvQ~EldETKiiLhk 155 (198)
T KOG0861|consen 80 IADDEYPVRVAFTLLNKVLDEFTTKVPATQWPVGETA--DLSY-PYLDTLLSKY-QDPAEADPLLKVQNELDETKIILHK 155 (198)
T ss_pred EecCcCchhHHHHHHHHHHHHHhhcCcccccCcCCCc--CCCc-hhHHHHHHHh-cChhhhChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999877777778743322 2345 7999999999 9999999999999999999999999
Q ss_pred hHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 148 NIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 148 ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
+|+.+|+|||+||+|++||+.|+.+|++|++.+
T Consensus 156 TiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsA 188 (198)
T KOG0861|consen 156 TIESVLERGEKLDDLVSKSENLSLQSKMFYKSA 188 (198)
T ss_pred HHHHHHHccchHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999999999999999999999999875
No 4
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.93 E-value=1.7e-24 Score=160.48 Aligned_cols=175 Identities=21% Similarity=0.287 Sum_probs=137.8
Q ss_pred cceEEEEEEeCC--eeEEee-cCCCCCH--HHHHHHHhccCC-CCCCeeEEEEcCeEEEEEeeC-CEEEEEEeeCCCCcc
Q 029988 4 QSLIYSFVARGT--VILAEY-TEFTGNF--TSIASQCLQKLP-ATNNKFTYNCDGHTFNYLVEN-GFTYCVVAVESAGRQ 76 (184)
Q Consensus 4 m~i~ya~Iar~~--~iLae~-~~~~~~~--~~~a~~vL~ki~-~~~~k~~~~~~~~~fh~l~~~-~~~~v~vt~~~~~~~ 76 (184)
|.++|..+..+. .+|++- +..+..| ...+..+|+++. ...++.+++.++|.|||.-.+ |++|+|+|++++|.+
T Consensus 1 i~s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~ 80 (190)
T COG5143 1 IASISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNK 80 (190)
T ss_pred CceEEEEeecCCcceeeccccccCcccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchh
Confidence 456666666663 333332 2222222 367788888874 345567888899999999765 999999999999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCcccccccccchHHHHHHHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 029988 77 IPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRG 156 (184)
Q Consensus 77 ~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ni~~il~Rg 156 (184)
.|+..++++..+|.......++..+..+.....|++.+++ + | ++|..+|++.+++.+++|||++|.+||+++|.||
T Consensus 81 la~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~~~d~~~e~--~-y-~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ 156 (190)
T COG5143 81 LAYGYLNSIATEFLKSSALEQLIDDTVGIMRVNIDKVIEK--G-Y-RDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRD 156 (190)
T ss_pred hhhHHHHhhccHhhhhhhHhhcccCccchhhhhHHHHHHh--h-c-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999887776555554444455566666665 2 7 7788899999999999999999999999999999
Q ss_pred hhhHHHHHhHHHHHHHHHHHhhhccc
Q 029988 157 EKIELLVDKTENLRSQVNLAVADCLF 182 (184)
Q Consensus 157 e~L~~L~~kt~~L~~~s~~f~~~~~~ 182 (184)
|+|+.|+++|+.|..+|++|++.+-+
T Consensus 157 ekl~~lv~~ss~L~~~s~~~~k~akk 182 (190)
T COG5143 157 EKLDLLVDLSSILLLSSKMFPKSAKK 182 (190)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987643
No 5
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=99.83 E-value=8.3e-20 Score=121.02 Aligned_cols=81 Identities=35% Similarity=0.678 Sum_probs=71.2
Q ss_pred HHHHHhccCCCCC-CeeEEEEcCeEEEEEeeCCEEEEEEeeCCCCcccHHHHHHHHHHHHHhhcCCCCcccccccccchH
Q 029988 31 IASQCLQKLPATN-NKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKE 109 (184)
Q Consensus 31 ~a~~vL~ki~~~~-~k~~~~~~~~~fh~l~~~~~~~v~vt~~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~ 109 (184)
+|+++|+++++.. +|.+++.+++.|||++++|++|+|||++++|.++||.||++|+++|...|+...+.++.++++ .+
T Consensus 1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~~~~~-~~ 79 (83)
T PF13774_consen 1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSASPYSF-KE 79 (83)
T ss_dssp HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTSTTTTT-HH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccCCcch-hh
Confidence 5889999999544 899999999999999999999999999999999999999999999999999656777777776 88
Q ss_pred HHH
Q 029988 110 FGS 112 (184)
Q Consensus 110 F~~ 112 (184)
|++
T Consensus 80 F~~ 82 (83)
T PF13774_consen 80 FDS 82 (83)
T ss_dssp HHH
T ss_pred cCC
Confidence 865
No 6
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.6e-16 Score=108.65 Aligned_cols=53 Identities=40% Similarity=0.563 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
++++..+|++++||++||++||+|+|||||||++|++||+.|.+.|..|.+.+
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A 80 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTA 80 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999998765
No 7
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.61 E-value=1.9e-15 Score=101.35 Aligned_cols=53 Identities=45% Similarity=0.634 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
+|++.++++++++|+++|.+||+++++|||+|+.|++||++|+..|..|.+.|
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a 54 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNA 54 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999876
No 8
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=95.25 E-value=0.057 Score=38.24 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=37.2
Q ss_pred HHHHhccC-CCC---CCeeEEE-EcCeEEEEEe---eCCEEEEEEeeCCCCcccHHHHHHHHHH
Q 029988 32 ASQCLQKL-PAT---NNKFTYN-CDGHTFNYLV---ENGFTYCVVAVESAGRQIPIAFLERVKE 87 (184)
Q Consensus 32 a~~vL~ki-~~~---~~k~~~~-~~~~~fh~l~---~~~~~~v~vt~~~~~~~~af~fL~~i~~ 87 (184)
-..|++|+ |-. ..|++.. ++||-++|-. +++-+++|++..+.|+.+|...|.+++.
T Consensus 47 ~dmVlPkVV~v~GNKVTK~S~~lIDGyDCYYTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK~ 110 (141)
T PF09426_consen 47 HDMVLPKVVPVEGNKVTKMSMHLIDGYDCYYTTEDNDDNKVLVCFTRVDVPKILPIRLLSELKG 110 (141)
T ss_dssp HHTTGGG----SS-SSEE--S--SSSEEEEE---SS-TTEEEEEEEETTS-SSHHHHHHHHHTT
T ss_pred hhccccceEEccCCeEEEEEeecccccceeeecccCCCCeEEEEEEecCCcceecHHHHHhhcc
Confidence 35566775 322 2455555 5999988888 3679999999999999999999999863
No 9
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=94.78 E-value=0.043 Score=44.05 Aligned_cols=65 Identities=20% Similarity=0.342 Sum_probs=40.8
Q ss_pred HHHHHHHhccCCCCCCeeEEEEcCeEEEEEeeC--CEEEEEEeeCCCCcccHHHHHHHHHHHHHhhcCC
Q 029988 29 TSIASQCLQKLPATNNKFTYNCDGHTFNYLVEN--GFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGG 95 (184)
Q Consensus 29 ~~~a~~vL~ki~~~~~k~~~~~~~~~fh~l~~~--~~~~v~vt~~~~~~~~af~fL~~i~~~f~~~~~~ 95 (184)
..+++.||-.=.. +..+|.+++|..+|...+ +++||+|-..-..-...=.||+.|+..|...|.+
T Consensus 5 n~LI~~vlleeR~--~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~ 71 (279)
T PF04086_consen 5 NALIRDVLLEERS--GNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKN 71 (279)
T ss_dssp HHHHHHTGGG---------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhheeecc--CCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhH
Confidence 3556666632221 334688999998888876 6899999988887777778999999999999875
No 10
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=94.49 E-value=0.037 Score=41.77 Aligned_cols=49 Identities=22% Similarity=0.412 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhh
Q 029988 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVA 178 (184)
Q Consensus 130 kl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~ 178 (184)
+...++..+++++.+|..|+|+.++||++.....|+..+|..+.+.|.+
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~ 143 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKR 143 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999887753
No 11
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=92.95 E-value=1.9 Score=31.09 Aligned_cols=47 Identities=9% Similarity=0.157 Sum_probs=31.9
Q ss_pred CeeEEEEcCeEEEEEee-CCEEEEEEeeCCCCcccHHHHHHHHHHHHHh
Q 029988 44 NKFTYNCDGHTFNYLVE-NGFTYCVVAVESAGRQIPIAFLERVKEDFNK 91 (184)
Q Consensus 44 ~k~~~~~~~~~fh~l~~-~~~~~v~vt~~~~~~~~af~fL~~i~~~f~~ 91 (184)
+-.+++.+.|..|+.-. .|+-|+++|++..+. ..-.++..+.+-|..
