Your job contains 1 sequence.
>029991
MKLRPFTLYLLPVLVIAISSSFQVRAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLR
RAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAV
DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRVHSGEVGK
ALPF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029991
(184 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2024011 - symbol:NFD2 "NUCLEAR FUSION DEFECTIV... 460 1.3e-43 1
TIGR_CMR|CJE_1807 - symbol:CJE_1807 "ribonuclease III" sp... 128 3.0e-07 1
TIGR_CMR|DET_1025 - symbol:DET_1025 "ribonuclease III" sp... 117 1.7e-05 1
TIGR_CMR|CBU_1503 - symbol:CBU_1503 "ribonuclease III" sp... 112 7.8e-05 1
ASPGD|ASPL0000030048 - symbol:AN5408 species:162425 "Emer... 100 0.00027 1
>TAIR|locus:2024011 [details] [associations]
symbol:NFD2 "NUCLEAR FUSION DEFECTIVE 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0006396 "RNA processing" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0051607 "defense response to
virus" evidence=RCA] InterPro:IPR000999 InterPro:IPR011907
PROSITE:PS50142 SMART:SM00535 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005773 GO:GO:0003723 GO:GO:0006396
GO:GO:0016075 EMBL:AC000103 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 PANTHER:PTHR11207 EMBL:AY045598 EMBL:AY094027
RefSeq:NP_173854.1 UniGene:At.15895 ProteinModelPortal:Q9FYL8
SMR:Q9FYL8 PaxDb:Q9FYL8 PRIDE:Q9FYL8 EnsemblPlants:AT1G24450.1
GeneID:839061 KEGG:ath:AT1G24450 TAIR:At1g24450 eggNOG:NOG241668
HOGENOM:HOG000077389 InParanoid:Q9FYL8 OMA:RAMTHAS PhylomeDB:Q9FYL8
ProtClustDB:CLSN2682398 Genevestigator:Q9FYL8 Uniprot:Q9FYL8
Length = 191
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 101/182 (55%), Positives = 127/182 (69%)
Query: 6 FTLYLLPVLVIAISSSFQ----VRAANDQRFKT---SSPFATALETLQKQIGYTFKSIGL 58
FTL LL V V+ I SF VRA ++ + SSPFAT L LQ QIGY F +I L
Sbjct: 6 FTLLLL-VFVVGIFFSFSSVSHVRATSEINLRIEPFSSPFATDLAKLQTQIGYKFNNINL 64
Query: 59 LRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISC 118
LRRAMTH+SFS+ENN+AL I G ++I+T+VSL+ L KDIDIS K L R +SE SNVE SC
Sbjct: 65 LRRAMTHASFSQENNKALSIFGTHIIETAVSLQFLAKDIDISSKALGRLISEVSNVESSC 124
Query: 119 AVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRVHSGEV 178
A+DG LGL K++RVS KT+++ A++C FRAIFGAIA+D G D+A VF +VH
Sbjct: 125 ALDGDRLGLGKIIRVSTKTDASNSAILCTGFRAIFGAIAIDAGTVDEAIKVFWKVHGARA 184
Query: 179 GK 180
G+
Sbjct: 185 GR 186
>TIGR_CMR|CJE_1807 [details] [associations]
symbol:CJE_1807 "ribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_179777.1 ProteinModelPortal:Q5HSF8
STRING:Q5HSF8 GeneID:3232434 KEGG:cjr:CJE1807 PATRIC:20045436
BioCyc:CJEJ195099:GJC0-1841-MONOMER Uniprot:Q5HSF8
Length = 224
Score = 128 (50.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 37/124 (29%), Positives = 62/124 (50%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLERSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + V+ + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGREKPSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>TIGR_CMR|DET_1025 [details] [associations]
symbol:DET_1025 "ribonuclease III" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
