BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029991
(184 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225457085|ref|XP_002280078.1| PREDICTED: ribonuclease 3 [Vitis vinifera]
gi|297733813|emb|CBI15060.3| unnamed protein product [Vitis vinifera]
Length = 183
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/175 (70%), Positives = 140/175 (80%), Gaps = 3/175 (1%)
Query: 10 LLPVLVIAISSSFQVRAANDQR---FKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHS 66
+L + ++A S+FQ A N+ R K SSPF+ ALETLQKQIGYTF+SIGLLRRAMTHS
Sbjct: 6 ILTLFLLAKFSAFQAHAGNEVRDPILKPSSPFSLALETLQKQIGYTFQSIGLLRRAMTHS 65
Query: 67 SFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLG 126
SFSEENN+AL ILG I+TSVSL+ L KDI+ S KDLNRR+SE S VE SCAVD M LG
Sbjct: 66 SFSEENNKALSILGASTIETSVSLQYLKKDIEASAKDLNRRISEISQVESSCAVDAMRLG 125
Query: 127 LQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRVHSGEVGKA 181
LQKV+RVSPKTN++ PAVVCGAFRAIFGAIA+DTGK DDAG VF VH EVG A
Sbjct: 126 LQKVIRVSPKTNASTPAVVCGAFRAIFGAIAMDTGKSDDAGKVFWSVHGSEVGGA 180
>gi|388518535|gb|AFK47329.1| unknown [Lotus japonicus]
Length = 179
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/177 (66%), Positives = 137/177 (77%), Gaps = 13/177 (7%)
Query: 6 FTLYLLPVLVIAISSSFQVRAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTH 65
FTL L+P+L + Q SPF +ALETLQKQ+GY FK+I LLRRAMTH
Sbjct: 12 FTLILIPIL------------PHAQGHSLLSPFPSALETLQKQLGYNFKTISLLRRAMTH 59
Query: 66 SSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHL 125
+SFSEENN+AL ILG VI+TS S L++KDIDIS K+LNRR+S+ SNVE SCAVDG+HL
Sbjct: 60 ASFSEENNKALSILGAAVIETSASFHLISKDIDISAKELNRRLSQVSNVESSCAVDGVHL 119
Query: 126 GLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRVHS-GEVGKA 181
GL KVVRVSPKTNS+ PAVVCGAFRAIFGAIA+DTGK DDAG+VF +H G+VG A
Sbjct: 120 GLHKVVRVSPKTNSSAPAVVCGAFRAIFGAIAIDTGKSDDAGNVFWTIHGVGDVGVA 176
>gi|255540729|ref|XP_002511429.1| conserved hypothetical protein [Ricinus communis]
gi|223550544|gb|EEF52031.1| conserved hypothetical protein [Ricinus communis]
Length = 185
Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 124/190 (65%), Positives = 141/190 (74%), Gaps = 11/190 (5%)
Query: 1 MKLRPFTLYLLPVLVIAISSSFQVRAANDQRFK----TSSPFATALETLQKQIGYTFKSI 56
M R FTL+ L VL+ S QV AAND+ ++ +SSPFA+ALE LQKQI +++
Sbjct: 1 MSSRRFTLFTLLVLIAFFLS--QVLAANDRNYQKIKPSSSPFASALEALQKQIK---QNV 55
Query: 57 GLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEI 116
GLLRRAMTH SFSEENNRAL ++G VIDT VSL L KDIDIS K+LNRR++E S VE
Sbjct: 56 GLLRRAMTHPSFSEENNRALSVMGSNVIDTFVSLFSLRKDIDISSKELNRRIAEISKVET 115
Query: 117 SCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRVHSG 176
SCAVDGM LGL KVVRVS KTNST PAVVCGAFRA+FGAIA+DTGK DDAG VF VHS
Sbjct: 116 SCAVDGMRLGLDKVVRVSYKTNSTAPAVVCGAFRALFGAIAIDTGKSDDAGSVFWGVHSH 175
Query: 177 EV--GKALPF 184
GKA F
Sbjct: 176 NTISGKATAF 185
>gi|351723443|ref|NP_001236767.1| uncharacterized protein LOC100527745 precursor [Glycine max]
gi|255633098|gb|ACU16904.1| unknown [Glycine max]
Length = 188
Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/175 (63%), Positives = 138/175 (78%), Gaps = 2/175 (1%)
Query: 3 LRPFTLYLLPVLVIAISSSFQVRAANDQRFKT-SSPFATALETLQKQIGYTFKSIGLLRR 61
+R FT++ L ++ I + + R K SSPF+TALETLQKQ+GYTFKSI LLRR
Sbjct: 6 IRSFTIFTLFLIAI-LPHGHATTPTSKLRLKPLSSPFSTALETLQKQLGYTFKSIDLLRR 64
Query: 62 AMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVD 121
A+TH+SFSEENN+A ILG VI+TSVS LL++D+D+S K+LNRR+S+ +NV+ SCAVD
Sbjct: 65 AVTHASFSEENNKAFAILGASVIETSVSFHLLSRDVDLSSKELNRRLSQITNVDSSCAVD 124
Query: 122 GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRVHSG 176
G LGL KVVRVSPKTNS+ PAVVCGAFRAIFGA+A+DTGK DDAG+VF +H G
Sbjct: 125 GTRLGLHKVVRVSPKTNSSAPAVVCGAFRAIFGAVAIDTGKSDDAGNVFWNLHGG 179
>gi|224121666|ref|XP_002318642.1| predicted protein [Populus trichocarpa]
gi|222859315|gb|EEE96862.1| predicted protein [Populus trichocarpa]
Length = 179
Score = 224 bits (572), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 113/177 (63%), Positives = 132/177 (74%), Gaps = 5/177 (2%)
Query: 6 FTLYLLPVLVIAISSSFQVRAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTH 65
FT++ L VL S++ + R SSPF +AL+ LQ QIGYTFK+IG LRRAMTH
Sbjct: 6 FTVFALVVL-----STYSLAQFGASRKLKSSPFESALDILQNQIGYTFKNIGYLRRAMTH 60
Query: 66 SSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHL 125
SSFS+ENN+AL ILG VIDTSVS+ L KDI+IS KDLNR +SE + V+ SCAVDGM L
Sbjct: 61 SSFSQENNKALSILGSNVIDTSVSMYYLGKDIEISSKDLNRWISENAKVDTSCAVDGMRL 120
Query: 126 GLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRVHSGEVGKAL 182
GL +VVRVSPKTNST P VVC AFRAIFGAIA+DT K DDAG VF VH EVG+ +
Sbjct: 121 GLHRVVRVSPKTNSTAPTVVCSAFRAIFGAIAIDTRKVDDAGSVFWNVHCSEVGRVM 177
>gi|224135779|ref|XP_002322158.1| predicted protein [Populus trichocarpa]
gi|222869154|gb|EEF06285.1| predicted protein [Populus trichocarpa]
Length = 160
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/161 (68%), Positives = 126/161 (78%), Gaps = 3/161 (1%)
Query: 22 FQVRAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGG 81
QV AAN + SSPF +AL+TLQ Q GY FK+IG LRRAMTHSSFSEENN+AL ILG
Sbjct: 1 MQVGAANKLK---SSPFESALDTLQNQTGYAFKNIGYLRRAMTHSSFSEENNKALSILGS 57
Query: 82 YVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTV 141
VIDTSVS+ L KD +IS KDLNRR+++ S V+ SCAVDGM LGL KVVRVSPKTNST
Sbjct: 58 NVIDTSVSMYYLGKDAEISSKDLNRRIADNSKVDTSCAVDGMRLGLHKVVRVSPKTNSTT 117
Query: 142 PAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRVHSGEVGKAL 182
P VVC AFRA+FGAIA+DT K DDAG VF +VH EVGK +
Sbjct: 118 PLVVCSAFRALFGAIAIDTKKADDAGIVFWKVHGREVGKPM 158
>gi|357477313|ref|XP_003608942.1| Ribonuclease [Medicago truncatula]
gi|355509997|gb|AES91139.1| Ribonuclease [Medicago truncatula]
gi|388491248|gb|AFK33690.1| unknown [Medicago truncatula]
Length = 178
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/144 (70%), Positives = 120/144 (83%)
Query: 36 SPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNK 95
SPF++ALETLQKQ+GYTFKSI LLRRAMTH+SFSEENN+A ILG I+TSVS LL+K
Sbjct: 30 SPFSSALETLQKQLGYTFKSISLLRRAMTHASFSEENNKAFSILGATSIETSVSFNLLSK 89
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGA 155
D+DIS K+LNRR+S SNV+ SCAVD LGL KVVRVSPKTNS+ AVVCGAFR+IFGA
Sbjct: 90 DVDISAKELNRRLSLISNVDSSCAVDAKRLGLHKVVRVSPKTNSSSTAVVCGAFRSIFGA 149
Query: 156 IAVDTGKCDDAGDVFLRVHSGEVG 179
I++DTG + AG+VFL VH ++G
Sbjct: 150 ISLDTGSSEAAGNVFLTVHGRDLG 173
>gi|297851136|ref|XP_002893449.1| hypothetical protein ARALYDRAFT_472903 [Arabidopsis lyrata subsp.
lyrata]
gi|297339291|gb|EFH69708.1| hypothetical protein ARALYDRAFT_472903 [Arabidopsis lyrata subsp.
lyrata]
Length = 190
Score = 192 bits (487), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/181 (56%), Positives = 129/181 (71%), Gaps = 7/181 (3%)
Query: 6 FTLYLLPVLVIAISSSF---QVRAANDQRFKTS---SPFATALETLQKQIGYTFKSIGLL 59
FTL LL V+ I I SSF QV+A ++ + SPFAT L TLQ QIGY F + LL
Sbjct: 6 FTLLLL-VVAIGIFSSFSQVQVQATSEINLRIEPFPSPFATDLATLQTQIGYKFNNTNLL 64
Query: 60 RRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCA 119
RRAMTH+SFS+ENN+AL I G +I+TSVSL+ L KDIDIS K L R +++ SNVE SCA
Sbjct: 65 RRAMTHASFSQENNKALSIFGTNIIETSVSLQFLAKDIDISSKALRRLIAQVSNVESSCA 124
Query: 120 VDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRVHSGEVG 179
+DG LGL K++RVSPKT+++ A++C FRAIFGAIA+DTG D+A VF +VH G
Sbjct: 125 LDGDRLGLGKIIRVSPKTDASNSAILCAGFRAIFGAIAIDTGMVDEAIKVFWKVHGDRPG 184
Query: 180 K 180
+
Sbjct: 185 R 185
>gi|15221749|ref|NP_173854.1| nuclear fusion defective 2 protein /ribonuclease III [Arabidopsis
thaliana]
gi|9743333|gb|AAF97957.1|AC000103_7 F21J9.11 [Arabidopsis thaliana]
gi|15010594|gb|AAK73956.1| At1g24450/F21J9_210 [Arabidopsis thaliana]
gi|20334854|gb|AAM16183.1| At1g24450/F21J9_210 [Arabidopsis thaliana]
gi|332192410|gb|AEE30531.1| nuclear fusion defective 2 protein /ribonuclease III [Arabidopsis
thaliana]
Length = 191
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/187 (54%), Positives = 128/187 (68%), Gaps = 8/187 (4%)
Query: 1 MKLRPFTLYLLPVLVIAISSSF----QVRAANDQRFKT---SSPFATALETLQKQIGYTF 53
M FTL LL V V+ I SF VRA ++ + SSPFAT L LQ QIGY F
Sbjct: 1 MATLRFTLLLL-VFVVGIFFSFSSVSHVRATSEINLRIEPFSSPFATDLAKLQTQIGYKF 59
Query: 54 KSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSN 113
+I LLRRAMTH+SFS+ENN+AL I G ++I+T+VSL+ L KDIDIS K L R +SE SN
Sbjct: 60 NNINLLRRAMTHASFSQENNKALSIFGTHIIETAVSLQFLAKDIDISSKALGRLISEVSN 119
Query: 114 VEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRV 173
VE SCA+DG LGL K++RVS KT+++ A++C FRAIFGAIA+D G D+A VF +V
Sbjct: 120 VESSCALDGDRLGLGKIIRVSTKTDASNSAILCTGFRAIFGAIAIDAGTVDEAIKVFWKV 179
Query: 174 HSGEVGK 180
H G+
Sbjct: 180 HGARAGR 186
>gi|357519505|ref|XP_003630041.1| Ribonuclease, partial [Medicago truncatula]
gi|355524063|gb|AET04517.1| Ribonuclease, partial [Medicago truncatula]
Length = 127
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 82/98 (83%)
Query: 36 SPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNK 95
SPF++ALETLQKQ+GYTFKSI LLRRAMTH+SFSEENN+A ILG I+TSVS LL+K
Sbjct: 30 SPFSSALETLQKQLGYTFKSISLLRRAMTHASFSEENNKAFSILGATSIETSVSFNLLSK 89
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRV 133
D+DIS K+LNRR+S SNV+ SCAVD LGL KVVRV
Sbjct: 90 DVDISAKELNRRLSLISNVDSSCAVDAKRLGLHKVVRV 127
>gi|218194135|gb|EEC76562.1| hypothetical protein OsI_14382 [Oryza sativa Indica Group]
Length = 176
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 85/141 (60%), Gaps = 1/141 (0%)
Query: 34 TSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLL 93
+SSPF AL TLQ QI Y F + LLRRAMTH+S+S EN RAL +LG ++ +LR L
Sbjct: 26 SSSPFDAALATLQNQIAYRFHAPDLLRRAMTHASYSRENGRALAVLGLAASQSAAALRAL 85
Query: 94 NKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
D D S ++RR + S E +C +G+ +VRV+ T T P VVCGA RA+
Sbjct: 86 AADHDASASPVSRRARDASG-EAACVAAAARVGIPSIVRVAAGTKPTAPPVVCGALRALI 144
Query: 154 GAIAVDTGKCDDAGDVFLRVH 174
GA+AVD A +VF ++H
Sbjct: 145 GAVAVDANSTHAAEEVFWKLH 165
>gi|357474487|ref|XP_003607528.1| Ribonuclease [Medicago truncatula]
gi|355508583|gb|AES89725.1| Ribonuclease [Medicago truncatula]
Length = 104
Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 61/69 (88%)
Query: 36 SPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNK 95
SPF++ALETLQKQ+GYTFKSI LLRRAMTH+SFSEENN+A ILG +I+TSVS LL+K
Sbjct: 30 SPFSSALETLQKQLGYTFKSISLLRRAMTHASFSEENNKAFSILGATIIETSVSFNLLSK 89
Query: 96 DIDISPKDL 104
D+DIS KD+
Sbjct: 90 DVDISAKDV 98
>gi|226502082|ref|NP_001146877.1| RNA binding protein precursor [Zea mays]
gi|195604576|gb|ACG24118.1| RNA binding protein [Zea mays]
gi|413932386|gb|AFW66937.1| RNA binding protein [Zea mays]
Length = 179
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 94/142 (66%), Gaps = 1/142 (0%)
Query: 34 TSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLL 93
++SPF AL LQ ++GY F++ LLRRAMTHSS+S EN RAL +LG +++ +LR L
Sbjct: 29 SASPFDAALAALQSRVGYAFRAPALLRRAMTHSSYSHENGRALAVLGLAAAESAAALRAL 88
Query: 94 NKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
D D +P ++R SE ++ +CA G +G+ VVRVS +T++ P VVC A RA+
Sbjct: 89 AADADAAPSAVSRAASEAASGP-ACARAGARIGIPDVVRVSGQTSAAAPTVVCSALRALV 147
Query: 154 GAIAVDTGKCDDAGDVFLRVHS 175
GA+AVD D AG+VF R+H+
Sbjct: 148 GAVAVDANSTDAAGEVFWRLHA 169
>gi|357117278|ref|XP_003560399.1| PREDICTED: ribonuclease 3-like [Brachypodium distachyon]
Length = 192
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 85/137 (62%), Gaps = 1/137 (0%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
F AL L+K+IGY F+S GLLRR+MTH+S+S EN RAL +LG ++ +LR+L D
Sbjct: 45 FDAALAALEKRIGYGFRSPGLLRRSMTHASYSRENGRALAVLGLACAQSAAALRVLAADR 104
Query: 98 DISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
D + ++R + + A +G+ +VRV+ T ++ VVCGA RA+ GA+A
Sbjct: 105 DAAASAVSRGTRDAAGEAACAAAG-QRVGIPSIVRVAGGTKASAAPVVCGALRALVGAVA 163
Query: 158 VDTGKCDDAGDVFLRVH 174
+D G D AG+VF R+H
Sbjct: 164 LDNGTADAAGEVFWRLH 180
>gi|297722713|ref|NP_001173720.1| Os03g0854400 [Oryza sativa Japonica Group]
gi|255675058|dbj|BAH92448.1| Os03g0854400 [Oryza sativa Japonica Group]
Length = 176
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 85/141 (60%), Gaps = 1/141 (0%)
Query: 34 TSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLL 93
+SSPF AL TLQ QI Y F + LLRRAMTH+S+S EN RAL +LG ++ +LR L
Sbjct: 26 SSSPFDAALATLQNQIAYRFHAPDLLRRAMTHASYSRENGRALAVLGLAASQSAAALRAL 85
Query: 94 NKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
D D S ++RR + S E +C +G+ +VRV+ T T P VVCGA RA+
Sbjct: 86 AADHDASASAVSRRARDASG-EAACVAAAARVGIPSIVRVAAGTKPTAPPVVCGALRALI 144
Query: 154 GAIAVDTGKCDDAGDVFLRVH 174
GA+AVD A +VF ++H
Sbjct: 145 GAVAVDANSTHAAEEVFWKLH 165
>gi|116785242|gb|ABK23649.1| unknown [Picea sitchensis]
Length = 188
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Query: 37 PFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKD 96
P+ +++E LQ +I Y FK LL + MTH+SFS +NN L ILG +I+ ++S L+K+
Sbjct: 35 PYTSSIEELQTKIKYQFKDKSLLAKTMTHASFSLDNNAVLNILGSEIIEAAISFHYLSKN 94
Query: 97 IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
IS DL + ++ SN + + D L L +++RV+PK + +VCG +RA+FGAI
Sbjct: 95 STISKGDLTSQKAKISNCS-ALSKDAFDLQLNELIRVAPKVDPKAQIIVCGCYRALFGAI 153
Query: 157 AVDTGKCDDAGDVFL 171
VD D A + F
Sbjct: 154 GVDAKSLDVAREKFW 168
>gi|29126353|gb|AAO66545.1| hypothetical protein Os03g63740 [Oryza sativa Japonica Group]
gi|108712167|gb|ABF99962.1| expressed protein [Oryza sativa Japonica Group]
Length = 213
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 85/141 (60%), Gaps = 1/141 (0%)
Query: 34 TSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLL 93
+SSPF AL TLQ QI Y F + LLRRAMTH+S+S EN RAL +LG ++ +LR L
Sbjct: 26 SSSPFDAALATLQNQIAYRFHAPDLLRRAMTHASYSRENGRALAVLGLAASQSAAALRAL 85
Query: 94 NKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
D D S ++RR + S E +C +G+ +VRV+ T T P VVCGA RA+
Sbjct: 86 AADHDASASAVSRRARDASG-EAACVAAAARVGIPSIVRVAAGTKPTAPPVVCGALRALI 144
Query: 154 GAIAVDTGKCDDAGDVFLRVH 174
GA+AVD A +VF ++H
Sbjct: 145 GAVAVDANSTHAAEEVFWKLH 165
>gi|242032197|ref|XP_002463493.1| hypothetical protein SORBIDRAFT_01g000740 [Sorghum bicolor]
gi|241917347|gb|EER90491.1| hypothetical protein SORBIDRAFT_01g000740 [Sorghum bicolor]
Length = 183
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 94/142 (66%), Gaps = 1/142 (0%)
Query: 34 TSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLL 93
++SPF AL LQ ++GY F++ LLRRAMTH+S+S EN RAL +LG +++ +LR L
Sbjct: 33 SASPFDAALAALQSRVGYAFRAPSLLRRAMTHASYSRENGRALAVLGLAAAESAAALRAL 92
Query: 94 NKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
D+D +P ++R SE ++ HLG+Q VVRV+ +T+++ P VVCGA RA+
Sbjct: 93 ATDLDAAPSAVSRAASEAASGAACARAG-AHLGIQNVVRVAGRTSASAPTVVCGALRALV 151
Query: 154 GAIAVDTGKCDDAGDVFLRVHS 175
GA+ VD D AG+VF R+H+
Sbjct: 152 GAVTVDANSTDAAGEVFWRLHA 173
>gi|90704799|dbj|BAE92294.1| similarity to ribonuclease III [Cryptomeria japonica]
Length = 191
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
A++ LQ +I Y FK LL A+TH+S+S +NN AL +LG +I ++SL + + I
Sbjct: 38 AIKALQTKIRYQFKDQTLLILAITHASYSFDNNGALNVLGYNIIQAAISLHYVLNNSAIG 97
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDT 160
DL+ ++SE SN + + D L L +++V+PK N +++CG +RA+FGAI D
Sbjct: 98 SGDLHSKISELSNCTV-LSKDAFDLQLHDLIKVAPKINPKKQSILCGCYRALFGAIGAD- 155
Query: 161 GKCDDAGDVFL 171
D A + FL
Sbjct: 156 ANLDVAKEKFL 166
>gi|302771083|ref|XP_002968960.1| hypothetical protein SELMODRAFT_90770 [Selaginella moellendorffii]
gi|300163465|gb|EFJ30076.1| hypothetical protein SELMODRAFT_90770 [Selaginella moellendorffii]
Length = 128
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 2/128 (1%)
Query: 51 YTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSE 110
Y F LL+ A+THSS+S NN L +LG +I SV L K+ D + ++L S
Sbjct: 2 YKFNDSTLLQDALTHSSYSRHNNGPLHLLGVSIIRASVYKHYLAKNRDATKEELEAMSSS 61
Query: 111 TSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVF 170
S+ +CA LGL K++R + V+ AF A+FGAIA+D G D A VF
Sbjct: 62 LSST-TACARRASGLGLDKLIRADAPVDRKSDKVLAVAFHALFGAIAMD-GSADQAMSVF 119
Query: 171 LRVHSGEV 178
++ S V
Sbjct: 120 WKIKSSAV 127
>gi|302816661|ref|XP_002990009.1| hypothetical protein SELMODRAFT_130786 [Selaginella moellendorffii]
gi|300142320|gb|EFJ09022.1| hypothetical protein SELMODRAFT_130786 [Selaginella moellendorffii]
Length = 127
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Query: 51 YTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSE 110
Y F LL+ A+THSS+S NN L +LG +I SV L K+ D + ++L S
Sbjct: 1 YKFNDSTLLQDALTHSSYSRHNNGPLHLLGVSIIRASVYKHYLAKNRDATKEELEAMSSS 60
Query: 111 TSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVF 170
S+ +CA LGL K++R + V+ AF +FGAIA+D G D A VF
Sbjct: 61 LSST-TACARRASGLGLDKLIRADVPVDRKSDKVLAVAFHVLFGAIAMD-GSADQAMSVF 118
Query: 171 LRVHSGEV 178
++ S V
Sbjct: 119 WKIKSSAV 126
>gi|397661499|ref|YP_006502199.1| ribonuclease 3 [Taylorella equigenitalis ATCC 35865]
gi|394349678|gb|AFN35592.1| ribonuclease 3 [Taylorella equigenitalis ATCC 35865]
Length = 222
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQK++ Y+FK I LL RA+TH SFS +N L LG +++ SV+ L K D +
Sbjct: 3 LDELQKKLNYSFKDIKLLNRALTHRSFSSTHNERLEFLGDSILNFSVASLLFKKLKDQAE 62
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
DL R + N + + +L LQ ++++ + P+++ A AIFGAI
Sbjct: 63 GDLTRIRASYVNQDTLAKI-ANNLKLQDLIKLGEGELKSGGFKRPSILADAVEAIFGAIY 121
Query: 158 VDTG 161
+D+
Sbjct: 122 IDSN 125
>gi|319779260|ref|YP_004130173.1| ribonuclease III [Taylorella equigenitalis MCE9]
gi|317109284|gb|ADU92030.1| Ribonuclease III [Taylorella equigenitalis MCE9]
gi|399114574|emb|CCG17368.1| ribonuclease 3 [Taylorella equigenitalis 14/56]
Length = 251
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQK++ Y+FK I LL RA+TH SFS +N L LG +++ SV+ L K D +
Sbjct: 3 LDELQKKLNYSFKDIKLLNRALTHRSFSSTHNERLEFLGDSILNFSVASLLFKKLKDQAE 62
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
DL R + N + + +L LQ ++++ + P+++ A AIFGAI
Sbjct: 63 GDLTRIRASYVNQDTLAKI-ANNLKLQDLIKLGEGELKSGGFKRPSILADAVEAIFGAIY 121
Query: 158 VDTG 161
+D+
Sbjct: 122 IDSN 125
>gi|303256999|ref|ZP_07343013.1| ribonuclease III [Burkholderiales bacterium 1_1_47]
gi|330999188|ref|ZP_08322907.1| ribonuclease III [Parasutterella excrementihominis YIT 11859]
gi|302860490|gb|EFL83567.1| ribonuclease III [Burkholderiales bacterium 1_1_47]
gi|329575388|gb|EGG56932.1| ribonuclease III [Parasutterella excrementihominis YIT 11859]
Length = 228
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+++IGYTFK+ LLRRAMTH SFS E+N L LG V++ + L KD
Sbjct: 4 LTVLEERIGYTFKNKELLRRAMTHRSFSAEHNERLEFLGDSVLNCVIGNALFLKDKHFDE 63
Query: 102 KDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R V +++ EI+ + G+ ++V T P+ + A AIF
Sbjct: 64 GSLSRVRSNLVRQSALAEIAERI-----GISDFLKVGAGEKHTGGNHRPSTIADAVEAIF 118
Query: 154 GAIAVDTGKCDDAGDVFLRVHSGEVGKALP 183
GA+ D G ++A V +R++ + + P
Sbjct: 119 GAVFTDGG-FEEAQTVIIRLYEPMLSQLTP 147
>gi|348589880|ref|YP_004874342.1| ribonuclease III [Taylorella asinigenitalis MCE3]
gi|347973784|gb|AEP36319.1| Ribonuclease III [Taylorella asinigenitalis MCE3]
Length = 251
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L LQK++ Y+FK + LL RA+TH S+S +N L LG +++ SV+ L K D +
Sbjct: 3 LTKLQKKLNYSFKDVQLLNRALTHRSYSSTHNERLEFLGDSILNFSVASILFKKLKDQAE 62
Query: 102 KDLNRRVSETSNVEISCAV-------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL R + N + + D +HLG ++ + P+++ A AIFG
Sbjct: 63 GDLTRIRASYVNQDTLAKIAQNLELPDLIHLGEGELKSGGFRR----PSILADAVEAIFG 118
Query: 155 AIAVDTG 161
AI +D+G
Sbjct: 119 AIYIDSG 125
>gi|322379758|ref|ZP_08054068.1| ribonuclease III [Helicobacter suis HS5]
gi|321147829|gb|EFX42419.1| ribonuclease III [Helicobacter suis HS5]
Length = 224
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTH-SSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
ETLQK++GY FK LL++A+TH S+ + +NN L LG V+D V+ L + D+
Sbjct: 2 FETLQKRLGYVFKDPLLLQQALTHRSTKAHKNNERLEFLGDAVLDLVVAEILFTRFTDLQ 61
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSP----KTNSTVPAVVCGAFRAIFGAI 156
DL++ + N E + + L LQ + +S T P+++ AF A+ GAI
Sbjct: 62 EGDLSKMRASLVN-EKAFFKLALSLNLQDHILISQAEANNNGHTKPSILSSAFEALMGAI 120
Query: 157 AVDTG 161
+++G
Sbjct: 121 YLESG 125
>gi|319941434|ref|ZP_08015762.1| ribonuclease III [Sutterella wadsworthensis 3_1_45B]
gi|319805054|gb|EFW01884.1| ribonuclease III [Sutterella wadsworthensis 3_1_45B]
Length = 226
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 14/142 (9%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+LE L+++IGY F+ LLRRA+TH SF++E+N L LG V++ + L +D +
Sbjct: 3 SLEALEERIGYVFQDKKLLRRAVTHRSFAQEHNERLEFLGDSVLNCVIGYALFLRDKHFN 62
Query: 101 PKDLNR----RVSETSNVEISCAVD---GMHLGLQKVVRVSPKTNSTVPA-VVCGAFRAI 152
+L+R V E + EI+ +D +++G +V KT A ++ A AI
Sbjct: 63 EGELSRVRANLVCEKTLHEIALKIDVSSFLYMGEGEV-----KTGGAHRASILADAMEAI 117
Query: 153 FGAIAVDTGKCDDAGDVFLRVH 174
FGA+ + G D A V L+++
Sbjct: 118 FGAVFREAG-FDTAQRVILKLY 138
>gi|399116563|emb|CCG19370.1| ribonuclease 3 [Taylorella asinigenitalis 14/45]
Length = 251
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L LQK++ Y FK + LL RA+TH S+S +N L LG +++ SV+ L K D +
Sbjct: 3 LTKLQKKLNYLFKDVQLLNRALTHRSYSSTHNERLEFLGDSILNFSVASILFKKLKDQAE 62
Query: 102 KDLNRRVSETSNVEISCAV-------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL R + N + + D +HLG ++ P+++ A AIFG
Sbjct: 63 GDLTRIRASYVNQDTLAKIAQNLELPDLIHLGEGEL----KSGGFRRPSILADAVEAIFG 118
Query: 155 AIAVDTG 161
AI +D+G
Sbjct: 119 AIYIDSG 125
>gi|393758412|ref|ZP_10347233.1| ribonuclease III [Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|393164831|gb|EJC64883.1| ribonuclease III [Alcaligenes faecalis subsp. faecalis NCIB 8687]
Length = 252
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ IGY+FK IGLL +A+TH S S +N L LG V++ +V+ L + I
Sbjct: 4 LALLEAAIGYSFKDIGLLEQALTHRSHSARHNERLEFLGDSVLNFTVAALLFERFQRIDE 63
Query: 102 KDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
DL+R V + + EI+ LGL +R+ + P+++ A AIF
Sbjct: 64 GDLSRLRANLVKQAALAEIAT-----RLGLSDYLRLGEGELKSGGFRRPSILADALEAIF 118
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 119 GAVFLDAG 126
>gi|315453268|ref|YP_004073538.1| ribonuclease III [Helicobacter felis ATCC 49179]
gi|315132320|emb|CBY82948.1| ribonuclease III [Helicobacter felis ATCC 49179]
Length = 225
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTH-SSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE LQ+++ Y F+ + LL++A+TH S+ + NN L LG V+D V+ L + D+
Sbjct: 2 LEKLQERLAYHFQDMNLLQQALTHKSTKTPHNNERLEFLGDAVLDLVVAEILYARFADLQ 61
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSP----KTNSTVPAVVCGAFRAIFGAI 156
DL++ + N + + L LQ + +SP T P+++ AF A+ GAI
Sbjct: 62 EGDLSKMRASLVNEKAFFKLASF-LQLQDCILISPAEANNHGHTKPSILANAFEALMGAI 120
Query: 157 AVDTG 161
+++G
Sbjct: 121 YLESG 125
>gi|424776467|ref|ZP_18203448.1| ribonuclease III [Alcaligenes sp. HPC1271]
gi|422888287|gb|EKU30676.1| ribonuclease III [Alcaligenes sp. HPC1271]
Length = 252
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ IGY+FK GLL +A+TH S S +N L LG V++ +V+ L ++ I
Sbjct: 4 LALLEAAIGYSFKDTGLLEQALTHRSHSARHNERLEFLGDSVLNFTVAALLFDRFQRIDE 63
Query: 102 KDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
DL+R V + + EI+ LGL +R+ + P+++ A AIF
Sbjct: 64 GDLSRLRANLVKQAALAEIAT-----RLGLSDYLRLGEGELKSGGFRRPSILADALEAIF 118
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 119 GAVFLDAG 126
>gi|255027417|ref|ZP_05299403.1| ribonuclease III [Listeria monocytogenes FSL J2-003]
Length = 151
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ FK + LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + AV K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|422348497|ref|ZP_16429390.1| ribonuclease III [Sutterella wadsworthensis 2_1_59BFAA]
gi|404659251|gb|EKB32104.1| ribonuclease III [Sutterella wadsworthensis 2_1_59BFAA]
Length = 234
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+++IGY F LL RA+TH SF+ ++N L LG V++ V L +D +
Sbjct: 4 LSILEERIGYKFADRKLLERAVTHRSFAAQHNERLEFLGDSVLNCVVGYALFQRDKHFTE 63
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
DL+ RV E + AV + + +R+ T P++ A AIFGA+
Sbjct: 64 GDLS-RVRANLVCERTLAVIAKQIDVSAFLRMGEGEMKTGGAHRPSITADAMEAIFGAVF 122
Query: 158 VDTG 161
++G
Sbjct: 123 AESG 126
>gi|339443141|ref|YP_004709146.1| hypothetical protein CXIVA_20770 [Clostridium sp. SY8519]
gi|338902542|dbj|BAK48044.1| hypothetical protein CXIVA_20770 [Clostridium sp. SY8519]
Length = 230
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
LE LQ++I Y F+ GLLR+A+THSS++ E +N L LG V++ S L +
Sbjct: 4 LEELQEKINYRFQQEGLLRQALTHSSYANEKHMKKRSDNERLEFLGDAVLELVSSDWLYS 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
+ D+ +L ++ V E S +S +D G +L L K ++ P+V+ AF
Sbjct: 64 RYTDVPEGELTKKRASIVCEPSLAFLSRKIDLGRYLFLGKGEDLTGGRRR--PSVLSDAF 121
Query: 150 RAIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 122 EAVIGAIYLDGG 133
>gi|291613749|ref|YP_003523906.1| ribonuclease III [Sideroxydans lithotrophicus ES-1]
gi|291583861|gb|ADE11519.1| ribonuclease III [Sideroxydans lithotrophicus ES-1]
Length = 224
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 47 KQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNR 106
K++GY F LL+RA+TH S+S +N L LG V++ +++ L + D+ DL+R
Sbjct: 8 KRLGYQFLQPQLLQRALTHRSYSAAHNERLEFLGDSVLNCAIAKYLYDTYPDLPEGDLSR 67
Query: 107 RVSETSNVE-ISCAVDGMHLGLQKVVRVSPKTNSTV--PAVVCGAFRAIFGAIAVDTG 161
S N + ++ ++LG Q ++ + ++ P+++ A A+FGA+ +D G
Sbjct: 68 LRSNLVNQQTLAILAQQLNLGEQLLLGEGERKSAGFRRPSILADALEALFGAVLLDAG 125
>gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e]
gi|386050782|ref|YP_005968773.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404284301|ref|YP_006685198.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|405758856|ref|YP_006688132.1| ribonuclease III [Listeria monocytogenes SLCC2479]
gi|22654060|sp|Q8Y691.1|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e]
gi|346424628|gb|AEO26153.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404233803|emb|CBY55206.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|404236738|emb|CBY58140.1| ribonuclease III [Listeria monocytogenes SLCC2479]
Length = 229
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ FK++ LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + AV K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|386044113|ref|YP_005962918.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|386054060|ref|YP_005971618.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404411106|ref|YP_006696694.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|345537347|gb|AEO06787.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|346646711|gb|AEO39336.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404230932|emb|CBY52336.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|441471562|emb|CCQ21317.1| Ribonuclease 3 [Listeria monocytogenes]
gi|441474693|emb|CCQ24447.1| Ribonuclease 3 [Listeria monocytogenes N53-1]
Length = 229
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ FK++ LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + AV K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|120609884|ref|YP_969562.1| ribonuclease III [Acidovorax citrulli AAC00-1]
gi|120588348|gb|ABM31788.1| RNAse III [Acidovorax citrulli AAC00-1]
Length = 228
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 10/133 (7%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L LQ ++ + F LL+RA TH SFS ++N L LG V++ +VS L + D+
Sbjct: 5 SLSALQDRLQHVFSDPSLLQRATTHRSFSADHNERLEFLGDSVLNLAVSSLLYQRLRDLP 64
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQ--KVVRVSPKTNST----VPAVVCGAFRAIFG 154
DL+R +N+ A+ + LGLQ +V+R+ + P+++ A A+ G
Sbjct: 65 EGDLSR---VRANLVRQEALHSLALGLQLPQVLRLGEGETKSGGKQRPSILADALEALIG 121
Query: 155 AIAVDTG-KCDDA 166
A+ +D G +C +A
Sbjct: 122 AVYLDAGYQCAEA 134
>gi|326316027|ref|YP_004233699.1| ribonuclease 3 [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323372863|gb|ADX45132.1| Ribonuclease 3 [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 228
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 10/133 (7%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L LQ ++ + F LL+RA+TH SFS ++N L LG V+ +VS L + D+
Sbjct: 5 SLSALQDRLQHAFSDPSLLQRAITHRSFSADHNERLEFLGDSVLSLAVSSLLYQRLRDLP 64
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQ--KVVRVSP-KTNS---TVPAVVCGAFRAIFG 154
DL+R +N+ A+ + LGLQ +V+R+ +T S P+++ A A+ G
Sbjct: 65 EGDLSR---VRANLVRQEALHDLALGLQLPQVLRLGEGETKSGGKQRPSILADALEALIG 121
Query: 155 AIAVDTG-KCDDA 166
A+ +D G +C +A
Sbjct: 122 AVYLDAGYQCAEA 134
>gi|254993548|ref|ZP_05275738.1| ribonuclease III [Listeria monocytogenes FSL J2-064]
Length = 206
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ FK + LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + AV K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|390941207|ref|YP_006404944.1| ribonuclease III [Sulfurospirillum barnesii SES-3]
gi|390194314|gb|AFL69369.1| ribonuclease III [Sulfurospirillum barnesii SES-3]
Length = 227
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE-ENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE LQK++GY FK+ L+ A+TH S + NN L LG V+D V L ++ +++
Sbjct: 5 LEALQKRLGYQFKNQNLIIEALTHKSSKQPYNNERLEFLGDAVLDLIVGEYLYHEFTEVA 64
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIA 157
+L++ R S + +HLG + ++ + N+ P+++ AF AI GA+
Sbjct: 65 EGELSKLRASLVNEKSFEKLARLLHLGESIYISLAEENNNGREKPSLLSNAFEAIMGALY 124
Query: 158 VDTG 161
++ G
Sbjct: 125 LEAG 128
>gi|429462662|ref|YP_007184125.1| ribonuclease III [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
gi|451811582|ref|YP_007448037.1| ribonuclease III [Candidatus Kinetoplastibacterium crithidii
TCC036E]
gi|429338176|gb|AFZ82599.1| ribonuclease III [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
gi|451776740|gb|AGF47739.1| ribonuclease III [Candidatus Kinetoplastibacterium crithidii
TCC036E]
Length = 234
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+K + Y F I LL A+TH S+S +N L LG +++ S+++ L NK IDI
Sbjct: 3 LSNLEKSLRYYFNDISLLELALTHRSYSSNHNERLEFLGDSILNASITIILFNKFIDIDE 62
Query: 102 KDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVS----PKTNSTVPAVVCGAFRAIF 153
L+R V + S ++I+ L + +++ S P+++ + AIF
Sbjct: 63 GVLSRLRASLVQQNSLIKIANK-----LNISNYIKLGDGEIKSGGSRRPSILADSIEAIF 117
Query: 154 GAIAVDTG 161
GAI D+G
Sbjct: 118 GAIFQDSG 125
>gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818]
gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|386008577|ref|YP_005926855.1| ribonuclease III [Listeria monocytogenes L99]
gi|386027184|ref|YP_005947960.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|386047457|ref|YP_005965789.1| ribonuclease III [Listeria monocytogenes J0161]
gi|404408249|ref|YP_006690964.1| ribonuclease III [Listeria monocytogenes SLCC2376]
gi|404413884|ref|YP_006699471.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|422410046|ref|ZP_16487007.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|422809886|ref|ZP_16858297.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|254807893|sp|B8DDU8.1|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818]
gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99]
gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|336023765|gb|AEH92902.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|345534448|gb|AEO03889.1| ribonuclease III [Listeria monocytogenes J0161]
gi|378751550|gb|EHY62138.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|404239583|emb|CBY60984.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|404242398|emb|CBY63798.1| ribonuclease III [Listeria monocytogenes SLCC2376]
Length = 229
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ FK + LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + AV K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|386732545|ref|YP_006206041.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281417|ref|YP_006682315.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404287234|ref|YP_006693820.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750156|ref|YP_006673622.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|405753031|ref|YP_006676496.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|405755965|ref|YP_006679429.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|406704588|ref|YP_006754942.1| ribonuclease III [Listeria monocytogenes L312]
gi|417317908|ref|ZP_12104509.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|424714681|ref|YP_007015396.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
gi|424823566|ref|ZP_18248579.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|73917580|sp|Q71YL2.1|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|259491903|sp|C1KWA4.1|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|384391303|gb|AFH80373.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219356|emb|CBY70720.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|404222231|emb|CBY73594.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|404225165|emb|CBY76527.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|404228052|emb|CBY49457.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404246163|emb|CBY04388.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361618|emb|CBY67891.1| ribonuclease III [Listeria monocytogenes L312]
gi|424013865|emb|CCO64405.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
Length = 229
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ FK + LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + AV K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|421881985|ref|ZP_16313281.1| Ribonuclease III [Helicobacter bizzozeronii CCUG 35545]
gi|375315857|emb|CCF81277.1| Ribonuclease III [Helicobacter bizzozeronii CCUG 35545]
Length = 223
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTH-SSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
L+TLQ+ +GY FK LL++A+TH S+ + +NN L LG V+D V+ L + D+
Sbjct: 2 LQTLQECLGYVFKDPDLLQQALTHRSAKAHKNNERLEFLGDAVLDLVVAEILFARFGDLQ 61
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSP----KTNSTVPAVVCGAFRAIFGAI 156
DL++ + N E + + L LQ + +S T P+++ AF A+ GAI
Sbjct: 62 EGDLSKMRASLVN-EKAFFKLALLLNLQDHILISAAEANNHGHTKPSILASAFEALMGAI 120
Query: 157 AVDTG 161
+++G
Sbjct: 121 YLESG 125
>gi|336452822|ref|YP_004607288.1| ribonuclease III [Helicobacter bizzozeronii CIII-1]
gi|335332849|emb|CCB79576.1| ribonuclease III [Helicobacter bizzozeronii CIII-1]
Length = 223
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTH-SSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
L+TLQ+ +GY FK LL++A+TH S+ + +NN L LG V+D V+ L + D+
Sbjct: 2 LQTLQECLGYAFKDPDLLQQALTHRSAKAHKNNERLEFLGDAVLDLVVAEILFARFGDLQ 61
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSP----KTNSTVPAVVCGAFRAIFGAI 156
DL++ + N E + + L LQ + +S T P+++ AF A+ GAI
Sbjct: 62 EGDLSKMRASLVN-EKAFFKLALLLNLQDHILISAAEANNHGHTKPSILASAFEALMGAI 120
Query: 157 AVDTG 161
+++G
Sbjct: 121 YLESG 125
>gi|126178317|ref|YP_001046282.1| ribonuclease III [Methanoculleus marisnigri JR1]
gi|125861111|gb|ABN56300.1| RNAse III [Methanoculleus marisnigri JR1]
Length = 258
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 17/137 (12%)
Query: 55 SIGLLRRAMTHSSFSE---------ENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLN 105
+I L RA+TH S++ E+N L LG YV+D ++ L + D+ P ++N
Sbjct: 53 AIPLYDRALTHRSYANHGEYPAETFEDNERLEFLGNYVLDFVIADHLYG-EYDLPPGEMN 111
Query: 106 RRVSETSNVEISCAVDGMHLGLQKVVRV--SPKTNSTVPAVVCGAFRAIFGAIAVDTGKC 163
RR+ T N +++ V LG+ VR P T+S +V AF A+ GAI +D G
Sbjct: 112 RRLQVTRNTKLAEIVRRQGLGIDGAVRRRGQPPTDS----IVADAFEALIGAIYLDRG-L 166
Query: 164 DDAGDVFLRVHSGEVGK 180
A DV L + E+ +
Sbjct: 167 GVARDVVLAIFEEEIAE 183
>gi|417315456|ref|ZP_12102132.1| ribonuclease III [Listeria monocytogenes J1816]
gi|328466160|gb|EGF37317.1| ribonuclease III [Listeria monocytogenes J1816]
Length = 222
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ FK + LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + AV K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|149194957|ref|ZP_01872050.1| ribonuclease III [Caminibacter mediatlanticus TB-2]
gi|149134878|gb|EDM23361.1| ribonuclease III [Caminibacter mediatlanticus TB-2]
Length = 227
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 13/149 (8%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDISP 101
E LQK +GY FK L+ A+TH S+S+E NN L LG V+D V L N + P
Sbjct: 4 EELQKSLGYQFKDEKLITEALTHRSYSKEFNNERLEYLGDAVLDLIVGEYLYN----LFP 59
Query: 102 KDLNRRVSETSNV---EISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFG 154
K +S+ E S L L K + +SP + P+++ AF A+ G
Sbjct: 60 KAEEGILSKLRAALVNEESFDKLAKRLNLGKYLFLSPAEENNKGREKPSILSSAFEALIG 119
Query: 155 AIAVDTGKCDDAGDVFLRVHSGEVGKALP 183
A+ ++ G D A ++ L++ E K P
Sbjct: 120 ALYLEAG-FDKAKEIALKLLKEEYPKITP 147
>gi|218132444|ref|ZP_03461248.1| hypothetical protein BACPEC_00303 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992554|gb|EEC58556.1| ribonuclease III [[Bacteroides] pectinophilus ATCC 43243]
Length = 234
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 16/136 (11%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLR 91
+T L LQ+ +GY+F + LL+ A+THSS++ E NN L LG V++ S
Sbjct: 10 STDLNELQQAMGYSFDDVSLLKHALTHSSYANELRINKTGNNERLEFLGDAVLELVSSEY 69
Query: 92 LLNKDIDISPKDLNR-RVSETSNVEIS-CAVDGMHLGLQKVVRVSPKTNST----VPAVV 145
L N+ D++ L++ R S ++ CA D + LQK + + ++T ++
Sbjct: 70 LFNEHKDVNEGSLSKLRASMVCEPSLAFCARD---ISLQKYIMLGKGEDATGGRQRDSIT 126
Query: 146 CGAFRAIFGAIAVDTG 161
A A+ GAI +D G
Sbjct: 127 SDALEAVIGAIYLDGG 142
>gi|408906224|emb|CCM11713.1| Ribonuclease III [Helicobacter heilmannii ASB1.4]
Length = 222
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 49 IGYTFKSIGLLRRAMTH-SSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRR 107
+ Y FK+ GLL++A+TH S+ S NN L LG V+D +V+ L + D+ DL++
Sbjct: 7 LNYHFKNDGLLQQALTHRSTQSPTNNERLEFLGDAVLDLAVAEILFERFKDLQEGDLSKM 66
Query: 108 VSETSNVEISCAVDGMHLGLQKVVRVSP----KTNSTVPAVVCGAFRAIFGAIAVDTG 161
+ N E + + L LQK + VSP + P+++ AF A+ G I +++G
Sbjct: 67 RASLVN-EKAFHKLALLLDLQKHIVVSPAEAHNQGQSKPSILSSAFEALMGVIYLESG 123
>gi|337280491|ref|YP_004619963.1| ribonuclease III (RNase III) [Ramlibacter tataouinensis TTB310]
gi|334731568|gb|AEG93944.1| candidate ribonuclease III (RNase III) [Ramlibacter tataouinensis
TTB310]
Length = 230
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 5/130 (3%)
Query: 36 SPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNK 95
+P A AL LQ+++ + F+ LL A+TH SFS E+N L LG V++ +V+ L +
Sbjct: 2 NPSAPALAALQERLQHRFQDPRLLALALTHRSFSAEHNERLEFLGDSVLNLAVAGLLYER 61
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRA 151
D+ +L+ RV + + + LGL +V+R+ S P+++ A A
Sbjct: 62 LKDLPEGELS-RVRANLVKQDTLHQLAVRLGLPEVIRLGEGEIRSGGSKRPSILADALEA 120
Query: 152 IFGAIAVDTG 161
+ GA+ +D G
Sbjct: 121 VVGAVHLDAG 130
>gi|406974672|gb|EKD97675.1| hypothetical protein ACD_23C00782G0001, partial [uncultured
bacterium]
Length = 189
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
AL LQ ++ YTF + LL+RA+TH SFS ++N L LG V++ +V+ L + D+
Sbjct: 4 ALLALQTRLQYTFSNASLLQRAITHRSFSADHNERLEFLGDSVLNLAVASLLYQRLSDLP 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQ--KVVRV----SPKTNSTVPAVVCGAFRAIFG 154
DL+R +N+ + + L LQ V+R+ S P+++ A A+ G
Sbjct: 64 EGDLSR---VRANLVKQDTLHQLALRLQVSDVLRLGEGESKSGGQQRPSILADALEALIG 120
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 121 AVYLDAG 127
>gi|237746716|ref|ZP_04577196.1| ribonuclease III [Oxalobacter formigenes HOxBLS]
gi|229378067|gb|EEO28158.1| ribonuclease III [Oxalobacter formigenes HOxBLS]
Length = 273
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ +IGYTF LL AMTH S+S +N L LG +++ ++ L + ++
Sbjct: 9 LKMLQDRIGYTFHDAALLETAMTHRSYSSHHNERLEFLGDSLLNCVTAINLYERYAALNE 68
Query: 102 KDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIF 153
L+R V + + EI+C ++ L + +R+ P+++ A A+F
Sbjct: 69 GSLSRLRSSLVRQQALYEIACKLE-----LSRFLRLGEGELKAGGFKRPSILADAMEALF 123
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 124 GAVFLDAG 131
>gi|255017842|ref|ZP_05289968.1| ribonuclease III [Listeria monocytogenes FSL F2-515]
Length = 158
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ FK++ LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + AV VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAVH-----FSXYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|268680594|ref|YP_003305025.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946]
gi|268618625|gb|ACZ12990.1| ribonuclease III [Sulfurospirillum deleyianum DSM 6946]
Length = 227
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE LQK++GY FK+ L+ A+TH S + NN L LG V+D V L + + ++
Sbjct: 5 LEALQKRLGYQFKNQNLIIEALTHKSSKQPYNNERLEFLGDAVLDLIVGEYLYKEFLGVA 64
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIA 157
+L++ R S + +HLG + ++ + N+ P+++ AF AI GA+
Sbjct: 65 EGELSKLRASLVNEKSFEKLARLLHLGESIYISLAEENNNGREKPSLLSNAFEAIIGALY 124
Query: 158 VDTG 161
++ G
Sbjct: 125 LEAG 128
>gi|238021755|ref|ZP_04602181.1| hypothetical protein GCWU000324_01658 [Kingella oralis ATCC 51147]
gi|237866369|gb|EEP67411.1| hypothetical protein GCWU000324_01658 [Kingella oralis ATCC 51147]
Length = 239
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 11/133 (8%)
Query: 34 TSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLL 93
T+SP L LQKQ+GYTFK+ LL++A+TH S+ +NN L +G ++D +++ L
Sbjct: 3 TASPRQQHLAHLQKQLGYTFKNPALLQQALTHRSYHAQNNERLEFIGDSILDYAIAKMLY 62
Query: 94 NKDIDISPKDLN----RRVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVC 146
+ + L+ + V E + EI+ + + ++LG ++ + P+++
Sbjct: 63 HAFPKLPEGRLSPLRAQLVKEATLAEIARELHIGNALYLGTGEL----KSGGNDRPSILA 118
Query: 147 GAFRAIFGAIAVD 159
A A+ AI+ D
Sbjct: 119 DAVEALLAAISFD 131
>gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262]
gi|422413349|ref|ZP_16490308.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|423098714|ref|ZP_17086422.1| ribonuclease III [Listeria innocua ATCC 33091]
gi|22654065|sp|Q92AK3.1|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262]
gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|370794541|gb|EHN62304.1| ribonuclease III [Listeria innocua ATCC 33091]
Length = 229
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ F+++ LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + AV K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|422416325|ref|ZP_16493282.1| ribonuclease III [Listeria innocua FSL J1-023]
gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023]
Length = 229
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ F+++ LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + AV K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|383759948|ref|YP_005438934.1| ribonuclease III [Rubrivivax gelatinosus IL144]
gi|381380618|dbj|BAL97435.1| ribonuclease III [Rubrivivax gelatinosus IL144]
Length = 234
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
T + LQ+++G+ F+ GLL RA+TH S+ ++N L LG V++ +VS L +
Sbjct: 3 TRHDALQQRLGHRFERTGLLTRALTHRSWGADHNERLEFLGDSVLNCAVSALLYERFSGS 62
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGA 155
DL RV E S + LGL +V+R+S + P+++ A A+ GA
Sbjct: 63 DEGDLT-RVRAHLVREDSLHRVALTLGLPEVLRMSEGEMRGGGAQRPSILADAVEALIGA 121
Query: 156 IAVDTG 161
I +D G
Sbjct: 122 IFLDGG 127
>gi|74318104|ref|YP_315844.1| ribonuclease III [Thiobacillus denitrificans ATCC 25259]
gi|90101653|sp|Q3SH50.1|RNC_THIDA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|74057599|gb|AAZ98039.1| ribonuclease III [Thiobacillus denitrificans ATCC 25259]
Length = 226
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQ+ +GYTF GLL++A+TH S+ NN L LG V++ SV+ L + D+ L
Sbjct: 10 LQQALGYTFSRSGLLQQALTHRSYGALNNERLEFLGDSVLNCSVARALYDAFPDLPEGSL 69
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + + EI+ A+ D + LG ++ P+++ A ++FGA+
Sbjct: 70 SRLRANLVRQETLAEIAGALRLGDSLRLGEGEL----KSGGFRRPSILADALESLFGAVF 125
Query: 158 VDTGKCDDAGDVFLRV 173
+D G D+A V R+
Sbjct: 126 LDAG-FDEAQRVVRRL 140
>gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120]
gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120]
Length = 229
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ FK + LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K +++ + + V E S VE + AV K VR+ T PA++
Sbjct: 64 KYPEMAEGHMTKMRAAIVCEPSLVEFAEAVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|378824421|ref|ZP_09846919.1| ribonuclease III [Sutterella parvirubra YIT 11816]
gi|378596766|gb|EHY30156.1| ribonuclease III [Sutterella parvirubra YIT 11816]
Length = 231
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 14/142 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ +IGY F+ LLRRA+TH SF++E+N L LG V++ + L +D +
Sbjct: 4 LSMLESRIGYEFRDKKLLRRAVTHRSFAQEHNERLEFLGDSVLNCVIGYALFLRDRHFTE 63
Query: 102 KDLNR----RVSETSNVEISCAVD---GMHLGLQKVVRVSPKTNSTVPA-VVCGAFRAIF 153
+L+R V E + +++ +D + +G ++ KT A ++ A AIF
Sbjct: 64 GELSRVRANLVCEKTLHDLALTLDLSSFLFMGEGEL-----KTGGARRASILADAMEAIF 118
Query: 154 GAIAVDTGKCDDAGDVFLRVHS 175
GA+ + G ++A V LRV+
Sbjct: 119 GAVFFEAG-FEEAQKVVLRVYE 139
>gi|320161647|ref|YP_004174872.1| ribonuclease III [Anaerolinea thermophila UNI-1]
gi|319995501|dbj|BAJ64272.1| ribonuclease III [Anaerolinea thermophila UNI-1]
Length = 237
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 34 TSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF------SEENNRALGILGGYVIDTS 87
+ A + + ++G +FKS LL RA+TH S+ + E+N L LG V+D
Sbjct: 2 NENALAESPQEFANRLGLSFKSFFLLSRALTHRSYLNEHPEAIEDNERLEFLGDAVLDFV 61
Query: 88 VSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNST--- 140
V L N+ D+ DL R VS E + VD L + +R+
Sbjct: 62 VGAWLYNRYPDMPEGDLTRMRSVLVSTEQLSEFARKVD-----LGRALRLGKGETQAGGR 116
Query: 141 -VPAVVCGAFRAIFGAIAVDTG 161
PA++C AF A+ GAI +D+G
Sbjct: 117 DRPALLCDAFEAVIGAIYLDSG 138
>gi|237748853|ref|ZP_04579333.1| ribonuclease III [Oxalobacter formigenes OXCC13]
gi|229380215|gb|EEO30306.1| ribonuclease III [Oxalobacter formigenes OXCC13]
Length = 277
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 11/123 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQ++IGY+F+ I LL+ A+TH SFS +N L LG +++ ++ L + ++++ +L
Sbjct: 17 LQERIGYSFRQIDLLQTALTHRSFSSHHNERLEFLGDSLLNCVTAINLYERYVELNEGNL 76
Query: 105 NR----RVSETSNVEISCAVDG---MHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + + EI+ +D + LG ++ K P+++ A A+FGAI
Sbjct: 77 SRLRSSLVRQQALYEIAQKLDMSSFLRLGEGELKAGGFKR----PSILADAMEALFGAIF 132
Query: 158 VDT 160
+D+
Sbjct: 133 LDS 135
>gi|345875651|ref|ZP_08827442.1| ribonuclease III [Neisseria weaveri LMG 5135]
gi|417958288|ref|ZP_12601203.1| ribonuclease III [Neisseria weaveri ATCC 51223]
gi|343966946|gb|EGV35197.1| ribonuclease III [Neisseria weaveri ATCC 51223]
gi|343968726|gb|EGV36950.1| ribonuclease III [Neisseria weaveri LMG 5135]
Length = 239
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
AL +QK++GY+F++ LL +A+TH S+S +NN L +G V+D +V+ L + +
Sbjct: 9 NALAHIQKKLGYSFRNTELLVQALTHRSYSAKNNERLEFIGDAVLDYTVAKMLFDAFPKL 68
Query: 100 SPKDLNRRVSETSNVEI--SCAVDGMHLGLQKVVRVSPKTNSTV--PAVVCGAFRAIFGA 155
S +L+R S N + A++ M++G + + P+++ A A+F A
Sbjct: 69 SEGELSRLRSNLVNEAVLADIAIE-MNIGEALFLGTGELKSGGFRRPSILADAVEALFAA 127
Query: 156 IAVDTGKCDDAGDVFLRVHSGEV 178
+++D +A V R+ SG V
Sbjct: 128 VSLD-ADFSEAESVVRRLFSGRV 149
>gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
gi|123466444|sp|A0AJR0.1|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 229
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ F+ + LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFQDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + A+ K +R+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAIH-----FSKYIRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|410997180|gb|AFV98645.1| hypothetical protein B649_11670 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 226
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE-ENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
L TLQ+++GYTF++ LL A+TH S+ + NN L LG V+D V L +K
Sbjct: 4 LTTLQERLGYTFQNKELLIEALTHKSYKQPYNNERLEFLGDAVLDLIVGEYLYSKFRGYD 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS--PKTNS--TVPAVVCGAFRAIFGAI 156
L++ + N E A+ +HL L + +S + NS T +++ AF A+ GAI
Sbjct: 64 EGKLSKMRASLVNEEGFTAL-ALHLDLGGYIYLSNAEENNSGRTKSSLLSNAFEALMGAI 122
Query: 157 AVDTG 161
++TG
Sbjct: 123 YLETG 127
>gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|422419421|ref|ZP_16496376.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|422422509|ref|ZP_16499462.1| ribonuclease III [Listeria seeligeri FSL S4-171]
gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171]
Length = 230
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ F+ I LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFQDIELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + V K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEVVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|381183950|ref|ZP_09892635.1| ribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380316161|gb|EIA19595.1| ribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 230
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ FK+I LL+ A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFKNIELLQNAFTHSSYVNEHRHENLKDNERLEFLGDAVLELTVSDYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + V K +R+ T PA++
Sbjct: 64 KYPDMAEGQMTKMRAAIVCEPSLVEFAEMVH-----FSKYIRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|350572010|ref|ZP_08940322.1| ribonuclease III [Neisseria wadsworthii 9715]
gi|349790888|gb|EGZ44786.1| ribonuclease III [Neisseria wadsworthii 9715]
Length = 239
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 16/136 (11%)
Query: 31 RFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSL 90
RFKT+ AL+ +++ +GYTF+ LL RA+TH S+S NN +G +++ +V+
Sbjct: 5 RFKTA-----ALDHIERGLGYTFRDRTLLARALTHRSYSANNNERFEFVGDAILNYTVAK 59
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAV-------DGMHLGLQKVVRVSPKTNSTVPA 143
L + +S +L+R + N ++ + DG+ LG ++ P+
Sbjct: 60 MLYDVFAKLSEGELSRLRANLVNQDMLAEIAVGLKVGDGLFLGPGEL----KSGGFNRPS 115
Query: 144 VVCGAFRAIFGAIAVD 159
++ A A+F AI+ D
Sbjct: 116 ILADAMEAMFAAISFD 131
>gi|195952887|ref|YP_002121177.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1]
gi|226741373|sp|B4U7T8.1|RNC_HYDS0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|195932499|gb|ACG57199.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1]
Length = 232
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSE--ENNRALGILGGYVIDTSVSLRLLNKDID 98
+ E L+++IGY FK L+++A TH SFS+ EN L LG D V+ +N ++
Sbjct: 3 SFELLEEKIGYRFKDKNLVKKAFTHISFSKSSENYEVLEFLG----DALVNFMTVNILVE 58
Query: 99 ISPKDLNRRVSETSNVEIS---CAVDGMHLGLQKVVRVSP----KTNSTVPAVVCGAFRA 151
P +S+ + IS A L +K + +S K ++ P+++C F A
Sbjct: 59 AFPNKKEGELSQLKSFLISEEFLASLAKSLNFEKYILISKGEELKGSNKNPSILCDVFEA 118
Query: 152 IFGAIAVDTG 161
+ AI +D+G
Sbjct: 119 FWAAIYIDSG 128
>gi|257093153|ref|YP_003166794.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
gi|257045677|gb|ACV34865.1| Ribonuclease III [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
Length = 223
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 16/148 (10%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L++ +GYTF+ LL+ A+TH S+S +N L LG +++ ++ L + + DL
Sbjct: 6 LERGLGYTFRDRALLQTALTHRSYSSPHNERLEFLGDAILNAVIARSLFERFPTLPEGDL 65
Query: 105 NRRVSETSNVEISCAVDGMH-----LGLQKVVRVSPKTNST----VPAVVCGAFRAIFGA 155
+R ++ DG+H L L +R+ + P+++ A+FGA
Sbjct: 66 SRLRAQL------VRQDGLHQQALALSLGDFLRLGEGEQKSGGQQRPSILADGLEALFGA 119
Query: 156 IAVDTGKCDDAGDVFLRVHSGEVGKALP 183
+ +D G + AG+V R++ + + +P
Sbjct: 120 LWLDAG-FEAAGEVINRLYESMLKQLIP 146
>gi|299821773|ref|ZP_07053661.1| ribonuclease III [Listeria grayi DSM 20601]
gi|299817438|gb|EFI84674.1| ribonuclease III [Listeria grayi DSM 20601]
Length = 230
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+TF+++GLL+ A THSS+ E +N L LG V++ +VS L
Sbjct: 4 WEELQESVGFTFENVGLLQEAFTHSSYVNEHRKEKLNDNERLEFLGDAVLELTVSDYLFQ 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K +++ L + V E S VE + + +H K +R+ T PA++
Sbjct: 64 KYPNLAEGQLTKMRAAIVCEPSLVEFA---ENIHFS--KYIRLGNGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|456063753|ref|YP_007502723.1| Ribonuclease III [beta proteobacterium CB]
gi|455441050|gb|AGG33988.1| Ribonuclease III [beta proteobacterium CB]
Length = 263
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQ Q+GYTFK + LL +A+TH S S++NN L LG +++ V+ L + D+ DL
Sbjct: 12 LQAQLGYTFKKLELLNQALTHRSHSKKNNERLEFLGDSILNCVVAEMLYERYSDLDEGDL 71
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + + EI+ + D + LG ++ + P+++ A+ GAI
Sbjct: 72 SRVRANLVKQQALYEIAQTLSLSDYLRLGEGELKSGGFRR----PSILADTLEAVTGAIF 127
Query: 158 VDTGKCDDAGDVFLR 172
+D G DA LR
Sbjct: 128 LDGGF--DAAKACLR 140
>gi|426403897|ref|YP_007022868.1| ribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
gi|425860565|gb|AFY01601.1| ribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
Length = 234
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSE------ENNRALGILGGYVIDTSVSLRLLNKDI 97
+L++++GY FK LL RA+TH SF+ E+N L LG V+D V L K
Sbjct: 8 SLEERVGYHFKKPALLERALTHKSFANELRNTVEHNEKLEFLGDAVLDLVVGEFLYEKFP 67
Query: 98 DISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIF 153
+ L+++ + N E+ + + +GL K++++ + P ++ +F AI
Sbjct: 68 TDTEGGLSKKRASIVNEEVLSEL-ALEMGLNKLMQLGKGEALTGGAQKPRLIASSFEAIV 126
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 127 GALYLDGG 134
>gi|121595570|ref|YP_987466.1| ribonuclease III [Acidovorax sp. JS42]
gi|120607650|gb|ABM43390.1| RNAse III [Acidovorax sp. JS42]
Length = 228
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 14/135 (10%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
+L TLQ+++ + F LL+RA+TH SFS ++N L LG V+ +VS L + D+
Sbjct: 4 ASLSTLQQRLQHQFSDASLLQRALTHRSFSADHNERLEFLGDSVLSLAVSSLLFRRMRDL 63
Query: 100 SPKDLNR----RVSETSNVEISCAVDGMHLGLQKVVRV---SPKTNSTV-PAVVCGAFRA 151
+L+R V + S +I+ + L L V+R+ K+ + P+++ A A
Sbjct: 64 PEGELSRVRALLVKQDSLHQIA-----VRLQLPPVLRLGEGEAKSGGKLRPSILADALEA 118
Query: 152 IFGAIAVDTG-KCDD 165
I GA+ +D G +C +
Sbjct: 119 IIGAVYLDAGYECAE 133
>gi|222111791|ref|YP_002554055.1| ribonuclease iii [Acidovorax ebreus TPSY]
gi|221731235|gb|ACM34055.1| ribonuclease III [Acidovorax ebreus TPSY]
Length = 228
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 14/135 (10%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
+L TLQ+++ + F LL+RA+TH SFS ++N L LG V+ +VS L + D+
Sbjct: 4 ASLSTLQQRLQHQFSDASLLQRALTHRSFSADHNERLEFLGDSVLSLAVSSLLFRRMRDL 63
Query: 100 SPKDLNR----RVSETSNVEISCAVDGMHLGLQKVVRV---SPKTNSTV-PAVVCGAFRA 151
+L+R V + S +I+ + L L V+R+ K+ + P+++ A A
Sbjct: 64 PEGELSRVRALLVKQDSLHQIA-----VRLQLPPVLRLGEGEAKSGGKLRPSILADALEA 118
Query: 152 IFGAIAVDTG-KCDD 165
I GA+ +D G +C +
Sbjct: 119 IIGAVYLDAGYECAE 133
>gi|358637840|dbj|BAL25137.1| ribonuclease III [Azoarcus sp. KH32C]
Length = 225
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 17/130 (13%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L LQ+ IG+ F+ + LL+RA+TH S+ + NN LG V++ V++ L + ++
Sbjct: 5 LGRLQRAIGHQFQDLALLQRALTHRSYGQPNNERFEFLGDSVLNCVVAIALFERFGELRE 64
Query: 102 KDLNR-RVSETSNVEISCAVDGMH-----LGLQKVVRVSPKT----NSTVPAVVCGAFRA 151
+L+R R S + C DG+H L L + +R+ P+++ A A
Sbjct: 65 GELSRLRAS------LVCQ-DGLHRIARELDLGEYLRLGEGELKSGGHRRPSILADALEA 117
Query: 152 IFGAIAVDTG 161
+F A+ +D G
Sbjct: 118 VFAAVYLDKG 127
>gi|315303706|ref|ZP_07874220.1| ribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627919|gb|EFR96538.1| ribonuclease III [Listeria ivanovii FSL F6-596]
Length = 229
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ F+ + LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFYFEDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + V K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEVVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|302878420|ref|YP_003846984.1| ribonuclease III [Gallionella capsiferriformans ES-2]
gi|302581209|gb|ADL55220.1| ribonuclease III [Gallionella capsiferriformans ES-2]
Length = 229
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L +Q+GY F LL+RA+TH SF+ ++N L LG ++ ++ L ++ D++ DL
Sbjct: 10 LCRQLGYVFIQPQLLQRALTHRSFAPDHNERLEFLGDSILGCVIAKHLYSQHPDLTEGDL 69
Query: 105 NR-RVSETSNVEISCAVDGMHLGLQ-KVVRVSPKTNS-TVPAVVCGAFRAIFGAIAVDTG 161
+R R + + ++LG Q K+ K+ P+++ A A+FGAI +D G
Sbjct: 70 SRLRSNLVKESTLVLFAQQLNLGAQLKLGEGELKSGGHKRPSILADAVEALFGAIFIDGG 129
>gi|347549202|ref|YP_004855530.1| putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
gi|346982273|emb|CBW86267.1| Putative ribonuclease III [Listeria ivanovii subsp. ivanovii PAM
55]
Length = 230
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ F+ + LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFYFEDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + V K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEVVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>gi|152989964|ref|YP_001355686.1| ribonuclease III [Nitratiruptor sp. SB155-2]
gi|189043328|sp|A6Q1H0.1|RNC_NITSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|151421825|dbj|BAF69329.1| ribonuclease III [Nitratiruptor sp. SB155-2]
Length = 226
Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSF-SEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE +K++GY+F+ LL+ A+TH S+ S NN L LG V+D V L K +
Sbjct: 4 LEEFEKKLGYSFEDKKLLKEALTHKSYKSPVNNERLEFLGDAVLDLVVGEYLFKKFPKAN 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIA 157
+L++ R S + + + +G + + + N T P+++ AF A+ GAI
Sbjct: 64 EGELSKLRASLVNEEGFAKLAQKLDIGKYIFISQAEENNQGRTKPSLLSNAFEAVMGAIY 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEKG 127
>gi|395763037|ref|ZP_10443706.1| RNase III, ds RNA (partial match) [Janthinobacterium lividum PAMC
25724]
Length = 271
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 15/140 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ ++GYTF+ GLL++A+TH S S +N L LG +++ V+ L + I
Sbjct: 3 LQLLQNRLGYTFQDAGLLQQALTHRSHSSLHNERLEFLGDSILNCVVASILYERFKSIDE 62
Query: 102 KDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
DL+R V + S EI+ ++ L + +R+ + P+++ A+
Sbjct: 63 GDLSRLRANLVKQQSLYEIAQTLE-----LSQFLRLGEGELKSGGFRRPSILADTLEALL 117
Query: 154 GAIAVDTGKCDDAGDVFLRV 173
GAI +DTG DA + +R
Sbjct: 118 GAIFLDTGF--DAASMVIRA 135
>gi|145588593|ref|YP_001155190.1| ribonuclease III [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145046999|gb|ABP33626.1| RNAse III [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 263
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 12/139 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
TLQ+++GY FK LL +A+TH S S++NN L LG +++ V+ L + D+ D
Sbjct: 11 TLQERLGYVFKKTELLNQALTHRSHSKKNNERLEFLGDSILNCVVADLLYERYSDLDEGD 70
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V + + EI+ + D + LG ++ + P+++ A+ GAI
Sbjct: 71 LSRVRANLVKQQALYEIAQTLLLSDHLRLGEGELKSGGFRR----PSILADTLEAVTGAI 126
Query: 157 AVDTGKCDDAGDVFLRVHS 175
+D G D A D +++S
Sbjct: 127 FLDGG-FDAAKDCLRKLYS 144
>gi|298369788|ref|ZP_06981104.1| ribonuclease III [Neisseria sp. oral taxon 014 str. F0314]
gi|298281248|gb|EFI22737.1| ribonuclease III [Neisseria sp. oral taxon 014 str. F0314]
Length = 302
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 85/168 (50%), Gaps = 15/168 (8%)
Query: 4 RPFTLYLLPVLVIAISSSFQVRA---ANDQRFKTSSPFATALETLQKQIGYTFKSIGLLR 60
RP+ L P + + + +S + R+ A + K A + +Q+++G+ F I LL+
Sbjct: 34 RPYHL-ASPKVFLYLRASAETRSGCFAESRDMKPDLVRQQAHQAIQRRLGHKFVRIELLQ 92
Query: 61 RAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNR----RVSETSNVEI 116
+A+TH SF+ +NN +G +++ S++ L + ++ +L+R V+E EI
Sbjct: 93 QALTHRSFNAKNNERFEFVGDAILNYSIAKMLFDAFPKLTEGELSRLRANLVNEHVLAEI 152
Query: 117 SCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
+ + DG++LG ++ P+++ A A+F A++ D G
Sbjct: 153 ALEMNIGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAVSFDAG 196
>gi|197105333|ref|YP_002130710.1| ribonuclease III [Phenylobacterium zucineum HLK1]
gi|238690159|sp|B4RCU4.1|RNC_PHEZH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|196478753|gb|ACG78281.1| ribonuclease III [Phenylobacterium zucineum HLK1]
Length = 238
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-----ENNRALGILGGYVIDTSVSLRLL 93
A A+ L+++IGY F LL RA+TH+S + +N L LG V++ + RL+
Sbjct: 5 AAAVAELERRIGYVFTDRDLLERALTHASVGDGARAVRHNERLEFLGDRVLNLCAAERLM 64
Query: 94 NKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVCGAF 149
D D +++R ++ N +CA GLQ+ +R+S AV+ A
Sbjct: 65 ALDPDAREGEMSRLLASLVNYH-ACARAAKRAGLQEALRLSASATKVGARKSDAVLGDAC 123
Query: 150 RAIFGAIAVDTG 161
A+ A+ +D G
Sbjct: 124 EALIAALYIDGG 135
>gi|124265843|ref|YP_001019847.1| ribonuclease III [Methylibium petroleiphilum PM1]
gi|124258618|gb|ABM93612.1| Ribonuclease III [Methylibium petroleiphilum PM1]
Length = 248
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 36 SPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNK 95
S A ++LQ ++G+ F +GLL RA+TH SF +NN L LG V+ ++S L
Sbjct: 17 SDIPAAFDSLQVRLGHRFAQVGLLGRALTHKSFGADNNERLEFLGDAVLSAAISGLLFEH 76
Query: 96 DIDISPKDLNRRVSETSNVEI--SCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAF 149
DL R + E+ A+D LGL ++R+S + P+++ A
Sbjct: 77 FGQSGEGDLTRVRAHLVREEMLHRLALD---LGLPALLRLSEGEARSGGARRPSILADAV 133
Query: 150 RAIFGAIAVDTG 161
A+ A+ +D G
Sbjct: 134 EALIAAVYLDGG 145
>gi|332525373|ref|ZP_08401536.1| ribonuclease III [Rubrivivax benzoatilyticus JA2]
gi|332108645|gb|EGJ09869.1| ribonuclease III [Rubrivivax benzoatilyticus JA2]
Length = 241
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
+ LQ+++G+ F L+ RA+TH S+ E+N L LG V++ +VS L +
Sbjct: 6 DALQQRLGHRFTRTALMTRALTHRSWGAEHNERLEFLGDSVLNCAVSALLYERFSGSDEG 65
Query: 103 DLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGAIAV 158
DL RV E S + LGL +V+R+S + P+++ A A+ GAI +
Sbjct: 66 DLT-RVRAHLVREDSLHRVALTLGLSEVLRMSEGEMRGGGAQRPSILADAVEALIGAIFL 124
Query: 159 DTG 161
D G
Sbjct: 125 DGG 127
>gi|397780698|ref|YP_006545171.1| ribonuclease III [Methanoculleus bourgensis MS2]
gi|396939200|emb|CCJ36455.1| ribonuclease III [Methanoculleus bourgensis MS2]
Length = 275
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 55 SIGLLRRAMTHSSFSE---------ENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLN 105
++ L +A+TH S++ E+N L LG YV+D ++ + + D+ P ++N
Sbjct: 70 ALNLYDQALTHRSYANGGEYPVAAVEDNERLEFLGNYVLDFIIADHIYDA-YDLPPGEMN 128
Query: 106 RRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTGKCDD 165
RR+ T N +++ V LG+ +R K + +++ AF A+ GAI +D G D
Sbjct: 129 RRLQVTRNTKLADIVLEQGLGIDGAIR--RKGQALTDSIIADAFEALIGAIFLDRG-LDV 185
Query: 166 AGDVFLRVHSGEVGK 180
A +V L + E+ +
Sbjct: 186 AREVVLAIFEDEIAE 200
>gi|225075386|ref|ZP_03718585.1| hypothetical protein NEIFLAOT_00391 [Neisseria flavescens
NRL30031/H210]
gi|224953204|gb|EEG34413.1| hypothetical protein NEIFLAOT_00391 [Neisseria flavescens
NRL30031/H210]
Length = 239
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 70/128 (54%), Gaps = 11/128 (8%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
A ++QK++GY F+++ LL++A+TH S++ ++N +G +++ SV+ L + +
Sbjct: 9 QAHRSIQKRLGYEFRNMELLQQALTHRSYNAKHNERFEFVGDSILNYSVARMLFDAFPKL 68
Query: 100 SPKDLNRR----VSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAI 152
S +L+R V+E EI+ + DG++LG ++ P+++ A A+
Sbjct: 69 SEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAM 124
Query: 153 FGAIAVDT 160
F A++ D
Sbjct: 125 FAAVSFDA 132
>gi|452943710|ref|YP_007499875.1| ribonuclease III [Hydrogenobaculum sp. HO]
gi|452882128|gb|AGG14832.1| ribonuclease III [Hydrogenobaculum sp. HO]
Length = 232
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSE--ENNRALGILGGYVIDTSVSLRLLNKDID 98
+ E L+++IGY F+ L+++A TH SFS+ EN L LG D V+ +N ++
Sbjct: 3 SFELLEEKIGYRFRDKNLVKKAFTHISFSKSSENYEVLEFLG----DALVNFMTVNILVE 58
Query: 99 ISPKDLNRRVSETSNVEIS---CAVDGMHLGLQKVVRVSP----KTNSTVPAVVCGAFRA 151
P +S+ + IS A L +K + +S K ++ P+++C F A
Sbjct: 59 AFPNKKEGELSQLKSFLISEEFLASLAKSLNFEKYILISKGEELKGSNKNPSILCDVFEA 118
Query: 152 IFGAIAVDTG 161
+ AI +D+G
Sbjct: 119 FWAAIYIDSG 128
>gi|444366073|ref|ZP_21166170.1| ribonuclease III, partial [Burkholderia cenocepacia K56-2Valvano]
gi|443605209|gb|ELT73074.1| ribonuclease III, partial [Burkholderia cenocepacia K56-2Valvano]
Length = 273
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ + P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRR----PSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|42523419|ref|NP_968799.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
gi|81617308|sp|Q6MLR5.1|RNC_BDEBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|39575625|emb|CAE79792.1| ribonuclease III [Bdellovibrio bacteriovorus HD100]
Length = 234
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 11/128 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSE------ENNRALGILGGYVIDTSVSLRLLNKDI 97
+L++++G+ FK+ LL RA+TH SF+ E+N L LG V+D V L K
Sbjct: 8 SLEERVGHQFKNPALLERALTHKSFANELRNTVEHNEKLEFLGDAVLDLVVGEFLYEKFP 67
Query: 98 DISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIF 153
+ L+++ + N E+ + + +GL K++++ + P ++ +F AI
Sbjct: 68 TDTEGGLSKKRASIVNEEVLSEL-ALEMGLNKLMQLGKGEALTGGAQKPRLIASSFEAIV 126
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 127 GALYLDGG 134
>gi|347819050|ref|ZP_08872484.1| ribonuclease III [Verminephrobacter aporrectodeae subsp.