T Consensus 66 g~~~~~T~~yklh~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~d 113 (142)
T PF04099_consen 66 GFESFETDTYKLHCFETPTGLKFVLITDPNVPS-LRDELLRIYYELYVD 113 (142)
T ss_dssp SEEEEEESS-EEEEEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCEEEEEEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHH
Confidence 45688899999999864 899999999998853 444556666665644
No 12
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=0.58 Score=40.48 Aligned_cols=87 Identities=16% Similarity=0.275 Sum_probs=62.2
Q ss_pred EEEEEEeCCeeEEeecCCCCCHH----HHHHHHhccCCCCCCeeEEEEcCeEEEEEe--eCCEEEEEEeeCCCCcccHHH
Q 029988 7 IYSFVARGTVILAEYTEFTGNFT----SIASQCLQKLPATNNKFTYNCDGHTFNYLV--ENGFTYCVVAVESAGRQIPIA 80 (184)
Q Consensus 7 ~ya~Iar~~~iLae~~~~~~~~~----~~a~~vL~ki~~~~~k~~~~~~~~~fh~l~--~~~~~~v~vt~~~~~~~~af~ 80 (184)
.|+.+.+|+++|+.|.....+|. .+++.+|-.=.... .+++.+.|...|-. +-+++|+|+-.+-..-..+-.
T Consensus 4 ~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er~~~--~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv~~ 81 (587)
T KOG0781|consen 4 QFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSERGGV--NSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYVDK 81 (587)
T ss_pred eeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhhcCc--ccCchhheeEeeeecCCccEEEEEEEeccchhhhHHH
Confidence 68899999999999987655554 44455443211111 12556666655544 457999999988888888889
Q ss_pred HHHHHHHHHHhhcCC
Q 029988 81 FLERVKEDFNKRYGG 95 (184)
Q Consensus 81 fL~~i~~~f~~~~~~ 95 (184)
||+++.+.|...|..
T Consensus 82 ll~~v~~~f~e~~~~ 96 (587)
T KOG0781|consen 82 LLNDVLNLFREKYDT 96 (587)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988864
No 13
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=86.33 E-value=5.2 Score=29.84 Aligned_cols=49 Identities=20% Similarity=0.348 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhh
Q 029988 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVA 178 (184)
Q Consensus 130 kl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~ 178 (184)
-...+..++++++.-|.+.|+++-..-++||.+..++..|.+.+..+..
T Consensus 110 tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~ 158 (171)
T PF04799_consen 110 TFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLES 158 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999998887765543
No 14
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.31 E-value=20 Score=29.81 Aligned_cols=108 Identities=15% Similarity=0.290 Sum_probs=67.5
Q ss_pred EEEEEEeCCeeEEee-cC-CCCCHHHHHH-HHhccCCCCCCee-EEEEcCeEEEEEeeCCEEEEEEeeCCCCcccHHHHH
Q 029988 7 IYSFVARGTVILAEY-TE-FTGNFTSIAS-QCLQKLPATNNKF-TYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFL 82 (184)
Q Consensus 7 ~ya~Iar~~~iLae~-~~-~~~~~~~~a~-~vL~ki~~~~~k~-~~~~~~~~fh~l~~~~~~~v~vt~~~~~~~~af~fL 82 (184)
+|..=.||.++++-. -+ -.++..++.+ .++.. .+.+. ..+.++-+|||...+++-.++||.........|.||
T Consensus 5 lfi~n~rGevlink~fr~dlkrs~~diFRv~vi~n---~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~eFl 81 (446)
T KOG0938|consen 5 LFIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINN---LDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFEFL 81 (446)
T ss_pred EEEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhc---cccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhHHHHH
Confidence 444556888888764 33 2445443332 12222 12222 456799999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcccccccccchHHHHHHHHhhh
Q 029988 83 ERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQ 119 (184)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~ 119 (184)
.++-+-+..-++.. ...+..+....-| ..|.++|.
T Consensus 82 ~kl~avm~aYfgk~-~Eeaiknnf~lI~-ElLDemld 116 (446)
T KOG0938|consen 82 YKLDAVMNAYFGKD-REEAIKNNFVLIY-ELLDEMLD 116 (446)
T ss_pred HHHHHHHHHHhccc-chhhhhhceEeHH-HHHHHHHh
Confidence 99888877655521 1222222222222 35666766
No 15
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=82.14 E-value=16 Score=26.01 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=41.8
Q ss_pred eEEEEcCeEEEEEeeCCEEEEEEeeCCCCcccHHHHHHHHHHHHHhhcC
Q 029988 46 FTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYG 94 (184)
Q Consensus 46 ~~~~~~~~~fh~l~~~~~~~v~vt~~~~~~~~af~fL~~i~~~f~~~~~ 94 (184)
-.+.++++.+-|...+++.++++++.+...-....||..+.+-+..-++
T Consensus 48 ~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~~e~l~~~v~~l~~~~~ 96 (141)
T PF01217_consen 48 PIFEHDNYRIVYKRYSDLYFVVVGDENENELLLLEFLHRLVEVLDDYFG 96 (141)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEESSTSBHHHHHHHHHHHHHHHHHHHS
T ss_pred eeeecccceeeeEeeccEEEEEEeecccchHHHHHHHHHhhhhhhhhhc
Confidence 3577899999999899999999999988888889999888887776555
No 16
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.58 E-value=26 Score=26.33 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=46.2
Q ss_pred CeeEEEEcCeEEEEEee-CCEEEEEEeeCCCCcccHHHHHHHHHHHHHhhcCCCCccccc-ccccchHHHHHHHHhhh
Q 029988 44 NKFTYNCDGHTFNYLVE-NGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAV-ANSLNKEFGSKLKEHMQ 119 (184)
Q Consensus 44 ~k~~~~~~~~~fh~l~~-~~~~~v~vt~~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~-~~~~~~~F~~~l~~~~~ 119 (184)
+...++.+.+..|+... .|+-|++|+++.. ..|=.+|..|...|.. |....+--+. -|--+..|+..|+.+.+
T Consensus 122 Gie~LetdtF~l~~~QTlTG~KFVvis~~~~--~~aD~lLrKiYelYsD-yvlKNPfYSlEMPIRc~lFDe~lk~~le 196 (199)
T KOG3369|consen 122 GIEVLETDTFTLHIFQTLTGTKFVVIAEPGT--QGADSLLRKIYELYSD-YVLKNPFYSLEMPIRCELFDEKLKFLLE 196 (199)
T ss_pred ceEEEEeccEEEEEEEccCCcEEEEEecCCc--hhHHHHHHHHHHHHHH-HhhcCCccCcccceeHHHhhHHHHHHHh
Confidence 34566778998887764 8999999997754 6788899999887753 4321111000 01124557767766554
No 17
>smart00096 UTG Uteroglobin.
