Query 029988
Match_columns 184
No_of_seqs 121 out of 883
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 10:36:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 5.8E-56 2E-60 335.7 3.1 176 3-180 1-176 (189)
2 2nut_C Vesicle-trafficking pro 100.0 4.1E-48 1.4E-52 294.7 11.8 173 5-180 2-185 (196)
3 3kyq_A YKT6, synaptobrevin hom 100.0 5.5E-40 1.9E-44 249.3 4.7 172 4-180 2-189 (199)
4 4afi_A AP-3 complex subunit de 100.0 6E-36 2E-40 222.1 14.9 120 3-123 53-172 (173)
5 2vx8_A Nucleoporin-like protei 100.0 1.3E-31 4.5E-36 198.1 13.5 121 3-124 43-163 (169)
6 3bw6_A Synaptobrevin homolog Y 99.9 4.6E-26 1.6E-30 164.8 12.9 124 3-130 4-144 (144)
7 1gl2_A Endobrevin; membrane pr 99.8 5.5E-20 1.9E-24 115.0 6.8 57 124-180 4-60 (65)
8 3b5n_A Synaptobrevin homolog 1 99.8 4.8E-19 1.7E-23 109.3 7.7 52 129-180 2-53 (61)
9 1n7s_A Vesicle-associated memb 99.8 4.5E-19 1.5E-23 110.3 7.5 53 128-180 3-55 (63)
10 2nps_A VAMP-4, vesicle-associa 99.8 1.7E-19 5.9E-24 115.6 4.3 57 124-180 3-59 (74)
11 3hd7_A Vesicle-associated memb 99.7 5.5E-18 1.9E-22 112.7 7.6 53 128-180 4-56 (91)
12 1l4a_A Synaptobrevin; snare, s 99.7 6.5E-19 2.2E-23 114.5 2.4 56 125-180 11-66 (80)
13 1sfc_A VAMP 2, protein (synapt 99.7 7E-18 2.4E-22 113.1 7.2 54 127-180 28-81 (96)
14 1urq_A M-tomosyn isoform; tran 99.6 3.1E-16 1.1E-20 96.6 6.6 52 129-180 4-55 (63)
15 2kog_A Vesicle-associated memb 99.6 1.9E-17 6.4E-22 115.1 -4.1 54 127-180 31-84 (119)
16 3zym_A Phosphatidylinositol-bi 98.5 4.2E-08 1.5E-12 78.8 3.2 54 106-159 243-310 (310)
17 3fie_C Fragment of vesicle-ass 98.4 4.7E-11 1.6E-15 65.9 -10.9 30 128-157 8-37 (38)
18 2fh5_A Signal recognition part 98.0 7E-06 2.4E-10 60.7 4.7 90 4-95 10-105 (185)
19 2fz0_A R-snare NYV1P, V-snare 96.0 0.013 4.4E-07 40.6 5.1 57 31-87 50-114 (149)
20 3tjz_C Coatomer subunit zeta-1 87.9 5.4 0.00019 28.1 10.2 87 6-93 13-105 (153)
21 2vgl_S AP-2 complex subunit si 86.1 6.5 0.00022 27.1 9.7 49 46-94 48-96 (142)
22 1t3j_A Mitofusin 1; coiled coi 85.3 5.4 0.00019 25.9 7.2 48 130-177 37-84 (96)
23 1w63_M Adaptor-related protein 83.5 10 0.00035 31.1 10.1 48 47-94 49-96 (423)
24 2vgl_M AP-2 complex subunit MU 83.2 16 0.00056 30.0 11.3 49 46-94 46-94 (435)
25 1w63_Q Adapter-related protein 82.4 11 0.00036 26.6 11.6 48 47-94 49-96 (158)
26 3cue_C Transport protein parti 79.5 13 0.00045 26.2 8.2 87 33-121 52-156 (159)
27 1ccd_A Clara cell 17 KD protei 79.5 4 0.00014 25.3 4.8 43 113-155 22-64 (77)
28 2j3t_C Trafficking protein par 78.1 15 0.0005 25.5 12.6 76 44-121 60-137 (145)
29 2j3t_D Trafficking protein par 78.1 19 0.00066 26.9 10.5 85 36-122 122-210 (219)
30 3cue_A Transport protein parti 77.9 16 0.00053 27.4 8.4 73 46-121 120-218 (219)
31 1utg_A Uteroglobin; steroid bi 77.3 3.6 0.00012 25.0 4.0 44 113-156 20-63 (70)
32 2j3w_A Sedlin, trafficking pro 77.3 15 0.00052 25.3 13.1 75 45-121 64-139 (142)
33 1txp_A HnRNP C, heterogeneous 74.3 3 0.0001 20.4 2.4 24 133-160 3-26 (28)
34 4a4y_A Protein MXIG; protein b 71.3 9.8 0.00034 24.9 5.2 43 5-59 85-127 (146)
35 2nps_B Syntaxin 13, vesicle-as 69.0 16 0.00055 21.9 7.3 44 129-172 6-49 (71)
36 3b5n_B Protein SSO1; snare com 65.4 19 0.00066 21.5 7.3 44 129-172 10-53 (69)
37 1jth_B Syntaxin 1A; coiled-coi 62.8 23 0.00079 21.5 7.3 43 129-171 10-52 (77)
38 1n7s_B Syntaxin 1A; neuronal s 62.3 22 0.00075 21.1 7.3 44 129-172 12-55 (68)
39 1utr_A Uteroglobin; clara cell 62.3 6.9 0.00024 25.3 3.1 42 114-155 42-83 (96)
40 1gl2_B Syntaxin 7; membrane pr 61.5 22 0.00076 20.9 7.3 45 129-173 9-53 (65)
41 3hd7_B Syntaxin-1A; membrane p 59.9 34 0.0011 22.4 7.3 42 129-170 21-62 (109)
42 1zkr_A Major allergen I polype 57.4 19 0.00065 25.3 4.8 43 113-155 21-64 (153)
43 1nhl_A Synaptosomal-associated 56.0 26 0.00088 19.9 6.8 40 134-173 5-44 (54)
44 2ygg_A Sodium/hydrogen exchang 52.3 18 0.00061 21.9 3.5 22 135-156 6-27 (70)
45 3nmd_A CGMP dependent protein 48.6 44 0.0015 20.3 6.3 43 138-180 21-63 (72)
46 1sfc_B Protein (syntaxin 1A), 47.9 47 0.0016 20.5 7.3 43 129-171 21-63 (83)
47 3lcn_C MRNA transport factor G 39.2 35 0.0012 16.6 3.3 21 128-148 5-25 (29)
48 1n7s_C SNAP-25A; neuronal snar 38.8 67 0.0023 19.7 7.7 46 128-173 22-67 (79)
49 3t97_C Nuclear pore glycoprote 34.3 56 0.0019 19.3 3.7 19 152-170 7-25 (64)
50 1l4a_C S-SNAP25 fusion protein 30.8 98 0.0034 19.2 7.6 59 113-173 13-71 (83)
51 1y4m_A HERV-FRD_6P24.1 proviru 27.2 85 0.0029 17.8 3.4 21 128-148 6-26 (53)
52 2xus_A Breast cancer metastasi 25.3 39 0.0013 18.9 1.7 16 128-143 31-46 (49)
53 1sfc_A VAMP 2, protein (synapt 24.7 1.4E+02 0.0047 19.0 7.1 55 129-183 37-91 (96)
54 2yko_A LINE-1 ORF1P; RNA-bindi 24.7 2.1E+02 0.0072 21.5 6.2 38 129-166 13-50 (233)
55 2pjw_V Vacuolar protein sortin 24.0 1.4E+02 0.0049 18.8 8.7 43 128-170 32-74 (91)
56 1mof_A Moloney murine leukemia 23.3 1.1E+02 0.0038 17.5 3.4 21 128-148 8-28 (55)
57 1urq_A M-tomosyn isoform; tran 22.8 1.2E+02 0.0042 17.6 7.9 51 129-179 11-61 (63)
58 1l4a_A Synaptobrevin; snare, s 21.1 1.5E+02 0.0051 18.0 4.4 54 130-183 23-76 (80)
59 2kfe_A Meucin-24; alpha-helix, 21.0 77 0.0026 15.1 2.1 17 130-146 6-22 (26)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=5.8e-56 Score=335.66 Aligned_cols=176 Identities=35% Similarity=0.585 Sum_probs=150.0
Q ss_pred CcceEEEEEEeCCeeEEeecCCCCCHHHHHHHHhccCCCCCCeeEEEEcCeEEEEEeeCCEEEEEEeeCCCCcccHHHHH
Q 029988 3 QQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFL 82 (184)
Q Consensus 3 ~m~i~ya~Iar~~~iLae~~~~~~~~~~~a~~vL~ki~~~~~k~~~~~~~~~fh~l~~~~~~~v~vt~~~~~~~~af~fL 82 (184)
.|+|+|+|||||++|||||+..+|||.++++.+|+++|+.++++++++|+|.|||++++|++|+|||+.+||+++||.||