tuberculatae At4]
Length = 228
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
+ AL LQ+++ + F LL RA+TH SFS +NN L LG V++ +V+ L +
Sbjct: 1 MSAALLALQERLQHVFSDPRLLERAITHRSFSADNNERLEFLGDAVLNLAVASLLYQRLP 60
Query: 98 DISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRV----SPKTNST---VPAVVCGAFR 150
+ DL+R + + S + L L + +R+ SP+ S P+++ A
Sbjct: 61 SLPEGDLSRMRANLVKQD-SLHQLALRLRLSEALRLGEGESPRAGSARRPSPSILADALE 119
Query: 151 AIFGAIAVDTG 161
A+ GA+ +D G
Sbjct: 120 ALIGAVYLDAG 130
>gi|291542641|emb|CBL15751.1| RNAse III [Ruminococcus bromii L2-63]
Length = 225
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
+E LQK+IGYTFK+ LL A+THSS++ E+ N L LG V+ VS +
Sbjct: 1 MEDLQKRIGYTFKNTDLLTEALTHSSYANEHKAKHIKYNERLEFLGDAVLSIVVSDYIFK 60
Query: 95 KDIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
++ +L + V E + E + ++ G +L L K R + + P+++ AF
Sbjct: 61 HCPELPEGELTKLRASLVCEKTLFEFAKQIELGKYLVLSKGERNN--GGAERPSILSDAF 118
Query: 150 RAIFGAIAVDTG 161
A+ AI +D G
Sbjct: 119 EALIAAIYIDGG 130
>gi|241763850|ref|ZP_04761895.1| Ribonuclease III [Acidovorax delafieldii 2AN]
gi|241366894|gb|EER61308.1| Ribonuclease III [Acidovorax delafieldii 2AN]
Length = 227
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 9/127 (7%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
AL LQ ++ + F + LL+RA+TH SFS ++N L LG V++ +V+ L + D+
Sbjct: 4 ALSALQDRLQHHFSNASLLQRAITHRSFSADHNERLEFLGDSVLNLAVASLLYQRLSDLP 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQ--KVVRV----SPKTNSTVPAVVCGAFRAIFG 154
DL+R +N+ + + L LQ V+R+ S P+++ A A+ G
Sbjct: 64 EGDLSR---VRANLVKQDTLHQLALRLQVSDVLRLGEGESKSGGQNRPSILADALEALIG 120
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 121 AVYLDAG 127
>gi|402567143|ref|YP_006616488.1| ribonuclease III [Burkholderia cepacia GG4]
gi|402248340|gb|AFQ48794.1| ribonuclease III [Burkholderia cepacia GG4]
Length = 408
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFSKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|415924421|ref|ZP_11554856.1| Ribonuclease III, partial [Herbaspirillum frisingense GSF30]
gi|407760385|gb|EKF69694.1| Ribonuclease III, partial [Herbaspirillum frisingense GSF30]
Length = 220
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
+ LQ+++G+TFK LL++A+TH S S +N L LG V++ V+ L + I
Sbjct: 4 QLLQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKIDEG 63
Query: 103 DLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFG 154
DL+R V + S EI+ L L + +R+ + P+++ A+FG
Sbjct: 64 DLSRLRANLVKQQSLYEIA-----QRLELSQFLRLGEGELKSGGFRRPSILADTLEALFG 118
Query: 155 AIAVDTG 161
AI +D+G
Sbjct: 119 AIFLDSG 125
>gi|319639176|ref|ZP_07993927.1| ribonuclease 3 [Neisseria mucosa C102]
gi|317399360|gb|EFV80030.1| ribonuclease 3 [Neisseria mucosa C102]
Length = 239
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 69/128 (53%), Gaps = 11/128 (8%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
A +QK++GY F+++ LL++A+TH S++ ++N +G +++ SV+ L + +
Sbjct: 9 QAHRAIQKRLGYEFRNMELLQQALTHRSYNAKHNERFEFVGDSILNYSVARMLFDAFPKL 68
Query: 100 SPKDLNRR----VSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAI 152
S +L+R V+E EI+ + DG++LG ++ P+++ A A+
Sbjct: 69 SEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAM 124
Query: 153 FGAIAVDT 160
F A++ D
Sbjct: 125 FAAVSFDA 132
>gi|241758554|ref|ZP_04756671.1| ribonuclease III [Neisseria flavescens SK114]
gi|241321297|gb|EER57457.1| ribonuclease III [Neisseria flavescens SK114]
Length = 239
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 69/128 (53%), Gaps = 11/128 (8%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
A +QK++GY F+++ LL++A+TH S++ ++N +G +++ SV+ L + +
Sbjct: 9 QAHRAIQKRLGYEFRNMELLQQALTHRSYNAKHNERFEFVGDSILNYSVARMLFDAFPKL 68
Query: 100 SPKDLNRR----VSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAI 152
S +L+R V+E EI+ + DG++LG ++ P+++ A A+
Sbjct: 69 SEGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAM 124
Query: 153 FGAIAVDT 160
F A++ D
Sbjct: 125 FAAVSFDA 132
>gi|206559398|ref|YP_002230159.1| ribonuclease III [Burkholderia cenocepacia J2315]
gi|206561200|ref|YP_002231965.1| ribonuclease III [Burkholderia cenocepacia J2315]
gi|198035436|emb|CAR51312.1| ribonuclease III 2 [Burkholderia cenocepacia J2315]
gi|198037242|emb|CAR53164.1| ribonuclease III 1 [Burkholderia cenocepacia J2315]
Length = 409
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|394988699|ref|ZP_10381534.1| hypothetical protein SCD_01104 [Sulfuricella denitrificans skB26]
gi|393792078|dbj|GAB71173.1| hypothetical protein SCD_01104 [Sulfuricella denitrificans skB26]
Length = 224
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
E L ++IGY FK LLRRA+TH S+ +N L LG V+ +++ L + +
Sbjct: 4 EALVRRIGYEFKDPALLRRALTHRSYGMPHNERLEFLGDSVLSCAIATHLYHLHTRVQEG 63
Query: 103 DLNR-RVSETSNVEISCAVDGMHLG-LQKVVRVSPKTNS-TVPAVVCGAFRAIFGAIAVD 159
DL+R R + +S ++LG K+ K+ P+++ AI GA+ +D
Sbjct: 64 DLSRMRAHLVKELTLSEIASSLNLGDCLKLGEGELKSGGFRRPSILADTLEAIIGAVYLD 123
Query: 160 TG 161
G
Sbjct: 124 GG 125
>gi|224372163|ref|YP_002606535.1| ribonuclease III [Nautilia profundicola AmH]
gi|223589278|gb|ACM93014.1| ribonuclease III [Nautilia profundicola AmH]
Length = 226
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
L+K +GY FK+ L+ A+TH S+ +E NN L LG V+D V L + + PK
Sbjct: 6 LEKSLGYQFKNKKLITEALTHRSYKKEVNNERLEFLGDAVMDLIVGEYLFH----LFPKA 61
Query: 104 LNRRVSETSNV---EISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
+S+ E S L L K + +SP + P+++ AF A+ GAI
Sbjct: 62 EEGILSKLRAALVNEDSFTRLAKRLNLGKYLYLSPAEENNNGREKPSILSSAFEAVIGAI 121
Query: 157 AVDTGKCDDAGDVFLRV 173
++ G + A DV LR+
Sbjct: 122 YLEAG-FEKAKDVALRL 137
>gi|40063418|gb|AAR38229.1| ribonuclease III [uncultured marine bacterium 580]
Length = 231
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ L+K I Y FK LL AMTH S S NN L LG +++ V+ L K D+
Sbjct: 6 LKILEKSIKYKFKDDKLLALAMTHRSHSGMNNERLEFLGDSILNFVVADLLFKKFNDLDE 65
Query: 102 KDLNRRVSETSNVEISCAV-------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R S+ E + D ++LG+ ++ + P+++ AF A+ G
Sbjct: 66 GDLSRLRSQLVKEEPLSKLGNELKIGDFLNLGVGEL----KSSGWRRPSILADAFEALIG 121
Query: 155 AIAVDTG 161
AI +D G
Sbjct: 122 AIFIDGG 128
>gi|445497932|ref|ZP_21464787.1| ribonuclease 3 [Janthinobacterium sp. HH01]
gi|444787927|gb|ELX09475.1| ribonuclease 3 [Janthinobacterium sp. HH01]
Length = 268
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ ++GYTF+ GLL++A+TH S S +N L LG +++ V+ L + + I
Sbjct: 3 LQLLQNRLGYTFQDAGLLQQALTHRSHSSLHNERLEFLGDSILNCVVASILYERFVAIDE 62
Query: 102 KDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
DL+R V + S EI+ L L + +R+ + P+++ A+
Sbjct: 63 GDLSRLRANLVKQQSLYEIA-----QKLELSQFLRLGEGELKSGGFRRPSILADTLEALL 117
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 118 GAIFLDGG 125
>gi|78065718|ref|YP_368487.1| ribonuclease III [Burkholderia sp. 383]
gi|77966463|gb|ABB07843.1| RNAse III [Burkholderia sp. 383]
Length = 408
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFSKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|322378529|ref|ZP_08052977.1| ribonuclease III [Helicobacter suis HS1]
gi|321149043|gb|EFX43495.1| ribonuclease III [Helicobacter suis HS1]
Length = 216
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 49 IGYTFKSIGLLRRAMTH-SSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRR 107
+GY FK LL++A+TH S+ + +NN L LG V+D V+ L + D+ DL++
Sbjct: 1 MGYVFKDPLLLQQALTHRSTKAHKNNERLEFLGDAVLDLVVAEILFTRFTDLQEGDLSKM 60
Query: 108 VSETSNVEISCAVDGMHLGLQKVVRVSP----KTNSTVPAVVCGAFRAIFGAIAVDTG 161
+ N E + + L LQ + +S T P+++ AF A+ GAI +++G
Sbjct: 61 RASLVN-EKAFFKLALSLNLQDHILISQAEANNNGHTKPSILSSAFEALMGAIYLESG 117
>gi|284799722|ref|ZP_05984688.2| ribonuclease III [Neisseria subflava NJ9703]
gi|284797336|gb|EFC52683.1| ribonuclease III [Neisseria subflava NJ9703]
Length = 296
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 69/127 (54%), Gaps = 11/127 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
A +QK++GY F+++ LL++A+TH S++ ++N +G +++ SV+ L + +S
Sbjct: 10 AHRAIQKRLGYEFRNMELLQQALTHRSYNAKHNERFEFVGDSILNYSVARMLFDAFPKLS 69
Query: 101 PKDLNRR----VSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+R V+E EI+ + DG++LG ++ P+++ A A+F
Sbjct: 70 EGELSRMRAALVNEGVLAEIALEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMF 125
Query: 154 GAIAVDT 160
A++ D
Sbjct: 126 AAVSFDA 132
>gi|223041196|ref|ZP_03611448.1| ribonuclease III [Campylobacter rectus RM3267]
gi|222877555|gb|EEF12684.1| ribonuclease III [Campylobacter rectus RM3267]
Length = 222
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+ L++++GY FK LL+ A+TH S NN L LG V+D + L +K +S
Sbjct: 1 MRNLEEKLGYKFKDEKLLKTALTHKSVKGGANNERLEFLGDAVMDLVIGDYLFHKFSRLS 60
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
DL++ + N E S A +L L +++ +SP +++ AF A+ GAI
Sbjct: 61 EGDLSKLRAALVN-EKSFAELAKYLNLGQLINISPAEEHNGGRLKASILSDAFEALMGAI 119
Query: 157 AVDTG 161
+++G
Sbjct: 120 YLESG 124
>gi|255321781|ref|ZP_05362936.1| ribonuclease III [Campylobacter showae RM3277]
gi|255301261|gb|EET80523.1| ribonuclease III [Campylobacter showae RM3277]
Length = 222
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+ L++++GY FK LL+ A+TH S NN L LG V+D + L +K +S
Sbjct: 1 MRNLEEKLGYKFKDEKLLKTALTHKSVKGGANNERLEFLGDAVMDLVIGDYLFHKFSRLS 60
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
DL++ + N E S A +L L +++ +SP +++ AF A+ GAI
Sbjct: 61 EGDLSKLRAALVN-EKSFAELAKYLNLGQLINISPAEEHNGGRAKASILSDAFEALMGAI 119
Query: 157 AVDTG 161
+++G
Sbjct: 120 YLESG 124
>gi|288575033|ref|ZP_06393390.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570774|gb|EFC92331.1| ribonuclease III [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 244
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTSVSLRL 92
+ L +Q ++GY+F I LLR A+THSS++ E+ N L LG V++ + S RL
Sbjct: 6 WENNLSLIQDRLGYSFTDIELLREALTHSSYAHESGLRSWNERLEFLGDAVLELATSTRL 65
Query: 93 LNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS-----PKTNSTVPAVVCG 147
D+ L R + E + LGL ++RV+ + ++
Sbjct: 66 FRAMKDMDEGGLTRLRARLVRKE-ALLTWAEALGLSGILRVNRGLRKKGEGCDLSSMHAD 124
Query: 148 AFRAIFGAIAVDTG 161
A AIFGA+ +D G
Sbjct: 125 AIEAIFGAVYMDGG 138
>gi|424782431|ref|ZP_18209278.1| Ribonuclease III [Campylobacter showae CSUNSWCD]
gi|421959751|gb|EKU11359.1| Ribonuclease III [Campylobacter showae CSUNSWCD]
Length = 222
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+ L++++GY FK LL+ A+TH S NN L LG V+D + L +K +S
Sbjct: 1 MRNLEEKLGYKFKDEKLLKTALTHKSVKGGANNERLEFLGDAVMDLVIGDYLFHKFSRLS 60
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
DL++ + N E S A +L L +++ +SP +++ AF A+ GAI
Sbjct: 61 EGDLSKLRAALVN-EKSFAELAKYLNLGQLINISPAEEHNGGRAKASILSDAFEALMGAI 119
Query: 157 AVDTG 161
+++G
Sbjct: 120 YLESG 124
>gi|254252845|ref|ZP_04946163.1| Ribonuclease III [Burkholderia dolosa AUO158]
gi|124895454|gb|EAY69334.1| Ribonuclease III [Burkholderia dolosa AUO158]
Length = 377
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNIADGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|293399592|ref|ZP_06643745.1| ribonuclease III [Neisseria gonorrhoeae F62]
gi|291610161|gb|EFF39283.1| ribonuclease III [Neisseria gonorrhoeae F62]
Length = 267
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ + LLRRA+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 41 AIQKKLGYAFRDMSLLRRALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 100
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ + P+++ A A+F A+
Sbjct: 101 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSSGFRRPSILADAMEAMFAAV 156
Query: 157 AVDT 160
+ D
Sbjct: 157 SFDA 160
>gi|254493164|ref|ZP_05106335.1| ribonuclease III [Neisseria gonorrhoeae 1291]
gi|268600776|ref|ZP_06134943.1| ribonuclease III [Neisseria gonorrhoeae PID18]
gi|226512204|gb|EEH61549.1| ribonuclease III [Neisseria gonorrhoeae 1291]
gi|268584907|gb|EEZ49583.1| ribonuclease III [Neisseria gonorrhoeae PID18]
Length = 267
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ + LLRRA+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 41 AIQKKLGYAFRDMSLLRRALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 100
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ + P+++ A A+F A+
Sbjct: 101 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSSGFRRPSILADAMEAMFAAV 156
Query: 157 AVDT 160
+ D
Sbjct: 157 SFDA 160
>gi|427401798|ref|ZP_18892870.1| ribonuclease 3 [Massilia timonae CCUG 45783]
gi|425719336|gb|EKU82270.1| ribonuclease 3 [Massilia timonae CCUG 45783]
Length = 266
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ ++ YTF+ IGLL++A+TH S S +N L LG V++ V+ L + +
Sbjct: 3 LQLLQTRLEYTFRDIGLLQQALTHRSHSSLHNERLEFLGDSVLNCVVASVLYERFGTLDE 62
Query: 102 KDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
DL+R V + + EI+ +D L + +R+ + P+++ A+
Sbjct: 63 GDLSRLRANLVKQQALFEIAQKLD-----LSQFLRLGEGELKSGGFRRPSILADTLEALL 117
Query: 154 GAIAVDTGKCDDAGDV 169
GAI +D+G D A DV
Sbjct: 118 GAIFLDSG-FDSARDV 132
>gi|406897689|gb|EKD41567.1| hypothetical protein ACD_73C00655G0003 [uncultured bacterium]
Length = 248
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 32 FKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALGILGGYVI 84
F +S +L +K++GY F I LL++A+TH S+ S ENN L LG V+
Sbjct: 12 FGSSHAEHPSLVLCEKKLGYVFSDISLLKKALTHKSYANENKLPSTENNERLEFLGDAVL 71
Query: 85 DTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----T 140
+ +VS L+ + + DL++ + N E S A + L + + + + T
Sbjct: 72 ELAVSHLLMQMFAESNEGDLSKLRAAVVN-ETSLAALAREINLGEFLFLGKGEDQCQGRT 130
Query: 141 VPAVVCGAFRAIFGAIAVDTG 161
+++ AF A+ GAI D+G
Sbjct: 131 KDSLLSDAFEAVLGAIYQDSG 151
>gi|313683639|ref|YP_004061377.1| RNAase III [Sulfuricurvum kujiense DSM 16994]
gi|313156499|gb|ADR35177.1| RNAse III [Sulfuricurvum kujiense DSM 16994]
Length = 226
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE-ENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
L+ LQ+++GYTF++ LL A+TH S+ + NN L LG V+D V L K
Sbjct: 4 LQALQERLGYTFQNKELLIEALTHKSYKQPYNNERLEFLGDAVLDLIVGEYLYKKFRGYD 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIA 157
L++ R S + + + ++LG + + + NS T +++ AF A+ GA+
Sbjct: 64 EGKLSKMRASLVNEGGFTSLANHLNLGEHIFLSNAEENNSGRTKSSLLSNAFEAVMGAMY 123
Query: 158 VDTG 161
++TG
Sbjct: 124 LETG 127
>gi|421562909|ref|ZP_16008731.1| ribonuclease III [Neisseria meningitidis NM2795]
gi|402341616|gb|EJU76789.1| ribonuclease III [Neisseria meningitidis NM2795]
Length = 239
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GYTF+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYTFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|59800710|ref|YP_207422.1| ribonuclease III [Neisseria gonorrhoeae FA 1090]
gi|75432565|sp|Q5F9X7.1|RNC_NEIG1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|59717605|gb|AAW89010.1| putative ribonuclease III [Neisseria gonorrhoeae FA 1090]
Length = 239
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ + LLRRA+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDMSLLRRALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ + P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSSGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|47168737|pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Ds-Rna At 2.15 Angstrom
Resolution
Length = 220
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 18/129 (13%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE L+K++GYTFK LL +A+TH S+S +E+ L LG D V+ +++ + S
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLG----DALVNFFIVDLLVQYS 59
Query: 101 PKDLNRRVSETSNVEISCAVD------GMHLGLQKVVRVSP-KTNSTVPAVVCGAFRAIF 153
P N+R S ++ + L L K +R+ K N T ++ F+A++
Sbjct: 60 P---NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINET---IIGDVFKALW 113
Query: 154 GAIAVDTGK 162
A+ +D+G+
Sbjct: 114 AAVYIDSGR 122
>gi|240016009|ref|ZP_04722549.1| ribonuclease III [Neisseria gonorrhoeae FA6140]
Length = 239
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ + LLRRA+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDMSLLRRALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ + P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSSGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|421906486|ref|ZP_16336380.1| ribonuclease III [Neisseria meningitidis alpha704]
gi|393292458|emb|CCI72316.1| ribonuclease III [Neisseria meningitidis alpha704]
Length = 267
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GYTF+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 41 AIQKKLGYTFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 100
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 101 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 156
Query: 157 AVDT 160
+ D
Sbjct: 157 SFDA 160
>gi|340788054|ref|YP_004753519.1| ribonuclease III [Collimonas fungivorans Ter331]
gi|340553321|gb|AEK62696.1| Ribonuclease III [Collimonas fungivorans Ter331]
Length = 333
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 14/136 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L LQ ++G+TFK LL++A+TH S S +N L LG +++ V+ L ++ I
Sbjct: 3 LMLLQNRLGHTFKDATLLQQALTHRSHSTLHNERLEFLGDSILNCVVASLLFDRYTKIDE 62
Query: 102 KDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
DL+R V + S EI+ L L + +R+ + P+++ A+F
Sbjct: 63 GDLSRVRANLVKQQSLYEIA-----QRLELSQFLRLGEGELKSGGFRRPSILADTLEALF 117
Query: 154 GAIAVDTGKCDDAGDV 169
GAI +D G D A DV
Sbjct: 118 GAIFLDAG-FDAARDV 132
>gi|83753758|pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
gi|83753759|pdb|1YYO|B Chain B, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
Length = 221
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 18/129 (13%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE L+K++GYTFK LL +A+TH S+S +E+ L LG D V+ +++ + S
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLG----DALVNFFIVDLLVQYS 59
Query: 101 PKDLNRRVSETSNVEISCAVD------GMHLGLQKVVRVSP-KTNSTVPAVVCGAFRAIF 153
P N+R S ++ + L L K +R+ K N T ++ F+A++
Sbjct: 60 P---NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINET---IIGDVFKALW 113
Query: 154 GAIAVDTGK 162
A+ +D+G+
Sbjct: 114 AAVYIDSGR 122
>gi|86152331|ref|ZP_01070542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
gi|315125039|ref|YP_004067043.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
gi|85840820|gb|EAQ58071.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
gi|315018761|gb|ADT66854.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
Length = 224
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLERSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + V+ K N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEKNNGGKEKPSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|52550203|gb|AAU84052.1| ribonuclease III [uncultured archaeon GZfos36D8]
Length = 262
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-----NNRALGILGGYVIDTSVSLRL--LN 94
L L+ IG+ FK+I LL A+T S+S E N + L LG V+ ++ L L+
Sbjct: 16 LMELEASIGHQFKNIALLEEAITTGSYSNEHPGSSNYQTLEFLGDRVLSLILAEELFKLS 75
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
K + + +E N + A G ++GL+ +R + K P V+ F AI G
Sbjct: 76 KSASLDEGKMTFLKAELEN-NLRLAEYGENIGLRNYIRANEKREDIRPKVIADVFEAICG 134
Query: 155 AIAVDT 160
AI +DT
Sbjct: 135 AIYLDT 140
>gi|168333987|ref|ZP_02692211.1| Ribonuclease III [Epulopiscium sp. 'N.t. morphotype B']
Length = 239
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 22/150 (14%)
Query: 27 ANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGIL 79
+ND+R LE+ +K+I YTFK I LL A+THSS++ E +N L L
Sbjct: 4 SNDRR--------VVLESFEKKIEYTFKRIELLDLALTHSSYANEHREQGVKDNERLEFL 55
Query: 80 GGYVIDTSVSLRLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN 138
G ++D VS L K + DL++ R S E S A G L L K + +
Sbjct: 56 GDAILDLIVSEYLFKKYPESQEGDLSKFRASIV--CEASLAKAGKRLELGKYILLGHGEE 113
Query: 139 ----STVPAVVCGAFRAIFGAIAVDTGKCD 164
+++ AF A+ GA+ +D+ D
Sbjct: 114 MGGGRDRESIIADAFEAVTGAMLIDSSYED 143
>gi|254468787|ref|ZP_05082193.1| ribonuclease III [beta proteobacterium KB13]
gi|207087597|gb|EDZ64880.1| ribonuclease III [beta proteobacterium KB13]
Length = 228
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
++ L+ + Y FK I LL++++TH SF ENN L LG +++ +++ L K +I
Sbjct: 6 VKQLEDLLQYKFKDINLLQKSLTHRSFDGENNERLEFLGDSILNFTIAEALFIKFPNIPE 65
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + EI+ + D + LG ++ + P+++ F AI G
Sbjct: 66 GDLSRLRASLVKSGTLAEIAVKIKLGDFIFLGEGELKSAGWRR----PSILADTFEAIIG 121
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 122 ALYLDGG 128
>gi|83652594|gb|ABC36657.1| ribonuclease III, putative [Burkholderia thailandensis E264]
Length = 487
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 21 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFSKLDE 80
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ P+++ AF AI G
Sbjct: 81 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIG 136
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 137 AVFLDGG 143
>gi|134295164|ref|YP_001118899.1| ribonuclease III [Burkholderia vietnamiensis G4]
gi|134138321|gb|ABO54064.1| RNAse III [Burkholderia vietnamiensis G4]
Length = 416
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|171463192|ref|YP_001797305.1| ribonuclease III [Polynucleobacter necessarius subsp. necessarius
STIR1]
gi|171192730|gb|ACB43691.1| Ribonuclease III [Polynucleobacter necessarius subsp. necessarius
STIR1]
Length = 263
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQ+++GYTFK LL +A+TH S S++NN L LG +++ V+ L + D+ DL
Sbjct: 12 LQERLGYTFKKPELLNQALTHRSHSKKNNERLEFLGDSILNCVVAEMLYERYSDLDEGDL 71
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + + EI+ + D + LG ++ + P+++ A+ GAI
Sbjct: 72 SRVRANLVKQQALYEIAQTLSLSDYLRLGEGELKSGGFRR----PSILADTLEAVTGAIF 127
Query: 158 VDTG 161
+D G
Sbjct: 128 LDGG 131
>gi|18158935|pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From
Aquifex Aeolicus At 2.15 Angstrom Resolution
gi|18158936|pdb|1I4S|B Chain B, Crystal Structure Of Rnase Iii Endonuclease Domain From
Aquifex Aeolicus At 2.15 Angstrom Resolution
Length = 147
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 12/126 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE L+K++GYTFK LL +A+TH S+S +E+ L LG D V+ +++ + S
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLG----DALVNFFIVDLLVQYS 59
Query: 101 PKDLNRRVSETSNVEISCAVDGM---HLGLQKVVRVSP-KTNSTVPAVVCGAFRAIFGAI 156
P +S IS + L L K +R+ K N T ++ F A++ A+
Sbjct: 60 PNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINET---IIGDVFEALWAAV 116
Query: 157 AVDTGK 162
+D+G+
Sbjct: 117 YIDSGR 122
>gi|18158946|pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
gi|18158947|pdb|1JFZ|B Chain B, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
gi|18158948|pdb|1JFZ|C Chain C, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
gi|18158949|pdb|1JFZ|D Chain D, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
gi|47168733|pdb|1RC5|A Chain A, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
gi|47168734|pdb|1RC5|B Chain B, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
gi|47168735|pdb|1RC5|C Chain C, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
gi|47168736|pdb|1RC5|D Chain D, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
Length = 154
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 12/126 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE L+K++GYTFK LL +A+TH S+S +E+ L LG D V+ +++ + S
Sbjct: 5 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLG----DALVNFFIVDLLVQYS 60
Query: 101 PKDLNRRVSETSNVEISCAVDGM---HLGLQKVVRVSP-KTNSTVPAVVCGAFRAIFGAI 156
P +S IS + L L K +R+ K N T ++ F A++ A+
Sbjct: 61 PNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINET---IIGDVFEALWAAV 117
Query: 157 AVDTGK 162
+D+G+
Sbjct: 118 YIDSGR 123
>gi|345886949|ref|ZP_08838163.1| ribonuclease III [Bilophila sp. 4_1_30]
gi|345037798|gb|EGW42307.1| ribonuclease III [Bilophila sp. 4_1_30]
Length = 233
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 12/144 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNK 95
L+ LQ +IGY FK LL A+THSS++ E +N L LG V++ +VS +L +
Sbjct: 3 LDVLQDRIGYRFKDESLLVLAVTHSSWANEHSAGNAHNERLEFLGDAVLEIAVSAQLFAR 62
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS----PKTNSTVPAVVCGAFRA 151
D +L R S N E + AV L L +R++ + +++ A A
Sbjct: 63 FPDAREGELTRLRSSLVN-EATLAVIARKLHLDDCLRLARGEENQGGRQRDSLLSDAMEA 121
Query: 152 IFGAIAVDTGKCDDAGDVFLRVHS 175
+FG + VD G + A +V R+++
Sbjct: 122 VFGGVFVDGG-IEKAREVVERLYT 144
>gi|160880576|ref|YP_001559544.1| ribonuclease III [Clostridium phytofermentans ISDg]
gi|160429242|gb|ABX42805.1| Ribonuclease III [Clostridium phytofermentans ISDg]
Length = 235
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
L +++I Y F GLLR+A+THSSF+ E NN L LG V++ + S L
Sbjct: 10 LAEFEQKIDYAFTEPGLLRQALTHSSFANEKRLSKLANNERLEFLGDAVLELTTSEWLFE 69
Query: 95 KDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAF 149
K + DL + R S ++ +HLG V + ++T +++ A
Sbjct: 70 KHPKMPEGDLTKLRASMVCEQTLALCARELHLG--NYVFLGKGEDTTGGRDRDSILSDAL 127
Query: 150 RAIFGAIAVDTG 161
+I GAI +D G
Sbjct: 128 ESIIGAIYLDGG 139
>gi|52549755|gb|AAU83604.1| similar to ribonuclease III [uncultured archaeon GZfos32E4]
Length = 264
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-----NNRALGILGGYVIDTSVSLRL--LN 94
L L+ IG+ FK+I LL A+T S+S E N + L LG V+ ++ L L+
Sbjct: 16 LMELEASIGHQFKNIALLEEAITTGSYSNEHPGSSNYQTLEFLGDRVLSLILAEELFKLS 75
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
K + + +E N + A G ++GL+ +R + K P V+ F AI G
Sbjct: 76 KSASLDEGKMTFLKAELEN-NLRLAEYGENIGLRNYIRANEKREDIRPKVIADVFEAICG 134
Query: 155 AIAVDT 160
AI +DT
Sbjct: 135 AIYLDT 140
>gi|254245911|ref|ZP_04939232.1| Ribonuclease III [Burkholderia cenocepacia PC184]
gi|124870687|gb|EAY62403.1| Ribonuclease III [Burkholderia cenocepacia PC184]
Length = 350
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 24 LESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDL 83
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ DG+ LG ++ P+++ AF AI GA+
Sbjct: 84 SRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIGAVF 139
Query: 158 VDTG 161
+D G
Sbjct: 140 LDGG 143
>gi|167563529|ref|ZP_02356445.1| ribonuclease III [Burkholderia oklahomensis EO147]
Length = 293
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
++ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDL 60
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ DG+ LG ++ + P+++ AF AI GA+
Sbjct: 61 SRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRR----PSILADAFEAIIGAVF 116
Query: 158 VDTG 161
+D G
Sbjct: 117 LDGG 120
>gi|161723174|ref|YP_442265.2| ribonuclease III [Burkholderia thailandensis E264]
Length = 469
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFSKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|269792704|ref|YP_003317608.1| ribonuclease III [Thermanaerovibrio acidaminovorans DSM 6589]
gi|269100339|gb|ACZ19326.1| ribonuclease III [Thermanaerovibrio acidaminovorans DSM 6589]
Length = 226
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTSVSLRL 92
F ALE LQ ++GY F LL A+THSSF+ + N L LG V+ V+ L
Sbjct: 7 FHRALEELQDRVGYRFADTQLLIEALTHSSFANQAQLGYCNERLEFLGDSVLGLCVAEEL 66
Query: 93 LNKDIDISPKDLNRRVSETSNVEISC---AVDGMHLGLQKVVRVSPK-TNSTVPAVVCGA 148
+ P + R+++ + +S A G LGL +V+RV +V A
Sbjct: 67 YRR----HPSEREGRLTKLKSTGVSSHNLARSGRVLGLDRVLRVGKAIKGGPSEGMVADA 122
Query: 149 FRAIFGAIAVDTG 161
A+ GA+ +D G
Sbjct: 123 MEALIGAVYLDGG 135
>gi|83753776|pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
gi|83753777|pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
Length = 221
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 18/129 (13%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE L+K++GYTFK LL +A+TH S+S +E+ L LG D V+ +++ + S
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLG----DALVNFFIVDLLVQYS 59
Query: 101 PKDLNRRVSETSNVEISCAVD------GMHLGLQKVVRVSP-KTNSTVPAVVCGAFRAIF 153
P N+R S ++ + L L K +R+ K N T ++ F+A++
Sbjct: 60 P---NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINET---IIGDVFQALW 113
Query: 154 GAIAVDTGK 162
A+ +D+G+
Sbjct: 114 AAVYIDSGR 122
>gi|170732444|ref|YP_001764391.1| ribonuclease III [Burkholderia cenocepacia MC0-3]
gi|169815686|gb|ACA90269.1| Ribonuclease III [Burkholderia cenocepacia MC0-3]
Length = 409
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 6 LESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDL 65
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ DG+ LG ++ P+++ AF AI GA+
Sbjct: 66 SRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIGAVF 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDGG 125
>gi|167586632|ref|ZP_02379020.1| ribonuclease III [Burkholderia ubonensis Bu]
Length = 278
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
++ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDL 60
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ DG+ LG ++ + P+++ AF AI GA+
Sbjct: 61 SRVRANLVKQQSLYEIAQALNISDGLRLGEGELRSGGFRR----PSILADAFEAIIGAVF 116
Query: 158 VDTG 161
+D G
Sbjct: 117 LDGG 120
>gi|256830196|ref|YP_003158924.1| ribonuclease III [Desulfomicrobium baculatum DSM 4028]
gi|256579372|gb|ACU90508.1| ribonuclease III [Desulfomicrobium baculatum DSM 4028]
Length = 242
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEE----NNRALGILGGYVIDTSVSLRLLNKD 96
AL+ LQ +I Y FK + LL +A+THSS + E +N L LG V++ +VS L K
Sbjct: 9 ALQALQNEIHYEFKQVKLLIQALTHSSHANEHGCPHNERLEFLGDAVLELAVSQELFRKF 68
Query: 97 IDISPKDLNR-RVSETSNVEISCAVDGMHLGL------QKVVRVSPKTNSTVPAVVCGAF 149
++ L + R + S ++ A +HLG + V+ + NS V+ A
Sbjct: 69 PEVQEGHLTKMRSALVSEGALAQAARRIHLGACLLLGRGEDVQGGREKNS----VLSDAL 124
Query: 150 RAIFGAIAVDTG 161
A+ GA+ +D G
Sbjct: 125 EAVLGAVYLDGG 136
>gi|107022210|ref|YP_620537.1| ribonuclease III [Burkholderia cenocepacia AU 1054]
gi|116689156|ref|YP_834779.1| ribonuclease III [Burkholderia cenocepacia HI2424]
gi|105892399|gb|ABF75564.1| RNAse III [Burkholderia cenocepacia AU 1054]
gi|116647245|gb|ABK07886.1| RNAse III [Burkholderia cenocepacia HI2424]
Length = 409
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 6 LESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDL 65
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ DG+ LG ++ P+++ AF AI GA+
Sbjct: 66 SRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIGAVF 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDGG 125
>gi|421470778|ref|ZP_15919133.1| ribonuclease III, partial [Burkholderia multivorans ATCC BAA-247]
gi|400226972|gb|EJO57000.1| ribonuclease III, partial [Burkholderia multivorans ATCC BAA-247]
Length = 339
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ +G+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|348617525|ref|ZP_08884073.1| Ribonuclease III (RNase III) [Candidatus Glomeribacter gigasporarum
BEG34]
gi|347817187|emb|CCD28668.1| Ribonuclease III (RNase III) [Candidatus Glomeribacter gigasporarum
BEG34]
Length = 224
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
T+ TLQ ++ Y F LLRRAMTH S S +N LG V++ +S + + +
Sbjct: 2 TSKNTLQSRLDYVFCRPVLLRRAMTHRSHSAPHNEKFEFLGDAVLNCVISALIFQRFPAL 61
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGA 155
DL+R + + C + L L K +R+ P+++ A A+FGA
Sbjct: 62 KEGDLSRIRAHLVKQQTLCQI-AQTLELAKDLRLGEGELRSGGRKRPSMLADALEALFGA 120
Query: 156 IAVDTG 161
I +D G
Sbjct: 121 IYLDGG 126
>gi|406876301|gb|EKD25900.1| hypothetical protein ACD_79C01447G0004 [uncultured bacterium]
Length = 252
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 27/160 (16%)
Query: 34 TSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDT 86
++ + L L+K++ YTFK LL ++M HSSF EN N L LG V++
Sbjct: 5 SNEELLSKLLPLEKKLQYTFKDKALLLKSMLHSSFVNENPLLQLKSNERLEFLGDTVLEL 64
Query: 87 SVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHL-GLQKVVRV----------SP 135
+S L++ +L + +++ S V G L L K +R+
Sbjct: 65 VISHHLVS--------NLKNKDEGVLSLKRSALVRGSSLTKLSKQLRLHNFLIVGKGEKK 116
Query: 136 KTNSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRVHS 175
+ S +V+C A A+FGAI +D G + A +V L++ S
Sbjct: 117 EDGSKRESVLCDALEAVFGAIYLDGG-LEAAREVILKIFS 155
>gi|374853052|dbj|BAL55970.1| ribonuclease III [uncultured planctomycete]
Length = 251
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 16/153 (10%)
Query: 35 SSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE---NNRALGILGGYVIDTSVSLR 91
SSP A L+ Q+ IGY F+++ LLR A+TH S + +N L LG V+ V R
Sbjct: 16 SSPDAW-LQECQEAIGYRFENLELLRAALTHVSMAASRLGSNERLEFLGDAVLGLIVCER 74
Query: 92 LLNKDIDISPKDLNRRVSETSNVEIS---CAVDGMHLGLQKVVRVSPKT--NSTVPAVVC 146
L K P+ L +++ + +S CA L L++ +RV + +VPA +
Sbjct: 75 LYEK----FPEYLEGELTKLKSFIVSRRVCAQVAQTLQLERFLRVGAGVGRSGSVPANLL 130
Query: 147 G-AFRAIFGAIAVDTGKCDDAGDVFLRVHSGEV 178
G F AI GAI +D G + A + LR H G +
Sbjct: 131 GDVFEAIIGAIYLDGG-LEAAKEWVLR-HMGPI 161
>gi|317484890|ref|ZP_07943780.1| ribonuclease III [Bilophila wadsworthia 3_1_6]
gi|316923872|gb|EFV45068.1| ribonuclease III [Bilophila wadsworthia 3_1_6]
Length = 233
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNK 95
L+ LQ +IGY FK LL A+THSS++ E +N L LG V++ +VS +L +
Sbjct: 3 LDVLQDRIGYRFKDESLLVLAVTHSSWANEHSAGNAHNERLEFLGDAVLEIAVSAQLFAR 62
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS----PKTNSTVPAVVCGAFRA 151
D +L R S N E + AV L L +R++ + +++ A A
Sbjct: 63 FPDAREGELTRLRSSLVN-EATLAVIARKLHLDDCLRLARGEENQGGRQRDSLLSDAMEA 121
Query: 152 IFGAIAVDTG 161
+FG + VD G
Sbjct: 122 VFGGVFVDGG 131
>gi|398806483|ref|ZP_10565390.1| ribonuclease III [Polaromonas sp. CF318]
gi|398088092|gb|EJL78663.1| ribonuclease III [Polaromonas sp. CF318]
Length = 233
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 34 TSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLL 93
TSSP L LQK++ + F + LL +A+TH SFS ++N + LG V++ +V+ L
Sbjct: 6 TSSP---GLPALQKRLEHEFSNPKLLLQALTHRSFSSDHNERIEFLGDSVLNLAVAGLLY 62
Query: 94 NKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRV----SPKTNSTVPAVVCGA 148
+ ++ DL+R R + + G LGL ++VR+ + P+++ A
Sbjct: 63 EQLSELPEGDLSRVRANLVKQDTLHKLAVG--LGLPEMVRLGEGEAKSGGHKRPSILADA 120
Query: 149 FRAIFGAIAVDTG 161
A+ GA+ +D G
Sbjct: 121 LEAVIGAVYLDAG 133
>gi|419683175|ref|ZP_14211884.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1213]
gi|380659791|gb|EIB75756.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1213]
Length = 224
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLEQSLTYEFKDKNLLMHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + V+ + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|126438815|ref|YP_001059800.1| ribonuclease III [Burkholderia pseudomallei 668]
gi|126218308|gb|ABN81814.1| ribonuclease III [Burkholderia pseudomallei 668]
Length = 467
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|307448396|pdb|3O2R|B Chain B, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
gi|307448398|pdb|3O2R|D Chain D, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
Length = 144
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE--NNRALGILGGYVIDTSVSLRLLNKDIDI 99
+E L++ + Y FK LL A+TH SF ++ NN L LG V+D V L +K
Sbjct: 2 IEKLEQSLTYEFKDKNLLIHALTHKSFXKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKD 61
Query: 100 SPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAI 156
+ DL++ R + + + + ++LG ++ V+ + N P+++ A AI GAI
Sbjct: 62 AEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAI 121
Query: 157 AVDTG 161
++ G
Sbjct: 122 HLEAG 126
>gi|167903627|ref|ZP_02490832.1| ribonuclease III [Burkholderia pseudomallei NCTC 13177]
Length = 467
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|53720035|ref|YP_109021.1| ribonuclease III [Burkholderia pseudomallei K96243]
gi|167816752|ref|ZP_02448432.1| ribonuclease III [Burkholderia pseudomallei 91]
gi|167895244|ref|ZP_02482646.1| ribonuclease III [Burkholderia pseudomallei 7894]
gi|167919873|ref|ZP_02506964.1| ribonuclease III [Burkholderia pseudomallei BCC215]
gi|52210449|emb|CAH36432.1| ribonuclease III [Burkholderia pseudomallei K96243]
Length = 467
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|217420723|ref|ZP_03452228.1| ribonuclease III [Burkholderia pseudomallei 576]
gi|237813195|ref|YP_002897646.1| ribonuclease III [Burkholderia pseudomallei MSHR346]
gi|217396135|gb|EEC36152.1| ribonuclease III [Burkholderia pseudomallei 576]
gi|237506043|gb|ACQ98361.1| ribonuclease III [Burkholderia pseudomallei MSHR346]
Length = 467
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|76811515|ref|YP_334276.1| ribonuclease III [Burkholderia pseudomallei 1710b]
gi|167739551|ref|ZP_02412325.1| ribonuclease III [Burkholderia pseudomallei 14]
gi|254258167|ref|ZP_04949221.1| ribonuclease III [Burkholderia pseudomallei 1710a]
gi|76580968|gb|ABA50443.1| ribonuclease III [Burkholderia pseudomallei 1710b]
gi|254216856|gb|EET06240.1| ribonuclease III [Burkholderia pseudomallei 1710a]
Length = 467
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|134277308|ref|ZP_01764023.1| ribonuclease III [Burkholderia pseudomallei 305]
gi|134250958|gb|EBA51037.1| ribonuclease III [Burkholderia pseudomallei 305]
Length = 467
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|126454458|ref|YP_001067087.1| ribonuclease III [Burkholderia pseudomallei 1106a]
gi|167825159|ref|ZP_02456630.1| ribonuclease III [Burkholderia pseudomallei 9]
gi|167846656|ref|ZP_02472164.1| ribonuclease III [Burkholderia pseudomallei B7210]
gi|167911876|ref|ZP_02498967.1| ribonuclease III [Burkholderia pseudomallei 112]
gi|242317956|ref|ZP_04816972.1| ribonuclease III [Burkholderia pseudomallei 1106b]
gi|254191245|ref|ZP_04897749.1| ribonuclease III [Burkholderia pseudomallei Pasteur 52237]
gi|254195715|ref|ZP_04902141.1| ribonuclease III [Burkholderia pseudomallei S13]
gi|254296871|ref|ZP_04964324.1| ribonuclease III [Burkholderia pseudomallei 406e]
gi|126228100|gb|ABN91640.1| ribonuclease III [Burkholderia pseudomallei 1106a]
gi|157808000|gb|EDO85170.1| ribonuclease III [Burkholderia pseudomallei 406e]
gi|157938917|gb|EDO94587.1| ribonuclease III [Burkholderia pseudomallei Pasteur 52237]
gi|169652460|gb|EDS85153.1| ribonuclease III [Burkholderia pseudomallei S13]
gi|242141195|gb|EES27597.1| ribonuclease III [Burkholderia pseudomallei 1106b]
Length = 467
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|53725351|ref|YP_102339.1| ribonuclease III [Burkholderia mallei ATCC 23344]
gi|121599423|ref|YP_993770.1| ribonuclease III [Burkholderia mallei SAVP1]
gi|124385463|ref|YP_001028764.1| ribonuclease III [Burkholderia mallei NCTC 10229]
gi|126450086|ref|YP_001081328.1| ribonuclease III [Burkholderia mallei NCTC 10247]
gi|167000779|ref|ZP_02266586.1| ribonuclease III [Burkholderia mallei PRL-20]
gi|238562760|ref|ZP_00439921.2| ribonuclease III [Burkholderia mallei GB8 horse 4]
gi|254178423|ref|ZP_04885078.1| ribonuclease III [Burkholderia mallei ATCC 10399]
gi|254199232|ref|ZP_04905598.1| ribonuclease III [Burkholderia mallei FMH]
gi|254205539|ref|ZP_04911891.1| ribonuclease III [Burkholderia mallei JHU]
gi|254357706|ref|ZP_04973979.1| ribonuclease III [Burkholderia mallei 2002721280]
gi|52428774|gb|AAU49367.1| ribonuclease III/hypothetical protein, fusion [Burkholderia mallei
ATCC 23344]
gi|121228233|gb|ABM50751.1| ribonuclease III [Burkholderia mallei SAVP1]
gi|124293483|gb|ABN02752.1| ribonuclease III/hypothetical protein [Burkholderia mallei NCTC
10229]
gi|126242956|gb|ABO06049.1| ribonuclease III [Burkholderia mallei NCTC 10247]
gi|147748828|gb|EDK55902.1| ribonuclease III [Burkholderia mallei FMH]
gi|147752982|gb|EDK60047.1| ribonuclease III [Burkholderia mallei JHU]
gi|148026833|gb|EDK84854.1| ribonuclease III [Burkholderia mallei 2002721280]
gi|160699462|gb|EDP89432.1| ribonuclease III [Burkholderia mallei ATCC 10399]
gi|238522001|gb|EEP85448.1| ribonuclease III [Burkholderia mallei GB8 horse 4]
gi|243063329|gb|EES45515.1| ribonuclease III [Burkholderia mallei PRL-20]
Length = 467
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|268598421|ref|ZP_06132588.1| ribonuclease III [Neisseria gonorrhoeae MS11]
gi|291044414|ref|ZP_06570123.1| ribonuclease III [Neisseria gonorrhoeae DGI2]
gi|268582552|gb|EEZ47228.1| ribonuclease III [Neisseria gonorrhoeae MS11]
gi|291011308|gb|EFE03304.1| ribonuclease III [Neisseria gonorrhoeae DGI2]
Length = 267
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ + LLRRA+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 41 AIQKKLGYAFRDMSLLRRALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 100
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 101 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 156
Query: 157 AVDT 160
+ D
Sbjct: 157 SFDA 160
>gi|268594306|ref|ZP_06128473.1| ribonuclease III [Neisseria gonorrhoeae 35/02]
gi|268596300|ref|ZP_06130467.1| ribonuclease III [Neisseria gonorrhoeae FA19]
gi|268603082|ref|ZP_06137249.1| ribonuclease III [Neisseria gonorrhoeae PID1]
gi|268681562|ref|ZP_06148424.1| ribonuclease III [Neisseria gonorrhoeae PID332]
gi|268683791|ref|ZP_06150653.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679]
gi|268686031|ref|ZP_06152893.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035]
gi|385335185|ref|YP_005889132.1| ribonuclease III [Neisseria gonorrhoeae TCDC-NG08107]
gi|268547695|gb|EEZ43113.1| ribonuclease III [Neisseria gonorrhoeae 35/02]
gi|268550088|gb|EEZ45107.1| ribonuclease III [Neisseria gonorrhoeae FA19]
gi|268587213|gb|EEZ51889.1| ribonuclease III [Neisseria gonorrhoeae PID1]
gi|268621846|gb|EEZ54246.1| ribonuclease III [Neisseria gonorrhoeae PID332]
gi|268624075|gb|EEZ56475.1| ribonuclease III [Neisseria gonorrhoeae SK-92-679]
gi|268626315|gb|EEZ58715.1| ribonuclease III [Neisseria gonorrhoeae SK-93-1035]
gi|317163728|gb|ADV07269.1| ribonuclease III [Neisseria gonorrhoeae TCDC-NG08107]
Length = 267
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ + LLRRA+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 41 AIQKKLGYAFRDMSLLRRALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 100
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 101 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 156
Query: 157 AVDT 160
+ D
Sbjct: 157 SFDA 160
>gi|15606266|ref|NP_213645.1| RNase III [Aquifex aeolicus VF5]
gi|7531189|sp|O67082.1|RNC_AQUAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|83753752|pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
gi|83753753|pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
gi|83753764|pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
gi|83753765|pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
gi|83753766|pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
gi|83753767|pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
gi|160877674|pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
gi|160877675|pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
gi|160877678|pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
gi|160877679|pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
gi|160877684|pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
gi|160877685|pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
gi|2983469|gb|AAC07049.1| RNase III [Aquifex aeolicus VF5]
Length = 221
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 18/129 (13%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE L+K++GYTFK LL +A+TH S+S +E+ L LG D V+ +++ + S
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLG----DALVNFFIVDLLVQYS 59
Query: 101 PKDLNRRVSETSNVEISCAVD------GMHLGLQKVVRVSP-KTNSTVPAVVCGAFRAIF 153
P N+R S ++ + L L K +R+ K N T ++ F A++
Sbjct: 60 P---NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINET---IIGDVFEALW 113
Query: 154 GAIAVDTGK 162
A+ +D+G+
Sbjct: 114 AAVYIDSGR 122
>gi|254184210|ref|ZP_04890800.1| ribonuclease III [Burkholderia pseudomallei 1655]
gi|184214741|gb|EDU11784.1| ribonuclease III [Burkholderia pseudomallei 1655]
Length = 467
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ DG+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|315924201|ref|ZP_07920427.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263]
gi|315622603|gb|EFV02558.1| ribonuclease III [Pseudoramibacter alactolyticus ATCC 23263]
Length = 229
Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSF--SEENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
LQ+ IGY FK+ L A+THSS SE+NN L LG V++ S+S L K D
Sbjct: 6 LQQSIGYIFKNQAYLHEALTHSSHGNSEKNNERLEYLGDAVLELSISDYLF-KHFDFDEG 64
Query: 103 DLNR-RVSETSNVEISCAVDGMHLG----LQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+ + R S + +S A +HLG L K +S + +++ AF A+ GAI
Sbjct: 65 KMTKLRASIVCSESLSQAARRLHLGNYLHLGKGEVISG--GRSRQSILENAFEAMLGAIF 122
Query: 158 VDT 160
+D+
Sbjct: 123 LDS 125
>gi|56478590|ref|YP_160179.1| ribonuclease III [Aromatoleum aromaticum EbN1]
gi|81598583|sp|Q5P086.1|RNC_AZOSE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56314633|emb|CAI09278.1| ribonuclease III [Aromatoleum aromaticum EbN1]
Length = 225
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
A L+ LQ+ +G+ F + LL +A+TH SF + NN L LG +++ V++ L +
Sbjct: 1 MAGKLDRLQRSLGHRFDNPALLEQALTHRSFGQPNNERLEFLGDSILNCVVAIALFERFA 60
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMH-----LGLQKVVRVSPKTNST----VPAVVCG 147
+ +++R R S + C DG+H L L + +R+ + P+++
Sbjct: 61 SLREGEMSRLRAS------LVCQ-DGLHRVALELDLGEYLRLGEGEMKSGGFRRPSILAD 113
Query: 148 AFRAIFGAIAVDTG 161
A A+F A +D G
Sbjct: 114 ALEAVFAATFLDQG 127
>gi|217970713|ref|YP_002355947.1| ribonuclease III [Thauera sp. MZ1T]
gi|217508040|gb|ACK55051.1| ribonuclease III [Thauera sp. MZ1T]
Length = 222
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
+ LQ ++G+ F + LL+ A+TH SF + NN LG V+D VS+ L + ++
Sbjct: 3 DRLQARLGHAFSDVRLLQEALTHRSFGQPNNERFEFLGDAVLDCVVSIALFGRFGELREG 62
Query: 103 DLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGAIAV 158
+L+ RV + + + + L L +R+ S P+++ A A+F A+ +
Sbjct: 63 ELS-RVRASLVRQDTLHRLALELELGDCLRLGEGELKSGGSRRPSILADALEALFAAVYL 121
Query: 159 DTG 161
D G
Sbjct: 122 DAG 124
>gi|240013570|ref|ZP_04720483.1| ribonuclease III [Neisseria gonorrhoeae DGI18]
gi|240120639|ref|ZP_04733601.1| ribonuclease III [Neisseria gonorrhoeae PID24-1]
Length = 239
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ + LLRRA+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDMSLLRRALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|194097974|ref|YP_002001022.1| ribonuclease III [Neisseria gonorrhoeae NCCP11945]
gi|238690180|sp|B4RJT7.1|RNC_NEIG2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|193933264|gb|ACF29088.1| ribonuclease III [Neisseria gonorrhoeae NCCP11945]
Length = 239
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ + LLRRA+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDMSLLRRALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|307448395|pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
gi|307448397|pdb|3O2R|C Chain C, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
Length = 170
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 28 IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 87
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG ++ V+ + N P+++ A AI GAI
Sbjct: 88 EGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIH 147
Query: 158 VDTG 161
++ G
Sbjct: 148 LEAG 151
>gi|86149260|ref|ZP_01067491.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
gi|88596211|ref|ZP_01099448.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
gi|218563224|ref|YP_002345004.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168 =
ATCC 700819]
gi|317511632|ref|ZP_07968930.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305]
gi|384448848|ref|YP_005656899.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902]
gi|403056346|ref|YP_006633751.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC
11168-BN148]
gi|407942970|ref|YP_006858617.1| ribonuclease III [Campylobacter jejuni subsp. jejuni PT14]
gi|415731373|ref|ZP_11473447.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099]
gi|419620986|ref|ZP_14154381.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51494]
gi|419623819|ref|ZP_14156940.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23218]
gi|419625061|ref|ZP_14158085.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23223]
gi|419628386|ref|ZP_14161245.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23263]
gi|419629909|ref|ZP_14162621.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 60004]
gi|419630965|ref|ZP_14163565.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23264]
gi|419633703|ref|ZP_14166131.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23269]
gi|419635954|ref|ZP_14168241.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 55037]
gi|419637815|ref|ZP_14169964.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9879]
gi|419639421|ref|ZP_14171450.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 86605]
gi|419645376|ref|ZP_14176925.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9081]
gi|419647079|ref|ZP_14178522.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 53161]
gi|419649109|ref|ZP_14180411.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9217]
gi|419650140|ref|ZP_14181366.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-1025]
gi|419651560|ref|ZP_14182656.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-894]
gi|419656399|ref|ZP_14187201.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-988]
gi|419658399|ref|ZP_14189029.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-1]
gi|419661780|ref|ZP_14192099.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-831]
gi|419663951|ref|ZP_14194134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-4]
gi|419671772|ref|ZP_14201414.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-14]
gi|419673128|ref|ZP_14202607.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51037]
gi|419675820|ref|ZP_14205079.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 110-21]
gi|419677786|ref|ZP_14206919.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87330]
gi|419679551|ref|ZP_14208544.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87459]
gi|419681434|ref|ZP_14210268.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 140-16]
gi|419684794|ref|ZP_14213374.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1577]
gi|419687924|ref|ZP_14216256.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1854]
gi|419690916|ref|ZP_14219105.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1893]
gi|419696155|ref|ZP_14224025.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23210]
gi|424849058|ref|ZP_18273527.1| ribonuclease III [Campylobacter jejuni subsp. jejuni D2600]
gi|22654076|sp|Q9PM40.1|RNC_CAMJE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|85840042|gb|EAQ57300.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
gi|88191052|gb|EAQ95024.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
gi|112360931|emb|CAL35732.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168 =
ATCC 700819]
gi|284926829|gb|ADC29181.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902]
gi|315927617|gb|EFV06948.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099]
gi|315928870|gb|EFV08132.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305]
gi|356487695|gb|EHI17637.1| ribonuclease III [Campylobacter jejuni subsp. jejuni D2600]
gi|380597882|gb|EIB18338.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51494]
gi|380599969|gb|EIB20317.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23218]
gi|380604482|gb|EIB24496.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23263]
gi|380605405|gb|EIB25378.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23223]
gi|380606913|gb|EIB26800.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 60004]
gi|380611214|gb|EIB30771.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 55037]
gi|380611347|gb|EIB30900.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23269]
gi|380611932|gb|EIB31472.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23264]
gi|380614766|gb|EIB34092.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9879]
gi|380616423|gb|EIB35627.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 86605]
gi|380620465|gb|EIB39355.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9081]
gi|380621996|gb|EIB40766.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 53161]
gi|380625526|gb|EIB44108.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9217]
gi|380628846|gb|EIB47133.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-1025]
gi|380631159|gb|EIB49369.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-894]
gi|380633483|gb|EIB51436.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-1]
gi|380635405|gb|EIB53222.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-988]
gi|380639431|gb|EIB56924.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-831]
gi|380641974|gb|EIB59278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-4]
gi|380648961|gb|EIB65749.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-14]
gi|380651181|gb|EIB67749.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 110-21]
gi|380653448|gb|EIB69868.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87330]
gi|380654393|gb|EIB70755.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51037]
gi|380657044|gb|EIB73153.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87459]
gi|380658109|gb|EIB74142.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 140-16]
gi|380666172|gb|EIB81720.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1577]
gi|380666470|gb|EIB82007.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1854]
gi|380668031|gb|EIB83415.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1893]
gi|380675351|gb|EIB90258.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23210]
gi|401781998|emb|CCK67709.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC
11168-BN148]
gi|407906808|gb|AFU43637.1| ribonuclease III [Campylobacter jejuni subsp. jejuni PT14]
Length = 224
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG ++ V+ + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|384085608|ref|ZP_09996783.1| ribonuclease 3 [Acidithiobacillus thiooxidans ATCC 19377]
Length = 226
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L+ LQK++GY F +GLL +A+TH S +N L LG ++ V+ RL + +S
Sbjct: 3 SLDILQKRLGYRFAEMGLLTQALTHRSAGSAHNERLEFLGDAALNFVVAARLFGRFPKVS 62
Query: 101 PKDLNRR----VSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
DL+R V E + EI+ + D + LG +V + +S + A A+
Sbjct: 63 EGDLSRMRARLVREETLAEIAGEIALADYLILGPGEVRSGGARRDS----IRADALEAVI 118
Query: 154 GAIAVDTG 161
GA +D G
Sbjct: 119 GAAFLDGG 126
>gi|300311260|ref|YP_003775352.1| dsRNA-specific ribonuclease [Herbaspirillum seropedicae SmR1]
gi|300074045|gb|ADJ63444.1| dsRNA-specific ribonuclease (RNAse III) protein [Herbaspirillum
seropedicae SmR1]
Length = 319
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
+ LQ+++G+TFK LL++A+TH S S +N L LG V++ V+ L + I
Sbjct: 4 QLLQQRLGHTFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKIDEG 63
Query: 103 DLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFG 154
DL+R V + S EI+ L L + +R+ + P+++ A+FG
Sbjct: 64 DLSRLRANLVKQQSLYEIA-----QRLELSQFLRLGEGELKSGGFRRPSILADTLEALFG 118
Query: 155 AIAVDTG 161
AI +D+G
Sbjct: 119 AIFLDSG 125
>gi|375107380|ref|ZP_09753641.1| ribonuclease III [Burkholderiales bacterium JOSHI_001]
gi|374668111|gb|EHR72896.1| ribonuclease III [Burkholderiales bacterium JOSHI_001]
Length = 234
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ+++G+ F LL+RA+TH S ++N L LG V++ +VS LL +
Sbjct: 5 LDALQQRLGHRFAQPRLLQRALTHRSHGADHNERLEFLGDAVLNLAVSGLLLERFAGSDE 64
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS---PKTNSTVPA-VVCGAFRAIFGAIA 157
DL RV E S + LGL +V+R+S K + A ++ A AI GA
Sbjct: 65 GDLT-RVRAHLVREDSLHRAALSLGLPEVMRLSDGEAKGGGALRASILADAMEAILGAAF 123
Query: 158 VDTG 161
+D G
Sbjct: 124 LDGG 127
>gi|148925776|ref|ZP_01809464.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
gi|145845786|gb|EDK22877.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
Length = 229
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 9 IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 68
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG ++ V+ + N P+++ A AI GAI
Sbjct: 69 EGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIH 128
Query: 158 VDTG 161
++ G
Sbjct: 129 LEAG 132
>gi|421478281|ref|ZP_15926046.1| ribonuclease III, partial [Burkholderia multivorans CF2]
gi|400224988|gb|EJO55178.1| ribonuclease III, partial [Burkholderia multivorans CF2]
Length = 368
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ +G+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|358051770|ref|ZP_09145878.1| ribonuclease III [Staphylococcus simiae CCM 7213]
gi|357258741|gb|EHJ08690.1| ribonuclease III [Staphylococcus simiae CCM 7213]
Length = 243
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F E K +G+++ +I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRLNFEAKMKALGFSYNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K D+ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPDLPEGNLT-KMRATIVCEPSLVIFANKIGLNEIILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>gi|221214088|ref|ZP_03587061.1| ribonuclease III [Burkholderia multivorans CGD1]
gi|221166265|gb|EED98738.1| ribonuclease III [Burkholderia multivorans CGD1]
Length = 402
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ +G+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|297343244|pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
gi|297343245|pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
Length = 248
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 28 IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 87
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG ++ V+ + N P+++ A AI GAI
Sbjct: 88 EGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIH 147
Query: 158 VDTG 161
++ G
Sbjct: 148 LEAG 151
>gi|221201351|ref|ZP_03574390.1| ribonuclease III [Burkholderia multivorans CGD2M]
gi|221208831|ref|ZP_03581829.1| ribonuclease III [Burkholderia multivorans CGD2]
gi|221171287|gb|EEE03736.1| ribonuclease III [Burkholderia multivorans CGD2]
gi|221178619|gb|EEE11027.1| ribonuclease III [Burkholderia multivorans CGD2M]
Length = 406
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ +G+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|238026617|ref|YP_002910848.1| ribonuclease III [Burkholderia glumae BGR1]
gi|237875811|gb|ACR28144.1| Ribonuclease III [Burkholderia glumae BGR1]
Length = 427
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 6 LESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDL 65
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ DG+ LG ++ P+++ AF AI GA+
Sbjct: 66 SRVRANLVKQQSLYEIAQALNIADGLRLGEGELR----SGGFRRPSILADAFEAIIGAVF 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDGG 125
>gi|319763845|ref|YP_004127782.1| ribonuclease iii [Alicycliphilus denitrificans BC]
gi|330823891|ref|YP_004387194.1| ribonuclease 3 [Alicycliphilus denitrificans K601]
gi|317118406|gb|ADV00895.1| ribonuclease III [Alicycliphilus denitrificans BC]
gi|329309263|gb|AEB83678.1| Ribonuclease 3 [Alicycliphilus denitrificans K601]
Length = 228
Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L LQ+++ + F LL+RA+TH SFS ++N L LG V++ +VS LL K +
Sbjct: 5 SLPALQQRLQHMFSDPSLLQRAVTHRSFSADHNERLEFLGDSVLNLAVS-SLLFKRMQGL 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRV----SPKTNSTVPAVVCGAFRAIFGAI 156
P+ RV + S + L L +V+R+ S P+++ A A+ GA+
Sbjct: 64 PEGELSRVRALLVRQESLHGIAVRLQLPQVLRLGEGESRSGGKMRPSILADALEAVIGAV 123
Query: 157 AVDTG 161
+D G
Sbjct: 124 YLDAG 128
>gi|221068688|ref|ZP_03544793.1| Ribonuclease III [Comamonas testosteroni KF-1]
gi|264677118|ref|YP_003277024.1| ribonuclease III [Comamonas testosteroni CNB-2]
gi|299530659|ref|ZP_07044074.1| ribonuclease III [Comamonas testosteroni S44]
gi|418530634|ref|ZP_13096557.1| ribonuclease III [Comamonas testosteroni ATCC 11996]
gi|220713711|gb|EED69079.1| Ribonuclease III [Comamonas testosteroni KF-1]
gi|262207630|gb|ACY31728.1| ribonuclease III [Comamonas testosteroni CNB-2]
gi|298721175|gb|EFI62117.1| ribonuclease III [Comamonas testosteroni S44]
gi|371452353|gb|EHN65382.1| ribonuclease III [Comamonas testosteroni ATCC 11996]
Length = 227
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
AL LQ+++ + F + LL+RA+TH SFS +NN L LG V+ ++S L K +
Sbjct: 4 ALVALQQRLQHQFANPALLQRAITHRSFSADNNERLEFLGDSVLSLAISSLLYAKLASMP 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRV----SPKTNSTVPAVVCGAFRAIFGAI 156
DL+ RV E + + L L ++R+ + P+++ A A+ GA+
Sbjct: 64 EGDLS-RVRANLVKEGTLHKIALKLQLPDLLRLGEGEAKSGGKQRPSILADAVEALIGAV 122
Query: 157 AVDTG 161
+D G
Sbjct: 123 YLDAG 127
>gi|149926460|ref|ZP_01914721.1| ribonuclease III [Limnobacter sp. MED105]
gi|149824823|gb|EDM84037.1| ribonuclease III [Limnobacter sp. MED105]
Length = 226
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 49 IGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRV 108
+ Y+FK LLR A+TH S+S +N L LG V++ + S+ L D+ ++R
Sbjct: 1 MAYSFKDQALLRLALTHRSYSSHHNERLEFLGDSVLNCAASILLFETHPDMDEGKMSRVR 60
Query: 109 SETSNVEISC-AVDGMHLGLQKVVRVSP---KTNSTVP-AVVCGAFRAIFGAIAVDTG 161
S V+ C A+ G +L L + + + ++ T+ ++V A A+FGAI +D+G
Sbjct: 61 SHL--VKQDCLAMVGRNLLLDQYLFLGAGELRSAKTIKDSIVADALEALFGAILLDSG 116
>gi|161525340|ref|YP_001580352.1| ribonuclease III [Burkholderia multivorans ATCC 17616]
gi|189349923|ref|YP_001945551.1| ribonuclease III [Burkholderia multivorans ATCC 17616]
gi|160342769|gb|ABX15855.1| Ribonuclease III [Burkholderia multivorans ATCC 17616]
gi|189333945|dbj|BAG43015.1| ribonuclease III [Burkholderia multivorans ATCC 17616]
Length = 406
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ +G+ LG ++ P+++ AF AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELR----SGGFRRPSILADAFEAIIG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|167837348|ref|ZP_02464231.1| ribonuclease III [Burkholderia thailandensis MSMB43]
Length = 452
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
++ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDL 60
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ DG+ LG ++ P+++ AF AI GA+
Sbjct: 61 SRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIGAVF 116
Query: 158 VDTG 161
VD G
Sbjct: 117 VDGG 120
>gi|121613213|ref|YP_001001278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
gi|121504230|gb|EAQ72743.2| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
Length = 225
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 5 IEKLERSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 64
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + V+ + N P+++ A AI GAI
Sbjct: 65 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIH 124
Query: 158 VDTG 161
++ G
Sbjct: 125 LEAG 128
>gi|153951733|ref|YP_001398912.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
gi|189043301|sp|A7H5Y2.1|RNC_CAMJD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|152939179|gb|ABS43920.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
Length = 225
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFTKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + V+ + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|86152963|ref|ZP_01071168.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
gi|167006173|ref|ZP_02271931.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
gi|419617831|ref|ZP_14151397.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 129-258]
gi|419654145|ref|ZP_14185094.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-872]
gi|419665962|ref|ZP_14196014.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-7]
gi|419668873|ref|ZP_14198676.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-11]
gi|419687215|ref|ZP_14215623.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1798]
gi|419691430|ref|ZP_14219550.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1928]
gi|85843848|gb|EAQ61058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
gi|380596428|gb|EIB17120.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 129-258]
gi|380631711|gb|EIB49874.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-872]
gi|380642199|gb|EIB59482.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-7]
gi|380648273|gb|EIB65135.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-11]
gi|380662839|gb|EIB78523.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1798]
gi|380672387|gb|EIB87559.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1928]
Length = 224
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLERSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + V+ + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|154500966|ref|ZP_02039004.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC
29799]
gi|150269990|gb|EDM97509.1| ribonuclease III [Pseudoflavonifractor capillosus ATCC 29799]
Length = 223
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
+E L++++GYTF++ LL A+THSS++ EN N L LG V+ + L
Sbjct: 1 MEKLEEKLGYTFQNRALLENALTHSSYANENKHTGAQSNERLEFLGDSVLGMVTADYLYR 60
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
D+ DL R V E S VE++ ++ G +L L K P++V A
Sbjct: 61 VHPDLPEGDLTRTRAALVCEGSLVEVAQQLELGTYLKLGKGEDAGGGRER--PSIVADAV 118
Query: 150 RAIFGAIAVDTG 161
A+ A+ +D G
Sbjct: 119 EAVLAAVYLDGG 130
>gi|121605952|ref|YP_983281.1| ribonuclease III [Polaromonas naphthalenivorans CJ2]
gi|120594921|gb|ABM38360.1| RNAse III [Polaromonas naphthalenivorans CJ2]
Length = 233
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 20/148 (13%)
Query: 34 TSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLL 93
+SSP AL+ LQK++ + F LL +A+TH SFS ++N + LG V++ +V+ L
Sbjct: 6 SSSP---ALQALQKRLQHEFAKPKLLVQALTHRSFSSDHNERIEFLGDSVLNLAVAGLLY 62
Query: 94 NKDIDISPKDLNRRVSETSNVEISCAVDGMH-----LGLQKVVRVSPKT----NSTVPAV 144
+ ++ DL+R +N+ D +H LGL ++R+ P++
Sbjct: 63 EQLSELPEGDLSR---VRANL---VKQDTLHQLAVVLGLPDLLRLGEGEARSGGKNRPSM 116
Query: 145 VCGAFRAIFGAIAVDTGKCDDAGDVFLR 172
+ A A+ GA+ +D G D D +R
Sbjct: 117 LADALEAVIGAVYLDAGY--DQADQLVR 142
>gi|225024664|ref|ZP_03713856.1| hypothetical protein EIKCOROL_01546 [Eikenella corrodens ATCC
23834]
gi|224942553|gb|EEG23762.1| hypothetical protein EIKCOROL_01546 [Eikenella corrodens ATCC
23834]
Length = 257
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 11/129 (8%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
A A E LQ+ +G++F++ L +A+TH S+S +NN +G ++D SV+ L +
Sbjct: 19 ARAGEELQRHLGHSFQNPRLFEQALTHRSYSAQNNERFEFVGDAILDYSVAKMLFDAFPG 78
Query: 99 ISPKDLNRRVSETSNVEISCAV-------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRA 151
S +L+R + N ++ + D ++LG+ ++ P+++ A A
Sbjct: 79 YSEGELSRLRANLVNQDVLAEIARSMGVGDALYLGVGELK----SGGFDRPSILADAVEA 134
Query: 152 IFGAIAVDT 160
+ AI+ D
Sbjct: 135 LLAAISFDA 143
>gi|365174613|ref|ZP_09362054.1| ribonuclease III [Synergistes sp. 3_1_syn1]
gi|363614536|gb|EHL66027.1| ribonuclease III [Synergistes sp. 3_1_syn1]
Length = 230
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Query: 33 KTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN----NRALGILGGYVIDTSV 88
KT L QK++ Y F LL+ A+THSS++ EN N L LG V++
Sbjct: 2 KTDKGREELLRAFQKKLRYQFNDTELLQEALTHSSYANENGVKFNERLEFLGDAVLELVT 61
Query: 89 SLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVP--AVVC 146
S +L + D L R + + S ++ +GL+ ++R+ + P +V
Sbjct: 62 SDKLFSSYPDYDEGQLTRLRARIV-CKNSLSLWASEMGLKNLIRIGKSLVKSGPTDSVAA 120
Query: 147 GAFRAIFGAIAVDTG 161
A+FGAI +D G
Sbjct: 121 DCVEALFGAIFLDGG 135
>gi|291539668|emb|CBL12779.1| RNAse III [Roseburia intestinalis XB6B4]
Length = 228
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRL 92
+ L+ LQ +IGYTF+ GLLR+A+THSS++ E +N L LG V++ S L
Sbjct: 2 SKLQELQNRIGYTFEKEGLLRQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSDFL 61
Query: 93 LNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCG 147
D+ DL + R S ++ M LG + + N T +++
Sbjct: 62 YRNYPDLPEGDLTKLRASIVCEPTLALCTREMDLG--DYLLLGKGENQTGGRKRKSILSD 119
Query: 148 AFRAIFGAIAVDTG 161
A ++ GAI +D G
Sbjct: 120 ALESVIGAIYLDGG 133
>gi|15676584|ref|NP_273728.1| ribonuclease III [Neisseria meningitidis MC58]
gi|385324554|ref|YP_005878993.1| ribonuclease III (RNase III) [Neisseria meningitidis 8013]
gi|385853624|ref|YP_005900138.1| ribonuclease III [Neisseria meningitidis H44/76]
gi|416197721|ref|ZP_11618697.1| ribonuclease III [Neisseria meningitidis CU385]
gi|421558588|ref|ZP_16004466.1| ribonuclease III [Neisseria meningitidis 92045]
gi|427828389|ref|ZP_18995405.1| ribonuclease III [Neisseria meningitidis H44/76]
gi|433464665|ref|ZP_20422151.1| ribonuclease III [Neisseria meningitidis NM422]
gi|433487864|ref|ZP_20445033.1| ribonuclease III [Neisseria meningitidis M13255]
gi|433490032|ref|ZP_20447164.1| ribonuclease III [Neisseria meningitidis NM418]
gi|433504837|ref|ZP_20461777.1| ribonuclease III [Neisseria meningitidis 9506]
gi|433506483|ref|ZP_20463400.1| ribonuclease III [Neisseria meningitidis 9757]
gi|433508987|ref|ZP_20465860.1| ribonuclease III [Neisseria meningitidis 12888]
gi|433510948|ref|ZP_20467782.1| ribonuclease III [Neisseria meningitidis 4119]
gi|22654075|sp|Q9K0C8.1|RNC_NEIMB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|7225914|gb|AAF41104.1| ribonuclease III [Neisseria meningitidis MC58]
gi|261392941|emb|CAX50526.1| ribonuclease III (RNase III) [Neisseria meningitidis 8013]
gi|316983658|gb|EFV62639.1| ribonuclease III [Neisseria meningitidis H44/76]
gi|325139865|gb|EGC62396.1| ribonuclease III [Neisseria meningitidis CU385]
gi|325200628|gb|ADY96083.1| ribonuclease III [Neisseria meningitidis H44/76]
gi|402337331|gb|EJU72579.1| ribonuclease III [Neisseria meningitidis 92045]
gi|432204536|gb|ELK60577.1| ribonuclease III [Neisseria meningitidis NM422]
gi|432224895|gb|ELK80657.1| ribonuclease III [Neisseria meningitidis M13255]
gi|432228874|gb|ELK84569.1| ribonuclease III [Neisseria meningitidis NM418]
gi|432242352|gb|ELK97876.1| ribonuclease III [Neisseria meningitidis 9506]
gi|432243807|gb|ELK99312.1| ribonuclease III [Neisseria meningitidis 9757]
gi|432247801|gb|ELL03236.1| ribonuclease III [Neisseria meningitidis 12888]
gi|432249140|gb|ELL04559.1| ribonuclease III [Neisseria meningitidis 4119]
Length = 239
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|421564956|ref|ZP_16010743.1| ribonuclease III [Neisseria meningitidis NM3081]
gi|402345561|gb|EJU80677.1| ribonuclease III [Neisseria meningitidis NM3081]
Length = 239
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|304388061|ref|ZP_07370190.1| ribonuclease III [Neisseria meningitidis ATCC 13091]
gi|304337918|gb|EFM04058.1| ribonuclease III [Neisseria meningitidis ATCC 13091]
Length = 267
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 41 AIQKKLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 100
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 101 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 156
Query: 157 AVDT 160
+ D
Sbjct: 157 SFDA 160
>gi|167570687|ref|ZP_02363561.1| ribonuclease III [Burkholderia oklahomensis C6786]
Length = 454
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
++ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDL 60
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ DG+ LG ++ P+++ AF AI GA+
Sbjct: 61 SRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIGAVF 116
Query: 158 VDTG 161
+D G
Sbjct: 117 LDGG 120
>gi|421554147|ref|ZP_16000095.1| ribonuclease III [Neisseria meningitidis 98008]
gi|402333417|gb|EJU68720.1| ribonuclease III [Neisseria meningitidis 98008]
Length = 239
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|418559245|ref|ZP_13123791.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21252]
gi|418993852|ref|ZP_13541488.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG290]
gi|371975536|gb|EHO92830.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21252]
gi|377745902|gb|EHT69877.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG290]
Length = 243
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P++V
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLVS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>gi|240146505|ref|ZP_04745106.1| ribonuclease III [Roseburia intestinalis L1-82]
gi|257201361|gb|EEU99645.1| ribonuclease III [Roseburia intestinalis L1-82]
gi|291535139|emb|CBL08251.1| RNAse III [Roseburia intestinalis M50/1]
Length = 228
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRL 92
+ L+ LQ +IGYTF+ GLLR+A+THSS++ E +N L LG V++ S L
Sbjct: 2 SKLQELQNRIGYTFEKEGLLRQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSDFL 61
Query: 93 LNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCG 147
D+ DL + R S ++ M LG + + N T +++
Sbjct: 62 YRNYPDLPEGDLTKLRASIVCEPTLALCTREMDLG--DYLLLGKGENQTGGRKRKSILSD 119
Query: 148 AFRAIFGAIAVDTG 161
A ++ GAI +D G
Sbjct: 120 ALESVIGAIYLDGG 133
>gi|416903938|ref|ZP_11930634.1| ribonuclease III, partial [Burkholderia sp. TJI49]
gi|325529480|gb|EGD06389.1| ribonuclease III [Burkholderia sp. TJI49]
Length = 279
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
++ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDL 60
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ +G+ LG ++ + P+++ AF AI GA+
Sbjct: 61 SRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRR----PSILADAFEAIIGAVF 116
Query: 158 VDTG 161
+D G
Sbjct: 117 LDGG 120
>gi|416120344|ref|ZP_11594983.1| Ribonuclease III [Campylobacter concisus UNSWCD]
gi|384576845|gb|EIF06166.1| Ribonuclease III [Campylobacter concisus UNSWCD]
Length = 223
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE ++ +GY FK LL A+TH S + NN L LG V+D V+ L K I+
Sbjct: 4 LEEFERNLGYKFKKSELLEEALTHKSTKQALNNERLEFLGDAVMDLLVAEYLFKKFSKIA 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
D+++ + N E S A L + + +R+S + +++ AF A+ GAI
Sbjct: 64 EGDMSKLRAALVN-EKSFANMSRRLNMGEFLRLSQAEENNGGREKDSILSDAFEAVMGAI 122
Query: 157 AVDTG 161
++ G
Sbjct: 123 YLEAG 127
>gi|419622547|ref|ZP_14155777.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23216]
gi|380599261|gb|EIB19635.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23216]
Length = 224
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + V+ + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|416178807|ref|ZP_11610764.1| ribonuclease III [Neisseria meningitidis M6190]
gi|416192743|ref|ZP_11616849.1| ribonuclease III [Neisseria meningitidis ES14902]
gi|421560860|ref|ZP_16006713.1| ribonuclease III [Neisseria meningitidis NM2657]
gi|433492187|ref|ZP_20449281.1| ribonuclease III [Neisseria meningitidis NM586]
gi|433494264|ref|ZP_20451334.1| ribonuclease III [Neisseria meningitidis NM762]
gi|433496446|ref|ZP_20453488.1| ribonuclease III [Neisseria meningitidis M7089]
gi|433498508|ref|ZP_20455517.1| ribonuclease III [Neisseria meningitidis M7124]
gi|433500476|ref|ZP_20457462.1| ribonuclease III [Neisseria meningitidis NM174]
gi|433502653|ref|ZP_20459619.1| ribonuclease III [Neisseria meningitidis NM126]
gi|325131860|gb|EGC54560.1| ribonuclease III [Neisseria meningitidis M6190]
gi|325137910|gb|EGC60485.1| ribonuclease III [Neisseria meningitidis ES14902]
gi|402339340|gb|EJU74556.1| ribonuclease III [Neisseria meningitidis NM2657]
gi|432228976|gb|ELK84669.1| ribonuclease III [Neisseria meningitidis NM586]
gi|432230938|gb|ELK86608.1| ribonuclease III [Neisseria meningitidis NM762]
gi|432234342|gb|ELK89962.1| ribonuclease III [Neisseria meningitidis M7124]
gi|432235530|gb|ELK91143.1| ribonuclease III [Neisseria meningitidis M7089]
gi|432235767|gb|ELK91376.1| ribonuclease III [Neisseria meningitidis NM174]
gi|432241876|gb|ELK97404.1| ribonuclease III [Neisseria meningitidis NM126]
Length = 239
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|451823164|ref|YP_007459438.1| ribonuclease III [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
gi|451775964|gb|AGF47005.1| ribonuclease III [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
Length = 230
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L+ + Y+F +I LL A+TH S+S +N L LG ++++S+++ L + I L
Sbjct: 6 LENSLKYSFNNISLLELALTHRSYSANHNERLEFLGDSILNSSITIILFERFSHIDEGGL 65
Query: 105 NR----RVSETSNVEISCAVDGMHLGLQKVVRVS----PKTNSTVPAVVCGAFRAIFGAI 156
+R V + S +I+ +D + + +R+ S P+++ AIFGAI
Sbjct: 66 SRLRASLVQQNSLAKIAIKLD-----ISRYLRLGDGEIKSGGSNRPSILADCIEAIFGAI 120
Query: 157 AVDTG 161
D+G
Sbjct: 121 FQDSG 125
>gi|57238646|ref|YP_179777.1| ribonuclease III [Campylobacter jejuni RM1221]
gi|384443998|ref|YP_005660250.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3]
gi|81353160|sp|Q5HSF8.1|RNC_CAMJR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|57167450|gb|AAW36229.1| ribonuclease III [Campylobacter jejuni RM1221]
gi|315059085|gb|ADT73414.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3]
Length = 224
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLERSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + V+ + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGREKPSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|421542090|ref|ZP_15988200.1| ribonuclease III [Neisseria meningitidis NM255]
gi|433468842|ref|ZP_20426271.1| ribonuclease III [Neisseria meningitidis 98080]
gi|402318026|gb|EJU53551.1| ribonuclease III [Neisseria meningitidis NM255]
gi|432205235|gb|ELK61265.1| ribonuclease III [Neisseria meningitidis 98080]
Length = 239
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|121634484|ref|YP_974729.1| ribonuclease III [Neisseria meningitidis FAM18]
gi|120866190|emb|CAM09930.1| putative ribonuclease III [Neisseria meningitidis FAM18]
Length = 267
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
A +QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++
Sbjct: 38 AHAAIQKKLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLT 97
Query: 101 PKDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+R V+E E++ + DG++LG ++ P+++ A A+F
Sbjct: 98 EGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMF 153
Query: 154 GAIAVDT 160
A++ D
Sbjct: 154 AAVSFDA 160
>gi|419694651|ref|ZP_14222609.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9872]
gi|380670012|gb|EIB85278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9872]
Length = 224
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + V+ + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGNFIFMSVAEENNGGKEKPSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|218767809|ref|YP_002342321.1| ribonuclease III [Neisseria meningitidis Z2491]
gi|421550236|ref|ZP_15996241.1| ribonuclease III [Neisseria meningitidis 69166]
gi|433471136|ref|ZP_20428527.1| ribonuclease III [Neisseria meningitidis 68094]
gi|433475293|ref|ZP_20432634.1| ribonuclease III [Neisseria meningitidis 88050]
gi|433477171|ref|ZP_20434494.1| ribonuclease III [Neisseria meningitidis 70012]
gi|433479269|ref|ZP_20436564.1| ribonuclease III [Neisseria meningitidis 63041]
gi|433513042|ref|ZP_20469836.1| ribonuclease III [Neisseria meningitidis 63049]
gi|433515228|ref|ZP_20472000.1| ribonuclease III [Neisseria meningitidis 2004090]
gi|433517189|ref|ZP_20473938.1| ribonuclease III [Neisseria meningitidis 96023]
gi|433519410|ref|ZP_20476131.1| ribonuclease III [Neisseria meningitidis 65014]
gi|433521510|ref|ZP_20478205.1| ribonuclease III [Neisseria meningitidis 61103]
gi|433523725|ref|ZP_20480390.1| ribonuclease III [Neisseria meningitidis 97020]
gi|433525925|ref|ZP_20482559.1| ribonuclease III [Neisseria meningitidis 69096]
gi|433527798|ref|ZP_20484409.1| ribonuclease III [Neisseria meningitidis NM3652]
gi|433529972|ref|ZP_20486565.1| ribonuclease III [Neisseria meningitidis NM3642]
gi|433532230|ref|ZP_20488796.1| ribonuclease III [Neisseria meningitidis 2007056]
gi|433534221|ref|ZP_20490766.1| ribonuclease III [Neisseria meningitidis 2001212]
gi|433538563|ref|ZP_20495043.1| ribonuclease III [Neisseria meningitidis 70030]
gi|433540542|ref|ZP_20496997.1| ribonuclease III [Neisseria meningitidis 63006]
gi|22654074|sp|Q9JVD3.1|RNC_NEIMA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|121051817|emb|CAM08123.1| putative ribonuclease III [Neisseria meningitidis Z2491]
gi|402330451|gb|EJU65798.1| ribonuclease III [Neisseria meningitidis 69166]
gi|432209625|gb|ELK65592.1| ribonuclease III [Neisseria meningitidis 68094]
gi|432211111|gb|ELK67066.1| ribonuclease III [Neisseria meningitidis 88050]
gi|432216393|gb|ELK72274.1| ribonuclease III [Neisseria meningitidis 70012]
gi|432217669|gb|ELK73536.1| ribonuclease III [Neisseria meningitidis 63041]
gi|432248719|gb|ELL04143.1| ribonuclease III [Neisseria meningitidis 63049]
gi|432253816|gb|ELL09152.1| ribonuclease III [Neisseria meningitidis 2004090]
gi|432254198|gb|ELL09533.1| ribonuclease III [Neisseria meningitidis 96023]
gi|432255401|gb|ELL10730.1| ribonuclease III [Neisseria meningitidis 65014]
gi|432260283|gb|ELL15542.1| ribonuclease III [Neisseria meningitidis 61103]
gi|432260624|gb|ELL15882.1| ribonuclease III [Neisseria meningitidis 97020]
gi|432262116|gb|ELL17361.1| ribonuclease III [Neisseria meningitidis 69096]
gi|432266105|gb|ELL21293.1| ribonuclease III [Neisseria meningitidis NM3652]
gi|432267900|gb|ELL23072.1| ribonuclease III [Neisseria meningitidis NM3642]
gi|432268175|gb|ELL23346.1| ribonuclease III [Neisseria meningitidis 2007056]
gi|432272731|gb|ELL27838.1| ribonuclease III [Neisseria meningitidis 2001212]
gi|432274571|gb|ELL29658.1| ribonuclease III [Neisseria meningitidis 70030]
gi|432277557|gb|ELL32603.1| ribonuclease III [Neisseria meningitidis 63006]
Length = 239
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|157415855|ref|YP_001483111.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
gi|283957021|ref|ZP_06374493.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
gi|384442208|ref|YP_005658511.1| ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1]
gi|415746574|ref|ZP_11475582.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327]
gi|419641678|ref|ZP_14173557.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23357]
gi|419643328|ref|ZP_14175076.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ATCC 33560]
gi|419697815|ref|ZP_14225542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23211]
gi|189043300|sp|A8FNU7.1|RNC_CAMJ8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157386819|gb|ABV53134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
gi|283791522|gb|EFC30319.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
gi|307748491|gb|ADN91761.1| Ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1]
gi|315931680|gb|EFV10641.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327]
gi|380616054|gb|EIB35273.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23357]
gi|380622316|gb|EIB41076.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ATCC 33560]
gi|380676845|gb|EIB91721.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23211]
Length = 224
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + V+ + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|261377909|ref|ZP_05982482.1| ribonuclease III [Neisseria cinerea ATCC 14685]
gi|269145767|gb|EEZ72185.1| ribonuclease III [Neisseria cinerea ATCC 14685]
Length = 239
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYEFRDISLLRQALTHRSCHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAVD---GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E EI+ +D G++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEIAAEMDVGEGLYLGTGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|171057289|ref|YP_001789638.1| ribonuclease III [Leptothrix cholodnii SP-6]
gi|170774734|gb|ACB32873.1| Ribonuclease III [Leptothrix cholodnii SP-6]
Length = 228
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+TLQ ++G+ F+ LL RA++H S ++N L LG V++ +VS LL D SP
Sbjct: 6 LDTLQARLGHVFRDQSLLLRAVSHRSHGADHNERLEFLGDAVLNMTVS-DLLFDQFDDSP 64
Query: 102 K-DLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGAI 156
+ DL R + ++ + + L L V+R+S + P+++ A A+ GA+
Sbjct: 65 EGDLTRVRAHLVRQDMLHRL-ALSLQLPAVLRLSDGEARAGGAQRPSILADAMEAVIGAV 123
Query: 157 AVDTG 161
D G
Sbjct: 124 YRDAG 128
>gi|114331755|ref|YP_747977.1| ribonuclease III [Nitrosomonas eutropha C91]
gi|122313494|sp|Q0AF70.1|RNC_NITEC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|114308769|gb|ABI60012.1| RNAse III [Nitrosomonas eutropha C91]
Length = 245
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 15/124 (12%)
Query: 47 KQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNR 106
+++GYTFK LL+ A+TH S NN L LG V++ +VS L + + + DL R
Sbjct: 29 QKLGYTFKQPDLLQEALTHRSLGFPNNERLEFLGDSVLNCAVSTLLFKRFLLLPEGDLTR 88
Query: 107 RVSETSNVEISCAVDGMH-----LGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+ N D +H LG+ +++ + + P+++ A AI GAI
Sbjct: 89 LRANFVN------QDALHQLASALGIGELILLGDGERKSGGHQRPSILANAMEAIIGAIY 142
Query: 158 VDTG 161
+++G
Sbjct: 143 LESG 146
>gi|424846628|ref|ZP_18271222.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NW]
gi|356485926|gb|EHI15913.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NW]
Length = 224
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + V+ + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|189043297|sp|A8Z6F6.1|RNC_CAMC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|158604915|gb|ABW74738.1| ribonuclease III [Campylobacter concisus 13826]
Length = 223
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE ++ +GY FK LL A+TH S + NN L LG V+D V+ L K I+
Sbjct: 4 LEEFERNLGYKFKKSELLEEALTHKSTKQALNNERLEFLGDAVMDLLVAEYLFKKFSKIA 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
D+++ + N E S A L + + +R+S + +++ AF A+ GAI
Sbjct: 64 EGDMSKLRAALVN-EKSFANMARRLKMGEFLRLSQAEENNGGREKDSILSDAFEAVMGAI 122
Query: 157 AVDTG 161
++ G
Sbjct: 123 YLEAG 127
>gi|365154598|ref|ZP_09351029.1| ribonuclease 3 [Campylobacter sp. 10_1_50]
gi|363649573|gb|EHL88682.1| ribonuclease 3 [Campylobacter sp. 10_1_50]
Length = 223
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE ++ +GY FK LL A+TH S + NN L LG V+D V+ L K I+
Sbjct: 4 LEEFERNLGYKFKQSELLEEALTHKSTKQALNNERLEFLGDAVMDLLVAEYLFKKFSKIA 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
D+++ + N E S A L + + +R+S + +++ AF A+ GAI
Sbjct: 64 EGDMSKLRAALVN-EKSFANMSRRLKMGEFLRLSQAEENNGGREKDSILSDAFEAVMGAI 122
Query: 157 AVDTG 161
++ G
Sbjct: 123 YLEAG 127
>gi|421539859|ref|ZP_15986013.1| ribonuclease III [Neisseria meningitidis 93004]
gi|421544049|ref|ZP_15990128.1| ribonuclease III [Neisseria meningitidis NM140]
gi|421546167|ref|ZP_15992217.1| ribonuclease III [Neisseria meningitidis NM183]
gi|421548434|ref|ZP_15994459.1| ribonuclease III [Neisseria meningitidis NM2781]
gi|421552462|ref|ZP_15998436.1| ribonuclease III [Neisseria meningitidis NM576]
gi|402320461|gb|EJU55949.1| ribonuclease III [Neisseria meningitidis 93004]
gi|402324396|gb|EJU59831.1| ribonuclease III [Neisseria meningitidis NM183]
gi|402324444|gb|EJU59878.1| ribonuclease III [Neisseria meningitidis NM140]
gi|402326095|gb|EJU61500.1| ribonuclease III [Neisseria meningitidis NM2781]
gi|402331094|gb|EJU66435.1| ribonuclease III [Neisseria meningitidis NM576]
Length = 239
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKRLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|419550405|ref|ZP_14088911.1| ribonuclease III [Campylobacter coli 2688]
gi|419553745|ref|ZP_14091902.1| ribonuclease III [Campylobacter coli 2698]
gi|380530677|gb|EIA55739.1| ribonuclease III [Campylobacter coli 2688]
gi|380533733|gb|EIA58640.1| ribonuclease III [Campylobacter coli 2698]
Length = 224
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 10/127 (7%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++++ Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IELLEQKLAYKFKDKDLLIHALTHKSFKKPYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFG 154
DL++ V+E S +I+ +V+ LG + + + N P+++ A AI G
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSVN---LGDFIFMSAAEENNGGKEKPSILSDALEAIMG 120
Query: 155 AIAVDTG 161
AI ++ G
Sbjct: 121 AIHLEAG 127
>gi|379009813|ref|YP_005267626.1| RNase III [Wigglesworthia glossinidia endosymbiont of Glossina
morsitans morsitans (Yale colony)]
gi|375158337|gb|AFA41403.1| RNase III [Wigglesworthia glossinidia endosymbiont of Glossina
morsitans morsitans (Yale colony)]
Length = 226
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
TLQK+IGY FK LL++A+TH SFS ++N L LG +++ +S L ++I+ D