Probab=77.28 E-value=8.2 Score=24.33 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=32.0
Q ss_pred HHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 029988 115 KEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (184)
Q Consensus 115 ~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ni~~il~R 155 (184)
...++.|+.+|...+...++++-+|....-=..||-++|++
T Consensus 22 ~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~k 62 (69)
T smart00096 22 EASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEK 62 (69)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56667888888888889999999988766667777776654
No 18
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.16 E-value=1.4 Score=41.71 Aligned_cols=35 Identities=14% Similarity=0.317 Sum_probs=30.6
Q ss_pred HHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 146 MENIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 146 ~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
..--+.+++|||+|+.++++|++|.+.+++|...+
T Consensus 944 ~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a 978 (993)
T KOG1983|consen 944 SGALQPLNERGERLSRLEERTAEMANSAKQFSSTA 978 (993)
T ss_pred hhcchhhHhhccccchHHHHHHHhhccHHHHHHHH
Confidence 34457788999999999999999999999998765
No 19
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=74.69 E-value=7.4 Score=24.15 Aligned_cols=43 Identities=28% Similarity=0.368 Sum_probs=31.2
Q ss_pred HHHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 029988 113 KLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (184)
Q Consensus 113 ~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ni~~il~R 155 (184)
..+..++.|+.+|.......++++-++..-.-=..||.++|++
T Consensus 18 ~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~~ 60 (67)
T PF01099_consen 18 EYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLEK 60 (67)
T ss_dssp HHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5567778887788888889999999988877777888877764
No 20
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=72.74 E-value=12 Score=23.16 Aligned_cols=42 Identities=29% Similarity=0.336 Sum_probs=32.0
Q ss_pred HHHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 029988 113 KLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLD 154 (184)
Q Consensus 113 ~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ni~~il~ 154 (184)
.+...++.||.+|.......++++-+++...-=..|+-++|+
T Consensus 18 ~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~ 59 (67)
T cd00633 18 EYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59 (67)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Confidence 556777888888888889999999998876666666666654
No 21
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=65.61 E-value=39 Score=23.71 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=9.4
Q ss_pred hhhHHHHHhHHHHHHHHHHHhh
Q 029988 157 EKIELLVDKTENLRSQVNLAVA 178 (184)
Q Consensus 157 e~L~~L~~kt~~L~~~s~~f~~ 178 (184)
++++....+++.|...|....+
T Consensus 27 ek~~s~~~~~e~lEsiAAKIIk 48 (121)
T PF03310_consen 27 EKLQSTEQDQENLESIAAKIIK 48 (121)
T ss_dssp HHHHTS--HHHHHHHHHHHHHH
T ss_pred HhhcCCCchHHHHHHHHHHHHH
Confidence 4444444445555554444443
No 22
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=65.53 E-value=34 Score=22.15 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhccc
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADCLF 182 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~~~ 182 (184)
+++..++..+.+--+-+.++=+++=+=.++-+.|.+.|+....+|+...++..+
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~ 63 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWW 63 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 456666666666666666665555555667788899999999999998877654
No 23
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=63.71 E-value=39 Score=22.18 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHH
Q 029988 134 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLA 176 (184)
Q Consensus 134 ~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f 176 (184)
+-+.|..++..|.+.+++- ...++.|.+.|+.|......+
T Consensus 6 vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~ 45 (92)
T PF03908_consen 6 VTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEY 45 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHH
Confidence 4445555555565555433 344555666666555544443
No 24
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=60.92 E-value=18 Score=29.68 Aligned_cols=51 Identities=24% Similarity=0.210 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHh---HHHHHHhhhhhH----------HHHHhHHHHHHHHHHHhh
Q 029988 128 ISKLAKVKAQVSEVKGVMMEN---IEKVLDRGEKIE----------LLVDKTENLRSQVNLAVA 178 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~n---i~~il~Rge~L~----------~L~~kt~~L~~~s~~f~~ 178 (184)
+|.+.+++.+|+.||.+|..+ |--+..|-|.|. .=..++..|++++..|.+
T Consensus 229 e~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~~qaAefq~ 292 (372)
T COG3524 229 EDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLSNQAAEFQR 292 (372)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHH
Confidence 467899999999999999222 333333333332 222334467777777654
No 25
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=59.24 E-value=88 Score=24.77 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHH
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLR 170 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~ 170 (184)
+|+..++.-|++..+...+--+.--.+...|+.+..|-+.|+
T Consensus 192 ~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~ 233 (264)
T PF06008_consen 192 AKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELS 233 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444444433333344444444444444444
No 26
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=57.73 E-value=62 Score=22.52 Aligned_cols=75 Identities=11% Similarity=0.168 Sum_probs=41.7
Q ss_pred CCCCeeEEEEcCeEEEEEee-CCEEEEEEeeCCCCcccHHHHHHHHHHHHHhhcCCCCcc-cccccccchHHHHHHHHhh
Q 029988 41 ATNNKFTYNCDGHTFNYLVE-NGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAA-TAVANSLNKEFGSKLKEHM 118 (184)
Q Consensus 41 ~~~~k~~~~~~~~~fh~l~~-~~~~~v~vt~~~~~~~~af~fL~~i~~~f~~~~~~~~~~-~~~~~~~~~~F~~~l~~~~ 118 (184)
.+.+...+..+++..|+... .|.-||.++++. +...+|+ |+.+...|.. |....+- +..-+-.+..|++.++++.
T Consensus 55 gssg~~~l~~~~f~m~I~qT~TG~kFV~~~~k~-t~na~~q-l~kiY~lYsd-YV~knPfys~EMPI~c~lFde~lkrm~ 131 (134)
T COG5122 55 GSSGRLVLYFRNFVMTIFQTTTGTKFVFVAEKR-TVNALFQ-LQKIYSLYSD-YVTKNPFYSPEMPIQCSLFDEHLKRMF 131 (134)
T ss_pred CCCceEEEEeccEEEEEEEecCCcEEEEEecCC-chhHHHH-HHHHHHHHHH-HhhcCCCCCcccceehhhhhHHHHHHh
Confidence 44567777788998887764 799999999543 2333444 5555555543 3321111 1011112456776666654
No 27
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.34 E-value=59 Score=26.18 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHH
Q 029988 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVN 174 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~ 174 (184)
.+.|.+|+.+|-||.+|+.+==--|=+-|+.+|.+++.-+..+.+..