T Consensus 1 ~M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 1 SMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CCSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 49999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcccccccccchHHHHHHHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHH
Q 029988 83 ERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELL 162 (184)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L 162 (184)
++|+++|...|+.. +.++.+++.+.+|.+.|+++|++| +||...|++.+++++|+||++||.+||+++|+|||+||.|
T Consensus 81 ~~i~~eF~~~~~~~-~~~~~~~~~~~~f~~~l~~~~~~y-~d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L 158 (189)
T 4b93_A 81 NEVKKRFQTTYGSR-AQTALPYAMNSEFSSVLAAQLKHH-SENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELL 158 (189)
T ss_dssp HHHHHHHHHHHGGG-GGTCCTTTTHHHHHHHHHHHHHHH-HCC-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCC
T ss_pred HHHHHHHHhhcccc-ccccCCccccchhhHHHHHHHHhh-hcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999864 556678888899999999999999 5666789999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhhhc
Q 029988 163 VDKTENLRSQVNLAVADC 180 (184)
Q Consensus 163 ~~kt~~L~~~s~~f~~~~ 180 (184)
++||++|+.+|+.|++.+
T Consensus 159 ~~ks~~L~~~s~~f~~~a 176 (189)
T 4b93_A 159 IDKTENLVDSSVTFKTTS 176 (189)
T ss_dssp EETTCC------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999876
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=4.1e-48 Score=294.67 Aligned_cols=173 Identities=25% Similarity=0.426 Sum_probs=114.5
Q ss_pred ceEEEEEEeC--CeeEEeecCCC---CC----HHHHHHHHhccCCC-CCCeeEEEEcCeEEEEEeeCCEEEEEEeeCCCC
Q 029988 5 SLIYSFVARG--TVILAEYTEFT---GN----FTSIASQCLQKLPA-TNNKFTYNCDGHTFNYLVENGFTYCVVAVESAG 74 (184)
Q Consensus 5 ~i~ya~Iar~--~~iLae~~~~~---~~----~~~~a~~vL~ki~~-~~~k~~~~~~~~~fh~l~~~~~~~v~vt~~~~~ 74 (184)
.|+|+||||+ ++|||++++.+ |+ |.++++.+++++|+ .++++++++++|.|||+.++|++|+|||+++||
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp 81 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP 81 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcc
Confidence 3899999999 89999998743 44 88999999999986 788999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCccc-ccccccchHHHHHHHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 029988 75 RQIPIAFLERVKEDFNKRYGGGKAAT-AVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVL 153 (184)
Q Consensus 75 ~~~af~fL~~i~~~f~~~~~~~~~~~-~~~~~~~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ni~~il 153 (184)
+++||.||++|+++|...|+.. +.+ +.++++ .+|++.|+++|++| +||.+.|++.+++.+|+||++||.+||+++|
T Consensus 82 ~r~af~fL~~i~~~F~~~~~~~-~~~~~~~~~~-~~f~~~l~~~~~~y-~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl 158 (196)
T 2nut_C 82 KKLAFAYLEDLHSEFDEQHGKK-VPTVSRPYSF-IEFDTFIQKTKKLY-IDSRARRNLGSINTELQDVQRIMVANIEEVL 158 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT-TTTCCSTTTT-GGGHHHHHHHHTTT-SCCC-----------------CCEEEHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhccch-hccccCCCch-HHHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999864 433 345554 59999999999999 6787789999999999999999999999999
Q ss_pred HhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 154 DRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 154 ~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
+|||+||.|++||++|+.+|+.|++.+
T Consensus 159 ~Rge~l~~L~~ks~~L~~~s~~f~~~a 185 (196)
T 2nut_C 159 QRGEALSALDSKANNLSSLSKKYRQDA 185 (196)
T ss_dssp ---------------------------
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876
No 3
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=5.5e-40 Score=249.31 Aligned_cols=172 Identities=20% Similarity=0.305 Sum_probs=144.8
Q ss_pred cceEEEEEEeC----CeeEEeecCCC----------CCHHH-HHHHHhccCCCCCCeeEEEEcCeEEE-EEeeCCEEEEE
Q 029988 4 QSLIYSFVARG----TVILAEYTEFT----------GNFTS-IASQCLQKLPATNNKFTYNCDGHTFN-YLVENGFTYCV 67 (184)
Q Consensus 4 m~i~ya~Iar~----~~iLae~~~~~----------~~~~~-~a~~vL~ki~~~~~k~~~~~~~~~fh-~l~~~~~~~v~ 67 (184)
|.|++-+|.+. .++|+...+-+ ++|.. +++.+++++|+ ++|.++++++|.|| |+.++|++|+|
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~-~~r~s~~~~~y~fH~y~~~~gl~yl~ 80 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK-GSRASVKEQEYLCHVYVRSDSLAGVV 80 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT-TEEEEEECSSEEEEEEECTTSEEEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC-CCeEEEEeCCEEEEEEEecCCEEEEE
Confidence 77888888884 26677654422 22433 45788899876 67999999999999 99999999999
Q ss_pred EeeCCCCcccHHHHHHHHHHHHHhhcCCCCcccccccccchHHHHHHHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHH
Q 029988 68 VAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMME 147 (184)
Q Consensus 68 vt~~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ 147 (184)
||+++||+++||.||++|+++|...|+...|....+. ...| +.|+++|++| +||.+.|++.+++.+|+||++||.+
T Consensus 81 itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~--~~~f-~~l~~~m~~Y-~dp~~~d~l~~~q~el~evk~iM~~ 156 (199)
T 3kyq_A 81 IADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPA--TIHY-TALDGHLSRY-QNPREADPMSKVQAELDETKIILHN 156 (199)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTT--TCCC-CTHHHHHHHT-TSGGGCCCCHHHHHHHHTCCCEEES
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHhccchhhhccccc--cccc-HHHHHHHHHh-CCchhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986545322211 1236 6889999999 7788889999999999999999999
Q ss_pred hHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 148 NIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 148 ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
||+++|+|||+||.|++||++|+++|+.|++.+
T Consensus 157 NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a 189 (199)