Sbjct: 8 TLQKKIGYIFKKNTLLQQALTHRSFSNKHNERLEFLGDSILNYIISDVLYRNFLNIAEGD 67
Query: 104 LNRR----VSETSNVEIS---CAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L++ V + VEI+ C + + LG+ ++ K S ++ A+ G I
Sbjct: 68 LSQMRASLVRGYTLVEIANEFCLGNYLLLGVGEIKTGGRKRES----ILSNTIEALIGGI 123
Query: 157 AVDT 160
+D+
Sbjct: 124 FLDS 127
>gi|82702876|ref|YP_412442.1| ribonuclease III [Nitrosospira multiformis ATCC 25196]
gi|82410941|gb|ABB75050.1| RNAse III [Nitrosospira multiformis ATCC 25196]
Length = 230
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L +++GYTF+ LLR+A+TH S S +N L LG V++ +V+ + + D+S L
Sbjct: 13 LCRKLGYTFRRPELLRQALTHRSHSIPHNERLEFLGDAVLNCAVAGLIFHHFPDLSEGSL 72
Query: 105 NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGAIAVDT 160
+R + N ++ + L L K++R P+++ A A+ GAI +D
Sbjct: 73 SRIRANLVNQKMLAEL-AQTLELGKLIRFGEGELKSGGDKRPSILADALEAVIGAIYLDA 131
Query: 161 G 161
G
Sbjct: 132 G 132
>gi|416163167|ref|ZP_11606957.1| ribonuclease III [Neisseria meningitidis N1568]
gi|433473087|ref|ZP_20430451.1| ribonuclease III [Neisseria meningitidis 97021]
gi|433481636|ref|ZP_20438901.1| ribonuclease III [Neisseria meningitidis 2006087]
gi|433483621|ref|ZP_20440851.1| ribonuclease III [Neisseria meningitidis 2002038]
gi|433486741|ref|ZP_20443932.1| ribonuclease III [Neisseria meningitidis 97014]
gi|325127806|gb|EGC50714.1| ribonuclease III [Neisseria meningitidis N1568]
gi|432210688|gb|ELK66644.1| ribonuclease III [Neisseria meningitidis 97021]
gi|432217467|gb|ELK73335.1| ribonuclease III [Neisseria meningitidis 2006087]
gi|432220959|gb|ELK76775.1| ribonuclease III [Neisseria meningitidis 97014]
gi|432221746|gb|ELK77551.1| ribonuclease III [Neisseria meningitidis 2002038]
Length = 239
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKRLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|399020225|ref|ZP_10722364.1| ribonuclease III [Herbaspirillum sp. CF444]
gi|398095877|gb|EJL86209.1| ribonuclease III [Herbaspirillum sp. CF444]
Length = 351
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQ ++G+TFK LL++A+TH S S +N L LG +++ V+ L ++ I DL
Sbjct: 6 LQNRLGHTFKDATLLQQALTHRSHSSLHNERLEFLGDSILNCVVASLLFDRYSKIDEGDL 65
Query: 105 NR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
+R V + S EI+ +D L + +R+ + P+++ A+FGAI
Sbjct: 66 SRLRANLVKQQSLYEIAQRLD-----LSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120
Query: 157 AVDTG 161
+D G
Sbjct: 121 FLDAG 125
>gi|385339662|ref|YP_005893534.1| ribonuclease III [Neisseria meningitidis G2136]
gi|385342312|ref|YP_005896183.1| ribonuclease III [Neisseria meningitidis M01-240149]
gi|385851647|ref|YP_005898162.1| ribonuclease III [Neisseria meningitidis M04-240196]
gi|385856843|ref|YP_005903355.1| ribonuclease III [Neisseria meningitidis NZ-05/33]
gi|416173168|ref|ZP_11608873.1| ribonuclease III [Neisseria meningitidis OX99.30304]
gi|416183917|ref|ZP_11612823.1| ribonuclease III [Neisseria meningitidis M13399]
gi|416188464|ref|ZP_11614778.1| ribonuclease III [Neisseria meningitidis M0579]
gi|416206101|ref|ZP_11620696.1| ribonuclease III [Neisseria meningitidis 961-5945]
gi|416214123|ref|ZP_11622718.1| ribonuclease III [Neisseria meningitidis M01-240013]
gi|418287888|ref|ZP_12900423.1| ribonuclease III [Neisseria meningitidis NM233]
gi|418290155|ref|ZP_12902334.1| ribonuclease III [Neisseria meningitidis NM220]
gi|421556795|ref|ZP_16002705.1| ribonuclease III [Neisseria meningitidis 80179]
gi|421567078|ref|ZP_16012815.1| ribonuclease III [Neisseria meningitidis NM3001]
gi|433466835|ref|ZP_20424292.1| ribonuclease III [Neisseria meningitidis 87255]
gi|325129784|gb|EGC52592.1| ribonuclease III [Neisseria meningitidis OX99.30304]
gi|325133799|gb|EGC56455.1| ribonuclease III [Neisseria meningitidis M13399]
gi|325135722|gb|EGC58334.1| ribonuclease III [Neisseria meningitidis M0579]
gi|325141941|gb|EGC64381.1| ribonuclease III [Neisseria meningitidis 961-5945]
gi|325143926|gb|EGC66236.1| ribonuclease III [Neisseria meningitidis M01-240013]
gi|325197906|gb|ADY93362.1| ribonuclease III [Neisseria meningitidis G2136]
gi|325202518|gb|ADY97972.1| ribonuclease III [Neisseria meningitidis M01-240149]
gi|325206470|gb|ADZ01923.1| ribonuclease III [Neisseria meningitidis M04-240196]
gi|325207732|gb|ADZ03184.1| ribonuclease III [Neisseria meningitidis NZ-05/33]
gi|372202115|gb|EHP15971.1| ribonuclease III [Neisseria meningitidis NM220]
gi|372202932|gb|EHP16681.1| ribonuclease III [Neisseria meningitidis NM233]
gi|402336049|gb|EJU71311.1| ribonuclease III [Neisseria meningitidis 80179]
gi|402344389|gb|EJU79529.1| ribonuclease III [Neisseria meningitidis NM3001]
gi|432203411|gb|ELK59462.1| ribonuclease III [Neisseria meningitidis 87255]
Length = 239
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKRLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDTFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|260437031|ref|ZP_05790847.1| ribonuclease III [Butyrivibrio crossotus DSM 2876]
gi|292810340|gb|EFF69545.1| ribonuclease III [Butyrivibrio crossotus DSM 2876]
Length = 227
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 12/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
++ +K+IGY + ++ LL+ A+THSS+ E NN L LG V++ +VS L N
Sbjct: 3 IKEFEKKIGYAYNNVDLLKLALTHSSYGNEVYKDKLHNNERLEFLGDAVLELTVSDYLFN 62
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
++ ++ L+R+ + E + A+ + L +V+ + T ++V A
Sbjct: 63 EECNMPEGSLSRKRASIV-CEPTLAMCAREINLPEVLFMGKGEELTGGRFRDSIVSDAME 121
Query: 151 AIFGAIAVDTG 161
A+ G+I +D G
Sbjct: 122 AVIGSIYLDGG 132
>gi|385328021|ref|YP_005882324.1| putative ribonuclease III [Neisseria meningitidis alpha710]
gi|308388873|gb|ADO31193.1| putative ribonuclease III [Neisseria meningitidis alpha710]
Length = 267
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 41 AIQKRLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDTFPKLTEGE 100
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 101 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 156
Query: 157 AVDT 160
+ D
Sbjct: 157 SFDA 160
>gi|57168805|ref|ZP_00367936.1| ribonuclease III Cj1635c [Campylobacter coli RM2228]
gi|419537870|ref|ZP_14077235.1| ribonuclease III [Campylobacter coli 90-3]
gi|419540283|ref|ZP_14079521.1| ribonuclease III [Campylobacter coli Z163]
gi|419544520|ref|ZP_14083476.1| ribonuclease III [Campylobacter coli 2553]
gi|419546878|ref|ZP_14085623.1| ribonuclease III [Campylobacter coli 2680]
gi|419549476|ref|ZP_14088066.1| ribonuclease III [Campylobacter coli 2685]
gi|419553184|ref|ZP_14091447.1| ribonuclease III [Campylobacter coli 2692]
gi|419555536|ref|ZP_14093549.1| ribonuclease III [Campylobacter coli 84-2]
gi|419557967|ref|ZP_14095857.1| ribonuclease III [Campylobacter coli 80352]
gi|419560500|ref|ZP_14098141.1| ribonuclease III [Campylobacter coli 86119]
gi|419562240|ref|ZP_14099759.1| ribonuclease III [Campylobacter coli 1091]
gi|419565239|ref|ZP_14102588.1| ribonuclease III [Campylobacter coli 1098]
gi|419566594|ref|ZP_14103848.1| ribonuclease III [Campylobacter coli 1148]
gi|419569978|ref|ZP_14107033.1| ribonuclease III [Campylobacter coli 7--1]
gi|419571931|ref|ZP_14108869.1| ribonuclease III [Campylobacter coli 132-6]
gi|419574263|ref|ZP_14111024.1| ribonuclease III [Campylobacter coli 1891]
gi|419575098|ref|ZP_14111795.1| ribonuclease III [Campylobacter coli 1909]
gi|419577226|ref|ZP_14113783.1| ribonuclease III [Campylobacter coli 59-2]
gi|419579706|ref|ZP_14116108.1| ribonuclease III [Campylobacter coli 1948]
gi|419581745|ref|ZP_14118035.1| ribonuclease III [Campylobacter coli 1957]
gi|419591030|ref|ZP_14126389.1| ribonuclease III [Campylobacter coli 37/05]
gi|419592712|ref|ZP_14127956.1| ribonuclease III [Campylobacter coli LMG 9854]
gi|419595070|ref|ZP_14130184.1| ribonuclease III [Campylobacter coli LMG 23336]
gi|419596512|ref|ZP_14131515.1| ribonuclease III [Campylobacter coli LMG 23341]
gi|419599217|ref|ZP_14134083.1| ribonuclease III [Campylobacter coli LMG 23342]
gi|419600989|ref|ZP_14135725.1| ribonuclease III [Campylobacter coli LMG 23344]
gi|419602764|ref|ZP_14137338.1| ribonuclease III [Campylobacter coli 151-9]
gi|419604007|ref|ZP_14138482.1| ribonuclease III [Campylobacter coli LMG 9853]
gi|419606995|ref|ZP_14141345.1| ribonuclease III [Campylobacter coli LMG 9860]
gi|419608702|ref|ZP_14142887.1| ribonuclease III [Campylobacter coli H6]
gi|419611039|ref|ZP_14145088.1| ribonuclease III [Campylobacter coli H8]
gi|419612541|ref|ZP_14146417.1| ribonuclease III [Campylobacter coli H9]
gi|419614811|ref|ZP_14148580.1| ribonuclease III [Campylobacter coli H56]
gi|419617063|ref|ZP_14150694.1| ribonuclease III [Campylobacter coli Z156]
gi|57019852|gb|EAL56535.1| ribonuclease III Cj1635c [Campylobacter coli RM2228]
gi|380517237|gb|EIA43356.1| ribonuclease III [Campylobacter coli Z163]
gi|380519417|gb|EIA45495.1| ribonuclease III [Campylobacter coli 90-3]
gi|380521629|gb|EIA47349.1| ribonuclease III [Campylobacter coli 2680]
gi|380525099|gb|EIA50654.1| ribonuclease III [Campylobacter coli 2553]
gi|380525687|gb|EIA51192.1| ribonuclease III [Campylobacter coli 2685]
gi|380529448|gb|EIA54604.1| ribonuclease III [Campylobacter coli 2692]
gi|380535994|gb|EIA60660.1| ribonuclease III [Campylobacter coli 84-2]
gi|380536990|gb|EIA61575.1| ribonuclease III [Campylobacter coli 86119]
gi|380540084|gb|EIA64409.1| ribonuclease III [Campylobacter coli 1098]
gi|380540610|gb|EIA64910.1| ribonuclease III [Campylobacter coli 80352]
gi|380541447|gb|EIA65709.1| ribonuclease III [Campylobacter coli 1091]
gi|380545945|gb|EIA69908.1| ribonuclease III [Campylobacter coli 1148]
gi|380548527|gb|EIA72429.1| ribonuclease III [Campylobacter coli 7--1]
gi|380549901|gb|EIA73629.1| ribonuclease III [Campylobacter coli 1891]
gi|380552684|gb|EIA76239.1| ribonuclease III [Campylobacter coli 132-6]
gi|380554296|gb|EIA77773.1| ribonuclease III [Campylobacter coli 1909]
gi|380556681|gb|EIA79925.1| ribonuclease III [Campylobacter coli 1948]
gi|380557699|gb|EIA80902.1| ribonuclease III [Campylobacter coli 59-2]
gi|380558478|gb|EIA81656.1| ribonuclease III [Campylobacter coli 1957]
gi|380569220|gb|EIA91667.1| ribonuclease III [Campylobacter coli 37/05]
gi|380571779|gb|EIA94137.1| ribonuclease III [Campylobacter coli LMG 9854]
gi|380574438|gb|EIA96541.1| ribonuclease III [Campylobacter coli LMG 23336]
gi|380575832|gb|EIA97900.1| ribonuclease III [Campylobacter coli LMG 23342]
gi|380575953|gb|EIA98015.1| ribonuclease III [Campylobacter coli LMG 23341]
gi|380580494|gb|EIB02242.1| ribonuclease III [Campylobacter coli 151-9]
gi|380580987|gb|EIB02719.1| ribonuclease III [Campylobacter coli LMG 9853]
gi|380582338|gb|EIB04002.1| ribonuclease III [Campylobacter coli LMG 23344]
gi|380585061|gb|EIB06434.1| ribonuclease III [Campylobacter coli H6]
gi|380586154|gb|EIB07466.1| ribonuclease III [Campylobacter coli LMG 9860]
gi|380588981|gb|EIB10066.1| ribonuclease III [Campylobacter coli H8]
gi|380590213|gb|EIB11238.1| ribonuclease III [Campylobacter coli H9]
gi|380592232|gb|EIB13144.1| ribonuclease III [Campylobacter coli H56]
gi|380594164|gb|EIB14970.1| ribonuclease III [Campylobacter coli Z156]
Length = 224
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++++ Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IELLEQKLAYKFKDKDLLIHALTHKSFKKPYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + + + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALEAIMGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|167581151|ref|ZP_02374025.1| ribonuclease III [Burkholderia thailandensis TXDOH]
Length = 464
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
++ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDL 60
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ DG+ LG ++ P+++ AF AI GA+
Sbjct: 61 SRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIGAVF 116
Query: 158 VDTG 161
+D G
Sbjct: 117 LDGG 120
>gi|419585204|ref|ZP_14121265.1| ribonuclease III [Campylobacter coli 202/04]
gi|380562621|gb|EIA85477.1| ribonuclease III [Campylobacter coli 202/04]
Length = 224
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++++ Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IELLEQKLAYKFKDKDLLIHALTHKSFKKPYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + + + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALEAIMGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|385337645|ref|YP_005891518.1| ribonuclease III [Neisseria meningitidis WUE 2594]
gi|319410059|emb|CBY90393.1| ribonuclease III [Neisseria meningitidis WUE 2594]
Length = 310
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
A +QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++
Sbjct: 81 AHAAIQKKLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLT 140
Query: 101 PKDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+R V+E E++ + DG++LG ++ P+++ A A+F
Sbjct: 141 EGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMF 196
Query: 154 GAIAVDT 160
A++ D
Sbjct: 197 AAVSFDA 203
>gi|330815986|ref|YP_004359691.1| Ribonuclease III [Burkholderia gladioli BSR3]
gi|327368379|gb|AEA59735.1| Ribonuclease III [Burkholderia gladioli BSR3]
Length = 403
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 6 LESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDL 65
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ +G+ LG ++ P+++ AF AI GA+
Sbjct: 66 SRVRANLVKQQSLYEIAQALNISEGLRLGEGELR----SGGFRRPSILADAFEAIIGAVF 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDGG 125
>gi|305432452|ref|ZP_07401614.1| ribonuclease III [Campylobacter coli JV20]
gi|304444491|gb|EFM37142.1| ribonuclease III [Campylobacter coli JV20]
Length = 225
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++++ Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 5 IELLEQKLAYKFKDKDLLIHALTHKSFKKPYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 64
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + + + N P+++ A AI GAI
Sbjct: 65 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALEAIMGAIH 124
Query: 158 VDTG 161
++ G
Sbjct: 125 LEAG 128
>gi|167619235|ref|ZP_02387866.1| ribonuclease III [Burkholderia thailandensis Bt4]
Length = 434
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
++ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDL 60
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ DG+ LG ++ P+++ AF AI GA+
Sbjct: 61 SRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIGAVF 116
Query: 158 VDTG 161
+D G
Sbjct: 117 LDGG 120
>gi|15924223|ref|NP_371757.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50]
gi|156979554|ref|YP_001441813.1| ribonuclease III [Staphylococcus aureus subsp. aureus Mu3]
gi|255006020|ref|ZP_05144621.2| ribonuclease III [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|22654068|sp|Q931T1.1|RNC_STAAM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043357|sp|A7X1J9.1|RNC_STAA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|14247003|dbj|BAB57395.1| RNase III [Staphylococcus aureus subsp. aureus Mu50]
gi|156721689|dbj|BAF78106.1| RNase III [Staphylococcus aureus subsp. aureus Mu3]
Length = 243
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>gi|419537205|ref|ZP_14076664.1| ribonuclease III [Campylobacter coli 111-3]
gi|419568861|ref|ZP_14105990.1| ribonuclease III [Campylobacter coli 1417]
gi|419583483|ref|ZP_14119664.1| ribonuclease III [Campylobacter coli 1961]
gi|419587626|ref|ZP_14123539.1| ribonuclease III [Campylobacter coli 67-8]
gi|380515558|gb|EIA41717.1| ribonuclease III [Campylobacter coli 111-3]
gi|380544843|gb|EIA68849.1| ribonuclease III [Campylobacter coli 1417]
gi|380563074|gb|EIA85920.1| ribonuclease III [Campylobacter coli 1961]
gi|380563757|gb|EIA86585.1| ribonuclease III [Campylobacter coli 67-8]
Length = 224
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++++ Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IELLEQKLAYKFKDKDLLIHALTHKSFKKPYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + + + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALEAIMGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|332532635|ref|ZP_08408511.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505]
gi|332037851|gb|EGI74300.1| ribonuclease III [Pseudoalteromonas haloplanktis ANT/505]
Length = 225
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L K+IGY F GLL +AMTH S ++N L LG ++ ++ L K DL
Sbjct: 8 LYKKIGYEFADQGLLEQAMTHRSHKGQHNERLEFLGDSILSFVIANALYAKFPKAREGDL 67
Query: 105 NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDT 160
+R S + + A G+ GL +R+ P + + + A AI GA +D+
Sbjct: 68 SRMRSTLVRGQ-TLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAAFLDS 126
Query: 161 GKCDDAGDVFLRVHS 175
G D GD+ L +
Sbjct: 127 G-IDSCGDLILSWYE 140
>gi|315638039|ref|ZP_07893224.1| ribonuclease III [Campylobacter upsaliensis JV21]
gi|315481887|gb|EFU72506.1| ribonuclease III [Campylobacter upsaliensis JV21]
Length = 224
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE L+ ++ Y FK LL A+TH S + NN L LG V+D V L +K + +
Sbjct: 4 LELLEAKLNYKFKDQKLLIYALTHKSAKKNYNNERLEFLGDAVLDLVVGEFLFHKFKNEA 63
Query: 101 PKDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFG 154
DL++ V+E S +I+ +++ LG + ++ + N T P+++ AF A+ G
Sbjct: 64 EGDLSKLRAALVNEKSFAKIATSLN---LGAFIFMSIAEQNNGGKTKPSILSDAFEALIG 120
Query: 155 AIAVDTG 161
A+ ++ G
Sbjct: 121 ALHLEAG 127
>gi|15926816|ref|NP_374349.1| ribonuclease III [Staphylococcus aureus subsp. aureus N315]
gi|21282845|ref|NP_645933.1| ribonuclease III [Staphylococcus aureus subsp. aureus MW2]
gi|49483396|ref|YP_040620.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA252]
gi|49486072|ref|YP_043293.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSSA476]
gi|57651802|ref|YP_186108.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL]
gi|87160069|ref|YP_493823.1| ribonuclease III [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194940|ref|YP_499740.1| ribonuclease III [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|148267724|ref|YP_001246667.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH9]
gi|150393782|ref|YP_001316457.1| ribonuclease III [Staphylococcus aureus subsp. aureus JH1]
gi|151221355|ref|YP_001332177.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman]
gi|161509405|ref|YP_001575064.1| ribonuclease III [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221142023|ref|ZP_03566516.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|253315591|ref|ZP_04838804.1| ribonuclease III [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|253731850|ref|ZP_04866015.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253733529|ref|ZP_04867694.1| RNase III [Staphylococcus aureus subsp. aureus TCH130]
gi|257425287|ref|ZP_05601712.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
gi|257427947|ref|ZP_05604345.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430580|ref|ZP_05606962.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397]
gi|257433341|ref|ZP_05609699.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410]
gi|257436183|ref|ZP_05612230.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
gi|257795711|ref|ZP_05644690.1| ribonuclease III [Staphylococcus aureus A9781]
gi|258415935|ref|ZP_05682205.1| ribonuclease III [Staphylococcus aureus A9763]
gi|258419682|ref|ZP_05682649.1| ribonuclease III [Staphylococcus aureus A9719]
gi|258423926|ref|ZP_05686811.1| ribonuclease III [Staphylococcus aureus A9635]
gi|258434853|ref|ZP_05688927.1| ribonuclease III [Staphylococcus aureus A9299]
gi|258444571|ref|ZP_05692900.1| ribonuclease III [Staphylococcus aureus A8115]
gi|258447596|ref|ZP_05695740.1| ribonuclease III [Staphylococcus aureus A6300]
gi|258449438|ref|ZP_05697541.1| ribonuclease III [Staphylococcus aureus A6224]
gi|258454817|ref|ZP_05702781.1| ribonuclease III [Staphylococcus aureus A5937]
gi|262048131|ref|ZP_06021018.1| RNase III [Staphylococcus aureus D30]
gi|262051862|ref|ZP_06024078.1| RNase III [Staphylococcus aureus 930918-3]
gi|269202849|ref|YP_003282118.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98]
gi|282892720|ref|ZP_06300955.1| ribonuclease III [Staphylococcus aureus A8117]
gi|282903787|ref|ZP_06311675.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160]
gi|282905551|ref|ZP_06313406.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260]
gi|282908526|ref|ZP_06316356.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282910805|ref|ZP_06318608.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
gi|282914009|ref|ZP_06321796.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899]
gi|282916483|ref|ZP_06324245.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139]
gi|282918931|ref|ZP_06326666.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427]
gi|282920016|ref|ZP_06327745.1| ribonuclease III [Staphylococcus aureus A9765]
gi|282924054|ref|ZP_06331730.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101]
gi|282927574|ref|ZP_06335190.1| ribonuclease III [Staphylococcus aureus A10102]
gi|283770295|ref|ZP_06343187.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19]
gi|283957975|ref|ZP_06375426.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97]
gi|284024157|ref|ZP_06378555.1| ribonuclease III [Staphylococcus aureus subsp. aureus 132]
gi|293501041|ref|ZP_06666892.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424]
gi|293510001|ref|ZP_06668709.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809]
gi|293526589|ref|ZP_06671274.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015]
gi|294848227|ref|ZP_06788974.1| ribonuclease III [Staphylococcus aureus A9754]
gi|295407172|ref|ZP_06816973.1| ribonuclease III [Staphylococcus aureus A8819]
gi|295427719|ref|ZP_06820351.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296274790|ref|ZP_06857297.1| ribonuclease III [Staphylococcus aureus subsp. aureus MR1]
gi|297208123|ref|ZP_06924554.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297245941|ref|ZP_06929800.1| ribonuclease III [Staphylococcus aureus A8796]
gi|297591322|ref|ZP_06949960.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8]
gi|300912203|ref|ZP_07129646.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70]
gi|304381203|ref|ZP_07363856.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|379014424|ref|YP_005290660.1| ribonuclease III [Staphylococcus aureus subsp. aureus VC40]
gi|379020942|ref|YP_005297604.1| ribonuclease III [Staphylococcus aureus subsp. aureus M013]
gi|384547477|ref|YP_005736730.1| Ribonuclease III [Staphylococcus aureus subsp. aureus ED133]
gi|384549988|ref|YP_005739240.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
JKD6159]
gi|384861827|ref|YP_005744547.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|384864460|ref|YP_005749819.1| ribonuclease III [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|384867884|ref|YP_005748080.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60]
gi|384869767|ref|YP_005752481.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus T0131]
gi|385781461|ref|YP_005757632.1| ribonuclease III [Staphylococcus aureus subsp. aureus 11819-97]
gi|386728916|ref|YP_006195299.1| ribonuclease III [Staphylococcus aureus subsp. aureus 71193]
gi|386830768|ref|YP_006237422.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387142842|ref|YP_005731235.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
TW20]
gi|387150376|ref|YP_005741940.1| Ribonuclease III [Staphylococcus aureus 04-02981]
gi|387602508|ref|YP_005734029.1| ribonuclease III [Staphylococcus aureus subsp. aureus ST398]
gi|387780342|ref|YP_005755140.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
LGA251]
gi|404478573|ref|YP_006710003.1| ribonuclease III [Staphylococcus aureus 08BA02176]
gi|415683823|ref|ZP_11449025.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS00]
gi|415686422|ref|ZP_11450511.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS01]
gi|415691082|ref|ZP_11453321.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS03]
gi|416839277|ref|ZP_11902671.1| ribonuclease III [Staphylococcus aureus O11]
gi|416847441|ref|ZP_11907163.1| ribonuclease III [Staphylococcus aureus O46]
gi|417650101|ref|ZP_12299878.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21189]
gi|417651508|ref|ZP_12301271.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21172]
gi|417653242|ref|ZP_12302976.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21193]
gi|417797282|ref|ZP_12444480.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21305]
gi|417797852|ref|ZP_12445038.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21310]
gi|417802647|ref|ZP_12449704.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21318]
gi|417887065|ref|ZP_12531204.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21195]
gi|417891736|ref|ZP_12535793.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21200]
gi|417892225|ref|ZP_12536279.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21201]
gi|417896147|ref|ZP_12540114.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21235]
gi|417899962|ref|ZP_12543861.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21259]
gi|417901830|ref|ZP_12545706.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21266]
gi|417903389|ref|ZP_12547236.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21269]
gi|418281364|ref|ZP_12894175.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21178]
gi|418282895|ref|ZP_12895652.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21202]
gi|418286395|ref|ZP_12899041.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21209]
gi|418308712|ref|ZP_12920318.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21194]
gi|418312603|ref|ZP_12924112.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21334]
gi|418316130|ref|ZP_12927574.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21340]
gi|418317682|ref|ZP_12929098.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21232]
gi|418321917|ref|ZP_12933256.1| ribonuclease III [Staphylococcus aureus subsp. aureus VCU006]
gi|418424373|ref|ZP_12997495.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS1]
gi|418427368|ref|ZP_13000380.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS2]
gi|418430209|ref|ZP_13003125.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS3a]
gi|418433174|ref|ZP_13005951.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS4]
gi|418436845|ref|ZP_13008647.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS5]
gi|418439717|ref|ZP_13011424.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS6]
gi|418442769|ref|ZP_13014371.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS7]
gi|418445828|ref|ZP_13017304.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS8]
gi|418448772|ref|ZP_13020164.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS9]
gi|418451596|ref|ZP_13022930.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS10]
gi|418454652|ref|ZP_13025914.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS11a]
gi|418457528|ref|ZP_13028731.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS11b]
gi|418561408|ref|ZP_13125899.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21262]
gi|418566585|ref|ZP_13130958.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21264]
gi|418569081|ref|ZP_13133421.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21272]
gi|418570863|ref|ZP_13135124.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21283]
gi|418572298|ref|ZP_13136510.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21333]
gi|418579064|ref|ZP_13143159.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1114]
gi|418582067|ref|ZP_13146145.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1605]
gi|418597732|ref|ZP_13161254.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21342]
gi|418599612|ref|ZP_13163092.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21343]
gi|418603104|ref|ZP_13166495.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21345]
gi|418638013|ref|ZP_13200316.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-3]
gi|418642636|ref|ZP_13204822.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-24]
gi|418645812|ref|ZP_13207930.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-55]
gi|418647514|ref|ZP_13209578.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-88]
gi|418649495|ref|ZP_13211523.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-91]
gi|418654805|ref|ZP_13216701.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-99]
gi|418655394|ref|ZP_13217257.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-105]
gi|418658909|ref|ZP_13220606.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-111]
gi|418661553|ref|ZP_13223138.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-122]
gi|418873581|ref|ZP_13427876.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-125]
gi|418875168|ref|ZP_13429428.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC93]
gi|418878082|ref|ZP_13432317.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1165]
gi|418880910|ref|ZP_13435129.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1213]
gi|418883839|ref|ZP_13438034.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1769]
gi|418886494|ref|ZP_13440642.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1150]
gi|418889024|ref|ZP_13443160.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1524]
gi|418891866|ref|ZP_13445981.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1176]
gi|418894932|ref|ZP_13449027.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1057]
gi|418897770|ref|ZP_13451840.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC341D]
gi|418900640|ref|ZP_13454697.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1214]
gi|418903442|ref|ZP_13457483.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1770]
gi|418906168|ref|ZP_13460195.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC345D]
gi|418908944|ref|ZP_13462947.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG149]
gi|418911840|ref|ZP_13465823.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG547]
gi|418914331|ref|ZP_13468303.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC340D]
gi|418917028|ref|ZP_13470987.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1267]
gi|418920310|ref|ZP_13474243.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC348]
gi|418925466|ref|ZP_13479368.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG2018]
gi|418928490|ref|ZP_13482376.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1612]
gi|418931303|ref|ZP_13485144.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1750]
gi|418934135|ref|ZP_13487958.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC128]
gi|418946941|ref|ZP_13499340.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-157]
gi|418950559|ref|ZP_13502723.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-160]
gi|418955496|ref|ZP_13507436.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-189]
gi|418980062|ref|ZP_13527850.1| Ribonuclease III [Staphylococcus aureus subsp. aureus DR10]
gi|418982146|ref|ZP_13529854.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1242]
gi|418985813|ref|ZP_13533499.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1500]
gi|418988054|ref|ZP_13535727.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1835]
gi|418991095|ref|ZP_13538756.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1096]
gi|419774363|ref|ZP_14300333.1| ribonuclease III [Staphylococcus aureus subsp. aureus CO-23]
gi|419784967|ref|ZP_14310725.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-M]
gi|421150119|ref|ZP_15609775.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newbould
305]
gi|422742350|ref|ZP_16796356.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA177]
gi|422745536|ref|ZP_16799475.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA131]
gi|424768083|ref|ZP_18195376.1| ribonuclease III [Staphylococcus aureus subsp. aureus CM05]
gi|424785063|ref|ZP_18211866.1| Ribonuclease III [Staphylococcus aureus CN79]
gi|440706059|ref|ZP_20886808.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21282]
gi|440734679|ref|ZP_20914291.1| ribonuclease III [Staphylococcus aureus subsp. aureus DSM 20231]
gi|443636860|ref|ZP_21120953.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21236]
gi|443639588|ref|ZP_21123594.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21196]
gi|448742261|ref|ZP_21724211.1| ribonuclease III [Staphylococcus aureus KT/314250]
gi|448744051|ref|ZP_21725955.1| ribonuclease III [Staphylococcus aureus KT/Y21]
gi|54039243|sp|P66669.1|RNC_STAAW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|54041615|sp|P66668.1|RNC_STAAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56749389|sp|Q6G9Y0.1|RNC_STAAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56749418|sp|Q6GHK2.1|RNC_STAAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|73917582|sp|Q5HGJ9.1|RNC_STAAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|122539710|sp|Q2FZ50.1|RNC_STAA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|123486215|sp|Q2FHK5.1|RNC_STAA3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043358|sp|A6U152.1|RNC_STAA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043359|sp|A5ISB8.1|RNC_STAA9 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043360|sp|A6QGD3.1|RNC_STAAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043361|sp|A8Z3R9.1|RNC_STAAT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|13701033|dbj|BAB42328.1| RNase III [Staphylococcus aureus subsp. aureus N315]
gi|21204284|dbj|BAB94981.1| RNase III [Staphylococcus aureus subsp. aureus MW2]
gi|49241525|emb|CAG40211.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49244515|emb|CAG42944.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57285988|gb|AAW38082.1| ribonuclease III [Staphylococcus aureus subsp. aureus COL]
gi|87126043|gb|ABD20557.1| ribonuclease III [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202498|gb|ABD30308.1| ribonuclease III, putative [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740793|gb|ABQ49091.1| RNAse III [Staphylococcus aureus subsp. aureus JH9]
gi|149946234|gb|ABR52170.1| Ribonuclease III [Staphylococcus aureus subsp. aureus JH1]
gi|150374155|dbj|BAF67415.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newman]
gi|160368214|gb|ABX29185.1| ribonuclease III [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253724449|gb|EES93178.1| RNase III [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253728583|gb|EES97312.1| RNase III [Staphylococcus aureus subsp. aureus TCH130]
gi|257271744|gb|EEV03882.1| ribonuclease III [Staphylococcus aureus subsp. aureus 55/2053]
gi|257274788|gb|EEV06275.1| ribonuclease III [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278708|gb|EEV09327.1| ribonuclease III [Staphylococcus aureus subsp. aureus 68-397]
gi|257281434|gb|EEV11571.1| ribonuclease III [Staphylococcus aureus subsp. aureus E1410]
gi|257284465|gb|EEV14585.1| ribonuclease III [Staphylococcus aureus subsp. aureus M876]
gi|257789683|gb|EEV28023.1| ribonuclease III [Staphylococcus aureus A9781]
gi|257839271|gb|EEV63745.1| ribonuclease III [Staphylococcus aureus A9763]
gi|257844267|gb|EEV68649.1| ribonuclease III [Staphylococcus aureus A9719]
gi|257845955|gb|EEV69984.1| ribonuclease III [Staphylococcus aureus A9635]
gi|257849214|gb|EEV73196.1| ribonuclease III [Staphylococcus aureus A9299]
gi|257850064|gb|EEV74017.1| ribonuclease III [Staphylococcus aureus A8115]
gi|257853787|gb|EEV76746.1| ribonuclease III [Staphylococcus aureus A6300]
gi|257857426|gb|EEV80324.1| ribonuclease III [Staphylococcus aureus A6224]
gi|257863200|gb|EEV85964.1| ribonuclease III [Staphylococcus aureus A5937]
gi|259160263|gb|EEW45291.1| RNase III [Staphylococcus aureus 930918-3]
gi|259163697|gb|EEW48252.1| RNase III [Staphylococcus aureus D30]
gi|262075139|gb|ACY11112.1| ribonuclease III [Staphylococcus aureus subsp. aureus ED98]
gi|269940725|emb|CBI49106.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
TW20]
gi|282314026|gb|EFB44418.1| ribonuclease III [Staphylococcus aureus subsp. aureus C101]
gi|282316741|gb|EFB47115.1| ribonuclease III [Staphylococcus aureus subsp. aureus C427]
gi|282319923|gb|EFB50271.1| ribonuclease III [Staphylococcus aureus subsp. aureus D139]
gi|282322077|gb|EFB52401.1| ribonuclease III [Staphylococcus aureus subsp. aureus M899]
gi|282325410|gb|EFB55719.1| ribonuclease III [Staphylococcus aureus subsp. aureus WBG10049]
gi|282327588|gb|EFB57871.1| ribonuclease III [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282330843|gb|EFB60357.1| ribonuclease III [Staphylococcus aureus subsp. aureus Btn1260]
gi|282590577|gb|EFB95654.1| ribonuclease III [Staphylococcus aureus A10102]
gi|282594732|gb|EFB99716.1| ribonuclease III [Staphylococcus aureus A9765]
gi|282595405|gb|EFC00369.1| ribonuclease III [Staphylococcus aureus subsp. aureus C160]
gi|282764717|gb|EFC04842.1| ribonuclease III [Staphylococcus aureus A8117]
gi|283460442|gb|EFC07532.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus H19]
gi|283470446|emb|CAQ49657.1| ribonuclease III [Staphylococcus aureus subsp. aureus ST398]
gi|283790124|gb|EFC28941.1| ribonuclease III [Staphylococcus aureus subsp. aureus A017934/97]
gi|285816915|gb|ADC37402.1| Ribonuclease III [Staphylococcus aureus 04-02981]
gi|290920661|gb|EFD97724.1| ribonuclease III [Staphylococcus aureus subsp. aureus M1015]
gi|291096046|gb|EFE26307.1| ribonuclease III [Staphylococcus aureus subsp. aureus 58-424]
gi|291466945|gb|EFF09463.1| ribonuclease III [Staphylococcus aureus subsp. aureus M809]
gi|294825027|gb|EFG41449.1| ribonuclease III [Staphylococcus aureus A9754]
gi|294968025|gb|EFG44053.1| ribonuclease III [Staphylococcus aureus A8819]
gi|295128077|gb|EFG57711.1| ribonuclease III [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296887366|gb|EFH26268.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297177105|gb|EFH36359.1| ribonuclease III [Staphylococcus aureus A8796]
gi|297576208|gb|EFH94924.1| ribonuclease III [Staphylococcus aureus subsp. aureus MN8]
gi|298694526|gb|ADI97748.1| Ribonuclease III [Staphylococcus aureus subsp. aureus ED133]
gi|300886449|gb|EFK81651.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH70]
gi|302332837|gb|ADL23030.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302751056|gb|ADL65233.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|304340186|gb|EFM06127.1| ribonuclease III [Staphylococcus aureus subsp. aureus ATCC BAA-39]
gi|312438389|gb|ADQ77460.1| ribonuclease III [Staphylococcus aureus subsp. aureus TCH60]
gi|312829627|emb|CBX34469.1| ribonuclease III [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315131026|gb|EFT87010.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS03]
gi|315194121|gb|EFU24514.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS00]
gi|315198472|gb|EFU28801.1| ribonuclease III [Staphylococcus aureus subsp. aureus CGS01]
gi|320140951|gb|EFW32798.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA131]
gi|320144334|gb|EFW36100.1| ribonuclease III [Staphylococcus aureus subsp. aureus MRSA177]
gi|323441008|gb|EGA98715.1| ribonuclease III [Staphylococcus aureus O11]
gi|323442325|gb|EGA99955.1| ribonuclease III [Staphylococcus aureus O46]
gi|329313902|gb|AEB88315.1| Ribonuclease 3 [Staphylococcus aureus subsp. aureus T0131]
gi|329724757|gb|EGG61262.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21189]
gi|329727692|gb|EGG64148.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21172]
gi|329733624|gb|EGG69952.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21193]
gi|334267330|gb|EGL85794.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21305]
gi|334274283|gb|EGL92605.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21318]
gi|334276974|gb|EGL95213.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21310]
gi|341841048|gb|EGS82520.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21235]
gi|341843570|gb|EGS84793.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21259]
gi|341845669|gb|EGS86871.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21266]
gi|341850010|gb|EGS91143.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21269]
gi|341851022|gb|EGS91951.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21200]
gi|341858192|gb|EGS98993.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21201]
gi|341858487|gb|EGS99277.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21195]
gi|344177444|emb|CCC87912.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830251|gb|AEV78229.1| Ribonuclease III [Staphylococcus aureus subsp. aureus M013]
gi|364522450|gb|AEW65200.1| ribonuclease III [Staphylococcus aureus subsp. aureus 11819-97]
gi|365165186|gb|EHM57014.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21178]
gi|365167103|gb|EHM58579.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21209]
gi|365168492|gb|EHM59830.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21202]
gi|365224532|gb|EHM65797.1| ribonuclease III [Staphylococcus aureus subsp. aureus VCU006]
gi|365237738|gb|EHM78581.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21194]
gi|365238248|gb|EHM79085.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21334]
gi|365241801|gb|EHM82536.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21340]
gi|365244950|gb|EHM85602.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21232]
gi|371969855|gb|EHO87293.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21264]
gi|371977619|gb|EHO94883.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21262]
gi|371978266|gb|EHO95516.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21272]
gi|371983043|gb|EHP00191.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21283]
gi|371984782|gb|EHP01891.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21333]
gi|374363121|gb|AEZ37226.1| ribonuclease III [Staphylococcus aureus subsp. aureus VC40]
gi|374393794|gb|EHQ65098.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21342]
gi|374393833|gb|EHQ65136.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21345]
gi|374396270|gb|EHQ67511.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21343]
gi|375014630|gb|EHS08311.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-99]
gi|375015749|gb|EHS09393.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-24]
gi|375022345|gb|EHS15828.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-55]
gi|375023237|gb|EHS16700.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-3]
gi|375029480|gb|EHS22807.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-88]
gi|375029868|gb|EHS23193.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-91]
gi|375037171|gb|EHS30223.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-111]
gi|375037264|gb|EHS30309.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-105]
gi|375038735|gb|EHS31696.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-122]
gi|375366118|gb|EHS70130.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-125]
gi|375370979|gb|EHS74771.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-189]
gi|375376731|gb|EHS80250.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-160]
gi|375377138|gb|EHS80628.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-157]
gi|377694204|gb|EHT18569.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1165]
gi|377694738|gb|EHT19102.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1057]
gi|377697091|gb|EHT21446.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1114]
gi|377703108|gb|EHT27424.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1214]
gi|377704427|gb|EHT28736.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1242]
gi|377705631|gb|EHT29935.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1500]
gi|377710477|gb|EHT34715.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1605]
gi|377714585|gb|EHT38784.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1750]
gi|377714926|gb|EHT39124.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1769]
gi|377719842|gb|EHT44012.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1835]
gi|377723217|gb|EHT47342.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1096]
gi|377725218|gb|EHT49333.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG547]
gi|377725447|gb|EHT49560.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1150]
gi|377731198|gb|EHT55255.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1176]
gi|377731803|gb|EHT55856.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1213]
gi|377738402|gb|EHT62411.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1612]
gi|377742457|gb|EHT66442.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1770]
gi|377744535|gb|EHT68512.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG2018]
gi|377750202|gb|EHT74140.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1267]
gi|377753982|gb|EHT77892.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG149]
gi|377754534|gb|EHT78443.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1524]
gi|377757833|gb|EHT81721.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC340D]
gi|377760805|gb|EHT84681.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC341D]
gi|377765468|gb|EHT89318.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC345D]
gi|377765669|gb|EHT89518.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC348]
gi|377770228|gb|EHT93990.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC93]
gi|377770878|gb|EHT94637.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIGC128]
gi|379992225|gb|EIA13682.1| Ribonuclease III [Staphylococcus aureus subsp. aureus DR10]
gi|383363568|gb|EID40900.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-M]
gi|383971889|gb|EID87951.1| ribonuclease III [Staphylococcus aureus subsp. aureus CO-23]
gi|384230209|gb|AFH69456.1| Ribonuclease III [Staphylococcus aureus subsp. aureus 71193]
gi|385196160|emb|CCG15781.1| putative ribonuclease III [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387718604|gb|EIK06562.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS3a]
gi|387718955|gb|EIK06911.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS2]
gi|387720280|gb|EIK08192.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS1]
gi|387725614|gb|EIK13218.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS4]
gi|387727949|gb|EIK15449.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS5]
gi|387730679|gb|EIK18040.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS6]
gi|387735756|gb|EIK22866.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS8]
gi|387737434|gb|EIK24500.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS7]
gi|387737988|gb|EIK25042.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS9]
gi|387744477|gb|EIK31241.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS10]
gi|387745767|gb|EIK32517.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS11a]
gi|387747260|gb|EIK33969.1| ribonuclease 3 [Staphylococcus aureus subsp. aureus VRS11b]
gi|394329509|gb|EJE55611.1| ribonuclease III [Staphylococcus aureus subsp. aureus str. Newbould
305]
gi|402348720|gb|EJU83699.1| ribonuclease III [Staphylococcus aureus subsp. aureus CM05]
gi|404440062|gb|AFR73255.1| putative ribonuclease III [Staphylococcus aureus 08BA02176]
gi|408423428|emb|CCJ10839.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408425418|emb|CCJ12805.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408427406|emb|CCJ14769.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408429393|emb|CCJ26558.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408431381|emb|CCJ18696.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408433375|emb|CCJ20660.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408435366|emb|CCJ22626.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|408437351|emb|CCJ24594.1| Ribonuclease=3 [Staphylococcus aureus subsp. aureus ST228]
gi|421956473|gb|EKU08802.1| Ribonuclease III [Staphylococcus aureus CN79]
gi|436431707|gb|ELP29060.1| ribonuclease III [Staphylococcus aureus subsp. aureus DSM 20231]
gi|436507590|gb|ELP43270.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21282]
gi|443406795|gb|ELS65366.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21196]
gi|443406837|gb|ELS65407.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21236]
gi|445546976|gb|ELY15252.1| ribonuclease III [Staphylococcus aureus KT/314250]
gi|445562647|gb|ELY18814.1| ribonuclease III [Staphylococcus aureus KT/Y21]
Length = 243
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>gi|387901787|ref|YP_006332126.1| ribonuclease III [Burkholderia sp. KJ006]
gi|387576679|gb|AFJ85395.1| Ribonuclease III [Burkholderia sp. KJ006]
Length = 412
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
++ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDL 60
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ DG+ LG ++ P+++ AF AI GA+
Sbjct: 61 SRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIGAVF 116
Query: 158 VDTG 161
+D G
Sbjct: 117 LDGG 120
>gi|419589670|ref|ZP_14125455.1| ribonuclease III [Campylobacter coli 317/04]
gi|380566873|gb|EIA89433.1| ribonuclease III [Campylobacter coli 317/04]
Length = 224
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++++ Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IELLEQKLAYKFKDKDLLIHALTHKSFKKPYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + + + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALEAIMGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|254673607|emb|CBA09131.1| ribonuclease III [Neisseria meningitidis alpha275]
gi|389606247|emb|CCA45160.1| ribonuclease III [Neisseria meningitidis alpha522]
Length = 267
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 41 AIQKRLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDTFPKLTEGE 100
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 101 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 156
Query: 157 AVDT 160
+ D
Sbjct: 157 SFDA 160
>gi|52548547|gb|AAU82396.1| ribonuclease III [uncultured archaeon GZfos17C7]
Length = 248
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 8/123 (6%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-----NNRALGILGGYVIDTSVSLRL--LNKDI 97
L+K IG+ FK+I LL A+T S+S E + + L LG V+ ++ L L+K
Sbjct: 3 LEKLIGHKFKNIALLEEAITTGSYSNEHPDSSDYQRLEFLGDRVLSLILAEELFKLSKSA 62
Query: 98 DISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+ + +E N + A G ++GL+ +R + K P V+ F AI GA+
Sbjct: 63 SLDEGKMTFLKAELEN-NLRLAEYGENMGLRNYIRANEKREDIRPKVIADVFEAICGAVY 121
Query: 158 VDT 160
DT
Sbjct: 122 QDT 124
>gi|323489554|ref|ZP_08094781.1| ribonuclease 3 [Planococcus donghaensis MPA1U2]
gi|323396685|gb|EGA89504.1| ribonuclease 3 [Planococcus donghaensis MPA1U2]
Length = 251
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Query: 25 RAANDQR---FKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNR 74
R N Q+ K S+ A E LQK++ TFK LL +A THSS+ E +N
Sbjct: 5 RKTNHQKPGVLKESA--KAAFEQLQKELNITFKKPTLLYQAFTHSSYVNEHRRKQFTDNE 62
Query: 75 ALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS 134
L LG V++ SVS L K ++S +L ++ E S + LG K + +
Sbjct: 63 RLEFLGDAVLELSVSHYLYMKYPEMSEGELT-KLRAAIVCEPSLVLFANELGFGKYILLG 121
Query: 135 PKTN----STVPAVVCGAFRAIFGAIAVDTG 161
T PA++ F + GA+ +D G
Sbjct: 122 KGEELTGGRTRPALLADVFESYIGALYLDQG 152
>gi|258452531|ref|ZP_05700537.1| ribonuclease III [Staphylococcus aureus A5948]
gi|257859749|gb|EEV82591.1| ribonuclease III [Staphylococcus aureus A5948]
Length = 243
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>gi|418309743|ref|ZP_12921294.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21331]
gi|365237866|gb|EHM78705.1| ribonuclease III [Staphylococcus aureus subsp. aureus 21331]
Length = 243
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>gi|351731183|ref|ZP_08948874.1| ribonuclease III [Acidovorax radicis N35]
Length = 227
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ ++ + F LL+RA TH SFS ++N L LG V++ +V+ LL + + P
Sbjct: 5 LQALQARLQHVFSDPSLLQRATTHRSFSADHNERLEFLGDSVLNLAVA-SLLYRQLSALP 63
Query: 102 K-DLNRRVSETSNVEISCAVDGMHLGLQ--KVVRV----SPKTNSTVPAVVCGAFRAIFG 154
+ DL+R +N+ + + LGL+ +V+R+ S P+++ A A+ G
Sbjct: 64 EGDLSR---VRANLVKQDTLHQLALGLKISEVLRLGEGESKSGGQQRPSILADALEALIG 120
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 121 AVYLDAG 127
>gi|254804568|ref|YP_003082789.1| ribonuclease III [Neisseria meningitidis alpha14]
gi|254668109|emb|CBA04665.1| ribonuclease III family protein [Neisseria meningitidis alpha14]
gi|254670529|emb|CBA06329.1| ribonuclease III [Neisseria meningitidis alpha153]
Length = 310
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
A +QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++
Sbjct: 81 AHAAIQKRLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDTFPKLT 140
Query: 101 PKDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+R V+E E++ + DG++LG ++ P+++ A A+F
Sbjct: 141 EGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMF 196
Query: 154 GAIAVDT 160
A++ D
Sbjct: 197 AAVSFDA 203
>gi|300691972|ref|YP_003752967.1| ribonuclease III (RNase III) [Ralstonia solanacearum PSI07]
gi|299079032|emb|CBJ51694.1| Ribonuclease III (RNase III) [Ralstonia solanacearum PSI07]
gi|344170593|emb|CCA83015.1| ribonuclease III (RNase III) [blood disease bacterium R229]
gi|344174221|emb|CCA86003.1| ribonuclease III (RNase III) [Ralstonia syzygii R24]
Length = 256
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+LE LQ+++GY F LL++A+TH S S +N L LG +++ +V+ L +
Sbjct: 2 SLEALQQRLGYRFSKPELLQQALTHRSHSAMHNERLEFLGDSILNCAVADMLYGMFGKLD 61
Query: 101 PKDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
DL+R V + + EI+ + D + LG ++ P+++ A AIF
Sbjct: 62 EGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGEL----KSGGFRRPSILADALEAIF 117
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 118 GAVFLDGG 125
>gi|257138458|ref|ZP_05586720.1| ribonuclease III [Burkholderia thailandensis E264]
Length = 464
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
++ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDL 60
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ DG+ LG ++ P+++ AF AI GA+
Sbjct: 61 SRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIGAVF 116
Query: 158 VDTG 161
+D G
Sbjct: 117 LDGG 120
>gi|340362287|ref|ZP_08684677.1| ribonuclease III [Neisseria macacae ATCC 33926]
gi|339887626|gb|EGQ77168.1| ribonuclease III [Neisseria macacae ATCC 33926]
Length = 271
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+Q ++GY FK LL++A+TH S+ +NN +G +++ +V+ L + ++ +
Sbjct: 45 AIQNKLGYHFKDTALLQQALTHRSYHAKNNERFEFVGDSILNYTVAKMLFDAFPKLTEGE 104
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E EI+ + DG++LG ++ P+++ A A+F A+
Sbjct: 105 LSRLRASLVNEGVLAEIALEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 160
Query: 157 AVDT 160
+ D
Sbjct: 161 SFDA 164
>gi|347750528|ref|YP_004858093.1| ribonuclease III [Bacillus coagulans 36D1]
gi|347583046|gb|AEO99312.1| ribonuclease III [Bacillus coagulans 36D1]
Length = 246
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
LQ+Q+G F+ + LL++A THSS+ E +N L LG V++ +VS L N+
Sbjct: 19 LQEQLGIHFQDVNLLKQAFTHSSYVNEHPEKRRHDNERLEFLGDAVLELTVSHYLFNRFP 78
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFG 154
++ ++ + R S + + +H G ++ + T PA++ F A G
Sbjct: 79 SMNEGEMTKLRASVVCEPSLVIFANELHFGEYILLGKGEEMTGGRTRPALLADVFEAFIG 138
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 139 ALYLDKG 145
>gi|359440809|ref|ZP_09230722.1| ribonuclease III [Pseudoalteromonas sp. BSi20429]
gi|392533274|ref|ZP_10280411.1| RNase III, ds RNA [Pseudoalteromonas arctica A 37-1-2]
gi|358037515|dbj|GAA66971.1| ribonuclease III [Pseudoalteromonas sp. BSi20429]
Length = 225
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L K+IGY F GLL +AMTH S ++N L LG ++ ++ L K DL
Sbjct: 8 LYKKIGYEFADQGLLEQAMTHRSHKGQHNERLEFLGDSILSFVIANALYAKFPKAREGDL 67
Query: 105 NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDT 160
+R S + + A G+ GL +R+ P + + + A AI GA +D+
Sbjct: 68 SRMRSTLVRGQ-TLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAAFLDS 126
Query: 161 GKCDDAGDVFL 171
G D GD+ L
Sbjct: 127 G-IDSCGDLIL 136
>gi|160900693|ref|YP_001566275.1| ribonuclease III [Delftia acidovorans SPH-1]
gi|333913009|ref|YP_004486741.1| ribonuclease 3 [Delftia sp. Cs1-4]
gi|238687167|sp|A9BNJ5.1|RNC_DELAS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|160366277|gb|ABX37890.1| Ribonuclease III [Delftia acidovorans SPH-1]
gi|333743209|gb|AEF88386.1| Ribonuclease 3 [Delftia sp. Cs1-4]
Length = 227
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L LQ ++ + F LL+RA+TH SFS +NN L LG V++ ++S L + +
Sbjct: 5 LNALQLRLQHQFAEPALLQRAVTHRSFSADNNERLEFLGDSVLNLAISSLLYQRLSSMPE 64
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRV----SPKTNSTVPAVVCGAFRAIFGAIA 157
DL+ RV E + + L L ++R+ S P+++ A A+ GA+
Sbjct: 65 GDLS-RVRANLVKEGTLHQIALRLQLPDLLRLGEGESKSGGKQRPSILADAVEALIGAVY 123
Query: 158 VDTG 161
+D G
Sbjct: 124 LDAG 127
>gi|115351064|ref|YP_772903.1| ribonuclease III [Burkholderia ambifaria AMMD]
gi|115281052|gb|ABI86569.1| RNAse III [Burkholderia ambifaria AMMD]
Length = 425
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 6 LESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDL 65
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ +G+ LG ++ P+++ AF AI GA+
Sbjct: 66 SRVRANLVKQQSLYEIAQALNISEGLRLGEGELR----SGGFRRPSILADAFEAIIGAVF 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDGG 125
>gi|170749855|ref|YP_001756115.1| ribonuclease III [Methylobacterium radiotolerans JCM 2831]
gi|170656377|gb|ACB25432.1| Ribonuclease III [Methylobacterium radiotolerans JCM 2831]
Length = 259
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 16/154 (10%)
Query: 18 ISSSFQVRA-ANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENN--- 73
+ + Q RA A +R P TALE ++IG++F LL RA+TH+S +
Sbjct: 6 LDDAAQPRANARSRRAHKPRPPLTALE---ERIGHSFGDQDLLTRALTHTSKASGRGGSY 62
Query: 74 RALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVD-----GMHLGL- 127
+ L LG V+ +V+ RL + DL+RR++ E AV G HL L
Sbjct: 63 QRLEFLGDRVLGLAVADRLYGAFPEADEGDLSRRLAALVRRETCAAVAASWEVGPHLILG 122
Query: 128 QKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
Q V + N T+ A VC AI GAI +D G
Sbjct: 123 QGEVMGGGRRNQTILADVC---EAILGAIYLDAG 153
>gi|288576266|ref|ZP_05978490.2| ribonuclease III [Neisseria mucosa ATCC 25996]
gi|288565937|gb|EFC87497.1| ribonuclease III [Neisseria mucosa ATCC 25996]
Length = 271
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+Q ++GY FK LL++A+TH S+ +NN +G +++ +V+ L + ++ +
Sbjct: 45 AIQNKLGYHFKDTALLQQALTHRSYHAKNNERFEFVGDSILNYTVAKMLFDAFPKLTEGE 104
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E EI+ + DG++LG ++ P+++ A A+F A+
Sbjct: 105 LSRLRASLVNEGVLAEIALEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 160
Query: 157 AVDT 160
+ D
Sbjct: 161 SFDA 164
>gi|73541939|ref|YP_296459.1| ribonuclease III [Ralstonia eutropha JMP134]
gi|90101640|sp|Q46Z18.1|RNC_RALEJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|72119352|gb|AAZ61615.1| RNAse III [Ralstonia eutropha JMP134]
Length = 256
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ+++GY F LL++A+TH S S ++N L LG V++ +V+ L +
Sbjct: 3 LDALQQRLGYRFSKPELLQQALTHRSHSAQHNERLEFLGDSVLNCAVADMLFGMFGKLDE 62
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
DL+R + + + M L L +V+R+ + P+++ A AI GA+
Sbjct: 63 GDLSRVRANLVKQQALYEIAQM-LQLSEVLRLGEGELKSGGFRRPSILADALEAIVGAVF 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDAG 125
>gi|365845433|ref|ZP_09386204.1| ribonuclease III [Flavonifractor plautii ATCC 29863]
gi|373118094|ref|ZP_09532230.1| ribonuclease III [Lachnospiraceae bacterium 7_1_58FAA]
gi|364560272|gb|EHM38214.1| ribonuclease III [Flavonifractor plautii ATCC 29863]
gi|371667658|gb|EHO32777.1| ribonuclease III [Lachnospiraceae bacterium 7_1_58FAA]
Length = 225
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
+E L++++GY F + L A+THSS++ EN N L LG V+ V+ L
Sbjct: 1 MEALEEKLGYRFTNRAFLENALTHSSYANENKAKGLQSNERLEFLGDSVLGMVVADYLFR 60
Query: 95 KDIDISPKDLNRR----VSETSNVEIS-CAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
D+ DL R V E S VE++ C G +L L K P+++ A
Sbjct: 61 THPDLPEGDLTRTRAALVCEGSLVEVAQCLELGAYLKLGKGEEAG--GGRERPSIIADAV 118
Query: 150 RAIFGAIAVDTG 161
A+ A+ +D G
Sbjct: 119 EAVLAAVYLDGG 130
>gi|167720558|ref|ZP_02403794.1| ribonuclease III [Burkholderia pseudomallei DM98]
Length = 438
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
++ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDL 60
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ DG+ LG ++ P+++ AF AI GA+
Sbjct: 61 SRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIGAVF 116
Query: 158 VDTG 161
+D G
Sbjct: 117 LDGG 120
>gi|255066864|ref|ZP_05318719.1| ribonuclease III [Neisseria sicca ATCC 29256]
gi|419797125|ref|ZP_14322625.1| ribonuclease III [Neisseria sicca VK64]
gi|255048939|gb|EET44403.1| ribonuclease III [Neisseria sicca ATCC 29256]
gi|385698701|gb|EIG29047.1| ribonuclease III [Neisseria sicca VK64]
Length = 239
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+Q ++GY FK LL++A+TH S+ +NN +G +++ +V+ L + ++ +
Sbjct: 13 AIQNKLGYHFKDTALLQQALTHRSYHAKNNERFEFVGDSILNYTVAKMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E EI+ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEIALEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|162447098|ref|YP_001620230.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A]
gi|161985205|gb|ABX80854.1| dsRNA-specific ribonuclease III [Acholeplasma laidlawii PG-8A]
Length = 219
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEEN----NRALGILGGYVIDTSVSLRLLNKDIDIS 100
L KQ+ K I L +A+TH+S++ EN N L LG VI+ +S L D
Sbjct: 4 LLKQLNIETKHIDLYLQALTHTSYAHENQTDHNERLEFLGDAVIELMMSTYLFTHDQSNQ 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDT 160
RR E + + + L+ +R+ P+++ AF A FGA+ +D
Sbjct: 64 GVLTKRRAQAVR--EEALVLYAQKMDLESKMRLGNGEQIAKPSMIADAFEAFFGALYMDQ 121
Query: 161 GKCDDAGDVFLRV 173
G D ++F +V
Sbjct: 122 G-FDKTYEIFNKV 133
>gi|349609319|ref|ZP_08888717.1| ribonuclease 3 [Neisseria sp. GT4A_CT1]
gi|348612313|gb|EGY61934.1| ribonuclease 3 [Neisseria sp. GT4A_CT1]
Length = 239
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+Q ++GY FK LL++A+TH S+ +NN +G +++ +V+ L + ++ +
Sbjct: 13 AIQNKLGYHFKDTALLQQALTHRSYHAKNNERFEFVGDSILNYTVAKMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E EI+ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEIALEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|269214809|ref|ZP_05987185.2| ribonuclease III [Neisseria lactamica ATCC 23970]
gi|269208949|gb|EEZ75404.1| ribonuclease III [Neisseria lactamica ATCC 23970]
Length = 267
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 41 AIQKKLGYAFRDISLLRQALTHRSCHTKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 100
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 101 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 156
Query: 157 AVDT 160
+ D
Sbjct: 157 SFDA 160
>gi|365089561|ref|ZP_09328334.1| ribonuclease III [Acidovorax sp. NO-1]
gi|363416691|gb|EHL23792.1| ribonuclease III [Acidovorax sp. NO-1]
Length = 227
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 11/128 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
L+ LQ ++ + F LL+RA TH SFS ++N L LG V++ +V+ LL + +
Sbjct: 4 GLQALQSRLQHVFSDPSLLQRATTHRSFSADHNERLEFLGDSVLNLAVA-SLLYRQLSAL 62
Query: 101 PK-DLNRRVSETSNVEISCAVDGMHLGLQ--KVVRV----SPKTNSTVPAVVCGAFRAIF 153
P+ DL+R +N+ + + LGL+ +V+R+ S P+++ A A+
Sbjct: 63 PEGDLSR---VRANLVKQDTLHQLALGLKLSEVLRLGEGESRSGGQQRPSILADALEALI 119
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 120 GAVYLDAG 127
>gi|327399771|ref|YP_004340640.1| ribonuclease 3 [Hippea maritima DSM 10411]
gi|327182400|gb|AEA34581.1| Ribonuclease 3 [Hippea maritima DSM 10411]
Length = 234
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE---NNRALGILGGYVIDTSVSLRLLNKDIDISP 101
++++GYTFK+ LL+RA+TH S+ ++ +N L LG V++ V+ L+N +I
Sbjct: 13 FEERLGYTFKNKELLKRALTHRSYVKDKAKSNERLEFLGDAVLELVVTEFLINNYKNIDE 72
Query: 102 KDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIAV 158
L++ R + + +S + L Q +V S K + +++ AF AI GAI +
Sbjct: 73 GKLSKIRAASVNTKTLSKLARKLELSDQILVGRSEKKEGITNNDSILEDAFEAIVGAIYL 132
Query: 159 DTG 161
D G
Sbjct: 133 DGG 135
>gi|422111338|ref|ZP_16380967.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378209|emb|CBX23153.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 239
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDISLLRQALTHRSCHTKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|297250746|ref|ZP_06864987.2| ribonuclease III [Neisseria polysaccharea ATCC 43768]
gi|296838254|gb|EFH22192.1| ribonuclease III [Neisseria polysaccharea ATCC 43768]
Length = 267
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 41 AIQKRLGYAFRDISLLRQALTHRSCHTKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 100
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 101 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 156
Query: 157 AVDT 160
+ D
Sbjct: 157 SFDA 160
>gi|71907657|ref|YP_285244.1| ribonuclease III [Dechloromonas aromatica RCB]
gi|90101622|sp|Q47EF7.1|RNC_DECAR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71847278|gb|AAZ46774.1| RNAse III [Dechloromonas aromatica RCB]
Length = 222
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
+++ K++ + F L R A+TH SF NN L LG V+D ++ L ++ D+
Sbjct: 4 QSVAKKLNHCFSDQALFRTALTHRSFGTPNNERLEFLGDGVLDFVIAASLYHRFPDLPEG 63
Query: 103 DLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGAIAV 158
DL+R + E + + L + +R+ + P+++ A A+FGAI +
Sbjct: 64 DLSRLRANLVRQETLHRL-ALELNIGAFLRLGEGELKSGGAQRPSILADALEALFGAIYL 122
Query: 159 DTG 161
D G
Sbjct: 123 DAG 125
>gi|313668838|ref|YP_004049122.1| ribonuclease III [Neisseria lactamica 020-06]
gi|313006300|emb|CBN87763.1| putative ribonuclease III [Neisseria lactamica 020-06]
Length = 239
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDISLLRQALTHRSCHTKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|172060069|ref|YP_001807721.1| ribonuclease III [Burkholderia ambifaria MC40-6]
gi|171992586|gb|ACB63505.1| Ribonuclease III [Burkholderia ambifaria MC40-6]
Length = 425
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 6 LESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFSKLDEGDL 65
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ +G+ LG ++ P+++ AF AI GA+
Sbjct: 66 SRVRANLVKQQSLYEIAQALNISEGLRLGEGELR----SGGFRRPSILADAFEAIIGAVF 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDGG 125
>gi|385854832|ref|YP_005901345.1| ribonuclease III [Neisseria meningitidis M01-240355]
gi|421537637|ref|ZP_15983820.1| ribonuclease III [Neisseria meningitidis 93003]
gi|325203773|gb|ADY99226.1| ribonuclease III [Neisseria meningitidis M01-240355]
gi|402318304|gb|EJU53827.1| ribonuclease III [Neisseria meningitidis 93003]
Length = 239
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDISLLRQALTHRSCHTKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|226199978|ref|ZP_03795528.1| ribonuclease III [Burkholderia pseudomallei Pakistan 9]
gi|386860993|ref|YP_006273942.1| ribonuclease III [Burkholderia pseudomallei 1026b]
gi|403519510|ref|YP_006653644.1| ribonuclease III [Burkholderia pseudomallei BPC006]
gi|418533464|ref|ZP_13099331.1| ribonuclease III [Burkholderia pseudomallei 1026a]
gi|418540256|ref|ZP_13105815.1| ribonuclease III [Burkholderia pseudomallei 1258a]
gi|418546503|ref|ZP_13111721.1| ribonuclease III [Burkholderia pseudomallei 1258b]
gi|225928034|gb|EEH24071.1| ribonuclease III [Burkholderia pseudomallei Pakistan 9]
gi|385361499|gb|EIF67384.1| ribonuclease III [Burkholderia pseudomallei 1026a]
gi|385362397|gb|EIF68214.1| ribonuclease III [Burkholderia pseudomallei 1258a]
gi|385364557|gb|EIF70269.1| ribonuclease III [Burkholderia pseudomallei 1258b]
gi|385658121|gb|AFI65544.1| ribonuclease III [Burkholderia pseudomallei 1026b]
gi|403075153|gb|AFR16733.1| ribonuclease III [Burkholderia pseudomallei BPC006]
Length = 462
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
++ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDL 60
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ DG+ LG ++ P+++ AF AI GA+
Sbjct: 61 SRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIGAVF 116
Query: 158 VDTG 161
+D G
Sbjct: 117 LDGG 120
>gi|90109239|pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
gi|90109240|pdb|2EZ6|B Chain B, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
Length = 221
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 18/129 (13%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE L+K++GYTFK LL +A+TH S+S +E+ L LG +++ + + LL + S
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGNALVNFFI-VDLL---VQYS 59
Query: 101 PKDLNRRVSETSNVEISCAVD------GMHLGLQKVVRVSP-KTNSTVPAVVCGAFRAIF 153
P N+R S ++ + L L K +R+ K N T ++ F A++
Sbjct: 60 P---NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINET---IIGDVFEALW 113
Query: 154 GAIAVDTGK 162
A+ +D+G+
Sbjct: 114 AAVYIDSGR 122
>gi|418380399|ref|ZP_12966375.1| ribonuclease III [Burkholderia pseudomallei 354a]
gi|418552738|ref|ZP_13117589.1| ribonuclease III [Burkholderia pseudomallei 354e]
gi|385372655|gb|EIF77756.1| ribonuclease III [Burkholderia pseudomallei 354e]
gi|385377441|gb|EIF82020.1| ribonuclease III [Burkholderia pseudomallei 354a]
Length = 462
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
++ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDL 60
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ DG+ LG ++ P+++ AF AI GA+
Sbjct: 61 SRVRANLVKQQSLYEIAQALNISDGLRLGEGELR----SGGFRRPSILADAFEAIIGAVF 116
Query: 158 VDTG 161
+D G
Sbjct: 117 LDGG 120
>gi|23098981|ref|NP_692447.1| ribonuclease III [Oceanobacillus iheyensis HTE831]
gi|38372423|sp|Q8ER05.1|RNC_OCEIH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|22777209|dbj|BAC13482.1| ribonuclease III [Oceanobacillus iheyensis HTE831]
Length = 228
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 16/142 (11%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
L++ +G +F+ LL+ A THSS+ E +N L LG V++ +VS L +
Sbjct: 6 LEEHLGISFQQKALLKEAFTHSSYVNEHRKQRLSDNERLEFLGDAVLELAVSQYLYRNNK 65
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
D+ ++ + R + + + + G K +R+ T PA++ AF A
Sbjct: 66 DMPEGEMTKLRAAIVCEPSLKNFAEELEFG--KFLRLGKGEQQTGGRERPAILADAFEAF 123
Query: 153 FGAIAVDTGKCDDAGDVFLRVH 174
GA+ +D G D+ D FL +H
Sbjct: 124 LGALYLDQG-FDNVLD-FLNIH 143
>gi|377821338|ref|YP_004977709.1| ribonuclease III [Burkholderia sp. YI23]
gi|357936173|gb|AET89732.1| ribonuclease III [Burkholderia sp. YI23]
Length = 362
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L+ ++ Y F++ LLR+AMTH S S +N L LG V++ V+ L + + DL
Sbjct: 6 LESRLRYEFRNAELLRQAMTHRSHSATHNERLEFLGDSVLNCVVAALLFQRFGKLDEGDL 65
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ +G+ LG ++ P+++ AIFGAI
Sbjct: 66 SRVRANLVKQQSLYEIAQALNVSEGLRLGEGELR----SGGFRRPSILADTLEAIFGAIF 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDGG 125
>gi|419659778|ref|ZP_14190291.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-979]
gi|419667284|ref|ZP_14197262.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-10]
gi|380638585|gb|EIB56135.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-979]
gi|380646268|gb|EIB63243.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-10]
Length = 224
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG ++ V+ + N P+++ AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDTLEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|375110957|ref|ZP_09757171.1| RNAse III [Alishewanella jeotgali KCTC 22429]
gi|374568989|gb|EHR40158.1| RNAse III [Alishewanella jeotgali KCTC 22429]
Length = 226
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 37 PFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKD 96
P +L L +++GY F + LL +A+TH S ++N L LG ++ ++ L +
Sbjct: 2 PMQKSLSPLMRKLGYQFNQLSLLEQALTHRSCKGQHNERLEFLGDALLGLIIAEALFARF 61
Query: 97 IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
DL R S ++ A LGL +R+ P + +++ A AI
Sbjct: 62 PQTREGDLTRMRSALVK-GVTLASIAQELGLSDFLRLGPGELKSGGFRRESILADALEAI 120
Query: 153 FGAIAVDTG 161
GAI +D+G
Sbjct: 121 LGAIYLDSG 129
>gi|161869625|ref|YP_001598793.1| ribonuclease III [Neisseria meningitidis 053442]
gi|161595178|gb|ABX72838.1| ribonuclease III [Neisseria meningitidis 053442]
Length = 310
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
A +QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++
Sbjct: 81 AHAAIQKKLGYAFRDISLLRQALTHRSCHTKHNERFEFVGDSILNYTVARMLFDAFPKLT 140
Query: 101 PKDLNR----RVSETSNVEISCAVD---GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+R V+E E++ +D G++LG ++ P+++ A A+F
Sbjct: 141 EGELSRLRASLVNEGVLAEMAAEMDVGEGLYLGAGEL----KSGGFRRPSILADAMEAMF 196
Query: 154 GAIAVDT 160
A++ D
Sbjct: 197 AAVSFDA 203
>gi|205355648|ref|ZP_03222418.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
gi|205346425|gb|EDZ33058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
Length = 225
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 5 IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 64
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG ++ V+ + N P+++ AI GAI
Sbjct: 65 EGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDTLEAIIGAIH 124
Query: 158 VDTG 161
++ G
Sbjct: 125 LEAG 128
>gi|379795598|ref|YP_005325596.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356872588|emb|CCE58927.1| ribonuclease III [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 243
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+ +I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYHNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGAMYLDQG 146
>gi|381209990|ref|ZP_09917061.1| ribonuclease III [Lentibacillus sp. Grbi]
Length = 227
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
L L++Q+ TF LL++A THSS+ E +N L LG V++ VS L
Sbjct: 3 LSHLEQQLDITFNDQSLLKQAFTHSSYVNEHRDKNFSDNERLEFLGDAVLELGVSQYLYK 62
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
+ ++ DL + V E S VE S +D G +L L K S PA++ F
Sbjct: 63 QKERLAEGDLTKLRASIVCEPSLVEFSRELDFGDYLFLGKGEEQSGGRER--PAILADVF 120
Query: 150 RAIFGAIAVDTG 161
A GA+ +D G
Sbjct: 121 EAFLGALYLDQG 132
>gi|365873819|ref|ZP_09413352.1| ribonuclease III [Thermanaerovibrio velox DSM 12556]
gi|363983906|gb|EHM10113.1| ribonuclease III [Thermanaerovibrio velox DSM 12556]
Length = 227
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 23/141 (16%)
Query: 35 SSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTSVS 89
S ++E LQK +GY F LL A+THSSF+ E+ N L LG VI V+
Sbjct: 4 SQDLERSIEALQKAVGYRFSDTQLLIEALTHSSFANESGLSYCNERLEFLGDSVIGLCVA 63
Query: 90 LRLLNKDIDISPKDLNRRVSETSNVEISCA-------VDGM--HLGLQKVVRVSPKTNST 140
L + P + R+++ + C G+ HL L K ++ N
Sbjct: 64 EELFIR----YPSEREGRLTKMRARVVCCEALANAARTAGLADHLRLGKALK-----NGA 114
Query: 141 VPAVVCGAFRAIFGAIAVDTG 161
+++ AF A+ GA+ +D G
Sbjct: 115 TDSILADAFEALLGAVYLDGG 135
>gi|397169628|ref|ZP_10493060.1| RNAse III [Alishewanella aestuarii B11]
gi|396088932|gb|EJI86510.1| RNAse III [Alishewanella aestuarii B11]
Length = 226
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 37 PFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKD 96
P +L L +++GY F + LL +A+TH S ++N L LG ++ ++ L +
Sbjct: 2 PMQKSLSPLMRKLGYQFNQLSLLEQALTHRSCKGQHNERLEFLGDALLGLIIAEALFARF 61
Query: 97 IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
DL R S ++ A LGL +R+ P + +++ A AI
Sbjct: 62 PQTREGDLTRMRSALVKG-VTLASIAQELGLSDFLRLGPGELKSGGFRRESILADALEAI 120
Query: 153 FGAIAVDTG 161
GAI +D+G
Sbjct: 121 LGAIYLDSG 129
>gi|409405764|ref|ZP_11254226.1| dsRNA-specific ribonuclease [Herbaspirillum sp. GW103]
gi|386434313|gb|EIJ47138.1| dsRNA-specific ribonuclease [Herbaspirillum sp. GW103]
Length = 330
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQ+++G+ FK LL++A+TH S S +N L LG V++ V+ L + I DL
Sbjct: 11 LQQRLGHNFKDASLLQQALTHRSHSALHNERLEFLGDSVLNCVVASLLFERYDKIDEGDL 70
Query: 105 NR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
+R V + S EI+ L L + +R+ + P+++ A+FGAI
Sbjct: 71 SRLRANLVKQQSLYEIA-----QRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 125
Query: 157 AVDTG 161
+D+G
Sbjct: 126 FLDSG 130
>gi|297568930|ref|YP_003690274.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2]
gi|296924845|gb|ADH85655.1| ribonuclease III [Desulfurivibrio alkaliphilus AHT2]
Length = 232
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 12/126 (9%)
Query: 47 KQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDIDI 99
+++GY F LLR+A+TH SF+ E +N L LG V+D +V L + +
Sbjct: 12 QRLGYCFHDPQLLRQALTHRSFTAEGGGRGRPHNERLEFLGDAVLDLAVGELLYRRHPKM 71
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRV----SPKTNSTVPAVVCGAFRAIFGA 155
+L+RR + N E A GL +++ + + P+++ AF A+ GA
Sbjct: 72 REGELSRRRAALVN-EAHLARMARRTGLDELLLLGRGEAQSGGRDKPSILADAFEALLGA 130
Query: 156 IAVDTG 161
+ +D G
Sbjct: 131 VYLDGG 136
>gi|308048449|ref|YP_003912015.1| RNAse III [Ferrimonas balearica DSM 9799]
gi|307630639|gb|ADN74941.1| RNAse III [Ferrimonas balearica DSM 9799]
Length = 224
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L LQ +GY FK I LL +A+TH S + ++N L LG V+ ++ L + ++
Sbjct: 6 LTRLQDALGYQFKDIALLNQALTHRSAASQHNERLEYLGDAVLSFVIAEALYLRFPKVAE 65
Query: 102 KDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
D+ R R S V + A G L L V+++ P + +++ A AI GA+
Sbjct: 66 GDMTRMRASLVKGV--TLAELGRELALGDVIKLGPGELKSGGFRRESILADAVEAILGAV 123
Query: 157 AVDTG 161
+D G
Sbjct: 124 YLDGG 128
>gi|419542137|ref|ZP_14081268.1| ribonuclease III [Campylobacter coli 2548]
gi|380523896|gb|EIA49530.1| ribonuclease III [Campylobacter coli 2548]
Length = 224
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + + + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENNGGKEKPSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|395004365|ref|ZP_10388425.1| ribonuclease III, partial [Acidovorax sp. CF316]
gi|394317704|gb|EJE54208.1| ribonuclease III, partial [Acidovorax sp. CF316]
Length = 206
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
+ +L+ LQ ++ + F LL+RA+TH SFS ++N L LG V++ +V+ L +
Sbjct: 1 MSPSLQALQDRLQHPFSDPSLLQRAITHRSFSADHNERLEFLGDSVLNLAVASLLYQRLG 60
Query: 98 DISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRV----SPKTNSTVPAVVCGAFRAIF 153
+ DL+ RV + + + L + +V+R+ S P+++ A A+
Sbjct: 61 SLPEGDLS-RVRANLVKQDTLHQLALRLRVSEVLRLGEGESKSGGHQRPSILADALEALI 119
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 120 GAVYLDAG 127
>gi|261855986|ref|YP_003263269.1| ribonuclease III [Halothiobacillus neapolitanus c2]
gi|261836455|gb|ACX96222.1| ribonuclease III [Halothiobacillus neapolitanus c2]
Length = 243
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 32 FKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLR 91
K SSPF TA E L + IG TF S LL A+ H S NN L LG V++ ++ +
Sbjct: 4 LKPSSPFVTAPEKLAQHIGITFASPELLEMALRHRSAGNMNNERLEFLGDAVLNLVIANQ 63
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCG 147
L + +L+R + E S AV L L + + P + +++
Sbjct: 64 LYTMHSKATEGELSRWRASLVREE-SLAVIARELDLGSYLVLGPGELKSGGFRRDSILAD 122
Query: 148 AFRAIFGAIAVDTG 161
A A GA+ +D G
Sbjct: 123 ALEATIGAVYLDQG 136
>gi|57234229|ref|YP_181741.1| ribonuclease III [Dehalococcoides ethenogenes 195]
gi|90101623|sp|Q3Z7Q8.1|RNC_DEHE1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|57224677|gb|AAW39734.1| ribonuclease III [Dehalococcoides ethenogenes 195]
Length = 237
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 15/151 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L L+K +G F+++ LL +A+ H+S+ EN N + LG V+ + RL +
Sbjct: 4 LTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRLYH 63
Query: 95 KDIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
DI DL R V S V ++ ++ G +L L + S PA + GAF
Sbjct: 64 DFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDASK--GRFKPANLAGAF 121
Query: 150 RAIFGAIAVDTGKCDDAGDVFLRVHSGEVGK 180
A+ AI +D G D +V R+ E+ +
Sbjct: 122 EAVLAAIYLDKG-IDATREVIFRLFKTEMER 151
>gi|406903549|gb|EKD45592.1| hypothetical protein ACD_69C00217G0003 [uncultured bacterium]
Length = 224
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
E L +++GY F+++GLL RA+ H S + +N L LG V++ ++ L + ++
Sbjct: 4 EVLSERLGYCFRNLGLLSRALRHRSMGKISNERLEFLGDAVLNFIIAAELFYRYPEMKEG 63
Query: 103 DLNRRVSETSNVEISCAV-------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGA 155
+L+R + N E+ + D + G ++ PK S ++ A AI GA
Sbjct: 64 ELSRLRANLVNGEVLADLASELYIGDHLQFGSGELRSGGPKRKS----ILADAMEAIIGA 119
Query: 156 IAVDTG 161
+ +D G
Sbjct: 120 MYLDGG 125
>gi|225847889|ref|YP_002728052.1| ribonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644365|gb|ACN99415.1| ribonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
Length = 238
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Query: 33 KTSSP-FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVID 85
K +P F +E L+K + Y FK LL A+TH SF E + L LG V+
Sbjct: 2 KIENPEFLRRVENLEKLLDYNFKDKSLLLAAITHRSFVAEYPVKLKDYEVLEFLGDSVLS 61
Query: 86 TSVSLRLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVP 142
VS L+ + D DL++ R + S +S ++LG ++ K+ S
Sbjct: 62 LIVSEILIKQFPDAREGDLSQLRSAIVSEAYLSKLAKLLNLGQFVLISKGEKSQKGSERD 121
Query: 143 AVVCGAFRAIFGAIAVDT 160
+++C F A+FGAI +DT
Sbjct: 122 SLLCDVFEAVFGAIYIDT 139
>gi|295696065|ref|YP_003589303.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
gi|295411667|gb|ADG06159.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
Length = 231
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 19/137 (13%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSE------ENNRALGILGGYVIDTSVSLRL 92
AT + L+ ++G TF++ LLR+A THSS+ E+N L LG V++ VS L
Sbjct: 2 ATKWDELEARLGITFRNASLLRQAFTHSSYRNEHRGDVEDNERLEFLGDAVLELLVSEFL 61
Query: 93 LNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAV 144
+L R V E S V + A LGL + +R+ + P++
Sbjct: 62 FRAYPRFPEGELTRMRAAIVCEPSLVRFATA-----LGLDQYIRLGRGEEMSGGRRRPSL 116
Query: 145 VCGAFRAIFGAIAVDTG 161
+ + A+ GAI +D G
Sbjct: 117 LADVYEALIGAIFLDQG 133
>gi|418922815|ref|ZP_13476732.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1233]
gi|377736138|gb|EHT60168.1| ribonuclease III [Staphylococcus aureus subsp. aureus CIG1233]
Length = 243
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +G +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGFNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>gi|300704607|ref|YP_003746210.1| ribonuclease III [Ralstonia solanacearum CFBP2957]
gi|421888753|ref|ZP_16319834.1| Ribonuclease III (RNase III) [Ralstonia solanacearum K60-1]
gi|299072271|emb|CBJ43604.1| Ribonuclease III (RNase III) [Ralstonia solanacearum CFBP2957]
gi|378965869|emb|CCF96582.1| Ribonuclease III (RNase III) [Ralstonia solanacearum K60-1]
Length = 256
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L+ LQ+++GY F LL++A+TH S S +N L LG +++ +V+ L +
Sbjct: 2 SLDALQQRLGYRFSKQELLQQALTHRSHSATHNERLEFLGDSILNCAVADMLYGMFGKLD 61
Query: 101 PKDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
DL+R V + + EI+ + D + LG ++ P+++ A AIF
Sbjct: 62 EGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGEL----KSGGFRRPSILADALEAIF 117
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 118 GAVFLDGG 125
>gi|393762804|ref|ZP_10351430.1| ribonuclease III [Alishewanella agri BL06]
gi|392606426|gb|EIW89311.1| ribonuclease III [Alishewanella agri BL06]
Length = 225
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L K++GY F+ I LL +A+TH S ++N L LG ++ ++ L +
Sbjct: 6 LSPLMKKLGYQFQHISLLEQALTHRSCKGQHNERLEFLGDALLGLIIAEALFARFPQTRE 65
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
DL R S ++ A LGL +R+ P + +++ A AI GAI
Sbjct: 66 GDLTRMRSALVK-GVTLASIAQELGLSDFLRLGPGELKSGGYRRESILADALEAILGAIY 124
Query: 158 VDTG 161
+D+G
Sbjct: 125 LDSG 128
>gi|393776447|ref|ZP_10364743.1| ribonuclease III [Ralstonia sp. PBA]
gi|392716836|gb|EIZ04414.1| ribonuclease III [Ralstonia sp. PBA]
Length = 256
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L+ LQ+++GY F LL++A+TH S S +N L LG V++ +V+ L +
Sbjct: 2 SLDVLQQRLGYQFVKAELLQQALTHRSHSAHHNERLEFLGDSVLNCAVADMLYGMFGKLD 61
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
DL+R + + + M L L +V+++ + P+++ A A+FGA+
Sbjct: 62 EGDLSRVRANLVKQQALFEIAQM-LQLSEVLQLGEGELRSGGFRRPSILADALEAVFGAV 120
Query: 157 AVDTG 161
+D G
Sbjct: 121 FLDGG 125
>gi|433536368|ref|ZP_20492877.1| ribonuclease III [Neisseria meningitidis 77221]
gi|432274796|gb|ELL29882.1| ribonuclease III [Neisseria meningitidis 77221]
Length = 239
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LL++A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDISLLQQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGTGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>gi|413958493|ref|ZP_11397732.1| ribonuclease III [Burkholderia sp. SJ98]
gi|413941073|gb|EKS73033.1| ribonuclease III [Burkholderia sp. SJ98]
Length = 365
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
++ ++ Y F++ LLR+AMTH S S +N L LG V++ V+ L + + DL
Sbjct: 1 MESRLRYEFRNAELLRQAMTHRSHSATHNERLEFLGDSVLNCVVAALLFQRFSKLDEGDL 60
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ +G+ LG ++ P+++ AIFGAI
Sbjct: 61 SRVRANLVKQQSLYEIAQALNVSEGLRLGEGELR----SGGFRRPSILADTLEAIFGAIF 116
Query: 158 VDTG 161
+D G
Sbjct: 117 LDGG 120
>gi|134095253|ref|YP_001100328.1| RNase III, ds RNA (partial match) [Herminiimonas arsenicoxydans]
gi|133739156|emb|CAL62205.1| Ribonuclease III [Herminiimonas arsenicoxydans]
Length = 328
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQ ++G+TFK L+++A+TH S S +N L LG +++ V+ L ++ I DL
Sbjct: 6 LQNRLGHTFKDAVLMQQALTHRSHSSVHNERLEFLGDSILNCVVASLLFDRYSKIDEGDL 65
Query: 105 NR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
+R V + S EI+ L L + +R+ + P+++ A+FGAI
Sbjct: 66 SRLRANLVKQQSLYEIA-----QRLELSQFLRLGEGELKSGGFRRPSILADTLEALFGAI 120
Query: 157 AVDTG 161
+D G
Sbjct: 121 FLDAG 125
>gi|349574087|ref|ZP_08886047.1| ribonuclease III [Neisseria shayeganii 871]
gi|348014370|gb|EGY53254.1| ribonuclease III [Neisseria shayeganii 871]
Length = 239
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
ALE LQ +G+TF LL++A+TH S++ NN +G +++ +V+ L + S
Sbjct: 9 ALEHLQAGLGHTFARPELLKQALTHRSYAARNNERFEFVGDGILNYTVARMLFDAFPKCS 68
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
+L+R + N ++ + L + + + P + P+++ A A+F AI
Sbjct: 69 EGELSRLRANLVNQDVLADI-ARRLAVGDALFLGPGELKSGGFDRPSILADAMEAMFAAI 127
Query: 157 AVDTG 161
+ D G
Sbjct: 128 SFDAG 132
>gi|91789485|ref|YP_550437.1| ribonuclease III [Polaromonas sp. JS666]
gi|91698710|gb|ABE45539.1| RNAse III [Polaromonas sp. JS666]
Length = 233
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 18/137 (13%)
Query: 34 TSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLL 93
TSSP L LQK++ + F + LL +A+TH SFS ++N + LG V++ +V+ L
Sbjct: 6 TSSP---DLLALQKRLQHEFSNPKLLAQALTHRSFSADHNERIEFLGDSVLNLAVAGLLY 62
Query: 94 NKDIDISPKDLNRRVSETSNVEISCAVDGMH-----LGLQKVVRVSPKT----NSTVPAV 144
+ ++ DL+R +N+ D +H LGL +++R+ P++
Sbjct: 63 EQLSELPEGDLSR---VRANL---VKQDTLHKLAVTLGLPEMLRLGEGEARSGGQKRPSI 116
Query: 145 VCGAFRAIFGAIAVDTG 161
+ A A+ GA+ +D G
Sbjct: 117 LADALEAVIGAVYLDAG 133
>gi|152981163|ref|YP_001353060.1| ribonuclease III [Janthinobacterium sp. Marseille]
gi|151281240|gb|ABR89650.1| ribonuclease III [Janthinobacterium sp. Marseille]
Length = 322
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 14/137 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L LQ ++G+TFK LL++A+TH S +N L LG +++ V+ L ++ I
Sbjct: 3 LTLLQNRLGHTFKDAVLLQQALTHRSHGSVHNERLEFLGDSILNCVVASLLFDRYSKIDE 62
Query: 102 KDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
DL+R V + S EI+ L L +R+ + P+++ A+F
Sbjct: 63 GDLSRLRANLVKQQSLYEIA-----QRLELSHFLRLGEGELKSGGFRRPSILADTLEALF 117
Query: 154 GAIAVDTGKCDDAGDVF 170
GAI +D G D A DV
Sbjct: 118 GAIFLDAG-FDTARDVI 133
>gi|118474451|ref|YP_892860.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
gi|261885507|ref|ZP_06009546.1| ribonuclease III [Campylobacter fetus subsp. venerealis str.