T Consensus 179 ~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nve 225 (269)
T KOG0811|consen 179 EQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVE 225 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Confidence 35789999999999998888777777889999999988888776543
No 28
>PHA02604 rI.-1 hypothetical protein; Provisional
Probab=51.46 E-value=84 Score=22.17 Aligned_cols=80 Identities=15% Similarity=0.234 Sum_probs=44.0
Q ss_pred CCCCcccHHHH----HHHHHHHHHhhcCC---CCcccccccccchHHHHHHHHhhhhhcCChhHhHHHHHHHHHHHHHHH
Q 029988 71 ESAGRQIPIAF----LERVKEDFNKRYGG---GKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKG 143 (184)
Q Consensus 71 ~~~~~~~af~f----L~~i~~~f~~~~~~---~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~ 143 (184)
.+|.+..|+.+ |.++-+.|.+.|-. .....+.+.....++...|+++.+.- +.- -..-.+.+++-+||+++
T Consensus 37 ~SYa~HkA~d~~y~~~~dLiD~F~E~yiG~~Gr~Y~P~l~~~s~~d~~~~l~~~l~~a-~~i-~~~l~s~L~N~~DdI~~ 114 (126)
T PHA02604 37 KSYARHKAYEFFYEEMPDLIDKFAEQYIGISGRKYKPSLPSASELDTIAFLDELLQEA-EEI-YKELPSALQSTLDDITG 114 (126)
T ss_pred hhHhhhhHHHHHHHHhhHHHHHHHHHHHhhcccCcCcccccccccCHHHHHHHHHHHH-HHH-HHHhhHHHHHHHHHHHH
Confidence 57888888864 45566777776542 11111111111114555666655432 110 01223679999999999
Q ss_pred HHHHhHHHH
Q 029988 144 VMMENIEKV 152 (184)
Q Consensus 144 im~~ni~~i 152 (184)
...+.+-++
T Consensus 115 ~~~qt~YkL 123 (126)
T PHA02604 115 LCYQTKYKL 123 (126)
T ss_pred HHHHHHHHH
Confidence 888877653
No 29
>PHA03011 hypothetical protein; Provisional
Probab=50.93 E-value=76 Score=21.53 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=43.4
Q ss_pred HHHHHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHH
Q 029988 111 GSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 169 (184)
Q Consensus 111 ~~~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L 169 (184)
...+.++.-+||. -.|...-+..++.+...+..+|.|.+.-=...+|.|.+.-.+|
T Consensus 63 ~e~ldeL~~qYN~---L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 63 IEILDELIAQYNE---LLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 3467778888842 3578889999999999999999999987777777776655444
No 30
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=50.35 E-value=87 Score=22.01 Aligned_cols=49 Identities=16% Similarity=0.269 Sum_probs=33.1
Q ss_pred eEEEEcCe-EEEEEeeCCEEEEEEee---CCCCcccHHHHHHHHHHHHHhhcC
Q 029988 46 FTYNCDGH-TFNYLVENGFTYCVVAV---ESAGRQIPIAFLERVKEDFNKRYG 94 (184)
Q Consensus 46 ~~~~~~~~-~fh~l~~~~~~~v~vt~---~~~~~~~af~fL~~i~~~f~~~~~ 94 (184)
..+..+++ .|.|....++-|+.+++ ........-.|..+++..|.+..-
T Consensus 55 ~l~~~~~~~vygyvT~t~~Kfvl~~~~~~~~~~d~~ik~fF~~vh~~Y~~~~~ 107 (132)
T PF04628_consen 55 LLDPFEDYKVYGYVTNTGIKFVLVHDMSDNSIRDEDIKQFFKEVHELYVKALC 107 (132)
T ss_dssp EEEEETTEEEEEEETTT--EEEEEECGGG-S--HHHHHHHHHHHHHHHHHHHT
T ss_pred ceehhhhHHHHhhhccCceeEEEEEecccCCcchHHHHHHHHHHHHHHHHHcc
Confidence 45556666 68888788999999887 344555678899999998876543
No 31
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=48.09 E-value=96 Score=26.54 Aligned_cols=64 Identities=6% Similarity=0.051 Sum_probs=45.5
Q ss_pred HHHHHHhccCC-CCCCeeEEEEcCeEEEEEeeCCEEEEEEeeCCCCcccHHHHHHHHHHHHHhhc
Q 029988 30 SIASQCLQKLP-ATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRY 93 (184)
Q Consensus 30 ~~a~~vL~ki~-~~~~k~~~~~~~~~fh~l~~~~~~~v~vt~~~~~~~~af~fL~~i~~~f~~~~ 93 (184)
.+...++.-.. ..+.-.++..++..|.|+..+.+.+|||+..+-+...-..-|+-+........
T Consensus 39 g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~qL~~ly~qils~l 103 (415)
T PF03164_consen 39 GVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRKQLDYLYSQILSIL 103 (415)
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 44444544332 22444577889999999999999999999988887666677777776555443
No 32
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=44.55 E-value=60 Score=18.72 Aligned_cols=27 Identities=7% Similarity=0.276 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 029988 131 LAKVKAQVSEVKGVMMENIEKVLDRGE 157 (184)
Q Consensus 131 l~~~~~~l~~v~~im~~ni~~il~Rge 157 (184)
...|+.+|+.++.-|-.+++.+-.|=.
T Consensus 5 ~~~ie~dIe~tR~~La~tvd~L~~r~~ 31 (49)
T PF12277_consen 5 PDEIERDIERTRAELAETVDELAARLS 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 568999999999999999998877754
No 33
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=43.15 E-value=26 Score=28.41 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=20.5
Q ss_pred EEcCeEEEEEeeCCEEEEEEeeCCC
Q 029988 49 NCDGHTFNYLVENGFTYCVVAVESA 73 (184)
Q Consensus 49 ~~~~~~fh~l~~~~~~~v~vt~~~~ 73 (184)
.++|++|-|-..+++.+||+|.-.+
T Consensus 237 ~i~g~ly~y~~~~~v~i~c~chg~~ 261 (284)
T PF07897_consen 237 RIEGFLYKYGKGEEVRIVCVCHGSF 261 (284)
T ss_pred eeeEEEEEecCCCeEEEEEEecCCC
Confidence 3578999996678999999998765
No 34
>PF13228 DUF4037: Domain of unknown function (DUF4037)
Probab=41.66 E-value=1.1e+02 Score=20.59 Aligned_cols=58 Identities=26% Similarity=0.413 Sum_probs=42.4
Q ss_pred hHHHHHHHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHH
Q 029988 108 KEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLR 170 (184)
Q Consensus 108 ~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~ 170 (184)
+.|. .+++....| |.. =...+|..++..+.+-..-|+.+.++||+-+..-.-.++=+.
T Consensus 23 G~~~-~~R~~l~~Y---P~d-l~~~~ia~~~~~~~qa~~~n~~ra~~R~D~~~~~~~~~~fv~ 80 (100)
T PF13228_consen 23 GEFT-ALRERLAYY---PED-LRLNKIARNLMLLAQAGQYNLGRALKRGDILAANHAISEFVR 80 (100)
T ss_pred chHH-HHHHHHHHC---hHH-HHHHHHHHHHHHhhhhhHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4565 444444777 542 356778888888888788899999999999988777666443
No 35
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=40.85 E-value=1.4e+02 Score=21.53 Aligned_cols=51 Identities=14% Similarity=0.309 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhhhHHHHHhHHHHHHHHHHHhh
Q 029988 128 ISKLAKVKAQVSEVKGVMMENIEKVLDR-GEKIELLVDKTENLRSQVNLAVA 178 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~ni~~il~R-ge~L~~L~~kt~~L~~~s~~f~~ 178 (184)
..+|..++.+++++...|.+.|+.+=++ ...+..|..+.+.|...-..|..
T Consensus 9 l~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e 60 (149)
T PF07352_consen 9 LRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAE 60 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999998665 55678888888888877777653
No 36
>PHA01811 hypothetical protein
Probab=40.52 E-value=41 Score=20.71 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=15.2
Q ss_pred CCeeEEEEcCeEEEEEeeCC
Q 029988 43 NNKFTYNCDGHTFNYLVENG 62 (184)
Q Consensus 43 ~~k~~~~~~~~~fh~l~~~~ 62 (184)
+.-.+....||.+||+-+++
T Consensus 4 ddivtlrvkgyi~hyldd~n 23 (78)
T PHA01811 4 DDIVTLRVKGYILHYLDDDN 23 (78)
T ss_pred ccEEEEEEeeEEEEEEcCch
Confidence 34567888999999997643
No 37
>PHA03386 P10 fibrous body protein; Provisional
Probab=40.21 E-value=96 Score=20.70 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 029988 128 ISKLAKVKAQVSEVKG 143 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~ 143 (184)
.+|+..+|.+|++++.