T 3kyq_A 157 TMESLLERGEKLDDLVSKSEVLGTQSKAFYKTA 189 (199)
T ss_dssp SGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876
No 4
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=6e-36 Score=222.08 Aligned_cols=120 Identities=33% Similarity=0.582 Sum_probs=114.7
Q ss_pred CcceEEEEEEeCCeeEEeecCCCCCHHHHHHHHhccCCCCCCeeEEEEcCeEEEEEeeCCEEEEEEeeCCCCcccHHHHH
Q 029988 3 QQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFL 82 (184)
Q Consensus 3 ~m~i~ya~Iar~~~iLae~~~~~~~~~~~a~~vL~ki~~~~~k~~~~~~~~~fh~l~~~~~~~v~vt~~~~~~~~af~fL 82 (184)
.|+|+|||||||++|||||+..+|||..+++++|+++|+.++|+++++++|.|||+.++|++|+|||++++|+++||.||
T Consensus 53 ~M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL 132 (173)
T 4afi_A 53 AMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 132 (173)
T ss_dssp CCCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred cccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence 59999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcccccccccchHHHHHHHHhhhhhcC
Q 029988 83 ERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVD 123 (184)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~ 123 (184)
++|+++|...|+. .|.++.+++++.+|++.|+++|++||+
T Consensus 133 edI~~eF~~~yg~-~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 133 NEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHGG-GGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhch-hhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 9999999999985 578888999999999999999999964
No 5
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.97 E-value=1.3e-31 Score=198.14 Aligned_cols=121 Identities=32% Similarity=0.578 Sum_probs=107.1
Q ss_pred CcceEEEEEEeCCeeEEeecCCCCCHHHHHHHHhccCCCCCCeeEEEEcCeEEEEEeeCCEEEEEEeeCCCCcccHHHHH
Q 029988 3 QQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFL 82 (184)
Q Consensus 3 ~m~i~ya~Iar~~~iLae~~~~~~~~~~~a~~vL~ki~~~~~k~~~~~~~~~fh~l~~~~~~~v~vt~~~~~~~~af~fL 82 (184)
+|+|+|+||+||++|||||++.++||..+++.+++++++.+++.+++.++|.|||+.++|++|+|||+++||+++||.||
T Consensus 43 ~M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 43 GMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SSCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 49999999999999999999999999999999999999878899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCcccccccccchHHHHHHHHhhhhhcCC
Q 029988 83 ERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDH 124 (184)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~ 124 (184)
++|+++|...|+. .|.++.+++++.+|++.|++.|++|+++
T Consensus 123 edI~~eF~~~y~~-~~~~a~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 123 NEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHTT-GGGTCCTTTTHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHhhh-hhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence 9999999999986 4666667777679999999999999654
No 6
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.94 E-value=4.6e-26 Score=164.80 Aligned_cols=124 Identities=13% Similarity=0.166 Sum_probs=100.7
Q ss_pred CcceEEEEEEeC----CeeEEeecCCC----------CCH-HHHHHHHhccCCCCCCeeEEEEcCeEEEEE-eeCCEEEE
Q 029988 3 QQSLIYSFVARG----TVILAEYTEFT----------GNF-TSIASQCLQKLPATNNKFTYNCDGHTFNYL-VENGFTYC 66 (184)
Q Consensus 3 ~m~i~ya~Iar~----~~iLae~~~~~----------~~~-~~~a~~vL~ki~~~~~k~~~~~~~~~fh~l-~~~~~~~v 66 (184)
.|.|+|.+|+|+ +++|+++++.+ ++| ..+++++++++|+ ++|+++++++|.|||+ +++|++|+
T Consensus 4 ~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~-~~R~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 4 AMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA-GQRQSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp CCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT-TEEEEEEETTEEEEEEECTTSEEEE
T ss_pred EEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC-CceEEEEeCCEEEEEEEecCCEEEE
Confidence 367999989998 68999998865 455 6789999999986 5899999999999999 78999999
Q ss_pred EEeeCCCCcccHHHHHHHHHHHHHhhcCCCCcccccc-cccchHHHHHHHHhhhhhcCChhHhHH
Q 029988 67 VVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVA-NSLNKEFGSKLKEHMQYCVDHPEEISK 130 (184)
Q Consensus 67 ~vt~~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~-~~~~~~F~~~l~~~~~~yn~~~~~~dk 130 (184)
||||++||+++||.||++|+++|...|+...|.++.+ .+ .-.| +.|++.|++| +||.+.|+
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~-~~~f-~~l~~~i~kY-qdp~~aD~ 144 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND-ALKM-KQLDTYISKY-QDPSQADA 144 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCG-GGCC-THHHHHHHHT-SCC-----
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccC-Ccch-HHHHHHHHHh-CchhhcCC
Confidence 9999999999999999999999999998654555332 11 2345 7889999999 78877664
No 7
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.81 E-value=5.5e-20 Score=114.95 Aligned_cols=57 Identities=26% Similarity=0.471 Sum_probs=50.2
Q ss_pred ChhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 124 ~~~~~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
+|...|+|.+++.+|+||+.||.+||++||+|||+||.|++||++|+.+|+.|++.|
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A 60 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTS 60 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455679999999999999999999999999999999999999999999999999876
No 8
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.78 E-value=4.8e-19 Score=109.32 Aligned_cols=52 Identities=31% Similarity=0.514 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
|++.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|+.|++.+
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a 53 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999876