Azul-94]
gi|189043299|sp|A0RRM7.1|RNC_CAMFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|118413677|gb|ABK82097.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
Length = 223
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSF-SEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
L L++ +GY FK+ LL+ A+TH S S NN L LG V+D V L K D
Sbjct: 4 LNRLEEHLGYKFKNKTLLKEALTHKSMKSSVNNERLEFLGDAVLDLIVGEYLFFKFKDTD 63
Query: 101 PKDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFG 154
+L++ V+E S IS + LG + + N+ P++V A A+ G
Sbjct: 64 EGNLSKLRAALVNEKSFASISSQI---RLGDFLYLSAAEDNNNGRNKPSLVSDALEALMG 120
Query: 155 AIAVDTG 161
AI +++G
Sbjct: 121 AIYLESG 127
>gi|94311354|ref|YP_584564.1| ribonuclease III [Cupriavidus metallidurans CH34]
gi|430806722|ref|ZP_19433837.1| ribonuclease III [Cupriavidus sp. HMR-1]
gi|189043335|sp|Q1LKN1.1|RNC_RALME RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|93355206|gb|ABF09295.1| RNase III [Cupriavidus metallidurans CH34]
gi|429500989|gb|EKZ99339.1| ribonuclease III [Cupriavidus sp. HMR-1]
Length = 256
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ+++GY F LL++A+TH S S ++N L LG V++ +V+ L +
Sbjct: 3 LDALQQRLGYRFSKPELLQQALTHRSHSAQHNERLEFLGDSVLNCAVADMLFGMFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + + EI+ + D + LG ++ P+++ A AI G
Sbjct: 63 GDLSRVRANLVKQQALYEIAQMLQLSDALRLGEGEL----KSGGFRRPSILADALEAIVG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDAG 125
>gi|329850746|ref|ZP_08265591.1| ribonuclease III [Asticcacaulis biprosthecum C19]
gi|328841061|gb|EGF90632.1| ribonuclease III [Asticcacaulis biprosthecum C19]
Length = 236
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 10/130 (7%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSE-----ENNRALGILGGYVIDTSVSLRLLNK 95
A+ET+Q ++GY F+ LL A+TH+S +E +N L LG V+ ++ L++
Sbjct: 12 AIETVQDRLGYRFRDKQLLEVALTHASVAEGARRIADNERLEFLGDRVLGLMIAEALMDN 71
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSP-KTNS---TVPAVVCGAFRA 151
+ +L+RR + E +CA L L + VR++ +T S + P ++ A A
Sbjct: 72 FPEAEEGELSRRFHALVSRE-ACADIARQLSLGEAVRLAAGETKSGGRSNPTILGDACEA 130
Query: 152 IFGAIAVDTG 161
+ A+ VD G
Sbjct: 131 LMAAVYVDGG 140
>gi|187928023|ref|YP_001898510.1| ribonuclease III [Ralstonia pickettii 12J]
gi|238691793|sp|B2U981.1|RNC_RALPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|187724913|gb|ACD26078.1| Ribonuclease III [Ralstonia pickettii 12J]
Length = 256
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L+ LQ+++GY F LL++A+TH S S +N L LG +++ +V+ L +
Sbjct: 2 SLDALQQRLGYRFSKPELLQQALTHRSHSAMHNERLEFLGDSILNCAVADMLYGMFGKLD 61
Query: 101 PKDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
DL+R V + + EI+ + D + LG ++ P+++ A AIF
Sbjct: 62 EGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGEL----KSGGFRRPSILADALEAIF 117
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 118 GAVFLDGG 125
>gi|218780584|ref|YP_002431902.1| ribonuclease III [Desulfatibacillum alkenivorans AK-01]
gi|218761968|gb|ACL04434.1| Ribonuclease III [Desulfatibacillum alkenivorans AK-01]
Length = 535
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 37 PFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVS 89
P L L++ +GY FK+ LL AM HSS+ E +N L LG V++ +VS
Sbjct: 301 PPGKDLGLLEEALGYNFKTPELLLEAMCHSSYVNEHPDCTWTHNERLEFLGDAVLNLAVS 360
Query: 90 LRLLNKDIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAV 144
L++K + DL+R V+E EI+ ++ G HL L K + ++
Sbjct: 361 DMLMSKYSENREGDLSRLRASLVNEGQLAEIARSLGIGQHLLLGKGEARGRGWDKN--SI 418
Query: 145 VCGAFRAIFGAIAVDTGKCD 164
+ + A+FG I D+G D
Sbjct: 419 LADSLEAVFGGIYSDSGYAD 438
>gi|241662605|ref|YP_002980965.1| ribonuclease III [Ralstonia pickettii 12D]
gi|309781187|ref|ZP_07675924.1| ribonuclease III [Ralstonia sp. 5_7_47FAA]
gi|404393900|ref|ZP_10985704.1| ribonuclease 3 [Ralstonia sp. 5_2_56FAA]
gi|240864632|gb|ACS62293.1| ribonuclease III [Ralstonia pickettii 12D]
gi|308920008|gb|EFP65668.1| ribonuclease III [Ralstonia sp. 5_7_47FAA]
gi|348615710|gb|EGY65221.1| ribonuclease 3 [Ralstonia sp. 5_2_56FAA]
Length = 256
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L+ LQ+++GY F LL++A+TH S S +N L LG +++ +V+ L +
Sbjct: 2 SLDALQQRLGYRFSKPELLQQALTHRSHSAMHNERLEFLGDSILNCAVADMLYGMFGKLD 61
Query: 101 PKDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
DL+R V + + EI+ + D + LG ++ P+++ A AIF
Sbjct: 62 EGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGEL----KSGGFRRPSILADALEAIF 117
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 118 GAVFLDGG 125
>gi|225374436|ref|ZP_03751657.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM
16841]
gi|225213674|gb|EEG96028.1| hypothetical protein ROSEINA2194_00051 [Roseburia inulinivorans DSM
16841]
Length = 230
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
LQ +IGY FK LLR+A+THSSF+ E +N L LG V++ S L
Sbjct: 7 LQDKIGYEFKQEKLLRQALTHSSFANEKHLRKHSDNERLEFLGDAVLEIVSSDFLYKAYP 66
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
D S DL + R S ++ M LG K + + N T +++ A A+
Sbjct: 67 DKSEGDLTKLRASLVCEPTLAICTREMELG--KYLFLGKGENLTGGRNRNSILSDALEAV 124
Query: 153 FGAIAVDTG 161
GAI +D G
Sbjct: 125 IGAIYLDGG 133
>gi|83748443|ref|ZP_00945465.1| Ribonuclease III [Ralstonia solanacearum UW551]
gi|207743590|ref|YP_002259982.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum
IPO1609]
gi|386333964|ref|YP_006030135.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum Po82]
gi|421899243|ref|ZP_16329608.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum MolK2]
gi|83724854|gb|EAP72010.1| Ribonuclease III [Ralstonia solanacearum UW551]
gi|206590449|emb|CAQ37411.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum MolK2]
gi|206594989|emb|CAQ61916.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum
IPO1609]
gi|334196414|gb|AEG69599.1| ribonuclease III (rnase III) protein [Ralstonia solanacearum Po82]
Length = 256
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L+ LQ+++GY F LL++A+TH S S +N L LG +++ +V+ L +
Sbjct: 2 SLDALQQRLGYRFSKPELLQQALTHRSHSAMHNERLEFLGDSILNCAVADMLYGMFGKLD 61
Query: 101 PKDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
DL+R V + + EI+ + D + LG ++ P+++ A AIF
Sbjct: 62 EGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGEL----KSGGFRRPSILADALEAIF 117
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 118 GAVFLDGG 125
>gi|319789592|ref|YP_004151225.1| ribonuclease III [Thermovibrio ammonificans HB-1]
gi|317114094|gb|ADU96584.1| ribonuclease III [Thermovibrio ammonificans HB-1]
Length = 236
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 13/136 (9%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSF-----SEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
L++ +GY+FK LL+RA+ H SF + EN L LG VI VS L+ + +
Sbjct: 10 LERLLGYSFKDKELLKRALIHRSFAFEKDTGENYEVLEFLGDAVIGLIVSEELIKRFPEK 69
Query: 100 SPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
S +L++ VSE S +++ ++ G L L K + + +++C F ++FG
Sbjct: 70 SEGELSQIRAFLVSEPSLSKLARTINLGQFLYLGKGEKRTGGREK--DSILCDVFESVFG 127
Query: 155 AIAVDTGKCDDAGDVF 170
A+ +D G + A ++F
Sbjct: 128 ALYLDAG-FEKAKEIF 142
>gi|82750837|ref|YP_416578.1| ribonuclease III [Staphylococcus aureus RF122]
gi|90101646|sp|Q2YXI3.1|RNC_STAAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|82656368|emb|CAI80786.1| Ribonuclease III [Staphylococcus aureus RF122]
Length = 243
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
F A GA+ +D G
Sbjct: 132 DVFEAFIGALYLDQG 146
>gi|154148336|ref|YP_001407136.1| ribonuclease III [Campylobacter hominis ATCC BAA-381]
gi|153804345|gb|ABS51352.1| ribonuclease III [Campylobacter hominis ATCC BAA-381]
Length = 223
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+ ++K +GY FK+ L+ A+TH SF +NN L LG V+D V+ L K
Sbjct: 1 MHEIEKILGYKFKNENHLKLALTHKSFKGAQNNERLEFLGDAVMDLIVAEYLYEKFRHTQ 60
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIA 157
DL++ R + + + + +G + + + N +++ AF AIFGAI
Sbjct: 61 EGDLSKLRAALVNEKSFAKFARKLKIGENLFLSLGEEHNGGRKKDSILSDAFEAIFGAIY 120
Query: 158 VDTG 161
+++G
Sbjct: 121 LESG 124
>gi|255030397|ref|ZP_05302348.1| ribonuclease III [Listeria monocytogenes LO28]
Length = 102
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ FK++ LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAV 120
K D++ + + V E S VE + AV
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAV 93
>gi|388568498|ref|ZP_10154915.1| ribonuclease III [Hydrogenophaga sp. PBC]
gi|388264302|gb|EIK89875.1| ribonuclease III [Hydrogenophaga sp. PBC]
Length = 232
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 8/140 (5%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L LQ ++ + F + LL RA+TH SF ++N L LG V++ ++S L K +D P
Sbjct: 5 LTALQGRLQHRFANPRLLERALTHRSFGADHNERLEFLGDSVLNLAISGLLFEK-LDALP 63
Query: 102 K-DLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
+ DL+R V + + E++ A+ G+ GL+ P+++ A A+ GA+
Sbjct: 64 EGDLSRVRANLVKQDTLFELAQAL-GLSSGLRLGDGEKRSGGHKRPSILADALEAVIGAV 122
Query: 157 AVDTGKCDDAGDVFLRVHSG 176
+D G + A + R++ G
Sbjct: 123 YLDAG-FETASQLVRRLYGG 141
>gi|114770106|ref|ZP_01447644.1| Ribonuclease III [Rhodobacterales bacterium HTCC2255]
gi|114548943|gb|EAU51826.1| Ribonuclease III [alpha proteobacterium HTCC2255]
Length = 226
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE---NNRALGILGGYVIDTSVSLRLLNKDID 98
L K++GY F+ LL +AMTHSS S +N+ LG V+ S+S L +KD D
Sbjct: 7 LTAFSKRLGYDFQKPELLIQAMTHSSLSSTTRGDNQRFEFLGDRVLGLSISDALFHKDSD 66
Query: 99 ISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFG 154
S L R + E +CA + + L + +++ AV+ A A+ G
Sbjct: 67 ASEGLLAPRFNALVRKE-TCAEIAIEIKLGEALKMGRSEMLSGGRRKIAVLGDAMEAVIG 125
Query: 155 AIAVDTGKCDDAGDVFLRVHSGEVGKA 181
A+ +D G + A D+ +R+ S + A
Sbjct: 126 AVYLDAG-FEIARDMVIRLWSNHIDNA 151
>gi|30250251|ref|NP_842321.1| ribonuclease III [Nitrosomonas europaea ATCC 19718]
gi|81436192|sp|Q820I0.1|RNC_NITEU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|30181046|emb|CAD86236.1| rnc; ribonuclease III (RNAse III) protein [Nitrosomonas europaea
ATCC 19718]
Length = 245
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 47 KQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNR 106
+++GYTFK LLR A+TH S NN LG V++ +VS L + + DL R
Sbjct: 29 QKLGYTFKQPDLLREALTHRSLGFPNNERFEFLGDSVLNCAVSTLLFKRFPSLPEGDLTR 88
Query: 107 RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDTG 161
+ N + + LG+ +++ + + P+++ A AI GAI +++G
Sbjct: 89 LRANFVNQQALHRLASA-LGIGELILLGEGERKSGGHHRPSILANAVEAIIGAIYLESG 146
>gi|393766231|ref|ZP_10354787.1| ribonuclease III [Methylobacterium sp. GXF4]
gi|392728012|gb|EIZ85321.1| ribonuclease III [Methylobacterium sp. GXF4]
Length = 259
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 66/140 (47%), Gaps = 12/140 (8%)
Query: 31 RFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENN---RALGILGGYVIDTS 87
R + S L L+++IG++F LL RA+TH+S + + L LG V+ +
Sbjct: 17 RARRSHKPRPPLGVLEERIGHSFADQNLLTRALTHTSKATGRGGSYQRLEFLGDRVLGLA 76
Query: 88 VSLRLLNKDIDISPKDLNRRVSETSNVEISCAVD-----GMHLGL-QKVVRVSPKTNSTV 141
V+ RL D DL+RR++ E AV G HL L Q V + N T+
Sbjct: 77 VADRLYAAFPDADEGDLSRRLAGLVRRETCAAVAASWEVGPHLILGQGEVMGGGRRNQTI 136
Query: 142 PAVVCGAFRAIFGAIAVDTG 161
A VC AI GAI +D G
Sbjct: 137 LADVC---EAILGAIYLDAG 153
>gi|319957798|ref|YP_004169061.1| RNAse iii [Nitratifractor salsuginis DSM 16511]
gi|319420202|gb|ADV47312.1| RNAse III [Nitratifractor salsuginis DSM 16511]
Length = 226
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 72/138 (52%), Gaps = 15/138 (10%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNK----DIDI 99
L++++GY FK+ L+ A+TH S+ + NN L LG V+D V L +K D +
Sbjct: 7 LERRLGYEFKNPQLIVEALTHKSYKKPYNNERLEFLGDAVLDLIVGEFLFHKFPQSDEGV 66
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVCGAFRAIFGA 155
K V+E+ ++ A+D L + + +SP + + P+++ AF A+ GA
Sbjct: 67 LSKIRASLVNESGFATLARAID-----LGRYIYLSPAEENNQGRSKPSLLSNAFEAVIGA 121
Query: 156 IAVDTGKCDDAGDVFLRV 173
I ++ G ++A + +R+
Sbjct: 122 IYLEAG-LENARSIVVRL 138
>gi|77416567|sp|Q7UGZ7.2|RNC_RHOBA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
Length = 266
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 36 SPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFSEE---NNRALGILGGYVIDTSVS 89
P+A A +E Q+ +GY F+ + LLR A+TH+S + +N L LG V+ +V
Sbjct: 25 EPYADAVAKIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVC 84
Query: 90 LRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQK---VVRVSPKTNSTVPAVVC 146
L N+ + S DL + S + SC LGL + V R + S ++V
Sbjct: 85 EWLFNEYPEYSEGDLTKIKSAVVSRR-SCGKVACKLGLDQCLIVGRGVTRNRSYPKSLVS 143
Query: 147 GAFRAIFGAIAVDTG 161
F A+ A+ +D G
Sbjct: 144 DVFEAVIAALYIDGG 158
>gi|294102050|ref|YP_003553908.1| ribonuclease III [Aminobacterium colombiense DSM 12261]
gi|293617030|gb|ADE57184.1| ribonuclease III [Aminobacterium colombiense DSM 12261]
Length = 240
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-----NNRALGILGGYVIDTSVSLRL 92
+ L + Q+++GY F +L+ A+TH+S++ E +N L LG V++ VS L
Sbjct: 12 WQRELASFQERLGYLFSKKEILQEALTHASYAHEKGLHFHNERLEFLGDAVLELIVSANL 71
Query: 93 LNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSP--KTNSTVPAVVCGAFR 150
N D+ L R S + + +V G +GL +++R+ + +++
Sbjct: 72 FNGYPDVDEGTLTRYRSNLV-CKNALSVWGKSIGLPQIIRLGKGLEQQGASASIIADTSE 130
Query: 151 AIFGAIAVDTG 161
A+ GA+ D G
Sbjct: 131 AVLGAVFSDGG 141
>gi|283953747|ref|ZP_06371278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414]
gi|283794788|gb|EFC33526.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414]
Length = 224
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLEQNLTYEFKDKNLLMHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + V+ + N +++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKSSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>gi|70726682|ref|YP_253596.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435]
gi|90101647|sp|Q4L5T5.1|RNC_STAHJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|68447406|dbj|BAE04990.1| ribonuclease III [Staphylococcus haemolyticus JCSC1435]
Length = 245
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 12/145 (8%)
Query: 28 NDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILG 80
N ++ + + F ++G+T+ +I L ++A +HSSF + +N L LG
Sbjct: 3 NPKKIEMVNDFQQQFAKKMNELGFTYSNIDLYQQAFSHSSFINDFNMDRLAHNERLEFLG 62
Query: 81 GYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKT 137
V++ +VS L +K D+ +L ++ T E S + + L +++ + KT
Sbjct: 63 DAVLELTVSRYLFDKHPDLPEGNLT-KMRATIVCEPSLVIFANKIELNQLILLGKGEEKT 121
Query: 138 NS-TVPAVVCGAFRAIFGAIAVDTG 161
T P++V AF A GA+ +D G
Sbjct: 122 GGRTRPSLVSDAFEAFVGALYLDQG 146
>gi|421614937|ref|ZP_16055976.1| ribonuclease III [Rhodopirellula baltica SH28]
gi|408494274|gb|EKJ98893.1| ribonuclease III [Rhodopirellula baltica SH28]
Length = 266
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 36 SPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFSEE---NNRALGILGGYVIDTSVS 89
P+A A +E Q+ +GY F+ + LLR A+TH+S + +N L LG V+ +V
Sbjct: 25 EPYADAVAKIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVC 84
Query: 90 LRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQK---VVRVSPKTNSTVPAVVC 146
L N+ + S DL + S + SC LGL + V R + S ++V
Sbjct: 85 EWLFNEYPEYSEGDLTKIKSAVVSRR-SCGKVACKLGLDQCLIVGRGVTRNRSYPKSLVS 143
Query: 147 GAFRAIFGAIAVDTG 161
F A+ A+ +D G
Sbjct: 144 DVFEAVIAALYIDGG 158
>gi|205373341|ref|ZP_03226145.1| ribonuclease III [Bacillus coahuilensis m4-4]
Length = 249
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 15/147 (10%)
Query: 28 NDQRFKT-SSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGIL 79
N + +K + + Q++IG +F ++ +L++A THSS+ E+N L L
Sbjct: 4 NREHYKNKNQQIEQVFKDFQEKIGISFSNVSILKQAFTHSSYVNEHRKKPFEDNERLEFL 63
Query: 80 GGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVS 134
G V++ +VS L NK +S +L + V E S V+ + +D G + L K ++
Sbjct: 64 GDAVLELTVSHFLYNKYATMSEGELTKLRAAIVCEPSLVKFANELDFGSVVLLGKGEELT 123
Query: 135 PKTNSTVPAVVCGAFRAIFGAIAVDTG 161
T PA++ F A GA+ +D G
Sbjct: 124 --GGRTRPALLADVFEAFIGALYLDQG 148
>gi|17545782|ref|NP_519184.1| ribonuclease III [Ralstonia solanacearum GMI1000]
gi|22654059|sp|Q8Y0I1.1|RNC_RALSO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|17428076|emb|CAD14765.1| probable ribonuclease III (rnase III) protein [Ralstonia
solanacearum GMI1000]
Length = 256
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+LE LQ+++GY F LL++A+TH S + +N L LG +++ +V+ L +
Sbjct: 2 SLEALQQRLGYRFSKPELLQQALTHRSHNAMHNERLEFLGDSILNCAVADMLYGMFGKLD 61
Query: 101 PKDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
DL+R V + + EI+ + D + LG ++ P+++ A AIF
Sbjct: 62 EGDLSRVRANLVKQQALYEIAQMLLLPDELRLGEGEL----KSGGFRRPSILADALEAIF 117
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 118 GAVFLDGG 125
>gi|312795542|ref|YP_004028464.1| ribonuclease III [Burkholderia rhizoxinica HKI 454]
gi|312167317|emb|CBW74320.1| Ribonuclease III (EC 3.1.26.3) [Burkholderia rhizoxinica HKI 454]
Length = 408
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+AMTH S S +N L LG V++ V+ L + +
Sbjct: 21 LSPLESRLHYEFRNAELLRQAMTHRSHSATHNERLEFLGDSVLNCVVAALLFQRFGKLDE 80
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ + + LG ++ P+++ F A+ G
Sbjct: 81 GDLSRVRANLVKQQSLYEIAQALNIAEALRLGEGELR----SGGFRRPSILADTFEAVLG 136
Query: 155 AIAVDTGKCDDAGDVFLRVH 174
AI +D G D A V R++
Sbjct: 137 AIFLDGG-FDAAQTVIKRLY 155
>gi|224825223|ref|ZP_03698329.1| Ribonuclease III [Pseudogulbenkiania ferrooxidans 2002]
gi|224602894|gb|EEG09071.1| Ribonuclease III [Pseudogulbenkiania ferrooxidans 2002]
Length = 238
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 49 IGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNR-- 106
+GY F LLR+A+TH SF NN +G +++ +V+ L ++ +S +L+R
Sbjct: 17 LGYRFTRPELLRQALTHRSFGSPNNERFEFIGDSILNYTVARMLFDRFPSLSEGELSRLR 76
Query: 107 --RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDT 160
V+++S EI+ + D ++LG ++ P+++ A A F A++ DT
Sbjct: 77 ANLVNQSSLAEIALGLGLGDYLYLGEGEL----KSGGFNRPSILADALEATFAAVSFDT 131
>gi|332529447|ref|ZP_08405406.1| ribonuclease III [Hylemonella gracilis ATCC 19624]
gi|332041093|gb|EGI77460.1| ribonuclease III [Hylemonella gracilis ATCC 19624]
Length = 223
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQ + F LL+RA+TH SF ++N L LG V++ +V+ L + + DL
Sbjct: 3 LQDHLQRPFTDAALLQRALTHRSFCADHNERLEFLGDSVLNLAVADLLYQRLHALPEGDL 62
Query: 105 NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGAIAVDT 160
+R + E + M LGL ++R+ + P+++ A A+ GA+ +D
Sbjct: 63 SRIRANLVKQETLHQL-AMELGLSDLLRLGEGELRSGGNKRPSILADALEALIGAVYLDA 121
Query: 161 G 161
G
Sbjct: 122 G 122
>gi|325265084|ref|ZP_08131811.1| ribonuclease III [Clostridium sp. D5]
gi|324029774|gb|EGB91062.1| ribonuclease III [Clostridium sp. D5]
Length = 232
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L+ L+K+IGY F+ LLRRAM HSSF+ E N L LG V++ S L
Sbjct: 8 LKELEKKIGYKFRDFSLLRRAMMHSSFTNEKHLEKYHCNERLEFLGDAVLELVSSEYLFL 67
Query: 95 KDIDISPKDLNR-RVSETSNVEIS-CAVD---GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
+ +S +L + R S ++ CA D G +L L + + ++ A
Sbjct: 68 ESPKVSEGELTKTRASMVCEPSLAFCARDIDLGSYLLLGRGEEATG--GRARDSITSDAL 125
Query: 150 RAIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 126 EALIGAIYLDGG 137
>gi|456012685|gb|EMF46373.1| Ribonuclease III [Planococcus halocryophilus Or1]
Length = 251
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLL 93
A E LQK++ TF LL +A THSS+ E +N L LG V++ SVS L
Sbjct: 22 AFEQLQKELNITFNKPTLLYQAFTHSSYVNEHRRKQFTDNERLEFLGDAVLELSVSHYLY 81
Query: 94 NKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVVCGAF 149
K ++S +L ++ E S + LG K + + T PA++ F
Sbjct: 82 MKYPEMSEGELT-KLRAAIVCEPSLVLFANELGFGKYILLGKGEELTGGRTRPALLADVF 140
Query: 150 RAIFGAIAVDTG 161
+ GA+ +D G
Sbjct: 141 ESYIGALYLDQG 152
>gi|269121067|ref|YP_003309244.1| ribonuclease III [Sebaldella termitidis ATCC 33386]
gi|268614945|gb|ACZ09313.1| ribonuclease III [Sebaldella termitidis ATCC 33386]
Length = 231
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 15/145 (10%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRL 92
+ L L ++IGY F I LL+ A+ H S++ E NN L LG V+D + +
Sbjct: 4 SKLRELMEKIGYEFDDIKLLKEALIHRSYANEHGEIENINNERLEFLGDAVLDLISTEYI 63
Query: 93 LNKDIDISPKDLNRRVSETSNVEISCAVD-----GMHLGLQKVVRVSPKTNSTVPAVVCG 147
K+ D + DL + S + I AV G +L L ++ + +++
Sbjct: 64 YTKEKDDNEGDLAKLKSRIISEPIFSAVSKEIALGEYLFLSNGEEITGGRDR--KSILGD 121
Query: 148 AFRAIFGAIAVDTGKCDDAGDVFLR 172
AF A+ GAI +D+G D+A + L+
Sbjct: 122 AFEALIGAIFMDSG-FDEAKRIALK 145
>gi|91775216|ref|YP_544972.1| ribonuclease III [Methylobacillus flagellatus KT]
gi|91775360|ref|YP_545116.1| ribonuclease III [Methylobacillus flagellatus KT]
gi|91709203|gb|ABE49131.1| RNAse III [Methylobacillus flagellatus KT]
gi|91709347|gb|ABE49275.1| RNAse III [Methylobacillus flagellatus KT]
Length = 248
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+L +Q+ Y FK GLL A+TH S+S NN L LG V++ V+ +L + + D
Sbjct: 27 SLVRQLAYEFKDKGLLTLALTHRSYSGSNNERLEFLGDGVLNFLVAHQLFLRFPKLPEGD 86
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V E + EI+ + + + LG ++ P+V+ A AI GA+
Sbjct: 87 LSRLRAQLVKEQTLSEIATELSVGEFLRLGEGEL----KSGGWRRPSVLADAMEAIIGAV 142
Query: 157 AVDTG 161
+D G
Sbjct: 143 FLDGG 147
>gi|32473407|ref|NP_866401.1| ribonuclease III [Rhodopirellula baltica SH 1]
gi|32398087|emb|CAD78182.1| ribonuclease III [Rhodopirellula baltica SH 1]
Length = 297
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 36 SPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFSEE---NNRALGILGGYVIDTSVS 89
P+A A +E Q+ +GY F+ + LLR A+TH+S + +N L LG V+ +V
Sbjct: 56 EPYADAVAKIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVC 115
Query: 90 LRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQK---VVRVSPKTNSTVPAVVC 146
L N+ + S DL + S + SC LGL + V R + S ++V
Sbjct: 116 EWLFNEYPEYSEGDLTKIKSAVVSRR-SCGKVACKLGLDQCLIVGRGVTRNRSYPKSLVS 174
Query: 147 GAFRAIFGAIAVDTG 161
F A+ A+ +D G
Sbjct: 175 DVFEAVIAALYIDGG 189
>gi|440718234|ref|ZP_20898695.1| ribonuclease III [Rhodopirellula baltica SWK14]
gi|436436569|gb|ELP30300.1| ribonuclease III [Rhodopirellula baltica SWK14]
Length = 297
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 36 SPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFSEE---NNRALGILGGYVIDTSVS 89
P+A A +E Q+ +GY F+ + LLR A+TH+S + +N L LG V+ +V
Sbjct: 56 EPYADAVAKIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVC 115
Query: 90 LRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQK---VVRVSPKTNSTVPAVVC 146
L N+ + S DL + S + SC LGL + V R + S ++V
Sbjct: 116 EWLFNEYPEYSEGDLTKIKSAVVSRR-SCGKVACKLGLDQCLIVGRGVTRNRSYPKSLVS 174
Query: 147 GAFRAIFGAIAVDTG 161
F A+ A+ +D G
Sbjct: 175 DVFEAVIAALYIDGG 189
>gi|417304879|ref|ZP_12091876.1| ribonuclease III [Rhodopirellula baltica WH47]
gi|327538797|gb|EGF25444.1| ribonuclease III [Rhodopirellula baltica WH47]
Length = 297
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 36 SPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFSEE---NNRALGILGGYVIDTSVS 89
P+A A +E Q+ +GY F+ + LLR A+TH+S + +N L LG V+ +V
Sbjct: 56 EPYADAVAKIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVC 115
Query: 90 LRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQK---VVRVSPKTNSTVPAVVC 146
L N+ + S DL + S + SC LGL + V R + S ++V
Sbjct: 116 EWLFNEYPEYSEGDLTKIKSAVVSRR-SCGKVACKLGLDQCLIVGRGVTRNRSYPKSLVS 174
Query: 147 GAFRAIFGAIAVDTG 161
F A+ A+ +D G
Sbjct: 175 DVFEAVIAALYIDGG 189
>gi|32490945|ref|NP_871199.1| hypothetical protein WGLp196 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|30173145|sp|Q8D305.1|RNC_WIGBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|25166151|dbj|BAC24342.1| rnc [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 226
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 11/123 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQK++GY F + +L++A+TH SFS +NN L LG +++ +S L N +I L
Sbjct: 9 LQKKMGYLFHNNIILKQALTHRSFSSKNNERLEFLGDSILNYIISDALYNNFTNIPEGKL 68
Query: 105 NRR----VSETSNVEIS---CAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
++ V + EI+ C D + LG+ +V +S ++ A AI G I
Sbjct: 69 SQMRSYLVRGNTLAEIAREFCLGDYLILGIGEVKTGGKNRDS----ILSNAMEAIIGGIF 124
Query: 158 VDT 160
+D+
Sbjct: 125 LDS 127
>gi|418323820|ref|ZP_12935082.1| ribonuclease III [Staphylococcus pettenkoferi VCU012]
gi|365229166|gb|EHM70329.1| ribonuclease III [Staphylococcus pettenkoferi VCU012]
Length = 243
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F T T K++ +++I L ++A +HSSF E+N L LG V++ +VS
Sbjct: 13 FRTQFATKMKELKLPYENIALYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K D+ +L + + T E S + + L +++ + KT T P++V
Sbjct: 73 YLFDKYPDLPEGNLTK-MRATIVCEPSLVIFANKINLNELILLGKGEEKTGGRTRPSLVS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFVGALYLDQG 146
>gi|302391792|ref|YP_003827612.1| RNAse III [Acetohalobium arabaticum DSM 5501]
gi|302203869|gb|ADL12547.1| RNAse III [Acetohalobium arabaticum DSM 5501]
Length = 234
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 35 SSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTS 87
++ + LE LQ +I F + LL+RA+TH S++ EN N L LG V+D
Sbjct: 3 TAEYKEKLEELQSKIDIYFADLDLLQRALTHKSYANENRDLNLKDNERLEFLGDSVLDIV 62
Query: 88 VSLRLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAV 144
VS + N+ D L + R S S ++ + LG ++ + ++
Sbjct: 63 VSEYMFNRYPDYPEGKLAKMRASVVSAPTLAAKARELDLGRYLLLGHGEEMTGGRKRSSI 122
Query: 145 VCGAFRAIFGAIAVDTGKCDDAGDVFLR-----VHSGEVGKAL 182
+ AF A+ G+I +D D A D ++ + S E G+ +
Sbjct: 123 LADAFEALVGSIYLDQD-LDIAEDFIMKLMKVDIESAEAGEHI 164
>gi|389749088|gb|EIM90265.1| hypothetical protein STEHIDRAFT_93138 [Stereum hirsutum FP-91666 SS1]
Length = 1500
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 29/145 (20%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSE--ENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
LQ+++GYTF++ LL AMTH SF+ ++ + L LG VID +V L NK +
Sbjct: 1166 LQERLGYTFRNPELLVEAMTHPSFATGGQSYQRLEFLGDAVIDLTVMSYLYNKFPSATSG 1225
Query: 103 DLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTV--------------------- 141
L+ + + + ++ HLGL K++ V+ +TN ++
Sbjct: 1226 KLSTARARAVSAPVLSSIAVKHLGLHKLMLVN-ETNLSIAMGKYLPTLEETSYEDMVLNA 1284
Query: 142 -----PAVVCGAFRAIFGAIAVDTG 161
P + ++ GA+ VD+G
Sbjct: 1285 WAHDPPKAISDVLESLLGAVFVDSG 1309
>gi|147678073|ref|YP_001212288.1| ribonuclease III [Pelotomaculum thermopropionicum SI]
gi|189043329|sp|A5D1H6.1|RNC_PELTS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|146274170|dbj|BAF59919.1| dsRNA-specific ribonuclease [Pelotomaculum thermopropionicum SI]
Length = 241
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSLRLLN 94
L L+ ++G ++ GLL RA+THSSF+ ENN+ L LG V++ +VS L
Sbjct: 8 LTLLKNRLGIAWRDEGLLTRALTHSSFTYENRQNGLENNQRLEFLGDAVLELAVSDYLYR 67
Query: 95 KDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRA 151
++ DL + R S ++ + LG + + + P+++ AF A
Sbjct: 68 SKPEMDEGDLTKLRASVVCEPSLARVARELELGTCLYMGKGEERSGGRDRPSILADAFEA 127
Query: 152 IFGAIAVDTGKCDDAG 167
+ GA+ +D G AG
Sbjct: 128 LLGAVYLDQGLEKAAG 143
>gi|198283249|ref|YP_002219570.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218665431|ref|YP_002425832.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198247770|gb|ACH83363.1| Ribonuclease III [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218517644|gb|ACK78230.1| ribonuclease III [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 226
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE+LQ+ +GY F+ LL +A+TH S +N L LG ++ V+ +L + +S
Sbjct: 4 LESLQQSVGYQFREQSLLLQALTHRSAGARHNERLEFLGDAALNFVVAAKLFARFPKVSE 63
Query: 102 KDLNRR----VSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V E + EI+ + D + LG ++ + +S + A A+ G
Sbjct: 64 GDLSRMRARLVREETLAEIAGKIALADSLILGPGEIRSGGARRDS----IRADALEAVIG 119
Query: 155 AIAVDTG 161
A +D G
Sbjct: 120 AAFLDGG 126
>gi|392529137|ref|ZP_10276274.1| ribonuclease III [Carnobacterium maltaromaticum ATCC 35586]
gi|414083593|ref|YP_006992301.1| ribonuclease III [Carnobacterium maltaromaticum LMA28]
gi|412997177|emb|CCO10986.1| ribonuclease III [Carnobacterium maltaromaticum LMA28]
Length = 231
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
L+ L+ + G TF+++ L A THSS+ E +N + LG V++ +VS L +
Sbjct: 6 LKELKDKFGITFRNLSYLEEAFTHSSYVNEHRDCHIQDNERIEFLGDAVLELTVSRYLFD 65
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRV---SPKTNS-TVPAVVCGAFR 150
D+ L R+ T E S + G +R+ + N PA++C F
Sbjct: 66 HYPDLPEGKLT-RLRATIVCEASLSQFAKEYGFDTYIRLGRGEERMNGRNRPALLCDLFE 124
Query: 151 AIFGAIAVDTG 161
+ GA+ +D G
Sbjct: 125 SFIGALYLDQG 135
>gi|329890079|ref|ZP_08268422.1| ribonuclease III [Brevundimonas diminuta ATCC 11568]
gi|328845380|gb|EGF94944.1| ribonuclease III [Brevundimonas diminuta ATCC 11568]
Length = 238
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSLR 91
A A+ L++++G+ F+ LL RA+THSS E +N L LG V+ V+ R
Sbjct: 10 AEAVAALRQRLGHDFEDASLLERALTHSSVGEGAGPQVPADNERLEFLGDRVLGLLVADR 69
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCG 147
L+ L+ R+ + + +CA G LG+ +R+SP T V+
Sbjct: 70 LVRDYPSADEGQLSARLHALVD-KSACARVGERLGVGDALRLSPGETKTGGRRKAGVIAD 128
Query: 148 AFRAIFGAIAVDTG 161
A AI A+ D G
Sbjct: 129 AVEAILAAVYRDGG 142
>gi|339483365|ref|YP_004695151.1| Ribonuclease 3 [Nitrosomonas sp. Is79A3]
gi|338805510|gb|AEJ01752.1| Ribonuclease 3 [Nitrosomonas sp. Is79A3]
Length = 238
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 36 SPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNK 95
S + L+T +IGY+F LL+ A+TH S S +N L LG V++ +++ +
Sbjct: 8 SNYQFLLDTFCNRIGYSFTERKLLQEALTHRSHSAFHNERLEFLGDAVLNCAIAGLIYKY 67
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGMHLGLQ--KVVRVSPKT----NSTVPAVVCGAF 149
D+ L+R + N + A+ M L LQ K++R+ P+++ A
Sbjct: 68 FPDLPEGHLSRLRANFVNQQ---ALSDMALSLQMDKLIRLGEGELKSGGCQRPSILADAL 124
Query: 150 RAIFGAIAVDT 160
A+ GAI +D+
Sbjct: 125 EAVLGAIYLDS 135
>gi|197294673|ref|YP_001799214.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma australiense]
gi|171854000|emb|CAM11965.1| DsRNA-specific ribonuclease [Candidatus Phytoplasma australiense]
Length = 222
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFS------EENNRALGILGGYVIDTSVSLRLLNKD 96
E K++ K+I L R+A+THSS+S +ENN L LG +I ++ L K+
Sbjct: 4 EHFLKKLNIVPKNIALYRKALTHSSYSNEKEFLQENNERLEFLGDAIIGLLMADYLYQKN 63
Query: 97 IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNSTVPAVVCGAFRAIF 153
+ +R E S + + LQ + + + +++ AF A+F
Sbjct: 64 KENEGVMTKKRAQAV--CEKSLTIYAKSINLQNYLFLGKGEKNKDFNTKSIIADAFEALF 121
Query: 154 GAIAVDTGKCDDAGDVFLRV 173
GAI +D G + A VF R+
Sbjct: 122 GAIYLDLG-YNSAKKVFQRL 140
>gi|57506125|ref|ZP_00372047.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195]
gi|57015609|gb|EAL52401.1| ribonuclease III (rnc) [Campylobacter upsaliensis RM3195]
Length = 224
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE L+ ++ Y FK LL A+TH S + NN L LG V+D V L +K + +
Sbjct: 4 LELLEAKLNYKFKEQKLLIYALTHKSAKKNYNNERLEFLGDAVLDLVVGEFLFHKFKNEA 63
Query: 101 PKDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFG 154
DL++ V+E S +I+ +++ LG + ++ + N T P+++ F A+ G
Sbjct: 64 EGDLSKLRAALVNEKSFAKIATSLN---LGDFIFMSIAEQNNGGKTKPSILSDTFEALIG 120
Query: 155 AIAVDTG 161
A+ ++ G
Sbjct: 121 ALHLEAG 127
>gi|344199888|ref|YP_004784214.1| ribonuclease 3 [Acidithiobacillus ferrivorans SS3]
gi|343775332|gb|AEM47888.1| Ribonuclease 3 [Acidithiobacillus ferrivorans SS3]
Length = 226
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK +GY F+ LL +A+TH S ++N L LG ++ V+ +L + +S
Sbjct: 4 LEGLQKSVGYHFREQSLLSQALTHRSAGAQHNERLEFLGDAALNFVVAAKLYARFPKVSE 63
Query: 102 KDLNRR----VSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V E + EI+ + D + LG ++ + +S + A A+ G
Sbjct: 64 GDLSRMRARLVREETLAEIAGKIALADFLILGSGEIRSGGARRDS----IRADALEAVIG 119
Query: 155 AIAVDTG 161
A +D G
Sbjct: 120 AAFLDGG 126
>gi|229086402|ref|ZP_04218578.1| Ribonuclease 3 [Bacillus cereus Rock3-44]
gi|228696918|gb|EEL49727.1| Ribonuclease 3 [Bacillus cereus Rock3-44]
Length = 245
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 22/152 (14%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALG 77
R +++F+T + A +T Q++IG TF LL +A THSS+ E+N L
Sbjct: 4 RKYREKKFETK--YREAFKTFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLE 61
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRV 133
LG V++ +VS L K +S +L + V E S V + L +V +
Sbjct: 62 FLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFAN-----ELSFGNLVLL 116
Query: 134 SPKTNST----VPAVVCGAFRAIFGAIAVDTG 161
T PA++ F A GA+ +D G
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQG 148
>gi|33519987|ref|NP_878819.1| ribonuclease III [Candidatus Blochmannia floridanus]
gi|81666891|sp|Q7VRR0.1|RNC_BLOFL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|33504333|emb|CAD83226.1| ribonuclease III [Candidatus Blochmannia floridanus]
Length = 232
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQK++GY F ++ LL RA+TH SFS ++N L LG +++ S++ L ++ + D+
Sbjct: 12 LQKKLGYFFHTVDLLLRALTHRSFSNKHNERLEFLGDSILNYSITNILYHRYNHMDEGDM 71
Query: 105 NR 106
+R
Sbjct: 72 SR 73
>gi|389815314|ref|ZP_10206660.1| ribonuclease 3 [Planococcus antarcticus DSM 14505]
gi|388466093|gb|EIM08402.1| ribonuclease 3 [Planococcus antarcticus DSM 14505]
Length = 251
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLL 93
A E LQK++ +F LL +A THSS+ E +N L LG V++ SVS L
Sbjct: 22 AFEQLQKELNVSFNKPALLYQAFTHSSYVNEHRRKQFTDNERLEFLGDAVLELSVSHYLY 81
Query: 94 NKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVVCGAF 149
K ++S +L ++ E S + LG K + + T PA++ F
Sbjct: 82 MKYPEMSEGELT-KLRAAIVCEPSLVLFANELGFGKYILLGKGEELTGGRTRPALLADVF 140
Query: 150 RAIFGAIAVDTG 161
+ GA+ +D G
Sbjct: 141 ESYIGALYLDQG 152
>gi|336421735|ref|ZP_08601891.1| ribonuclease III [Lachnospiraceae bacterium 5_1_57FAA]
gi|336000206|gb|EGN30359.1| ribonuclease III [Lachnospiraceae bacterium 5_1_57FAA]
Length = 231
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L+ L+K+IGYTFK + LL++AM HSS++ E N L LG V++ VS L
Sbjct: 5 LKELEKKIGYTFKDLQLLKKAMLHSSYANEKHLPKYECNERLEFLGDAVLEL-VSSEFLF 63
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
+ + P+ + + E + A L L + + + +T ++ A
Sbjct: 64 YEHEKMPEGELTKTRASMVCEPALAFCARELSLGEYLLLGKGEEATGGRKRESITSDAME 123
Query: 151 AIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 124 ALIGAIYIDGG 134
>gi|402299450|ref|ZP_10819056.1| ribonuclease III [Bacillus alcalophilus ATCC 27647]
gi|401725368|gb|EJS98656.1| ribonuclease III [Bacillus alcalophilus ATCC 27647]
Length = 263
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 22 FQVRAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNR 74
+ R + +R +S ++LQ IG+TF++ LL +A THSS+ E +N
Sbjct: 15 YHERRRSPRRLTLTSEQRQKFDSLQADIGFTFENKKLLIQAFTHSSYVNEHRIYTFQDNE 74
Query: 75 ALGILGGYVIDTSVSLRLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRV 133
L LG V++ +VS L K +S D+ + R S ++ + + G ++V +
Sbjct: 75 RLEFLGDAVLELAVSQFLFKKFKAMSEGDMTKLRASIVCEPSLAKFAEELQFG--QLVLL 132
Query: 134 SPKTNST----VPAVVCGAFRAIFGAIAVDTG 161
T PA++ F A GA+ +D G
Sbjct: 133 GKGEEITGGRLRPALLADVFEAFIGALYLDQG 164
>gi|326791395|ref|YP_004309216.1| ribonuclease III [Clostridium lentocellum DSM 5427]
gi|326542159|gb|ADZ84018.1| ribonuclease III [Clostridium lentocellum DSM 5427]
Length = 240
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 16/137 (11%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
L+ +Q+++ YTF + LL A+THSS++ E +N L LG ++D +S L
Sbjct: 14 LDEMQRKLSYTFTNSNLLEEALTHSSYANEHRNERVKDNERLEFLGDAILDLIISEYLFK 73
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
K ++ DL+ ++ + E S A +GL + + + T +++ F
Sbjct: 74 KHPEMPEGDLS-KIRASIVCEASLAKMARFIGLGEYILLGKGEEMTGGRERASILADGFE 132
Query: 151 AIFGAIAVDTG----KC 163
A+ GA+ +D G KC
Sbjct: 133 ALTGALFLDGGFNEAKC 149
>gi|194290152|ref|YP_002006059.1| ribonuclease iii [Cupriavidus taiwanensis LMG 19424]
gi|238692743|sp|B3R1Z9.1|RNC_CUPTR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|193223987|emb|CAQ69996.1| Ribonuclease III [Cupriavidus taiwanensis LMG 19424]
Length = 256
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ+++GY F LL++A+TH S S ++N L LG V++ +V+ L +
Sbjct: 3 LDALQQRLGYRFSKPELLQQALTHRSHSAQHNERLEFLGDSVLNCAVADMLYGMFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + + EI+ + D + LG ++ P+++ A AI G
Sbjct: 63 GDLSRVRANLVKQQALYEIAQMLQLSDTLRLGEGEL----KSGGFRRPSILADALEAIVG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDAG 125
>gi|113868517|ref|YP_727006.1| ribonuclease III [Ralstonia eutropha H16]
gi|339326546|ref|YP_004686239.1| ribonuclease Rnc [Cupriavidus necator N-1]
gi|123133802|sp|Q0K8N3.1|RNC_RALEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|113527293|emb|CAJ93638.1| dsRNA-specific ribonuclease [Ralstonia eutropha H16]
gi|338166703|gb|AEI77758.1| ribonuclease Rnc [Cupriavidus necator N-1]
Length = 256
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ+++GY F LL++A+TH S S ++N L LG V++ +V+ L +
Sbjct: 3 LDALQQRLGYRFSKPELLQQALTHRSHSAQHNERLEFLGDSVLNCAVADMLYGMFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + + EI+ + D + LG ++ P+++ A AI G
Sbjct: 63 GDLSRVRANLVKQQALYEIAQMLQLSDTLRLGEGEL----KSGGFRRPSILADALEAIVG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDAG 125
>gi|332029751|gb|EGI69620.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior]
Length = 1257
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 46/163 (28%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFS----EENNRALGILGGYVIDTSVSLRLLNKDID 98
+TL+ +IGY FK+ L +A TH S++ E + L LG ++D ++ + D++
Sbjct: 1002 DTLESKIGYKFKNRAFLLQAFTHPSYTANGITECYQRLEFLGDAILDFLITCYIYENDVN 1061
Query: 99 ISPKDL-NRRVSETSNVEISC--AVDGMHLGLQKVVRVSPKTNST--------------- 140
+SP DL + R + +N+ +C G+H L + +PK +
Sbjct: 1062 LSPGDLTDLRSALVNNITFACLSVRHGLHTAL---LAYAPKLHEIIDCFVRFQEERDYVV 1118
Query: 141 ---------------------VPAVVCGAFRAIFGAIAVDTGK 162
VP V+ F ++ GAI +D+GK
Sbjct: 1119 NDELLYVLIEEDECNITEYVDVPKVLGDLFESLIGAIYLDSGK 1161
>gi|167758292|ref|ZP_02430419.1| hypothetical protein CLOSCI_00630 [Clostridium scindens ATCC 35704]
gi|167664189|gb|EDS08319.1| ribonuclease III [Clostridium scindens ATCC 35704]
Length = 235
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L+ L+K+IGYTFK + LL++AM HSS++ E N L LG V++ VS L
Sbjct: 9 LKELEKKIGYTFKDLQLLKKAMLHSSYANEKHLPKYECNERLEFLGDAVLEL-VSSEFLF 67
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
+ + P+ + + E + A L L + + + +T ++ A
Sbjct: 68 YEHEKMPEGELTKTRASMVCEPALAFCARELSLGEYLLLGKGEEATGGRKRESITSDAME 127
Query: 151 AIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 128 ALIGAIYIDGG 138
>gi|138894713|ref|YP_001125166.1| ribonuclease III [Geobacillus thermodenitrificans NG80-2]
gi|196247668|ref|ZP_03146370.1| Ribonuclease III [Geobacillus sp. G11MC16]
gi|189043318|sp|A4IM67.1|RNC_GEOTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|134266226|gb|ABO66421.1| Ribonuclease III [Geobacillus thermodenitrificans NG80-2]
gi|196212452|gb|EDY07209.1| Ribonuclease III [Geobacillus sp. G11MC16]
Length = 246
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 19/143 (13%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-------EENNRALGILGGYVIDTSVSLRLLN 94
+ LQK+IG TF++ LL +A THSS+ E+N L LG V++ +VS L
Sbjct: 18 FQELQKKIGITFQNEKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLFQ 77
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
K +S L + V E S V+ + A+ G + L K ++ T PA++ F
Sbjct: 78 KFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELT--GGRTRPALLADVF 135
Query: 150 RAIFGAIAVDTGKCDDAGDVFLR 172
A GA+ +D G DV LR
Sbjct: 136 EAFIGALYLDQGM-----DVVLR 153
>gi|357014341|ref|ZP_09079340.1| Rnc [Paenibacillus elgii B69]
Length = 234
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
L+ LQ +G +F+ LLR+A THSS+ E +N L LG V++ +VS L +
Sbjct: 5 LKQLQVDLGISFRRPDLLRQAFTHSSYVNEHRIGQCKDNERLEFLGDAVLELTVSEYLFD 64
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
K D + +L + V E S V + +D G ++ L K ++ T PA++ F
Sbjct: 65 KYPDRTEGELTKLRASIVCEPSLVGFAEQLDFGSYVLLGKGEELT--GGRTRPALLADVF 122
Query: 150 RAIFGAIAVDTG 161
+ GA+ +D G
Sbjct: 123 ESFIGALYLDQG 134
>gi|225570731|ref|ZP_03779754.1| hypothetical protein CLOHYLEM_06832 [Clostridium hylemonae DSM
15053]
gi|225160474|gb|EEG73093.1| hypothetical protein CLOHYLEM_06832 [Clostridium hylemonae DSM
15053]
Length = 231
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L+ L+K+IGYTFK GLL++AM HSS++ E N L LG V++ S L
Sbjct: 5 LKQLEKRIGYTFKEFGLLKKAMMHSSYANEQHLHKYECNERLEFLGDAVLELVSSEFLFY 64
Query: 95 KDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAF 149
+ + +L + R S ++ + +G + + ++T ++ A
Sbjct: 65 EHAKMPEGELTKTRASMVCEPALAFCARELQIG--DFLLLGKGEDATGGRKRESITSDAM 122
Query: 150 RAIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 123 EALIGAIYIDGG 134
>gi|386749829|ref|YP_006223036.1| ribonuclease III [Helicobacter cetorum MIT 00-7128]
gi|384556072|gb|AFI04406.1| ribonuclease III [Helicobacter cetorum MIT 00-7128]
Length = 234
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDISP 101
+ L+K +GY FK LL +A+TH S+ + NN L LG V+D + L +K +
Sbjct: 14 QKLEKDLGYFFKDKRLLEQALTHKSYRQALNNERLEFLGDAVLDLIIGELLYHKFYQYNE 73
Query: 102 KDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L++ VSE ++ + LQ +RVS S+ P+++ AF A+
Sbjct: 74 GKLSKLRASIVSEQGFTTLAKVI-----SLQDYLRVSFSEESSKGREKPSILSSAFEALM 128
Query: 154 GAIAVDTG 161
+ ++ G
Sbjct: 129 AGVYLEAG 136
>gi|163856074|ref|YP_001630372.1| ribonuclease III [Bordetella petrii DSM 12804]
gi|229564350|sp|A9IIJ2.1|RNC_BORPD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|163259802|emb|CAP42103.1| Ribonuclease III [Bordetella petrii]
Length = 252
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L TL+ ++ + F + LL +A+TH S S +N L LG V++ V+ L + +
Sbjct: 2 SLATLETRLDHRFGNAALLEQALTHRSHSARHNERLEFLGDSVLNFVVAAMLFERFPKLD 61
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
DL+R + + S A G L L + +R+ + P+++ A AIFGA
Sbjct: 62 EGDLSRLRANLVK-QASLADIGQRLELSQYLRLGEGELKSGGFRRPSILADAVEAIFGAA 120
Query: 157 AVDTGKCDDAGDVFLRVHS 175
+D G D A V +R +
Sbjct: 121 FLDGG-FDTARKVIVRQYQ 138
>gi|421748648|ref|ZP_16186217.1| ribonuclease III [Cupriavidus necator HPC(L)]
gi|409772607|gb|EKN54579.1| ribonuclease III [Cupriavidus necator HPC(L)]
Length = 256
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ+++GY F LL++A+TH S S ++N L LG V++ +V+ L +
Sbjct: 3 LDALQQRLGYRFSKPELLQQALTHRSHSAQHNERLEFLGDSVLNCAVADMLYGMFGKLDE 62
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
DL+R + + + M L L + +R+ + P+++ A AI GA+
Sbjct: 63 GDLSRVRANLVKQQALYEIAQM-LQLSESLRLGEGELKSGGFRRPSILADALEAIVGAVF 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDAG 125
>gi|169824545|ref|YP_001692156.1| ribonuclease III [Finegoldia magna ATCC 29328]
gi|302380368|ref|ZP_07268838.1| ribonuclease III [Finegoldia magna ACS-171-V-Col3]
gi|303233642|ref|ZP_07320296.1| ribonuclease III [Finegoldia magna BVS033A4]
gi|417926170|ref|ZP_12569578.1| ribonuclease III [Finegoldia magna SY403409CC001050417]
gi|167831350|dbj|BAG08266.1| ribonuclease III [Finegoldia magna ATCC 29328]
gi|302311858|gb|EFK93869.1| ribonuclease III [Finegoldia magna ACS-171-V-Col3]
gi|302495076|gb|EFL54828.1| ribonuclease III [Finegoldia magna BVS033A4]
gi|341589983|gb|EGS33236.1| ribonuclease III [Finegoldia magna SY403409CC001050417]
Length = 238
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L L++++ Y F I LL A HSS+ EN N L LG V+D VS L N
Sbjct: 9 LHELEEKLDYRFTDINLLNLAFFHSSYGNENKAYKNISNERLEFLGDSVLDLVVSDFLYN 68
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFR 150
+ + + S+ E S + +L L K + + S P+V+ F
Sbjct: 69 SKSSLKEGAMTKIRSQMV-CEKSFSNMAKYLELGKYLMMGHGEFISGGSEKPSVLADTFE 127
Query: 151 AIFGAIAVDTG 161
A+FGAI +D+G
Sbjct: 128 AVFGAIYLDSG 138
>gi|34558193|ref|NP_908008.1| ribonuclease III [Wolinella succinogenes DSM 1740]
gi|81653364|sp|Q7M840.1|RNC_WOLSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|34483912|emb|CAE10908.1| RIBONUCLEASE III [Wolinella succinogenes]
Length = 238
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDI 99
++E +K++GY F++ LL A+TH S+ + NN L LG V+D + L K
Sbjct: 3 SIEEFEKRLGYRFQNKNLLIEALTHKSYKKPYNNERLEFLGDAVLDLVIGEFLFLKFPKA 62
Query: 100 SPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAI 156
+L++ R S + + + + LG + + + N P+++ AF A GAI
Sbjct: 63 DEGELSKMRASLVNEKGFAKLAERVSLGRHIFISNAEENNKGREKPSLLSNAFEATMGAI 122
Query: 157 AVDTG 161
++TG
Sbjct: 123 YLETG 127
>gi|297530632|ref|YP_003671907.1| ribonuclease III [Geobacillus sp. C56-T3]
gi|297253884|gb|ADI27330.1| ribonuclease III [Geobacillus sp. C56-T3]
Length = 246
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-------EENNRALGILGGYVIDTSVSLRLLN 94
+ LQK+IG TF++ LL +A THSS+ E+N L LG V++ +VS L
Sbjct: 18 FQELQKKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQ 77
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
K +S L + V E S V+ + A+ G + L K ++ T PA++ F
Sbjct: 78 KFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELT--GGRTRPALLADVF 135
Query: 150 RAIFGAIAVDTG 161
A GA+ +D G
Sbjct: 136 EAFIGALYLDQG 147
>gi|238923872|ref|YP_002937388.1| ribonuclease III [Eubacterium rectale ATCC 33656]
gi|238875547|gb|ACR75254.1| ribonuclease III [Eubacterium rectale ATCC 33656]
Length = 237
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 12/142 (8%)
Query: 31 RFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYV 83
R++ L Q +IGYTFK+ LL +A+THSS++ E +N L LG V
Sbjct: 3 RYRNRGKIMADLNEFQSKIGYTFKNRHLLEQALTHSSYANEKHMKKHSDNERLEFLGDAV 62
Query: 84 IDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST--- 140
++ VS L + P+ ++ + E + A+ L L K +R+ + T
Sbjct: 63 LEI-VSSEFLFINYPQKPEGELTKLRASIVCEPTLALCTKPLDLGKYLRLGRGEDHTGGR 121
Query: 141 -VPAVVCGAFRAIFGAIAVDTG 161
+++ A A+ GAI +D G
Sbjct: 122 KRKSILSDALEAVIGAIYLDGG 143
>gi|261419391|ref|YP_003253073.1| ribonuclease III [Geobacillus sp. Y412MC61]
gi|319766206|ref|YP_004131707.1| ribonuclease III [Geobacillus sp. Y412MC52]
gi|448237348|ref|YP_007401406.1| ribonuclease 3 [Geobacillus sp. GHH01]
gi|261375848|gb|ACX78591.1| ribonuclease III [Geobacillus sp. Y412MC61]
gi|317111072|gb|ADU93564.1| ribonuclease III [Geobacillus sp. Y412MC52]
gi|445206190|gb|AGE21655.1| ribonuclease 3 [Geobacillus sp. GHH01]
Length = 246
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-------EENNRALGILGGYVIDTSVSLRLLN 94
+ LQK+IG TF++ LL +A THSS+ E+N L LG V++ +VS L
Sbjct: 18 FQELQKKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQ 77
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
K +S L + V E S V+ + A+ G + L K ++ T PA++ F
Sbjct: 78 KFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELT--GGRTRPALLADVF 135
Query: 150 RAIFGAIAVDTG 161
A GA+ +D G
Sbjct: 136 EAFIGALYLDQG 147
>gi|270308287|ref|YP_003330345.1| ribonuclease III [Dehalococcoides sp. VS]
gi|270154179|gb|ACZ62017.1| ribonuclease III [Dehalococcoides sp. VS]
Length = 248
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 15/151 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L L++ +G F++ LL +A+ H+S+ EN N + LG V+ + RL +
Sbjct: 15 LTELEESLGVKFENPSLLEQALIHTSWVNENPTHLNGSNERMEFLGDAVLGVIFADRLYH 74
Query: 95 KDIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
DI DL R V S V ++ ++ G +L L + VS PA + GAF
Sbjct: 75 DFPDIQEGDLTRFRSLLVRRESLVRVALGINLGNYLYLGRGEDVS--KGRFKPANLAGAF 132
Query: 150 RAIFGAIAVDTGKCDDAGDVFLRVHSGEVGK 180
A+ AI +D G D +V R+ E+ +
Sbjct: 133 EAVLAAIYIDKG-IDITREVIFRLFRTEMER 162
>gi|452205270|ref|YP_007485399.1| ribonuclease III [Dehalococcoides mccartyi BTF08]
gi|452112326|gb|AGG08057.1| ribonuclease III [Dehalococcoides mccartyi BTF08]
Length = 248
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L L+ +G F+ LL +A+ H+S+ EN N + LG V+ + RL +
Sbjct: 15 LTELENSLGVKFEQPSLLEQALIHTSWVNENPNHPSGSNERMEFLGDAVLGVIFADRLYH 74
Query: 95 KDIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
DI DL R V S V ++ ++ G +L L + VS PA + GAF
Sbjct: 75 DFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDVS--KGRFKPANLAGAF 132
Query: 150 RAIFGAIAVDTGKCDDAGDVFLRVHSGEVGK 180
A+ AI +D G D +V R+ E+ +
Sbjct: 133 EAVLAAIYIDKG-MDVTREVIFRLFKTEMER 162
>gi|268608881|ref|ZP_06142608.1| ribonuclease III [Ruminococcus flavefaciens FD-1]
Length = 229
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA------LGILGGYVIDTSVSLRLLNKD 96
E + IGYTFK+ L+ +A++HSS++ E RA L LG V+ VS L K+
Sbjct: 5 EEFENIIGYTFKNKELIEQALSHSSYANEKKRAGGSNERLEFLGDSVLSIVVS-DYLYKN 63
Query: 97 IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
I++ +L ++ + E S V + L + + + +T P+++ AF A+
Sbjct: 64 INVPEGELT-KMRASLVCEKSLFVFAQQIELGEFLHLGKGEENTGGRERPSILADAFEAV 122
Query: 153 FGAIAVDTG 161
AI +D G
Sbjct: 123 IAAIYLDGG 131
>gi|186475606|ref|YP_001857076.1| ribonuclease III [Burkholderia phymatum STM815]
gi|184192065|gb|ACC70030.1| Ribonuclease III [Burkholderia phymatum STM815]
Length = 441
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 11 LSPLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 70
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ +G+ LG ++ P+++ AI G
Sbjct: 71 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELR----SGGFRRPSILADTLEAILG 126
Query: 155 AIAVDTG 161
AI +D G
Sbjct: 127 AIFLDGG 133
>gi|295109853|emb|CBL23806.1| RNAse III [Ruminococcus obeum A2-162]
Length = 223
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
+E L++ IGYTF++ LL++A+THSS++ E N L LG V++ S L
Sbjct: 1 MEQLEQIIGYTFQNKKLLKQALTHSSYANEKKLGKLGCNERLEFLGDAVLELISSDFLYR 60
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
K I +L ++ + E S A GL + + + N T ++V A
Sbjct: 61 KFSQIPEGELTKKRASLV-CEPSLAYCAREFGLPEFLLLGKGENMTGGRNRDSIVSDATE 119
Query: 151 AIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 120 ALLGAIYLDGG 130
>gi|332653520|ref|ZP_08419265.1| ribonuclease III [Ruminococcaceae bacterium D16]
gi|332518666|gb|EGJ48269.1| ribonuclease III [Ruminococcaceae bacterium D16]
Length = 226
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNK 95
+ TL++++GY F++ LL A+THSS + E +N L LG ++ V+ L
Sbjct: 1 MTTLEEKLGYQFQNRELLENALTHSSCANESRGKLQSNERLEFLGDSILGMVVADHLYRG 60
Query: 96 DIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFR 150
D+ +L R V E S VE++ A+D G +L L K T P++ A
Sbjct: 61 HPDLPEGELTRVRAALVCEESLVEVAQALDLGSYLLLGKGEEAG--GGRTRPSIQADAVE 118
Query: 151 AIFGAIAVDTG 161
A+ A+ +D G
Sbjct: 119 AVLAAVYLDGG 129
>gi|297539125|ref|YP_003674894.1| ribonuclease III [Methylotenera versatilis 301]
gi|297258472|gb|ADI30317.1| ribonuclease III [Methylotenera versatilis 301]
Length = 231
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 11/126 (8%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
+ L K++ Y F LL +A+TH S++ +NN L LG ++ ++ +L + ++
Sbjct: 4 QDLSKRLSYKFVDKNLLTQALTHRSYASQNNERLEYLGDGALNFIIANQLYQRFPSLAEG 63
Query: 103 DLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGA 155
DL+R V E + EI+ ++ D + LG ++ + P+++ A AI GA
Sbjct: 64 DLSRLRAQLVKEATISEIAFSLDIGDALKLGEGELKSAGWRR----PSILADALEAIIGA 119
Query: 156 IAVDTG 161
+ +D G
Sbjct: 120 VYLDGG 125
>gi|297588527|ref|ZP_06947170.1| ribonuclease III [Finegoldia magna ATCC 53516]
gi|297573900|gb|EFH92621.1| ribonuclease III [Finegoldia magna ATCC 53516]
Length = 238
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 12/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L L++++ Y F I LL A HSS+ EN N L LG V+D VS L N
Sbjct: 9 LHELEEKLDYRFTDINLLNLAFFHSSYGNENKSYKDISNERLEFLGDSVLDLIVSDFLYN 68
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFR 150
+ + + S+ E S + +L L K + + S P+V+ F
Sbjct: 69 SKSSLKEGAMTKIRSQMV-CEKSFSNMAKYLELGKYLMMGHGEFISGGSEKPSVLADTFE 127
Query: 151 AIFGAIAVDTG 161
A+FGAI +D+G
Sbjct: 128 AVFGAIYLDSG 138
>gi|350545380|ref|ZP_08914868.1| Ribonuclease III [Candidatus Burkholderia kirkii UZHbot1]
gi|350526843|emb|CCD39434.1| Ribonuclease III [Candidatus Burkholderia kirkii UZHbot1]
Length = 372
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
++ ++ Y F++ LLR+AMTH S S +N L LG V++ V+ L + + DL
Sbjct: 1 MESRLRYEFRNAELLRQAMTHRSHSATHNERLEFLGDSVLNCVVAALLFQRFGKLDEGDL 60
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ + +G+ LG ++ P+++ AIFGAI
Sbjct: 61 SRVRANLVKQQSLYEIAQTLNVSEGLRLGEGELR----SGGFRRPSILADTLEAIFGAIF 116
Query: 158 VDTG 161
+D G
Sbjct: 117 LDGG 120
>gi|126698844|ref|YP_001087741.1| ribonuclease III [Clostridium difficile 630]
gi|254974792|ref|ZP_05271264.1| ribonuclease III [Clostridium difficile QCD-66c26]
gi|255092180|ref|ZP_05321658.1| ribonuclease III [Clostridium difficile CIP 107932]
gi|255100264|ref|ZP_05329241.1| ribonuclease III [Clostridium difficile QCD-63q42]
gi|255306204|ref|ZP_05350376.1| ribonuclease III [Clostridium difficile ATCC 43255]
gi|255313919|ref|ZP_05355502.1| ribonuclease III [Clostridium difficile QCD-76w55]
gi|255516598|ref|ZP_05384274.1| ribonuclease III [Clostridium difficile QCD-97b34]
gi|255649698|ref|ZP_05396600.1| ribonuclease III [Clostridium difficile QCD-37x79]
gi|260682854|ref|YP_003214139.1| ribonuclease III [Clostridium difficile CD196]
gi|260686452|ref|YP_003217585.1| ribonuclease III [Clostridium difficile R20291]
gi|306519814|ref|ZP_07406161.1| ribonuclease III [Clostridium difficile QCD-32g58]
gi|384360443|ref|YP_006198295.1| ribonuclease III [Clostridium difficile BI1]
gi|423082364|ref|ZP_17070956.1| ribonuclease III [Clostridium difficile 002-P50-2011]
gi|423087756|ref|ZP_17076142.1| ribonuclease III [Clostridium difficile 050-P50-2011]
gi|423090834|ref|ZP_17079120.1| ribonuclease III [Clostridium difficile 70-100-2010]
gi|115250281|emb|CAJ68103.1| ribonuclease III [Clostridium difficile 630]
gi|260209017|emb|CBA62108.1| putative ribonuclease III [Clostridium difficile CD196]
gi|260212468|emb|CBE03371.1| putative ribonuclease III [Clostridium difficile R20291]
gi|357544070|gb|EHJ26076.1| ribonuclease III [Clostridium difficile 050-P50-2011]
gi|357548690|gb|EHJ30550.1| ribonuclease III [Clostridium difficile 002-P50-2011]
gi|357555949|gb|EHJ37571.1| ribonuclease III [Clostridium difficile 70-100-2010]
Length = 236
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 12/139 (8%)
Query: 33 KTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTS 87
K S ++ + I Y FK+ + A+THSS+S EN N L LG V+
Sbjct: 2 KISKKLLDNIQRFENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIV 61
Query: 88 VSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVP 142
+S L N++ ++ +L + V E S E++ ++ G+H+ L + + + T
Sbjct: 62 ISDYLFNEEANLPEGELTKLRANIVCEDSLSEVANDINLGIHMLLGRGEEATGGRHRT-- 119
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ AI +D G
Sbjct: 120 SILADAFEAVIAAIYLDGG 138
>gi|406706293|ref|YP_006756646.1| ribonuclease III [alpha proteobacterium HIMB5]
gi|406652069|gb|AFS47469.1| ribonuclease III [alpha proteobacterium HIMB5]
Length = 221
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSF-SEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
L+K+I FK L +++TH SF S+ENN L LG V+ +S +LL D+ PK+
Sbjct: 8 LEKKINIEFKDKNKLVKSLTHKSFNSKENNEKLEFLGDRVLGLVISKKLL----DLYPKE 63
Query: 104 ----LNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVP---AVVCGAFRAIFGAI 156
L+++ + N +C + L K + + P V+ + A+ GAI
Sbjct: 64 KEGVLDKKFASLVNKN-TCLQIAKKINLDKFILTLNSEKAKTPPQDKVISDSCEALIGAI 122
Query: 157 AVDTG 161
+D G
Sbjct: 123 YLDRG 127
>gi|410462395|ref|ZP_11315978.1| ribonuclease III [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409984486|gb|EKO40792.1| ribonuclease III [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 243
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 49 IGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
+G+ F S LL A+THSS++ E +N L LG V++ SVS L + +
Sbjct: 22 LGHEFASPALLATALTHSSYANERGEGTGHNERLEFLGDAVLELSVSEELFSLFPEAPEG 81
Query: 103 DLNRRVSETSNVEISCAVDGMHLGLQKVVRV----SPKTNSTVPAVVCGAFRAIFGAIAV 158
+L S+ N E S A + LGL VR+ + + P+++ F A+ GAI +
Sbjct: 82 ELTLLRSQLVN-ESSLAAMALRLGLAGHVRLGRGEENQGGRSRPSLLSDVFEAVVGAIFL 140
Query: 159 DTG 161
D G
Sbjct: 141 DGG 143
>gi|359790204|ref|ZP_09293113.1| ribonuclease III [Mesorhizobium alhagi CCNWXJ12-2]
gi|359253884|gb|EHK56961.1| ribonuclease III [Mesorhizobium alhagi CCNWXJ12-2]
Length = 239
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSS---FSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
E + ++ GY F+ +LRRA+TH+S +N L LG V+ ++ L + D
Sbjct: 13 EAIGERTGYVFRDTAMLRRALTHASKRGSDGADNERLEFLGDRVLGLVIAEMLFRRYPDA 72
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGA 155
+L R++ + E SC V + +GL K++ P + V + A A+ A
Sbjct: 73 RQGELAVRLNALVSGE-SCGVIAIEIGLDKLIHADPVAKAAKGQRVGNALADAVEALIAA 131
Query: 156 IAVDTG 161
I +D G
Sbjct: 132 IYLDGG 137
>gi|153810622|ref|ZP_01963290.1| hypothetical protein RUMOBE_01006 [Ruminococcus obeum ATCC 29174]
gi|149833018|gb|EDM88100.1| ribonuclease III [Ruminococcus obeum ATCC 29174]
Length = 223
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
+E L++ IGYTF++ LL++A+THSS++ E N L LG V++ S L
Sbjct: 1 MEQLEQIIGYTFQNKKLLKQALTHSSYANEKKLGKLGCNERLEFLGDAVLELISSDFLYA 60
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
K + +L ++ + E S A GL + + + N T ++V A
Sbjct: 61 KFTQVPEGELTKKRASLV-CEPSLAYCARQFGLPQYLLLGKGENMTGGRNRDSIVSDATE 119
Query: 151 AIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 120 ALLGAIYLDGG 130
>gi|347539391|ref|YP_004846816.1| ribonuclease III [Pseudogulbenkiania sp. NH8B]
gi|345642569|dbj|BAK76402.1| ribonuclease III [Pseudogulbenkiania sp. NH8B]
Length = 238
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L +GY F LLR+A+TH SF NN +G +++ +V+ L ++ +S +L
Sbjct: 13 LSAALGYRFTRPELLRQALTHRSFGSPNNERFEFIGDSILNYTVARMLFDRFPRLSEGEL 72
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V+++S EI+ + D ++LG ++ P+++ A A F A++
Sbjct: 73 SRLRANLVNQSSLAEIALGLGLGDYLYLGEGEL----KSGGFNRPSILADALEATFAAVS 128
Query: 158 VDT 160
D+
Sbjct: 129 FDS 131
>gi|451982016|ref|ZP_21930351.1| Ribonuclease III [Nitrospina gracilis 3/211]
gi|451760760|emb|CCQ91627.1| Ribonuclease III [Nitrospina gracilis 3/211]
Length = 241
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 18/143 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNK 95
L LQ +GYTFK I LL +A+TH S+ E NN +G V+D VS ++
Sbjct: 10 LAQLQINLGYTFKDILLLNKALTHKSYVNEKSEAIKNNERFEFMGDSVLDVVVSHYMVKT 69
Query: 96 DIDISPKDLNR-RVSETSNVEIS------CAVDGMHLGLQKVVRVSPKTNSTVPAVVCGA 148
D S L++ R + + ++ C D + LG + + NS ++ A
Sbjct: 70 FQDFSEGLLSKIRAAVVNEACLAGLARDICLGDYLLLGRGEDLTGGRDKNS----ILANA 125
Query: 149 FRAIFGAIAVDTGKCDDAGDVFL 171
F A+ GA+ D+ + A DVFL
Sbjct: 126 FEAVAGAVYFDSN-LETAYDVFL 147
>gi|187477630|ref|YP_785654.1| ribonuclease III [Bordetella avium 197N]
gi|123514189|sp|Q2KWY0.1|RNC_BORA1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|115422216|emb|CAJ48740.1| ribonuclease III [Bordetella avium 197N]
Length = 251
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L TL+ ++G+ F LL +A+TH S +N L LG V++ V+ L + +
Sbjct: 2 SLATLETRLGHHFGDQALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYAKLD 61
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
DL+ RV + S A L L +R+ + P+++ A A+FGA+
Sbjct: 62 EGDLS-RVRANLVKQASLADIAQRLELSPYLRLGEGEMKSGGFRRPSILADAVEALFGAV 120
Query: 157 AVDTG 161
+D G
Sbjct: 121 FLDAG 125
>gi|209517222|ref|ZP_03266067.1| Ribonuclease III [Burkholderia sp. H160]
gi|209502358|gb|EEA02369.1| Ribonuclease III [Burkholderia sp. H160]
Length = 423
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSPLESRLRYEFRNAELLRQALTHRSHSSTHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ +G+ LG ++ P+++ A+ G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELR----SGGFRRPSILADTLEAVLG 118
Query: 155 AIAVDTG 161
AI +D G
Sbjct: 119 AIFLDGG 125
>gi|147669550|ref|YP_001214368.1| ribonuclease III [Dehalococcoides sp. BAV1]
gi|289432809|ref|YP_003462682.1| ribonuclease III [Dehalococcoides sp. GT]
gi|452203773|ref|YP_007483906.1| ribonuclease III [Dehalococcoides mccartyi DCMB5]
gi|146270498|gb|ABQ17490.1| RNAse III [Dehalococcoides sp. BAV1]
gi|288946529|gb|ADC74226.1| ribonuclease III [Dehalococcoides sp. GT]
gi|452110832|gb|AGG06564.1| ribonuclease III [Dehalococcoides mccartyi DCMB5]
Length = 248
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L L+ +G F+ LL +A+ H+S+ EN N + LG V+ + RL +
Sbjct: 15 LTELENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRLYH 74
Query: 95 KDIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
DI DL R V S V ++ ++ G +L L + VS PA + GAF
Sbjct: 75 DFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDVS--KGRFKPANLAGAF 132
Query: 150 RAIFGAIAVDTGKCDDAGDVFLRVHSGEVGK 180
A+ AI +D G D +V R+ E+ +
Sbjct: 133 EAVLAAIYIDKG-MDVTREVIFRLFKTEMER 162
>gi|291563451|emb|CBL42267.1| RNAse III [butyrate-producing bacterium SS3/4]
Length = 226
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
LE LQ+ IGY FK GLL A+THSS++ E N L LG V++ S L +
Sbjct: 5 LEKLQEMIGYQFKDPGLLTHALTHSSYANEKHWDKTRCNERLEFLGDAVLEVISSDFLFH 64
Query: 95 KDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRA 151
+ ++ + R S ++ D + LG ++ P+VV A A
Sbjct: 65 TYESMPEGEMTKLRASLVCEPTLAYCADVIPLGDYLLLGKGEDLTGGRKRPSVVSDAMEA 124
Query: 152 IFGAIAVDTG 161
+ GAI +D G
Sbjct: 125 VIGAIYLDGG 134
>gi|73748788|ref|YP_308027.1| ribonuclease III [Dehalococcoides sp. CBDB1]
gi|90101624|sp|Q3ZXY9.1|RNC_DEHSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|73660504|emb|CAI83111.1| ribonuclease III [Dehalococcoides sp. CBDB1]
Length = 237
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L L+ +G F+ LL +A+ H+S+ EN N + LG V+ + RL +
Sbjct: 4 LTELENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRLYH 63
Query: 95 KDIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
DI DL R V S V ++ ++ G +L L + VS PA + GAF
Sbjct: 64 DFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDVSK--GRFKPANLAGAF 121
Query: 150 RAIFGAIAVDTGKCDDAGDVFLRVHSGEVGK 180
A+ AI +D G D +V R+ E+ +
Sbjct: 122 EAVLAAIYIDKG-MDVTREVIFRLFKTEMER 151
>gi|295677176|ref|YP_003605700.1| ribonuclease III [Burkholderia sp. CCGE1002]
gi|295437019|gb|ADG16189.1| ribonuclease III [Burkholderia sp. CCGE1002]
Length = 426
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSPLESRLRYEFRNAELLRQALTHRSHSSTHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ +G+ LG ++ P+++ A+ G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELR----SGGFRRPSILADTLEAVLG 118
Query: 155 AIAVDTG 161
AI +D G
Sbjct: 119 AIFLDGG 125
>gi|83644632|ref|YP_433067.1| ribonuclease III [Hahella chejuensis KCTC 2396]
gi|123534042|sp|Q2SL32.1|RNC_HAHCH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|83632675|gb|ABC28642.1| ribonuclease III [Hahella chejuensis KCTC 2396]
Length = 226
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQ+ +GYTFK LL A+TH SF NN L LG V++ ++ L + +
Sbjct: 5 LERLQRALGYTFKEPALLTLALTHRSFGGRNNERLEFLGDSVLNFIIADYLFGRFEEARE 64
Query: 102 KDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
L+R R V ++ LG + +R+ + +++ A +I GAI
Sbjct: 65 GQLSRLRARMVKGVTLAEIAREFDLG--EYLRLGSGEMKSGGFRRESILADALESIIGAI 122
Query: 157 AVDTG 161
+D G
Sbjct: 123 YLDAG 127
>gi|255655258|ref|ZP_05400667.1| ribonuclease III [Clostridium difficile QCD-23m63]
gi|296451243|ref|ZP_06892983.1| ribonuclease III [Clostridium difficile NAP08]
gi|296880405|ref|ZP_06904368.1| ribonuclease III [Clostridium difficile NAP07]
gi|296259849|gb|EFH06704.1| ribonuclease III [Clostridium difficile NAP08]
gi|296428646|gb|EFH14530.1| ribonuclease III [Clostridium difficile NAP07]
Length = 236
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 12/139 (8%)
Query: 33 KTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTS 87
K S ++ + I Y FK+ + A+THSS+S EN N L LG V+
Sbjct: 2 KISKKLLDNIQRFENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIV 61
Query: 88 VSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVP 142
+S L N++ ++ +L + V E S E++ ++ G+H+ L + + + T
Sbjct: 62 ISDYLFNEEANLPEGELTKLRANIVCEDSLSEVANDINLGVHMLLGRGEEATGGRHRT-- 119
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ AI +D G
Sbjct: 120 SILADAFEAVIAAIYLDGG 138
>gi|196007068|ref|XP_002113400.1| hypothetical protein TRIADDRAFT_57522 [Trichoplax adhaerens]
gi|190583804|gb|EDV23874.1| hypothetical protein TRIADDRAFT_57522 [Trichoplax adhaerens]
Length = 213
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSS--------FSEENNRALGILGGYVIDTSVSLRLL 93
+E +QK++GY K+I LL +A+T S S+ NN+ L +G + + + +L
Sbjct: 22 IENMQKRLGYHIKNINLLLQALTRQSAIRQGIHYASKSNNQRLQWVGSNMFHSGIVYKLY 81
Query: 94 NKDID---ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
K + IS LN+ ++ TSN+ + + G +GL V ++ F
Sbjct: 82 EKYANNSYISTDYLNKVAINITSNMALVAEI-GKRIGLASCVFRGSDEEIITSEILAHTF 140
Query: 150 RAIFGAIAVDTGKCDDAGDVFLR 172
AI G+I +D G DV R
Sbjct: 141 LAILGSITLDDGGQKAVHDVIER 163
>gi|91784707|ref|YP_559913.1| ribonuclease III [Burkholderia xenovorans LB400]
gi|91688661|gb|ABE31861.1| RNAse III [Burkholderia xenovorans LB400]
Length = 428
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 65/127 (51%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSPLESRLRYEFRNAELLRQALTHRSHSSTHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ +G+ LG ++ + P+++ A+ G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELRSGGFRR----PSILADTLEAVLG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|260220751|emb|CBA28629.1| Ribonuclease 3 [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 224
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
+ LQ+++ + F ++ LL RA+TH SFS ++ L LG V+ ++S L ++ ++
Sbjct: 1 MTALQQRLQHQFSNVSLLSRALTHRSFSADHYERLEFLGDSVLGLAISDLLYSRLGNLPE 60
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSP-KTNSTVP---AVVCGAFRAIFGAIA 157
DL+R + E + + LGL V+++ + S P +++ A AI GA+
Sbjct: 61 GDLSRVRANLVRQETLHQL-ALKLGLPDVLKLGEGEMRSGGPKRASILADALEAIIGAVY 119
Query: 158 VDTG 161
+D G
Sbjct: 120 LDAG 123
>gi|118602619|ref|YP_903834.1| ribonuclease III [Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
gi|118567558|gb|ABL02363.1| RNAse III [Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
Length = 221
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
++ LQK+I Y FK + LL+ A+TH S + NN L LG ++ +S L + +I
Sbjct: 1 MKKLQKKINYQFKDLSLLKLALTHCSMGKNNNERLEFLGDSILGVIISKELYQRFPNIDE 60
Query: 102 KDLNR----RVSETSNVEISCAVD---GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
L+R V + + ++S ++ + LG ++ + S + A AIFG
Sbjct: 61 GKLSRLRSHLVRDQTLTQLSAGLELSNSLILGFGELKSGGYRRES----IQADAIEAIFG 116
Query: 155 AIAVDTG 161
A+ +D+
Sbjct: 117 AVLLDSN 123
>gi|312115946|ref|YP_004013542.1| ribonuclease III [Rhodomicrobium vannielii ATCC 17100]
gi|311221075|gb|ADP72443.1| ribonuclease III [Rhodomicrobium vannielii ATCC 17100]
Length = 236
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE----NNRALGILGGYVIDTSVSLRLLN--- 94
+E L+ +GY F+ GLL A+THSS E +N L LG V+ S++ L
Sbjct: 8 VEELEASLGYKFQERGLLAEALTHSSARSEKGGRDNERLEFLGDRVLGLSIAALLFERFP 67
Query: 95 --KDIDISPKDLNRRVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFRA 151
++++++ + N V +T+ E++ ++ G HL + S V ++ A A
Sbjct: 68 KAREVELA-RHFNALVCKTTCAEVALKLELGPHLVMAPSEARSGGRKKDV--ILADAVEA 124
Query: 152 IFGAIAVDTG 161
+ GAI+VD G
Sbjct: 125 LLGAISVDGG 134
>gi|440738767|ref|ZP_20918291.1| ribonuclease III [Pseudomonas fluorescens BRIP34879]
gi|440380581|gb|ELQ17143.1| ribonuclease III [Pseudomonas fluorescens BRIP34879]
Length = 229
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L L++Q+GYTFK L+ A+TH SF+ NN L LG V++ + L +
Sbjct: 4 SLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAVLNFAAGEALFERFPQAR 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
L+R + E + AV GL + +R+ + +++ A A+ GAI
Sbjct: 64 EGQLSRLRARLVKGE-TLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122
Query: 157 AVDTG 161
+D G
Sbjct: 123 YLDAG 127
>gi|381393604|ref|ZP_09919325.1| ribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379330820|dbj|GAB54458.1| ribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 224
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 48 QIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRR 107
Q+ YTF ++ LL++A+TH S + ++N L LG V+ ++ R+ K ++ L R
Sbjct: 11 QLHYTFSNVSLLQQALTHRSAARKHNERLEFLGDAVLGLVIAQRVYEKFPNLPEGKLTRM 70
Query: 108 VSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDTG 161
S E V L L +++++ P + +++ A AI GAI V++G
Sbjct: 71 RSNLVKGETLAKV-ARELSLGELMKLGPGEMKSGGRRRDSILADAVEAILGAIYVESG 127
>gi|418634085|ref|ZP_13196483.1| ribonuclease III [Staphylococcus epidermidis VCU129]
gi|420189846|ref|ZP_14695805.1| ribonuclease III [Staphylococcus epidermidis NIHLM037]
gi|420204155|ref|ZP_14709715.1| ribonuclease III [Staphylococcus epidermidis NIHLM015]
gi|374838077|gb|EHS01634.1| ribonuclease III [Staphylococcus epidermidis VCU129]
gi|394259961|gb|EJE04787.1| ribonuclease III [Staphylococcus epidermidis NIHLM037]
gi|394274169|gb|EJE18594.1| ribonuclease III [Staphylococcus epidermidis NIHLM015]
Length = 245
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 27 ANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGIL 79
AN ++ + F K +G FK+I L ++A +HSSF E+N L L
Sbjct: 2 ANQKKKEMVHDFQQKFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFL 61
Query: 80 GGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPK 136
G V++ +VS L ++ + +L ++ T E S + + L +++ + K
Sbjct: 62 GDAVLELTVSRYLFDRHPHLPEGNLT-KMRATIVCEPSLVIFANKIKLNELILLGKGEEK 120
Query: 137 TNS-TVPAVVCGAFRAIFGAIAVDTG 161
T T P+++ AF A GA+ +D G
Sbjct: 121 TGGRTRPSLISDAFEAFVGALYLDQG 146
>gi|359300160|ref|ZP_09185999.1| ribonuclease III [Haemophilus [parainfluenzae] CCUG 13788]
gi|402305203|ref|ZP_10824262.1| ribonuclease III [Haemophilus sputorum HK 2154]
gi|400376316|gb|EJP29203.1| ribonuclease III [Haemophilus sputorum HK 2154]
Length = 223
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++GY F+++ L +A+TH S + +NN L LG +++ ++ L ++ +
Sbjct: 3 LERLQKKLGYQFETLDYLTQALTHRSAASKNNERLEFLGDSILNFAIGKALFDQFPKANE 62