T Consensus 18 d~KVdaLQ~qV~dv~~ 33 (94)
T PHA03386 18 DTKVDALQTQLNGLEE 33 (94)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 3678888888888864
No 38
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=40.07 E-value=82 Score=18.79 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=8.6
Q ss_pred hhhhhHHHHHhHHHHHHHH
Q 029988 155 RGEKIELLVDKTENLRSQV 173 (184)
Q Consensus 155 Rge~L~~L~~kt~~L~~~s 173 (184)
=|.|||+|+..-.+|..+|
T Consensus 33 M~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 33 MSSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHHCCHHHH-------
T ss_pred HHhhHHHHHHHHHHHHHhc
Confidence 3667777777777776655
No 39
>PLN03223 Polycystin cation channel protein; Provisional
Probab=38.55 E-value=1e+02 Score=30.83 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=38.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHH
Q 029988 127 EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRS 171 (184)
Q Consensus 127 ~~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~ 171 (184)
+.|.+.+-++.|-+++.-+.++=-++++|+++|.++++|-.+|..
T Consensus 1579 e~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~ 1623 (1634)
T PLN03223 1579 EVDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLEN 1623 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 346777788888889999999999999999999999999877754
No 40
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=36.85 E-value=30 Score=18.66 Aligned_cols=19 Identities=11% Similarity=0.361 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 029988 128 ISKLAKVKAQVSEVKGVMM 146 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~ 146 (184)
.|+|..|.+++.++-+||.
T Consensus 16 R~NI~~il~~m~~mpgim~ 34 (35)
T PF12579_consen 16 RDNILAILNDMNDMPGIMS 34 (35)
T ss_pred HHHHHHHHHHHHcchhhhc
Confidence 4677777777777777774
No 41
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=36.83 E-value=96 Score=18.66 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHH
Q 029988 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~ 172 (184)
.+.|.....-++++.++-.+.++.+-.-++.|.....|..++...
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~ 51 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSN 51 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999999999999888888777643
No 42
>PRK11546 zraP zinc resistance protein; Provisional
Probab=36.48 E-value=1.6e+02 Score=21.40 Aligned_cols=57 Identities=14% Similarity=0.283 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhcCCCCcccccccccchHHHHHHHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHH
Q 029988 80 AFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMM 146 (184)
Q Consensus 80 ~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~ 146 (184)
.-++.|.++|.....+ .+..+..+ ...|..++.. ++|. ..+|.++..||.+++.-|.
T Consensus 50 a~~q~I~~~f~~~t~~------LRqqL~aK-r~ELnALl~~--~~pD-~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 50 AAWQKIHNDFYAQTSA------LRQQLVSK-RYEYNALLTA--NPPD-SSKINAVAKEMENLRQSLD 106 (143)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHH-HHHHHHHHcC--CCCC-HHHHHHHHHHHHHHHHHHH
Confidence 3467777777654321 11111111 1244555433 3343 4679999999999887543
No 43
>PF11675 DUF3271: Protein of unknown function (DUF3271); InterPro: IPR021689 This family of proteins with unknown function appears to be restricted to Plasmodium.
Probab=36.23 E-value=1.3e+02 Score=23.76 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=35.7
Q ss_pred cceEEEEEEeCCeeEEeecCCCCCHHHHHHHHhccCCCCCCeeEEEEcCeEE
Q 029988 4 QSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTF 55 (184)
Q Consensus 4 m~i~ya~Iar~~~iLae~~~~~~~~~~~a~~vL~ki~~~~~k~~~~~~~~~f 55 (184)
.+|-|..|+.-++.+.........+-.++-.+|..-+. +.+..++.++|.|
T Consensus 29 k~i~y~sv~qpt~~f~~~~k~h~~YLdiIN~il~~eSe-N~Kyayeg~nYHw 79 (249)
T PF11675_consen 29 KPIAYISVAQPTATFEHDEKKHTKYLDIINDILRDESE-NIKYAYEGGNYHW 79 (249)
T ss_pred CceeEEeccCceEEEeecCccchhHHHHHHHHHhcccc-ccceeeeCCceEE
Confidence 46889999988776666555555677888888876553 3577777766644
No 44
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=36.08 E-value=94 Score=18.33 Aligned_cols=42 Identities=17% Similarity=0.333 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHH
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLR 170 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~ 170 (184)
+.+..|...|.++++++.+==+.|-+-|+-|+.|.+..+.-.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~ 45 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRAN 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHH
Confidence 567888888888888777666666667777777777666544
No 45
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=35.63 E-value=71 Score=20.52 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=35.3
Q ss_pred EEEEEeCCeeEEeecCCCCCHHHHHHHHhccCC--CCCCe-eEEEEcCeEEEEEe-eCCEEEEEEeeCCC
Q 029988 8 YSFVARGTVILAEYTEFTGNFTSIASQCLQKLP--ATNNK-FTYNCDGHTFNYLV-ENGFTYCVVAVESA 73 (184)
Q Consensus 8 ya~Iar~~~iLae~~~~~~~~~~~a~~vL~ki~--~~~~k-~~~~~~~~~fh~l~-~~~~~~v~vt~~~~ 73 (184)
-.|+++++.|-+++..+.++ +.|+..+ ...++ ++ ......|.-.. +||..|.|-+....
T Consensus 4 L~C~s~~skP~a~i~W~k~~------~~l~~~~~~~~~~~~~t-~~s~L~~~~~~~Ddg~~~~C~A~n~a 66 (80)
T cd05885 4 LTCLSPRSKPAATLRWYRDR------KELKGVISQQENGKTVS-VSNTIRFPVDRKDDGAILSCEASHPA 66 (80)
T ss_pred EEEeCCCccCCCeEEEEECC------EECCCCcccccCCceEE-EEEEEEEEeeeccCCcEEEEEEEChh
Confidence 47999999999999887666 2222222 12222 23 22334454444 47889999887643
No 46
>PHA02503 putative transcription regulator; Provisional
Probab=35.63 E-value=33 Score=19.96 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhccc
Q 029988 166 TENLRSQVNLAVADCLF 182 (184)
Q Consensus 166 t~~L~~~s~~f~~~~~~ 182 (184)
-+.|+.-|++|.+++|.
T Consensus 23 ke~l~~~s~~fl~~sli 39 (57)
T PHA02503 23 KEKLSVYSKDFLQNSLI 39 (57)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 37889999999999975
No 47
>PHA02557 22 prohead core protein; Provisional
Probab=34.45 E-value=2.5e+02 Score=22.66 Aligned_cols=96 Identities=19% Similarity=0.241 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCcccccccccchHHHHHHHHhhh-hhcCChh-HhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 029988 78 PIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQ-YCVDHPE-EISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (184)
Q Consensus 78 af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~-~yn~~~~-~~dkl~~~~~~l~~v~~im~~ni~~il~R 155 (184)
+-.||+.+-.+|....... ...++...++.+|-.-|+.+.. ++..=|. ..|-+..+..+|++-..-...-++...+.