No 9
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.78 E-value=4.5e-19 Score=110.26 Aligned_cols=53 Identities=30% Similarity=0.450 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
.|++.+++.+|++|++||.+||+++|+|||+||.|++||++|+.+|+.|++.+
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a 55 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999876
No 10
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.77 E-value=1.7e-19 Score=115.60 Aligned_cols=57 Identities=37% Similarity=0.495 Sum_probs=52.4
Q ss_pred ChhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 124 ~~~~~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
+|.+.|++.+++.+|+||++||.+||++||+|||+||.|++||++|+.+|..|++.+
T Consensus 3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a 59 (74)
T 2nps_A 3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRS 59 (74)
T ss_dssp ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455679999999999999999999999999999999999999999999999999876
No 11
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.74 E-value=5.5e-18 Score=112.69 Aligned_cols=53 Identities=30% Similarity=0.483 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
.|++.+++++|+||++||.+|||++|+|||+||.|++||++|+++|+.|.+.+
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A 56 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 56 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999876
No 12
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.73 E-value=6.5e-19 Score=114.53 Aligned_cols=56 Identities=32% Similarity=0.450 Sum_probs=53.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 125 PEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 125 ~~~~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
|...|+|.+++.+|+||++||.+||++||+|||+||.|++||++|+.+|..|.+.+
T Consensus 11 ~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A 66 (80)
T 1l4a_A 11 VQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASA 66 (80)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44579999999999999999999999999999999999999999999999999875
No 13
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.73 E-value=7e-18 Score=113.07 Aligned_cols=54 Identities=30% Similarity=0.443 Sum_probs=51.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 127 EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 127 ~~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
..|+|.+++.+|+||++||.+||++||+|||+||.|++||++|+.+|+.|.+.+
T Consensus 28 ~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A 81 (96)
T 1sfc_A 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 81 (96)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999999999999999876
No 14
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.65 E-value=3.1e-16 Score=96.59 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
+++..++.++++|++||.+||+++++|||+|+.|++||++|.++|..|.+.+
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A 55 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHA 55 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999998764
No 15
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.58 E-value=1.9e-17 Score=115.13 Aligned_cols=54 Identities=30% Similarity=0.443 Sum_probs=51.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 127 EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 127 ~~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
+.|++.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|+.|.+.+
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A 84 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 84 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999999999999999876
No 16
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.51 E-value=4.2e-08 Score=78.78 Aligned_cols=54 Identities=22% Similarity=0.508 Sum_probs=33.9
Q ss_pred cchHHHHHHHHhhhhhcC--------------ChhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 029988 106 LNKEFGSKLKEHMQYCVD--------------HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 159 (184)
Q Consensus 106 ~~~~F~~~l~~~~~~yn~--------------~~~~~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L 159 (184)
+...|.....++.++|.. .+...|.+.++|++|+||++||.+|||++|+|||+|
T Consensus 243 iykrf~~Q~e~L~~Fy~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 243 IYKKFLTRMTRISEFLKVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC------------------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 345666666666666621 011257999999999999999999999999999987
No 17
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.44 E-value=4.7e-11 Score=65.90 Aligned_cols=30 Identities=40% Similarity=0.550 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 029988 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGE 157 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~ni~~il~Rge 157 (184)
.|++.+++.+|+||++||.+||+++|+||+
T Consensus 8 ~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 8 NRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 588999999999999999999999999996
No 18
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.97 E-value=7e-06 Score=60.73 Aligned_cols=90 Identities=11% Similarity=0.241 Sum_probs=63.8
Q ss_pred cceEEEEEEeCCeeEEeecCCCCC----HHHHHHHHhccCCCCCCeeEEEEcCeEEEEEeeC--CEEEEEEeeCCCCccc
Q 029988 4 QSLIYSFVARGTVILAEYTEFTGN----FTSIASQCLQKLPATNNKFTYNCDGHTFNYLVEN--GFTYCVVAVESAGRQI 77 (184)
Q Consensus 4 m~i~ya~Iar~~~iLae~~~~~~~----~~~~a~~vL~ki~~~~~k~~~~~~~~~fh~l~~~--~~~~v~vt~~~~~~~~ 77 (184)
|-=+++.+.+|++||+.|+..... ...+++.+|-.=.. +..+|.+++|..++...+ +++||+|-..-.+-..