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A+ L + +++ P +++ AI AI
Sbjct: 63 GELS-RMRATLVREHTLAMIAREFNLGEFLKLGPGELKSGGHRRESILADCVEAIIAAIY 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDKG 125
>gi|374308055|ref|YP_005054486.1| ribonuclease III [Filifactor alocis ATCC 35896]
gi|291165574|gb|EFE27623.1| ribonuclease III [Filifactor alocis ATCC 35896]
Length = 229
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L+ QK+IGYTF+ LLR A+TH+S+ EN N L LG ++ VS L
Sbjct: 4 LKEFQKKIGYTFQDEKLLREALTHTSYINENRNKNLRPNERLEFLGDSILGVVVSTYLFE 63
Query: 95 KDIDISPKDLNR 106
K D+ +L++
Sbjct: 64 KRKDLPEGELSK 75
>gi|374367226|ref|ZP_09625293.1| ribonuclease III [Cupriavidus basilensis OR16]
gi|373101234|gb|EHP42288.1| ribonuclease III [Cupriavidus basilensis OR16]
Length = 256
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ+++GY F LL++A+TH S S +N L LG V++ +V+ L +
Sbjct: 3 LDALQQRLGYRFSKPELLQQALTHRSHSALHNERLEFLGDSVLNCAVADMLYGMFSKLDE 62
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
DL+R + + + M L L + +R+ + P+++ A AI GA+
Sbjct: 63 GDLSRVRANLVKQQALYEIAQM-LQLSEALRLGEGELKSGGFRRPSILADALEAIVGAVF 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDAG 125
>gi|418327708|ref|ZP_12938850.1| ribonuclease III [Staphylococcus epidermidis 14.1.R1.SE]
gi|365232738|gb|EHM73724.1| ribonuclease III [Staphylococcus epidermidis 14.1.R1.SE]
Length = 245
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 27 ANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGIL 79
AN ++ + F K +G FK+I L ++A +HSSF E+N L L
Sbjct: 2 ANQKKKEMVHDFQQKFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFL 61
Query: 80 GGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPK 136
G V++ +VS L ++ + +L ++ T E S + + L +++ + K
Sbjct: 62 GDAVLELTVSRYLFDRHPHLPEGNLT-KMRATIVCEPSLVIFANKIKLNELILLGKGEEK 120
Query: 137 TNS-TVPAVVCGAFRAIFGAIAVDTG 161
T T P+++ AF A GA+ +D G
Sbjct: 121 TGGRTRPSLISDAFEAFVGALYLDQG 146
>gi|418325035|ref|ZP_12936245.1| ribonuclease III [Staphylococcus epidermidis VCU071]
gi|365228941|gb|EHM70113.1| ribonuclease III [Staphylococcus epidermidis VCU071]
Length = 245
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 27 ANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGIL 79
AN ++ + F K +G FK+I L ++A +HSSF E+N L L
Sbjct: 2 ANQKKKEMVHDFQQKFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFL 61
Query: 80 GGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPK 136
G V++ +VS L ++ + +L ++ T E S + + L +++ + K
Sbjct: 62 GDAVLELTVSRYLFDRHPHLPEGNLT-KMRATIVCEPSLVIFANKIKLNELILLGKGEEK 120
Query: 137 TNS-TVPAVVCGAFRAIFGAIAVDTG 161
T T P+++ AF A GA+ +D G
Sbjct: 121 TGGRTRPSLISDAFEAFVGALYLDQG 146
>gi|293366802|ref|ZP_06613478.1| ribonuclease III [Staphylococcus epidermidis M23864:W2(grey)]
gi|417658914|ref|ZP_12308527.1| ribonuclease III [Staphylococcus epidermidis VCU045]
gi|417909787|ref|ZP_12553520.1| ribonuclease III [Staphylococcus epidermidis VCU037]
gi|418605354|ref|ZP_13168679.1| ribonuclease III [Staphylococcus epidermidis VCU041]
gi|418616695|ref|ZP_13179619.1| ribonuclease III [Staphylococcus epidermidis VCU120]
gi|420169777|ref|ZP_14676355.1| ribonuclease III [Staphylococcus epidermidis NIHLM070]
gi|420182903|ref|ZP_14689036.1| ribonuclease III [Staphylococcus epidermidis NIHLM049]
gi|420194029|ref|ZP_14699858.1| ribonuclease III [Staphylococcus epidermidis NIHLM021]
gi|420197124|ref|ZP_14702848.1| ribonuclease III [Staphylococcus epidermidis NIHLM020]
gi|420209488|ref|ZP_14714925.1| ribonuclease III [Staphylococcus epidermidis NIHLM003]
gi|420211876|ref|ZP_14717232.1| ribonuclease III [Staphylococcus epidermidis NIHLM001]
gi|420214287|ref|ZP_14719566.1| ribonuclease III [Staphylococcus epidermidis NIH05005]
gi|420216117|ref|ZP_14721339.1| ribonuclease III [Staphylococcus epidermidis NIH05001]
gi|420220014|ref|ZP_14725004.1| ribonuclease III [Staphylococcus epidermidis NIH04008]
gi|420221975|ref|ZP_14726900.1| ribonuclease III [Staphylococcus epidermidis NIH08001]
gi|420224838|ref|ZP_14729676.1| ribonuclease III [Staphylococcus epidermidis NIH06004]
gi|420227024|ref|ZP_14731797.1| ribonuclease III [Staphylococcus epidermidis NIH05003]
gi|420229346|ref|ZP_14734052.1| ribonuclease III [Staphylococcus epidermidis NIH04003]
gi|420231705|ref|ZP_14736350.1| ribonuclease III [Staphylococcus epidermidis NIH051668]
gi|420234393|ref|ZP_14738956.1| ribonuclease III [Staphylococcus epidermidis NIH051475]
gi|291319103|gb|EFE59473.1| ribonuclease III [Staphylococcus epidermidis M23864:W2(grey)]
gi|329736553|gb|EGG72819.1| ribonuclease III [Staphylococcus epidermidis VCU045]
gi|341652396|gb|EGS76184.1| ribonuclease III [Staphylococcus epidermidis VCU037]
gi|374402451|gb|EHQ73476.1| ribonuclease III [Staphylococcus epidermidis VCU041]
gi|374820773|gb|EHR84849.1| ribonuclease III [Staphylococcus epidermidis VCU120]
gi|394243077|gb|EJD88451.1| ribonuclease III [Staphylococcus epidermidis NIHLM070]
gi|394249366|gb|EJD94579.1| ribonuclease III [Staphylococcus epidermidis NIHLM049]
gi|394265931|gb|EJE10577.1| ribonuclease III [Staphylococcus epidermidis NIHLM020]
gi|394266727|gb|EJE11352.1| ribonuclease III [Staphylococcus epidermidis NIHLM021]
gi|394278935|gb|EJE23247.1| ribonuclease III [Staphylococcus epidermidis NIHLM003]
gi|394280386|gb|EJE24667.1| ribonuclease III [Staphylococcus epidermidis NIHLM001]
gi|394283652|gb|EJE27817.1| ribonuclease III [Staphylococcus epidermidis NIH05005]
gi|394287021|gb|EJE30995.1| ribonuclease III [Staphylococcus epidermidis NIH04008]
gi|394290006|gb|EJE33876.1| ribonuclease III [Staphylococcus epidermidis NIH08001]
gi|394292567|gb|EJE36309.1| ribonuclease III [Staphylococcus epidermidis NIH05001]
gi|394294241|gb|EJE37927.1| ribonuclease III [Staphylococcus epidermidis NIH06004]
gi|394297525|gb|EJE41122.1| ribonuclease III [Staphylococcus epidermidis NIH05003]
gi|394299112|gb|EJE42663.1| ribonuclease III [Staphylococcus epidermidis NIH04003]
gi|394302247|gb|EJE45695.1| ribonuclease III [Staphylococcus epidermidis NIH051668]
gi|394304196|gb|EJE47603.1| ribonuclease III [Staphylococcus epidermidis NIH051475]
Length = 245
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 27 ANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGIL 79
AN ++ + F K +G FK+I L ++A +HSSF E+N L L
Sbjct: 2 ANQKKKEMVHDFQQKFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFL 61
Query: 80 GGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPK 136
G V++ +VS L ++ + +L ++ T E S + + L +++ + K
Sbjct: 62 GDAVLELTVSRYLFDRHPHLPEGNLT-KMRATIVCEPSLVIFANKIKLNELILLGKGEEK 120
Query: 137 TNS-TVPAVVCGAFRAIFGAIAVDTG 161
T T P+++ AF A GA+ +D G
Sbjct: 121 TGGRTRPSLISDAFEAFVGALYLDQG 146
>gi|335424915|ref|ZP_08553908.1| RNAse III [Salinisphaera shabanensis E1L3A]
gi|334887046|gb|EGM25385.1| RNAse III [Salinisphaera shabanensis E1L3A]
Length = 233
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
L++ +GY FK LL RA+TH S ++N L LG V++ +++ L + D D
Sbjct: 14 ALEQHLGYGFKDRALLNRALTHRSAEADHNERLEFLGDGVLNFTIAAALFEQCPDAPEGD 73
Query: 104 LNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST--VPAVVCGAFRAIFGAIAVDT 160
L+R R S ++ + LG V+ N + +++ A+ GAI +
Sbjct: 74 LSRLRASLVRETTLAAIAKEIELGAAIVLGPGEMRNGSRRRASILADGVEALLGAIYCEN 133
Query: 161 G 161
G
Sbjct: 134 G 134
>gi|57866684|ref|YP_188382.1| ribonuclease III [Staphylococcus epidermidis RP62A]
gi|242242516|ref|ZP_04796961.1| ribonuclease III [Staphylococcus epidermidis W23144]
gi|416124365|ref|ZP_11595361.1| ribonuclease III [Staphylococcus epidermidis FRI909]
gi|418612928|ref|ZP_13175949.1| ribonuclease III [Staphylococcus epidermidis VCU117]
gi|418615151|ref|ZP_13178100.1| ribonuclease III [Staphylococcus epidermidis VCU118]
gi|418626724|ref|ZP_13189320.1| ribonuclease III [Staphylococcus epidermidis VCU126]
gi|418630347|ref|ZP_13192829.1| ribonuclease III [Staphylococcus epidermidis VCU128]
gi|420174998|ref|ZP_14681444.1| ribonuclease III [Staphylococcus epidermidis NIHLM061]
gi|420177376|ref|ZP_14683712.1| ribonuclease III [Staphylococcus epidermidis NIHLM057]
gi|420179860|ref|ZP_14686136.1| ribonuclease III [Staphylococcus epidermidis NIHLM053]
gi|420191718|ref|ZP_14697629.1| ribonuclease III [Staphylococcus epidermidis NIHLM023]
gi|420199019|ref|ZP_14704703.1| ribonuclease III [Staphylococcus epidermidis NIHLM031]
gi|73917583|sp|Q5HPV8.1|RNC_STAEQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|57637342|gb|AAW54130.1| ribonuclease III [Staphylococcus epidermidis RP62A]
gi|242234024|gb|EES36336.1| ribonuclease III [Staphylococcus epidermidis W23144]
gi|319401475|gb|EFV89685.1| ribonuclease III [Staphylococcus epidermidis FRI909]
gi|374817238|gb|EHR81423.1| ribonuclease III [Staphylococcus epidermidis VCU117]
gi|374818225|gb|EHR82393.1| ribonuclease III [Staphylococcus epidermidis VCU118]
gi|374831268|gb|EHR95010.1| ribonuclease III [Staphylococcus epidermidis VCU126]
gi|374837888|gb|EHS01446.1| ribonuclease III [Staphylococcus epidermidis VCU128]
gi|394244531|gb|EJD89873.1| ribonuclease III [Staphylococcus epidermidis NIHLM061]
gi|394247760|gb|EJD93002.1| ribonuclease III [Staphylococcus epidermidis NIHLM057]
gi|394252338|gb|EJD97375.1| ribonuclease III [Staphylococcus epidermidis NIHLM053]
gi|394265869|gb|EJE10516.1| ribonuclease III [Staphylococcus epidermidis NIHLM023]
gi|394272705|gb|EJE17155.1| ribonuclease III [Staphylococcus epidermidis NIHLM031]
Length = 245
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 27 ANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGIL 79
AN ++ + F K +G FK+I L ++A +HSSF E+N L L
Sbjct: 2 ANQKKKEMVHDFQQKFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFL 61
Query: 80 GGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPK 136
G V++ +VS L ++ + +L ++ T E S + + L +++ + K
Sbjct: 62 GDAVLELTVSRYLFDRHPHLPEGNLT-KMRATIVCEPSLVIFANKIKLNELILLGKGEEK 120
Query: 137 TNS-TVPAVVCGAFRAIFGAIAVDTG 161
T T P+++ AF A GA+ +D G
Sbjct: 121 TGGRTRPSLISDAFEAFVGALYLDQG 146
>gi|146329595|ref|YP_001209601.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
gi|146233065|gb|ABQ14043.1| ribonuclease III [Dichelobacter nodosus VCS1703A]
Length = 233
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
+ L+ +GY+F++ LL+RA+TH SFS ++N LG +++T +S+ L + +
Sbjct: 9 WQLLEHALGYSFQNPELLQRALTHRSFSADHNERFEYLGDALLETVISVALYRRYPESPE 68
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS----PKTNSTVPAVVCGAFRAIFGAIA 157
DL R + S AV L L + +R+ +++ A AI A+
Sbjct: 69 GDLTRLRAAIVKSS-SLAVIAKQLDLGRYLRLGSGELKSGGKRRESILADAVEAIIAAVY 127
Query: 158 VDTG--KCD 164
+D+ +C+
Sbjct: 128 LDSDFYRCE 136
>gi|420185462|ref|ZP_14691554.1| ribonuclease III [Staphylococcus epidermidis NIHLM040]
gi|394254448|gb|EJD99417.1| ribonuclease III [Staphylococcus epidermidis NIHLM040]
Length = 245
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 27 ANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGIL 79
AN ++ + F K +G FK+I L ++A +HSSF E+N L L
Sbjct: 2 ANQKKKEMVHDFQQKFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFL 61
Query: 80 GGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPK 136
G V++ +VS L ++ + +L ++ T E S + + L +++ + K
Sbjct: 62 GDAVLELTVSRYLFDRHPHLPEGNLT-KMRATIVCEPSLVIFANKIKLNELILLGKGEEK 120
Query: 137 TNS-TVPAVVCGAFRAIFGAIAVDTG 161
T T P+++ AF A GA+ +D G
Sbjct: 121 TGGRTRPSLISDAFEAFVGALYLDQG 146
>gi|152993835|ref|YP_001359556.1| ribonuclease III [Sulfurovum sp. NBC37-1]
gi|189043369|sp|A6QCJ0.1|RNC_SULNB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|151425696|dbj|BAF73199.1| ribonuclease III [Sulfurovum sp. NBC37-1]
Length = 223
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 11/136 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNK----DIDI 99
L+K++ YTFK L+ A+TH S+ + NN L LG V+D V L K D I
Sbjct: 7 LEKRLNYTFKDKQLIIEALTHKSYKKPYNNERLEFLGDAVLDLIVGEYLFKKFPKSDEGI 66
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIA 157
K V+E+ ++ +D LG + ++ + N+ P+++ AF AI GA+
Sbjct: 67 LSKIRASLVNESGFTLLARKID---LGSYIYLSLAEENNNGRDKPSLLSNAFEAIIGAVY 123
Query: 158 VDTGKCDDAGDVFLRV 173
++ G D A ++ +++
Sbjct: 124 LEAG-LDTAKEISIKL 138
>gi|427722715|ref|YP_007069992.1| RNAse III [Leptolyngbya sp. PCC 7376]
gi|427354435|gb|AFY37158.1| RNAse III [Leptolyngbya sp. PCC 7376]
Length = 258
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 53 FKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNR 106
F+ GLL +A+THSS+ E +N L LG V+ + L + ++ +L+R
Sbjct: 7 FRDEGLLTQALTHSSYCNEHPEVKQDNERLEFLGDAVLKFVMGKLLYEQFPELQEGELSR 66
Query: 107 RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVCGAFRAIFGAIAVDTG 161
+ N A M LGL ++R+ T + P ++ AF AI GA +D G
Sbjct: 67 LRAGLENNRHQLATFAMDLGLDSLLRLGKGTENIGARQNPEILSDAFEAIVGAYFLDAG 125
>gi|406967275|gb|EKD92397.1| hypothetical protein ACD_29C00026G0001, partial [uncultured
bacterium]
Length = 166
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSE-ENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
LQ+++G+ FK LL A+TH S + ENN L LG V+ +S L +K +
Sbjct: 7 LQQKLGHVFKDESLLICALTHRSTQQSENNERLEFLGDAVLSLIISTELFSKYAHFREGE 66
Query: 104 LNRRVSETSNVEISCAVDGMHLGLQKVVRV---SPKTNSTV-PAVVCGAFRAIFGAIAVD 159
L+R + E + A LG+ KV+R+ K+ + +++ GAF ++ GAI D
Sbjct: 67 LSRMRAALVKGE-TIAKIAAALGIGKVLRLGVGELKSGGKLRESILAGAFESVIGAIYCD 125
Query: 160 T 160
+
Sbjct: 126 S 126
>gi|386391878|ref|ZP_10076659.1| ribonuclease III [Desulfovibrio sp. U5L]
gi|385732756|gb|EIG52954.1| ribonuclease III [Desulfovibrio sp. U5L]
Length = 239
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALG------ILGGYVIDTSVSLRLLN 94
+L +Q+ +G+ F LL A+THSS++ E ALG LG V++ VS L
Sbjct: 4 SLAVVQEALGHAFARPELLTAALTHSSWANERGDALGHNERLEFLGDAVLELCVSEELFA 63
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSP----KTNSTVPAVVCGAFR 150
+ + +L S+ N E S A L L++ V + + + PA++ AF
Sbjct: 64 RFPEAPEGELTLLRSQLVN-EGSLAAMARRLSLEEHVLLGKGEENQGGRSRPALLSDAFE 122
Query: 151 AIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 123 AVIGAIFLDGG 133
>gi|331005223|ref|ZP_08328616.1| Ribonuclease III [gamma proteobacterium IMCC1989]
gi|330420966|gb|EGG95239.1| Ribonuclease III [gamma proteobacterium IMCC1989]
Length = 217
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQK+I Y F LL A+TH SFS NN L LG ++ ++S +L + D+
Sbjct: 7 LKQLQKRIDYQFSDESLLETALTHRSFSSTNNERLEFLGDSLLGVTISQQLFEQFPDVKE 66
Query: 102 KDLNRRVS 109
L+R+ S
Sbjct: 67 GILSRQRS 74
>gi|357632354|ref|ZP_09130232.1| ribonuclease III [Desulfovibrio sp. FW1012B]
gi|357580908|gb|EHJ46241.1| ribonuclease III [Desulfovibrio sp. FW1012B]
Length = 239
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 11/127 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALG------ILGGYVIDTSVSLRLLNKDID 98
+Q+ +G+ F LL A+THSS++ E ALG LG V++ VS L + +
Sbjct: 8 VQEALGHAFARPELLTAALTHSSWANERGDALGHNERLEFLGDAVLELCVSEELFVRFPE 67
Query: 99 ISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSP----KTNSTVPAVVCGAFRAIFG 154
+L S+ N E S A L L++ V + + T PA++ AF A+ G
Sbjct: 68 APEGELTLLRSQLVN-EGSLAAMARRLSLEEHVLLGKGEENQGGRTRPALLSDAFEAVIG 126
Query: 155 AIAVDTG 161
AI +D G
Sbjct: 127 AIFLDGG 133
>gi|163814044|ref|ZP_02205436.1| hypothetical protein COPEUT_00197 [Coprococcus eutactus ATCC 27759]
gi|158450493|gb|EDP27488.1| ribonuclease III [Coprococcus eutactus ATCC 27759]
Length = 232
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNK 95
+ L+K+IGY FK I LL A+TH+SF+ E + L LG +++ VS L K
Sbjct: 9 DELEKKIGYQFKDINLLITALTHTSFANELKVNKTDSYERLEFLGDAILEYIVSEYLFLK 68
Query: 96 DIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
+ L + R S +S + LG VR+S T +++C F
Sbjct: 69 KKEYEEGRLTKLRASLVCEFTLSQISES--LGYGDYVRLSKGEELTGGRKRKSILCDLFE 126
Query: 151 AIFGAIAVDTG 161
++ GA+ +D G
Sbjct: 127 SVLGAMYLDGG 137
>gi|449133751|ref|ZP_21769275.1| ribonuclease III [Rhodopirellula europaea 6C]
gi|448887627|gb|EMB17992.1| ribonuclease III [Rhodopirellula europaea 6C]
Length = 296
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 37 PFATALETLQKQ---IGYTFKSIGLLRRAMTHSSFSEE---NNRALGILGGYVIDTSVSL 90
P+A A+ +Q+ +GY F+ + LLR A+TH+S + +N L LG V+ +V
Sbjct: 56 PYADAVAKIQRCQEILGYEFQDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVCE 115
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQK---VVRVSPKTNSTVPAVVCG 147
L N+ + S DL + S + SC LGL + V R + S ++V
Sbjct: 116 WLFNEYPEYSEGDLTKIKSAVVSRR-SCGKVACKLGLDQCLIVGRGVTRNRSYPKSLVSD 174
Query: 148 AFRAIFGAIAVDTG 161
F A+ A+ +D G
Sbjct: 175 VFEAVIAALYIDGG 188
>gi|242373525|ref|ZP_04819099.1| ribonuclease III [Staphylococcus epidermidis M23864:W1]
gi|242348888|gb|EES40490.1| ribonuclease III [Staphylococcus epidermidis M23864:W1]
Length = 248
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 27 ANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGIL 79
AN ++ F + G++F +I L ++A +HSSF + +N L L
Sbjct: 2 ANQKKIDMVKDFQQTFTNKMNEWGFSFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFL 61
Query: 80 GGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSP 135
G V++ +VS L +K + +L + V E S V + +D L L + +
Sbjct: 62 GDAVLELTVSRYLFDKHPHLPEGNLTKMRATIVCEPSLVIFANKIDLNELIL--LGKGEE 119
Query: 136 KTNS-TVPAVVCGAFRAIFGAIAVDTG 161
KT T P+++ AF A GA+ +D G
Sbjct: 120 KTGGRTRPSLISDAFEAFVGALYLDQG 146
>gi|385208648|ref|ZP_10035516.1| ribonuclease III [Burkholderia sp. Ch1-1]
gi|385180986|gb|EIF30262.1| ribonuclease III [Burkholderia sp. Ch1-1]
Length = 416
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSPLESRLRYEFRNAELLRQALTHRSHSSTHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ +G+ LG ++ P+++ A+ G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELR----SGGFRRPSILADTLEAVLG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|433462279|ref|ZP_20419866.1| ribonuclease III [Halobacillus sp. BAB-2008]
gi|432188967|gb|ELK46109.1| ribonuclease III [Halobacillus sp. BAB-2008]
Length = 230
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALGILGGYVIDTSVSLRLLNKD 96
+ Q +I F+ I LL +A THSS+ E+N L LG V++ VS L +
Sbjct: 6 SFQNKINIKFRDISLLEQAFTHSSYVNEHRKTDREDNERLEFLGDAVLELGVSQYLYREF 65
Query: 97 IDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGA 148
D++ +L + V E S VE + L Q+++ + T PA++
Sbjct: 66 PDMAEGELTKFRASIVCEVSLVEFAN-----ELNFQELILLGKGEEMTGGRNRPALLADV 120
Query: 149 FRAIFGAIAVDTG 161
F A GA+ +D G
Sbjct: 121 FEAFIGALYLDQG 133
>gi|335429770|ref|ZP_08556668.1| ribonuclease III [Haloplasma contractile SSD-17B]
gi|334889780|gb|EGM28065.1| ribonuclease III [Haloplasma contractile SSD-17B]
Length = 239
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 47 KQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDIDI 99
KQ FK LL RA+THSS+ E +N L LG V++ ++S L D+
Sbjct: 15 KQHELEFKDRSLLIRALTHSSYVNEHRTEDLKDNERLEFLGDAVLELAMSRYLFLNLPDV 74
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGA 155
+ + +R ++ E S + + L K++R+ T PA++ AF A+ GA
Sbjct: 75 NEGVMTKRRAQYV-CEPSLELYANKINLGKLIRLGKGEEHTGGRKRPAILADAFEALLGA 133
Query: 156 IAVDTG 161
I +D G
Sbjct: 134 IYLDLG 139
>gi|222824476|ref|YP_002576050.1| ribonuclease III [Campylobacter lari RM2100]
gi|222539697|gb|ACM64798.1| ribonuclease III [Campylobacter lari RM2100]
Length = 222
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 10/127 (7%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE-ENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
L+ LQ+++ Y FK+ LL A+TH S+ + NN L LG V+D V L K S
Sbjct: 2 LKKLQERLNYHFKNEQLLIEALTHKSYKKPYNNERLEFLGDAVMDLVVGEFLFFKFQKES 61
Query: 101 PKDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFG 154
+L++ V+E S ++ +D LG + ++ + N P+++ AF A+ G
Sbjct: 62 EGNLSKLRAALVNEKSFANLAQKLD---LGECIFMSIAEENNDGRNKPSILSDAFEALMG 118
Query: 155 AIAVDTG 161
A+ ++ G
Sbjct: 119 AMYLEIG 125
>gi|187924875|ref|YP_001896517.1| ribonuclease III [Burkholderia phytofirmans PsJN]
gi|187716069|gb|ACD17293.1| Ribonuclease III [Burkholderia phytofirmans PsJN]
Length = 418
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSPLESRLRYEFRNAELLRQALTHRSHSSTHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ +G+ LG ++ P+++ A+ G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISEGLRLGEGELR----SGGFRRPSILADTLEAVLG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDGG 125
>gi|27467826|ref|NP_764463.1| ribonuclease III [Staphylococcus epidermidis ATCC 12228]
gi|251810663|ref|ZP_04825136.1| RNase III [Staphylococcus epidermidis BCM-HMP0060]
gi|282876335|ref|ZP_06285202.1| ribonuclease III [Staphylococcus epidermidis SK135]
gi|417656673|ref|ZP_12306356.1| ribonuclease III [Staphylococcus epidermidis VCU028]
gi|417913418|ref|ZP_12557085.1| ribonuclease III [Staphylococcus epidermidis VCU109]
gi|418606371|ref|ZP_13169652.1| ribonuclease III [Staphylococcus epidermidis VCU057]
gi|418609830|ref|ZP_13172964.1| ribonuclease III [Staphylococcus epidermidis VCU065]
gi|418624464|ref|ZP_13187139.1| ribonuclease III [Staphylococcus epidermidis VCU125]
gi|418664677|ref|ZP_13226143.1| ribonuclease III [Staphylococcus epidermidis VCU081]
gi|419768682|ref|ZP_14294798.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-250]
gi|419772616|ref|ZP_14298647.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-K]
gi|420165231|ref|ZP_14671935.1| ribonuclease III [Staphylococcus epidermidis NIHLM088]
gi|420172767|ref|ZP_14679265.1| ribonuclease III [Staphylococcus epidermidis NIHLM067]
gi|420202053|ref|ZP_14707648.1| ribonuclease III [Staphylococcus epidermidis NIHLM018]
gi|421607265|ref|ZP_16048511.1| ribonuclease III [Staphylococcus epidermidis AU12-03]
gi|32129970|sp|Q8CPI1.1|RNC_STAES RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|27315371|gb|AAO04505.1|AE016747_2 RNase III [Staphylococcus epidermidis ATCC 12228]
gi|251805823|gb|EES58480.1| RNase III [Staphylococcus epidermidis BCM-HMP0060]
gi|281295360|gb|EFA87887.1| ribonuclease III [Staphylococcus epidermidis SK135]
gi|329736334|gb|EGG72606.1| ribonuclease III [Staphylococcus epidermidis VCU028]
gi|341655700|gb|EGS79424.1| ribonuclease III [Staphylococcus epidermidis VCU109]
gi|374406166|gb|EHQ77069.1| ribonuclease III [Staphylococcus epidermidis VCU065]
gi|374408324|gb|EHQ79155.1| ribonuclease III [Staphylococcus epidermidis VCU057]
gi|374410123|gb|EHQ80884.1| ribonuclease III [Staphylococcus epidermidis VCU081]
gi|374827693|gb|EHR91554.1| ribonuclease III [Staphylococcus epidermidis VCU125]
gi|383359243|gb|EID36673.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-K]
gi|383359508|gb|EID36931.1| ribonuclease III [Staphylococcus aureus subsp. aureus IS-250]
gi|394236398|gb|EJD81932.1| ribonuclease III [Staphylococcus epidermidis NIHLM088]
gi|394241444|gb|EJD86858.1| ribonuclease III [Staphylococcus epidermidis NIHLM067]
gi|394270026|gb|EJE14549.1| ribonuclease III [Staphylococcus epidermidis NIHLM018]
gi|406657057|gb|EKC83450.1| ribonuclease III [Staphylococcus epidermidis AU12-03]
Length = 245
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 27 ANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGIL 79
AN ++ + F K +G FK+I L ++A +HSSF E+N L L
Sbjct: 2 ANQKKKEMVHNFQQKFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFL 61
Query: 80 GGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPK 136
G V++ +VS L ++ + +L ++ T E S + + L +++ + K
Sbjct: 62 GDAVLELTVSRYLFDRHPHLPEGNLT-KMRATIVCEPSLVIFANKIKLNELILLGKGEEK 120
Query: 137 TNS-TVPAVVCGAFRAIFGAIAVDTG 161
T T P+++ AF A GA+ +D G
Sbjct: 121 TGGRTRPSLISDAFEAFVGALYLDQG 146
>gi|337750088|ref|YP_004644250.1| hypothetical protein KNP414_05856 [Paenibacillus mucilaginosus
KNP414]
gi|379722931|ref|YP_005315062.1| hypothetical protein PM3016_5198 [Paenibacillus mucilaginosus 3016]
gi|386725711|ref|YP_006192037.1| hypothetical protein B2K_26880 [Paenibacillus mucilaginosus K02]
gi|336301277|gb|AEI44380.1| Rnc [Paenibacillus mucilaginosus KNP414]
gi|378571603|gb|AFC31913.1| Rnc [Paenibacillus mucilaginosus 3016]
gi|384092836|gb|AFH64272.1| hypothetical protein B2K_26880 [Paenibacillus mucilaginosus K02]
Length = 234
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
L+ LQ ++ TF + LLR+A THSS+ E +N L LG V++ +VS L +
Sbjct: 5 LKLLQSELNITFSNPDLLRQAFTHSSYVNEHRIGQYKDNERLEFLGDAVLELTVSEYLFD 64
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
K D S +L + V E S V + ++ G ++ L K ++ T PA++ F
Sbjct: 65 KYPDRSEGELTKLRASIVCEPSLVGFAEQLEFGSYVLLGKGEELT--GGRTRPALLADVF 122
Query: 150 RAIFGAIAVDTG 161
+ GA+ +D G
Sbjct: 123 ESFIGALYLDQG 134
>gi|289550987|ref|YP_003471891.1| ribonuclease III [Staphylococcus lugdunensis HKU09-01]
gi|315658482|ref|ZP_07911354.1| ribonuclease III [Staphylococcus lugdunensis M23590]
gi|385784608|ref|YP_005760781.1| putative ribonuclease III [Staphylococcus lugdunensis N920143]
gi|418414283|ref|ZP_12987498.1| ribonuclease 3 [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|418635654|ref|ZP_13198024.1| ribonuclease III [Staphylococcus lugdunensis VCU139]
gi|289180519|gb|ADC87764.1| Ribonuclease III [Staphylococcus lugdunensis HKU09-01]
gi|315496811|gb|EFU85134.1| ribonuclease III [Staphylococcus lugdunensis M23590]
gi|339894864|emb|CCB54161.1| putative ribonuclease III [Staphylococcus lugdunensis N920143]
gi|374841648|gb|EHS05109.1| ribonuclease III [Staphylococcus lugdunensis VCU139]
gi|410876890|gb|EKS24787.1| ribonuclease 3 [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 243
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 12/146 (8%)
Query: 27 ANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGIL 79
AN ++ + F E ++G F +I L ++A +HSSF E+N L L
Sbjct: 2 ANVKKDEMIKDFRQRFEQKMNELGIHFDNIKLYQQAFSHSSFINDFNMNRLEHNERLEFL 61
Query: 80 GGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPK 136
G V++ +VS L +K ++ +L + + T E S + + L +++ + K
Sbjct: 62 GDAVLEVTVSRYLFDKHPNLPEGNLTK-MRATIVCEPSLVIFANKIQLNQLILLGKGEEK 120
Query: 137 TNS-TVPAVVCGAFRAIFGAIAVDTG 161
T T P+++ AF A GA+ +D G
Sbjct: 121 TGGRTRPSLISDAFEAFVGALYLDQG 146
>gi|329120775|ref|ZP_08249436.1| ribonuclease III [Neisseria bacilliformis ATCC BAA-1200]
gi|327460145|gb|EGF06483.1| ribonuclease III [Neisseria bacilliformis ATCC BAA-1200]
Length = 316
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 36 SPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNK 95
SP A+ LQ IG+TF LL RA+TH SFS +N +G +++ +V+ L +
Sbjct: 78 SPRDAAVRRLQAAIGHTFADPALLDRALTHRSFSSRHNERFEFVGDAILNYTVARMLFDA 137
Query: 96 DIDISPKDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNS-TVPAVVCG 147
+ L+R V++T E + A+ D + LG ++ K+ P+++
Sbjct: 138 YPQLPEGRLSRLRANLVNQTVLAETAAALNIGDALLLGAGEL-----KSGGFRRPSILAD 192
Query: 148 AFRAIFGAIA 157
A A+F A++
Sbjct: 193 AMEAVFAAVS 202
>gi|387892267|ref|YP_006322564.1| ribonuclease III [Pseudomonas fluorescens A506]
gi|423690145|ref|ZP_17664665.1| ribonuclease III [Pseudomonas fluorescens SS101]
gi|447915453|ref|YP_007396021.1| ribonuclease III [Pseudomonas poae RE*1-1-14]
gi|387161990|gb|AFJ57189.1| ribonuclease III [Pseudomonas fluorescens A506]
gi|388001192|gb|EIK62521.1| ribonuclease III [Pseudomonas fluorescens SS101]
gi|445199316|gb|AGE24525.1| ribonuclease III [Pseudomonas poae RE*1-1-14]
Length = 229
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ + L +
Sbjct: 4 SLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFAAGEALFERFPQAR 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
L+R + E + AV GL + +R+ + +++ A A+ GAI
Sbjct: 64 EGQLSRLRARLVKGE-TLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122
Query: 157 AVDTG 161
+D G
Sbjct: 123 YLDAG 127
>gi|372489094|ref|YP_005028659.1| ribonuclease III [Dechlorosoma suillum PS]
gi|359355647|gb|AEV26818.1| ribonuclease III [Dechlorosoma suillum PS]
Length = 230
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 47 KQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNR 106
+++G+ F LLR A+TH S S +N L LG +++ V+ L + + DL+R
Sbjct: 16 RRLGHEFADPSLLRTALTHRSHSSPHNERLEFLGDSILNCVVAHLLFERFPLLPEGDLSR 75
Query: 107 -RVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGAIAVDTG 161
R + + G+ LG Q +R+ T P+++ A A+FGA+ +D G
Sbjct: 76 LRANLVKKDTLHELALGLDLGEQ--LRLGEGELKSGGHTRPSILADALEALFGAVYLDAG 133
>gi|229828999|ref|ZP_04455068.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM
14600]
gi|229792162|gb|EEP28276.1| hypothetical protein GCWU000342_01084 [Shuttleworthia satelles DSM
14600]
Length = 230
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNK 95
ETL+ +IGY F+ LLR+A+THSSF+ E +N L LG V++ VS L
Sbjct: 4 ETLEAKIGYQFQDKSLLRQALTHSSFANERHMKAHSDNERLEFLGDAVLEV-VSSEFLYL 62
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRA 151
+ P+ + + E + A+ +GL +R++ + + +++ A A
Sbjct: 63 NYPDLPEGRLTPLRASLVCEPTLAIAAREIGLGACLRLARGEDQSGGRERDSILSDALEA 122
Query: 152 IFGAIAVDTG 161
+ GA+ +D G
Sbjct: 123 VIGAVFLDGG 132
>gi|428218705|ref|YP_007103170.1| RNAse III [Pseudanabaena sp. PCC 7367]
gi|427990487|gb|AFY70742.1| RNAse III [Pseudanabaena sp. PCC 7367]
Length = 221
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 13/120 (10%)
Query: 53 FKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNR 106
FK LL +A+TH+S++ E NN+ L LG V+D V L + ++ +L R
Sbjct: 10 FKDPQLLEQALTHTSYAYENNLVAVNNQRLEFLGDAVVDFVVGEMLYHCYAQMAEGELTR 69
Query: 107 R----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
R V ET+ ++ ++ G L L K +S S P+++ AF A+ GA +D+G
Sbjct: 70 RRSMLVDETNLARLANQINLGEKLKLGKGTDLSGGRRS--PSILSDAFEAVIGAYYLDSG 127
>gi|317057716|ref|YP_004106183.1| ribonuclease III [Ruminococcus albus 7]
gi|315449985|gb|ADU23549.1| ribonuclease III [Ruminococcus albus 7]
Length = 232
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN------NRALGILGGYVIDTSVSLRLLNK 95
LE QK+IGY FK+ LL A++HSSF+ EN N L LG V+ VS +
Sbjct: 7 LEAFQKKIGYHFKNEKLLYEALSHSSFANENKKQRHSNERLEFLGDSVLSIVVSDHIFEH 66
Query: 96 DIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFR 150
+ +L + V E + E S ++ G ++ L K ++ ++V A
Sbjct: 67 FKHLPEGELTKLRASLVCEKALFEFSHKIELGKYIFLGKGEELT--GGRERASIVSDAME 124
Query: 151 AIFGAIAVDTG 161
A+ AI +D G
Sbjct: 125 AVIAAIYLDGG 135
>gi|170744647|ref|YP_001773302.1| ribonuclease III [Methylobacterium sp. 4-46]
gi|168198921|gb|ACA20868.1| Ribonuclease III [Methylobacterium sp. 4-46]
Length = 244
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSS--FSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
L L+ +IG+ F LL RA+TH S EE+ + L LG V+ +V+ LL
Sbjct: 16 LSALEGRIGHAFDDKDLLARALTHVSAGAGEESYQRLEFLGDRVLGLAVAEGLLRALPGA 75
Query: 100 SPKDLNRRVSETSNVEISCAVD-----GMHLGL-QKVVRVSPKTNSTVPAVVCGAFRAIF 153
DL+RR+S E AV G HL L V + N + A VC AI
Sbjct: 76 DEGDLSRRLSGLVRRESCAAVAQAWEVGPHLRLGAGEVHGGGRRNPAILADVC---EAIL 132
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 133 GAIFLDAG 140
>gi|407795767|ref|ZP_11142725.1| ribonuclease III [Salimicrobium sp. MJ3]
gi|407020108|gb|EKE32822.1| ribonuclease III [Salimicrobium sp. MJ3]
Length = 227
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 20/132 (15%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
LQKQ+ F + LL +A THSS+ E +N L LG V++ VS L K
Sbjct: 7 LQKQMNVRFSDVKLLEQAFTHSSYVNEHRHTERKDNERLEFLGDAVLELGVSQYLYRKYP 66
Query: 98 DISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAF 149
++ DL + V E S V+ + L Q+ V + T PA++ F
Sbjct: 67 NMEEGDLTKLRASIVCEASLVDFAND-----LNFQEYVLLGKGEEMTGGRHRPALLADVF 121
Query: 150 RAIFGAIAVDTG 161
A GA+ +D G
Sbjct: 122 EAFIGALYLDQG 133
>gi|388471204|ref|ZP_10145413.1| ribonuclease III [Pseudomonas synxantha BG33R]
gi|388007901|gb|EIK69167.1| ribonuclease III [Pseudomonas synxantha BG33R]
Length = 229
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ + L +
Sbjct: 4 SLSRLERQLGYTFKDPELMVLALTHRSFAGRNNERLEFLGDAILNFAAGEALFERFPQAR 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
L+R + E + AV GL + +R+ + +++ A A+ GAI
Sbjct: 64 EGQLSRLRARLVKGE-TLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122
Query: 157 AVDTG 161
+D G
Sbjct: 123 YLDAG 127
>gi|126728500|ref|ZP_01744316.1| Ribonuclease III [Sagittula stellata E-37]
gi|126711465|gb|EBA10515.1| Ribonuclease III [Sagittula stellata E-37]
Length = 225
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 9/141 (6%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS---EENNRALGILGGYVIDTSVSLRLLNKDID 98
++ L+ ++G+TF+ LLRRA+TH+S S E+N+ L LG V+ ++ LL D +
Sbjct: 7 IKALEDKLGHTFRDKALLRRAVTHASMSGPGREDNQRLEFLGDRVLGLVMAEALLAHDRN 66
Query: 99 ISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFG 154
S L R + E +CA +G+ +++ + A++ A A+
Sbjct: 67 ASEGLLAPRFNALVRKE-TCAEVARTIGVGDALKLGRSEQMSGGRRKQALLGDAMEAVIA 125
Query: 155 AIAVDTGKCDDAGDVFLRVHS 175
A+ +D G D A D+ LR+ +
Sbjct: 126 AVYLDGG-FDVAQDMILRLWA 145
>gi|65321177|ref|ZP_00394136.1| COG0571: dsRNA-specific ribonuclease [Bacillus anthracis str.
A2012]
gi|118479071|ref|YP_896222.1| ribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|118418296|gb|ABK86715.1| RNAse III [Bacillus thuringiensis str. Al Hakam]
Length = 262
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 22/168 (13%)
Query: 9 YLLPVLVIAISSSFQVRAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF 68
+L +L + + R +++++T + A + Q++IG TF LL +A THSS+
Sbjct: 5 FLAGLLGLYLEGPMPYRKYREKKYETK--YREAFKLFQEKIGITFTDEKLLIQAFTHSSY 62
Query: 69 -------SEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEIS 117
E+N L LG V++ +VS L K +S +L + V E S V +
Sbjct: 63 VNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFA 122
Query: 118 CAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDTG 161
L +V + T PA++ F A GA+ +D G
Sbjct: 123 N-----ELSFGSLVLLGKGEEMTGGRERPALLADVFEAFIGALYLDQG 165
>gi|451936545|ref|YP_007460399.1| ribonuclease III [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
gi|451777468|gb|AGF48443.1| ribonuclease III [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
Length = 241
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L++ + Y F +I LL A+TH S +N L LG V++ ++++ L K DI L
Sbjct: 6 LERSLDYKFSNINLLELALTHRSNGSPHNERLEFLGDSVLNFAITIFLFEKYADIDEGGL 65
Query: 105 NR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGAIAVD 159
+R R S + S A+ L L K +++ P+++ A+FGAI D
Sbjct: 66 SRLRASLVQ--QNSLAIIASDLNLSKYLKLGEGELKSGGCNRPSILADCLEAVFGAIFKD 123
Query: 160 T 160
+
Sbjct: 124 S 124
>gi|254418789|ref|ZP_05032513.1| ribonuclease III [Brevundimonas sp. BAL3]
gi|196184966|gb|EDX79942.1| ribonuclease III [Brevundimonas sp. BAL3]
Length = 236
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 20/139 (14%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSE---------ENNRALGILGGYVIDTSVS 89
A A+ LQ +IG+ F+ LL RA+TH+S E +N L LG V+ V+
Sbjct: 6 AEAVAALQTRIGHAFRDAALLERALTHASVGEGAPVGVHGPRDNERLEFLGDRVLGLLVA 65
Query: 90 LRLLNKDIDISPKDLNRRVSETSNV---EISCAVDGMHLGLQKVVRVSPKTNST----VP 142
+ L++D P ++S + + + +CA G LG+ +R+SP T
Sbjct: 66 EK-LSRDY---PTANEGQLSSSLHALVDKTACARVGEALGVGAALRLSPGETKTGGRRKA 121
Query: 143 AVVCGAFRAIFGAIAVDTG 161
V+ A AI A+ +D G
Sbjct: 122 GVIADAVEAILAAVYLDGG 140
>gi|291278588|ref|YP_003495423.1| ribonuclease III [Deferribacter desulfuricans SSM1]
gi|290753290|dbj|BAI79667.1| ribonuclease III [Deferribacter desulfuricans SSM1]
Length = 231
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-----NNRALGILGGYVIDTSVSLRLLNKD 96
+E L++ IGY FK+ LL A+THSS++ E N L LG V+ V+ L+ K
Sbjct: 4 IEELEELIGYRFKNKSLLLEALTHSSYAYEKKLKRNYERLEFLGDSVLQLIVTEYLVIKY 63
Query: 97 IDISPKDLNRR----VSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
+ L++ VSE EI+ + D + LG ++V T P+++ F
Sbjct: 64 KEFKEGVLSKYRSFFVSEDIISEIALKIRLNDFLMLGKGEIVS----GGYTKPSILADIF 119
Query: 150 RAIFGAIAVDTG 161
++ GA+ +D G
Sbjct: 120 ESLLGAVYLDGG 131
>gi|254448879|ref|ZP_05062335.1| ribonuclease III [gamma proteobacterium HTCC5015]
gi|198261569|gb|EDY85858.1| ribonuclease III [gamma proteobacterium HTCC5015]
Length = 225
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L TLQ + YTF + LL A+TH S S+ NN L LG +++ +V+ L + +
Sbjct: 2 LSTLQSTLNYTFSNGDLLEVAVTHRSASKTNNERLEFLGDSILNFTVAAELFERFPERPE 61
Query: 102 KDLNR-RVSETSNVEISCAVDGMHLG-LQKVVRVSPKTNST-VPAVVCGAFRAIFGAIAV 158
DL+R R S ++ M LG K+ K+ +++ A AI GAI +
Sbjct: 62 GDLSRLRASLVDKSSLAAHAKKMDLGPFLKLGGGELKSGGWRRDSILADAVEAIIGAIYL 121
Query: 159 DTG 161
D G
Sbjct: 122 DGG 124
>gi|291277478|ref|YP_003517250.1| ribonuclease III [Helicobacter mustelae 12198]
gi|290964672|emb|CBG40527.1| ribonuclease III [Helicobacter mustelae 12198]
Length = 223
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 69/135 (51%), Gaps = 11/135 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSF-SEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+ L+K I Y FK+ LL A+TH S +++NN L LG V+D + L + +
Sbjct: 1 MRNLEKAINYHFKNQDLLLTALTHKSCKNKKNNERLEYLGDAVLDLLIGEFLYQEFPEHK 60
Query: 101 PKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFG 154
DL++ V+E S + + A+ HL ++ + +TN P+++ AF A+ G
Sbjct: 61 EGDLSKMRAALVNEQSFMRFAKAI---HLQDFILISSNEETNQGREKPSILSSAFEALIG 117
Query: 155 AIAVDTGKCDDAGDV 169
A+ ++ G + A D+
Sbjct: 118 AVYLEAG-LERAKDI 131
>gi|154173754|ref|YP_001409228.1| ribonuclease III [Campylobacter curvus 525.92]
gi|402546497|ref|ZP_10843372.1| ribonuclease III [Campylobacter sp. FOBRC14]
gi|189043298|sp|A7H186.1|RNC_CAMC5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|112803490|gb|EAU00834.1| ribonuclease III [Campylobacter curvus 525.92]
gi|401017310|gb|EJP76071.1| ribonuclease III [Campylobacter sp. FOBRC14]
Length = 223
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE LQK +GY F++ LL A+TH S +N L LG V+D V L K +
Sbjct: 4 LENLQKLLGYEFENTKLLNEALTHKSTKLPYSNERLEFLGDAVMDLIVGEYLFKKFSKTN 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS-PKTNS---TVPAVVCGAFRAIFGAI 156
D+++ + N E S A HL + + + +S + N+ +++ AF A+ GA+
Sbjct: 64 EGDMSKLRAALVN-EKSFANMARHLQIGEFIHLSTAEANNGGREKASLLSDAFEAVMGAV 122
Query: 157 AVDTGKCDDAGDVFLRV 173
++ G D ++ +R+
Sbjct: 123 YLEAG-LDKVREIAVRL 138
>gi|442609958|ref|ZP_21024686.1| Ribonuclease III [Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441748550|emb|CCQ10748.1| Ribonuclease III [Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 225
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
++ L +IGYTF S LL +AMTH SF ++N L LG ++ ++ L +K
Sbjct: 5 VKELYNKIGYTFTSPELLEQAMTHRSFKGQHNERLEFLGDSILSFVIANALFHKFPKARE 64
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
DL+R S + + A G+ L +R+ P + + + A AI GA+
Sbjct: 65 GDLSRMRSTLVRGQ-TLAEFGVEFNLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAVF 123
Query: 158 VDT 160
+D+
Sbjct: 124 LDS 126
>gi|294668882|ref|ZP_06733972.1| ribonuclease III [Neisseria elongata subsp. glycolytica ATCC 29315]
gi|291309179|gb|EFE50422.1| ribonuclease III [Neisseria elongata subsp. glycolytica ATCC 29315]
Length = 233
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 66/126 (52%), Gaps = 11/126 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
++ +Q+++ Y FK LL RA+TH S+S +N +G +++ +++ L + +D+
Sbjct: 1 MQHIQQKLQYRFKQPELLTRALTHRSYSSRHNERFEFVGDAILNYTIAKMLYDTFLDLPE 60
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
L+R V++ + EI+ + D + LG ++ + P+++ A A+F
Sbjct: 61 GRLSRLRANLVNQDTLAEIATELKVGDALLLGNGELKSGGFRR----PSILSDAMEAMFA 116
Query: 155 AIAVDT 160
A++ DT
Sbjct: 117 AVSFDT 122
>gi|428224460|ref|YP_007108557.1| RNAse III [Geitlerinema sp. PCC 7407]
gi|427984361|gb|AFY65505.1| RNAse III [Geitlerinema sp. PCC 7407]
Length = 231
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 57 GLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRR--- 107
GLLRRA+TH S+ E +N L LG V+ V L + + ++ RR
Sbjct: 14 GLLRRALTHRSYVNEHPEAGDDNERLEFLGDAVLGFLVGALLYRRYPTMPEGEMTRRRSM 73
Query: 108 -VSETSNVEISCAVD-GMHLGLQK-VVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
V +T +++ A+D G HL L + V + + N P+++ AF A+ GA +D+G
Sbjct: 74 LVDQTQLAKVAIALDLGNHLRLGRGVAKADGRQN---PSLLSSAFEAVIGAYFLDSG 127
>gi|359437628|ref|ZP_09227685.1| ribonuclease III [Pseudoalteromonas sp. BSi20311]
gi|358027670|dbj|GAA63934.1| ribonuclease III [Pseudoalteromonas sp. BSi20311]
Length = 225
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L K+IGYTF GLL +AMTH S ++N L LG ++ ++ L K DL
Sbjct: 8 LYKRIGYTFADQGLLEQAMTHRSHKGQHNERLEFLGDSILSFVIANALYAKFPKAREGDL 67
Query: 105 NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDT 160
+R S + + A G+ L +R+ P + + + A AI GA+ +D+
Sbjct: 68 SRMRSTLVRGQ-TLAEFGLEFELGDYLRLGPGELKSGGFRRESTLADAVEAIIGAVFLDS 126
Query: 161 GKCDDAGDVFL 171
D G++ L
Sbjct: 127 -NIDRCGELIL 136
>gi|295094866|emb|CBK83957.1| RNAse III [Coprococcus sp. ART55/1]
Length = 229
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSLRLLNKDI 97
L+K+IGY FK I LL A+TH+SF+ E+ L LG +++ VS L K
Sbjct: 8 LEKRIGYEFKDIRLLITALTHTSFANELKVNKTESYERLEFLGDAILEYIVSDYLFRKKR 67
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAI 152
+ L + R S +S + LG K V +S T +++C F ++
Sbjct: 68 EYEEGKLTKLRASLVCEFTLSQISES--LGYGKFVLLSKGEAQTGGRTRKSILCDLFESV 125
Query: 153 FGAIAVDTG 161
GA+ +D G
Sbjct: 126 LGAMYLDGG 134
>gi|170695422|ref|ZP_02886567.1| Ribonuclease III [Burkholderia graminis C4D1M]
gi|170139613|gb|EDT07796.1| Ribonuclease III [Burkholderia graminis C4D1M]
Length = 421
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 12/137 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 6 LESRLRYEFRNAELLRQALTHRSHSSTHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDL 65
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ +G+ LG ++ P+++ A+ GA+
Sbjct: 66 SRVRANLVKQQSLYEIAQALNISEGLRLGEGELR----SGGFRRPSILADTLEAVLGAVF 121
Query: 158 VDTGKCDDAGDVFLRVH 174
+D G D A V R++
Sbjct: 122 LDGG-FDAAQTVIKRLY 137
>gi|217977175|ref|YP_002361322.1| Ribonuclease III [Methylocella silvestris BL2]
gi|254807894|sp|B8EK13.1|RNC_METSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|217502551|gb|ACK49960.1| Ribonuclease III [Methylocella silvestris BL2]
Length = 235
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENN---RALGILGGYVIDTSVSLRLLNK 95
A L L+ +IG+ F + L+ A+TH S ++ + L LG V+ V+ L
Sbjct: 4 APDLSALEARIGHRFSAADLIEAALTHVSAAQGKRVSYQRLEFLGDRVLGVVVANMLYGA 63
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRV--SPKTNSTVPAVVCGAF-RAI 152
D +L+RR+++ E SCA + G++ VRV S K N++V + G +I
Sbjct: 64 FPDADEGELSRRLADLVRKE-SCAEVALEWGVEAYVRVGESEKQNASVNRAILGDVCESI 122
Query: 153 FGAIAVDTG 161
GA+ +D G
Sbjct: 123 IGAVFLDGG 131
>gi|260576288|ref|ZP_05844280.1| ribonuclease III [Rhodobacter sp. SW2]
gi|259021556|gb|EEW24860.1| ribonuclease III [Rhodobacter sp. SW2]
Length = 231
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE---NNRALGILGGYVIDTSVSLRLLN 94
+ L+ +IG+ F+ LL RA+THSS S + +N+ L LG V+ ++ LL
Sbjct: 3 LSAELQAFCGRIGHVFRQPELLLRAVTHSSISSKTRPDNQRLEFLGDRVLGLVMAEALLT 62
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFR 150
D S L R + E +CA LGL +V+++ A++ A
Sbjct: 63 ADTAASEGQLAPRFNALVRKE-ACADVARDLGLGEVMKLGRSEMMSGGRRKDALLGDALE 121
Query: 151 AIFGAIAVDTGKCDDAGDVFLRVHSGEVG 179
A+ A+ +D+G D A + LR+ G +G
Sbjct: 122 AVIAAVYLDSG-FDAARGLVLRLWGGRIG 149
>gi|386285114|ref|ZP_10062332.1| ribonuclease III [Sulfurovum sp. AR]
gi|385343967|gb|EIF50685.1| ribonuclease III [Sulfurovum sp. AR]
Length = 223
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
L++++ YTFK+ L+ A+TH S+ + NN L LG V+D V L +K + +
Sbjct: 7 LEERLNYTFKNKQLIIEALTHKSYKKPYNNERLEFLGDAVLDLIVGEYLFSKFPNSNEGI 66
Query: 104 LNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIAVDT 160
L++ R S + + + LG + ++ + N+ P+++ AF AI GAI ++
Sbjct: 67 LSKIRASLVNESGFTLLARKLDLGSYIYLSLAEENNNGRNKPSLLSNAFEAIIGAIYLEA 126
Query: 161 G 161
G
Sbjct: 127 G 127
>gi|223043742|ref|ZP_03613785.1| ribonuclease III [Staphylococcus capitis SK14]
gi|417907072|ref|ZP_12550848.1| ribonuclease III [Staphylococcus capitis VCU116]
gi|222442839|gb|EEE48941.1| ribonuclease III [Staphylococcus capitis SK14]
gi|341596703|gb|EGS39294.1| ribonuclease III [Staphylococcus capitis VCU116]
Length = 245
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 27 ANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGIL 79
AN ++ + F + G+ F +I L ++A +HSSF + +N L L
Sbjct: 2 ANHKKREMVKEFQQKFTNKMNEWGFNFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFL 61
Query: 80 GGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSP 135
G V++ +VS L +K + +L + V E S V + +D L L + +
Sbjct: 62 GDAVLELTVSRYLFDKHPHLPEGNLTKMRATIVCEPSLVIFANKIDLNELIL--LGKGEE 119
Query: 136 KTNS-TVPAVVCGAFRAIFGAIAVDTG 161
KT T P+++ AF A GA+ +D G
Sbjct: 120 KTGGRTRPSLISDAFEAFVGALYLDQG 146
>gi|406992829|gb|EKE12110.1| hypothetical protein ACD_14C00014G0001 [uncultured bacterium]
Length = 227
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
+E+L K+IG FK+I LLR+A+TH S+ EN N L LG V++ ++ L N
Sbjct: 2 IESLAKKIGVKFKNIELLRQAVTHRSYLNENRDYALNHNERLEFLGDAVLELIITEYLYN 61
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS----PKTNSTVPAVVCGAFR 150
+ +L S N E+ V +G++K + +S T ++ A
Sbjct: 62 -NYKNPEGELTSWRSALVNGEMLAHV-ASEIGVEKFLLMSRGEAKDTGRARQYLLANALE 119
Query: 151 AIFGAIAVDTG 161
AI GA +D G
Sbjct: 120 AIIGATYLDQG 130
>gi|359453126|ref|ZP_09242450.1| ribonuclease III [Pseudoalteromonas sp. BSi20495]
gi|414071304|ref|ZP_11407275.1| ribonuclease III [Pseudoalteromonas sp. Bsw20308]
gi|358049757|dbj|GAA78699.1| ribonuclease III [Pseudoalteromonas sp. BSi20495]
gi|410806268|gb|EKS12263.1| ribonuclease III [Pseudoalteromonas sp. Bsw20308]
Length = 225
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L +IGY F GLL +AMTH S ++N L LG ++ ++ L K DL
Sbjct: 8 LYDKIGYVFTDQGLLEQAMTHRSHKGQHNERLEFLGDSILSFVIANALYAKFPKAREGDL 67
Query: 105 NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDT 160
+R S + + A G+ GL +R+ P + + + A AI GA +D+
Sbjct: 68 SRMRSTLVRGQ-TLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAAFLDS 126
Query: 161 GKCDDAGDVFL 171
G D G++ L
Sbjct: 127 G-IDRCGELIL 136
>gi|406997819|gb|EKE15836.1| hypothetical protein ACD_11C00103G0038 [uncultured bacterium]
Length = 227
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
+E+L K+IG FK I LL++A+TH S+ EN N L LG V++ +V+ L
Sbjct: 2 IESLSKKIGVKFKEISLLQQAVTHRSYLNENRGYKLDHNERLEFLGDAVLELAVTEYLYG 61
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS----PKTNSTVPAVVCGAFR 150
K + + + R S N E+ ++ LG+++ + +S T ++ +
Sbjct: 62 KFSNPEGELTSWRAS-LVNGEMLASI-AKELGVEEFLLMSKGEAKDTGRARQYLLANSIE 119
Query: 151 AIFGAIAVDTG 161
AI GAI +D G
Sbjct: 120 AIIGAIYLDQG 130
>gi|390575927|ref|ZP_10256007.1| ribonuclease III [Burkholderia terrae BS001]
gi|389932068|gb|EIM94116.1| ribonuclease III [Burkholderia terrae BS001]
Length = 426
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSPLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + S EI+ A+ + + LG ++ P+++ AI G
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALNISESLRLGEGELR----SGGFRRPSILADTLEAILG 118
Query: 155 AIAVDTG 161
AI +D+G
Sbjct: 119 AIFLDSG 125
>gi|315127397|ref|YP_004069400.1| RNase III, ds RNA [Pseudoalteromonas sp. SM9913]
gi|359445973|ref|ZP_09235683.1| ribonuclease III [Pseudoalteromonas sp. BSi20439]
gi|392553972|ref|ZP_10301109.1| RNase III, ds RNA [Pseudoalteromonas undina NCIMB 2128]
gi|315015911|gb|ADT69249.1| RNase III, ds RNA [Pseudoalteromonas sp. SM9913]
gi|358040171|dbj|GAA71932.1| ribonuclease III [Pseudoalteromonas sp. BSi20439]
Length = 225
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L K+IGYTF GLL +AMTH S ++N L LG ++ ++ L K DL
Sbjct: 8 LYKRIGYTFADQGLLEQAMTHRSHKGQHNERLEFLGDSILSFVIANALYAKFPKAREGDL 67
Query: 105 NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDT 160
+R S + + A G+ L +R+ P + + + A AI GA+ +D+
Sbjct: 68 SRMRSTLVRGQ-TLAEFGLEFELGDYLRLGPGELKSGGFRRESTLADAVEAIIGAVFLDS 126
Query: 161 GKCDDAGDVFL 171
D G++ L
Sbjct: 127 -DIDRCGELIL 136
>gi|298711900|emb|CBJ48587.1| dicer-like 3 [Ectocarpus siliculosus]
Length = 1557
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 26/160 (16%)
Query: 33 KTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFS----------EENNRALGILGGY 82
K S+ + L+K++GYTF+ L +A+TH S++ ++ + L LG
Sbjct: 1312 KPSARLMGNIRLLEKRLGYTFRYPWLCMQAITHPSWTINDIPPGTVPAQDYQRLEFLGDA 1371
Query: 83 VIDTSVSLRLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKT---- 137
V+ V+ L +P +L R +V+ + S V + L + V+R SPK
Sbjct: 1372 VLGWMVTAHLYFASSAFTPAELTRIKVTSSCVCNASLWVIALRLDVHHVLRASPKILGHI 1431
Query: 138 -----------NSTVPAVVCGAFRAIFGAIAVDTGKCDDA 166
T P A+ GA+ +D+ C +A
Sbjct: 1432 HAFIENNGVSGTGTAPKHPADVLEALIGAVFIDSSCCMNA 1471
>gi|375008162|ref|YP_004981795.1| ribonuclease 3 [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359287011|gb|AEV18695.1| Ribonuclease 3 [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 246
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-------EENNRALGILGGYVIDTSVSLRLLN 94
+ LQ +IG TF++ LL +A THSS+ E+N L LG V++ +VS L
Sbjct: 18 FQELQNKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQ 77
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
K +S L + V E S V+ + A+ G + L K ++ T PA++ F
Sbjct: 78 KFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELT--GGRTRPALLADVF 135
Query: 150 RAIFGAIAVDTG 161
A GA+ +D G
Sbjct: 136 EAFIGALYLDQG 147
>gi|374334746|ref|YP_005091433.1| ribonuclease III [Oceanimonas sp. GK1]
gi|372984433|gb|AEY00683.1| ribonuclease III [Oceanimonas sp. GK1]
Length = 222
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L LQKQ+G+TF LL RA+TH S +N L LG ++ ++ L ++ ++
Sbjct: 4 LNNLQKQLGHTFNDEALLVRALTHRSAGSRHNERLEFLGDSILSMVIADALFHRFPKVNE 63
Query: 102 KDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
D++R V E + E++ A + L + + + P + +++ A A+
Sbjct: 64 GDMSRMRATLVREKTLAELARAFE-----LGEYLILGPGELKSGGYRRESILADAVEALI 118
Query: 154 GAIAVDTG 161
GAI +D+G
Sbjct: 119 GAIYLDSG 126
>gi|325265700|ref|ZP_08132389.1| ribonuclease III [Kingella denitrificans ATCC 33394]
gi|324982831|gb|EGC18454.1| ribonuclease III [Kingella denitrificans ATCC 33394]
Length = 242
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
TA + LQ+++GYTF+ LL++A+TH S + NN L +G +++ V+ L + D+
Sbjct: 8 TARQQLQQRLGYTFRQPELLQQALTHRSAGKNNNERLEFVGDGIVNFVVAQMLYHAFPDL 67
Query: 100 SPKDLN----RRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGA 155
L+ V E + E++ + G+ L V P+++ A A+F A
Sbjct: 68 PEGRLSVLRTHLVKEAALAEMAREL-GVGAALTLGVGELKSGGHDRPSILADALEALFAA 126
Query: 156 IAVDT 160
I +D
Sbjct: 127 IRLDA 131
>gi|336437038|ref|ZP_08616747.1| ribonuclease III [Lachnospiraceae bacterium 1_4_56FAA]
gi|336006172|gb|EGN36208.1| ribonuclease III [Lachnospiraceae bacterium 1_4_56FAA]
Length = 236
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L+ L+ +IGY F+ + LL RA+ HSSF+ E N L LG V++ S L
Sbjct: 12 LKELEARIGYEFRDVSLLERALRHSSFTNEKRMPKQECNERLEFLGDAVLELVSSEFLFK 71
Query: 95 KDIDISPKDLNR-RVSETSNVEIS-CAVD---GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
+ +S +L + R S ++ CA D G +L L K + +V A
Sbjct: 72 EYPKVSEGELTKTRASMVCEPSLAFCARDIDLGKYLLLGKGEEATG--GRQRDSVTSDAM 129
Query: 150 RAIFGAIAVDTG 161
A+ GAI +D+G
Sbjct: 130 EALIGAIYLDSG 141
>gi|299067031|emb|CBJ38226.1| Ribonuclease III (RNase III) [Ralstonia solanacearum CMR15]
Length = 256
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+LE LQ+++ Y F LL++A+TH S + +N L LG +++ +V+ L +
Sbjct: 2 SLEALQQRLDYRFSKPELLQQALTHRSHNAMHNERLEFLGDSILNCAVADMLYGMFGKLD 61
Query: 101 PKDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
DL+R V + + EI+ + D + LG ++ P+++ A AIF
Sbjct: 62 EGDLSRVRANLVKQQALYEIAQMLLLPDELRLGEGEL----KSGGFRRPSILADALEAIF 117
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 118 GAVFLDGG 125
>gi|78485079|ref|YP_391004.1| ribonuclease III [Thiomicrospira crunogena XCL-2]
gi|78363365|gb|ABB41330.1| RNAse III [Thiomicrospira crunogena XCL-2]
Length = 233
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L K +GY +K+I L+RA+TH S +NN L LG +++ ++ L ++ IS
Sbjct: 10 LNRLSKSLGYQYKNIEFLQRALTHRSMGAKNNERLEFLGDSLVNFMIADALFHQFHKISE 69
Query: 102 KDLNR 106
DL+R
Sbjct: 70 GDLSR 74
>gi|167046026|gb|ABZ10544.1| dicer-like protein C [Placozoa sp. DMJ-2008]
Length = 352
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTSVSLRLL 93
A LE L+K IGY+F++ + RA+THSS+ N N+ L LG ++ ++
Sbjct: 179 ANNLERLEKVIGYSFQNKLFMIRALTHSSYHHHNIAIESNQKLEFLGDTILQYIIARHFF 238
Query: 94 NKDIDISPKDLNRRVSETSNVEISCAVD-GMHLGLQKVV-RVSP----KTNSTVPAVVC 146
N D P L+ + + V C D G+ +G+ K + + SP N V + C
Sbjct: 239 NSHPDAKPAKLHDF--QEAIVNNKCLADIGIAIGVSKYIFQESPDLFRDINQFVKIITC 295
>gi|119897933|ref|YP_933146.1| ribonuclease III [Azoarcus sp. BH72]
gi|119670346|emb|CAL94259.1| putative Ribonuclease III [Azoarcus sp. BH72]
Length = 223
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 15/129 (11%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
++E LQ+ +G+ F LL++A+TH SF + NN L LG +++ S+ L + +
Sbjct: 2 SVEHLQRALGHQFAQPELLQQALTHRSFGQPNNERLEFLGDSILNCVTSIALYERFGGLR 61
Query: 101 PKDLNRRVSETSNVEISCAVDGMH-----LGLQKVVRVSPKTNST----VPAVVCGAFRA 151
+L+R + C D +H L L +R+ + P+++ A A
Sbjct: 62 EGELSR-----LRAGLVCQ-DALHRIAVQLKLGDCLRLGEGELKSGGFRRPSILADALEA 115
Query: 152 IFGAIAVDT 160
IF A+ +D+
Sbjct: 116 IFAAVFLDS 124
>gi|197303071|ref|ZP_03168119.1| hypothetical protein RUMLAC_01798 [Ruminococcus lactaris ATCC
29176]
gi|197297926|gb|EDY32478.1| ribonuclease III [Ruminococcus lactaris ATCC 29176]
Length = 229
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L+ L+K+IGYTF++ LL RAM HSS++ E N L LG V++ S L
Sbjct: 5 LKELEKKIGYTFENHKLLERAMMHSSYTNEKHLEKYRCNERLEFLGDAVLELISSEYLFG 64
Query: 95 KDIDISPKDLNR-RVSETSNVEIS-CAVD---GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
+ +S +L + R S ++ CA D G +L L K + ++ A
Sbjct: 65 ELPRVSEGELTKTRASMVCEPSLAMCARDIDLGSYLLLGKGEEATG--GRMRDSITSDAM 122
Query: 150 RAIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 123 EALIGAIYLDGG 134
>gi|331082011|ref|ZP_08331139.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
gi|330405606|gb|EGG85136.1| ribonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
Length = 236
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFS-------EENNRALGILGGYVIDTSVSLRLLNKDI 97
L+K+IGY F++ LL A+THSS++ +ENN L LG V++ + S L +
Sbjct: 10 LEKKIGYEFENFDLLVNALTHSSYANEHHIAYKENNERLEFLGDAVLELTSSEFLFYQYA 69
Query: 98 DISPKDL-NRRVSETSNVEIS-CAVD---GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAI 152
D+ L +R S ++ CA + G +L L K + N +++ A A+
Sbjct: 70 DLPEGKLTKKRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGRNRN--SIISDAMEAL 127
Query: 153 FGAIAVDTG 161
GAI +D G
Sbjct: 128 IGAIYLDGG 136
>gi|239814409|ref|YP_002943319.1| ribonuclease III [Variovorax paradoxus S110]
gi|259646554|sp|C5CSF5.1|RNC_VARPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|239800986|gb|ACS18053.1| ribonuclease III [Variovorax paradoxus S110]
Length = 228
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L LQ+++ ++F LL+ A+TH SFS ++N L LG V++ +VS L + +
Sbjct: 5 LTALQERLKHSFSDTRLLQLALTHRSFSADHNERLEFLGDSVLNLAVSHLLYTRLSALPE 64
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGAIA 157
DL+ RV + + + L L ++R+ P+++ A A+ GA+
Sbjct: 65 GDLS-RVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIGAVY 123
Query: 158 VDTG 161
+D G
Sbjct: 124 LDAG 127
>gi|56419727|ref|YP_147045.1| ribonuclease III [Geobacillus kaustophilus HTA426]
gi|81347639|sp|Q5L0Q3.1|RNC_GEOKA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56379569|dbj|BAD75477.1| dsRNA-specific ribonuclease [Geobacillus kaustophilus HTA426]
Length = 246
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-------EENNRALGILGGYVIDTSVSLRLLN 94
+ LQ +IG TF++ LL +A THSS+ E+N L LG V++ +VS L
Sbjct: 18 FQELQNKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQ 77
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
K +S L + V E S V+ + A+ G + L K ++ T PA++ F
Sbjct: 78 KFPHMSEGQLTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELT--GGRTRPALLADVF 135
Query: 150 RAIFGAIAVDTG 161
A GA+ +D G
Sbjct: 136 EAFIGALYLDQG 147
>gi|402699492|ref|ZP_10847471.1| ribonuclease III [Pseudomonas fragi A22]
Length = 229
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+LE L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L ++
Sbjct: 4 SLERLERQLGYTFKDQELMILALTHRSFAGRNNERLEFLGDAILNFVAGEALFDRFPLAR 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGA 155
L+R R ++ G LG + +R+ + +++ A A+ GA
Sbjct: 64 EGQLSRLRARLVKGETLAVLARGFELG--EYLRLGSGELKSGGFRRESILADALEALIGA 121
Query: 156 IAVDTG 161
I +D G
Sbjct: 122 IYLDAG 127
>gi|395648702|ref|ZP_10436552.1| ribonuclease III [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 229
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 1 MSVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFP 60
Query: 98 DISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R + E + AV GL + +R+ + +++ A A+
Sbjct: 61 QAREGQLSRLRARLVKGE-TLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|229098318|ref|ZP_04229265.1| Ribonuclease 3 [Bacillus cereus Rock3-29]
gi|229104411|ref|ZP_04235080.1| Ribonuclease 3 [Bacillus cereus Rock3-28]
gi|229117335|ref|ZP_04246713.1| Ribonuclease 3 [Bacillus cereus Rock1-3]
gi|407706308|ref|YP_006829893.1| hypothetical protein MC28_3072 [Bacillus thuringiensis MC28]
gi|423378312|ref|ZP_17355596.1| ribonuclease 3 [Bacillus cereus BAG1O-2]
gi|423441420|ref|ZP_17418326.1| ribonuclease 3 [Bacillus cereus BAG4X2-1]
gi|423448354|ref|ZP_17425233.1| ribonuclease 3 [Bacillus cereus BAG5O-1]
gi|423464494|ref|ZP_17441262.1| ribonuclease 3 [Bacillus cereus BAG6O-1]
gi|423533836|ref|ZP_17510254.1| ribonuclease 3 [Bacillus cereus HuB2-9]
gi|423540895|ref|ZP_17517286.1| ribonuclease 3 [Bacillus cereus HuB4-10]
gi|423547133|ref|ZP_17523491.1| ribonuclease 3 [Bacillus cereus HuB5-5]
gi|423623075|ref|ZP_17598853.1| ribonuclease 3 [Bacillus cereus VD148]
gi|228666235|gb|EEL21699.1| Ribonuclease 3 [Bacillus cereus Rock1-3]
gi|228679109|gb|EEL33317.1| Ribonuclease 3 [Bacillus cereus Rock3-28]
gi|228685216|gb|EEL39147.1| Ribonuclease 3 [Bacillus cereus Rock3-29]
gi|401128948|gb|EJQ36631.1| ribonuclease 3 [Bacillus cereus BAG5O-1]
gi|401172083|gb|EJQ79304.1| ribonuclease 3 [Bacillus cereus HuB4-10]
gi|401178854|gb|EJQ86027.1| ribonuclease 3 [Bacillus cereus HuB5-5]
gi|401259848|gb|EJR66022.1| ribonuclease 3 [Bacillus cereus VD148]
gi|401636578|gb|EJS54332.1| ribonuclease 3 [Bacillus cereus BAG1O-2]
gi|402418081|gb|EJV50381.1| ribonuclease 3 [Bacillus cereus BAG4X2-1]
gi|402420761|gb|EJV53032.1| ribonuclease 3 [Bacillus cereus BAG6O-1]
gi|402464055|gb|EJV95755.1| ribonuclease 3 [Bacillus cereus HuB2-9]
gi|407383993|gb|AFU14494.1| Ribonuclease 3 [Bacillus thuringiensis MC28]
Length = 245
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALG 77
R +++++T + A + Q++IG TF LL +A THSS+ E+N L
Sbjct: 4 RKYREKKYETK--YREAFKVFQEKIGITFTDEKLLTQAFTHSSYVNEHRKKPHEDNERLE 61
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVR 132
LG V++ +VS L K +S +L + V E S V + + G + L K
Sbjct: 62 FLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEE 121
Query: 133 VSPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
++ PA++ F A GA+ +D G
Sbjct: 122 MT--GGRERPALLADVFEAFIGALYLDQG 148
>gi|88858204|ref|ZP_01132846.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2]
gi|88819821|gb|EAR29634.1| RNase III, dsRNA [Pseudoalteromonas tunicata D2]
Length = 225
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L +IGYTF ++ LL +AMTH S ++N L LG ++ ++ L + DL
Sbjct: 8 LYTKIGYTFNNVALLEQAMTHRSHKGQHNERLEFLGDSILSFVIANELYKRFPKSREGDL 67
Query: 105 NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDT 160
+R S + + A G+ L +R+ P + + + A AI GA+ +D+
Sbjct: 68 SRMRSTLVRGQ-TLAEFGLEFNLGDYLRLGPGELKSGGYRRESTLADAVEAIIGAVFLDS 126
Query: 161 G 161
G
Sbjct: 127 G 127
>gi|338738021|ref|YP_004674983.1| ribonuclease III [Hyphomicrobium sp. MC1]
gi|337758584|emb|CCB64409.1| ribonuclease III [Hyphomicrobium sp. MC1]
Length = 235
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 14/131 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSS-----FSEENNRALGILGGYVIDTSVSLRLLNKD 96
+ L+ ++GY FK GLL RA+TH+S + +N L +G V+ +++ L +
Sbjct: 7 FKELETKLGYKFKDPGLLERALTHASVRGGKVARSDNERLEFIGDRVLGLAIAEALNKQY 66
Query: 97 IDISPKDLNRRVSETSNVEISCA-----VD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFR 150
+ + +L RR + E +CA +D G+HL L + S N T ++ A
Sbjct: 67 PEANEGELARRYNRLVRGE-ACAKVARNIDLGVHLILSESEADSGGRNKTT--ILADAAE 123
Query: 151 AIFGAIAVDTG 161
A+ GA+ +D G
Sbjct: 124 ALLGAVFIDGG 134
>gi|336113778|ref|YP_004568545.1| ribonuclease III [Bacillus coagulans 2-6]
gi|335367208|gb|AEH53159.1| ribonuclease III [Bacillus coagulans 2-6]
Length = 246
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
LQ+Q+G F+ LL++A THSS+ E +N L LG V++ +VS L +
Sbjct: 19 LQEQLGIHFQDGNLLKQAFTHSSYVNEHPEKRRHDNERLEFLGDAVLELTVSHYLFKRFP 78
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFG 154
++ ++ + R S + + +H G ++ + T PA++ F A G
Sbjct: 79 SMNEGEMTKLRASVVCEPSLVIFANELHFGEYILLGKGEEMTGGRTRPALLADVFEAFIG 138
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 139 ALYLDKG 145
>gi|386389600|ref|ZP_10074414.1| ribonuclease III [Haemophilus paraphrohaemolyticus HK411]
gi|385695370|gb|EIG25932.1| ribonuclease III [Haemophilus paraphrohaemolyticus HK411]
Length = 222
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++GY F+++ L +A+TH S + +NN L LG +++ ++ L +K +
Sbjct: 3 LERLQKKLGYQFETLDYLTQALTHRSAASKNNERLEFLGDSILNFTIGKALFDKFPKANE 62
Query: 102 KDLNRRVSETSNVEISCAV--------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+ R+ T E + A+ D M LG ++ + S ++ AI
Sbjct: 63 GELS-RMRATLVREQTLAIIARQFDLGDYMKLGAGELKSGGYRRES----ILADCIEAII 117
Query: 154 GAIAVDTG 161
AI +D G
Sbjct: 118 AAIYLDKG 125
>gi|121610179|ref|YP_997986.1| ribonuclease III [Verminephrobacter eiseniae EF01-2]
gi|189043373|sp|A1WMW1.1|RNC_VEREI RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|121554819|gb|ABM58968.1| RNAse III [Verminephrobacter eiseniae EF01-2]
Length = 247
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 25/142 (17%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
LQ+++ + F GLL RA TH SFS E+N L LG V++ +VS LL + + P+
Sbjct: 7 ALQERLQHVFSDPGLLERATTHRSFSAEHNERLEFLGDSVLNLAVS-SLLYQRLSALPEG 65
Query: 104 LNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTV---------------------- 141
RV + S + L L + +R+ +
Sbjct: 66 ELSRVRANLVRQESLYQLALRLPLAQALRLGESLSGNRQRRSRRRCADELQPDEAGSGGL 125
Query: 142 --PAVVCGAFRAIFGAIAVDTG 161
P+++ A A+ GA+ +D G
Sbjct: 126 QHPSILADALEALIGAVYLDAG 147
>gi|429769972|ref|ZP_19302056.1| ribonuclease III [Brevundimonas diminuta 470-4]
gi|429185885|gb|EKY26855.1| ribonuclease III [Brevundimonas diminuta 470-4]
Length = 238
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSLR 91
A A+ L++++G+ FK LL A+THSS E +N L LG V+ V+ R
Sbjct: 10 AEAVAALRRRLGHDFKDSSLLEHALTHSSVGEGAGPQVPADNERLEFLGDRVLGLLVADR 69
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCG 147
L+ L+ R+ + + +CA G LG+ +R+SP T V+
Sbjct: 70 LVRDFPAADEGQLSARLHALVD-KSACARVGEALGVGDALRLSPGETKTGGRRKAGVIAD 128
Query: 148 AFRAIFGAIAVDTG 161
A AI A+ D G
Sbjct: 129 AVEAILAAVYRDGG 142
>gi|392950932|ref|ZP_10316487.1| ribonuclease III [Hydrocarboniphaga effusa AP103]
gi|391859894|gb|EIT70422.1| ribonuclease III [Hydrocarboniphaga effusa AP103]
Length = 228
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQK +GY F+ + LL RA+TH S + NN L LG +I+ + L L
Sbjct: 9 LQKALGYEFQDLALLDRAITHRSHAAANNERLEFLGDALINFVIGEYLFRMRPTAEEGAL 68
Query: 105 NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDT 160
+ R+ + E S AV L L +++ + +V+ F A+ GAI +D
Sbjct: 69 S-RLRASLVREPSLAVLARELKLGDAIKLGEGELKSGGWRRDSVLADTFEAVLGAIYLDG 127
Query: 161 GKCDDAGDVFLR 172
G + A +V LR
Sbjct: 128 G-FEVAKEVCLR 138
>gi|408483604|ref|ZP_11189823.1| ribonuclease III [Pseudomonas sp. R81]
Length = 229
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 1 MSVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFP 60
Query: 98 DISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R + E + AV GL + +R+ + +++ A A+
Sbjct: 61 QAREGQLSRLRARLVKGE-TLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|373494771|ref|ZP_09585370.1| ribonuclease III [Eubacterium infirmum F0142]
gi|371967815|gb|EHO85283.1| ribonuclease III [Eubacterium infirmum F0142]
Length = 225
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSS----FSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
++K+I Y FK LL A+THSS F++++N L +G +D + L + D S
Sbjct: 5 IEKKISYKFKDKNLLSTALTHSSYAGQFNKKSNERLEFIGDGFLDAVIGFDLFVRLTDNS 64
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSP----KTNSTVPAVVCGAFRAIFGAI 156
L++R ++ E S A G+ LG+ K + + ++ A AI GA+
Sbjct: 65 EGTLSKRRAQIVCSE-SLAEIGLKLGIDKEILLGNGEELNRGRCNKHIIADAVEAIIGAV 123
Query: 157 AVDTG 161
+D G
Sbjct: 124 YIDGG 128
>gi|347532247|ref|YP_004839010.1| ribonuclease III [Roseburia hominis A2-183]
gi|345502395|gb|AEN97078.1| ribonuclease III [Roseburia hominis A2-183]
Length = 232
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRL 92
+ L L++ IGY F LL++A+THSSF+ E +N L LG V++ S L
Sbjct: 2 SKLTELEQVIGYEFNEQRLLQQALTHSSFANEKHMKKLSDNERLEFLGDAVLEVVSSEFL 61
Query: 93 LNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGA 148
+ D+ DL ++ + E + A+ + L K + + N T +++ A
Sbjct: 62 YKEHTDLPEGDLT-KLRASIVCEPTLALCTREIDLGKYLYLGKGENLTGGRGRKSILSDA 120
Query: 149 FRAIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 121 LEAVIGAIYLDGG 133
>gi|260588638|ref|ZP_05854551.1| ribonuclease III [Blautia hansenii DSM 20583]
gi|260541113|gb|EEX21682.1| ribonuclease III [Blautia hansenii DSM 20583]
Length = 263
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFS-------EENNRALGILGGYVIDTSVSLRLLNKDI 97
L+K+IGY F++ LL A+THSS++ +ENN L LG V++ + S L +
Sbjct: 37 LEKKIGYEFENFDLLVNALTHSSYANEHHIAYKENNERLEFLGDAVLELTSSEFLFYQYA 96
Query: 98 DISPKDL-NRRVSETSNVEIS-CAVD---GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAI 152
D+ L +R S ++ CA + G +L L K + N +++ A A+
Sbjct: 97 DLPEGKLTKKRASIVCEPTLALCAKEISLGDYLLLGKGEEATGGRNRN--SIISDAMEAL 154
Query: 153 FGAIAVDTG 161
GAI +D G
Sbjct: 155 IGAIYLDGG 163
>gi|406946301|gb|EKD77552.1| hypothetical protein ACD_42C00297G0002 [uncultured bacterium]
Length = 223
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSE-ENNRALGILGGYVIDTSVSLRLLNKDID 98
T + LQ++I Y F+S LL A+TH S + +NN L LG ++ +S L ++
Sbjct: 2 TNFKALQEKINYHFQSEALLMHALTHRSKQKTKNNERLEFLGDSILSLIISTELFHRYEK 61
Query: 99 ISPKDLNRRVSETSNVEISCAV-------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRA 151
DL+R + E + D + LG+ ++ + S ++ GAF A
Sbjct: 62 SQEGDLSRLRAALVKGETIAKIASELGVGDHLRLGVGELKSGGHQRES----ILAGAFEA 117
Query: 152 IFGAIAVDT 160
I GAI D+
Sbjct: 118 IIGAIYCDS 126
>gi|386748059|ref|YP_006221267.1| ribonuclease III [Helicobacter cetorum MIT 99-5656]
gi|384554301|gb|AFI06057.1| ribonuclease III [Helicobacter cetorum MIT 99-5656]
Length = 234
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
ETL++ +GY+FK LL +A+TH S NN L LG V+D V L +K +
Sbjct: 14 ETLERALGYSFKDKRLLEQALTHKSCRLALNNERLEFLGDAVLDLIVGELLYHKFYQYNE 73
Query: 102 KDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L++ VSE +++ A+ L +RVS + P+++ AF A+
Sbjct: 74 GKLSKLRASIVSEQGFTKLAKAI-----SLHDYLRVSTSEEVSKGREKPSILSSAFEALM 128
Query: 154 GAIAVDTG 161
+ ++ G
Sbjct: 129 AGVYLEAG 136
>gi|225419776|ref|ZP_03762079.1| hypothetical protein CLOSTASPAR_06114 [Clostridium asparagiforme
DSM 15981]
gi|225041580|gb|EEG51826.1| hypothetical protein CLOSTASPAR_06114 [Clostridium asparagiforme
DSM 15981]
Length = 232
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L+ L++ I Y FK GL +A+THSS++ E+ N L LG V++ S L +
Sbjct: 5 LQELERTICYQFKEHGLFVQALTHSSYANEHRWNHSRCNERLEFLGDAVLEIVTSDFLYH 64
Query: 95 KDIDISPKDLNR-RVSETSNVEIS-CAVD---GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
K D+ DL + R S ++ CA D G +L L K + + +VV A
Sbjct: 65 KYEDLPEGDLTKIRASIVCEPTLAYCAGDISLGEYLLLGKGEEATG--GRSRNSVVSDAM 122
Query: 150 RAIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 123 EALIGAIYLDGG 134
>gi|337736966|ref|YP_004636413.1| ribonuclease III [Clostridium acetobutylicum DSM 1731]
gi|384458473|ref|YP_005670893.1| ribonuclease III [Clostridium acetobutylicum EA 2018]
gi|325509162|gb|ADZ20798.1| ribonuclease III [Clostridium acetobutylicum EA 2018]
gi|336292177|gb|AEI33311.1| ribonuclease III [Clostridium acetobutylicum DSM 1731]
Length = 230
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 19/149 (12%)
Query: 48 QIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTSVSLRLLNKDIDISPK 102
++G F++I LL A+THSS++ EN N L LG V+ S+S K IS
Sbjct: 13 KLGIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYPTISEG 72
Query: 103 DLNRRVSETSNVEISCAVD----GMHLGLQKVVRVSPKTN----STVPAVVCGAFRAIFG 154
+L ++ + C + G L K +R+S T +++ A+
Sbjct: 73 ELTKK-----RALVVCGISLHSIGERWQLGKYIRMSHGEELTGGRTRVSIIADCVEAVIA 127
Query: 155 AIAVDTGKCDDAGDVFLRVHSGEVGKALP 183
AI +D G D A + LR G + A+
Sbjct: 128 AIYLDKG-FDTAKNFILREFEGTIQNAVE 155
>gi|255019675|ref|ZP_05291754.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756]
gi|340783042|ref|YP_004749649.1| ribonuclease III [Acidithiobacillus caldus SM-1]
gi|254970898|gb|EET28381.1| Ribonuclease III [Acidithiobacillus caldus ATCC 51756]
gi|340557193|gb|AEK58947.1| Ribonuclease III [Acidithiobacillus caldus SM-1]
Length = 232
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+LE LQ+ IGY F+ LLR+A+TH S ++N L LG ++ V+ L + +S
Sbjct: 3 SLERLQQAIGYVFQDEVLLRQALTHRSAGAQHNERLEFLGDAALNFVVAAELYARFPKVS 62
Query: 101 PKDLNRR----VSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+R V E + +++ + D + LG ++ + +S + A AI
Sbjct: 63 EGNLSRMRARLVREETLAQVAGEIALADSLILGPGELRSGGARRDS----IRADALEAII 118
Query: 154 GAIAVDTG 161
GA +D G
Sbjct: 119 GAAYLDGG 126
>gi|94263438|ref|ZP_01287251.1| Ribonuclease III [delta proteobacterium MLMS-1]
gi|93456168|gb|EAT06307.1| Ribonuclease III [delta proteobacterium MLMS-1]
Length = 233
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 33 KTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDT 86