T Consensus 89 vd~~l~~~~~eW~~ENk~A-v~~~IKaem~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l 167 (271)
T PHA02557 89 ADKYLDHLAKEWLAENKLA-VDRGIKAELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVAL 167 (271)
T ss_pred HHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999888888654321 1223444555566556666444 3323343 45789999999999988888888888888
Q ss_pred hhhhHH------HHHhHHHHHHHHH
Q 029988 156 GEKIEL------LVDKTENLRSQVN 174 (184)
Q Consensus 156 ge~L~~------L~~kt~~L~~~s~ 174 (184)
.+.++. |...|++|.+.-+
T Consensus 168 ~e~i~~~~r~~i~~e~t~gLtdsQk 192 (271)
T PHA02557 168 EEYINEVKREVILSEVTKDLTESQK 192 (271)
T ss_pred HHHHHHHHHHHHHHHHHcchhHHHH
Confidence 777765 4556777776544
No 48
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=34.30 E-value=57 Score=22.88 Aligned_cols=26 Identities=19% Similarity=0.472 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH
Q 029988 128 ISKLAKVKAQVSEVKGVMMENIEKVL 153 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~ni~~il 153 (184)
...+..++.+|.|+|+.+..-|+.++
T Consensus 95 ~E~veEL~~Dv~DlK~myr~Qi~~lv 120 (120)
T PF12325_consen 95 SEEVEELRADVQDLKEMYREQIDQLV 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35789999999999999999888763
No 49
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=33.83 E-value=68 Score=23.25 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=29.0
Q ss_pred HHHHHHHhhhhhc-CChhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 029988 110 FGSKLKEHMQYCV-DHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 159 (184)
Q Consensus 110 F~~~l~~~~~~yn-~~~~~~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L 159 (184)
|.+.++++...-+ --|. ...|.+++.+++.-+.-..+-+..+|++|+.|
T Consensus 32 fk~~l~~L~sTl~~i~P~-i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 32 FKSILKRLESTLESIIPI-IKEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred hhhHHHHHHHHHHHhhhH-HHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 4444444443321 1353 46677777777777666666777777777654
No 50
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=33.03 E-value=1.8e+02 Score=22.11 Aligned_cols=75 Identities=15% Similarity=0.281 Sum_probs=42.3
Q ss_pred CCcccHHHHHHHHHHHHHhhcCCCCcccccccccchHHHHHHHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHHhHHHH
Q 029988 73 AGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKV 152 (184)
Q Consensus 73 ~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ni~~i 152 (184)
|++..--..|.+.++.......+ .+..+=..-|+..-.+| .||+=.+.+-.-+.+..+.-.-+.+.++++
T Consensus 111 fD~~~L~~~L~ec~~~L~~lv~~---------HLT~KS~~Ri~~vF~~f-~~~efL~~lf~~~~~~~~~L~~i~~~Lnkl 180 (186)
T PF05527_consen 111 FDRNYLSKLLKECRDLLHQLVEP---------HLTPKSHGRIDHVFNFF-SDPEFLDALFSPDEEYRDHLGKICDGLNKL 180 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTT---------TS-HHHHHHHHHHHHHH-T-HHHHHHHTSG--GGHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH---------hCChhhHHHHHHHHHhh-CChHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 34444445555555555443332 11111123566666677 667666666666667777778889999999
Q ss_pred HHhhh
Q 029988 153 LDRGE 157 (184)
Q Consensus 153 l~Rge 157 (184)
|++|.
T Consensus 181 ld~g~ 185 (186)
T PF05527_consen 181 LDEGS 185 (186)
T ss_dssp HHTT-
T ss_pred HhCCC
Confidence 99995
No 51
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=31.15 E-value=2.2e+02 Score=22.03 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCcccccccccchHHHHHHHHhhhhhcCCh---------hHhHHHHHHHHHHHHHHHHHHHh
Q 029988 78 PIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHP---------EEISKLAKVKAQVSEVKGVMMEN 148 (184)
Q Consensus 78 af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~---------~~~dkl~~~~~~l~~v~~im~~n 148 (184)
+..||++|-+.......... . -...+..|...|.++-.++..++ ....+.+++-++|++-+.+|.+|
T Consensus 14 t~~~ik~liK~c~~li~A~k--~--~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~ 89 (207)
T cd07634 14 TNKFIKELIKDGSLLIGALR--N--LSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQN 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677776655443221100 0 01123456666666554443333 13345677777777777777777
Q ss_pred HHHHHH
Q 029988 149 IEKVLD 154 (184)
Q Consensus 149 i~~il~ 154 (184)
++.++-
T Consensus 90 ~~~~l~ 95 (207)
T cd07634 90 ANDVLI 95 (207)
T ss_pred HHHHHH
Confidence 765553
No 52
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.57 E-value=1.7e+02 Score=24.83 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=31.6
Q ss_pred CeEEEEEeeCCEEEEEEeeCCCCcccHHHHHHHHHHHHHhhcC
Q 029988 52 GHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYG 94 (184)
Q Consensus 52 ~~~fh~l~~~~~~~v~vt~~~~~~~~af~fL~~i~~~f~~~~~ 94 (184)
.|.+.-...+++.+|+++.-+.|-=.++.||..|.+-|..-++
T Consensus 54 ~hylfsv~~~~i~~~~~st~e~pPL~~iefL~rv~dv~~eyFg 96 (418)
T KOG2740|consen 54 HHYLFSVYRDLIFFCAVSTVETPPLMVIEFLHRVVDVLLEYFG 96 (418)
T ss_pred ceeeeeeeccCcEEEEEEeccCCChhHHHHHHHHHHHHHHHhc
Confidence 3333333357777777777788877899999999998876655
No 53
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=30.46 E-value=1.1e+02 Score=17.48 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKV 152 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~i 152 (184)
..+..+.+-+.++|+.|.+.+..+
T Consensus 8 ~ql~~l~~~l~elk~~l~~Q~kE~ 31 (45)
T PF11598_consen 8 KQLSELNQMLQELKELLRQQIKET 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777888888888877654
No 54
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.34 E-value=2.5e+02 Score=21.57 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhh
Q 029988 135 KAQVSEVKGVMMENIEKVLDRGE 157 (184)
Q Consensus 135 ~~~l~~v~~im~~ni~~il~Rge 157 (184)
.+.++-+.++|.++||..|+..|
T Consensus 132 se~Mdm~~Emm~daIDdal~~~e 154 (224)
T KOG3230|consen 132 SEIMDMKEEMMDDAIDDALGDDE 154 (224)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc
Confidence 34567788999999999996443
No 55
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=30.33 E-value=1.9e+02 Score=19.98 Aligned_cols=46 Identities=20% Similarity=0.365 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHh----hhhhHHHHHhHHHHHHHHHH
Q 029988 130 KLAKVKAQVSEVKGVMMENIEKVLDR----GEKIELLVDKTENLRSQVNL 175 (184)
Q Consensus 130 kl~~~~~~l~~v~~im~~ni~~il~R----ge~L~~L~~kt~~L~~~s~~ 175 (184)
++..++.+|+++++=|.+.-|+.=.- ..++|+|+++...|.+....
T Consensus 9 q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~ 58 (112)
T PF07439_consen 9 QLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVST 58 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544443221 23566666666666544433
No 56
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=29.60 E-value=2.4e+02 Score=21.14 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=31.3
Q ss_pred HHHHHhhhhhc---CChhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHH
Q 029988 112 SKLKEHMQYCV---DHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRS 171 (184)
Q Consensus 112 ~~l~~~~~~yn---~~~~~~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~ 171 (184)
|.+.++++.|. ..|...+.+.+..++.+++-+.+.+++++-+++ .+.+...+|+.