TIGRFAMs:TIGR02191 HOGENOM:HOG000246808 OMA:LTHKSCK
RefSeq:YP_181741.1 ProteinModelPortal:Q3Z7Q8 STRING:Q3Z7Q8
GeneID:3229696 KEGG:det:DET1025 PATRIC:21609095
ProtClustDB:CLSK837151 BioCyc:DETH243164:GJNF-1026-MONOMER
Uniprot:Q3Z7Q8
Length = 237
Score = 117 (46.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 44/149 (29%), Positives = 69/149 (46%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L L+K +G F+++ LL +A+ H+S+ EN N + LG V+ + RL +
Sbjct: 4 LTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRLYH 63
Query: 95 KDIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
DI DL R V S V ++ ++ G +L L + S PA + GAF
Sbjct: 64 DFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDASK--GRFKPANLAGAF 121
Query: 150 RAIFGAIAVDTGKCDDAGDVFLRVHSGEV 178
A+ AI +D G D +V R+ E+
Sbjct: 122 EAVLAAIYLDKG-IDATREVIFRLFKTEM 149
>TIGR_CMR|CBU_1503 [details] [associations]
symbol:CBU_1503 "ribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 EMBL:L27436
KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 PIR:S60767 RefSeq:NP_820486.1
ProteinModelPortal:P51837 GeneID:1209413 KEGG:cbu:CBU_1503
PATRIC:17931771 BioCyc:CBUR227377:GJ7S-1488-MONOMER Uniprot:P51837
Length = 233
Score = 112 (44.5 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 35/123 (28%), Positives = 58/123 (47%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L +++G+ F ++ LL+ A+TH S +NN L LG V+ ++ L +
Sbjct: 4 LNKLMERLGHQFNNLELLKIALTHCSSGADNNERLEFLGDSVLGFIIASELYQRRPQARE 63
Query: 102 KDLNR-RVSETSNVEISCAVD--GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAV 158
DL+R R S + E++ G++ LQ V +++ A AI GAI +
Sbjct: 64 GDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGAIYI 123
Query: 159 DTG 161
D G
Sbjct: 124 DAG 126
>ASPGD|ASPL0000030048 [details] [associations]
symbol:AN5408 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000999 Pfam:PF00636 PROSITE:PS50142 SMART:SM00535
GO:GO:0003723 GO:GO:0006396 EMBL:BN001305 EMBL:AACD01000094
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
RefSeq:XP_663012.1 ProteinModelPortal:Q5B222
EnsemblFungi:CADANIAT00003684 GeneID:2871695 KEGG:ani:AN5408.2
eggNOG:NOG316199 HOGENOM:HOG000178297 OMA:VEDIIHY OrthoDB:EOG4FV09C
Uniprot:Q5B222
Length = 146
Score = 100 (40.3 bits), Expect = 0.00027, P = 0.00027
Identities = 33/131 (25%), Positives = 62/131 (47%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
LQ F + LL A+ S E N+A G+LGG + + + L +++++ +
Sbjct: 10 LQYHFDLPFLNPALLSGALLAPGVSTREGNKAFGLLGGTALQLYLQVEGLKREMNV--EQ 67
Query: 104 LNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVP-AVVCGAFRAIFGAIAVDTGK 162
+++ +S+ + + A G LG+ K +R +P S + ++ AI GA D G+
Sbjct: 68 ISQAMSQVAGKR-NLAQRGFDLGIDKWIRNNPSQGSYISDKLMATTMEAIVGAYFEDQGR 126
Query: 163 CDDAGDVFLRV 173
A + +RV
Sbjct: 127 TFAALEKIVRV 137
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 184 184 0.00078 110 3 11 22 0.40 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 542 (58 KB)
Total size of DFA: 124 KB (2081 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.63u 0.10s 16.73t Elapsed: 00:00:01
Total cpu time: 16.64u 0.10s 16.74t Elapsed: 00:00:01
Start: Fri May 10 03:59:14 2013 End: Fri May 10 03:59:15 2013