K S P A L + GY FK LL A+ HSS + E +N L LG V+
Sbjct: 3 KNSDPLAARLAAM----GYRFKRTSLLELALVHSSRAAEAGKGVSSNERLEFLGDAVLGL 58
Query: 87 SVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VP 142
+V+ L + DL+R + N E A L L + +R+ +T P
Sbjct: 59 AVAALLYEAHPTMPEGDLSRHRAALVNEE-HLAGMARQLALGEFIRLGRGEEATGGRDKP 117
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ F A+ GA+ +D G
Sbjct: 118 SILAATFEALVGAVYLDGG 136
>gi|220904300|ref|YP_002479612.1| ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans
str. ATCC 27774]
gi|219868599|gb|ACL48934.1| Ribonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans
str. ATCC 27774]
Length = 243
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 32 FKTSSPFAT--ALETLQKQIGYTFKSIGLLRRAMTHSSFS------EENNRALGILGGYV 83
F SS + + ALE ++KQ+G+ F LL A+THSS++ +E+N LG V
Sbjct: 4 FDASSEYTSSRALELVKKQLGHGFIRKDLLELALTHSSWANECGPGQEHNERQEFLGDAV 63
Query: 84 IDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST--- 140
++ VS L + +L + S + +S A +GL +++++ S
Sbjct: 64 LELCVSWELYRRFPSAREGELTKMRSSLVSA-VSLAERARDMGLDRLLKLGRGEESQGGR 122
Query: 141 -VPAVVCGAFRAIFGAIAVDTG 161
AV+ A A+ AI D G
Sbjct: 123 KRDAVLSDALEAVLAAIYEDGG 144
>gi|387772294|ref|ZP_10128246.1| ribonuclease III [Haemophilus parahaemolyticus HK385]
gi|386907029|gb|EIJ71746.1| ribonuclease III [Haemophilus parahaemolyticus HK385]
Length = 222
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++GY F+++ L +A+TH S + +NN L LG +++ ++ L +K +
Sbjct: 3 LERLQKKLGYQFETLDYLTQALTHRSAASKNNERLEFLGDSILNFTIGKALFDKFPKANE 62
Query: 102 KDLNRRVSETSNVEISCAV--------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+ R+ T E + A+ D M LG ++ + S ++ AI
Sbjct: 63 GELS-RMRATLVREQTLAIIARQFDLGDYMKLGAGELKSGGYRRES----ILADCVEAII 117
Query: 154 GAIAVDTG 161
AI +D G
Sbjct: 118 AAIYLDKG 125
>gi|239636288|ref|ZP_04677290.1| ribonuclease III [Staphylococcus warneri L37603]
gi|239597643|gb|EEQ80138.1| ribonuclease III [Staphylococcus warneri L37603]
Length = 243
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 12/125 (9%)
Query: 48 QIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
++G+ + +I L ++A +HSSF ++N L LG V++ +VS L +K D+
Sbjct: 23 ELGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLP 82
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVCGAFRAIFGAI 156
+L ++ T E S + + L +++ + KT T P+++ AF A GA+
Sbjct: 83 EGNLT-KMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGAL 141
Query: 157 AVDTG 161
+D G
Sbjct: 142 YLDQG 146
>gi|229031479|ref|ZP_04187479.1| Ribonuclease 3 [Bacillus cereus AH1271]
gi|228729768|gb|EEL80748.1| Ribonuclease 3 [Bacillus cereus AH1271]
Length = 245
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALG 77
R +++++T + A + Q++IG TF LL +A THSS+ E+N L
Sbjct: 4 RKHREKKYETK--YREAFKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLE 61
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVR 132
LG V++ +VS L K +S +L + V E S V + + G + L K
Sbjct: 62 FLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEE 121
Query: 133 VSPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
++ PA++ F A GA+ +D G
Sbjct: 122 MT--GGRERPALLADVFEAFIGALYLDQG 148
>gi|229174515|ref|ZP_04302047.1| Ribonuclease 3 [Bacillus cereus MM3]
gi|423401309|ref|ZP_17378482.1| ribonuclease 3 [Bacillus cereus BAG2X1-2]
gi|423457968|ref|ZP_17434765.1| ribonuclease 3 [Bacillus cereus BAG5X2-1]
gi|423477987|ref|ZP_17454702.1| ribonuclease 3 [Bacillus cereus BAG6X1-1]
gi|228609075|gb|EEK66365.1| Ribonuclease 3 [Bacillus cereus MM3]
gi|401148352|gb|EJQ55845.1| ribonuclease 3 [Bacillus cereus BAG5X2-1]
gi|401654299|gb|EJS71842.1| ribonuclease 3 [Bacillus cereus BAG2X1-2]
gi|402428149|gb|EJV60246.1| ribonuclease 3 [Bacillus cereus BAG6X1-1]
Length = 245
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 22/152 (14%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALG 77
R +++++T + A + Q++IG TF LL +A THSS+ E+N L
Sbjct: 4 RKHREKKYETK--YREAFKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLE 61
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRV 133
LG V++ +VS L K +S +L + V E S V + L +V +
Sbjct: 62 FLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFAN-----ELSFGSLVLL 116
Query: 134 SPKTNST----VPAVVCGAFRAIFGAIAVDTG 161
T PA++ F A GA+ +D G
Sbjct: 117 GKGEEMTGGRERPALLADVFEAFIGALYLDQG 148
>gi|325294757|ref|YP_004281271.1| ribonuclease 3 [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065205|gb|ADY73212.1| Ribonuclease 3 [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 234
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 13/142 (9%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSF-----SEENNRALGILGGYVIDTSVSLRLLNK 95
+ E L+++I Y FK LL++A+TH SF SEEN L LG VI VS L+ +
Sbjct: 5 SFEELERKINYFFKDKKLLKKALTHKSFSFEKDSEENYEVLEFLGDAVIGLIVSEELIKR 64
Query: 96 DIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFR 150
+ +L++ VSE S E++ VD G ++ L K +S + +++C F
Sbjct: 65 FPTKTEGELSQIRAFLVSEPSLSELAKTVDLGSYIYLGKGEHLSGGREKS--SILCDVFE 122
Query: 151 AIFGAIAVDTGKCDDAGDVFLR 172
++FGAI +D G ++A +VF R
Sbjct: 123 SLFGAIYLDGG-FENAKEVFKR 143
>gi|255946916|ref|XP_002564225.1| Pc22g01810 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591242|emb|CAP97469.1| Pc22g01810 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 151
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Query: 31 RFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSS-FSEENNRALGILGGYVIDT--S 87
R+ P +E L+K+I Y F LLR A+ S+ +++ N+ L + G V+D +
Sbjct: 4 RYLLPLPSDDEIEVLEKKIQYRFVDRELLREALQASTDRNQDGNKTLALFGDLVLDLVLA 63
Query: 88 VSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCG 147
+S R NK P+ + +S + + G LG+ K + +P V+
Sbjct: 64 ISGRKENK-----PRGKIKEMSTQKAGNVHLSKQGFDLGIDKFIVKNPSQTVVGINVMAT 118
Query: 148 AFRAIFGAIAVDTGK 162
AI GA+ +D K
Sbjct: 119 TMEAIVGAVYLDCNK 133
>gi|451812308|ref|YP_007448762.1| ribonuclease III [Candidatus Kinetoplastibacterium galatii TCC219]
gi|451778210|gb|AGF49158.1| ribonuclease III [Candidatus Kinetoplastibacterium galatii TCC219]
Length = 240
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L++ +GY F++ LL A+TH S +N L LG V++ ++++ L K D+ L
Sbjct: 6 LERSLGYKFRNSNLLELALTHRSNGSPHNERLEFLGDSVLNFAITIFLFEKYSDVDEGGL 65
Query: 105 NR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGAIAVD 159
+R R S + S A L L + +++ P+++ AIFGAI D
Sbjct: 66 SRLRASLVQ--QNSLATIASELNLSRYLKLGEGELKSGGCNRPSILADCLEAIFGAIFKD 123
Query: 160 T 160
+
Sbjct: 124 S 124
>gi|417644614|ref|ZP_12294592.1| ribonuclease III, partial [Staphylococcus warneri VCU121]
gi|330684635|gb|EGG96340.1| ribonuclease III [Staphylococcus epidermidis VCU121]
Length = 235
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 12/125 (9%)
Query: 48 QIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
++G+ + +I L ++A +HSSF ++N L LG V++ +VS L +K D+
Sbjct: 23 ELGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLP 82
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVCGAFRAIFGAI 156
+L ++ T E S + + L +++ + KT T P+++ AF A GA+
Sbjct: 83 EGNLT-KMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGAL 141
Query: 157 AVDTG 161
+D G
Sbjct: 142 YLDQG 146
>gi|314933411|ref|ZP_07840776.1| ribonuclease III [Staphylococcus caprae C87]
gi|313653561|gb|EFS17318.1| ribonuclease III [Staphylococcus caprae C87]
Length = 245
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 14/147 (9%)
Query: 27 ANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGIL 79
AN ++ + F + G++F +I L ++A +HSSF + +N L L
Sbjct: 2 ANHKKREMVIEFQQKFANKMDEWGFSFNNIDLYQQAFSHSSFINDFNMNRLDHNERLEFL 61
Query: 80 GGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSP 135
G V++ +VS L +K + +L + V E S V + +D L L + +
Sbjct: 62 GDAVLELTVSRYLFDKHPHLPEGNLTKMRATIVCEPSLVIFANKIDLNELIL--LGKGEE 119
Query: 136 KTNS-TVPAVVCGAFRAIFGAIAVDTG 161
KT T P+++ AF A GA+ +D G
Sbjct: 120 KTGGRTRPSLISDAFEAFVGALYLDQG 146
>gi|237752001|ref|ZP_04582481.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430]
gi|229376568|gb|EEO26659.1| ribonuclease III [Helicobacter winghamensis ATCC BAA-430]
Length = 223
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE-ENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
L+ +K +GY FK+ LL+ A+TH S + +N L LG V+D + L NK +
Sbjct: 4 LKHFEKTLGYHFKAQNLLKEALTHKSAKKGTHNERLEFLGDAVLDLIIGEFLYNKFPNSR 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIA 157
+L++ R S + + +++G + S + N+ +++ AF A+ GAI
Sbjct: 64 EGELSKMRASMVNEKAFAKIARYLNIGEYLFISNSEEQNNGRKKDSILSNAFEAVIGAIY 123
Query: 158 VDTG 161
+++G
Sbjct: 124 LESG 127
>gi|229019045|ref|ZP_04175885.1| Ribonuclease 3 [Bacillus cereus AH1273]
gi|423389844|ref|ZP_17367070.1| ribonuclease 3 [Bacillus cereus BAG1X1-3]
gi|423418244|ref|ZP_17395333.1| ribonuclease 3 [Bacillus cereus BAG3X2-1]
gi|228742247|gb|EEL92407.1| Ribonuclease 3 [Bacillus cereus AH1273]
gi|401106517|gb|EJQ14478.1| ribonuclease 3 [Bacillus cereus BAG3X2-1]
gi|401641935|gb|EJS59652.1| ribonuclease 3 [Bacillus cereus BAG1X1-3]
Length = 245
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALG 77
R +++++T + A + Q++IG TF LL +A THSS+ E+N L
Sbjct: 4 RKHREKKYETK--YREAFKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLE 61
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVR 132
LG V++ +VS L K +S +L + V E S V + + G + L K
Sbjct: 62 FLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEE 121
Query: 133 VSPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
++ PA++ F A GA+ +D G
Sbjct: 122 MT--GGRERPALLADVFEAFIGALYLDQG 148
>gi|312959172|ref|ZP_07773691.1| Ribonuclease 3 [Pseudomonas fluorescens WH6]
gi|311286942|gb|EFQ65504.1| Ribonuclease 3 [Pseudomonas fluorescens WH6]
Length = 229
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 4 SLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPQAR 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
L+R + E + AV GL + +R+ + +++ A A+ GAI
Sbjct: 64 EGQLSRLRARLVKGE-TLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122
Query: 157 AVDTG 161
+D G
Sbjct: 123 YLDAG 127
>gi|307256562|ref|ZP_07538343.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|306864972|gb|EFM96874.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
Length = 243
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++GY F ++ L +A+TH S +NN L LG +++ ++ L K +
Sbjct: 23 LERLQKKLGYQFTNLDYLLQALTHRSAGAKNNERLEFLGDSILNFAIGKALFEKFPKANE 82
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A+ GL + +++ + +++ AI AI
Sbjct: 83 GELS-RMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIY 141
Query: 158 VDTG 161
+D G
Sbjct: 142 LDAG 145
>gi|319943505|ref|ZP_08017787.1| ribonuclease III [Lautropia mirabilis ATCC 51599]
gi|319743320|gb|EFV95725.1| ribonuclease III [Lautropia mirabilis ATCC 51599]
Length = 247
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
TL+ ++GY F+S LL +A+TH S ++N L LG V++ +V+ L + D
Sbjct: 25 HTLEGRLGYRFQSEALLVQALTHRSHGRQHNERLEFLGDSVLNCAVASLLYARFADSPEG 84
Query: 103 DLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGA 155
L+R V + +I+C + D + LG + P+++ A A+ GA
Sbjct: 85 ALSRLRANLVKQDPLHDIACGLSLPDALILGEGE----RKSGGHRRPSILADAVEALLGA 140
Query: 156 IAVDTGKCDDAGDV 169
I +++G AG V
Sbjct: 141 IFLESGFAAAAGVV 154
>gi|225850066|ref|YP_002730300.1| ribonuclease III [Persephonella marina EX-H1]
gi|225645108|gb|ACO03294.1| ribonuclease III [Persephonella marina EX-H1]
Length = 249
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 20/140 (14%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA------LGILGGYVIDTSVSLR 91
F ++ L++++GY FK L A+THSSF+ E ++ L LG V+ VS
Sbjct: 9 FLERIKKLEQKLGYVFKDKNLPLTALTHSSFAAEYHKEIKDYEVLEFLGDAVLSLIVSEI 68
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAV---DGMHLGLQKVVRVS----PKTNSTVPAV 144
L I P+ +S+T + IS A LGL ++V +S + ++
Sbjct: 69 L----IKTFPEASEGELSQTRSAVISEAYLSRLARILGLNELVLLSRGEIAQKGMERESL 124
Query: 145 VCGAFRAIFGAIAVDTGKCD 164
+C F ++FGA+ VD CD
Sbjct: 125 LCDVFESVFGAVYVD---CD 141
>gi|417910690|ref|ZP_12554406.1| ribonuclease III [Staphylococcus epidermidis VCU105]
gi|418622070|ref|ZP_13184826.1| ribonuclease III [Staphylococcus epidermidis VCU123]
gi|418628992|ref|ZP_13191508.1| ribonuclease III [Staphylococcus epidermidis VCU127]
gi|420187562|ref|ZP_14693582.1| ribonuclease III [Staphylococcus epidermidis NIHLM039]
gi|420206447|ref|ZP_14711957.1| ribonuclease III [Staphylococcus epidermidis NIHLM008]
gi|341654878|gb|EGS78614.1| ribonuclease III [Staphylococcus epidermidis VCU105]
gi|374827445|gb|EHR91307.1| ribonuclease III [Staphylococcus epidermidis VCU123]
gi|374834986|gb|EHR98617.1| ribonuclease III [Staphylococcus epidermidis VCU127]
gi|394256004|gb|EJE00940.1| ribonuclease III [Staphylococcus epidermidis NIHLM039]
gi|394278286|gb|EJE22603.1| ribonuclease III [Staphylococcus epidermidis NIHLM008]
Length = 245
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 28 NDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILG 80
N ++ + F K +G FK+I L ++A +HSSF E+N L LG
Sbjct: 3 NQKKKEMVHDFQQKFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLG 62
Query: 81 GYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKT 137
V++ +VS L ++ + +L ++ T E S + + L +++ + KT
Sbjct: 63 DAVLELTVSRYLFDRHPHLPEGNLT-KMRATIVCEPSLVIFANKIKLNELILLGKGEEKT 121
Query: 138 NS-TVPAVVCGAFRAIFGAIAVDTG 161
T P+++ AF A GA+ +D G
Sbjct: 122 GGRTRPSLISDAFEAFVGALYLDQG 146
>gi|229162785|ref|ZP_04290742.1| Ribonuclease 3 [Bacillus cereus R309803]
gi|228620667|gb|EEK77536.1| Ribonuclease 3 [Bacillus cereus R309803]
Length = 245
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALG 77
R +++++T + A + Q++IG TF LL +A THSS+ E+N L
Sbjct: 4 RKHREKKYETK--YREAFKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLE 61
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVR 132
LG V++ +VS L K +S +L + V E S V + + G + L K
Sbjct: 62 FLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEE 121
Query: 133 VSPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
++ PA++ F A GA+ +D G
Sbjct: 122 MT--GGRERPALLADVFEAFIGALYLDQG 148
>gi|422662240|ref|ZP_16724230.1| ribonuclease III, partial [Pseudomonas syringae pv. aptata str. DSM
50252]
gi|330983107|gb|EGH81210.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 132
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERSPQ 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLALLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|307245400|ref|ZP_07527488.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306853741|gb|EFM85958.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
Length = 243
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++GY F ++ L +A+TH S +NN L LG +++ ++ L K +
Sbjct: 23 LERLQKKLGYQFTNLDYLLQALTHRSAGAKNNERLEFLGDSILNFAIGKALFEKFPKANE 82
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A+ GL + +++ + +++ AI AI
Sbjct: 83 GELS-RMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIY 141
Query: 158 VDTG 161
+D G
Sbjct: 142 LDAG 145
>gi|323526859|ref|YP_004229012.1| ribonuclease III [Burkholderia sp. CCGE1001]
gi|323383861|gb|ADX55952.1| ribonuclease III [Burkholderia sp. CCGE1001]
Length = 475
Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 6 LESRLRYEFRNAELLRQALTHRSHSSTHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDL 65
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ +G+ LG ++ P+++ A+ GA+
Sbjct: 66 SRVRANLVKQQSLYEIAQALNISEGLRLGEGELR----SGGFRRPSILADTLEAVLGAVF 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDGG 125
>gi|445059847|ref|YP_007385251.1| ribonuclease III [Staphylococcus warneri SG1]
gi|443425904|gb|AGC90807.1| ribonuclease III [Staphylococcus warneri SG1]
Length = 242
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 12/125 (9%)
Query: 48 QIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
++G+ + +I L ++A +HSSF ++N L LG V++ +VS L +K D+
Sbjct: 23 ELGFEYNNIELYQQAFSHSSFINDFNMDRLDHNERLEFLGDAVLELTVSRYLFDKHPDLP 82
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVCGAFRAIFGAI 156
+L ++ T E S + + L +++ + KT T P+++ AF A GA+
Sbjct: 83 EGNLT-KMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGAL 141
Query: 157 AVDTG 161
+D G
Sbjct: 142 YLDQG 146
>gi|417647431|ref|ZP_12297271.1| ribonuclease III [Staphylococcus epidermidis VCU144]
gi|329724352|gb|EGG60864.1| ribonuclease III [Staphylococcus epidermidis VCU144]
Length = 249
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 28 NDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILG 80
N ++ + F K +G FK+I L ++A +HSSF E+N L LG
Sbjct: 3 NQKKKEMVHDFQQKFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLG 62
Query: 81 GYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKT 137
V++ +VS L ++ + +L ++ T E S + + L +++ + KT
Sbjct: 63 DAVLELTVSRYLFDRHPHLPEGNLT-KMRATIVCEPSLVIFANKIKLNELILLGKGEEKT 121
Query: 138 NS-TVPAVVCGAFRAIFGAIAVDTG 161
T P+++ AF A GA+ +D G
Sbjct: 122 GGRTRPSLISDAFEAFVGALYLDQG 146
>gi|300814491|ref|ZP_07094752.1| ribonuclease III [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300511409|gb|EFK38648.1| ribonuclease III [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 230
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLNK 95
ETL+K + Y FK+ LL +A+THSS+ EN N L LG V+ + K
Sbjct: 6 ETLEKNLNYFFKNHALLDKALTHSSYVNENNLKSFDSNERLEFLGDAVLGLVMGEYYYKK 65
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS----PKTNSTVPAVVCGAFRA 151
+ +L++ S + N E + AV H+ L +++ +++ AF A
Sbjct: 66 YELYNEGELSKLRSASVN-EHALAVVANHIKLGELIHFGKGEIKNGGKFRESILADAFEA 124
Query: 152 IFGAIAVDT 160
+ GAI +D+
Sbjct: 125 LIGAIFLDS 133
>gi|169830829|ref|YP_001716811.1| ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
gi|169637673|gb|ACA59179.1| Ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
Length = 235
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 37 PFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-----NNRALGILGGYVIDTSVSLR 91
PF T L Q+ IG ++ LL A+THSSFS E +N+ L LG V++ VS
Sbjct: 3 PF-TNLAEFQEGIGLFWRDPDLLLEALTHSSFSYEHPGHRHNQRLEFLGDAVLEIVVSEH 61
Query: 92 LLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLG--LQKVVRVSPKTNSTVPAVVCGA 148
L + D DL + R + ++ M+LG L+ P+V+ A
Sbjct: 62 LYRRLPDAPEGDLTKIRAAVVCEPALAHVAREMNLGTYLRMGRGEELSGGRERPSVLADA 121
Query: 149 FRAIFGAIAVDTG 161
A+ GA+ +D G
Sbjct: 122 LEALLGALYLDQG 134
>gi|406921928|gb|EKD59620.1| Ribonuclease III, partial [uncultured bacterium]
Length = 183
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE---NNRALGILGGYVIDTSVSLRLLN 94
A L+ + +IG+ F+ LL RA+TH+S S +N+ L LG V+ ++ LL
Sbjct: 3 LAADLKAFEARIGHVFRQPELLLRAVTHASISSSTRPDNQRLEFLGDRVLGLVMAEALLG 62
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFR 150
D S L R + E +CA +GL V+++ A++ A
Sbjct: 63 ADTSASEGQLAPRFNALVRKE-ACAEVAREVGLGDVLKLGRSEMLSGGRRKEALLGDAME 121
Query: 151 AIFGAIAVDTGKCDDAGDVFLRVHSGEVG 179
A+ A+ D G D A + LR+ G +G
Sbjct: 122 AVIAAVYQDGG-FDAARALILRLWGGRIG 149
>gi|399923720|ref|ZP_10781078.1| ribonuclease 3 [Peptoniphilus rhinitidis 1-13]
Length = 232
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENN 73
T LE L+K++ Y FK I LL++A+THSS+ ENN
Sbjct: 4 TNLELLEKKLNYKFKDIKLLKKALTHSSYVNENN 37
>gi|229588601|ref|YP_002870720.1| ribonuclease III [Pseudomonas fluorescens SBW25]
gi|259491960|sp|C3K6Y7.1|RNC_PSEFS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|229360467|emb|CAY47324.1| ribonuclease III [Pseudomonas fluorescens SBW25]
Length = 229
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 4 SLARLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPQAR 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
L+R + E + AV GL + +R+ + +++ A A+ GAI
Sbjct: 64 EGQLSRLRARLVKGE-TLAVLARGFGLGEYLRLGSGELKSGGFRRESILADALEALIGAI 122
Query: 157 AVDTG 161
+D G
Sbjct: 123 YLDAG 127
>gi|160946001|ref|ZP_02093227.1| hypothetical protein FAEPRAM212_03534 [Faecalibacterium prausnitzii
M21/2]
gi|158443732|gb|EDP20737.1| ribonuclease III [Faecalibacterium prausnitzii M21/2]
gi|295103252|emb|CBL00796.1| RNAse III [Faecalibacterium prausnitzii SL3/3]
Length = 224
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 18/132 (13%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNK 95
LET+ IGY FK+ LL A+TH+S++ E +N L LG V+ + L +
Sbjct: 5 LETI---IGYKFKNPELLEIALTHTSYANESRTPVKHNERLEFLGDSVLQIVSADYLFHA 61
Query: 96 DIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQK-VVRVSPKTNSTVPAVVCGAF 149
D DL R VSE++ + + +D G +L L + R +T P+VV AF
Sbjct: 62 YADRPEGDLTRIRASLVSESALFQFAQEIDLGEYLRLGRGEERCGGRTR---PSVVSDAF 118
Query: 150 RAIFGAIAVDTG 161
A+ A+ +D G
Sbjct: 119 EAVIAALYLDGG 130
>gi|406945288|gb|EKD76827.1| hypothetical protein ACD_42C00585G0003 [uncultured bacterium]
Length = 221
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 49 IGYTFKSIGLLRRAMTHSSFSE-ENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRR 107
+GY FK LL+ A+TH S + ENN L LG V+ +S LL++ + +L+R
Sbjct: 8 LGYAFKDKSLLQCALTHRSKQKLENNERLEFLGDAVLSLIISTELLHRHPQFTEGELSRL 67
Query: 108 VSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDT 160
+ E + A + L + + + +S N + +++ GAF AI GAI D+
Sbjct: 68 RAALVKGE-TIAKLAVTLNIPEFLNLSFGENHSGGRLRESILSGAFEAIIGAIYCDS 123
>gi|291524528|emb|CBK90115.1| RNAse III [Eubacterium rectale DSM 17629]
gi|291527954|emb|CBK93540.1| RNAse III [Eubacterium rectale M104/1]
Length = 227
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 12/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
L Q +IGYTFK+ LL +A+THSS++ E +N L LG V++ VS L
Sbjct: 4 LNEFQSKIGYTFKNRHLLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEI-VSSEFLF 62
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
+ P+ ++ + E + A+ L L K +R+ + T +++ A
Sbjct: 63 INYPQKPEGELTKLRASIVCEPTLALCTKPLDLGKYLRLGRGEDHTGGRKRKSILSDALE 122
Query: 151 AIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 123 AVIGAIYLDGG 133
>gi|323144165|ref|ZP_08078801.1| ribonuclease III [Succinatimonas hippei YIT 12066]
gi|322416073|gb|EFY06771.1| ribonuclease III [Succinatimonas hippei YIT 12066]
Length = 233
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
AL L+ IGY F+++ LL +A+TH SF +N L LG ++ ++ +L
Sbjct: 9 ALHQLEITIGYAFQNLSLLEQALTHRSFGPVHNERLEFLGDSILGMVIAKKLYAMFPHNP 68
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPA----VVCGAFRAIFGAI 156
DL R S E + A GL +R+ P T A ++ A ++ A+
Sbjct: 69 EGDLTRMRSSLVR-ETTLAELAREFGLGNCLRLGPGELKTGGARRDSLLADAVESVIAAM 127
Query: 157 AVDTGKCDD 165
+D+G+ D
Sbjct: 128 YLDSGEEFD 136
>gi|307730527|ref|YP_003907751.1| ribonuclease III [Burkholderia sp. CCGE1003]
gi|307585062|gb|ADN58460.1| ribonuclease III [Burkholderia sp. CCGE1003]
Length = 420
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 6 LESRLRYEFRNAELLRQALTHRSHSSTHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDL 65
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S E++ A+ +G+ LG ++ P+++ A+ GA+
Sbjct: 66 SRVRANLVKQQSLYELAQALNISEGLRLGEGELR----SGGFRRPSILADTLEAVLGAVF 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDGG 125
>gi|310779301|ref|YP_003967634.1| RNAse III [Ilyobacter polytropus DSM 2926]
gi|309748624|gb|ADO83286.1| RNAse III [Ilyobacter polytropus DSM 2926]
Length = 237
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
L+K++ YTFKS LL+ A+ H S+ E NN L +LG V+D V+ L
Sbjct: 9 LEKKLKYTFKSKKLLKHALIHRSYGNENWDYKKVNNERLELLGDAVLDLVVTEYLYLHFT 68
Query: 98 DISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAI 152
S DL + VSE +IS + G HL L K ++ + + +++ F AI
Sbjct: 69 SSSEGDLAKLKSMIVSEPVLAKISRKLGVGNHLLLSKGEELTGGRDRS--SILGDVFEAI 126
Query: 153 FGAIAVDT 160
GA+ +D+
Sbjct: 127 LGAVYLDS 134
>gi|355627640|ref|ZP_09049374.1| ribonuclease III [Clostridium sp. 7_3_54FAA]
gi|354820195|gb|EHF04618.1| ribonuclease III [Clostridium sp. 7_3_54FAA]
Length = 228
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSLRLLN 94
L L+++ GY F + LL RAMTHSS++ E N L LG V++ S L +
Sbjct: 5 LMELEEKTGYHFNNRELLGRAMTHSSYANECHKSKLECNERLEFLGDAVLEIVSSDFLFH 64
Query: 95 KDIDISPKDLNR-RVSETSNVEIS-CAVD---GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
K D+ DL + R S ++ CA + G +L L K + N +VV A
Sbjct: 65 KFPDMPEGDLTKTRASMVCEPTLAYCAEELSLGKYLLLGKGEEATGGRNRN--SVVSDAM 122
Query: 150 RAIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 123 EALIGAIYLDGG 134
>gi|296136816|ref|YP_003644058.1| ribonuclease III [Thiomonas intermedia K12]
gi|295796938|gb|ADG31728.1| ribonuclease III [Thiomonas intermedia K12]
Length = 276
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 17/144 (11%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
+TALET ++GY F+ L RA+TH SF ++N L LG V++ S + L ++
Sbjct: 1 MSTALET---RLGYVFRDRKLFERALTHRSFGADHNERLEFLGDSVLNLSAAAWLYHQAA 57
Query: 98 DISPKDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAF 149
L+R V + E++ A+D L + +R+ + +++
Sbjct: 58 RQDEGQLSRLRAALVRAEALAEVARAID-----LGRFLRLGEGELQSGGAQRESILADTV 112
Query: 150 RAIFGAIAVDTGKCDDAGDVFLRV 173
A+ GAI ++ G D A +V R+
Sbjct: 113 EALLGAIYLEAG-FDTAQEVMRRL 135
>gi|406915938|gb|EKD54975.1| hypothetical protein ACD_60C00029G0002 [uncultured bacterium]
Length = 219
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
E L +++GY F LL A+TH S +E NN L LG +++ ++ L +
Sbjct: 3 EELSRKLGYHFNDAQLLTMALTHRSMNENNNERLEFLGDSIVNFVIAEALYQQFPHAQEG 62
Query: 103 DLNRRVSETSNVEISCAV-------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGA 155
L+R + N E A+ + +HLG+ ++ + +S ++ A AI GA
Sbjct: 63 HLSRFRATLINRETLGALGRQFELGNYLHLGMGELKSGGAERSS----ILSCAMEAIIGA 118
Query: 156 IAVDTG 161
I +D G
Sbjct: 119 IYLDGG 124
>gi|415769764|ref|ZP_11484435.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D17P-2]
gi|348657242|gb|EGY74837.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D17P-2]
Length = 226
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
LE LQ+QI Y F++I LL++A+TH S ++N L LG +++ ++ L ++
Sbjct: 4 NQLERLQRQINYRFQNIELLKQALTHRSAGHQHNERLEFLGDAILNLTIGEALFHQFPKC 63
Query: 100 SPKDLNR 106
+ +L+R
Sbjct: 64 NEGELSR 70
>gi|313673188|ref|YP_004051299.1| rnase iii [Calditerrivibrio nitroreducens DSM 19672]
gi|312939944|gb|ADR19136.1| RNAse III [Calditerrivibrio nitroreducens DSM 19672]
Length = 229
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 18/133 (13%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENN-----RALGILGGYVIDTSVSLRLLNKD 96
LE L + + Y F++ LL A+THSS+S EN L LG V+ VS L+ K
Sbjct: 3 LEKLNEILNYNFENKELLIEALTHSSYSYENKLCRNYERLEFLGDAVLQLIVSEYLIFKY 62
Query: 97 IDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSP-KTNS---TVPAVVCGA 148
D L+R VSE E++ +D L +R+ + NS P+++C
Sbjct: 63 KDFDEGMLSRYRAYFVSEEFISELAKQID-----LGNFIRLGKGELNSGGKDRPSILCDI 117
Query: 149 FRAIFGAIAVDTG 161
F +I A+ +D G
Sbjct: 118 FESIVAAMYLDGG 130
>gi|75762036|ref|ZP_00741948.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|74490482|gb|EAO53786.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC
35646]
Length = 262
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALG 77
R +++++T + A + Q++IG TF LL +A THSS+ E+N L
Sbjct: 21 RKYREKKYETK--YREAFKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLE 78
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVR 132
LG V++ +VS L K +S +L + V E S V + + G + L K
Sbjct: 79 FLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEE 138
Query: 133 VSPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
++ PA++ F A GA+ +D G
Sbjct: 139 MT--GGRERPALLADVFEAFIGALYLDQG 165
>gi|294500965|ref|YP_003564665.1| ribonuclease III [Bacillus megaterium QM B1551]
gi|294350902|gb|ADE71231.1| ribonuclease III [Bacillus megaterium QM B1551]
Length = 248
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 33 KTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVID 85
K + F QK+IG F + LL +A THSS+ E+N L LG V++
Sbjct: 11 KMNVKFKQNFAEFQKEIGIQFTNEALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLE 70
Query: 86 TSVSLRLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST---- 140
+VS L K +S +L + R + + + M G K+V + T
Sbjct: 71 LTVSQFLFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFG--KLVLLGKGEEMTGGRS 128
Query: 141 VPAVVCGAFRAIFGAIAVDTG 161
PA++ F A GA+ +D G
Sbjct: 129 RPALLADVFEAFIGALYLDQG 149
>gi|323484230|ref|ZP_08089599.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum
WAL-14163]
gi|323692112|ref|ZP_08106358.1| ribonuclease III [Clostridium symbiosum WAL-14673]
gi|323402472|gb|EGA94801.1| hypothetical protein HMPREF9474_01350 [Clostridium symbiosum
WAL-14163]
gi|323503835|gb|EGB19651.1| ribonuclease III [Clostridium symbiosum WAL-14673]
Length = 228
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSLRLLN 94
L L+++ GY F + LL RAMTHSS++ E N L LG V++ S L +
Sbjct: 5 LMELEEKTGYHFNNRELLGRAMTHSSYANECHKSKLECNERLEFLGDAVLEIVSSDFLFH 64
Query: 95 KDIDISPKDLNR-RVSETSNVEIS-CAVD---GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
K D+ DL + R S ++ CA + G +L L K + N +VV A
Sbjct: 65 KFPDMPEGDLTKTRASMVCEPTLAYCAEELSLGKYLLLGKGEEATGGRNRN--SVVSDAM 122
Query: 150 RAIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 123 EALIGAIYLDGG 134
>gi|406979999|gb|EKE01673.1| RNase III, dsRNA [uncultured bacterium]
Length = 223
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 49 IGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRV 108
+GY+F+++ LL RA+ H S + +N L LG ++ ++ L ++ D+ DL+R
Sbjct: 10 LGYSFQNMKLLERALRHRSMGKVSNERLEFLGDAALNFIIAAELFHRYPDMKEGDLSRLR 69
Query: 109 SETSNVEISCAVDG-MHLG--LQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
+ N ++ + G +H+G LQ + +++ A AI GA+ +D G
Sbjct: 70 ANLVNGDVLADLAGELHIGDHLQFGSGELRSGGAKRKSIIADATEAIIGAMYLDGG 125
>gi|56459918|ref|YP_155199.1| RNase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR]
gi|81363596|sp|Q5R106.1|RNC_IDILO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56178928|gb|AAV81650.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR]
Length = 229
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+K +GY+F+ GLL +AMTH S S +N L LG ++ ++ L K ++
Sbjct: 8 LTELEKIVGYSFEQQGLLHQAMTHRSASSTHNERLEFLGDSILGLVIAEALYQKFPKVAE 67
Query: 102 KDLNRRVSETSNVEISC----AVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
DL+R I C A G +GL + + + +++ A AI
Sbjct: 68 GDLSRM-----RAAIVCGRSLAKLGKKMGLGDFLSLGQGELKSGGYRRESILADAVEAII 122
Query: 154 GAIAVDT 160
GAI +D+
Sbjct: 123 GAIYLDS 129
>gi|148270763|ref|YP_001245223.1| ribonuclease III [Thermotoga petrophila RKU-1]
gi|189043372|sp|A5IN74.1|RNC_THEP1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|147736307|gb|ABQ47647.1| RNAse III [Thermotoga petrophila RKU-1]
Length = 240
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA----------LGILGGYVIDTSVSLR 91
+E QK+ G FK+ LL RA+ HSS++ E N+A L LG V++ V
Sbjct: 9 VEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 68
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCG 147
L K + DL R S ++ E+ V L L K + + T +++
Sbjct: 69 LYKKYPEAEVGDLARAKSAAASEEVLAMV-SRELNLGKFLFLGKGEEKTGGRDRDSILAD 127
Query: 148 AFRAIFGAIAVDTG 161
AF A+ AI +D G
Sbjct: 128 AFEALLAAIYLDQG 141
>gi|399545692|ref|YP_006559000.1| ribonuclease 3 [Marinobacter sp. BSs20148]
gi|399161024|gb|AFP31587.1| Ribonuclease 3 [Marinobacter sp. BSs20148]
Length = 229
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNK 95
LE LQ++IGY FKS L A+TH SF +NN L LG +++ ++ L +
Sbjct: 7 LEPLQRRIGYQFKSQERLLLALTHRSFGNQNNERLEFLGDSIVNMVIAEHLFRR 60
>gi|261868615|ref|YP_003256537.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413947|gb|ACX83318.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 226
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQ+QI Y F++I LL++A+TH S ++N L LG +++ ++ L ++ +
Sbjct: 6 LERLQRQINYRFQNIELLKQALTHRSAGHQHNERLEFLGDAILNLTIGEALFHQFPKCNE 65
Query: 102 KDLNR 106
+L+R
Sbjct: 66 GELSR 70
>gi|260913782|ref|ZP_05920258.1| ribonuclease III [Pasteurella dagmatis ATCC 43325]
gi|260632321|gb|EEX50496.1| ribonuclease III [Pasteurella dagmatis ATCC 43325]
Length = 225
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQ+++GY+F + LL +A+TH S S +N L LG +++ +++ L ++ +
Sbjct: 5 LERLQRKLGYSFNQVSLLEQALTHRSASINHNERLEFLGDAILNLTIAEALYHQFPKCNE 64
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A+ L + + P + +++ AI GAI+
Sbjct: 65 GELS-RMRATLVREPTLAILARKFELGDYLSLGPGELKSGGFRRESILADCVEAIIGAIS 123
Query: 158 VDT 160
+D+
Sbjct: 124 LDS 126
>gi|239826585|ref|YP_002949209.1| ribonuclease III [Geobacillus sp. WCH70]
gi|259491901|sp|C5D8T6.1|RNC_GEOSW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|239806878|gb|ACS23943.1| ribonuclease III [Geobacillus sp. WCH70]
Length = 246
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALGILGGYVIDTSVSLRLLN 94
+ LQK+IG F + LL +A THSS+ E+N L LG V++ +VS L
Sbjct: 18 FKELQKKIGIFFTNEKLLIQAFTHSSYVNEHRRRPHEDNERLEFLGDAVLELTVSQYLFK 77
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
K +S +L + V E S V+ + A+ G + L K ++ T PA++ F
Sbjct: 78 KFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELT--GGRTRPALLADVF 135
Query: 150 RAIFGAIAVDTG 161
A GA+ +D G
Sbjct: 136 EAFIGALYLDQG 147
>gi|126667175|ref|ZP_01738149.1| ribonuclease III [Marinobacter sp. ELB17]
gi|126628331|gb|EAZ98954.1| ribonuclease III [Marinobacter sp. ELB17]
Length = 229
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNK 95
LE LQ++IGY FKS L A+TH SF +NN L LG +++ ++ L +
Sbjct: 7 LEPLQRRIGYQFKSQERLLLALTHRSFGNQNNERLEFLGDSIVNMVIAEHLFRR 60
>gi|365966370|ref|YP_004947932.1| ribonuclease III [Aggregatibacter actinomycetemcomitans ANH9381]
gi|387121634|ref|YP_006287517.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D7S-1]
gi|415756954|ref|ZP_11481208.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D17P-3]
gi|416045384|ref|ZP_11575353.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|416056660|ref|ZP_11579924.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
gi|416073362|ref|ZP_11584205.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|416084711|ref|ZP_11587076.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. I23C]
gi|416108315|ref|ZP_11590990.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
gi|429734829|ref|ZP_19268829.1| ribonuclease III [Aggregatibacter actinomycetemcomitans Y4]
gi|444337949|ref|ZP_21151862.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|444346744|ref|ZP_21154707.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|347995373|gb|EGY36557.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|348001853|gb|EGY42581.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
gi|348004406|gb|EGY44916.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
gi|348007316|gb|EGY47635.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|348010324|gb|EGY50379.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. I23C]
gi|348655633|gb|EGY71078.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D17P-3]
gi|365745283|gb|AEW76188.1| ribonuclease III [Aggregatibacter actinomycetemcomitans ANH9381]
gi|385876126|gb|AFI87685.1| ribonuclease III [Aggregatibacter actinomycetemcomitans D7S-1]
gi|429151099|gb|EKX93983.1| ribonuclease III [Aggregatibacter actinomycetemcomitans Y4]
gi|443541300|gb|ELT51742.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|443545955|gb|ELT55680.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
Length = 226
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
LE LQ+QI Y F++I LL++A+TH S ++N L LG +++ ++ L ++
Sbjct: 4 NQLERLQRQINYRFQNIELLKQALTHRSAGHQHNERLEFLGDAILNLTIGEALFHQFPKC 63
Query: 100 SPKDLNR 106
+ +L+R
Sbjct: 64 NEGELSR 70
>gi|225571976|ref|ZP_03780840.1| hypothetical protein RUMHYD_00270 [Blautia hydrogenotrophica DSM
10507]
gi|225040509|gb|EEG50755.1| ribonuclease III [Blautia hydrogenotrophica DSM 10507]
Length = 244
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 37 PFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVS 89
L+ L+K++GY F+ I LL++A+THSS+S E N L LG V++ S
Sbjct: 7 KMTETLKELEKELGYQFRDINLLKQAVTHSSYSNEKNMGKLGCNERLEFLGDAVLEVISS 66
Query: 90 LRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVV 145
L K + +L ++ + + E + A+ + L + + +T ++V
Sbjct: 67 EFLYQKFPILQEGELTKKRA-SMVCEPTLALCAREIRLDNYLLLGHGEENTGGRKRDSIV 125
Query: 146 CGAFRAIFGAIAVDTG 161
A A+ GAI +D G
Sbjct: 126 SDALEAVIGAIYLDGG 141
>gi|416067984|ref|ZP_11582572.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|348001460|gb|EGY42202.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
Length = 226
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
LE LQ+QI Y F++I LL++A+TH S ++N L LG +++ ++ L ++
Sbjct: 4 NQLERLQRQINYRFQNIELLKQALTHRSAGHQHNERLEFLGDAILNLTIGEALFHQFPKC 63
Query: 100 SPKDLNR 106
+ +L+R
Sbjct: 64 NEGELSR 70
>gi|164688568|ref|ZP_02212596.1| hypothetical protein CLOBAR_02213 [Clostridium bartlettii DSM
16795]
gi|164602981|gb|EDQ96446.1| ribonuclease III [Clostridium bartlettii DSM 16795]
Length = 233
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 32 FKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDT 86
K + ++ +E +++I Y FK+ + A+THSS+S EN N L LG V+
Sbjct: 1 MKINRRISSNIELFEQKINYEFKNKEYILEALTHSSYSNENKNYPFNERLEFLGDSVLSI 60
Query: 87 SVSLRLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVP--A 143
+S L K+ + +L + R + +S +HLG ++ + +
Sbjct: 61 VISDYLFKKETKLPEGELTKIRANIVCEESLSEVSKNIHLGKYMLLGKGEEATGGRERIS 120
Query: 144 VVCGAFRAIFGAIAVDTG-KC 163
++ A A+ AI +D G KC
Sbjct: 121 ILADALEAVIAAIYLDGGIKC 141
>gi|332289238|ref|YP_004420090.1| ribonuclease III [Gallibacterium anatis UMN179]
gi|330432134|gb|AEC17193.1| ribonuclease III [Gallibacterium anatis UMN179]
Length = 226
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ ++ Y FK + LL++A+TH S + E+N L LG +++ ++ L ++ +
Sbjct: 6 LDRLQNKLSYQFKKMALLQQALTHRSAASEHNERLEFLGDSILNFTIGEALYHQFPKSAE 65
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
DL+ R+ T E + A + L + +++ P + +++ AI GAI
Sbjct: 66 GDLS-RMRATLVREQTLAQIAIEFDLGEYLKLGPGELKSGGYRRSSILSDCVEAIIGAIY 124
Query: 158 VDT 160
+D+
Sbjct: 125 LDS 127
>gi|42782941|ref|NP_980188.1| ribonuclease III [Bacillus cereus ATCC 10987]
gi|47570283|ref|ZP_00240932.1| ribonuclease III [Bacillus cereus G9241]
gi|206978506|ref|ZP_03239364.1| ribonuclease III [Bacillus cereus H3081.97]
gi|217961269|ref|YP_002339837.1| ribonuclease III [Bacillus cereus AH187]
gi|222097294|ref|YP_002531351.1| ribonuclease iii [Bacillus cereus Q1]
gi|228986992|ref|ZP_04147118.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|229157425|ref|ZP_04285503.1| Ribonuclease 3 [Bacillus cereus ATCC 4342]
gi|229197960|ref|ZP_04324674.1| Ribonuclease 3 [Bacillus cereus m1293]
gi|375285772|ref|YP_005106211.1| ribonuclease III [Bacillus cereus NC7401]
gi|384181662|ref|YP_005567424.1| ribonuclease III [Bacillus thuringiensis serovar finitimus YBT-020]
gi|402556030|ref|YP_006597301.1| ribonuclease III [Bacillus cereus FRI-35]
gi|423353551|ref|ZP_17331178.1| ribonuclease 3 [Bacillus cereus IS075]
gi|423374354|ref|ZP_17351692.1| ribonuclease 3 [Bacillus cereus AND1407]
gi|423395850|ref|ZP_17373051.1| ribonuclease 3 [Bacillus cereus BAG2X1-1]
gi|423406726|ref|ZP_17383875.1| ribonuclease 3 [Bacillus cereus BAG2X1-3]
gi|423567256|ref|ZP_17543503.1| ribonuclease 3 [Bacillus cereus MSX-A12]
gi|423574545|ref|ZP_17550664.1| ribonuclease 3 [Bacillus cereus MSX-D12]
gi|423604524|ref|ZP_17580417.1| ribonuclease 3 [Bacillus cereus VD102]
gi|423615890|ref|ZP_17591724.1| ribonuclease 3 [Bacillus cereus VD115]
gi|81409451|sp|Q732M1.1|RNC_BACC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|226735369|sp|B7HLI2.1|RNC_BACC7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807238|sp|B9IVD8.1|RNC_BACCQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|42738868|gb|AAS42796.1| ribonuclease III [Bacillus cereus ATCC 10987]
gi|47553047|gb|EAL11449.1| ribonuclease III [Bacillus cereus G9241]
gi|206743285|gb|EDZ54734.1| ribonuclease III [Bacillus cereus H3081.97]
gi|217063842|gb|ACJ78092.1| ribonuclease III [Bacillus cereus AH187]
gi|221241352|gb|ACM14062.1| ribonuclease III [Bacillus cereus Q1]
gi|228585439|gb|EEK43543.1| Ribonuclease 3 [Bacillus cereus m1293]
gi|228626152|gb|EEK82901.1| Ribonuclease 3 [Bacillus cereus ATCC 4342]
gi|228772770|gb|EEM21210.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|324327746|gb|ADY23006.1| ribonuclease III [Bacillus thuringiensis serovar finitimus YBT-020]
gi|358354299|dbj|BAL19471.1| ribonuclease III [Bacillus cereus NC7401]
gi|401089364|gb|EJP97535.1| ribonuclease 3 [Bacillus cereus IS075]
gi|401094266|gb|EJQ02348.1| ribonuclease 3 [Bacillus cereus AND1407]
gi|401212070|gb|EJR18816.1| ribonuclease 3 [Bacillus cereus MSX-D12]
gi|401214344|gb|EJR21074.1| ribonuclease 3 [Bacillus cereus MSX-A12]
gi|401245144|gb|EJR51502.1| ribonuclease 3 [Bacillus cereus VD102]
gi|401260427|gb|EJR66600.1| ribonuclease 3 [Bacillus cereus VD115]
gi|401653592|gb|EJS71136.1| ribonuclease 3 [Bacillus cereus BAG2X1-1]
gi|401660016|gb|EJS77499.1| ribonuclease 3 [Bacillus cereus BAG2X1-3]
gi|401797240|gb|AFQ11099.1| ribonuclease III [Bacillus cereus FRI-35]
Length = 245
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALG 77
R +++++T + A + Q++IG TF LL +A THSS+ E+N L
Sbjct: 4 RKYREKKYETK--YREAFKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLE 61
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVR 132
LG V++ +VS L K +S +L + V E S V + + G + L K
Sbjct: 62 FLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEE 121
Query: 133 VSPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
++ PA++ F A GA+ +D G
Sbjct: 122 MT--GGRERPALLADVFEAFIGALYLDQG 148
>gi|295706311|ref|YP_003599386.1| ribonuclease III [Bacillus megaterium DSM 319]
gi|294803970|gb|ADF41036.1| ribonuclease III [Bacillus megaterium DSM 319]
Length = 265
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 33 KTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVID 85
K + F QK+IG F + LL +A THSS+ E+N L LG V++
Sbjct: 28 KMNVKFKQNFAEFQKEIGIQFTNEALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLE 87
Query: 86 TSVSLRLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST---- 140
+VS L K +S +L + R + + + M G K+V + T
Sbjct: 88 LTVSQFLFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFG--KLVLLGKGEEMTGGRS 145
Query: 141 VPAVVCGAFRAIFGAIAVDTG 161
PA++ F A GA+ +D G
Sbjct: 146 RPALLADVFEAFIGALYLDQG 166
>gi|228992577|ref|ZP_04152504.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
gi|228998625|ref|ZP_04158212.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
gi|229006125|ref|ZP_04163813.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
gi|228755201|gb|EEM04558.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
gi|228761093|gb|EEM10052.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
gi|228767211|gb|EEM15847.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
Length = 245
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALG 77
R +++++T + A + Q++IG TF LL +A THSS+ E+N L
Sbjct: 4 RKYREKKYETK--YREAFKMFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLE 61
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT 137
LG V++ +VS L K +S +L ++ E S L +V +
Sbjct: 62 FLGDAVLELTVSQYLFQKYPTMSEGELT-KLRAAVVCEPSLVRFANELSFGNLVLLGKGE 120
Query: 138 NST----VPAVVCGAFRAIFGAIAVDTG 161
T PA++ F A GA+ +D G
Sbjct: 121 EMTGGRERPALLADVFEAFIGALYLDQG 148
>gi|384045183|ref|YP_005493200.1| Ribonuclease III [Bacillus megaterium WSH-002]
gi|345442874|gb|AEN87891.1| Ribonuclease III [Bacillus megaterium WSH-002]
Length = 248
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 33 KTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVID 85
K + F QK+IG F + LL +A THSS+ E+N L LG V++
Sbjct: 11 KINVKFKQNFAEFQKEIGIQFTNEALLFQAFTHSSYVNEHRRRPYEDNERLEFLGDAVLE 70
Query: 86 TSVSLRLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST---- 140
+VS L K +S +L + R + + + M G K+V + T
Sbjct: 71 LTVSQFLFKKYPTMSEGELTKLRAAVVCEPSLVTFANEMDFG--KLVLLGKGEEMTGGRS 128
Query: 141 VPAVVCGAFRAIFGAIAVDTG 161
PA++ F A GA+ +D G
Sbjct: 129 RPALLADVFEAFIGALYLDQG 149
>gi|333892335|ref|YP_004466210.1| ribonuclease III [Alteromonas sp. SN2]
gi|332992353|gb|AEF02408.1| ribonuclease III [Alteromonas sp. SN2]
Length = 229
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 23/130 (17%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L K +GYTF ++ LL +A+TH S ++++N L LG ++ + L + D+ L
Sbjct: 10 LSKALGYTFNNVALLEQALTHRSAAKQHNERLEFLGDAILGMVIGETLFKRFPDVPEGKL 69
Query: 105 NRRVS-------------ETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRA 151
R S E S E+ +HLG ++ + +S ++ A A
Sbjct: 70 TRMRSTLVKGDTLAELAREASMGEL------LHLGPGELKSGGHRRSS----ILADAVEA 119
Query: 152 IFGAIAVDTG 161
+ GAI +D+G
Sbjct: 120 VLGAIYLDSG 129
>gi|30021937|ref|NP_833568.1| ribonuclease III [Bacillus cereus ATCC 14579]
gi|206971258|ref|ZP_03232209.1| ribonuclease III [Bacillus cereus AH1134]
gi|218232410|ref|YP_002368650.1| ribonuclease III [Bacillus cereus B4264]
gi|218899002|ref|YP_002447413.1| ribonuclease III [Bacillus cereus G9842]
gi|228902352|ref|ZP_04066509.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222]
gi|228909674|ref|ZP_04073497.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200]
gi|228922603|ref|ZP_04085903.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228954126|ref|ZP_04116154.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|228960065|ref|ZP_04121729.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|228973866|ref|ZP_04134442.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228980456|ref|ZP_04140766.1| Ribonuclease 3 [Bacillus thuringiensis Bt407]
gi|229047536|ref|ZP_04193126.1| Ribonuclease 3 [Bacillus cereus AH676]
gi|229071347|ref|ZP_04204570.1| Ribonuclease 3 [Bacillus cereus F65185]
gi|229081104|ref|ZP_04213614.1| Ribonuclease 3 [Bacillus cereus Rock4-2]
gi|229111320|ref|ZP_04240873.1| Ribonuclease 3 [Bacillus cereus Rock1-15]
gi|229129125|ref|ZP_04258098.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4]
gi|229146420|ref|ZP_04274791.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24]
gi|229152048|ref|ZP_04280243.1| Ribonuclease 3 [Bacillus cereus m1550]
gi|229180125|ref|ZP_04307469.1| Ribonuclease 3 [Bacillus cereus 172560W]
gi|229192018|ref|ZP_04318988.1| Ribonuclease 3 [Bacillus cereus ATCC 10876]
gi|296504344|ref|YP_003666044.1| ribonuclease III [Bacillus thuringiensis BMB171]
gi|384187909|ref|YP_005573805.1| ribonuclease III [Bacillus thuringiensis serovar chinensis CT-43]
gi|402558825|ref|YP_006601549.1| ribonuclease III [Bacillus thuringiensis HD-771]
gi|410676223|ref|YP_006928594.1| ribonuclease 3 [Bacillus thuringiensis Bt407]
gi|423359115|ref|ZP_17336618.1| ribonuclease 3 [Bacillus cereus VD022]
gi|423385352|ref|ZP_17362608.1| ribonuclease 3 [Bacillus cereus BAG1X1-2]
gi|423412346|ref|ZP_17389466.1| ribonuclease 3 [Bacillus cereus BAG3O-2]
gi|423425985|ref|ZP_17403016.1| ribonuclease 3 [Bacillus cereus BAG3X2-2]
gi|423431869|ref|ZP_17408873.1| ribonuclease 3 [Bacillus cereus BAG4O-1]
gi|423437304|ref|ZP_17414285.1| ribonuclease 3 [Bacillus cereus BAG4X12-1]
gi|423503473|ref|ZP_17480065.1| ribonuclease 3 [Bacillus cereus HD73]
gi|423528290|ref|ZP_17504735.1| ribonuclease 3 [Bacillus cereus HuB1-1]
gi|423561745|ref|ZP_17538021.1| ribonuclease 3 [Bacillus cereus MSX-A1]
gi|423582059|ref|ZP_17558170.1| ribonuclease 3 [Bacillus cereus VD014]
gi|423585742|ref|ZP_17561829.1| ribonuclease 3 [Bacillus cereus VD045]
gi|423628942|ref|ZP_17604691.1| ribonuclease 3 [Bacillus cereus VD154]
gi|423635380|ref|ZP_17611033.1| ribonuclease 3 [Bacillus cereus VD156]
gi|423641070|ref|ZP_17616688.1| ribonuclease 3 [Bacillus cereus VD166]
gi|423649712|ref|ZP_17625282.1| ribonuclease 3 [Bacillus cereus VD169]
gi|423656708|ref|ZP_17632007.1| ribonuclease 3 [Bacillus cereus VD200]
gi|434376952|ref|YP_006611596.1| ribonuclease III [Bacillus thuringiensis HD-789]
gi|449090792|ref|YP_007423233.1| ribonuclease III [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|452200288|ref|YP_007480369.1| Ribonuclease III [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
gi|38372411|sp|Q819V8.1|RNC_BACCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|226735367|sp|B7IUK8.1|RNC_BACC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|226735368|sp|B7HDX2.1|RNC_BACC4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|29897493|gb|AAP10769.1| Ribonuclease III [Bacillus cereus ATCC 14579]
gi|206734030|gb|EDZ51201.1| ribonuclease III [Bacillus cereus AH1134]
gi|218160367|gb|ACK60359.1| ribonuclease III [Bacillus cereus B4264]
gi|218544165|gb|ACK96559.1| ribonuclease III [Bacillus cereus G9842]
gi|228591569|gb|EEK49418.1| Ribonuclease 3 [Bacillus cereus ATCC 10876]
gi|228603334|gb|EEK60811.1| Ribonuclease 3 [Bacillus cereus 172560W]
gi|228631397|gb|EEK88031.1| Ribonuclease 3 [Bacillus cereus m1550]
gi|228637053|gb|EEK93512.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24]
gi|228654362|gb|EEL10227.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4]
gi|228672096|gb|EEL27387.1| Ribonuclease 3 [Bacillus cereus Rock1-15]
gi|228702148|gb|EEL54624.1| Ribonuclease 3 [Bacillus cereus Rock4-2]
gi|228711801|gb|EEL63753.1| Ribonuclease 3 [Bacillus cereus F65185]
gi|228723783|gb|EEL75138.1| Ribonuclease 3 [Bacillus cereus AH676]
gi|228779276|gb|EEM27533.1| Ribonuclease 3 [Bacillus thuringiensis Bt407]
gi|228785891|gb|EEM33894.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228799581|gb|EEM46534.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|228805446|gb|EEM52037.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|228837032|gb|EEM82373.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228849963|gb|EEM94794.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200]
gi|228857321|gb|EEN01824.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222]
gi|296325396|gb|ADH08324.1| ribonuclease III [Bacillus thuringiensis BMB171]
gi|326941618|gb|AEA17514.1| ribonuclease III [Bacillus thuringiensis serovar chinensis CT-43]
gi|401084987|gb|EJP93233.1| ribonuclease 3 [Bacillus cereus VD022]
gi|401104414|gb|EJQ12391.1| ribonuclease 3 [Bacillus cereus BAG3O-2]
gi|401110732|gb|EJQ18631.1| ribonuclease 3 [Bacillus cereus BAG3X2-2]
gi|401116625|gb|EJQ24463.1| ribonuclease 3 [Bacillus cereus BAG4O-1]
gi|401120459|gb|EJQ28255.1| ribonuclease 3 [Bacillus cereus BAG4X12-1]
gi|401202002|gb|EJR08867.1| ribonuclease 3 [Bacillus cereus MSX-A1]
gi|401212938|gb|EJR19679.1| ribonuclease 3 [Bacillus cereus VD014]
gi|401233088|gb|EJR39584.1| ribonuclease 3 [Bacillus cereus VD045]
gi|401268487|gb|EJR74535.1| ribonuclease 3 [Bacillus cereus VD154]
gi|401278131|gb|EJR84067.1| ribonuclease 3 [Bacillus cereus VD156]
gi|401280131|gb|EJR86053.1| ribonuclease 3 [Bacillus cereus VD166]
gi|401282992|gb|EJR88889.1| ribonuclease 3 [Bacillus cereus VD169]
gi|401290449|gb|EJR96143.1| ribonuclease 3 [Bacillus cereus VD200]
gi|401635408|gb|EJS53163.1| ribonuclease 3 [Bacillus cereus BAG1X1-2]
gi|401787477|gb|AFQ13516.1| ribonuclease III [Bacillus thuringiensis HD-771]
gi|401875509|gb|AFQ27676.1| ribonuclease III [Bacillus thuringiensis HD-789]
gi|402451953|gb|EJV83772.1| ribonuclease 3 [Bacillus cereus HuB1-1]
gi|402459694|gb|EJV91431.1| ribonuclease 3 [Bacillus cereus HD73]
gi|409175352|gb|AFV19657.1| ribonuclease 3 [Bacillus thuringiensis Bt407]
gi|449024549|gb|AGE79712.1| ribonuclease III [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|452105681|gb|AGG02621.1| Ribonuclease III [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
Length = 245
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALG 77
R +++++T + A + Q++IG TF LL +A THSS+ E+N L
Sbjct: 4 RKYREKKYETK--YREAFKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLE 61
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVR 132
LG V++ +VS L K +S +L + V E S V + + G + L K
Sbjct: 62 FLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEE 121
Query: 133 VSPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
++ PA++ F A GA+ +D G
Sbjct: 122 MT--GGRERPALLADVFEAFIGALYLDQG 148
>gi|423470063|ref|ZP_17446807.1| ribonuclease 3 [Bacillus cereus BAG6O-2]
gi|402437315|gb|EJV69339.1| ribonuclease 3 [Bacillus cereus BAG6O-2]
Length = 245
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALG 77
R +++++T + A + Q++IG TF LL +A THSS+ E+N L
Sbjct: 4 RKHREKKYETK--YREAFKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLE 61
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPK 136
LG V++ +VS L K +S +L + R + + + M G +V +
Sbjct: 62 FLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFG--SLVLLGKG 119
Query: 137 TNST----VPAVVCGAFRAIFGAIAVDTG 161
T PA++ F A GA+ +D G
Sbjct: 120 EEMTGGRERPALLADVFEAFIGALYLDQG 148
>gi|375086278|ref|ZP_09732694.1| ribonuclease III [Megamonas funiformis YIT 11815]
gi|374565683|gb|EHR36946.1| ribonuclease III [Megamonas funiformis YIT 11815]
Length = 236
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 48 QIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNKDIDISP 101
++G F + LL +A+TH+S++ E +N L LG V++ + S L +
Sbjct: 17 RLGVKFNDLNLLNQALTHTSYANEAKDHSLHNERLEFLGDAVLELASSTYLFKTFTQMPE 76
Query: 102 KDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
++ + V ETS +++ ++ G +L L K R++ + P+++ AF +I GAI
Sbjct: 77 GEMTKARASVVCETSLAKLAMNLNVGQYLLLGKGERLTGGEHR--PSILADAFESIIGAI 134
Query: 157 AVDTG 161
+D G
Sbjct: 135 YLDQG 139
>gi|15895025|ref|NP_348374.1| ribonuclease III [Clostridium acetobutylicum ATCC 824]
gi|22654069|sp|Q97IA4.1|RNC_CLOAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|15024717|gb|AAK79714.1|AE007684_2 DsRNA-specific ribonuclease III [Clostridium acetobutylicum ATCC
824]
Length = 230
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 19/149 (12%)
Query: 48 QIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTSVSLRLLNKDIDISPK 102
++G F++I LL A+THSS++ EN N L LG V+ S+S K IS
Sbjct: 13 KLGIEFQNINLLVTALTHSSYANENKNAEYNERLEFLGDAVLQLSISEYFFKKYPTISEG 72
Query: 103 DLNRRVSETSNVEISCAVD----GMHLGLQKVVRVSPKTN----STVPAVVCGAFRAIFG 154
+L ++ + C + G L K +R+S T +++ A+
Sbjct: 73 ELTKK-----RALVVCGMSLHSIGERWQLGKYIRMSHGEELTGGRTRVSIIADCVEAVIA 127
Query: 155 AIAVDTGKCDDAGDVFLRVHSGEVGKALP 183
AI +D G D A + LR G + A+
Sbjct: 128 AIYLDKG-FDTAKNFILREFEGTIQNAVE 155
>gi|296273889|ref|YP_003656520.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299]
gi|296098063|gb|ADG94013.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299]
Length = 223
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSE-ENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
L+K + Y FK+ L+ A+TH SF + NN L LG V++ V L K +
Sbjct: 6 NLEKCLDYQFKNKDLIVEALTHKSFKKPYNNERLEFLGDAVLNLIVGEYLYKKFPQSNEG 65
Query: 103 DLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIAVD 159
DL++ R S + + + + LG + ++ + N T +++ AF +I GAI ++
Sbjct: 66 DLSKIRASLVNETGFTKLANEIKLGDYIYLSIAEERNKGRTKASILSDAFESIMGAIYLE 125
Query: 160 TG 161
+G
Sbjct: 126 SG 127
>gi|257460238|ref|ZP_05625341.1| ribonuclease III [Campylobacter gracilis RM3268]
gi|257442303|gb|EEV17443.1| ribonuclease III [Campylobacter gracilis RM3268]
Length = 303
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE-ENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE LQ+++GY FK+ L+ A+TH S NN L LG V+D V L K
Sbjct: 4 LEKLQEKLGYKFKNQTHLKIALTHKSAKNGHNNERLEFLGDAVMDLIVGEYLFKK-FSSD 62
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIA 157
DL++ R + + S + +G + +S + N P+++ AF AI GA+
Sbjct: 63 EGDLSKLRAALVNESSFSKFAKFLGIGENLNMSLSEERNGGREKPSLLSDAFEAIMGAVY 122
Query: 158 VDTG 161
+++G
Sbjct: 123 LESG 126
>gi|229168588|ref|ZP_04296311.1| Ribonuclease 3 [Bacillus cereus AH621]
gi|228614994|gb|EEK72096.1| Ribonuclease 3 [Bacillus cereus AH621]
Length = 245
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Query: 33 KTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALGILGGYVID 85
K + + A + Q++IG TF LL +A THSS+ E+N L LG V++
Sbjct: 10 KYEAKYREAFKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLE 69
Query: 86 TSVSLRLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST---- 140
+VS L K +S +L + R + + + M G +V + T
Sbjct: 70 LTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFG--SLVLLGKGEEMTGGRE 127
Query: 141 VPAVVCGAFRAIFGAIAVDTG 161
PA++ F A GA+ +D G
Sbjct: 128 RPALLADVFEAFIGALYLDQG 148
>gi|282856664|ref|ZP_06265932.1| ribonuclease III [Pyramidobacter piscolens W5455]
gi|282585513|gb|EFB90813.1| ribonuclease III [Pyramidobacter piscolens W5455]
Length = 231
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTSVSLRLLNKDID 98
Q++IGY F LL A+THSS++ E N L LG V++ +S L D
Sbjct: 14 EFQRRIGYEFSDPALLEEALTHSSYAHERGVPFWNERLEFLGDAVLEVLISEELFRARPD 73
Query: 99 ISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAV 158
S + R + E+ A ++ + S ++ A A+ GA+ +
Sbjct: 74 ASEGQMTRERASLVREEVLSAWGHSLGLDGLLLLGMGQRGSASENMIGDAVEALIGALYL 133
Query: 159 DTG 161
D G
Sbjct: 134 DGG 136
>gi|319792225|ref|YP_004153865.1| ribonuclease iii [Variovorax paradoxus EPS]
gi|315594688|gb|ADU35754.1| ribonuclease III [Variovorax paradoxus EPS]
Length = 228
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L LQ ++ ++F LL+ A+TH SFS ++N L LG V++ +VS L + +
Sbjct: 4 SLVALQARLKHSFSDTRLLQLALTHRSFSADHNERLEFLGDSVLNLAVSHLLYTRLSALP 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
DL+ RV + + + L L ++R+ + P+++ A A+ GA+
Sbjct: 64 EGDLS-RVRANLVKQDTLHRLALELQLSPLLRLGEGEARSGGPNRPSILADALEALIGAV 122
Query: 157 AVDTG 161
+D G
Sbjct: 123 YLDAG 127
>gi|398808559|ref|ZP_10567422.1| ribonuclease III [Variovorax sp. CF313]
gi|398087591|gb|EJL78177.1| ribonuclease III [Variovorax sp. CF313]
Length = 228
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L LQ ++ +TF LL+ A+TH SFS ++N L LG V++ +VS L + +
Sbjct: 4 SLAALQARLQHTFSDPRLLQLALTHRSFSADHNERLEFLGDSVLNLAVSHLLYMRLSALP 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGA 155
DL+R R + + G L L ++R+ P+++ A A+ GA
Sbjct: 64 EGDLSRVRANLVKQDTLHRLAVG--LALSPLLRLGEGEARSGGPNRPSILADALEALIGA 121
Query: 156 IAVDTG 161
+ +D G
Sbjct: 122 VYLDAG 127
>gi|312897519|ref|ZP_07756939.1| ribonuclease III [Megasphaera micronuciformis F0359]
gi|310621371|gb|EFQ04911.1| ribonuclease III [Megasphaera micronuciformis F0359]
Length = 238
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Query: 53 FKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLNKDIDISPKDLN 105
F LL +A+THSS++ E+ N L LG V+D V L + D+ +L
Sbjct: 21 FTDWHLLDQALTHSSYTNEDKTHHSMHNERLEFLGDAVLDMVVGEYLYRRYPDMPEGNLT 80
Query: 106 R-RVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGAIAVD 159
+ R S S ++C G H+G +R+ T +++ AF A+ GAI +D
Sbjct: 81 KARASIVSEEPLACVCAGFHMG--DYLRLGKGEALTGGRTRNSIMADAFEAVVGAIYMD 137
>gi|423522321|ref|ZP_17498794.1| ribonuclease 3 [Bacillus cereus HuA4-10]
gi|423558588|ref|ZP_17534890.1| ribonuclease 3 [Bacillus cereus MC67]
gi|401175015|gb|EJQ82218.1| ribonuclease 3 [Bacillus cereus HuA4-10]
gi|401191856|gb|EJQ98878.1| ribonuclease 3 [Bacillus cereus MC67]
Length = 245
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALG 77
R +++++T + A + Q++IG TF LL +A THSS+ E+N L
Sbjct: 4 RKHREKKYETK--YREAFKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLE 61
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPK 136
LG V++ +VS L K +S +L + R + + + M G +V +
Sbjct: 62 FLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFG--SLVLLGKG 119
Query: 137 TNST----VPAVVCGAFRAIFGAIAVDTG 161
T PA++ F A GA+ +D G
Sbjct: 120 EEMTGGRERPALLADVFEAFIGALYLDQG 148
>gi|423483439|ref|ZP_17460129.1| ribonuclease 3 [Bacillus cereus BAG6X1-2]
gi|401140990|gb|EJQ48545.1| ribonuclease 3 [Bacillus cereus BAG6X1-2]
Length = 245
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 33 KTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALGILGGYVID 85
K + + A + Q++IG TF LL +A THSS+ E+N L LG V++
Sbjct: 10 KYEAKYREAFKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLE 69
Query: 86 TSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNST 140
+VS L K +S +L + V E S V + + G + L K ++
Sbjct: 70 LTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMT--GGRE 127
Query: 141 VPAVVCGAFRAIFGAIAVDTG 161
PA++ F A GA+ +D G
Sbjct: 128 RPALLADVFEAFIGALYLDQG 148
>gi|423452850|ref|ZP_17429703.1| ribonuclease 3 [Bacillus cereus BAG5X1-1]
gi|401139409|gb|EJQ46971.1| ribonuclease 3 [Bacillus cereus BAG5X1-1]
Length = 245
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALG 77
R +++++T + A + Q++IG TF LL +A THSS+ E+N L
Sbjct: 4 RKHREKKYETK--YREAFKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLE 61
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPK 136
LG V++ +VS L K +S +L + R + + + M G +V +
Sbjct: 62 FLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFG--SLVLLGKG 119
Query: 137 TNST----VPAVVCGAFRAIFGAIAVDTG 161
T PA++ F A GA+ +D G
Sbjct: 120 EEMTGGRERPALLADVFEAFIGALYLDQG 148
>gi|417965773|ref|ZP_12607254.1| Ribonuclease 3 [Candidatus Arthromitus sp. SFB-4]
gi|417966318|ref|ZP_12607705.1| Ribonuclease 3 [Candidatus Arthromitus sp. SFB-5]
gi|417967939|ref|ZP_12608995.1| Ribonuclease 3 [Candidatus Arthromitus sp. SFB-co]
gi|418372566|ref|ZP_12964658.1| Ribonuclease 3 [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|380335812|gb|EIA25918.1| Ribonuclease 3 [Candidatus Arthromitus sp. SFB-4]
gi|380340521|gb|EIA29102.1| Ribonuclease 3 [Candidatus Arthromitus sp. SFB-co]
gi|380342235|gb|EIA30680.1| Ribonuclease 3 [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|380343077|gb|EIA31495.1| Ribonuclease 3 [Candidatus Arthromitus sp. SFB-5]
Length = 227
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTSVSLRLLNKD 96
+E Q++IG F++I +L A+THSS++ E N L LG V+ ++ L N
Sbjct: 6 IEKFQEKIGVKFRNIEILDLALTHSSYANERGLSEYNERLEFLGDSVLQLCITEYLYNNC 65
Query: 97 IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVVCGAFRAI 152
D + DL R+ + E S G L + +++S T + + A A+
Sbjct: 66 KDNNEGDLTRKRASIV-CEASLYKVGERWNLGEFIKLSKGEKLSGGKTRISTIADAVEAV 124
Query: 153 FGAIAVDTG 161
A+ +D+G
Sbjct: 125 IAAVYLDSG 133
>gi|417960378|ref|ZP_12602992.1| Ribonuclease 3, partial [Candidatus Arthromitus sp. SFB-1]
gi|380331193|gb|EIA22279.1| Ribonuclease 3, partial [Candidatus Arthromitus sp. SFB-1]
Length = 186
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTSVSLRLLNKD 96
+E Q++IG F++I +L A+THSS++ E N L LG V+ ++ L N
Sbjct: 6 IEKFQEKIGVKFRNIEILDLALTHSSYANERGLSEYNERLEFLGDSVLQLCITEYLYNNC 65
Query: 97 IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVVCGAFRAI 152
D + DL R+ + E S G L + +++S T + + A A+
Sbjct: 66 KDNNEGDLTRKRASIV-CEASLYKVGERWNLGEFIKLSKGEKLSGGKTRISTIADAVEAV 124
Query: 153 FGAIAVDTG 161
A+ +D+G
Sbjct: 125 IAAVYLDSG 133
>gi|410694560|ref|YP_003625182.1| Ribonuclease III (RNase III) [Thiomonas sp. 3As]
gi|294340985|emb|CAZ89380.1| Ribonuclease III (RNase III) [Thiomonas sp. 3As]
Length = 276
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 17/144 (11%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
+TALET ++GY F+ L RA+TH SF ++N L LG V++ S + L ++
Sbjct: 1 MSTALET---RLGYVFRDRKLFERALTHRSFGADHNERLEFLGDSVLNLSAAAWLYHQAA 57
Query: 98 DISPKDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAF 149
L+R V + E++ A+D L + +R+ + +++
Sbjct: 58 RQDEGQLSRLRAALVRAEALAEVARAID-----LGRFLRLGEGELQSGGAQRESILADTV 112
Query: 150 RAIFGAIAVDTGKCDDAGDVFLRV 173
A+ GAI ++ G D A +V R+
Sbjct: 113 EALLGAIYLEAG-FDTAQEVMRRL 135
>gi|291533418|emb|CBL06531.1| RNAse III [Megamonas hypermegale ART12/1]
Length = 240
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 13/125 (10%)
Query: 48 QIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNKDIDISP 101
++G F + LL +A+TH+S++ E +N L LG V++ + S L +
Sbjct: 17 RLGVKFNDLNLLNQALTHTSYANEAKDHSLHNERLEFLGDAVLELASSTYLFKTFTQMPE 76
Query: 102 KDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
++ + V ETS +++ ++ G +L L K R++ + P+++ AF +I GAI
Sbjct: 77 GEMTKARASVVCETSLAKLAMNLNVGQYLLLGKGERLTGGEHR--PSILADAFESIIGAI 134
Query: 157 AVDTG 161
+D G
Sbjct: 135 YLDQG 139
>gi|302693114|ref|XP_003036236.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8]
gi|300109932|gb|EFJ01334.1| hypothetical protein SCHCODRAFT_31237, partial [Schizophyllum commune
H4-8]
Length = 1342
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 64/147 (43%), Gaps = 31/147 (21%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENN----RALGILGGYVIDTSVSLRLLNKDIDIS 100
LQ ++GYTF+ GLL A+THSSF+ ++ L LG VI+ +V L K D +
Sbjct: 1089 LQAKLGYTFRDGGLLCEALTHSSFASLDSYGSYERLEFLGDAVINLAVVDYLYRKFPDAN 1148
Query: 101 PKDLN-RRVSETSNVEISCAVDGMHLGLQKVVRVS------------------PKTNSTV 141
L+ R N +S A+ HL L K V V+ P V
Sbjct: 1149 SDQLSLPRARAVCNQALS-ALSVKHLQLHKSVLVNNVELSIAINKHAPILEDKPYPEILV 1207
Query: 142 -------PAVVCGAFRAIFGAIAVDTG 161
P V+ F +I GA+ VDTG
Sbjct: 1208 KGWKLDPPKVLSDIFESIVGAVFVDTG 1234
>gi|312111708|ref|YP_003990024.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|336236083|ref|YP_004588699.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|423720626|ref|ZP_17694808.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
gi|311216809|gb|ADP75413.1| ribonuclease III [Geobacillus sp. Y4.1MC1]
gi|335362938|gb|AEH48618.1| ribonuclease III [Geobacillus thermoglucosidasius C56-YS93]
gi|383365979|gb|EID43270.1| ribonuclease III [Geobacillus thermoglucosidans TNO-09.020]
Length = 246
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALGILGGYVIDTSVSLRLLN 94
+ LQK+IG F + LL +A THSS+ E+N L LG V++ +VS L
Sbjct: 18 FKELQKKIGIFFTNEKLLIQAFTHSSYVNEHRKRPHEDNERLEFLGDAVLELTVSQYLFK 77
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
K +S +L + V E S V+ + A+ G + L K ++ T PA++ F
Sbjct: 78 KFPHMSEGELTKLRAAIVCEPSLVKFANALSFGELVLLGKGEELT--GGRTRPALLADVF 135
Query: 150 RAIFGAIAVDTG 161
A GA+ +D G
Sbjct: 136 EAFIGALYLDKG 147
>gi|420443654|ref|ZP_14942582.1| ribonuclease III [Helicobacter pylori Hp H-41]
gi|393061161|gb|EJB62030.1| ribonuclease III [Helicobacter pylori Hp H-41]
Length = 239
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 28 NDQRFKTSSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYV 83
++RF+ +SP+AT TL+K +GY+FK LL +A+TH S NN L LG V
Sbjct: 2 KNKRFQ-NSPYATPNNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAV 60
Query: 84 IDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN- 138
+ + L +K L++ VS +++ A+ LQ +RVS
Sbjct: 61 LGLVIGELLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEI 115
Query: 139 ---STVPAVVCGAFRAIFGAIAVDTG 161
P+++ AF A+ + ++ G
Sbjct: 116 SKGREKPSILSSAFEALMAGVYLEAG 141
>gi|291550077|emb|CBL26339.1| RNAse III [Ruminococcus torques L2-14]
Length = 228
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
++ L+++IGY FK L+ RA+ HSS++ E N L LG V++ S L N
Sbjct: 4 VKELEQKIGYVFKDKSLIERALMHSSYTNEKHLKKYECNERLEFLGDAVLELVSSAYLFN 63
Query: 95 KDIDISPKDLNR-RVSETSNVEIS-CAVDGMHLGLQKVVRVSPKTNST----VPAVVCGA 148
+ +S +L + R S ++ CA D +GL + + +T ++ A
Sbjct: 64 EFPKVSEGELTKTRASMVCEPSLAMCARD---IGLGDYLLLGKGEEATGGRKRDSITSDA 120
Query: 149 FRAIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 121 MEALIGAIYLDGG 133
>gi|229061452|ref|ZP_04198797.1| Ribonuclease 3 [Bacillus cereus AH603]
gi|423367893|ref|ZP_17345325.1| ribonuclease 3 [Bacillus cereus VD142]
gi|423511883|ref|ZP_17488414.1| ribonuclease 3 [Bacillus cereus HuA2-1]
gi|228717875|gb|EEL69523.1| Ribonuclease 3 [Bacillus cereus AH603]
gi|401082754|gb|EJP91019.1| ribonuclease 3 [Bacillus cereus VD142]
gi|402450144|gb|EJV81978.1| ribonuclease 3 [Bacillus cereus HuA2-1]
Length = 245
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Query: 33 KTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALGILGGYVID 85
K + + A + Q++IG TF LL +A THSS+ E+N L LG V++
Sbjct: 10 KYEAKYREAFKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLE 69
Query: 86 TSVSLRLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST---- 140
+VS L K +S +L + R + + + M G +V + T
Sbjct: 70 LTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFG--SLVLLGKGEEMTGGRE 127
Query: 141 VPAVVCGAFRAIFGAIAVDTG 161
PA++ F A GA+ +D G
Sbjct: 128 RPALLADVFEAFIGALYLDQG 148
>gi|421718283|ref|ZP_16157582.1| ribonuclease III [Helicobacter pylori R038b]
gi|407221549|gb|EKE91353.1| ribonuclease III [Helicobacter pylori R038b]
Length = 239
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 35 SSPFAT---ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+AT + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYATLNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISNGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|281413069|ref|YP_003347148.1| ribonuclease III [Thermotoga naphthophila RKU-10]
gi|281374172|gb|ADA67734.1| ribonuclease III [Thermotoga naphthophila RKU-10]
Length = 240
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA----------LGILGGYVIDTSVSLR 91
+E QK+ G FK+ LL RA+ HSS++ E N+A L LG V++ V
Sbjct: 9 VEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEI 68
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNST----VPAVVC 146
L K + DL R S ++ E+ V M+LG K + + T +++
Sbjct: 69 LYKKYPEAEVGDLARAKSAAASEEVLAMVSRKMNLG--KFLFLGKGEEKTGGRDRDSILA 126
Query: 147 GAFRAIFGAIAVDTG 161
AF A+ AI +D G
Sbjct: 127 DAFEALLAAIYLDQG 141
>gi|163941587|ref|YP_001646471.1| ribonuclease III [Bacillus weihenstephanensis KBAB4]
gi|229013032|ref|ZP_04170197.1| Ribonuclease 3 [Bacillus mycoides DSM 2048]
gi|229134657|ref|ZP_04263466.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196]
gi|423489025|ref|ZP_17465707.1| ribonuclease 3 [Bacillus cereus BtB2-4]
gi|423494750|ref|ZP_17471394.1| ribonuclease 3 [Bacillus cereus CER057]
gi|423498458|ref|ZP_17475075.1| ribonuclease 3 [Bacillus cereus CER074]
gi|423518539|ref|ZP_17495020.1| ribonuclease 3 [Bacillus cereus HuA2-4]
gi|423592155|ref|ZP_17568186.1| ribonuclease 3 [Bacillus cereus VD048]
gi|423598840|ref|ZP_17574840.1| ribonuclease 3 [Bacillus cereus VD078]