T Consensus 136 p~~~~l~~kY~~l~~~~~~~~~~~~~l~e~~~~L~~l~~~f~~~~~~-----l~~~d~~dl~~ 193 (199)
T PF10112_consen 136 PTAVKLLEKYAELESQPVKSEEIKQSLEEIEETLDTLNQAFEKDLDK-----LLEDDIMDLDT 193 (199)
T ss_pred hHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHH
Confidence 55666666662 223334556666666666666677777766654 34444444443
No 57
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=29.22 E-value=1.2e+02 Score=17.58 Aligned_cols=49 Identities=14% Similarity=0.357 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHH
Q 029988 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLA 176 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f 176 (184)
.+.+..+...+.+++++..+=-..+-+-|+.|+.+....+......+.-
T Consensus 11 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~ 59 (66)
T smart00397 11 DEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKA 59 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3578889999999988877666666667888988888877766554443
No 58
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=28.27 E-value=1.5e+02 Score=18.33 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=8.9
Q ss_pred hhhhHHHHHhHHHHHHHH
Q 029988 156 GEKIELLVDKTENLRSQV 173 (184)
Q Consensus 156 ge~L~~L~~kt~~L~~~s 173 (184)
+.++|+|+..-.+|-.++
T Consensus 47 ~~riDDLEKnIaDLm~qa 64 (73)
T KOG4117|consen 47 SSRIDDLEKNIADLMTQA 64 (73)
T ss_pred hhhhHHHHHHHHHHHHHc
Confidence 344555555555554443
No 59
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=28.11 E-value=1.2e+02 Score=17.24 Aligned_cols=46 Identities=22% Similarity=0.428 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHH
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVN 174 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~ 174 (184)
+.+..+...+.+++++..+==..+-+-|+.|+.+....+.....-+
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~ 51 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVK 51 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888887664444444555777777777666554433
No 60
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=26.95 E-value=2.3e+02 Score=20.00 Aligned_cols=81 Identities=17% Similarity=0.307 Sum_probs=42.4
Q ss_pred CeEEEEEeeCCE--------EEEEEeeCCCCcc-cHHHHHHHHHHHHHhhcCCCCcccccccccchHHHH-HHHHhhhhh
Q 029988 52 GHTFNYLVENGF--------TYCVVAVESAGRQ-IPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGS-KLKEHMQYC 121 (184)
Q Consensus 52 ~~~fh~l~~~~~--------~~v~vt~~~~~~~-~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~F~~-~l~~~~~~y 121 (184)
.+++|....+|+ .|++ ....-|++ .+-.+++.|-..+ +. -..+ ++.|.+ .|+++.+.+
T Consensus 27 Q~Slhi~~~~g~~~~~~~h~efL~-~~~~DPr~~~~~~L~~~i~~~~----g~-----ivvy--N~sfE~~rL~ela~~~ 94 (130)
T PF11074_consen 27 QFSLHITDNDGIIYKELEHVEFLA-DPGEDPRRELIEALIKAIGSIY----GS-----IVVY--NKSFEKTRLKELAELF 94 (130)
T ss_pred EEEEEEEcCCCcccCchhhHHHhc-cCCCCchHHHHHHHHHHhhhhc----Ce-----EEEe--chHHHHHHHHHHHHHh
Confidence 477888877773 3444 22233433 3444555444332 21 1112 344654 556665554
Q ss_pred cCChhHhHHHHHHHHHHHHHHHHHHH
Q 029988 122 VDHPEEISKLAKVKAQVSEVKGVMME 147 (184)
Q Consensus 122 n~~~~~~dkl~~~~~~l~~v~~im~~ 147 (184)
|.-.+++..+.+.+-|.......
T Consensus 95 ---p~~~~~l~~I~~r~vDL~~~f~~ 117 (130)
T PF11074_consen 95 ---PDYAEKLNSIIERTVDLLDPFKN 117 (130)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44456777777777776665544
No 61
>PHA00212 putative transcription regulator
Probab=26.52 E-value=61 Score=19.26 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhccc
Q 029988 167 ENLRSQVNLAVADCLF 182 (184)
Q Consensus 167 ~~L~~~s~~f~~~~~~ 182 (184)
.-|+..|++|.+++|.
T Consensus 27 ~ll~~~s~~f~~~~l~ 42 (63)
T PHA00212 27 QLLKDFSVQFIKDSLL 42 (63)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 3458999999999875
No 62
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=26.29 E-value=2.8e+02 Score=21.47 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhhh-cCChhHhHHHHHHHHHHHHHHHHHHHhHHHH
Q 029988 109 EFGSKLKEHMQYC-VDHPEEISKLAKVKAQVSEVKGVMMENIEKV 152 (184)
Q Consensus 109 ~F~~~l~~~~~~y-n~~~~~~dkl~~~~~~l~~v~~im~~ni~~i 152 (184)
.|-..+..+-.-. ++||-....+.++++.|+++++.|.+-++.+
T Consensus 41 ~~~~~~~~i~~~a~~DdPyAD~~L~~iEe~i~~~~~~l~~~~~~l 85 (217)
T PF08900_consen 41 GFASRLNRIWRDARQDDPYADWWLLRIEEKINEARQELQELIARL 85 (217)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544555444322 4688877789999999999999888776654
No 63
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=26.02 E-value=1.3e+02 Score=16.76 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=16.2
Q ss_pred HHHHHhHHHHHHhhhhhHHHHHhHH
Q 029988 143 GVMMENIEKVLDRGEKIELLVDKTE 167 (184)
Q Consensus 143 ~im~~ni~~il~Rge~L~~L~~kt~ 167 (184)
+.+.+|-..+|...+.|+.+.++-+
T Consensus 10 eLV~eNK~ell~d~~~me~Ieerie 34 (40)
T PF13040_consen 10 ELVRENKQELLNDKEAMEKIEERIE 34 (40)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 4556667777777777766666544
No 64
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=25.86 E-value=1.9e+02 Score=18.55 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHH
Q 029988 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRS 171 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~ 171 (184)
.+|+..++.+|++++.-+ ..+=+=.+|||.+...-++|..
T Consensus 17 d~KVdaLq~~V~~l~~~~----~~v~~l~~klDa~~~~l~~l~~ 56 (75)
T PF05531_consen 17 DDKVDALQTQVDDLESNL----PDVTELNKKLDAQSAQLTTLNT 56 (75)
T ss_pred HHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHHHH
Confidence 478888888888876654 2222223344444444444443
No 65
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=24.64 E-value=71 Score=20.81 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=15.5
Q ss_pred HHHHHHHHHhHHHHHHhh
Q 029988 139 SEVKGVMMENIEKVLDRG 156 (184)
Q Consensus 139 ~~v~~im~~ni~~il~Rg 156 (184)
.||.++|.+||..+|..-
T Consensus 24 ~ev~e~m~~~v~~llG~l 41 (86)
T PF05542_consen 24 PEVLEAMKQHVSGLLGNL 41 (86)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 578999999999998765
No 66
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=24.63 E-value=1.3e+02 Score=16.24 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=12.3
Q ss_pred HHHHHHhHHHHHHhhhh
Q 029988 142 KGVMMENIEKVLDRGEK 158 (184)
Q Consensus 142 ~~im~~ni~~il~Rge~ 158 (184)
++-....||..|++|++
T Consensus 11 ~~~L~~~ID~ALd~~D~ 27 (37)
T PF08858_consen 11 KEQLLELIDEALDNRDK 27 (37)
T ss_dssp HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHcCCH
Confidence 45566789999998875
No 67
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=24.57 E-value=1.4e+02 Score=22.06 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=23.4
Q ss_pred HHHHHHHhHHHHHHhhhhhHHHHHhHHHHHH
Q 029988 141 VKGVMMENIEKVLDRGEKIELLVDKTENLRS 171 (184)
Q Consensus 141 v~~im~~ni~~il~Rge~L~~L~~kt~~L~~ 171 (184)
.++.|...-..-|=|.|-||++++|...|..
T Consensus 143 ~QEd~E~sAReeL~REELiEEIEQkVGGLRE 173 (180)
T PLN00180 143 RQEDIEESARAELWREELIEEIEQKVGGLRE 173 (180)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3344445566778899999999999998874
No 68
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.13 E-value=3.3e+02 Score=23.96 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHH---HhHHHHHHhhhhhHHHHHhHHHHHHHH
Q 029988 128 ISKLAKVKAQVSEVKGVMM---ENIEKVLDRGEKIELLVDKTENLRSQV 173 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~---~ni~~il~Rge~L~~L~~kt~~L~~~s 173 (184)
+.+..+++++|++.+.-|. ...+ +..++|+.|.+.-+.|+.+-
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~---dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRG---DDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888875554 3333 34667777777777777664
No 69
>KOG2866 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.09 E-value=3.8e+02 Score=22.48 Aligned_cols=44 Identities=11% Similarity=0.208 Sum_probs=35.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHH
Q 029988 127 EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLR 170 (184)
Q Consensus 127 ~~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~ 170 (184)
..++.+.|-+.++...+.|..-++.+++.+..|+....-.+...