T Consensus 10 ~~D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~--~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~Y 87 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERG--GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTY 87 (185)
T ss_dssp SCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHH
T ss_pred ceeEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcccc--CCCceeEcCeEEEEEEeccCCEEEEEEEcccccchH
Confidence 334688999999999999543322 45666666643221 123578899998888876 6899999877666666
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 029988 78 PIAFLERVKEDFNKRYGG 95 (184)
Q Consensus 78 af~fL~~i~~~f~~~~~~ 95 (184)
.=.||+.|+..|...|.+
T Consensus 88 iD~LL~~v~~~Fv~~Y~~ 105 (185)
T 2fh5_A 88 VDKLIDDVHRLFRDKYRT 105 (185)
T ss_dssp HHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778999999999998864
No 19
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.013 Score=40.62 Aligned_cols=57 Identities=25% Similarity=0.422 Sum_probs=44.2
Q ss_pred HHHHHhccC-CCCC---CeeEEE-EcCeEEEEEe---eCCEEEEEEeeCCCCcccHHHHHHHHHH
Q 029988 31 IASQCLQKL-PATN---NKFTYN-CDGHTFNYLV---ENGFTYCVVAVESAGRQIPIAFLERVKE 87 (184)
Q Consensus 31 ~a~~vL~ki-~~~~---~k~~~~-~~~~~fh~l~---~~~~~~v~vt~~~~~~~~af~fL~~i~~ 87 (184)
+-..|++++ |-.. .|++.. ++||-++|.. +++.+++|++..+.|+.+|...|.++++
T Consensus 50 i~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 50 IMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 446677886 3223 344544 5899988887 3578999999999999999999999975
No 20
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=87.93 E-value=5.4 Score=28.07 Aligned_cols=87 Identities=13% Similarity=0.179 Sum_probs=58.2
Q ss_pred eEEEEEEe--CCeeEEeecCCC-CCH---HHHHHHHhccCCCCCCeeEEEEcCeEEEEEeeCCEEEEEEeeCCCCcccHH
Q 029988 6 LIYSFVAR--GTVILAEYTEFT-GNF---TSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPI 79 (184)
Q Consensus 6 i~ya~Iar--~~~iLae~~~~~-~~~---~~~a~~vL~ki~~~~~k~~~~~~~~~fh~l~~~~~~~v~vt~~~~~~~~af 79 (184)
|.+-+|.. |.++|+-|=... ... ....+.+.+++...+. -.+..+++.+.|....++.|+++++.+...-..+
T Consensus 13 I~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~-~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~il 91 (153)
T 3tjz_C 13 VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDS-EIALLEGLTVVYKSSIDLYFYVIGSSYENELMLM 91 (153)
T ss_dssp EEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCC-CEEEETTEEEEEEECSSCEEEEEEETTSCHHHHH
T ss_pred heEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCC-CEEEECCEEEEEEEECCEEEEEEEcCCCChHHHH
Confidence 44555543 457777653321 221 1223344444433232 3567899999999999999999999998888899
Q ss_pred HHHHHHHHHHHhhc
Q 029988 80 AFLERVKEDFNKRY 93 (184)
Q Consensus 80 ~fL~~i~~~f~~~~ 93 (184)
.||..+.+-+..-+
T Consensus 92 e~L~~~ve~l~~yf 105 (153)
T 3tjz_C 92 TVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99998887777656
No 21
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=86.05 E-value=6.5 Score=27.06 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=41.4
Q ss_pred eEEEEcCeEEEEEeeCCEEEEEEeeCCCCcccHHHHHHHHHHHHHhhcC
Q 029988 46 FTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYG 94 (184)
Q Consensus 46 ~~~~~~~~~fh~l~~~~~~~v~vt~~~~~~~~af~fL~~i~~~f~~~~~ 94 (184)
-.+..+++.|.|...+++.|+|+++.+...-..+.||..+.+-+..-++
T Consensus 48 ~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 48 NFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 3567799999999899999999999999888899999888877765554
No 22
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=85.35 E-value=5.4 Score=25.87 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHh
Q 029988 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAV 177 (184)
Q Consensus 130 kl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~ 177 (184)
-...+..+|++++.-|.+-|+.+=.+=..||.+..++..|..-|..+.
T Consensus 37 tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~ 84 (96)
T 1t3j_A 37 TFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLE 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 357889999999999999999999999999999999888888776544
No 23
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=83.51 E-value=10 Score=31.12 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=41.1
Q ss_pred EEEEcCeEEEEEeeCCEEEEEEeeCCCCcccHHHHHHHHHHHHHhhcC
Q 029988 47 TYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYG 94 (184)
Q Consensus 47 ~~~~~~~~fh~l~~~~~~~v~vt~~~~~~~~af~fL~~i~~~f~~~~~ 94 (184)
.+..+++.|.|...+++.|+|+++.+...-..+.||..+.+-+..-++
T Consensus 49 ~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 49 ILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFK 96 (423)
T ss_dssp EEEETTEEEEEEEETTEEEEEEESSCCCTHHHHHHHHHHHHHHHHHSS
T ss_pred EEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 567889999999999999999999998888899999988877765554
No 24
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=83.15 E-value=16 Score=29.98 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=41.0
Q ss_pred eEEEEcCeEEEEEeeCCEEEEEEeeCCCCcccHHHHHHHHHHHHHhhcC
Q 029988 46 FTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYG 94 (184)
Q Consensus 46 ~~~~~~~~~fh~l~~~~~~~v~vt~~~~~~~~af~fL~~i~~~f~~~~~ 94 (184)
-.+..+++.|.|...+++.|+|+++.+...-..+.||..+.+-+..-++
T Consensus 46 ~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 46 PVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999998888889999888776665554
No 25
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=82.41 E-value=11 Score=26.57 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=40.9
Q ss_pred EEEEcCeEEEEEeeCCEEEEEEeeCCCCcccHHHHHHHHHHHHHhhcC
Q 029988 47 TYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYG 94 (184)
Q Consensus 47 ~~~~~~~~fh~l~~~~~~~v~vt~~~~~~~~af~fL~~i~~~f~~~~~ 94 (184)
.+..+++.|.|...+++.|+|+++.+...-..+.||..+.+-+..-++
T Consensus 49 ~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 49 FLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred eEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 567799999999999999999999998888899999888777765554
No 26
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=79.53 E-value=13 Score=26.24 Aligned_cols=87 Identities=15% Similarity=0.097 Sum_probs=51.8
Q ss_pred HHHhccCCCC---CCeeEEEEcCeEEEEEe-eCCEEEEEEeeCCCCcccHHHHHHHHHH-HHHhhcCCCC-----ccccc
Q 029988 33 SQCLQKLPAT---NNKFTYNCDGHTFNYLV-ENGFTYCVVAVESAGRQIPIAFLERVKE-DFNKRYGGGK-----AATAV 102 (184)
Q Consensus 33 ~~vL~ki~~~---~~k~~~~~~~~~fh~l~-~~~~~~v~vt~~~~~~~~af~fL~~i~~-~f~~~~~~~~-----~~~~~ 102 (184)
+.+..++.+. ++-..++.+.|..|+.. -.|+-||++++.. ..-.-.+|.+|.. -|.+-...+. .....