gi|423661311|ref|ZP_17636480.1| ribonuclease 3 [Bacillus cereus VDM022]
gi|423669423|ref|ZP_17644452.1| ribonuclease 3 [Bacillus cereus VDM034]
gi|423674398|ref|ZP_17649337.1| ribonuclease 3 [Bacillus cereus VDM062]
gi|229564349|sp|A9VT87.1|RNC_BACWK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|163863784|gb|ABY44843.1| Ribonuclease III [Bacillus weihenstephanensis KBAB4]
gi|228648703|gb|EEL04729.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196]
gi|228748286|gb|EEL98146.1| Ribonuclease 3 [Bacillus mycoides DSM 2048]
gi|401150843|gb|EJQ58295.1| ribonuclease 3 [Bacillus cereus CER057]
gi|401160507|gb|EJQ67885.1| ribonuclease 3 [Bacillus cereus CER074]
gi|401160747|gb|EJQ68122.1| ribonuclease 3 [Bacillus cereus HuA2-4]
gi|401232288|gb|EJR38790.1| ribonuclease 3 [Bacillus cereus VD048]
gi|401237110|gb|EJR43567.1| ribonuclease 3 [Bacillus cereus VD078]
gi|401298550|gb|EJS04150.1| ribonuclease 3 [Bacillus cereus VDM034]
gi|401301352|gb|EJS06941.1| ribonuclease 3 [Bacillus cereus VDM022]
gi|401309949|gb|EJS15282.1| ribonuclease 3 [Bacillus cereus VDM062]
gi|402432273|gb|EJV64332.1| ribonuclease 3 [Bacillus cereus BtB2-4]
Length = 245
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 33 KTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALGILGGYVID 85
K + + A + Q++IG TF LL +A THSS+ E+N L LG V++
Sbjct: 10 KYEAKYREAFKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLE 69
Query: 86 TSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNST 140
+VS L K +S +L + V E S V + + G + L K ++
Sbjct: 70 LTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGKGEEMT--GGRE 127
Query: 141 VPAVVCGAFRAIFGAIAVDTG 161
PA++ F A GA+ +D G
Sbjct: 128 RPALLADVFEAFIGALYLDQG 148
>gi|225025907|ref|ZP_03715099.1| hypothetical protein EUBHAL_00143 [Eubacterium hallii DSM 3353]
gi|224956693|gb|EEG37902.1| ribonuclease III [Eubacterium hallii DSM 3353]
Length = 232
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 14/141 (9%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
L+++IGYTF + L AMTHSS++ E NN L LG V++ ++S + +
Sbjct: 10 LEEKIGYTFTNKRTLALAMTHSSYANEQRGRRKANNERLEFLGDAVLEVTISDYVFREYP 69
Query: 98 DISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
+ L ++ + E + A+ + L K + +S ++T +++ AF A+
Sbjct: 70 GYNEGRLT-KLRSSLVCEYTLAICARDVELGKYLLLSRGEDATGGRERDSILSDAFEALI 128
Query: 154 GAIAVDTGKCDDAGDVFLRVH 174
GAI +D G D F+ H
Sbjct: 129 GAIYLDGGM--DRARTFIHTH 147
>gi|30263852|ref|NP_846229.1| ribonuclease III [Bacillus anthracis str. Ames]
gi|47529278|ref|YP_020627.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49186699|ref|YP_029951.1| ribonuclease III [Bacillus anthracis str. Sterne]
gi|49478414|ref|YP_037910.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|165873286|ref|ZP_02217894.1| ribonuclease III [Bacillus anthracis str. A0488]
gi|167636662|ref|ZP_02394952.1| ribonuclease III [Bacillus anthracis str. A0442]
gi|167642023|ref|ZP_02400254.1| ribonuclease III [Bacillus anthracis str. A0193]
gi|170689645|ref|ZP_02880826.1| ribonuclease III [Bacillus anthracis str. A0465]
gi|177655964|ref|ZP_02937116.1| ribonuclease III [Bacillus anthracis str. A0174]
gi|190565836|ref|ZP_03018755.1| ribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|196035867|ref|ZP_03103269.1| ribonuclease III [Bacillus cereus W]
gi|196042325|ref|ZP_03109601.1| ribonuclease III [Bacillus cereus NVH0597-99]
gi|196047446|ref|ZP_03114658.1| ribonuclease III [Bacillus cereus 03BB108]
gi|218904979|ref|YP_002452813.1| ribonuclease III [Bacillus cereus AH820]
gi|225865830|ref|YP_002751208.1| ribonuclease III [Bacillus cereus 03BB102]
gi|227813243|ref|YP_002813252.1| ribonuclease III [Bacillus anthracis str. CDC 684]
gi|228916486|ref|ZP_04080052.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|228928897|ref|ZP_04091929.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228935163|ref|ZP_04097990.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228947568|ref|ZP_04109858.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|229092891|ref|ZP_04224025.1| Ribonuclease 3 [Bacillus cereus Rock3-42]
gi|229123363|ref|ZP_04252567.1| Ribonuclease 3 [Bacillus cereus 95/8201]
gi|229186089|ref|ZP_04313258.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1]
gi|229599971|ref|YP_002868086.1| ribonuclease III [Bacillus anthracis str. A0248]
gi|254683443|ref|ZP_05147303.1| ribonuclease III [Bacillus anthracis str. CNEVA-9066]
gi|254721380|ref|ZP_05183169.1| ribonuclease III [Bacillus anthracis str. A1055]
gi|254735887|ref|ZP_05193593.1| ribonuclease III [Bacillus anthracis str. Western North America
USA6153]
gi|254739520|ref|ZP_05197217.1| ribonuclease III [Bacillus anthracis str. Kruger B]
gi|254751172|ref|ZP_05203211.1| ribonuclease III [Bacillus anthracis str. Vollum]
gi|254756720|ref|ZP_05208749.1| ribonuclease III [Bacillus anthracis str. Australia 94]
gi|376267744|ref|YP_005120456.1| Ribonuclease III [Bacillus cereus F837/76]
gi|386737671|ref|YP_006210852.1| ribonuclease 3 [Bacillus anthracis str. H9401]
gi|421507389|ref|ZP_15954309.1| ribonuclease III [Bacillus anthracis str. UR-1]
gi|421639604|ref|ZP_16080195.1| ribonuclease III [Bacillus anthracis str. BF1]
gi|423550402|ref|ZP_17526729.1| ribonuclease 3 [Bacillus cereus ISP3191]
gi|38372420|sp|Q81WI8.1|RNC_BACAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|81395098|sp|Q6HEW6.1|RNC_BACHK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|226735366|sp|B7JJT6.1|RNC_BACC0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807235|sp|C3P5Q0.1|RNC_BACAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807236|sp|C3L778.1|RNC_BACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807237|sp|C1EP73.1|RNC_BACC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|30258496|gb|AAP27715.1| ribonuclease III [Bacillus anthracis str. Ames]
gi|47504426|gb|AAT33102.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49180626|gb|AAT56002.1| ribonuclease III [Bacillus anthracis str. Sterne]
gi|49329970|gb|AAT60616.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|164710971|gb|EDR16540.1| ribonuclease III [Bacillus anthracis str. A0488]
gi|167510022|gb|EDR85437.1| ribonuclease III [Bacillus anthracis str. A0193]
gi|167527913|gb|EDR90729.1| ribonuclease III [Bacillus anthracis str. A0442]
gi|170666390|gb|EDT17172.1| ribonuclease III [Bacillus anthracis str. A0465]
gi|172079908|gb|EDT65015.1| ribonuclease III [Bacillus anthracis str. A0174]
gi|190562755|gb|EDV16721.1| ribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|195991516|gb|EDX55482.1| ribonuclease III [Bacillus cereus W]
gi|196021754|gb|EDX60449.1| ribonuclease III [Bacillus cereus 03BB108]
gi|196026847|gb|EDX65478.1| ribonuclease III [Bacillus cereus NVH0597-99]
gi|218539426|gb|ACK91824.1| ribonuclease III [Bacillus cereus AH820]
gi|225790989|gb|ACO31206.1| ribonuclease III [Bacillus cereus 03BB102]
gi|227006213|gb|ACP15956.1| ribonuclease III [Bacillus anthracis str. CDC 684]
gi|228597265|gb|EEK54916.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1]
gi|228660139|gb|EEL15775.1| Ribonuclease 3 [Bacillus cereus 95/8201]
gi|228690513|gb|EEL44296.1| Ribonuclease 3 [Bacillus cereus Rock3-42]
gi|228812088|gb|EEM58419.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228824528|gb|EEM70333.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228830704|gb|EEM76309.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228843065|gb|EEM88147.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|229264379|gb|ACQ46016.1| ribonuclease III [Bacillus anthracis str. A0248]
gi|364513544|gb|AEW56943.1| Ribonuclease III [Bacillus cereus F837/76]
gi|384387523|gb|AFH85184.1| Ribonuclease 3 [Bacillus anthracis str. H9401]
gi|401190018|gb|EJQ97068.1| ribonuclease 3 [Bacillus cereus ISP3191]
gi|401822523|gb|EJT21673.1| ribonuclease III [Bacillus anthracis str. UR-1]
gi|403393269|gb|EJY90514.1| ribonuclease III [Bacillus anthracis str. BF1]
Length = 245
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALG 77
R +++++T + A + Q++IG TF LL +A THSS+ E+N L
Sbjct: 4 RKYREKKYETK--YREAFKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLE 61
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVR 132
LG V++ +VS L K +S +L + V E S V + + G + L K
Sbjct: 62 FLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEE 121
Query: 133 VSPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
++ PA++ F A GA+ +D G
Sbjct: 122 MT--GGRERPALLADVFEAFIGALYLDQG 148
>gi|416052977|ref|ZP_11578612.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|418464980|ref|ZP_13035919.1| ribonuclease III [Aggregatibacter actinomycetemcomitans RhAA1]
gi|347991769|gb|EGY33232.1| ribonuclease III [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|359756935|gb|EHK91092.1| ribonuclease III [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 226
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
LE LQ+QI Y F++I LL++A+TH S ++N L LG +++ ++ L ++
Sbjct: 4 NQLERLQRQINYGFQNIELLKQALTHRSAGHQHNERLEFLGDAILNLTIGEALFHQFPKC 63
Query: 100 SPKDLNR 106
+ +L+R
Sbjct: 64 NEGELSR 70
>gi|416014900|ref|ZP_11562617.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. B076]
gi|416028879|ref|ZP_11571768.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
gi|422405019|ref|ZP_16482067.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
gi|320325568|gb|EFW81630.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. B076]
gi|320327146|gb|EFW83160.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
gi|330879244|gb|EGH13393.1| ribonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
Length = 229
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPQ 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G +LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLALLARGFNLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|242309254|ref|ZP_04808409.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
gi|239524295|gb|EEQ64161.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
Length = 224
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDISPK- 102
Q+ +GY FK+ LL+ A+TH S + +N L LG V+D + L K SP+
Sbjct: 6 FQQTLGYHFKNQNLLKEALTHKSAKKSTHNERLEFLGDAVLDLIIG-EFLYKKFPSSPEG 64
Query: 103 DLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAV 158
+L++ + N E + A +LG+ + + +S +++ AF AI GAI +
Sbjct: 65 ELSKMRASMVN-EKAFAKIARYLGIGEYLFISHSEEQNHGRDKDSILSNAFEAIIGAIYL 123
Query: 159 DTG 161
++G
Sbjct: 124 ESG 126
>gi|302383079|ref|YP_003818902.1| ribonuclease III [Brevundimonas subvibrioides ATCC 15264]
gi|302193707|gb|ADL01279.1| ribonuclease III [Brevundimonas subvibrioides ATCC 15264]
Length = 237
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 16/159 (10%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALG----------ILGGYVIDTSV 88
A A+ L +++G+ F+ LL RA+THSS E ++A G LG V+ V
Sbjct: 6 AEAVTALVQRLGHDFRDPALLERALTHSSVGEGADKAAGKPARHNERLEFLGDRVLGLLV 65
Query: 89 SLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAV 144
+ RL + +L+ R+ + + +C G L + +R+SP T V
Sbjct: 66 AQRLHHDFPAADEGELSSRLHALVD-KHACGRVGEALKIGDALRLSPGETKTGGRRKEGV 124
Query: 145 VCGAFRAIFGAIAVDTGKCDDAGDVFLRVHSGEVGKALP 183
V A A+ A+ +D G + A VF R + E+ P
Sbjct: 125 VADAVEALLAAVFLDGG-LEAARAVFDRAWAHELASPAP 162
>gi|403253913|ref|ZP_10920213.1| ribonuclease III [Thermotoga sp. EMP]
gi|402810816|gb|EJX25305.1| ribonuclease III [Thermotoga sp. EMP]
Length = 240
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA----------LGILGGYVIDTSVSLR 91
+E QK+ G FK+ LL RA+ HSS++ E N+A L LG V++ V
Sbjct: 9 VEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 68
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNST----VPAVVC 146
L K + DL R S ++ E+ V M+LG K + + T +++
Sbjct: 69 LYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLG--KFLFLGKGEEKTGGRDRDSILA 126
Query: 147 GAFRAIFGAIAVDTG 161
AF A+ AI +D G
Sbjct: 127 DAFEALLAAIYLDQG 141
>gi|282882375|ref|ZP_06291003.1| ribonuclease III [Peptoniphilus lacrimalis 315-B]
gi|281297796|gb|EFA90264.1| ribonuclease III [Peptoniphilus lacrimalis 315-B]
Length = 230
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLNK 95
ETL+K + Y FK+ LL +A+THSS+ EN N L LG V+ + K
Sbjct: 6 ETLEKNLNYFFKNHALLDKALTHSSYVNENNLKSFDSNERLEFLGDAVLGLVMGEYYYKK 65
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS----PKTNSTVPAVVCGAFRA 151
+ +L++ S + N E + AV H+ L +++ +++ AF A
Sbjct: 66 YELYNEGELSKLRSASVN-EHALAVVANHIKLGELIHFGKGEIKNGGKFRESILADAFEA 124
Query: 152 IFGAIAVDT 160
+ GA+ +D+
Sbjct: 125 LIGAVFLDS 133
>gi|429212165|ref|ZP_19203330.1| ribonuclease III [Pseudomonas sp. M1]
gi|428156647|gb|EKX03195.1| ribonuclease III [Pseudomonas sp. M1]
Length = 229
Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
+ L+ L++++GYTFK L+ A+TH SF+ NN L LG +++ + L +
Sbjct: 1 MSNTLDRLERKLGYTFKDQDLMVLALTHRSFAGRNNERLEFLGDAILNFVIGEALFSHFP 60
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
L+R R ++ G LG +R+ + +++ A A+
Sbjct: 61 QAREGQLSRLRARLVKGETLALLARGFELG--DYLRLGSGELKSGGFRRESILADAMEAL 118
Query: 153 FGAIAVDTG 161
GAI +DTG
Sbjct: 119 IGAIYLDTG 127
>gi|78356751|ref|YP_388200.1| ribonuclease III [Desulfovibrio alaskensis G20]
gi|90101625|sp|Q310Z1.1|RNC_DESDG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|78219156|gb|ABB38505.1| ribonuclease III [Desulfovibrio alaskensis G20]
Length = 229
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSE------ENNRALGILGGYVIDTSVSLRLLNKD 96
E LQ + Y F + LL A+THSS++ E+N L LG V++ +VS +L +
Sbjct: 3 EKLQDVLCYRFADVRLLETALTHSSYANERGTEIEHNERLEYLGDAVLELTVSEQLFTRF 62
Query: 97 IDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFRA 151
+ L R VS+ S E++ + +L L K + T +V+ AF A
Sbjct: 63 PEAREGQLTRMRARLVSKPSLAELARELKLDTYLLLGKG--EESQGGRTRSSVLSDAFEA 120
Query: 152 IFGAIAVDTGKCDDAGDVFLRVHS 175
I GAI +D G AG L V S
Sbjct: 121 ILGAIFLDGGYA-AAGKTVLHVFS 143
>gi|420413665|ref|ZP_14912788.1| ribonuclease III [Helicobacter pylori NQ4099]
gi|393028194|gb|EJB29281.1| ribonuclease III [Helicobacter pylori NQ4099]
Length = 239
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 35 SSPFAT---ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+AT + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYATPNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|52141634|ref|YP_085190.1| ribonuclease III [Bacillus cereus E33L]
gi|81686565|sp|Q636H7.1|RNC_BACCZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|51975103|gb|AAU16653.1| ribonuclease III [Bacillus cereus E33L]
Length = 245
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALG 77
R +++++T + A + Q++IG TF LL +A THSS+ E+N L
Sbjct: 4 RKYREKKYETK--YREAFKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLE 61
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRV 133
LG V++ +VS L K +S +L + V E S V + + GL + +
Sbjct: 62 FLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELS--FGGLVLLGKG 119
Query: 134 SPKTNS-TVPAVVCGAFRAIFGAIAVDTG 161
T PA++ F A GA+ +D G
Sbjct: 120 EEMTGGRERPALLADVFEAFIGALYLDQG 148
>gi|119471905|ref|ZP_01614213.1| RNase III, ds RNA [Alteromonadales bacterium TW-7]
gi|392536909|ref|ZP_10284046.1| RNase III, ds RNA [Pseudoalteromonas marina mano4]
gi|119445278|gb|EAW26568.1| RNase III, ds RNA [Alteromonadales bacterium TW-7]
Length = 225
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L +IGY F GLL +AMTH S ++N L LG ++ ++ L K DL
Sbjct: 8 LYNKIGYEFSDQGLLEQAMTHRSHKGQHNERLEFLGDSILSFVIANALYAKFPKAREGDL 67
Query: 105 NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDT 160
+R S + + A G+ GL +R+ P + + + A AI GA +D+
Sbjct: 68 SRMRSTLVRGQ-TLAEFGVEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAAFLDS 126
Query: 161 G--KCDD 165
G +C +
Sbjct: 127 GIERCSE 133
>gi|165975962|ref|YP_001651555.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|238687533|sp|B0BUA6.1|RNC_ACTPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|165876063|gb|ABY69111.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
Length = 223
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++GY F ++ L +A+TH S +NN L LG +++ ++ L K +
Sbjct: 3 LERLQKKLGYQFTNLDYLLQALTHRSAGAKNNERLEFLGDSILNFAIGKALFEKFPKANE 62
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A+ GL + +++ + +++ AI AI
Sbjct: 63 GELS-RMRATLVREQTLAILARKFGLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIY 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDAG 125
>gi|407938157|ref|YP_006853798.1| ribonuclease III [Acidovorax sp. KKS102]
gi|407895951|gb|AFU45160.1| ribonuclease III [Acidovorax sp. KKS102]
Length = 227
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L LQ ++ + F LL+RA TH SFS ++N L LG V++ +V+ L + +
Sbjct: 5 LLALQGRLQHVFSDPSLLQRATTHRSFSADHNERLEFLGDSVLNLAVASLLYQRLSALPE 64
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRV----SPKTNSTVPAVVCGAFRAIFGAIA 157
DL+ RV + + + L + +V+R+ + P+++ A A+ GA+
Sbjct: 65 GDLS-RVRANLVKQDTLHQLAVRLKVSEVLRLGEGEAKSGGQQRPSILADALEALIGAVY 123
Query: 158 VDTG 161
+D G
Sbjct: 124 LDAG 127
>gi|160938006|ref|ZP_02085363.1| hypothetical protein CLOBOL_02899 [Clostridium bolteae ATCC
BAA-613]
gi|158439000|gb|EDP16755.1| hypothetical protein CLOBOL_02899 [Clostridium bolteae ATCC
BAA-613]
Length = 234
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRL 92
+ L+ L+++I Y FK+ L +A+THSS++ E+ N L LG V++ S L
Sbjct: 3 SHLKELEERIAYEFKNKNLFTQALTHSSYANEHRLDHSRCNERLEFLGDAVLEIVTSEFL 62
Query: 93 LNKDIDISPKDLNR-RVSETSNVEIS-CAVD---GMHLGLQKVVRVSPKTNSTVPAVVCG 147
K + DL + R S ++ CA D G +L L K + N +VV
Sbjct: 63 YRKYETLPEGDLTKIRASIVCEPTLAYCAGDIELGQYLYLGKGEDATGGRNRN--SVVSD 120
Query: 148 AFRAIFGAIAVDTG 161
A A+ GAI +D G
Sbjct: 121 AMEALIGAIYLDGG 134
>gi|195997771|ref|XP_002108754.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens]
gi|190589530|gb|EDV29552.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens]
Length = 1018
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE-----ENNRALGILGGYVIDTSVSLRLLNKD 96
LE L+K IGY+F++ + RA+THSS+ E+N+ L LG ++ ++ N
Sbjct: 814 LERLEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFFNSH 873
Query: 97 IDISPKDLNRRVSETSNVEISC-AVDGMHLGLQKVV 131
D P L+ + + V C AV G+ +G+ K V
Sbjct: 874 PDAKPAKLHD--FQEAIVNNKCLAVIGIAIGVSKYV 907
>gi|307722018|ref|YP_003893158.1| RNAse III [Sulfurimonas autotrophica DSM 16294]
gi|306980111|gb|ADN10146.1| RNAse III [Sulfurimonas autotrophica DSM 16294]
Length = 227
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE-ENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
++TL++++GY FK L+ A+TH S+ + +N L LG V+D V L K
Sbjct: 5 IKTLEEKLGYEFKDKKLIIEALTHKSYKQPYDNERLEFLGDAVLDLVVGEYLFRKFRTSD 64
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIA 157
L++ R S + +HLG ++ + N +++ AF AI GA+
Sbjct: 65 EGKLSKIRASLVNETGFDKLARALHLGDYILLSNAEDNNGGREKSSLLSNAFEAIMGAVY 124
Query: 158 VDTG 161
++ G
Sbjct: 125 LEAG 128
>gi|15643859|ref|NP_228908.1| ribonuclease III [Thermotoga maritima MSB8]
gi|418044738|ref|ZP_12682834.1| Ribonuclease 3 [Thermotoga maritima MSB8]
gi|7531194|sp|Q9X0I6.1|RNC_THEMA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|4981647|gb|AAD36178.1|AE001769_8 ribonuclease III [Thermotoga maritima MSB8]
gi|351677820|gb|EHA60967.1| Ribonuclease 3 [Thermotoga maritima MSB8]
Length = 240
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA----------LGILGGYVIDTSVSLR 91
+E QK+ G FK+ LL RA+ HSS++ E N+A L LG V++ V
Sbjct: 9 VEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 68
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNST----VPAVVC 146
L K + DL R S ++ E+ V M+LG K + + T +++
Sbjct: 69 LYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLG--KFLFLGKGEEKTGGRDRDSILA 126
Query: 147 GAFRAIFGAIAVDTG 161
AF A+ AI +D G
Sbjct: 127 DAFEALLAAIYLDQG 141
>gi|319649604|ref|ZP_08003760.1| rnc protein [Bacillus sp. 2_A_57_CT2]
gi|317398766|gb|EFV79448.1| rnc protein [Bacillus sp. 2_A_57_CT2]
Length = 246
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 24 VRAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRAL 76
+R+ D+ K+ + Q +IG F++ LL++A THSS+ E+N L
Sbjct: 1 MRSNKDKERKSFRAIEKQFKEFQTEIGIQFENEKLLKQAFTHSSYVNEHRRKPYEDNERL 60
Query: 77 GILGGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVV 131
LG V++ +VS L K +S +L + V E S V + A+ G + L K
Sbjct: 61 EFLGDAVLELTVSKFLYLKYPMMSEGELTKLRAAVVCEPSLVSFAHALSFGSLVLLGKGE 120
Query: 132 RVSPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
++ T PA++ F A GA+ +D G
Sbjct: 121 EMT--GGRTRPALLADVFEAFIGALYLDKG 148
>gi|253997000|ref|YP_003049064.1| ribonuclease III [Methylotenera mobilis JLW8]
gi|253983679|gb|ACT48537.1| ribonuclease III [Methylotenera mobilis JLW8]
Length = 230
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 11/126 (8%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
+ L +++ + F + LL +A+TH S++ +NN L LG ++ ++ +L + ++
Sbjct: 4 QELLRRLSHQFVNESLLTQALTHRSYAGQNNERLEFLGDGALNFIIAHQLYQRFPKLAEG 63
Query: 103 DLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGA 155
DL+R V E + EI+ ++ D + LG ++ + P+++ A AI GA
Sbjct: 64 DLSRLRAQLVKEATLSEIALSLNLGDALLLGEGELKSAGWRR----PSILADALEAIIGA 119
Query: 156 IAVDTG 161
+ +D+G
Sbjct: 120 VYLDSG 125
>gi|342214507|ref|ZP_08707197.1| ribonuclease III [Veillonella sp. oral taxon 780 str. F0422]
gi|341592665|gb|EGS35537.1| ribonuclease III [Veillonella sp. oral taxon 780 str. F0422]
Length = 243
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 25/168 (14%)
Query: 34 TSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDT 86
TS L L + ++I L RA+THSS++ E +N L LG V+D
Sbjct: 10 TSKAREALLHELIANLHLPLRNISTLNRALTHSSYANEHKLSHEYHNERLEFLGDAVLDL 69
Query: 87 SVSLRLLNKDIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTV 141
+ L +++ +L R V E S E S +D G +L L + R N
Sbjct: 70 IIGEYLFTTYPEMTEGELTRLKACTVCEGSLAECSRTLDLGKYLRLGRGERHCGGANRN- 128
Query: 142 PAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRVH---------SGEVGK 180
+++ F A+ GAI ++ G D G F+ H SG+VGK
Sbjct: 129 -SILADTFEAVLGAIYLECGY--DVGKQFVLSHLHGYMNMALSGKVGK 173
>gi|365157110|ref|ZP_09353391.1| ribonuclease 3 [Bacillus smithii 7_3_47FAA]
gi|363625844|gb|EHL76855.1| ribonuclease 3 [Bacillus smithii 7_3_47FAA]
Length = 243
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 24/146 (16%)
Query: 28 NDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILG 80
+QRF+ LQK++ F LL +A THSS+ E +N L LG
Sbjct: 12 EEQRFRQ----------LQKKLEIDFHDQSLLMQAFTHSSYVNEHRKKPNDDNERLEFLG 61
Query: 81 GYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSP 135
V++ +VS L NK +S +L + V E S V S + G ++ L K ++
Sbjct: 62 DAVLELTVSNYLFNKYPFMSEGELTKLRAAVVCEPSLVGFSNELQFGQYIRLGKGEELT- 120
Query: 136 KTNSTVPAVVCGAFRAIFGAIAVDTG 161
T PA++ F A GA+ +D G
Sbjct: 121 -GGRTRPALLADVFEAFIGALYLDQG 145
>gi|407714301|ref|YP_006834866.1| ribonuclease III [Burkholderia phenoliruptrix BR3459a]
gi|407236485|gb|AFT86684.1| ribonuclease III [Burkholderia phenoliruptrix BR3459a]
Length = 472
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
++ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + + DL
Sbjct: 1 MESRLRYEFRNAELLRQALTHRSHSSTHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDL 60
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + S EI+ A+ +G+ LG ++ P+++ A+ GA+
Sbjct: 61 SRVRANLVKQQSLYEIAQALNISEGLRLGEGELR----SGGFRRPSILADTLEAVLGAVF 116
Query: 158 VDTG 161
+D G
Sbjct: 117 LDGG 120
>gi|373867394|ref|ZP_09603792.1| Ribonuclease III [Sulfurimonas gotlandica GD1]
gi|372469495|gb|EHP29699.1| Ribonuclease III [Sulfurimonas gotlandica GD1]
Length = 226
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-ENNRALGILGGYVIDTSVSLRLLNKDI 97
+T +E L+ +GYTFK L+ A+TH S+ + +N L LG V+D V L K
Sbjct: 2 STNIEILENTLGYTFKDKQLIIEALTHKSYKQPYDNERLEFLGDAVLDLIVGEYLFTKFK 61
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFG 154
+L++ R S + ++LG + + + N +++ AF A+ G
Sbjct: 62 KSDEGNLSKIRASLVNETGFDKLARSLNLGEYIFLSNAEQNNGGREKSSLLSNAFEAVIG 121
Query: 155 AIAVDTG 161
AI ++ G
Sbjct: 122 AIYLEAG 128
>gi|452995961|emb|CCQ92364.1| ribonuclease III [Clostridium ultunense Esp]
Length = 232
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALGILGGYVIDTSVSLRLLNKDI 97
LQ+++G F+ GLLR A TH+S+ +E+N L LG V++ +VS L +
Sbjct: 10 LQERLGTAFRDEGLLRLAFTHASYINEHHRRVDEDNERLEFLGDAVLELTVSHYLYRRTP 69
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKT--NSTVPAVVCGAFRAIFG 154
+S ++ + R S + D + G ++ + + PA++ F A G
Sbjct: 70 PMSEGEMTKLRASIVCEPSLVSYADSLGFGDYILLGKGEELAGGRSRPALLADVFEAFIG 129
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 130 ALYLDQG 136
>gi|423612066|ref|ZP_17587927.1| ribonuclease 3 [Bacillus cereus VD107]
gi|401247073|gb|EJR53417.1| ribonuclease 3 [Bacillus cereus VD107]
Length = 245
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Query: 33 KTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALGILGGYVID 85
K + + A + Q++IG TF LL +A THSS+ E+N L LG V++
Sbjct: 10 KYEAKYREAFKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLE 69
Query: 86 TSVSLRLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST---- 140
+VS L K +S +L + R + + + M G +V + T
Sbjct: 70 LTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFG--SLVLLGKGEEMTGGRE 127
Query: 141 VPAVVCGAFRAIFGAIAVDTG 161
PA++ F A GA+ +D G
Sbjct: 128 RPALLADVFEAFIGALYLDQG 148
>gi|52424423|ref|YP_087560.1| ribonuclease III [Mannheimia succiniciproducens MBEL55E]
gi|81387548|sp|Q65VN5.1|RNC_MANSM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|52306475|gb|AAU36975.1| Rnc protein [Mannheimia succiniciproducens MBEL55E]
Length = 224
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ+QI Y FK I LL++A+TH S + ++N L LG +++ +++ L ++ +
Sbjct: 4 LDRLQRQISYEFKDITLLKQALTHRSAATKHNERLEFLGDAILNYTIADALYHQFPKCNE 63
Query: 102 KDLNR 106
+L+R
Sbjct: 64 GELSR 68
>gi|257464706|ref|ZP_05629077.1| ribonuclease III [Actinobacillus minor 202]
gi|257450366|gb|EEV24409.1| ribonuclease III [Actinobacillus minor 202]
Length = 223
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++GY F+++ L +A+TH S + +NN L LG +++ ++ L +K
Sbjct: 3 LERLQKKLGYQFETLDYLTQALTHRSAASKNNERLEFLGDSILNFTIGKALYDKFPKADE 62
Query: 102 KDLNR 106
+L+R
Sbjct: 63 GELSR 67
>gi|452124161|ref|ZP_21936745.1| ribonuclease III [Bordetella holmesii F627]
gi|452127550|ref|ZP_21940131.1| ribonuclease III [Bordetella holmesii H558]
gi|451923391|gb|EMD73532.1| ribonuclease III [Bordetella holmesii F627]
gi|451926830|gb|EMD76960.1| ribonuclease III [Bordetella holmesii H558]
Length = 251
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L TL+ ++G+ F LL +A+TH S +N L LG V++ V+ L + +
Sbjct: 2 SLATLETRLGHHFGDQALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYAKLD 61
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
DL+ RV + S A L L +R+ + P+++ A+FGA+
Sbjct: 62 EGDLS-RVRANLVKQASLADIAQRLDLSLYLRLGEGELKSGGFRRPSILADTVEALFGAV 120
Query: 157 AVDTG 161
+D G
Sbjct: 121 FLDAG 125
>gi|240949696|ref|ZP_04754031.1| ribonuclease III [Actinobacillus minor NM305]
gi|240295954|gb|EER46630.1| ribonuclease III [Actinobacillus minor NM305]
Length = 223
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++GY F+++ L +A+TH S + +NN L LG +++ ++ L +K
Sbjct: 3 LERLQKKLGYQFETLDYLTQALTHRSAASKNNERLEFLGDSILNFTIGKALYDKFPKADE 62
Query: 102 KDLNR 106
+L+R
Sbjct: 63 GELSR 67
>gi|94987013|ref|YP_594946.1| ribonuclease III [Lawsonia intracellularis PHE/MN1-00]
gi|442555847|ref|YP_007365672.1| ribonuclease III [Lawsonia intracellularis N343]
gi|94731262|emb|CAJ54625.1| dsRNA-specific ribonuclease [Lawsonia intracellularis PHE/MN1-00]
gi|441493294|gb|AGC49988.1| ribonuclease III [Lawsonia intracellularis N343]
Length = 233
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN------NRALGILGGYVIDTSVSLRLLNK 95
L+ LQ+ +GY FK LL A+THSS+ EN N L LG V++ +S L +
Sbjct: 3 LKELQEDLGYYFKDEQLLITALTHSSWVNENDVTAEHNERLEFLGDAVLEICISEELFKR 62
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVCGAFRA 151
+ +L R S N ++ + L L + + ++ + ++ A
Sbjct: 63 HPEAREGELTRMRSNLVNTKMLVLL-ARELKLNQYLLLARGEENQGGRQRNTLLADTMEA 121
Query: 152 IFGAIAVDTGKCDDAGDVF 170
+FGA+ VD GD+F
Sbjct: 122 VFGAVFVD-------GDLF 133
>gi|27066029|pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
gi|27066030|pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
Length = 252
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA----------LGILGGYVIDTSVSLR 91
+E QK+ G FK+ LL RA+ HSS++ E N+A L LG V++ V
Sbjct: 21 VEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 80
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNST----VPAVVC 146
L K + DL R S ++ E+ V M+LG K + + T +++
Sbjct: 81 LYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLG--KFLFLGKGEEKTGGRDRDSILA 138
Query: 147 GAFRAIFGAIAVDTG 161
AF A+ AI +D G
Sbjct: 139 DAFEALLAAIYLDQG 153
>gi|347730887|ref|ZP_08863997.1| ribonuclease III [Desulfovibrio sp. A2]
gi|347520393|gb|EGY27528.1| ribonuclease III [Desulfovibrio sp. A2]
Length = 230
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE------ENNRALGILGGYVIDTSVSLRLLNK 95
E LQ I Y F GLL AMTHSS++ E+N L LG V++ VS L +
Sbjct: 2 FENLQTAIHYAFTDAGLLTTAMTHSSWANEQQDHVEHNERLEFLGDAVLELCVSEELFAR 61
Query: 96 DIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVCG 147
DL R VS+ + E++ L L++ +R+ S +++
Sbjct: 62 FPAAREGDLTRMRARLVSKPALAELA-----RELKLEQFLRLGRGEESQGGRERSSLLSD 116
Query: 148 AFRAIFGAIAVDTG 161
A A+ GA+ +D G
Sbjct: 117 ALEAMLGAVFLDGG 130
>gi|253999489|ref|YP_003051552.1| ribonuclease III [Methylovorus glucosetrophus SIP3-4]
gi|313201514|ref|YP_004040172.1| ribonuclease III [Methylovorus sp. MP688]
gi|253986168|gb|ACT51025.1| ribonuclease III [Methylovorus glucosetrophus SIP3-4]
gi|312440830|gb|ADQ84936.1| ribonuclease III [Methylovorus sp. MP688]
Length = 224
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L++ +G+ F + LL +A+TH S S NN L LG V++ ++ +L + + DL
Sbjct: 6 LERLLGHDFTNGQLLTQALTHRSHSARNNERLEFLGDGVLNCIIANQLFQRFSKLPEGDL 65
Query: 105 NRRVSETSNVEISCAV-DGMHLG-LQKVVRVSPKTNST-VPAVVCGAFRAIFGAIAVDTG 161
+R + C + + LG + K+ K+ P+V+ A AI GA+ +D G
Sbjct: 66 SRLRAHLVKEPTLCEIAQRLQLGDMLKLGEGELKSGGWRRPSVLADALEAIIGAVFLDAG 125
>gi|424780882|ref|ZP_18207749.1| Ribonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422842583|gb|EKU27034.1| Ribonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 231
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLNKDI 97
LQ Q FK+ LL+ A THSS++ E+ N L LG V++ VS L +
Sbjct: 8 LQDQYQIQFKNERLLKEAFTHSSYANEHREEQLPCNERLEYLGDAVLELLVSTYLFKEYP 67
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVV-RVSPKTNS-TVPAVVCGAFRAIFG 154
++ L R R + ++ +H + + K N PA++C F A G
Sbjct: 68 ELPEGKLTRFRAAIVKEDSLAYFAKEVHFDEHIFLGKGEEKANGRQRPALLCDLFEAFLG 127
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 128 ALYLDQG 134
>gi|418411653|ref|ZP_12984919.1| ribonuclease 3 [Staphylococcus epidermidis BVS058A4]
gi|420163429|ref|ZP_14670176.1| ribonuclease III [Staphylococcus epidermidis NIHLM095]
gi|420167589|ref|ZP_14674241.1| ribonuclease III [Staphylococcus epidermidis NIHLM087]
gi|394235118|gb|EJD80692.1| ribonuclease III [Staphylococcus epidermidis NIHLM095]
gi|394237617|gb|EJD83103.1| ribonuclease III [Staphylococcus epidermidis NIHLM087]
gi|410891236|gb|EKS39033.1| ribonuclease 3 [Staphylococcus epidermidis BVS058A4]
Length = 245
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
Query: 27 ANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGIL 79
N ++ + F + +G FK+I L ++A +HSSF E+N L L
Sbjct: 2 GNQKKKEMVHDFQQKFTDKMRSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFL 61
Query: 80 GGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPK 136
G V++ +VS L ++ + +L ++ T E S + + L +++ + K
Sbjct: 62 GDAVLELTVSRYLFDRHPHLPEGNLT-KMRATIVCEPSLVIFANKIKLNELILLGKGEEK 120
Query: 137 TNS-TVPAVVCGAFRAIFGAIAVDTG 161
T T P+++ AF A GA+ +D G
Sbjct: 121 TGGRTRPSLISDAFEAFVGALYLDQG 146
>gi|406920540|gb|EKD58587.1| hypothetical protein ACD_56C00093G0011 [uncultured bacterium]
Length = 227
Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
+E+L K+IG F +I LLR+A+TH S+ EN N L LG V++ ++ L N
Sbjct: 2 VESLAKKIGVKFDNIELLRQAVTHRSYLNENRDYALDHNERLEFLGDAVLELIITEYLYN 61
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS----PKTNSTVPAVVCGAFR 150
+ +L S N E+ V +G++K + +S T ++ A
Sbjct: 62 -NFRNPEGELTSWRSALVNGEMLAHV-AQEIGVEKFLLMSRGEAKDTGRARQYLLANALE 119
Query: 151 AIFGAIAVDTG 161
AI GA +D G
Sbjct: 120 AIIGATYLDQG 130
>gi|357055497|ref|ZP_09116565.1| ribonuclease III [Clostridium clostridioforme 2_1_49FAA]
gi|355382616|gb|EHG29713.1| ribonuclease III [Clostridium clostridioforme 2_1_49FAA]
Length = 234
Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRL 92
+ L+ L+++I Y FK+ L +A+THSS++ E+ N L LG V++ S L
Sbjct: 3 SHLKELEERISYEFKNKNLFTQALTHSSYANEHRLDHSRCNERLEFLGDAVLEIVTSEFL 62
Query: 93 LNKDIDISPKDLNR-RVSETSNVEIS-CAVD---GMHLGLQKVVRVSPKTNSTVPAVVCG 147
K + DL + R S ++ CA D G +L L K + N +VV
Sbjct: 63 YRKYETLPEGDLTKIRASIVCEPTLAYCAGDIELGQYLYLGKGEDATGGRNRN--SVVSD 120
Query: 148 AFRAIFGAIAVDTG 161
A A+ GAI +D G
Sbjct: 121 AMEALIGAIYLDGG 134
>gi|283781424|ref|YP_003372179.1| ribonuclease III [Pirellula staleyi DSM 6068]
gi|283439877|gb|ADB18319.1| ribonuclease III [Pirellula staleyi DSM 6068]
Length = 273
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEE---NNRALGILGGYVIDTSVSLRLLNKD 96
+ L ++++GY F S LLR A+TH+S +E +N L LG ++ V L +
Sbjct: 43 SGLARCERRLGYVFNSKPLLRSALTHASGAEHRLASNERLEFLGDAILGVYVCEMLYRQF 102
Query: 97 IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST---VPAVVCGAFRAIF 153
D DL +V +CA LGLQ+ + + +S+ P+++ F ++
Sbjct: 103 PDYLEGDLT-KVKSVVVSRQTCAKVSEALGLQEFLILGKGMSSSPNVPPSLLADVFESLI 161
Query: 154 GAIAVDTGK 162
AI +D G+
Sbjct: 162 AAIYLDGGE 170
>gi|262273710|ref|ZP_06051523.1| ribonuclease III [Grimontia hollisae CIP 101886]
gi|262222125|gb|EEY73437.1| ribonuclease III [Grimontia hollisae CIP 101886]
Length = 224
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
T + LQ++IGYTF LL A+TH S S +N L LG ++ V+ L ++
Sbjct: 1 MTTPMNRLQRRIGYTFNDTTLLSLALTHRSASGNHNERLEFLGDSILSFVVADDLYHRFP 60
Query: 98 DISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
++ D++ R+ T + A G L V+++ P + +++ A AI
Sbjct: 61 NVDEGDMS-RMRATLVRGNTLAELGREFELGDVLQLGPGELKSGGFRRDSILADAVEAII 119
Query: 154 GAIAVDT 160
GAI +D+
Sbjct: 120 GAIYLDS 126
>gi|167046024|gb|ABZ10543.1| dicer-like protein C [Trichoplax adhaerens]
Length = 358
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE-----ENNRALGILGGYVIDTSVSLRLLNKD 96
LE L+K IGY+F++ + RA+THSS+ E+N+ L LG ++ ++ N
Sbjct: 188 LERLEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFFNSH 247
Query: 97 IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV 131
D P L+ N + AV G+ +G+ K V
Sbjct: 248 PDAKPAKLHDFQEAIVNNK-CLAVIGIAIGVSKYV 281
>gi|374323432|ref|YP_005076561.1| ribonuclease iii [Paenibacillus terrae HPL-003]
gi|357202441|gb|AET60338.1| ribonuclease iii [Paenibacillus terrae HPL-003]
Length = 232
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
L+ LQ+++ F + LL++A TH+S+ E +N L LG V++ +VS +L N
Sbjct: 5 LKQLQQKLHIQFNNRQLLKQAFTHASYVNEHRFSQHADNERLEFLGDAVLELTVSEQLYN 64
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
+ + +L + V E S V+ + ++ G ++ L K ++ T PA++ F
Sbjct: 65 QYPNRPEGELTKLRAAIVCEPSLVKFAVGLEFGQYVLLGKGEELT--GGRTRPALLADVF 122
Query: 150 RAIFGAIAVDTG 161
A GA+ +D G
Sbjct: 123 EAFVGALYLDQG 134
>gi|170709347|ref|ZP_02899762.1| ribonuclease III [Bacillus anthracis str. A0389]
gi|170125742|gb|EDS94654.1| ribonuclease III [Bacillus anthracis str. A0389]
Length = 245
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALG 77
R +++++T + A + Q++IG TF LL +A THSS+ E+N L
Sbjct: 4 RKYREKKYETK--YREAFKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLE 61
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVR 132
LG V++ +VS L K +S +L + V E S V + + G + L K
Sbjct: 62 FLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEE 121
Query: 133 VSPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
++ PA++ F A GA +D G
Sbjct: 122 MT--GGRERPALLADVFEAFIGAFYLDQG 148
>gi|392971835|ref|ZP_10337227.1| ribonuclease III [Staphylococcus equorum subsp. equorum Mu2]
gi|403046841|ref|ZP_10902310.1| ribonuclease III [Staphylococcus sp. OJ82]
gi|392509548|emb|CCI60517.1| ribonuclease III [Staphylococcus equorum subsp. equorum Mu2]
gi|402763537|gb|EJX17630.1| ribonuclease III [Staphylococcus sp. OJ82]
Length = 244
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 28 NDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILG 80
N ++ + F +++ FK I L ++A +HSSF E+N L LG
Sbjct: 3 NYKKIEMVKAFEKKFAQKMQELDLNFKQIELYQQAFSHSSFINDFNMNRLEHNERLEFLG 62
Query: 81 GYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKT 137
V++ +VS L +K ++ +L ++ T E S + + + +++ + KT
Sbjct: 63 DAVLELTVSRYLFDKYPELPEGNLT-KMRATIVCEPSLVIFAKKIQINELILLGKGEEKT 121
Query: 138 NS-TVPAVVCGAFRAIFGAIAVDTG 161
T P++V AF A GA+ +D G
Sbjct: 122 GGRTRPSLVSDAFEAFVGALYLDQG 146
>gi|311104757|ref|YP_003977610.1| ribonuclease III [Achromobacter xylosoxidans A8]
gi|310759446|gb|ADP14895.1| ribonuclease III [Achromobacter xylosoxidans A8]
Length = 253
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L TL+ ++ + F LL +A+TH S +N L LG V++ V+ L + I
Sbjct: 2 SLATLENRLDHHFSDPALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYSKID 61
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
DL+R + + S A L L + +R+ + P+++ A+FGA+
Sbjct: 62 EGDLSRLRANLVK-QASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALFGAV 120
Query: 157 AVDTGKCDDAGDVFLR 172
+D G D A V +R
Sbjct: 121 FLDAG-FDAARRVIVR 135
>gi|158320491|ref|YP_001512998.1| ribonuclease III [Alkaliphilus oremlandii OhILAs]
gi|158140690|gb|ABW19002.1| Ribonuclease III [Alkaliphilus oremlandii OhILAs]
Length = 241
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
++ QK IGY FK++ ++ A+THSS++ E NN L LG V+ VS +
Sbjct: 11 IKEFQKIIGYQFKNLSIINEALTHSSYTNEYRKKQVQNNERLEFLGDSVLGIVVSEYIYL 70
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVP----AVVCGAFR 150
K D+ +L ++ E S + L + + + +T +++ AF
Sbjct: 71 KYKDLPEGELT-KIRANVVCEPSLGNQAKEIKLGQYLLLGKGEEATGGRDRVSILADAFE 129
Query: 151 AIFGAIAVDTG 161
A+ GA+ +D G
Sbjct: 130 AVIGALYLDGG 140
>gi|388543300|ref|ZP_10146591.1| ribonuclease III [Pseudomonas sp. M47T1]
gi|388278612|gb|EIK98183.1| ribonuclease III [Pseudomonas sp. M47T1]
Length = 229
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGESLFERFPQ 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLAVLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|308068621|ref|YP_003870226.1| ribonuclease III [Paenibacillus polymyxa E681]
gi|310641509|ref|YP_003946267.1| ribonuclease iii [Paenibacillus polymyxa SC2]
gi|386040540|ref|YP_005959494.1| ribonuclease III [Paenibacillus polymyxa M1]
gi|305857900|gb|ADM69688.1| Ribonuclease III (RNase III) [Paenibacillus polymyxa E681]
gi|309246459|gb|ADO56026.1| Ribonuclease III [Paenibacillus polymyxa SC2]
gi|343096578|emb|CCC84787.1| ribonuclease III [Paenibacillus polymyxa M1]
Length = 232
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
L+ LQ+++ F + LL++A TH+S+ E +N L LG V++ +VS +L N
Sbjct: 5 LKQLQQKLHIQFNNRQLLKQAFTHASYVNEHRFSQHADNERLEFLGDAVLELTVSEQLYN 64
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
+ + +L + V E S V+ + ++ G ++ L K ++ T PA++ F
Sbjct: 65 QYPNRPEGELTKLRAAIVCEPSLVKFAVGLEFGQYVLLGKGEELT--GGRTRPALLADVF 122
Query: 150 RAIFGAIAVDTG 161
A GA+ +D G
Sbjct: 123 EAFVGALYLDQG 134
>gi|359475987|ref|XP_002280293.2| PREDICTED: endoribonuclease Dicer homolog 3a-like [Vitis vinifera]
Length = 1648
Score = 44.3 bits (103), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 32 FKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN----NRALGILGGYVIDTS 87
+T P A +E L+ +IGY F GLL A+TH++ E + L LG V+D
Sbjct: 1246 LRTYIPKANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVL 1305
Query: 88 VSLRLLNKDIDISPKDLNRRVSETSNVE 115
++ L DI P +L S + N E
Sbjct: 1306 ITWHLYQSHRDIDPGELTDLRSASVNNE 1333
>gi|410090612|ref|ZP_11287204.1| ribonuclease III [Pseudomonas viridiflava UASWS0038]
gi|409762119|gb|EKN47148.1| ribonuclease III [Pseudomonas viridiflava UASWS0038]
Length = 229
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPQ 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLALLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|312879974|ref|ZP_07739774.1| ribonuclease III [Aminomonas paucivorans DSM 12260]
gi|310783265|gb|EFQ23663.1| ribonuclease III [Aminomonas paucivorans DSM 12260]
Length = 232
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 57/133 (42%), Gaps = 26/133 (19%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTSVSLRLLNKDIDI 99
L + + Y F LL A+TH+SF+ E+ N L LG V++ VS RL + D
Sbjct: 11 LGRALRYRFHRQELLTEALTHASFANESGLSRCNERLEFLGDAVLELCVSERLYRERPDA 70
Query: 100 SPKDLNRRVSETSNVEISCAVD----GMHLGLQKVV-------RVSPKTNSTVPAVVCGA 148
DL R S + CA + G G+ + R P N +V A
Sbjct: 71 EEGDLTRWRS-----ALVCAPNLARWGRLWGIPACLLLGKGFRRGGPNEN-----MVADA 120
Query: 149 FRAIFGAIAVDTG 161
F A+ GAI +D G
Sbjct: 121 FEAVLGAIYLDGG 133
>gi|375308186|ref|ZP_09773473.1| ribonuclease III [Paenibacillus sp. Aloe-11]
gi|390454105|ref|ZP_10239633.1| ribonuclease III [Paenibacillus peoriae KCTC 3763]
gi|375080517|gb|EHS58738.1| ribonuclease III [Paenibacillus sp. Aloe-11]
Length = 232
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
L+ LQ+++ F + LL++A TH+S+ E +N L LG V++ +VS +L N
Sbjct: 5 LKQLQQKLHIQFNNRQLLKQAFTHASYVNEHRFSQHADNERLEFLGDAVLELTVSEQLYN 64
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
+ + +L + V E S V+ + ++ G ++ L K ++ T PA++ F
Sbjct: 65 QYPNRPEGELTKLRAAIVCEPSLVKFAVGLEFGQYVLLGKGEELT--GGRTRPALLADVF 122
Query: 150 RAIFGAIAVDTG 161
A GA+ +D G
Sbjct: 123 EAFVGALYLDQG 134
>gi|422644255|ref|ZP_16707393.1| ribonuclease III [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330957807|gb|EGH58067.1| ribonuclease III [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 229
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPQ 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLALLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|89098685|ref|ZP_01171567.1| Rnc [Bacillus sp. NRRL B-14911]
gi|89086647|gb|EAR65766.1| Rnc [Bacillus sp. NRRL B-14911]
Length = 259
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 29 DQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGG 81
DQ K QK+IG +F++ LL++A THSS+ E+N L LG
Sbjct: 7 DQEKKAYRAAEMQFREFQKKIGISFENEKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGD 66
Query: 82 YVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST- 140
V++ +VS L K +S +L ++ E S L K+V + T
Sbjct: 67 AVLELTVSQFLYKKYPMMSEGELT-KLRAAVVCEPSLVTFANELEFGKLVLLGKGEEMTG 125
Query: 141 ---VPAVVCGAFRAIFGAIAVDTGKCDDAG----DVFLRVHSGEVGKALPF 184
PA++ F A GA+ ++ G G VF +++SG + F
Sbjct: 126 GRERPALLADVFEAFIGALYLEKGIDTVIGFLEQTVFPKINSGAFSHVMDF 176
>gi|116748321|ref|YP_845008.1| ribonuclease III [Syntrophobacter fumaroxidans MPOB]
gi|189043370|sp|A0LGM1.1|RNC_SYNFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116697385|gb|ABK16573.1| RNAse III [Syntrophobacter fumaroxidans MPOB]
Length = 242
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 21/163 (12%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLR 91
+ LE LQ +GY F GLL RA+ H S+ EN N L LG V+ ++S
Sbjct: 4 SDGLEALQNLLGYRFGDEGLLHRALVHRSYLHENPHLDEKDNETLEFLGDAVLGLAISHF 63
Query: 92 LLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVC 146
LL + D + +L+R V+E I+ ++ G +L L K ++ +++
Sbjct: 64 LLEQFPDYNEGELSRLRSAIVNERELTRIAVELNLGEYLLLGKGEEMTGGRRKA--SLLA 121
Query: 147 GAFRAIFGAIAVDTGKCDDAG------DVFLRVHSGE-VGKAL 182
+ A+ +I +D G G DV+LR E V KAL
Sbjct: 122 DSLEALLASIYLDGGLDAVLGVIKKLFDVYLRFEKREHVLKAL 164
>gi|37681015|ref|NP_935624.1| ribonuclease III [Vibrio vulnificus YJ016]
gi|37199765|dbj|BAC95595.1| dsRNA-specific ribonuclease [Vibrio vulnificus YJ016]
Length = 259
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 28 NDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTS 87
+D R +SP +E L +Q+GY F+ LL A+TH S + ++N L LG ++
Sbjct: 29 DDYRKSMNSP----IEKLTRQLGYQFQDDELLNLALTHRSANSKHNERLEFLGDSILSFV 84
Query: 88 VSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPA 143
++ L ++ ++ D++ R+ T + A G GL +++ P + +
Sbjct: 85 IADELYHRFPKVNEGDMS-RMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDS 143
Query: 144 VVCGAFRAIFGAIAVDT 160
++ A AI GA+ +D+
Sbjct: 144 ILADAVEAIIGAVYLDS 160
>gi|296081735|emb|CBI20740.3| unnamed protein product [Vitis vinifera]
Length = 1688
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 32 FKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN----NRALGILGGYVIDTS 87
+T P A +E L+ +IGY F GLL A+TH++ E + L LG V+D
Sbjct: 1256 LRTYIPKANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVL 1315
Query: 88 VSLRLLNKDIDISPKDLNRRVSETSNVE 115
++ L DI P +L S + N E
Sbjct: 1316 ITWHLYQSHRDIDPGELTDLRSASVNNE 1343
>gi|258544604|ref|ZP_05704838.1| ribonuclease III [Cardiobacterium hominis ATCC 15826]
gi|258520146|gb|EEV89005.1| ribonuclease III [Cardiobacterium hominis ATCC 15826]
Length = 221
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
+ L++ + Y F LL RA+TH S S ++N L LG +++T S+ + D+
Sbjct: 1 MHPLEQALNYRFTDTALLTRALTHRSHSAKHNERLEFLGDALLETISSIWIYQNRRDVPE 60
Query: 102 KDLNRRVSETSNVEISCAV-------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL R + + E A+ +HLG ++ + NS ++ A A+
Sbjct: 61 GDLTRLRATIVSGENLAAIARRLNLGQHLHLGSGELKSGGARRNS----ILADAVEALIA 116
Query: 155 AIAVDT 160
A+ +D+
Sbjct: 117 AVYLDS 122
>gi|145635204|ref|ZP_01790908.1| ribonuclease III [Haemophilus influenzae PittAA]
gi|229845360|ref|ZP_04465491.1| ribonuclease III [Haemophilus influenzae 6P18H1]
gi|145267483|gb|EDK07483.1| ribonuclease III [Haemophilus influenzae PittAA]
gi|229811668|gb|EEP47366.1| ribonuclease III [Haemophilus influenzae 6P18H1]
Length = 227
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ L+++IGY F +I LL++A+TH S + ++N L LG +++ +++ L ++ +
Sbjct: 4 LDRLERKIGYCFNNIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNE 63
Query: 102 KDLNRRVSETSNVEISCAV--------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+ R+ T E + A+ D M LG ++ + S + V AI
Sbjct: 64 GELS-RMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCV----EAII 118
Query: 154 GAIAVDTG 161
GA+++D G
Sbjct: 119 GAMSLDQG 126
>gi|71737399|ref|YP_276084.1| ribonuclease III [Pseudomonas syringae pv. phaseolicola 1448A]
gi|90101635|sp|Q48EV3.1|RNC_PSE14 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|71557952|gb|AAZ37163.1| ribonuclease III [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 229
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPQ 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLALLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62]
gi|254040617|gb|ACT57413.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62]
Length = 227
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFS---EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
TL+K+IGY F + LL +A+THSS S +E+ L LG ++ +S L N
Sbjct: 8 TLEKRIGYAFANRSLLEKALTHSSISHSYQESYERLEFLGDRILGLLISTLLFNHFDSAK 67
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTV----PAVVCGAFRAIFGAI 156
+L+ R + + E +C+ L L +RVS V ++ ++ A+
Sbjct: 68 EGELSVRFNSLVSAE-TCSQVARELDLASFIRVSSDLRKDVCSFMTSIQADVVESLIAAL 126
Query: 157 AVDTG 161
+D G
Sbjct: 127 YLDGG 131
>gi|66047178|ref|YP_237019.1| ribonuclease III [Pseudomonas syringae pv. syringae B728a]
gi|257486563|ref|ZP_05640604.1| ribonuclease III [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|289628144|ref|ZP_06461098.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. NCPPB 3681]
gi|289649890|ref|ZP_06481233.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. 2250]
gi|289676656|ref|ZP_06497546.1| ribonuclease III [Pseudomonas syringae pv. syringae FF5]
gi|302186917|ref|ZP_07263590.1| ribonuclease III [Pseudomonas syringae pv. syringae 642]
gi|422585904|ref|ZP_16660960.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|422598759|ref|ZP_16673015.1| ribonuclease III [Pseudomonas syringae pv. lachrymans str. M301315]
gi|422618136|ref|ZP_16686835.1| ribonuclease III [Pseudomonas syringae pv. japonica str. M301072]
gi|422637660|ref|ZP_16701092.1| ribonuclease III [Pseudomonas syringae Cit 7]
gi|422675313|ref|ZP_16734658.1| ribonuclease III [Pseudomonas syringae pv. aceris str. M302273]
gi|422680701|ref|ZP_16738972.1| ribonuclease III [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|440722754|ref|ZP_20903129.1| ribonuclease III [Pseudomonas syringae BRIP34876]
gi|440725674|ref|ZP_20905938.1| ribonuclease III [Pseudomonas syringae BRIP34881]
gi|440742167|ref|ZP_20921496.1| ribonuclease III [Pseudomonas syringae BRIP39023]
gi|443642588|ref|ZP_21126438.1| Ribonuclease III [Pseudomonas syringae pv. syringae B64]
gi|75500898|sp|Q4ZPE1.1|RNC_PSEU2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|63257885|gb|AAY38981.1| RNAse III [Pseudomonas syringae pv. syringae B728a]
gi|298156750|gb|EFH97841.1| Ribonuclease III [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|330871241|gb|EGH05950.1| ribonuclease III [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330898515|gb|EGH29934.1| ribonuclease III [Pseudomonas syringae pv. japonica str. M301072]
gi|330950056|gb|EGH50316.1| ribonuclease III [Pseudomonas syringae Cit 7]
gi|330973032|gb|EGH73098.1| ribonuclease III [Pseudomonas syringae pv. aceris str. M302273]
gi|330989032|gb|EGH87135.1| ribonuclease III [Pseudomonas syringae pv. lachrymans str. M301315]
gi|331010046|gb|EGH90102.1| ribonuclease III [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|440360810|gb|ELP98066.1| ribonuclease III [Pseudomonas syringae BRIP34876]
gi|440368469|gb|ELQ05505.1| ribonuclease III [Pseudomonas syringae BRIP34881]
gi|440377990|gb|ELQ14624.1| ribonuclease III [Pseudomonas syringae BRIP39023]
gi|443282605|gb|ELS41610.1| Ribonuclease III [Pseudomonas syringae pv. syringae B64]
Length = 229
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPQ 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLALLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|422651442|ref|ZP_16714237.1| ribonuclease III [Pseudomonas syringae pv. actinidiae str. M302091]
gi|330964520|gb|EGH64780.1| ribonuclease III [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 227
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 2 SVSLSRLERQLGYTFKDQELMILALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPQ 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLALLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|170289493|ref|YP_001739731.1| ribonuclease III [Thermotoga sp. RQ2]
gi|238688867|sp|B1LCY9.1|RNC_THESQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|170176996|gb|ACB10048.1| Ribonuclease III [Thermotoga sp. RQ2]
Length = 240
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA----------LGILGGYVIDTSVSLR 91
+E QK+ G FK+ LL RA+ HSS++ E N+A L LG V++ V
Sbjct: 9 VEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEI 68
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNST----VPAVVC 146
L K + DL R S ++ E+ V M+LG K + + T +++
Sbjct: 69 LYKKYPEAEVGDLARVKSAAASEEVLALVSRKMNLG--KFLFLGKGEEKTGGRDRDSILA 126
Query: 147 GAFRAIFGAIAVDTG 161
AF A+ AI +D G
Sbjct: 127 DAFEALLAAIYLDQG 141
>gi|226940389|ref|YP_002795463.1| ribonuclease III [Laribacter hongkongensis HLHK9]
gi|226715316|gb|ACO74454.1| Rnc [Laribacter hongkongensis HLHK9]
Length = 238
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 32 FKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLR 91
+T P ++ L + IG+ F S LL+ A+TH S+ + NN +G +++ +++
Sbjct: 1 MRTPQP----IDRLMQHIGHLFTSPALLKEALTHRSYGQPNNERFEFVGDGILNYTIARM 56
Query: 92 LLNKDIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVC 146
L + ++S L+R V++ + EI+ + G L L R S + P+++
Sbjct: 57 LFDAFPELSEGQLSRLRANLVNQATLAEIARELTLGDCLFLGDGERKSGGHDR--PSILA 114
Query: 147 GAFRAIFGAIAVDT 160
A AIF A+ +D
Sbjct: 115 DAMEAIFAAVCLDA 128
>gi|254442236|ref|ZP_05055712.1| ribonuclease III [Verrucomicrobiae bacterium DG1235]
gi|198256544|gb|EDY80852.1| ribonuclease III [Verrucomicrobiae bacterium DG1235]
Length = 263
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 12/160 (7%)
Query: 11 LPVLVIAISSSFQVRAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-- 68
L L+ ++S +AA T P A ++ L+ ++GYTFK+ GLL +++TH SF
Sbjct: 6 LKRLIKSVSKDSDKKAARLSANATELPQAK-VKRLENKLGYTFKTKGLLHQSLTHPSFLL 64
Query: 69 ----SEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMH 124
+NN+ L LG VI ++ +L K + L S + + +
Sbjct: 65 NTKDQLKNNQRLEFLGDSVIQLVLTEKLYEKFPSLREGKLTSIRSGYARGDYMAGI-ARE 123
Query: 125 LGLQKVVRVSPKT-NSTVP---AVVCGAFRAIFGAIAVDT 160
L L + + PK N+ V + + AF A+ GAI +D+
Sbjct: 124 LKLGDYLILKPKDRNAGVAENDSALGDAFEALIGAIYLDS 163
>gi|126208025|ref|YP_001053250.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|189043287|sp|A3MZQ9.1|RNC_ACTP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|126096817|gb|ABN73645.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
Length = 223
Score = 44.3 bits (103), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++ Y F ++ L +A+TH S +NN L LG +++ ++ L K +
Sbjct: 3 LERLQKKLSYQFTNLDYLLQALTHRSAGAKNNERLEFLGDSILNFAIGKALFEKFPKANE 62
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A+ GL + +R+ + +++ AI AI
Sbjct: 63 GELS-RMRATLVREQTLAILARQFGLGEYMRLGAGELKSGGYRRESILSDCVEAIIAAIY 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDAG 125
>gi|389683135|ref|ZP_10174467.1| ribonuclease III [Pseudomonas chlororaphis O6]
gi|425897700|ref|ZP_18874291.1| ribonuclease III [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|388552648|gb|EIM15909.1| ribonuclease III [Pseudomonas chlororaphis O6]
gi|397891970|gb|EJL08448.1| ribonuclease III [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
Length = 229
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPQ 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLAVLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|118594601|ref|ZP_01551948.1| ribonuclease III [Methylophilales bacterium HTCC2181]
gi|118440379|gb|EAV47006.1| ribonuclease III [Methylophilales bacterium HTCC2181]
Length = 243
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +E ++ +G+TFK L++ A+TH S ENN L LG +++ V+ L +
Sbjct: 17 SNQIEQIESILGHTFKDKALIKIALTHRSAKGENNERLEFLGDGILNFIVAELLYVRFQQ 76
Query: 99 ISPKDLNRRVSETSNVEISCAV-------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRA 151
+S DL+R S+ C + D + LG ++ + P+++ + A
Sbjct: 77 LSEGDLSRLRSQLVKESTLCDIAKNLTIGDFLLLGEGELKSAGWRR----PSILADSLEA 132
Query: 152 IFGAIAVDTG 161
I AI +D G
Sbjct: 133 IIAAIYLDDG 142
>gi|365919897|ref|ZP_09444257.1| ribonuclease III [Cardiobacterium valvarum F0432]
gi|364578737|gb|EHM55931.1| ribonuclease III [Cardiobacterium valvarum F0432]
Length = 221
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
+ ++K +GYTF+ L RA+TH S S ++N L LG +++T S+ + N +
Sbjct: 1 MHPIEKALGYTFRDPDHLTRALTHRSHSAKHNERLEYLGDALLETISSIWIYNNRPAVPE 60
Query: 102 KDLNRR----VSETSNVEISCAVD-GMHLGL 127
DL R V E S V ++ ++ G HL L
Sbjct: 61 GDLTRLRATIVKEDSLVGVARRLNLGEHLRL 91
>gi|336233266|ref|YP_004590012.1| ribonuclease III [Buchnera aphidicola (Cinara tujafilina)]
gi|335345207|gb|AEH39753.1| ribonuclease III [Buchnera aphidicola (Cinara tujafilina)]
Length = 226
Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ ++ LQK +GYTF +I LL A+TH S S ++N L LG +++ ++ +L + +
Sbjct: 3 SIVMDKLQKFMGYTFTNISLLHHALTHRSASIKHNERLEFLGDSILNFIIAKKLYHYFPE 62
Query: 99 ISPKDLNRR----VSETSNVEISCAVD-GMHL----GLQK---VVRVSPKTNSTVPAVVC 146
++ ++R V + EI+C G +L G QK R S N T+ A++
Sbjct: 63 VNEGGMSRMRATLVRGNTLAEIACEFSLGNYLQLGQGEQKSGGFKRESILAN-TIEAIIA 121
Query: 147 GAF 149
G F
Sbjct: 122 GIF 124
>gi|254283270|ref|ZP_04958238.1| ribonuclease III [gamma proteobacterium NOR51-B]
gi|219679473|gb|EED35822.1| ribonuclease III [gamma proteobacterium NOR51-B]
Length = 222
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
++L++ IGY F+ LL+RA+TH S S NN L LG VI+ V+ L K D
Sbjct: 4 QSLEQAIGYHFRDSTLLQRALTHRSASRANNERLEFLGDSVINHIVAEALFLKFPDADEG 63
Query: 103 DLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIAVD 159
L R R ++ G+ L ++ + + +++ A AI GA+ +D
Sbjct: 64 QLTRLRAILVRGEYLAGLAHGLELADALILGAGERKSGGRQRRSILADAVEAIAGAMLID 123
Query: 160 T 160
+
Sbjct: 124 S 124
>gi|254459764|ref|ZP_05073180.1| ribonuclease III [Rhodobacterales bacterium HTCC2083]
gi|206676353|gb|EDZ40840.1| ribonuclease III [Rhodobacteraceae bacterium HTCC2083]
Length = 228
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE---NNRALGILGGYVIDTSVSLRLLNKDID 98
L+ LQK+I Y F+ LL A+THSS S +N+ L LG V+ ++ LL D+
Sbjct: 7 LQALQKRIDYRFEQGELLTEAVTHSSMSSPSRGDNQRLEFLGDRVLGLVMAEALLGADVK 66
Query: 99 ISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVP----AVVCGAFRAIFG 154
S L R + E +CA +GL V+R+ + A++ A+
Sbjct: 67 ASEGQLAPRYNALVRKE-TCADVARDIGLGDVLRLGRSEMKSGGRRKLALLGDGMEALIA 125
Query: 155 AIAVDTG 161
A+ VD G
Sbjct: 126 AVYVDGG 132
>gi|28871359|ref|NP_793978.1| ribonuclease III [Pseudomonas syringae pv. tomato str. DC3000]
gi|213971119|ref|ZP_03399238.1| ribonuclease III [Pseudomonas syringae pv. tomato T1]
gi|237798713|ref|ZP_04587174.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
gi|237806146|ref|ZP_04592850.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
gi|301381864|ref|ZP_07230282.1| ribonuclease III [Pseudomonas syringae pv. tomato Max13]
gi|302063246|ref|ZP_07254787.1| ribonuclease III [Pseudomonas syringae pv. tomato K40]
gi|302132832|ref|ZP_07258822.1| ribonuclease III [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|422299810|ref|ZP_16387360.1| ribonuclease III [Pseudomonas avellanae BPIC 631]
gi|422657043|ref|ZP_16719486.1| ribonuclease III [Pseudomonas syringae pv. lachrymans str. M302278]
gi|37999381|sp|Q87XG1.1|RNC_PSESM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|28854610|gb|AAO57673.1| ribonuclease III [Pseudomonas syringae pv. tomato str. DC3000]
gi|213924108|gb|EEB57684.1| ribonuclease III [Pseudomonas syringae pv. tomato T1]
gi|331015601|gb|EGH95657.1| ribonuclease III [Pseudomonas syringae pv. lachrymans str. M302278]
gi|331021566|gb|EGI01623.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331027259|gb|EGI07314.1| ribonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
gi|407988176|gb|EKG30788.1| ribonuclease III [Pseudomonas avellanae BPIC 631]
Length = 229
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 2 SVSLSRLERQLGYTFKDQELMILALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPQ 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLALLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|260583707|ref|ZP_05851455.1| ribonuclease III [Granulicatella elegans ATCC 700633]
gi|260158333|gb|EEW93401.1| ribonuclease III [Granulicatella elegans ATCC 700633]
Length = 234
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGI-------LGGYVIDTSVSLRLLNK 95
E + K+ FK+ L+ A+THSS++ E+ GI LG V++ +S L +
Sbjct: 9 EKIAKEFQIQFKNENYLKEALTHSSYANEHKDCKGIYNERIEFLGDAVLELFISNWLYRQ 68
Query: 96 DIDISPKDLNRRVSET------SNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
+L + ++ S + C +D +L L K R S + PAV+C F
Sbjct: 69 MPTKKEGELTKLRAQIVCEESLSTLAKECELD-KYLLLGKGERASKGHEN--PAVLCDVF 125
Query: 150 RAIFGAIAVDTG 161
A GAI +D G
Sbjct: 126 EAFVGAIYLDQG 137
>gi|336314846|ref|ZP_08569761.1| ribonuclease III [Rheinheimera sp. A13L]
gi|335880905|gb|EGM78789.1| ribonuclease III [Rheinheimera sp. A13L]
Length = 224
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L K++GY F+ + LL +A+TH S E+N L LG ++ ++ L DL
Sbjct: 8 LMKKLGYQFQQVALLEQALTHRSCKGEHNERLEFLGDAILSMVIAEALYIHFPKAREGDL 67
Query: 105 NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDT 160
R S ++ A L L + +R+ P + ++ A AI GAI +D
Sbjct: 68 TRMRSSLVK-GVTLAEIAKELELAEFLRLGPGEMKSGGLRRESIQADAVEAILGAIFLDA 126
Query: 161 G 161
G
Sbjct: 127 G 127
>gi|335043305|ref|ZP_08536332.1| hypothetical protein MAMP_02795 [Methylophaga aminisulfidivorans
MP]
gi|333789919|gb|EGL55801.1| hypothetical protein MAMP_02795 [Methylophaga aminisulfidivorans
MP]
Length = 227
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Query: 47 KQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNR 106
KQ+ FK I L++A+TH S +NN L LG ++ ++ L N+ + L+R
Sbjct: 11 KQLKVEFKDIAFLQQALTHRSADPKNNERLEYLGDAILSFVIAEELFNRFPQVKEGKLSR 70
Query: 107 RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDTGK 162
+ E + A G L L V+ + P + +++ A AI GA+ +D+G
Sbjct: 71 LRASLVKGE-TLAELGRELKLGDVLILGPGELKSGGFRRESILADAVEAILGALYLDSG- 128
Query: 163 CDDAGDVFLRV 173
D+ LR+
Sbjct: 129 LTPVKDLILRL 139
>gi|68248565|ref|YP_247677.1| ribonuclease III [Haemophilus influenzae 86-028NP]
gi|145629132|ref|ZP_01784931.1| ribonuclease III [Haemophilus influenzae 22.1-21]
gi|145633429|ref|ZP_01789159.1| ribonuclease III [Haemophilus influenzae 3655]
gi|145636782|ref|ZP_01792448.1| ribonuclease III [Haemophilus influenzae PittHH]
gi|145639697|ref|ZP_01795300.1| ribonuclease III [Haemophilus influenzae PittII]
gi|148825705|ref|YP_001290458.1| ribonuclease III [Haemophilus influenzae PittEE]
gi|229846933|ref|ZP_04467039.1| ribonuclease III [Haemophilus influenzae 7P49H1]
gi|260582072|ref|ZP_05849867.1| ribonuclease III [Haemophilus influenzae NT127]
gi|81337008|sp|Q4QPN0.1|RNC_HAEI8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043319|sp|A5UBC4.1|RNC_HAEIE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|68056764|gb|AAX87017.1| ribonuclease III [Haemophilus influenzae 86-028NP]
gi|144978635|gb|EDJ88358.1| ribonuclease III [Haemophilus influenzae 22.1-21]
gi|144985992|gb|EDJ92594.1| ribonuclease III [Haemophilus influenzae 3655]
gi|145270080|gb|EDK10017.1| ribonuclease III [Haemophilus influenzae PittHH]
gi|145271254|gb|EDK11168.1| ribonuclease III [Haemophilus influenzae PittII]
gi|148715865|gb|ABQ98075.1| ribonuclease III [Haemophilus influenzae PittEE]
gi|229810017|gb|EEP45737.1| ribonuclease III [Haemophilus influenzae 7P49H1]
gi|260094962|gb|EEW78855.1| ribonuclease III [Haemophilus influenzae NT127]
gi|309750667|gb|ADO80651.1| RNase III, dsRNA [Haemophilus influenzae R2866]
Length = 227
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ L+++IGY F I LL++A+TH S + ++N L LG +++ +++ L ++ +
Sbjct: 4 LDRLERKIGYCFNDIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNE 63
Query: 102 KDLNRRVSETSNVEISCAV--------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+ R+ T E + A+ D M LG ++ + S + V AI
Sbjct: 64 GELS-RMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCV----EAII 118
Query: 154 GAIAVDTG 161
GA+++D G
Sbjct: 119 GAMSLDQG 126
>gi|392957494|ref|ZP_10323017.1| ribonuclease III [Bacillus macauensis ZFHKF-1]
gi|391876457|gb|EIT85054.1| ribonuclease III [Bacillus macauensis ZFHKF-1]
Length = 261
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSLRLLNKDI 97
LQ++I F LL +A THSS+ E+N L LG V++ ++S L K
Sbjct: 39 LQEKISLYFVDEKLLVQAFTHSSYVNEHRGRPYEDNERLEFLGDAVLELTISQFLYKKYP 98
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS---TVPAVVCGAFRAIF 153
+S +L + R + + + +H G V+ + N+ T PA++ F A
Sbjct: 99 TMSEGELTKLRAAIVCEPSLVLLANELHFG-DYVLLGKGEENTGGRTRPALLADVFEAFI 157
Query: 154 GAIAVDTGKCDDAGDVFLRVH 174
GA+ +D G DA FL +H
Sbjct: 158 GALYLDKG--IDAVKAFLEIH 176
>gi|395500584|ref|ZP_10432163.1| ribonuclease III [Pseudomonas sp. PAMC 25886]
gi|395799172|ref|ZP_10478454.1| ribonuclease III [Pseudomonas sp. Ag1]
gi|421139255|ref|ZP_15599297.1| ribonuclease III [Pseudomonas fluorescens BBc6R8]
gi|395336859|gb|EJF68718.1| ribonuclease III [Pseudomonas sp. Ag1]
gi|404509630|gb|EKA23558.1| ribonuclease III [Pseudomonas fluorescens BBc6R8]
Length = 229
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L N+
Sbjct: 1 MSVSLSRLERQLGYTFKDQELMILALTHRSFAGRNNERLEFLGDAILNFVAGEALFNRFP 60
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
L+R R ++ G LG +R+ + +++ A A+
Sbjct: 61 LAREGQLSRLRARLVKGETLAVLARGFDLG--DYLRLGSGELKSGGFRRESILADALEAL 118
Query: 153 FGAIAVDTG 161
GAI +D G
Sbjct: 119 IGAIYLDAG 127
>gi|224368198|ref|YP_002602361.1| two domain fusion protein Includes: metal-dependent phosphoesterase
/ ribonuclease III [Desulfobacterium autotrophicum HRM2]
gi|223690914|gb|ACN14197.1| two domain fusion protein Includes: metal-dependent phosphoesterase
/ ribonuclease III [Desulfobacterium autotrophicum HRM2]
Length = 520
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
LE L+K +G+TF + LL A+ HSS+ E +N+ L +G V+ ++ L+
Sbjct: 293 LEILEKNLGHTFANRELLENALRHSSYVNELQANQVPDNQRLEFMGDAVLGLTIGQILME 352
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
+ ++ L++ VSE + ++ +D G + L K R+S S +++ AF
Sbjct: 353 EHPGMNEGSLSKARAALVSEPALASMARQIDLGRFIRLGKGERLS--RGSEKNSILADAF 410
Query: 150 RAIFGAIAVDTG 161
A+ AI +D G
Sbjct: 411 EAVMAAIYLDCG 422
>gi|152976215|ref|YP_001375732.1| ribonuclease III [Bacillus cytotoxicus NVH 391-98]
gi|189043291|sp|A7GRH9.1|RNC_BACCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|152024967|gb|ABS22737.1| Ribonuclease III [Bacillus cytotoxicus NVH 391-98]
Length = 245
Score = 43.9 bits (102), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 33 KTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALGILGGYVID 85
K + + A Q+++G TF + LL +A THSS+ E+N L LG V++
Sbjct: 10 KYEAKYREAFRAFQQKLGITFTNEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLE 69
Query: 86 TSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNST 140
+VS L K +S +L + V E S V + + G + L K ++
Sbjct: 70 LTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMT--GGRE 127
Query: 141 VPAVVCGAFRAIFGAIAVDTG 161
PA++ F A GA+ +D G
Sbjct: 128 RPALLADVFEAFIGALYLDQG 148
>gi|32266198|ref|NP_860230.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
gi|81666107|sp|Q7VIA9.1|RNC_HELHP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|32262248|gb|AAP77296.1| ribonuclease III [Helicobacter hepaticus ATCC 51449]
Length = 240
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDISP 101
+ L+K++GY F++ LL A+TH S ++ NN L LG V+D V L K
Sbjct: 11 QLLEKKLGYVFQNQQLLLEALTHKSCKKQYNNERLEFLGDAVLDLLVGEYLFKKFPLAKE 70
Query: 102 KDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGA 155
+L++ V+E ++++ ++D LG + S + N+ +++ AF A+ GA
Sbjct: 71 GELSKLRACIVNEKGFMKLAQSLD---LGAYLYISQSEENNNGRQKASILSNAFEALIGA 127
Query: 156 IAVDT 160
I +++
Sbjct: 128 IYLES 132
>gi|313114998|ref|ZP_07800491.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
gi|310622689|gb|EFQ06151.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
Length = 224
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 18/132 (13%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNK 95
LET+ IGY FK+ LL A+TH+S++ E +N L LG V+ + L +
Sbjct: 5 LETI---IGYKFKNPELLEIALTHTSYANESRTPVKHNERLEFLGDSVLQIVSADYLFHA 61
Query: 96 DIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQK-VVRVSPKTNSTVPAVVCGAF 149
D DL R VSE + + + +D G +L L + R +T P+VV AF
Sbjct: 62 YADRPEGDLTRIRASLVSEGALFQFAQEIDLGEYLRLGRGEERCGGRTR---PSVVSDAF 118
Query: 150 RAIFGAIAVDTG 161
A+ A+ +D G
Sbjct: 119 EALIAALYLDGG 130
>gi|223937314|ref|ZP_03629220.1| Ribonuclease III [bacterium Ellin514]
gi|223894099|gb|EEF60554.1| Ribonuclease III [bacterium Ellin514]
Length = 231
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 13/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNK 95
L LQ +GY F+ I LL+ A+TH S + E +N+ L LG V+ ++ L +K
Sbjct: 4 LNNLQTALGYAFRKIELLQLALTHPSVAHEQRTPVQHNQRLEFLGDAVLQLVLTHELYSK 63
Query: 96 DIDISPKDLNRRVSETSN----VEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFR 150
D L + ++ N E A++ G HL L + P+ + F
Sbjct: 64 FPDFGEGPLTKARAKLVNRRALAEQGRALNLGAHLILSRGEEA--HGGRLRPSALADTFE 121
Query: 151 AIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 122 ALLGAIFLDGG 132
>gi|148284924|ref|YP_001249014.1| ribonuclease III [Orientia tsutsugamushi str. Boryong]
gi|146740363|emb|CAM80798.1| ribonuclease III [Orientia tsutsugamushi str. Boryong]
Length = 251
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 24 VRAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE----ENNRALGIL 79
+R N++R K T L+ LQ +IGY F SI LL A+TH S ++ +N + L L
Sbjct: 6 MRDTNNERNKLYKVDYTKLDALQSEIGYNFNSIDLLIEALTHPSINQYGYTKNYQRLEFL 65
Query: 80 GGYVIDTSVSLRLL 93
G +++ +S L
Sbjct: 66 GDVILNLVISETLF 79
>gi|384082329|ref|ZP_09993504.1| ribonuclease III [gamma proteobacterium HIMB30]
Length = 226
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+T L+ LQ ++GY FK I L A+TH S +N L LG +++ V+ L + +
Sbjct: 3 STNLDDLQSRLGYRFKDISHLESALTHRSMGPSHNERLEFLGDSIVNFVVAEALFRRYPE 62
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L R R S +S + LG + +R+ + +++ A A+
Sbjct: 63 AREGKLTRMRASLVRGQSLSQLARRLQLG--ETIRLGSGERKSGGRRRDSILADAMEAVI 120
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 121 GAVFLDGG 128
>gi|225019245|ref|ZP_03708437.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
DSM 5476]
gi|224947876|gb|EEG29085.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
DSM 5476]
Length = 228
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
++ +K IGYTF + LL +A+THSSF+ E NN L LG V+ ++ L
Sbjct: 1 MKNFEKTIGYTFHNQKLLEQALTHSSFTNETGRHHHKNNERLEFLGDSVVSLIIANHLFV 60
Query: 95 KDIDISPKDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVP--AVVCGA 148
D+ +L + V + S E + +D LG Q ++ + + + + A
Sbjct: 61 NFPDMPEGELTKLRASLVCDRSLAEFAGRID---LGNQLIMGKGEEHSGGRQRRSNLEDA 117
Query: 149 FRAIFGAIAVDTG 161
F A+ GAI +D G
Sbjct: 118 FEALVGAIYLDGG 130
>gi|163802958|ref|ZP_02196845.1| ribonuclease III [Vibrio sp. AND4]
gi|159173248|gb|EDP58076.1| ribonuclease III [Vibrio sp. AND4]
Length = 226