T Consensus 87 ~~~~~neI~~~v~~l~qe~~~~~e~i~da~~~l~~a~~~is~~~ 130 (349)
T KOG2866|consen 87 DVDKENEILNEVENLHQEVRLPREDIADAENLLDLAASDISKAK 130 (349)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHH
Confidence 35677889999999999999999999999998887766554443
No 70
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=23.95 E-value=2e+02 Score=18.16 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhcc
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADCL 181 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~~ 181 (184)
..+.+|..++.++.+.|.+.=.=+|- .+|.+-.+-.++.+-|..||=.|.
T Consensus 17 ~~L~~I~~~~~~i~~~ld~~~~ClL~---e~e~i~~~f~~~q~~AssyYLq~Y 66 (70)
T PF10372_consen 17 QYLEQIEEEISQIIQTLDEDDCCLLC---EFEEIREKFLDIQTLASSYYLQCY 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHTT-TT--GGG---GHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCceech---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666544333332 467888888888888999987664
No 71
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=23.74 E-value=81 Score=25.65 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 029988 132 AKVKAQVSEVKGVMM 146 (184)
Q Consensus 132 ~~~~~~l~~v~~im~ 146 (184)
.+++.++-+.-+-|.
T Consensus 106 ~klEKel~e~~~~~f 120 (295)
T TIGR01478 106 STIEKELLEKYEEMF 120 (295)
T ss_pred hHHHHHHHHHHHHHh
Confidence 444444444444443
No 72
>PTZ00478 Sec superfamily; Provisional
Probab=23.10 E-value=1.4e+02 Score=19.49 Aligned_cols=30 Identities=10% Similarity=0.339 Sum_probs=20.0
Q ss_pred HHHhhhhhHHHHHhHHHHHHHHHHHhhhcc
Q 029988 152 VLDRGEKIELLVDKTENLRSQVNLAVADCL 181 (184)
Q Consensus 152 il~Rge~L~~L~~kt~~L~~~s~~f~~~~~ 181 (184)
+.+..+.++.+.+...+.-.+|.+|.++|-
T Consensus 9 ~~~~m~~~~~v~~~~~eF~kds~r~vkrct 38 (81)
T PTZ00478 9 LTDKSNPVGYVVSGVQEFANDSRRLIRKCT 38 (81)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455566777777777777777777763
No 73
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=22.70 E-value=4e+02 Score=21.24 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
+.+.....+|.++-+-.....+-+.++...|+.|...+..++.....|..+.
T Consensus 66 ~~~a~aapdL~~~l~~~~~~s~tL~~~~~~L~~lL~~~~~~a~~~~~~l~~n 117 (267)
T PF11887_consen 66 DTYADAAPDLLDALDNLTTTSRTLVDQRQQLDALLLSATGLADTGTDFLADN 117 (267)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555566666666677888999999999999999999999988764
No 74
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.61 E-value=3.9e+02 Score=22.21 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
+.+..-.++++.+.+-....+..+-++.+.|+.+.+....+.+....+..+.
T Consensus 211 ~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ll~~~ 262 (359)
T COG1463 211 DSLAAASDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVNDLLAEN 262 (359)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555666666666667777788888888888888888888888887654
No 75
>PTZ00370 STEVOR; Provisional
Probab=21.38 E-value=99 Score=25.19 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 029988 130 KLAKVKAQVSEVKGVMMENIEK 151 (184)
Q Consensus 130 kl~~~~~~l~~v~~im~~ni~~ 151 (184)
...+++.++-+.-+-|.-+=..
T Consensus 103 ~k~klEKel~e~~ee~fg~~~~ 124 (296)
T PTZ00370 103 PMSTLEKELLETYEEMFGDESD 124 (296)
T ss_pred hhHHHHHHHHHHHHHHhcCccc
Confidence 3555666655555555544443
No 76
>PF04761 Phage_Treg: Lactococcus bacteriophage putative transcription regulator; InterPro: IPR006848 This family represents a number of putative transcription repressor proteins found in several Lactococcus bacteriophages. Horizontal transfer may account for the presence of similar proteins in Lactococcus species [].
Probab=21.11 E-value=80 Score=18.46 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=15.9
Q ss_pred HHHHhHHHHHHHHHHHhhhccc
Q 029988 161 LLVDKTENLRSQVNLAVADCLF 182 (184)
Q Consensus 161 ~L~~kt~~L~~~s~~f~~~~~~ 182 (184)
..+=--+.|+--|++|.+++|.
T Consensus 18 sve~yk~kl~~~s~~flq~sli 39 (57)
T PF04761_consen 18 SVEFYKEKLSVDSKDFLQNSLI 39 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHhhH
Confidence 3344456788889999999874
No 77
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=21.05 E-value=91 Score=20.86 Aligned_cols=28 Identities=32% Similarity=0.588 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhHH
Q 029988 134 VKAQVSEVKGVMMENIEKVLDRGEKIEL 161 (184)
Q Consensus 134 ~~~~l~~v~~im~~ni~~il~Rge~L~~ 161 (184)
-+.+.+++-+.+.+.|...|.+|++++.
T Consensus 18 ~k~~a~~~v~~~~~~i~~aL~~G~~V~l 45 (94)
T COG0776 18 SKKDAEEAVDAFLEEITEALAKGERVEL 45 (94)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3457888888999999999999998753
No 78
>PF03555 Flu_C_NS2: Influenza C non-structural protein (NS2); InterPro: IPR005188 The influenza C virus genome consists of seven single-stranded RNA segments. The shortest RNA segment encodes a 286 amino acid non-structural protein NS1 IPR005187 from INTERPRO as well as the NS2 protein. The NS2 protein is only about 60 amino acids in length and of unknown function.
Probab=20.72 E-value=1.1e+02 Score=17.51 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=21.7
Q ss_pred HHHHHhHHHHHHhhhhhHHHHH-hHHHHHHHHH
Q 029988 143 GVMMENIEKVLDRGEKIELLVD-KTENLRSQVN 174 (184)
Q Consensus 143 ~im~~ni~~il~Rge~L~~L~~-kt~~L~~~s~ 174 (184)
+.|.=--.++|+|+|.||.-.+ ..+.+..+.+
T Consensus 5 nlmafvatkmlerqedldtctemqvekmkastk 37 (57)
T PF03555_consen 5 NLMAFVATKMLERQEDLDTCTEMQVEKMKASTK 37 (57)
T ss_pred hHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhHH
Confidence 4566667899999999987543 4455555544
No 79
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=20.67 E-value=3.4e+02 Score=19.73 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=9.7
Q ss_pred HHHHHhHHHHHHhhhhhHHH
Q 029988 143 GVMMENIEKVLDRGEKIELL 162 (184)
Q Consensus 143 ~im~~ni~~il~Rge~L~~L 162 (184)
.-+++.=+.+|+...+|+.+
T Consensus 45 ~~l~~~ce~Ll~eq~~L~~~ 64 (157)
T PF04136_consen 45 NSLHEACEQLLEEQTRLEEL 64 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544443
No 80
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=20.43 E-value=3.1e+02 Score=19.45 Aligned_cols=23 Identities=13% Similarity=0.390 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHH
Q 029988 128 ISKLAKVKAQVSEVKGVMMENIE 150 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~ni~ 150 (184)
..++.++..+|..++.++.+++.
T Consensus 86 L~kv~els~~L~~~~~lL~~~v~ 108 (131)
T PF10158_consen 86 LEKVNELSQQLSRCQSLLNQTVP 108 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777776666655543
No 81
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.14 E-value=3.5e+02 Score=24.24 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhh
Q 029988 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVAD 179 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~ 179 (184)
.+++...++.+++++.-=.+|..++.++-+.++.|....+......+.|..+
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~ 241 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKND 241 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999888444667788899999998888888877777776554
Done!