T Consensus 52 ~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~--~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~ 129 (159)
T 3cue_C 52 RSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFK--QQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENE 129 (159)
T ss_dssp HHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSS--SSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSC
T ss_pred HHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCC--cchHHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence 3444566433 34457777888766665 4799999999865 3345678888886 6665211110 00000
Q ss_pred --------ccccchHHHHHHHHhhhhh
Q 029988 103 --------ANSLNKEFGSKLKEHMQYC 121 (184)
Q Consensus 103 --------~~~~~~~F~~~l~~~~~~y 121 (184)
.+--...|+..++++++.+
T Consensus 130 ~~~~~~~~~pI~s~~Fd~~l~~~~~~~ 156 (159)
T 3cue_C 130 NEMRGQGTRKITNRNFISVLESFLAPM 156 (159)
T ss_dssp TTTTTSCCCCCCCHHHHHHHHHHTSCC
T ss_pred cccccccCcCcccHHHHHHHHHHHHhc
Confidence 1112456888888888765
No 27
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=79.51 E-value=4 Score=25.32 Aligned_cols=43 Identities=12% Similarity=0.075 Sum_probs=35.8
Q ss_pred HHHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 029988 113 KLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (184)
Q Consensus 113 ~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ni~~il~R 155 (184)
..+..++.|+.+|.......++++-++....-=..||.++|++
T Consensus 22 ~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 22 NYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567778898888888999999999998888888888888875
No 28
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=78.14 E-value=15 Score=25.54 Aligned_cols=76 Identities=8% Similarity=0.034 Sum_probs=48.4
Q ss_pred CeeEEEEcCeEEEEEe-eCCEEEEEEeeCCCCcccHHHHHHHHH-HHHHhhcCCCCcccccccccchHHHHHHHHhhhhh
Q 029988 44 NKFTYNCDGHTFNYLV-ENGFTYCVVAVESAGRQIPIAFLERVK-EDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYC 121 (184)
Q Consensus 44 ~k~~~~~~~~~fh~l~-~~~~~~v~vt~~~~~~~~af~fL~~i~-~~f~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~y 121 (184)
+-.+++.+.|..|+.. -.|+-|+.+++... .-.-.||.+|. +.|.+..-.+..-....+-....|+..++.+++.+
T Consensus 60 ~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~--~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 60 GFLSFQTSRYKLHYYETPTGIKVVMNTDLGV--GPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137 (145)
T ss_dssp CEEEEECSSCEEEEEECTTSCEEEEEECTTC--CCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTS
T ss_pred ceEEEecCCEEEEEEEcCCCCEEEEEecCCc--chHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhC
Confidence 4567788888666665 47999999998753 33668999999 67765222111100011112456888888888765
No 29
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=78.10 E-value=19 Score=26.93 Aligned_cols=85 Identities=12% Similarity=0.047 Sum_probs=53.6
Q ss_pred hccCCCCC---CeeEEEEcCeEEEEEe-eCCEEEEEEeeCCCCcccHHHHHHHHHHHHHhhcCCCCcccccccccchHHH
Q 029988 36 LQKLPATN---NKFTYNCDGHTFNYLV-ENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFG 111 (184)
Q Consensus 36 L~ki~~~~---~k~~~~~~~~~fh~l~-~~~~~~v~vt~~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~F~ 111 (184)
-.++.+.+ +-.+++.+.|..|+.. -.|+-|+++++.. ..-.-.||.+|.+.|.+..-.+..-....+-....|+
T Consensus 122 ~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s~~Fd 199 (219)
T 2j3t_D 122 GSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFD 199 (219)
T ss_dssp HHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCCHHHH
T ss_pred HHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHHH
Confidence 34564422 3357788888766665 4799999999875 5556789999998777532211110001111245699
Q ss_pred HHHHHhhhhhc
Q 029988 112 SKLKEHMQYCV 122 (184)
Q Consensus 112 ~~l~~~~~~yn 122 (184)
..++.+++.+.
T Consensus 200 ~~v~~l~~~~~ 210 (219)
T 2j3t_D 200 QNLKLALEVAE 210 (219)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999988873
No 30
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=77.85 E-value=16 Score=27.43 Aligned_cols=73 Identities=15% Similarity=0.163 Sum_probs=45.0
Q ss_pred eEEEEcCeEEEEEe-eCCEEEEEEeeCCCCc----------------------ccHHHHHHHHHHHHHhhcCCC---Ccc
Q 029988 46 FTYNCDGHTFNYLV-ENGFTYCVVAVESAGR----------------------QIPIAFLERVKEDFNKRYGGG---KAA 99 (184)
Q Consensus 46 ~~~~~~~~~fh~l~-~~~~~~v~vt~~~~~~----------------------~~af~fL~~i~~~f~~~~~~~---~~~ 99 (184)
..+..+.|..|+.. -.|+-||++++...+. ...-.||.+|...|.+..-.. ...
T Consensus 120 ~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~~ 199 (219)
T 3cue_A 120 RQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSME 199 (219)
T ss_dssp CEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCTT
T ss_pred EEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 46667777655554 5799999999987633 345689999998887622111 111
Q ss_pred cccccccchHHHHHHHHhhhhh
Q 029988 100 TAVANSLNKEFGSKLKEHMQYC 121 (184)
Q Consensus 100 ~~~~~~~~~~F~~~l~~~~~~y 121 (184)
..+ -...|+..++.+++.+
T Consensus 200 ~pI---~S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 200 MPI---RSNLFDEKVKKMVENL 218 (219)
T ss_dssp SCC---CCHHHHHHHHHHHHHH
T ss_pred Ccc---ccHHHHHHHHHHHHhc
Confidence 111 1345777777777654
No 31
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=77.32 E-value=3.6 Score=25.04 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=35.4
Q ss_pred HHHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 029988 113 KLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRG 156 (184)
Q Consensus 113 ~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ni~~il~Rg 156 (184)
..+..++.|+.+|.......++++-++....-=..||.++|++-
T Consensus 20 ~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~kI 63 (70)
T 1utg_A 20 SYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEKI 63 (70)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34667788888888888999999999887777788888887753
No 32
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=77.29 E-value=15 Score=25.29 Aligned_cols=75 Identities=8% Similarity=-0.050 Sum_probs=46.0
Q ss_pred eeEEEEcCeEEEEE-eeCCEEEEEEeeCCCCcccHHHHHHHHHHHHHhhcCCCCcccccccccchHHHHHHHHhhhhh
Q 029988 45 KFTYNCDGHTFNYL-VENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYC 121 (184)
Q Consensus 45 k~~~~~~~~~fh~l-~~~~~~~v~vt~~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~y 121 (184)
+.+...++|..|+. +..|+-|+.+++.. ...-.-.||.+|.+.|.+...+ ..-....+-....|+..++++++.|
T Consensus 64 ~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~N-Pfy~~~~pI~s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 64 KTVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAMN-PFYEPNSPIRSSAFDRKVQFLGKKH 139 (142)
T ss_dssp EEEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHHS-TTCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred EeeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhcC-CCCCCCCceecHHHHHHHHHHHHHh
Confidence 34556677754444 45799999999863 2344668899998877653221 1100011112356888888888776
No 33
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=74.34 E-value=3 Score=20.44 Aligned_cols=24 Identities=29% Similarity=0.635 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhH
Q 029988 133 KVKAQVSEVKGVMMENIEKVLDRGEKIE 160 (184)
Q Consensus 133 ~~~~~l~~v~~im~~ni~~il~Rge~L~ 160 (184)
.++.++.++| ++||.+|+|=|+++
T Consensus 3 ~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 4556666654 58888888877664
No 34
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=71.27 E-value=9.8 Score=24.93 Aligned_cols=43 Identities=14% Similarity=0.439 Sum_probs=33.0
Q ss_pred ceEEEEEEeCCeeEEeecCCCCCHHHHHHHHhccCCCCCCeeEEEEcCeEEEEEe
Q 029988 5 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLV 59 (184)
Q Consensus 5 ~i~ya~Iar~~~iLae~~~~~~~~~~~a~~vL~ki~~~~~k~~~~~~~~~fh~l~ 59 (184)
.|+|..|.+..+ |.|++..|. +|....+-.++++++.+||...
T Consensus 85 giiyltiskdni--cqfsdekge----------qidinsqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 85 GIIYLTISKDNI--CQFSDEKGE----------QIDINSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp EEEEEEECTTCC--EEEECTTSC----------EECCCSSSSEEEETTEEEEEEE
T ss_pred cEEEEEEecCcc--eecccccCc----------EeeccccccceeecceEeehhc
Confidence 589999999988 999988765 3332334458999999999875
No 35
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=69.01 E-value=16 Score=21.93 Aligned_cols=44 Identities=14% Similarity=0.311 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHH
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~ 172 (184)
..+.+|+..|.|+.+++.+==.-|-+-|+.||.+....+.-...
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 49 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVH 49 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 57899999999999999888888889999999888776665543
No 36
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=65.38 E-value=19 Score=21.46 Aligned_cols=44 Identities=16% Similarity=0.345 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHH
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~ 172 (184)
+.+.+|.+.+.++.+++.+==.-|.+-|+.||.+....+.-...
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 53 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLD 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 56999999999999999988888899999999988877665543
No 37
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=62.85 E-value=23 Score=21.55 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHH
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRS 171 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~ 171 (184)
+.+.+|++.+.|+.+++.+==.-|.+-|+.||.+....+.-..
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 52 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5689999999999999988888888999999888776655443
No 38
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=62.26 E-value=22 Score=21.09 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHH
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~ 172 (184)
+.+.+|.+.+.++.+++.+==.-|.+-|+.||.+....+.-...
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 55 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 55 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56999999999999999988888899999999988877665543
No 39
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=62.25 E-value=6.9 Score=25.28 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=33.8
Q ss_pred HHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 029988 114 LKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (184)
Q Consensus 114 l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ni~~il~R 155 (184)
.+..++.|+.+|...+...++++-+++....=..||.++|++
T Consensus 42 Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 42 YEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356667888888888889999999998877778888888764
No 40
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=61.51 E-value=22 Score=20.90 Aligned_cols=45 Identities=13% Similarity=0.307 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHH
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQV 173 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s 173 (184)
..+.+|.+.+.++.+++.+==.-|-+-|+.||.+....+.-....
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 53 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHV 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999998888888899999999888777655443
No 41
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=59.88 E-value=34 Score=22.42 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHH
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLR 170 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~ 170 (184)
+.+.++++.+.|+.+++.+==..+-+.|+.||.++...++-.
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~ 62 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 62 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 568899999999999888877888889998888887766544
No 42
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=57.36 E-value=19 Score=25.31 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=32.0
Q ss_pred HHHHhhhhhcCChhHhHHHHHHHHHHH-HHHHHHHHhHHHHHHh
Q 029988 113 KLKEHMQYCVDHPEEISKLAKVKAQVS-EVKGVMMENIEKVLDR 155 (184)
Q Consensus 113 ~l~~~~~~yn~~~~~~dkl~~~~~~l~-~v~~im~~ni~~il~R 155 (184)
..+..++.|+.+|.......++++-++ ....-=..||.++|++
T Consensus 21 eYk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLek 64 (153)
T 1zkr_A 21 EYVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDK 64 (153)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 346677788888888889999999999 5555555666666655
No 43
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=55.99 E-value=26 Score=19.87 Aligned_cols=40 Identities=8% Similarity=0.198 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHH
Q 029988 134 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQV 173 (184)
Q Consensus 134 ~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s 173 (184)
...-+.++.++..+.+..+-+.||.|+.....-++....-
T Consensus 5 ~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l 44 (54)
T 1nhl_A 5 ILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDM 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHH
Confidence 4556778888899999999999999988877777666543
No 44
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=52.34 E-value=18 Score=21.91 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhh
Q 029988 135 KAQVSEVKGVMMENIEKVLDRG 156 (184)
Q Consensus 135 ~~~l~~v~~im~~ni~~il~Rg 156 (184)
..+++++++|+..|+.++=+|.
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~ 27 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRL 27 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3678999999999999998875
No 45
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=48.60 E-value=44 Score=20.35 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhc
Q 029988 138 VSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADC 180 (184)
Q Consensus 138 l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~ 180 (184)
|.+.+....+=++++-++.+.|+.|+..-......-+.+...+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566666677777777777777766666666665544
No 46
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=47.87 E-value=47 Score=20.49 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHH
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRS 171 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~ 171 (184)
..+.+|...+.++.+++.+==.-|-+-|+.|+.+....+.-..
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 63 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4699999999999999988888888999999988776665543
No 47
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=39.19 E-value=35 Score=16.57 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 029988 128 ISKLAKVKAQVSEVKGVMMEN 148 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~n 148 (184)
.+|+.-++..|+|-++|..++
T Consensus 5 ~sKm~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 5 ASKMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999998775
No 48
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=38.78 E-value=67 Score=19.69 Aligned_cols=46 Identities=11% Similarity=0.265 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHH
Q 029988 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQV 173 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s 173 (184)
.+.+.....-+.++.++-...+..+-+.||.|+.....-.+....-
T Consensus 22 ~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l 67 (79)
T 1n7s_C 22 LESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDM 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHH
Confidence 5778888889999999999999999999999998888777666543
No 49
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=34.26 E-value=56 Score=19.32 Aligned_cols=19 Identities=32% Similarity=0.608 Sum_probs=8.7
Q ss_pred HHHhhhhhHHHHHhHHHHH
Q 029988 152 VLDRGEKIELLVDKTENLR 170 (184)
Q Consensus 152 il~Rge~L~~L~~kt~~L~ 170 (184)
++++|++|..|...+....
T Consensus 7 LveNgekI~~L~~~v~~~e 25 (64)
T 3t97_C 7 LIENGEKITSLHREVEKVK 25 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 50
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=30.76 E-value=98 Score=19.22 Aligned_cols=59 Identities=7% Similarity=0.250 Sum_probs=44.2
Q ss_pred HHHHhhhhhcCChhHhHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHH
Q 029988 113 KLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQV 173 (184)
Q Consensus 113 ~l~~~~~~yn~~~~~~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s 173 (184)
.++..+.+. .+ ...+.....-.-+++.+.+...++..+.+-||+|+......+.+...-
T Consensus 13 ~l~~~~~~~-~~-esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl 71 (83)
T 1l4a_C 13 EIQQQCNQV-TD-DSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDM 71 (83)
T ss_dssp HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 22 235667777888899999999999999999999999888887776543
No 51
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=27.23 E-value=85 Score=17.83 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 029988 128 ISKLAKVKAQVSEVKGVMMEN 148 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~n 148 (184)
.+.+..++++++-+.++..+|
T Consensus 6 ~~sl~~l~~ql~sla~vvlQN 26 (53)
T 1y4m_A 6 AKALTTMQEQIDSLAAVVLQN 26 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999888777
No 52
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=25.30 E-value=39 Score=18.93 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 029988 128 ISKLAKVKAQVSEVKG 143 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~ 143 (184)
.++|++++.+|++|+.
T Consensus 31 ~ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 31 RERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4789999999999864
No 53
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.72 E-value=1.4e+02 Score=18.95 Aligned_cols=55 Identities=7% Similarity=0.130 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhcccC
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADCLFR 183 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~~~~ 183 (184)
+.+..++.-+.+..+-+.+.=+++=.=.++-+.|...|..-...|+...++..++
T Consensus 37 ~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwk 91 (96)
T 1sfc_A 37 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666655555555565555555556666778889999999999888776543
No 54
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.66 E-value=2.1e+02 Score=21.46 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhH
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 166 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt 166 (184)
..++.+...++++.+.....-..+-...++|.+|.+.+
T Consensus 13 ErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 13 ERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777777777777666665555556666666666553
No 55
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=24.00 E-value=1.4e+02 Score=18.85 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHH
Q 029988 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLR 170 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~ 170 (184)
..++..+-..+..++--|..+|++-.++-+.|-+|.+|-..-.
T Consensus 32 d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a~ 74 (91)
T 2pjw_V 32 DSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEIM 74 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999888877777765443
No 56
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=23.32 E-value=1.1e+02 Score=17.50 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 029988 128 ISKLAKVKAQVSEVKGVMMEN 148 (184)
Q Consensus 128 ~dkl~~~~~~l~~v~~im~~n 148 (184)
.+.+..+++++.-+.++.-+|
T Consensus 8 ~~si~~l~~ql~sla~vvlQN 28 (55)
T 1mof_A 8 EKSISNLEKSLTSLSEVVLQN 28 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888877766
No 57
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.81 E-value=1.2e+02 Score=17.65 Aligned_cols=51 Identities=10% Similarity=0.169 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhh
Q 029988 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVAD 179 (184)
Q Consensus 129 dkl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~ 179 (184)
..+..+...+.+-.+-+.+.-+++=.=.++-+.|.+.++.-+..|..+.++
T Consensus 11 ~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~K 61 (63)
T 1urq_A 11 GAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLK 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666677777777777777788889999999999999988765
No 58
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=21.09 E-value=1.5e+02 Score=17.99 Aligned_cols=54 Identities=7% Similarity=0.126 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHhHHHHHHHHHHHhhhcccC
Q 029988 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNLAVADCLFR 183 (184)
Q Consensus 130 kl~~~~~~l~~v~~im~~ni~~il~Rge~L~~L~~kt~~L~~~s~~f~~~~~~~ 183 (184)
.+..++.-+.+..+-+.+.=+++=.=.++-+.|...|..-..+|+...++..++
T Consensus 23 el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwk 76 (80)
T 1l4a_A 23 QVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWK 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444555677778888888888887766553
No 59
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=20.96 E-value=77 Score=15.13 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029988 130 KLAKVKAQVSEVKGVMM 146 (184)
Q Consensus 130 kl~~~~~~l~~v~~im~ 146 (184)
-+.++++.+.++++-|.
T Consensus 6 i~~kiK~kl~~akdK~k 22 (26)
T 2kfe_A 6 FMSNLKEKLSGVKEKMK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36677777777776654
Done!