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
+ +E L++++GY FK GL+ A+TH S + ++N L LG ++ ++ L ++ +
Sbjct: 3 SPIEKLERKLGYQFKDAGLINLALTHRSANSKHNERLEFLGDSILSFVIADELYHRFPKV 62
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGA 155
+ D++ R+ T + A G L +++ P + +++ A AI GA
Sbjct: 63 NEGDMS-RMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGA 121
Query: 156 IAVDT 160
I +D+
Sbjct: 122 IYLDS 126
>gi|89900532|ref|YP_523003.1| ribonuclease III [Rhodoferax ferrireducens T118]
gi|122479398|sp|Q21XN1.1|RNC_RHOFD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|89345269|gb|ABD69472.1| RNAse III [Rhodoferax ferrireducens T118]
Length = 228
Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
L LQ ++ + F + GLL RA+TH SFS ++N L LG V+ +V+ L + +
Sbjct: 3 NGLMALQARLQHEFSNPGLLTRALTHRSFSLDHNERLEFLGDSVLGLAVADLLYERLSTL 62
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGA 155
DL+ RV + + + LGL +V+R+ P+++ A A+ GA
Sbjct: 63 PEGDLS-RVRANLVKQDTLHHLALGLGLPEVIRLGEGEARSGGHKRPSILADALEAVIGA 121
Query: 156 IAVDTG 161
+ +D G
Sbjct: 122 VYLDAG 127
>gi|389871837|ref|YP_006379256.1| ribonuclease III [Advenella kashmirensis WT001]
gi|388537086|gb|AFK62274.1| ribonuclease III [Advenella kashmirensis WT001]
Length = 250
Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L++ +GY FK LL +A+TH S S +N LG +++ +V+ L ++
Sbjct: 3 LSRLERLLGYQFKDQRLLVQALTHRSHSATHNERFEFLGDSILNFTVAAILFHRLQREDE 62
Query: 102 KDLNRRVSETSNVEISCAVDGMH-LGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
DL+R S V+ + D H L L + +R+ + P+++ A AIF A+
Sbjct: 63 GDLSR--IRASLVKQATLADIAHRLELPQFLRLGEGELKSGGFRRPSILADALEAIFAAV 120
Query: 157 AVDT 160
+D+
Sbjct: 121 YLDS 124
>gi|189184858|ref|YP_001938643.1| ribonuclease III [Orientia tsutsugamushi str. Ikeda]
gi|189181629|dbj|BAG41409.1| ribonuclease III [Orientia tsutsugamushi str. Ikeda]
Length = 246
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 24 VRAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE----ENNRALGIL 79
+R N++ K T L+TLQ +IGY F SI LL A+TH S ++ +N + L L
Sbjct: 1 MRDTNNEHNKLYKVDYTKLDTLQSEIGYNFNSIDLLIEALTHPSINQYGYTKNYQRLEFL 60
Query: 80 GGYVIDTSVSLRLL 93
G +++ +S L
Sbjct: 61 GDVILNLVISETLF 74
>gi|56964064|ref|YP_175795.1| ribonuclease III [Bacillus clausii KSM-K16]
gi|81365967|sp|Q5WFM6.1|RNC_BACSK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56910307|dbj|BAD64834.1| ribonuclease III [Bacillus clausii KSM-K16]
Length = 260
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 20/164 (12%)
Query: 16 IAISSSFQVRAANDQRFKTSSPFATALETLQKQI-------GYTFKSIGLLRRAMTHSS- 67
+A SS +Q + + +R K S E +KQ G TF++ LL +A THSS
Sbjct: 1 MAQSSKYQRKPRSGER-KRSQRRLELTEEQKKQFDDLLVRTGLTFENRKLLIQAFTHSSY 59
Query: 68 ------FSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVD 121
FS +N L LG V++ +VS L ++S D+ ++ + E S A
Sbjct: 60 VNEQRIFSSSDNERLEFLGDAVLELAVSQYLFKTYKNMSEGDMT-KLRASIVCEPSLARF 118
Query: 122 GMHLGLQKVVRVSPKTN----STVPAVVCGAFRAIFGAIAVDTG 161
L K+V + T PA++ F A GA+ +D G
Sbjct: 119 AEELQFGKLVLLGKGEEVTGGRTRPALLADVFEAFIGALYMDQG 162
>gi|344995859|ref|YP_004798202.1| ribonuclease 3 [Caldicellulosiruptor lactoaceticus 6A]
gi|343964078|gb|AEM73225.1| Ribonuclease 3 [Caldicellulosiruptor lactoaceticus 6A]
Length = 222
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA---LGILGGYVIDTSVSLRLLNKDID 98
+E +++ +GYTFK LLR A+TH S + N L LG ++ +VS L +
Sbjct: 1 MEEIERALGYTFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPE 60
Query: 99 ISPKDL-NRRVSETSNVEISCAVDGMHLGLQKVV--RVSPKTNSTVPAVVCGAFRAIFGA 155
+S +L N R + + +S + ++L + R + +++ AIFGA
Sbjct: 61 LSEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGA 120
Query: 156 IAVDTG 161
I +++G
Sbjct: 121 IFIESG 126
>gi|212710663|ref|ZP_03318791.1| hypothetical protein PROVALCAL_01729 [Providencia alcalifaciens DSM
30120]
gi|422017448|ref|ZP_16364013.1| ribonuclease III [Providencia alcalifaciens Dmel2]
gi|212686744|gb|EEB46272.1| hypothetical protein PROVALCAL_01729 [Providencia alcalifaciens DSM
30120]
gi|414105598|gb|EKT67155.1| ribonuclease III [Providencia alcalifaciens Dmel2]
Length = 226
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQ+++GYTFK LL +A+TH S S ++N L LG ++ ++ L ++ +
Sbjct: 6 LEKLQRKLGYTFKQNDLLIQALTHRSASSKHNERLEFLGDSILSFVIANDLYHRFPKVDE 65
Query: 102 KDLNR 106
D++R
Sbjct: 66 GDMSR 70
>gi|34497521|ref|NP_901736.1| ribonuclease III [Chromobacterium violaceum ATCC 12472]
gi|81655793|sp|Q7NWC4.1|RNC_CHRVO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|34103376|gb|AAQ59738.1| ribonuclease III [Chromobacterium violaceum ATCC 12472]
Length = 236
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L + + Y F+ LLR+A+TH S+S NN +G +++ +V+ L ++ ++ +L
Sbjct: 11 LSQALDYAFQKPELLRQALTHRSYSSANNERFEFVGDSILNYTVARMLYDQFPQLTEGEL 70
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V++ + EI+ + D ++LG ++ P+++ A A F A++
Sbjct: 71 SRLRANLVNQNTLAEIAHELKLGDYLYLGEGEL----KSGGFNRPSILADALEATFAAVS 126
Query: 158 VD 159
D
Sbjct: 127 FD 128
>gi|46117132|ref|XP_384584.1| hypothetical protein FG04408.1 [Gibberella zeae PH-1]
Length = 1451
Score = 43.9 bits (102), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 37 PFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNR----ALGILGGYVIDTSVSLRL 92
P +E L++ IGYTF+ LL AMTH S++ + + L LG V+D V R+
Sbjct: 1149 PLPPTMEPLEELIGYTFQKKSLLIEAMTHGSYAADGQQRSYEQLEFLGDAVLDYIVVTRM 1208
Query: 93 LNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQK 129
D + L+ + +N + A M GL++
Sbjct: 1209 FQSDPPVPNGRLHMVKTAMANADF-LAFTNMQHGLRR 1244
>gi|406940754|gb|EKD73426.1| hypothetical protein ACD_45C00321G0009 [uncultured bacterium]
Length = 220
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 13/135 (9%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L ++IGY F LL+ A+TH S E+NN L LG +++ ++ L + DL
Sbjct: 6 LSRKIGYHFNDPRLLKIALTHRSSGEDNNERLEFLGDSIVNFVIAEILFQQYPAAQEGDL 65
Query: 105 NRRVSETSNVEISCAVDGMHLGLQKVVRVS----PKTNSTVPAVVCGAFRAIFGAIAVDT 160
+R + N E + + G L + + + S +++ A AI GAI +D
Sbjct: 66 SRWRATLINRE-TLGILGRQFELGRYLYLGMGELKSGGSERMSILSCAMEAIVGAIYLDG 124
Query: 161 GKCDDAGDVFLRVHS 175
G FL VH
Sbjct: 125 G--------FLAVHE 131
>gi|386714302|ref|YP_006180625.1| ribonuclease III [Halobacillus halophilus DSM 2266]
gi|384073858|emb|CCG45351.1| ribonuclease III [Halobacillus halophilus DSM 2266]
Length = 230
Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKD 96
+ QK++ F+ I LL +A THSS+ E +N L LG V++ VS L +
Sbjct: 6 SFQKRVNIHFQDISLLEQAFTHSSYVNEHRKTERKDNERLEFLGDAVLELGVSQYLYREY 65
Query: 97 IDISPKDLNRR----VSETSNVEISCAVDGMHL-GLQKVVRVSPKTNSTVPAVVCGAFRA 151
D++ +L + V E S V+ + ++ L L K ++ N PA++ F A
Sbjct: 66 PDMAEGELTKFRASIVCEASLVDFAKDLNFHELILLGKGEELTGGRNR--PALLADVFEA 123
Query: 152 IFGAIAVDTG 161
GA+ +D G
Sbjct: 124 FIGALYLDQG 133
>gi|293604014|ref|ZP_06686427.1| ribonuclease III [Achromobacter piechaudii ATCC 43553]
gi|292817618|gb|EFF76686.1| ribonuclease III [Achromobacter piechaudii ATCC 43553]
Length = 253
Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L TL+ ++ + F LL +A+TH S +N L LG V++ V+ L + I
Sbjct: 2 SLATLENRLDHHFGDPALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYSKID 61
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
DL+R + + S A L L + +R+ + P+++ A+FGA+
Sbjct: 62 EGDLSRLRANLVK-QASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALFGAV 120
Query: 157 AVDTGKCDDAGDVFLR 172
+D G D A V +R
Sbjct: 121 FLDAG-FDAARRVIVR 135
>gi|220927101|ref|YP_002502403.1| ribonuclease III [Methylobacterium nodulans ORS 2060]
gi|219951708|gb|ACL62100.1| ribonuclease III [Methylobacterium nodulans ORS 2060]
Length = 244
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS--EENNRALGILGGYVIDTSVSLRLLNKDIDI 99
L TL+++IG+ F LL RA+TH S + E+ + L LG V+ +V+ L
Sbjct: 16 LSTLEEKIGHRFADQELLVRALTHVSAATGPESYQRLEFLGDRVLGLAVADGLFAALPGA 75
Query: 100 SPKDLNRRVS----ETSNVEISCAVD-GMHLGL-QKVVRVSPKTNSTVPAVVCGAFRAIF 153
DL+RR+S S ++ A D G HL L V + N + A VC AI
Sbjct: 76 DEGDLSRRLSGLVRRESCAAVATAWDVGPHLKLGAGEVYGGGRRNPAILADVC---EAIL 132
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 133 GAIFLDAG 140
>gi|346306365|ref|ZP_08848523.1| ribonuclease III [Dorea formicigenerans 4_6_53AFAA]
gi|345900170|gb|EGX69998.1| ribonuclease III [Dorea formicigenerans 4_6_53AFAA]
Length = 231
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L+ L+ +IGYTF+ LL++AM+HSS+ E N L LG V++ VS L
Sbjct: 5 LKELEHRIGYTFQDFALLKKAMSHSSYVNEEHLPKYECNERLEFLGDAVLEL-VSSEFLF 63
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
+ +P+ + + E + A + L + + + ++T +V A
Sbjct: 64 FEHPTTPEGELTKTRASMVCEPALAFCAREIELGEYLLLGKGEDATGGRKRESVTSDAME 123
Query: 151 AIFGAIAVDTG 161
A+ GAI VD G
Sbjct: 124 ALIGAIYVDGG 134
>gi|303248688|ref|ZP_07334942.1| ribonuclease III [Desulfovibrio fructosovorans JJ]
gi|302489944|gb|EFL49870.1| ribonuclease III [Desulfovibrio fructosovorans JJ]
Length = 233
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNKDID 98
L+ +G+ F LL A+THSS++ E +N L LG V++ SVS L + +
Sbjct: 7 LENALGHVFVRPELLTTALTHSSYANERGEAAKHNERLEFLGDAVLELSVSEELFARFPE 66
Query: 99 ISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVCGAFRAIFG 154
+L S+ N E S A + L L+ + + + T P+++ F A+ G
Sbjct: 67 APEGELTLLRSQLVN-ESSLAAMALRLSLEDHILLGKGEENQGGRTRPSLLSDVFEAVIG 125
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 126 ALFLDGG 132
>gi|420451984|ref|ZP_14950834.1| ribonuclease III [Helicobacter pylori Hp A-6]
gi|393069825|gb|EJB70620.1| ribonuclease III [Helicobacter pylori Hp A-6]
Length = 239
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+D LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAID-----LQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|262196731|ref|YP_003267940.1| ribonuclease III [Haliangium ochraceum DSM 14365]
gi|262080078|gb|ACY16047.1| ribonuclease III [Haliangium ochraceum DSM 14365]
Length = 282
Score = 43.5 bits (101), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 35 SSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSV 88
+ A L L+ +G+ F+ LL A+TH SF+ E +N L LG V+D +V
Sbjct: 38 AGKHAIDLSGLEDILGHRFRKRALLEAAVTHRSFANEQAVPCTDNERLEFLGDAVLDLAV 97
Query: 89 SLRLLNKDIDISPKDLN----RRVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPA 143
L++ D+S L+ + VSE EI+ + G +L L K R S N +
Sbjct: 98 GHMLMDVHPDLSEGRLSVTRAQIVSEKGLSEIAYGLGLGTYLRLGKGERRSGGQNKA--S 155
Query: 144 VVCGAFRAIFGAIAVDTG 161
++ + A+ A+ +D G
Sbjct: 156 ILADSLEAVIAAVYLDGG 173
>gi|357975276|ref|ZP_09139247.1| ribonuclease III [Sphingomonas sp. KC8]
Length = 223
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 49 IGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRV 108
+G+ + IGL +RA+TH S + L LG V+ + L + D L+RR+
Sbjct: 13 LGHAPRDIGLFQRALTHGSHGAASYERLEFLGDRVLGLIAAAWLYERFPDEPEGSLSRRI 72
Query: 109 SETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVCGAFRAIFGAIAVDTGKCD 164
+ + E +CA G LG+ +R+ + VV A A+ GA+ ++ G
Sbjct: 73 NSIVSRE-TCAEVGRALGVPGWLRLGKQARDDGAVNSDNVVGDAVEALIGALYLEAGH-- 129
Query: 165 DAGDVFLR 172
DA F+R
Sbjct: 130 DAAVAFVR 137
>gi|261408033|ref|YP_003244274.1| ribonuclease III [Paenibacillus sp. Y412MC10]
gi|329929588|ref|ZP_08283295.1| ribonuclease III [Paenibacillus sp. HGF5]
gi|261284496|gb|ACX66467.1| ribonuclease III [Paenibacillus sp. Y412MC10]
gi|328936233|gb|EGG32685.1| ribonuclease III [Paenibacillus sp. HGF5]
Length = 233
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
L+ LQ ++ F++ LL++A TH+S+ E +N L LG V++ +VS L N
Sbjct: 6 LKQLQHKLQIQFRNAMLLKQAFTHASYVNEHRFSQSQDNERLEFLGDAVLELTVSEFLYN 65
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
D +L + V E S V+ + ++D G ++ L K ++ T PA++ F
Sbjct: 66 LFPDRPEGELTKLRAAIVCEPSLVQFAVSLDFGRYVLLGKGEEMT--GGRTRPALLADVF 123
Query: 150 RAIFGAIAVDTG 161
+ GA+ +D G
Sbjct: 124 ESFVGALYLDQG 135
>gi|148827174|ref|YP_001291927.1| ribonuclease III [Haemophilus influenzae PittGG]
gi|189043320|sp|A5UFI8.1|RNC_HAEIG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|148718416|gb|ABQ99543.1| ribonuclease III [Haemophilus influenzae PittGG]
Length = 227
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ L+++IGY F I LL++A+TH S + ++N L LG +++ +++ L ++ +
Sbjct: 4 LDRLERKIGYRFNDIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNE 63
Query: 102 KDLNRRVSETSNVEISCAV--------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+ R+ T E + A+ D M LG ++ + S + V AI
Sbjct: 64 GELS-RMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCV----EAII 118
Query: 154 GAIAVDTG 161
GA+++D G
Sbjct: 119 GAMSLDQG 126
>gi|154707005|ref|YP_001423899.1| ribonuclease III [Coxiella burnetii Dugway 5J108-111]
gi|165919331|ref|ZP_02219417.1| ribonuclease III [Coxiella burnetii Q321]
gi|189043305|sp|A9KFA0.1|RNC_COXBN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|154356291|gb|ABS77753.1| ribonuclease III [Coxiella burnetii Dugway 5J108-111]
gi|165916991|gb|EDR35595.1| ribonuclease III [Coxiella burnetii Q321]
Length = 233
Score = 43.5 bits (101), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L +++G+ F ++ LL+ A+TH S +NN L LG V+ ++ L +
Sbjct: 4 LNKLMERLGHQFNNLELLKIALTHRSSGADNNERLEFLGDSVLGFIIASELYQRRPQARE 63
Query: 102 KDLNR-RVSETSNVEISCAVD--GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAV 158
DL+R R S + E++ G++ LQ V +++ A AI GAI +
Sbjct: 64 GDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGAIYI 123
Query: 159 DTG 161
D G
Sbjct: 124 DAG 126
>gi|166031773|ref|ZP_02234602.1| hypothetical protein DORFOR_01474 [Dorea formicigenerans ATCC
27755]
gi|166028226|gb|EDR46983.1| ribonuclease III [Dorea formicigenerans ATCC 27755]
Length = 233
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L+ L+ +IGYTF+ LL++AM+HSS+ E N L LG V++ VS L
Sbjct: 7 LKELEHRIGYTFQDFALLKKAMSHSSYVNEEHLPKYECNERLEFLGDAVLEL-VSSEFLF 65
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
+ +P+ + + E + A + L + + + ++T +V A
Sbjct: 66 FEHPTTPEGELTKTRASMVCEPALAFCAREIELGEYLLLGKGEDATGGRKRESVTSDAME 125
Query: 151 AIFGAIAVDTG 161
A+ GAI VD G
Sbjct: 126 ALIGAIYVDGG 136
>gi|145630695|ref|ZP_01786474.1| ribonuclease III [Haemophilus influenzae R3021]
gi|145641851|ref|ZP_01797426.1| ribonuclease III [Haemophilus influenzae R3021]
gi|144983821|gb|EDJ91271.1| ribonuclease III [Haemophilus influenzae R3021]
gi|145273473|gb|EDK13344.1| ribonuclease III [Haemophilus influenzae 22.4-21]
Length = 227
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ L+++IGY F I LL++A+TH S + ++N L LG +++ +++ L ++ +
Sbjct: 4 LDRLERKIGYRFNDIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNE 63
Query: 102 KDLNRRVSETSNVEISCAV--------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+ R+ T E + A+ D M LG ++ + S + V AI
Sbjct: 64 GELS-RMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCV----EAII 118
Query: 154 GAIAVDTG 161
GA+++D G
Sbjct: 119 GAMSLDQG 126
>gi|16271989|ref|NP_438187.1| ribonuclease III [Haemophilus influenzae Rd KW20]
gi|260580682|ref|ZP_05848509.1| ribonuclease III [Haemophilus influenzae RdAW]
gi|1173093|sp|P44441.1|RNC_HAEIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|1572958|gb|AAC21692.1| ribonuclease III (rnc) [Haemophilus influenzae Rd KW20]
gi|260092744|gb|EEW76680.1| ribonuclease III [Haemophilus influenzae RdAW]
Length = 227
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ L+++IGY F I LL++A+TH S + ++N L LG +++ +++ L ++ +
Sbjct: 4 LDRLERKIGYRFNDIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNE 63
Query: 102 KDLNRRVSETSNVEISCAV--------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+ R+ T E + A+ D M LG ++ + S + V AI
Sbjct: 64 GELS-RMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCV----EAII 118
Query: 154 GAIAVDTG 161
GA+++D G
Sbjct: 119 GAMSLDQG 126
>gi|414154272|ref|ZP_11410591.1| Ribonuclease 3 [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411454063|emb|CCO08495.1| Ribonuclease 3 [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 249
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
L++++G+ + + LL +A+THSS E +N+ L LG V++ VS L
Sbjct: 14 LKQRLGFQWHNPSLLIQALTHSSCVHESRGHGIYHNQRLEFLGDAVLELVVSEELYRMFP 73
Query: 98 DISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
D + +L + + S E S A L L + +R+ + P+++ AF A+
Sbjct: 74 DRTEGELTK-MRAASVCEPSLAKAARELDLGRCLRMGRGEERSGGRERPSILADAFEALL 132
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 133 GAIYLDQG 140
>gi|85705112|ref|ZP_01036212.1| Ribonuclease III [Roseovarius sp. 217]
gi|85670434|gb|EAQ25295.1| Ribonuclease III [Roseovarius sp. 217]
Length = 238
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 9/150 (6%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSF---SEENNRALGILGGYVIDTSVSLRLLN 94
+ ++ Q ++G+ F + LL RA+THSS + ++N+ L LG V+ +S LL+
Sbjct: 14 LSAEIKAFQTRLGHEFTATELLIRALTHSSMVTPNRDDNQRLEFLGDRVLGLVMSEALLS 73
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFR 150
+D + L R + E +CA + L V+++ A++ A
Sbjct: 74 QDKGATEGQLAPRFNALVRKE-ACADVAREIDLGAVLKLGRSEMLSGGRRKEALLGDAME 132
Query: 151 AIFGAIAVDTGKCDDAGDVFLRVHSGEVGK 180
A+ AI +D G D A V LR+ +G+
Sbjct: 133 AVIAAIYLDAG-FDAARAVVLRLWGARIGE 161
>gi|29654794|ref|NP_820486.1| ribonuclease III [Coxiella burnetii RSA 493]
gi|161830652|ref|YP_001597345.1| ribonuclease III [Coxiella burnetii RSA 331]
gi|30581027|sp|P51837.2|RNC_COXBU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043306|sp|A9N942.1|RNC_COXBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|29542062|gb|AAO91000.1| ribonuclease III [Coxiella burnetii RSA 493]
gi|161762519|gb|ABX78161.1| ribonuclease III [Coxiella burnetii RSA 331]
Length = 233
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L +++G+ F ++ LL+ A+TH S +NN L LG V+ ++ L +
Sbjct: 4 LNKLMERLGHQFNNLELLKIALTHCSSGADNNERLEFLGDSVLGFIIASELYQRRPQARE 63
Query: 102 KDLNR-RVSETSNVEISCAVD--GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAV 158
DL+R R S + E++ G++ LQ V +++ A AI GAI +
Sbjct: 64 GDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGAIYI 123
Query: 159 DTG 161
D G
Sbjct: 124 DAG 126
>gi|408394282|gb|EKJ73491.1| hypothetical protein FPSE_06330 [Fusarium pseudograminearum CS3096]
Length = 1451
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 37 PFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNR----ALGILGGYVIDTSVSLRL 92
P +E L++ IGYTF+ LL AMTH S++ + + L LG V+D V R+
Sbjct: 1149 PLPPTMEPLEELIGYTFEKKSLLIEAMTHGSYAADGQQRSYEQLEFLGDAVLDYIVVTRM 1208
Query: 93 LNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQK 129
D + L+ + +N + A M GL++
Sbjct: 1209 FQSDPPVPNGRLHMVKTAMANADF-LAFTNMQHGLRR 1244
>gi|379987680|gb|AFD22620.1| dicer-like 3 protein, partial [Nicotiana attenuata]
Length = 596
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 22/147 (14%)
Query: 36 SPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE----ENNRALGILGGYVIDTSVSLR 91
+P A +E L+ ++ Y F GLL A+TH++ E N + L LG V+D ++
Sbjct: 182 TPKAKDIEDLELKLSYKFSVKGLLLEAITHATVLEVDVSYNYQRLEFLGDSVLDILITWY 241
Query: 92 LLNKDIDISPKDL-NRRVSETSNVEISCAV--DGMHLGLQ--------------KVVRVS 134
L K DI P +L + R + +N + A +H+ LQ K+V S
Sbjct: 242 LYQKHKDIDPGELTDLRSASVNNDNFAYAAVKRELHVHLQHHSGYLESEISAFVKLVSDS 301
Query: 135 PK-TNSTVPAVVCGAFRAIFGAIAVDT 160
+ P V+ +I GAI VDT
Sbjct: 302 CSLQGNKAPKVLGDLVESIAGAILVDT 328
>gi|171689324|ref|XP_001909602.1| hypothetical protein [Podospora anserina S mat+]
gi|170944624|emb|CAP70735.1| unnamed protein product [Podospora anserina S mat+]
Length = 1406
Score = 43.5 bits (101), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 36 SPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA----LGILGGYVID 85
P + L+K IGYTFK LL AMTH SF+ ++ RA L LG ++D
Sbjct: 1071 EPLPPNMHLLEKLIGYTFKKKSLLIEAMTHPSFNVQDTRASLDRLEFLGDAILD 1124
>gi|358332039|dbj|GAA50765.1| endoribonuclease Dicer homolog 4 [Clonorchis sinensis]
Length = 1042
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE----NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LQ +GY FK I LL RA+TH S + + + L LG V+ +++ L K ++
Sbjct: 796 LQNILGYQFKDISLLIRALTHQSSPQTSLFGSYQRLEFLGDAVLGYVITIYLYEKHVEFD 855
Query: 101 PKDLNR-RVSETSNVEISCAV 120
P L R + SN ++CA+
Sbjct: 856 PGQLTESRSNIVSNNSLACAI 876
>gi|334340306|ref|YP_004545286.1| ribonuclease III [Desulfotomaculum ruminis DSM 2154]
gi|334091660|gb|AEG60000.1| ribonuclease III [Desulfotomaculum ruminis DSM 2154]
Length = 249
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 12/132 (9%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLL 93
A++ L+ ++G+ + + LL +A+THSS E +N+ L LG V++ +S L
Sbjct: 7 AIQRLKVKLGFRWHNPALLTQALTHSSCVHESRGHGLCHNQRLEFLGDAVLELLISEHLY 66
Query: 94 NKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAF 149
D + +L ++ + S E S A L L + +R+ + P+++ AF
Sbjct: 67 QMFPDRTEGELTKKRA-ASVCEPSLAKVARGLDLGRCLRMGRGEERSGGRERPSILADAF 125
Query: 150 RAIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 126 EALLGAIYLDQG 137
>gi|422323120|ref|ZP_16404160.1| ribonuclease 3 [Achromobacter xylosoxidans C54]
gi|317401886|gb|EFV82493.1| ribonuclease 3 [Achromobacter xylosoxidans C54]
Length = 253
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L TL+ ++ + F LL +A+TH S +N L LG V++ V+ L + I
Sbjct: 2 SLATLENRLDHHFGDPALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYSKID 61
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
DL+R + + S A L L + +R+ + P+++ A+FGA+
Sbjct: 62 EGDLSRLRANLVK-QASLADIAQRLELSQYLRLGEGELKSGGFRRPSILADTVEALFGAV 120
Query: 157 AVDTGKCDDAGDVFLR 172
+D G D A V +R
Sbjct: 121 FLDAG-FDAARRVIVR 135
>gi|254474637|ref|ZP_05088023.1| ribonuclease III [Ruegeria sp. R11]
gi|214028880|gb|EEB69715.1| ribonuclease III [Ruegeria sp. R11]
Length = 222
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 9/146 (6%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN---NRALGILGGYVIDTSVSLRLLNKDID 98
+ + +IGY F LL RA+TH+S S N N+ L LG V+ ++ LL D D
Sbjct: 1 MHAFEARIGYQFTEPALLVRALTHASVSSPNRKDNQRLEFLGDRVLGLVMATALLETDKD 60
Query: 99 ISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFG 154
S L R + E +CA + + V+++ + A++ A A+
Sbjct: 61 ASEGQLAPRFNALVRKE-TCADVARQIDVGSVLKLGRSETLSGGRRKMALLGDAMEAVIA 119
Query: 155 AIAVDTGKCDDAGDVFLRVHSGEVGK 180
A+ D G D A ++ LR+ +G+
Sbjct: 120 AVYKDGG-FDAAQELILRLWGDRIGR 144
>gi|451945747|ref|YP_007466342.1| ribonuclease III [Desulfocapsa sulfexigens DSM 10523]
gi|451905095|gb|AGF76689.1| ribonuclease III [Desulfocapsa sulfexigens DSM 10523]
Length = 245
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS------EENNRALGILGGYVIDTSVSLRLLNK 95
L L++ +GY F + LL++A+ HSSF+ ++NN L LG V+D + L +
Sbjct: 14 LAVLEQCLGYRFTDLRLLQKALIHSSFAFEQAQIDKNNEILEFLGDAVLDLVIGHTLCKR 73
Query: 96 DIDISPKDLNR-RVSETSNVEISCAVDGMHLG----LQKVVRVSPKTNSTVPAVVCGAFR 150
++ +L R R S + ++ + LG L K S N + +++ A+
Sbjct: 74 FPEMREGELTRLRSSLVNETHLATMARNLKLGDFLCLGKGEDASNGRNKS--SILSCAYE 131
Query: 151 AIFGAIAVDT 160
A+ GAI D+
Sbjct: 132 AVIGAILEDS 141
>gi|302670933|ref|YP_003830893.1| ribonuclease III Rnc [Butyrivibrio proteoclasticus B316]
gi|302395406|gb|ADL34311.1| ribonuclease III Rnc [Butyrivibrio proteoclasticus B316]
Length = 230
Score = 43.5 bits (101), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENN-------RALGILGGYVIDTSVSLRLLNKD 96
Q+ IGY FK+I LL +A+THSSF E L LG +++ S L K
Sbjct: 9 NFQQVIGYKFKNIDLLIQALTHSSFVNEQKINKKPDYERLEFLGDAILEMVSSEYLFKKY 68
Query: 97 IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
D +++ ++ + E + A H+ L+K +++ T +++ A+
Sbjct: 69 PDKKEGEMS-KIRASLVCEPALAFCAEHIELKKYIQLGKGEELTGGRNKESIIADVMEAV 127
Query: 153 FGAIAVDTG 161
GA+ +D G
Sbjct: 128 IGALFLDGG 136
>gi|358063738|ref|ZP_09150342.1| ribonuclease III [Clostridium hathewayi WAL-18680]
gi|356698064|gb|EHI59620.1| ribonuclease III [Clostridium hathewayi WAL-18680]
Length = 246
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
LE L++ IGY+F+ +L AMTHSS++ E+ N L LG V++ VS L
Sbjct: 5 LEELEQAIGYSFQDKQMLTHAMTHSSYANEHRMDKLMCNERLEFLGDAVLEI-VSSDFLY 63
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
SP+ +V + E + A + L + + + ++T ++V A
Sbjct: 64 HKYGQSPEGELTKVRASIVCEPTLAFCAGEIHLGEYLLLGKGEDATGGRGRNSIVSDAME 123
Query: 151 AIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 124 ALIGAIYLDGG 134
>gi|373467600|ref|ZP_09558894.1| ribonuclease III [Haemophilus sp. oral taxon 851 str. F0397]
gi|417840127|ref|ZP_12486280.1| Ribonuclease 3 [Haemophilus haemolyticus M19107]
gi|341950132|gb|EGT76724.1| Ribonuclease 3 [Haemophilus haemolyticus M19107]
gi|371758321|gb|EHO47094.1| ribonuclease III [Haemophilus sp. oral taxon 851 str. F0397]
Length = 227
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ L+++IGY F I LL++A+TH S + ++N L LG +++ +++ L ++ +
Sbjct: 4 LDRLERKIGYRFNDIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNE 63
Query: 102 KDLNRRVSETSNVEISCAV--------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+ R+ T E + A+ D M LG ++ + S + V AI
Sbjct: 64 GELS-RMRATLVREPTLAILARQFELGDYMSLGSGELKSGGFRRESILADCV----EAII 118
Query: 154 GAIAVDTG 161
GA+++D G
Sbjct: 119 GAMSLDQG 126
>gi|126654291|ref|ZP_01726068.1| ribonuclease III [Bacillus sp. B14905]
gi|126589255|gb|EAZ83416.1| ribonuclease III [Bacillus sp. B14905]
Length = 254
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ ++ TF + LL +A THSS+ E +N L LG V++ SVS L
Sbjct: 23 FELLQHELNITFVNKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLFE 82
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
K ++S +L ++ + E S + LG + V + T PA++ F
Sbjct: 83 KYPNMSEGELT-KLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141
Query: 151 AIFGAIAVD 159
+ GA+ +D
Sbjct: 142 SFVGALYLD 150
>gi|419839848|ref|ZP_14363249.1| ribonuclease III [Haemophilus haemolyticus HK386]
gi|386908950|gb|EIJ73634.1| ribonuclease III [Haemophilus haemolyticus HK386]
Length = 227
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ L+++IGY F I LL++A+TH S + ++N L LG +++ +++ L ++ +
Sbjct: 4 LDRLERKIGYRFNDIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNE 63
Query: 102 KDLNRRVSETSNVEISCAV--------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+ R+ T E + A+ D M LG ++ + S + V AI
Sbjct: 64 GELS-RMRATLVREPTLAILARQFELGDYMSLGSGELKSGGFRRESILADCV----EAII 118
Query: 154 GAIAVDTG 161
GA+++D G
Sbjct: 119 GAMSLDQG 126
>gi|384894291|ref|YP_005768340.1| ribonuclease III [Helicobacter pylori Sat464]
gi|308063545|gb|ADO05432.1| ribonuclease III [Helicobacter pylori Sat464]
Length = 238
Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 34 TSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRL 92
T+SP+AT L+K +GY+FK LL +A+TH S NN L LG V+ + L
Sbjct: 13 TNSPYAT----LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELL 68
Query: 93 LNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVVCGA 148
+K L++ + + + + + LQ +RVS P+++ A
Sbjct: 69 YHKFYQYDEGKLSKLRASIVSAHGFTKLAKV-IALQDYLRVSSSEEISNGREKPSILSSA 127
Query: 149 FRAIFGAIAVDTG 161
F A+ + ++ G
Sbjct: 128 FEALMAGVYLEAG 140
>gi|336430743|ref|ZP_08610682.1| ribonuclease III [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336016836|gb|EGN46612.1| ribonuclease III [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 253
Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENN-------RALGILGGYVIDTSVSLRLLN 94
LE L+K+IGY F+ LLR+A+THSSF+ E L LG V++ S L +
Sbjct: 7 LEGLEKKIGYVFRDKMLLRQALTHSSFANEQKINKLEDYERLEFLGDAVLELVSSEFLFS 66
Query: 95 KDIDISPKDLNR-RVSETSNVEIS-CAVDGMHLGLQKVVRVSPKTNST----VPAVVCGA 148
++ ++ L + R S ++ CA D L L + + + +T ++ A
Sbjct: 67 ENPEMPEGKLTKLRSSMVCEPALAYCARD---LELGQYMLLGKGEEATGGRGRDSITSDA 123
Query: 149 FRAIFGAIAVDTG 161
A+ GA+ +D G
Sbjct: 124 MEAVIGALYLDGG 136
>gi|315648181|ref|ZP_07901282.1| ribonuclease III [Paenibacillus vortex V453]
gi|315276827|gb|EFU40170.1| ribonuclease III [Paenibacillus vortex V453]
Length = 232
Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
L+ LQ ++ F++ LL++A TH+S+ E +N L LG V++ +VS L N
Sbjct: 5 LKQLQHKLQIQFRNAMLLKQAFTHASYVNEHRFSQSQDNERLEFLGDAVLELTVSEFLYN 64
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
D +L + V E S V+ + +D G ++ L K ++ T PA++ F
Sbjct: 65 LFPDRPEGELTKLRAAIVCEPSLVQFAVGLDFGRYVLLGKGEEMT--GGRTRPALLADVF 122
Query: 150 RAIFGAIAVDTG 161
+ GA+ +D G
Sbjct: 123 ESFVGALYLDQG 134
>gi|312127786|ref|YP_003992660.1| ribonuclease iii [Caldicellulosiruptor hydrothermalis 108]
gi|311777805|gb|ADQ07291.1| ribonuclease III [Caldicellulosiruptor hydrothermalis 108]
Length = 222
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA---LGILGGYVIDTSVSLRLLNKDID 98
+E ++K +GY FK LLR A+TH S + N L LG ++ VS L D
Sbjct: 1 MEEIEKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVNFPD 60
Query: 99 ISPKDL-NRRVSETSNVEISCAVDGMHLGLQKVV--RVSPKTNSTVPAVVCGAFRAIFGA 155
+S +L N R + + +S + ++L + R + +++ AIFGA
Sbjct: 61 LSEGELTNIRAAVVCSQTLSEVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGA 120
Query: 156 IAVDTG 161
I +++G
Sbjct: 121 IFIESG 126
>gi|336322414|ref|YP_004602381.1| ribonuclease 3 [Flexistipes sinusarabici DSM 4947]
gi|336105995|gb|AEI13813.1| Ribonuclease 3 [Flexistipes sinusarabici DSM 4947]
Length = 226
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENN-----RALGILGGYVIDTSVSLRLLN-- 94
L LQ +I Y F + GLL A+TH S+S E N L LG V+ VS LL
Sbjct: 2 LSKLQDKINYNFSNSGLLFEAVTHRSYSNEQNLNRNYERLEFLGDAVLQLIVSEYLLKEY 61
Query: 95 KDIDISPKDLNRR--VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFRA 151
K D + R VSE +I+ A++ G ++ L K S P+++C F +
Sbjct: 62 KTFDEGILSMYRGYFVSEDFLSKIAAALNLGSYVKLGKGEAQSGGQEK--PSLLCDIFES 119
Query: 152 IFGAIAVDTG 161
+ AI +D G
Sbjct: 120 LVAAIYLDGG 129
>gi|310658889|ref|YP_003936610.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [[Clostridium]
sticklandii]
gi|308825667|emb|CBH21705.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [[Clostridium]
sticklandii]
Length = 229
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
LQK+I Y F+ + LL+ A+THSS+S E NN L LG ++ +S L
Sbjct: 8 LQKKINYEFQDLKLLKEALTHSSYSNEYKKIKNRNNERLEFLGDSILGLIISNYLFRLKK 67
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFG 154
++ +L + R + + +HLG + ++ T +++ A A+
Sbjct: 68 ELPEGELTKIRAAIVCERSLKDIAKSIHLGEYLYLGKGEESTGGRTRDSILADATEALIA 127
Query: 155 AIAVDTG--KCDDAGDVFLRVHSGEV 178
AI +D G K D F+ H G++
Sbjct: 128 AIYLDGGFRKATD----FVLEHMGDI 149
>gi|169827094|ref|YP_001697252.1| ribonuclease 3 [Lysinibacillus sphaericus C3-41]
gi|168991582|gb|ACA39122.1| Ribonuclease 3 [Lysinibacillus sphaericus C3-41]
Length = 254
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ ++ TF + LL +A THSS+ E +N L LG V++ SVS L
Sbjct: 23 FELLQHELNITFINKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLFE 82
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
K ++S +L ++ + E S + LG + V + T PA++ F
Sbjct: 83 KYPNMSEGELT-KLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141
Query: 151 AIFGAIAVD 159
+ GA+ +D
Sbjct: 142 SFVGALYLD 150
>gi|218960589|ref|YP_001740364.1| dsRNA-specific ribonuclease [Candidatus Cloacamonas
acidaminovorans]
gi|167729246|emb|CAO80157.1| dsRNA-specific ribonuclease [Candidatus Cloacamonas acidaminovorans
str. Evry]
Length = 255
Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 18/151 (11%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE---ENNRA------LGILGGYVIDTSV 88
+ +L LQK+I YTF LL A+TH S+ E+++ + LG ++ V
Sbjct: 24 WEKSLSQLQKKIDYTFHDPTLLYAALTHKSYLHRHFEDHKTPSPFERMEFLGDSILGFIV 83
Query: 89 SLRLLNKDIDISPKDLNRRVSE-TSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPA 143
S L + D L++ S+ S ++ + LG K + +SP+ ++ P+
Sbjct: 84 SKELFTRHPDEQEGKLSKLKSKIVSETYLTLKAKAIDLG--KYLLLSPEEQQSGGASKPS 141
Query: 144 VVCGAFRAIFGAIAVDTGKCDDAGDVFLRVH 174
++ A A+ AI +D+G A F+R H
Sbjct: 142 ILSDAMEALICAIYLDSGIS--AATRFIRNH 170
>gi|153208682|ref|ZP_01946929.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177']
gi|212219222|ref|YP_002306009.1| ribonuclease III [Coxiella burnetii CbuK_Q154]
gi|226741367|sp|B6J4J9.1|RNC_COXB1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|120575793|gb|EAX32417.1| ribonuclease III [Coxiella burnetii 'MSU Goat Q177']
gi|212013484|gb|ACJ20864.1| ribonuclease III [Coxiella burnetii CbuK_Q154]
Length = 233
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L +++G+ F ++ LL+ A+TH S +NN L LG V+ ++ L +
Sbjct: 4 LNKLMERLGHQFNNLELLKIALTHRSSGADNNERLEFLGDSVLGFIIASELYQRRPQARE 63
Query: 102 KDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
DL+R R S + E+ A + LG+ + +++ + +++ A AI GAI
Sbjct: 64 GDLSRMRASMVNGDEL--AQMSIKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGAI 121
Query: 157 AVDTG 161
+D G
Sbjct: 122 YIDAG 126
>gi|403069218|ref|ZP_10910550.1| ribonuclease III [Oceanobacillus sp. Ndiop]
Length = 227
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
++ L+ ++ F L+++A THSS+ E +N L LG V++ VS L
Sbjct: 3 VDQLENELNIKFHDHSLIKQAFTHSSYVNEHRKTVFSDNERLEFLGDAVLELGVSQYLFR 62
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
K+ D+ ++ + V E S + + ++ G L L K ++ PA++ F
Sbjct: 63 KNQDMPEGEMTKLRAAIVCEPSLMNFAVELNFGEFLLLGKGEEMT--GGRERPAILADVF 120
Query: 150 RAIFGAIAVDTGKCDDA-----GDVFLRVHSGEVGKALPF 184
A GA+ +D G D+A VF ++++G A+ +
Sbjct: 121 EAFLGALYLDQG-FDEALRFLKEHVFPKINTGAFSHAMDY 159
>gi|149374709|ref|ZP_01892483.1| ribonuclease III [Marinobacter algicola DG893]
gi|149361412|gb|EDM49862.1| ribonuclease III [Marinobacter algicola DG893]
Length = 229
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQ++IGY FK+ L A+TH SF +NN L LG +++ ++ L
Sbjct: 7 LEQLQRRIGYQFKTPERLLLALTHRSFGNQNNERLEFLGDSIVNMVIAEYLYLHFEKARE 66
Query: 102 KDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
L+R R V + A G L K +R+ + +++ A +I GAI
Sbjct: 67 GQLSRLRARMVKGV--TLAEIGREFELGKYLRLGSGEMKSGGFRRESILADAVESIIGAI 124
Query: 157 AVDT 160
+D+
Sbjct: 125 YLDS 128
>gi|160871765|ref|ZP_02061897.1| ribonuclease III [Rickettsiella grylli]
gi|159120564|gb|EDP45902.1| ribonuclease III [Rickettsiella grylli]
Length = 230
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSF-SEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +E+L +++ Y FK+ LL A++H SF +NN L LG V++ ++ L ++I
Sbjct: 3 SEIESLCEKLNYQFKNPELLEDALSHRSFRGNKNNERLEYLGDAVLNFVIAAALFRQNIK 62
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPA----VVCGAFRAIF 153
+L+R R + ++ G LG K +R+ T A ++ A+
Sbjct: 63 AREGELSRLRANLVRGETLTDLAQGFELG--KYLRLGAGELKTGGAQRKSILADGMEAVV 120
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 121 GAIYLDGG 128
>gi|407366274|ref|ZP_11112806.1| ribonuclease III [Pseudomonas mandelii JR-1]
Length = 229
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L ++
Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFDRFPL 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLAVLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|398842401|ref|ZP_10599585.1| ribonuclease III [Pseudomonas sp. GM102]
gi|398860197|ref|ZP_10615853.1| ribonuclease III [Pseudomonas sp. GM79]
gi|398898292|ref|ZP_10648235.1| ribonuclease III [Pseudomonas sp. GM50]
gi|398105878|gb|EJL95950.1| ribonuclease III [Pseudomonas sp. GM102]
gi|398184482|gb|EJM71932.1| ribonuclease III [Pseudomonas sp. GM50]
gi|398235217|gb|EJN21055.1| ribonuclease III [Pseudomonas sp. GM79]
Length = 229
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L ++
Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFDRFPL 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLAVLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|114706260|ref|ZP_01439162.1| ribonuclease III [Fulvimarina pelagi HTCC2506]
gi|114538121|gb|EAU41243.1| ribonuclease III [Fulvimarina pelagi HTCC2506]
Length = 234
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 12/145 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSF--SEENNRA---LGILGGYVIDTSVSLRLLNKD 96
L L+K+IG F L+RA+THSSF S+ + R+ L LG V+ V+ +L
Sbjct: 8 LAELEKRIGVRFSDHDRLQRALTHSSFRSSKGDGRSYERLEFLGDRVLGLVVADKLFEMF 67
Query: 97 IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVR----VSPKTNSTVPAVVCGAFRAI 152
+ +L+ R++ N E +CA +GL + VR + S ++ ++
Sbjct: 68 PNADEGELSLRLNSLVNAE-TCAAVADEIGLYEFVRQGGDLRKLAASRTKSIRADLMESL 126
Query: 153 FGAIAVDTGKCDDAGDVFLRVHSGE 177
AI +++G DDA F+ H GE
Sbjct: 127 IAAIYLNSG-LDDA-RAFIESHWGE 149
>gi|334129829|ref|ZP_08503632.1| Ribonuclease 3 [Methyloversatilis universalis FAM5]
gi|333444865|gb|EGK72808.1| Ribonuclease 3 [Methyloversatilis universalis FAM5]
Length = 226
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
+++ +G+ F S LL +A+THSSFS +N L +LG V+D + + L + D +P+ L
Sbjct: 8 VEQALGHVFASRALLAQALTHSSFSSSHNERLELLGDAVLDCAATDLLFRRFPD-TPEGL 66
Query: 105 NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST 140
R+ + E + A + L +R+S T
Sbjct: 67 LSRLRASLVKEDTLAEIAAGIALGDALRLSAGEQKT 102
>gi|378696092|ref|YP_005178050.1| RNase III [Haemophilus influenzae 10810]
gi|301168615|emb|CBW28205.1| RNase III [Haemophilus influenzae 10810]
Length = 227
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ L+++IGY F I LL++A+TH S + ++N L LG +++ +++ L ++ +
Sbjct: 4 LDRLERKIGYCFNDITLLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNE 63
Query: 102 KDLNRRVSETSNVEISCAV--------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+ R+ T E + A+ D M LG ++ + S + V AI
Sbjct: 64 GELS-RMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCV----EAII 118
Query: 154 GAIAVDTG 161
GA+++D G
Sbjct: 119 GAMSLDQG 126
>gi|299536778|ref|ZP_07050086.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1]
gi|424737014|ref|ZP_18165470.1| ribonuclease 3 [Lysinibacillus fusiformis ZB2]
gi|298727790|gb|EFI68357.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1]
gi|422948846|gb|EKU43222.1| ribonuclease 3 [Lysinibacillus fusiformis ZB2]
Length = 254
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ ++ TF + LL +A THSS+ E +N L LG V++ SVS L
Sbjct: 23 FELLQHELNITFINKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLFE 82
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
K ++S +L ++ + E S + LG + V + T PA++ F
Sbjct: 83 KYPNMSEGELT-KLRASIVCEPSLVIFANELGFGRFVLLGKGEELTGGRERPALLADVFE 141
Query: 151 AIFGAIAVD 159
+ GA+ +D
Sbjct: 142 SFVGALYLD 150
>gi|182679393|ref|YP_001833539.1| ribonuclease III [Beijerinckia indica subsp. indica ATCC 9039]
gi|182635276|gb|ACB96050.1| Ribonuclease III [Beijerinckia indica subsp. indica ATCC 9039]
Length = 235
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 36 SPFATALETLQKQIGYTFKSIGLLRRAMTHSSFS----EENNRALGILGGYVIDTSVSLR 91
S F LE L+ +IG+ F LL A+TH S + E + L LG V+ ++
Sbjct: 2 SRFKQDLEPLETRIGHRFVEADLLTTALTHVSVTVGARRETYQRLEFLGDRVLGLVIAEM 61
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSP---KTNSTVPAVVCGA 148
L + +L+RR+++ E SCA + G+ VR+ + +T A++
Sbjct: 62 LYATFPEAEEGELSRRLADLVRKE-SCAEVALEWGVGPFVRLGESERQIGTTKKAILGDV 120
Query: 149 FRAIFGAIAVDTG 161
+I GA+ +D G
Sbjct: 121 CESIIGAVFLDAG 133
>gi|420462032|ref|ZP_14960818.1| ribonuclease III [Helicobacter pylori Hp H-3]
gi|393079767|gb|EJB80498.1| ribonuclease III [Helicobacter pylori Hp H-3]
Length = 239
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+AT TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYATPNNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|313144833|ref|ZP_07807026.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818]
gi|313129864|gb|EFR47481.1| ribonuclease 3 [Helicobacter cinaedi CCUG 18818]
gi|396078041|dbj|BAM31417.1| ribonuclease III [Helicobacter cinaedi ATCC BAA-847]
Length = 242
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 10/125 (8%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDISP 101
+ L+K++GYTFK LL A+TH S NN L LG V+D V L K
Sbjct: 11 QALEKKLGYTFKDKKLLLEALTHKSCKNAYNNERLEFLGDAVLDLLVGEFLFRKFPSAKE 70
Query: 102 KDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGA 155
+L++ V+E ++++ ++D LG + S + N +++ AF A+ GA
Sbjct: 71 GELSKLRACIVNEKGFMKLAKSLD---LGAFLHISQSEEHNKGREKASILSNAFEALMGA 127
Query: 156 IAVDT 160
I +++
Sbjct: 128 IYLES 132
>gi|346642759|ref|YP_258202.2| ribonuclease III [Pseudomonas protegens Pf-5]
gi|90101636|sp|Q4KHT1.2|RNC_PSEF5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|341579898|gb|AAY90358.2| ribonuclease III [Pseudomonas protegens Pf-5]
Length = 229
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GY+FK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 2 SVSLSRLERQLGYSFKDQELMLLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPQ 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLAVLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|15601926|ref|NP_244998.1| ribonuclease III [Pasteurella multocida subsp. multocida str. Pm70]
gi|378774875|ref|YP_005177118.1| ribonuclease 3 [Pasteurella multocida 36950]
gi|386834840|ref|YP_006240157.1| ribonuclease III [Pasteurella multocida subsp. multocida str. 3480]
gi|13431826|sp|P57805.1|RNC_PASMU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|12720269|gb|AAK02145.1| Rnc [Pasteurella multocida subsp. multocida str. Pm70]
gi|356597423|gb|AET16149.1| ribonuclease 3 [Pasteurella multocida 36950]
gi|385201543|gb|AFI46398.1| ribonuclease III [Pasteurella multocida subsp. multocida str. 3480]
Length = 225
Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQ+QIGY F LL++A+TH S + ++N L LG +++ ++ L ++ +
Sbjct: 5 LERLQRQIGYQFNQPALLKQALTHRSAAVKHNERLEFLGDAILNFIIAEALYHQFPKCNE 64
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A L + + P + +++ AI GAI+
Sbjct: 65 GELS-RMRATLVREPTLASLARQFELGDYLSLGPGELKSGGFRRESILADCVEAIIGAIS 123
Query: 158 VDT 160
+D+
Sbjct: 124 LDS 126
>gi|407003127|gb|EKE19747.1| hypothetical protein ACD_8C00115G0008 [uncultured bacterium]
Length = 227
Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
+E+L K+IG F +I LLR+A+TH S+ EN N L LG V++ ++ L N
Sbjct: 2 IESLAKKIGVKFDNIELLRQAVTHRSYLNENRDLAIEHNERLEFLGDAVLELIITEHLYN 61
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS----PKTNSTVPAVVCGAFR 150
+ +L S N E+ +V LG++K + +S ++ A
Sbjct: 62 -NYKNPEGELTSWRSALVNGEMLASV-SQDLGVEKHLLMSRGEAKDKGRARQYLLANALE 119
Query: 151 AIFGAIAVDTG 161
AI GA +D G
Sbjct: 120 AIIGASYLDQG 130
>gi|417853302|ref|ZP_12498712.1| ribonuclease III [Pasteurella multocida subsp. multocida str.
Anand1_goat]
gi|338219907|gb|EGP05498.1| ribonuclease III [Pasteurella multocida subsp. multocida str.
Anand1_goat]
Length = 225
Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQ+QIGY F LL++A+TH S + ++N L LG +++ ++ L ++ +
Sbjct: 5 LERLQRQIGYQFNQPALLKQALTHRSAAVKHNERLEFLGDAILNFIIAEALYHQFPKCNE 64
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A L + + P + +++ AI GAI+
Sbjct: 65 GELS-RMRATLVREPTLASLARQFELGDYLSLGPGELKSGGFRRESILADCVEAIIGAIS 123
Query: 158 VDT 160
+D+
Sbjct: 124 LDS 126
>gi|257440564|ref|ZP_05616319.1| ribonuclease III [Faecalibacterium prausnitzii A2-165]
gi|257196887|gb|EEU95171.1| ribonuclease III [Faecalibacterium prausnitzii A2-165]
Length = 224
Score = 43.1 bits (100), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 18/132 (13%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNK 95
LET+ IGY FK+ LL A+TH+S++ E +N L LG V+ + L +
Sbjct: 5 LETI---IGYKFKNPKLLETALTHTSYANESRTPVQHNERLEFLGDSVLQIVSADYLFHA 61
Query: 96 DIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQK-VVRVSPKTNSTVPAVVCGAF 149
D DL R VSE + + + ++ G +L L + R +T P+VV AF
Sbjct: 62 YADRPEGDLTRIRSSLVSEGALFQFAQEINLGEYLRLGRGEERCGGRTR---PSVVSDAF 118
Query: 150 RAIFGAIAVDTG 161
A+ A+ +D G
Sbjct: 119 EAVIAALYLDGG 130
>gi|398864182|ref|ZP_10619720.1| ribonuclease III [Pseudomonas sp. GM78]
gi|398245551|gb|EJN31067.1| ribonuclease III [Pseudomonas sp. GM78]
Length = 229
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L ++
Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFDRFPL 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLAVLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|218885347|ref|YP_002434668.1| ribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|226735370|sp|B8DPB3.1|RNC_DESVM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|218756301|gb|ACL07200.1| Ribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 230
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE------ENNRALGILGGYVIDTSVSLRLLNK 95
E LQ I Y F GLL AMTHSS++ E+N L LG V++ VS L +
Sbjct: 2 FEKLQSDIHYAFNDAGLLATAMTHSSWANEQQEHVEHNERLEFLGDAVLELCVSEELFAR 61
Query: 96 DIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVCG 147
DL R VS+ + E++ L L+ +R+ S +++
Sbjct: 62 FPGAREGDLTRMRARLVSKPALAELA-----RDLQLELYLRLGRGEESQGGRERSSLLSD 116
Query: 148 AFRAIFGAIAVDTG 161
A A+ GA+ +D G
Sbjct: 117 ALEAMLGAVFLDGG 130
>gi|219870402|ref|YP_002474777.1| ribonuclease III [Haemophilus parasuis SH0165]
gi|254807496|sp|B8F3C7.1|RNC_HAEPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|219690606|gb|ACL31829.1| ribonuclease III/dsRNA-specific ribonuclease [Haemophilus parasuis
SH0165]
Length = 223
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++GY F ++ L +A+TH S + +NN L LG +++ ++ L K +
Sbjct: 3 LERLQKKLGYQFANLDYLTQALTHRSAASKNNERLEFLGDSILNFAIGKALYEKFPKANE 62
Query: 102 KDLNR 106
+L+R
Sbjct: 63 GELSR 67
>gi|333897188|ref|YP_004471062.1| ribonuclease 3 [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112453|gb|AEF17390.1| Ribonuclease 3 [Thermoanaerobacterium xylanolyticum LX-11]
Length = 232
Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 13/129 (10%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNKD 96
E L+K +GYTF + LL+ A+THSS++ E +N L LG V+ +S L
Sbjct: 8 ENLEKNMGYTFNNKKLLKNALTHSSWANESKNFLSSNERLEFLGDSVLSIVISEYLYKNR 67
Query: 97 IDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFRA 151
D+ L++ V E S + +D G +L + + ++ N +++ A A
Sbjct: 68 TDLEEGYLSKYRAEIVCEPSLARCAREIDIGKYLNIGRGEEMTGGRNR--DSILADAMEA 125
Query: 152 IFGAIAVDT 160
+ A+ +D+
Sbjct: 126 LIAAVYLDS 134
>gi|444426168|ref|ZP_21221592.1| ribonuclease III [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444240581|gb|ELU52119.1| ribonuclease III [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 225
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
+ +E L++++GY FK GL+ A+TH S + ++N L LG ++ ++ L ++ +
Sbjct: 3 SPIEKLERKLGYQFKDAGLINLALTHRSANSKHNERLEFLGDSILSFVIADDLYHRFPKV 62
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGA 155
+ D++ R+ T + A G L +++ P + +++ A AI GA
Sbjct: 63 NEGDMS-RMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGA 121
Query: 156 IAVDT 160
I +D+
Sbjct: 122 IYLDS 126
>gi|424034031|ref|ZP_17773441.1| ribonuclease III [Vibrio cholerae HENC-01]
gi|424042893|ref|ZP_17780558.1| ribonuclease III [Vibrio cholerae HENC-02]
gi|408873775|gb|EKM12964.1| ribonuclease III [Vibrio cholerae HENC-01]
gi|408884698|gb|EKM23431.1| ribonuclease III [Vibrio cholerae HENC-02]
Length = 225
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
+ +E L++++GY FK GL+ A+TH S + ++N L LG ++ ++ L ++ +
Sbjct: 3 SPIEKLERKLGYQFKDAGLINLALTHRSANSKHNERLEFLGDSILSFVIADDLYHRFPKV 62
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGA 155
+ D++ R+ T + A G L +++ P + +++ A AI GA
Sbjct: 63 NEGDMS-RMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGA 121
Query: 156 IAVDT 160
I +D+
Sbjct: 122 IYLDS 126
>gi|407001808|gb|EKE18718.1| hypothetical protein ACD_9C00254G0001 [uncultured bacterium]
Length = 233
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
+E+L K+IG F ++ LLR+A+TH S+ EN N L LG V++ ++ L N
Sbjct: 8 IESLAKKIGVKFDNVELLRQAVTHRSYLNENRDYALEHNERLEFLGDAVLELIITEHLYN 67
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS----PKTNSTVPAVVCGAFR 150
+ +L S N E+ V +G++K + +S ++ A
Sbjct: 68 -NYKNPEGELTSWRSALVNGEMLAHV-AQEIGVEKYLLMSRGEAKDKGRARQYLLANALE 125
Query: 151 AIFGAIAVDTG 161
AI GA +D G
Sbjct: 126 AIIGATYLDQG 136
>gi|254481213|ref|ZP_05094458.1| ribonuclease III [marine gamma proteobacterium HTCC2148]
gi|214038376|gb|EEB79038.1| ribonuclease III [marine gamma proteobacterium HTCC2148]
Length = 232
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
E LQ+ +GY F LL+ A+TH S NN L LG +++ ++ L + D
Sbjct: 9 ERLQRALGYQFADKSLLQLALTHRSVGGRNNERLEFLGDSIVNHIIAEALYRQFPDAREG 68
Query: 103 DLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
D++R V + E++ +D G HL L R S +++ A+ GAI
Sbjct: 69 DMSRMRASLVKGDTLAEVARELDLGEHLLLGPGERKSGGKRRG--SILADGLEAVAGAIL 126
Query: 158 VDT 160
+D+
Sbjct: 127 IDS 129
>gi|420412236|ref|ZP_14911365.1| ribonuclease III [Helicobacter pylori NQ4228]
gi|393027894|gb|EJB28982.1| ribonuclease III [Helicobacter pylori NQ4228]
Length = 239
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYV 83
R+ N ++P+AT L+K +GY+FK LL +A+TH S NN L LG V
Sbjct: 5 RSQNSPYVTPNNPYAT----LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAV 60
Query: 84 IDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN- 138
+ + L +K L++ VS +++ A+ LQ +RVS
Sbjct: 61 LGLVIGELLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEI 115
Query: 139 ---STVPAVVCGAFRAIFGAIAVDTG 161
P+++ AF A+ + ++ G
Sbjct: 116 SNGREKPSILSSAFEALMAGVYLEAG 141
>gi|389578334|ref|ZP_10168361.1| ribonuclease III [Desulfobacter postgatei 2ac9]
gi|389399969|gb|EIM62191.1| ribonuclease III [Desulfobacter postgatei 2ac9]
Length = 519
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L+ L++ + Y FKS L A+ H S+ EN N L LG V+ V L+
Sbjct: 292 LDLLEQNLDYRFKSRAFLSNALCHRSYLNENQNTCDTDNERLEFLGDAVLGVCVGHLLME 351
Query: 95 KDIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
D DL+R VSET I+ +D G + L K +S ++ +++ AF
Sbjct: 352 SDPLKKEGDLSRLRSNLVSETGLANIARRIDLGRFIKLGKGESLSGGSDKN--SILSDAF 409
Query: 150 RAIFGAIAVDTG 161
A+ A+ +D G
Sbjct: 410 EAVVAAVYLDAG 421
>gi|350532418|ref|ZP_08911359.1| ribonuclease III [Vibrio rotiferianus DAT722]
Length = 225
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
+ +E L++++GY FK GL+ A+TH S + ++N L LG ++ ++ L ++ +
Sbjct: 3 SPIEKLERKLGYQFKDAGLINLALTHRSANSKHNERLEFLGDSILSFVIADDLYHRFPKV 62
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGA 155
+ D++ R+ T + A G L +++ P + +++ A AI GA
Sbjct: 63 NEGDMS-RMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGA 121
Query: 156 IAVDT 160
I +D+
Sbjct: 122 IYLDS 126
>gi|320536816|ref|ZP_08036812.1| ribonuclease III [Treponema phagedenis F0421]
gi|320146325|gb|EFW37945.1| ribonuclease III [Treponema phagedenis F0421]
Length = 243
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSE------ENNRALGILGGYVIDTSVSLRLL 93
T L QK+ G+ FK++ LL A H SFS +NN L LG V+ + L
Sbjct: 14 TVLLNFQKKAGFKFKNLKLLNLAFHHRSFSHIHEASFQNNERLEFLGDSVLGLVTASCLY 73
Query: 94 NKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGA 148
N D S +L + VSE + +I+ ++D ++ L + +S A++ A
Sbjct: 74 NLLSDCSEGELAKTKAVLVSEETLSDIALSLDVDKYIMLGRGEEMSGGRRK--KAILADA 131
Query: 149 FRAIFGAIAVDTG 161
AI GA+ +D+G
Sbjct: 132 MEAIIGALYLDSG 144
>gi|399010523|ref|ZP_10712894.1| ribonuclease III [Pseudomonas sp. GM17]
gi|398106871|gb|EJL96886.1| ribonuclease III [Pseudomonas sp. GM17]
Length = 225
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L + L
Sbjct: 4 LERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPQAREGQL 63
Query: 105 NR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVD 159
+R R ++ G LG + +R+ + +++ A A+ GAI +D
Sbjct: 64 SRLRARLVKGETLAVLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALIGAIYLD 121
Query: 160 TG 161
G
Sbjct: 122 AG 123
>gi|424069074|ref|ZP_17806522.1| ribonuclease III [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424073514|ref|ZP_17810930.1| ribonuclease III [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407995629|gb|EKG36150.1| ribonuclease III [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|407995922|gb|EKG36425.1| ribonuclease III [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
Length = 225
Score = 43.1 bits (100), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L + L
Sbjct: 4 LERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPQAREGQL 63
Query: 105 NR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVD 159
+R R ++ G LG + +R+ + +++ A A+ GAI +D
Sbjct: 64 SRLRARLVKGETLALLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALIGAIYLD 121
Query: 160 TG 161
G
Sbjct: 122 AG 123
>gi|417851881|ref|ZP_12497549.1| ribonuclease III [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|338218195|gb|EGP03985.1| ribonuclease III [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
Length = 225
Score = 43.1 bits (100), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQ+QIGY F LL++A+TH S + ++N L LG +++ ++ L ++ +
Sbjct: 5 LERLQRQIGYQFNQPALLKQALTHRSAAVKHNERLEFLGDAILNFIIAEALYHQFPKCNE 64
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A L + + P + +++ AI GAI+
Sbjct: 65 GELS-RMRATLVREPTLASLARQFELGDYLSLGPGELKSGGFRRESILADCVEAIIGAIS 123
Query: 158 VDT 160
+D+
Sbjct: 124 LDS 126
>gi|409417807|ref|ZP_11257831.1| ribonuclease III [Pseudomonas sp. HYS]
Length = 229
Score = 43.1 bits (100), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK+ L+ A+TH SF+ NN L LG +++ L +
Sbjct: 2 SVSLSRLERQLGYTFKNQELMLLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPQ 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLAVLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDT 160
GAI +D+
Sbjct: 120 GAIYLDS 126
>gi|307260992|ref|ZP_07542674.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306869294|gb|EFN01089.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
Length = 243
Score = 43.1 bits (100), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++ Y F ++ L +A+TH S +NN L LG +++ ++ L K +
Sbjct: 23 LERLQKKLSYQFTNLDYLLQALTHRSAGAKNNERLEFLGDSILNFAIGKALFEKFPKANE 82
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A+ GL + +++ + +++ AI AI
Sbjct: 83 GELS-RMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIY 141
Query: 158 VDTG 161
+D G
Sbjct: 142 LDAG 145
>gi|307252103|ref|ZP_07534002.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306860403|gb|EFM92417.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
Length = 243
Score = 43.1 bits (100), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++ Y F ++ L +A+TH S +NN L LG +++ ++ L K +
Sbjct: 23 LERLQKKLSYQFTNLDYLLQALTHRSAGAKNNERLEFLGDSILNFAIGKALFEKFPKANE 82
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A+ GL + +++ + +++ AI AI
Sbjct: 83 GELS-RMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIY 141
Query: 158 VDTG 161
+D G
Sbjct: 142 LDAG 145
>gi|400975048|ref|ZP_10802279.1| ribonuclease III [Salinibacterium sp. PAMC 21357]
Length = 233
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 13/126 (10%)
Query: 58 LLRRAMTHSSFSEE-----NNRALGILGGYVIDTSVSLRLLNKDIDISPKDL-NRRVSET 111
LL A+TH SF+ E NN L LG ++ +V+++L + ++ DL RR S
Sbjct: 24 LLALALTHRSFAYENGGIANNERLEFLGDSILGQAVTVKLYRDNPNLDEGDLAKRRASLV 83
Query: 112 SNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDTGKCDDAG 167
S+V + A +GL +R+ T P+++ AI GA +D G D+A
Sbjct: 84 SSV--ALAEIARQIGLGAYIRLGKGEEQTGGREKPSILADTVEAIIGAAYLDQG-GDEAT 140
Query: 168 DVFLRV 173
+ LR+
Sbjct: 141 ALVLRL 146
>gi|357384164|ref|YP_004898888.1| ribonuclease III [Pelagibacterium halotolerans B2]
gi|351592801|gb|AEQ51138.1| ribonuclease III [Pelagibacterium halotolerans B2]
Length = 235
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSF------SEENNRALGILGGYVIDTSVSLRLLNKD 96
ETL+ ++GY FK LL RA+THSS + E+ + LG V+ V+ L +
Sbjct: 9 ETLEARLGYVFKDPALLLRALTHSSAVSPSKRTAESYQRFEFLGDRVLGLVVADMLCKRL 68
Query: 97 IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
+ +L+R ++ E +CA LG+ VR+ T A++ A+
Sbjct: 69 PKANEGELSRTLNSLVRKE-TCAKVARKLGMGSFVRLGESEARTGGADKDAILGDVCEAV 127
Query: 153 FGAIAVDTG 161
GAI D G
Sbjct: 128 IGAIYADGG 136
>gi|254439178|ref|ZP_05052672.1| ribonuclease III [Octadecabacter antarcticus 307]
gi|198254624|gb|EDY78938.1| ribonuclease III [Octadecabacter antarcticus 307]
Length = 229
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN---NRALGILGGYVIDTSVSLRLLN 94
+ AL Q +IG+TF L RA+THSS S N N+ L LG V+ +S LL
Sbjct: 3 LSGALREFQDRIGHTFAKPDQLIRAVTHSSMSSPNRDDNQRLEFLGDRVLGLVMSEALLQ 62
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
D++ L R + E +CA + L V+++ T A++ A
Sbjct: 63 ADVNAPEGLLAPRFNALVRKE-TCADVAREIDLGAVLKLGRSEMLTGGRRKEALLADAME 121
Query: 151 AIFGAIAVDTG 161
A+ A+ +D G
Sbjct: 122 AVIAAVYIDAG 132
>gi|222055246|ref|YP_002537608.1| Ribonuclease III [Geobacter daltonii FRC-32]
gi|221564535|gb|ACM20507.1| Ribonuclease III [Geobacter daltonii FRC-32]
Length = 238
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLL 93
++ L+K I Y F LL A+TH SF E +N+ L LG V+ +S L
Sbjct: 8 SIAALEKLINYDFTDKSLLVEALTHPSFVNESGGKVRQDNQRLEFLGDAVVGLVLSHDLF 67
Query: 94 NKDIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGA 148
++ D +L + V E S ++ A+D G HL L + S T P+++ A
Sbjct: 68 SRFPDSREGELTKLRASLVDEASLAILARAIDLGAHLKLGRGEERS--GGRTKPSLLADA 125
Query: 149 FRAIFGAIAVDTG 161
+ A+ A+ +D G
Sbjct: 126 YEALLAAVYLDGG 138
>gi|114320503|ref|YP_742186.1| ribonuclease III [Alkalilimnicola ehrlichii MLHE-1]
gi|122311783|sp|Q0A8Z1.1|RNC_ALHEH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|114226897|gb|ABI56696.1| RNAse III [Alkalilimnicola ehrlichii MLHE-1]
Length = 228
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 12/142 (8%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
T + LQ ++GY F+ LL A+TH S + +N L LG +++ ++ L ++ D
Sbjct: 3 TPKDALQDRLGYRFRRPELLDEALTHRSVTGPDNERLEFLGDGILNFVIADELYHRRPDA 62
Query: 100 SPKDLNRRVSETSN----VEISCAVD---GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAI 152
+ L+R + N EI +D + LG ++ + S ++ A A+
Sbjct: 63 TEGVLSRLRATLVNGRTLAEIGKGLDVGTALRLGGGEMKSGGQRRKS----ILADAVEAL 118
Query: 153 FGAIAVDTGKCDDAGDVFLRVH 174
FGAI +D G D + + LR++
Sbjct: 119 FGAIYLDGG-FDPSRETILRLY 139
>gi|148907962|gb|ABR17101.1| unknown [Picea sitchensis]
Length = 685
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 7/127 (5%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENN---RALGILGGYVIDTSVSLRLLNKDID 98
++ L++ +GY F GLL A H SF+E N + L LG V+D ++ L + D
Sbjct: 222 IDELERLLGYNFSYKGLLLEAFAHPSFNEHNGGCYQRLEFLGDAVLDYIITSYLYSVYPD 281
Query: 99 ISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAV 158
+ P L S T N E V H +++ S +S V V +A+F A
Sbjct: 282 MKPGYLTDMRSMTVNNESFACVAVRHGLYMYLIQKSDSLSSAVTKYV-DFMKALFTA--- 337
Query: 159 DTGKCDD 165
D CD+
Sbjct: 338 DRDSCDE 344
>gi|412341945|ref|YP_006970700.1| ribonuclease III [Bordetella bronchiseptica 253]
gi|408771779|emb|CCJ56583.1| ribonuclease III [Bordetella bronchiseptica 253]
Length = 256
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
A +L TL+ ++ + F LL +A+TH S +N L LG V++ V+ L +
Sbjct: 3 AMSLATLETRLDHRFGDKALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYGK 62
Query: 99 ISPKDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
+ DL+R V + S +I+ +D L + +R+ + P+++
Sbjct: 63 LDEGDLSRLRANLVKQASLADIAQRLD-----LSQYLRLGEGELKSGGFRRPSILADTVE 117
Query: 151 AIFGAIAVDTG 161
A+FGA+ +D G
Sbjct: 118 ALFGAVFLDAG 128
>gi|392988132|ref|YP_006486725.1| ribonuclease III [Enterococcus hirae ATCC 9790]
gi|392335552|gb|AFM69834.1| ribonuclease III [Enterococcus hirae ATCC 9790]
Length = 228
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 22/133 (16%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
L+++ F + LL +A THSS+ E +N L LG V++ VS L
Sbjct: 9 LKEKYTIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSEYLYRLYP 68
Query: 98 DISPKDLNR------RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS---TVPAVVCGA 148
DI L + R S C D + ++ + NS T PA++C
Sbjct: 69 DIPEGKLTKTRAAIVREDSLSKFAKECGFD------KYIMLGKGEENSGGRTRPALLCDL 122
Query: 149 FRAIFGAIAVDTG 161
F A GA+ +D G
Sbjct: 123 FEAFLGALYLDQG 135
>gi|386286485|ref|ZP_10063675.1| ribonuclease III [gamma proteobacterium BDW918]
gi|385280635|gb|EIF44557.1| ribonuclease III [gamma proteobacterium BDW918]
Length = 225
Score = 43.1 bits (100), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L+ + ++IGY FK LL AMTH SFS NN + LG +++ ++ L + D+
Sbjct: 3 SLDEVCQKIGYHFKDSELLTMAMTHRSFSAVNNERVEFLGDSLLNMIIAEALYLRFPDVD 62
Query: 101 PKDLNR 106
DL+R
Sbjct: 63 EGDLSR 68
>gi|417843773|ref|ZP_12489841.1| Ribonuclease 3 [Haemophilus haemolyticus M21127]
gi|341948686|gb|EGT75306.1| Ribonuclease 3 [Haemophilus haemolyticus M21127]
Length = 227
Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ L+++IGY F +I LL++A+TH S + ++N L LG +++ +++ L ++ +
Sbjct: 4 LDRLERKIGYRFNNIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNE 63
Query: 102 KDLNRRVSETSNVEISCAV--------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+ R+ T E + A+ D M LG ++ + S + V AI
Sbjct: 64 GELS-RMRATLVREPTLAMLARQFELGDYMSLGSGELKSGGFRRESILADCV----EAII 118
Query: 154 GAIAVDTG 161
GA+++D G
Sbjct: 119 GAMSLDQG 126
>gi|307247515|ref|ZP_07529560.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|307249746|ref|ZP_07531725.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|307254355|ref|ZP_07536193.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307258813|ref|ZP_07540545.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|306856018|gb|EFM88176.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|306858254|gb|EFM90331.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306862654|gb|EFM94610.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306867164|gb|EFM99020.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
Length = 243
Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++ Y F ++ L +A+TH S +NN L LG +++ ++ L K +
Sbjct: 23 LERLQKKLSYQFTNLDYLLQALTHRSAGAKNNERLEFLGDSILNFAIGKALFEKFPKANE 82
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A+ GL + +++ + +++ AI AI
Sbjct: 83 GELS-RMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIY 141
Query: 158 VDTG 161
+D G
Sbjct: 142 LDAG 145
>gi|239906016|ref|YP_002952755.1| ribonuclease III [Desulfovibrio magneticus RS-1]
gi|239795880|dbj|BAH74869.1| ribonuclease III [Desulfovibrio magneticus RS-1]
Length = 243
Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 49 IGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
+G+ F + LL A+THSS + E +N L LG V++ VS L + +
Sbjct: 22 LGHEFATPALLATALTHSSCANERGEGTRHNERLEFLGDAVLELCVSEELFSLFPEAPEG 81
Query: 103 DLNRRVSETSNVEISCAVDGMHLGLQKVVRV----SPKTNSTVPAVVCGAFRAIFGAIAV 158
+L S+ N E S A + LGL VR+ + + P+++ F A+ GAI +
Sbjct: 82 ELTLLRSQLVN-EASLAAMALRLGLAGHVRLGRGEENQGGRSRPSLLSDVFEAVVGAIFL 140
Query: 159 DTG 161
D G
Sbjct: 141 DGG 143
>gi|15595967|ref|NP_249461.1| ribonuclease III [Pseudomonas aeruginosa PAO1]
gi|107100231|ref|ZP_01364149.1| hypothetical protein PaerPA_01001254 [Pseudomonas aeruginosa PACS2]
gi|116048686|ref|YP_792514.1| ribonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893287|ref|YP_002442156.1| ribonuclease III [Pseudomonas aeruginosa LESB58]
gi|254239132|ref|ZP_04932455.1| ribonuclease III [Pseudomonas aeruginosa C3719]
gi|254245025|ref|ZP_04938347.1| ribonuclease III [Pseudomonas aeruginosa 2192]
gi|296390880|ref|ZP_06880355.1| ribonuclease III [Pseudomonas aeruginosa PAb1]
gi|313105592|ref|ZP_07791858.1| ribonuclease III [Pseudomonas aeruginosa 39016]
gi|355647247|ref|ZP_09054933.1| ribonuclease 3 [Pseudomonas sp. 2_1_26]
gi|386060329|ref|YP_005976851.1| ribonuclease III [Pseudomonas aeruginosa M18]
gi|386064443|ref|YP_005979747.1| ribonuclease III [Pseudomonas aeruginosa NCGM2.S1]
gi|392985750|ref|YP_006484337.1| ribonuclease III [Pseudomonas aeruginosa DK2]
gi|416858214|ref|ZP_11913210.1| ribonuclease III [Pseudomonas aeruginosa 138244]
gi|416876829|ref|ZP_11919463.1| ribonuclease III [Pseudomonas aeruginosa 152504]
gi|418586884|ref|ZP_13150921.1| ribonuclease III [Pseudomonas aeruginosa MPAO1/P1]
gi|418589135|ref|ZP_13153064.1| ribonuclease III [Pseudomonas aeruginosa MPAO1/P2]
gi|419752732|ref|ZP_14279138.1| ribonuclease III [Pseudomonas aeruginosa PADK2_CF510]
gi|420141304|ref|ZP_14648996.1| ribonuclease III [Pseudomonas aeruginosa CIG1]
gi|421155064|ref|ZP_15614550.1| ribonuclease III [Pseudomonas aeruginosa ATCC 14886]
gi|421158827|ref|ZP_15618023.1| ribonuclease III [Pseudomonas aeruginosa ATCC 25324]
gi|421169883|ref|ZP_15627886.1| ribonuclease III [Pseudomonas aeruginosa ATCC 700888]
gi|421176238|ref|ZP_15633905.1| ribonuclease III [Pseudomonas aeruginosa CI27]
gi|421182259|ref|ZP_15639741.1| ribonuclease III [Pseudomonas aeruginosa E2]
gi|421515390|ref|ZP_15962076.1| ribonuclease III [Pseudomonas aeruginosa PAO579]
gi|424939814|ref|ZP_18355577.1| ribonuclease III [Pseudomonas aeruginosa NCMG1179]
gi|451987667|ref|ZP_21935820.1| Ribonuclease III [Pseudomonas aeruginosa 18A]
gi|7531195|sp|Q9XCX9.1|RNC_PSEAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|122257792|sp|Q02HS2.1|RNC_PSEAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|226735378|sp|B7UYX2.1|RNC_PSEA8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|5114183|gb|AAD40229.1|AF123492_1 RNase III [Pseudomonas aeruginosa PAK]
gi|9946659|gb|AAG04159.1|AE004512_2 ribonuclease III [Pseudomonas aeruginosa PAO1]
gi|115583907|gb|ABJ09922.1| ribonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
gi|126171063|gb|EAZ56574.1| ribonuclease III [Pseudomonas aeruginosa C3719]
gi|126198403|gb|EAZ62466.1| ribonuclease III [Pseudomonas aeruginosa 2192]
gi|218773515|emb|CAW29327.1| ribonuclease III [Pseudomonas aeruginosa LESB58]
gi|310878360|gb|EFQ36954.1| ribonuclease III [Pseudomonas aeruginosa 39016]
gi|334839726|gb|EGM18401.1| ribonuclease III [Pseudomonas aeruginosa 138244]
gi|334840282|gb|EGM18940.1| ribonuclease III [Pseudomonas aeruginosa 152504]
gi|346056260|dbj|GAA16143.1| ribonuclease III [Pseudomonas aeruginosa NCMG1179]
gi|347306635|gb|AEO76749.1| ribonuclease III [Pseudomonas aeruginosa M18]
gi|348033002|dbj|BAK88362.1| ribonuclease III [Pseudomonas aeruginosa NCGM2.S1]
gi|354828012|gb|EHF12143.1| ribonuclease 3 [Pseudomonas sp. 2_1_26]
gi|375042503|gb|EHS35152.1| ribonuclease III [Pseudomonas aeruginosa MPAO1/P1]
gi|375052027|gb|EHS44487.1| ribonuclease III [Pseudomonas aeruginosa MPAO1/P2]
gi|384400862|gb|EIE47219.1| ribonuclease III [Pseudomonas aeruginosa PADK2_CF510]
gi|392321255|gb|AFM66635.1| ribonuclease III [Pseudomonas aeruginosa DK2]
gi|403245948|gb|EJY59712.1| ribonuclease III [Pseudomonas aeruginosa CIG1]
gi|404349118|gb|EJZ75455.1| ribonuclease III [Pseudomonas aeruginosa PAO579]
gi|404521095|gb|EKA31724.1| ribonuclease III [Pseudomonas aeruginosa ATCC 14886]
gi|404525517|gb|EKA35782.1| ribonuclease III [Pseudomonas aeruginosa ATCC 700888]
gi|404531046|gb|EKA41012.1| ribonuclease III [Pseudomonas aeruginosa CI27]
gi|404542419|gb|EKA51739.1| ribonuclease III [Pseudomonas aeruginosa E2]
gi|404549253|gb|EKA58166.1| ribonuclease III [Pseudomonas aeruginosa ATCC 25324]
gi|451754657|emb|CCQ88343.1| Ribonuclease III [Pseudomonas aeruginosa 18A]
gi|453044570|gb|EME92293.1| ribonuclease III [Pseudomonas aeruginosa PA21_ST175]
Length = 229
Score = 43.1 bits (100), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
+ +L+ L++++GYTFK L+ A+TH S++ NN L LG +++ + L +
Sbjct: 1 MSNSLDRLERKLGYTFKDRDLMVLALTHRSYAGRNNERLEFLGDAILNFVIGEALFHHFP 60
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
L+R R ++ G +G +R+ + +++ A A+
Sbjct: 61 QAREGQLSRLRARLVKGETLALLARGFEVG--DYLRLGSGELKSGGFRRESILADAMEAL 118
Query: 153 FGAIAVDTG 161
GAI +DTG
Sbjct: 119 IGAIYLDTG 127
>gi|420396496|ref|ZP_14895715.1| ribonuclease III [Helicobacter pylori CPY1313]
gi|393013354|gb|EJB14530.1| ribonuclease III [Helicobacter pylori CPY1313]
Length = 239
Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 35 SSPFAT---ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+AT + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYATLNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMH--------LGLQKVVRVSPKTN---- 138
L +K L++ + ++ H + LQ +RVS
Sbjct: 68 LLYHKFYQYDEGKLSK---------LRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKG 118
Query: 139 STVPAVVCGAFRAIFGAIAVDTG 161
P+++ AF A+ + ++ G
Sbjct: 119 REKPSILSSAFEALMAGVYLEAG 141
>gi|33152642|ref|NP_873995.1| ribonuclease III [Haemophilus ducreyi 35000HP]
gi|73917578|sp|Q7VL75.1|RNC_HAEDU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|33148866|gb|AAP96384.1| ribonuclease III [Haemophilus ducreyi 35000HP]
Length = 222
Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
+E LQK+IGY F ++ L +A+TH S + +NN L LG +++ ++ L + +
Sbjct: 3 IERLQKKIGYQFANLDYLLQALTHRSAAAKNNERLEFLGDSILNYAIGQALFERFPQANE 62
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A+ L + +++ + +++ AI AI
Sbjct: 63 GELS-RMRATLVREQTLAILARQFDLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIY 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDAG 125
>gi|33593415|ref|NP_881059.1| ribonuclease III [Bordetella pertussis Tohama I]
gi|33597819|ref|NP_885462.1| ribonuclease III [Bordetella parapertussis 12822]
gi|33602721|ref|NP_890281.1| ribonuclease III [Bordetella bronchiseptica RB50]
gi|384204710|ref|YP_005590449.1| ribonuclease III [Bordetella pertussis CS]
gi|408416453|ref|YP_006627160.1| ribonuclease III [Bordetella pertussis 18323]
gi|410473788|ref|YP_006897069.1| ribonuclease III [Bordetella parapertussis Bpp5]
gi|427815737|ref|ZP_18982801.1| ribonuclease III [Bordetella bronchiseptica 1289]
gi|427818292|ref|ZP_18985355.1| ribonuclease III [Bordetella bronchiseptica D445]
gi|427825850|ref|ZP_18992912.1| ribonuclease III [Bordetella bronchiseptica Bbr77]
gi|81424808|sp|Q7VW39.1|RNC_BORPE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|81426476|sp|Q7W5J6.1|RNC_BORPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|81429935|sp|Q7WD32.1|RNC_BORBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|33572771|emb|CAE42703.1| ribonuclease III [Bordetella pertussis Tohama I]
gi|33574248|emb|CAE38580.1| ribonuclease III [Bordetella parapertussis]
gi|33577163|emb|CAE35720.1| ribonuclease III [Bordetella bronchiseptica RB50]
gi|332382824|gb|AEE67671.1| ribonuclease III [Bordetella pertussis CS]
gi|401778623|emb|CCJ64063.1| ribonuclease III [Bordetella pertussis 18323]
gi|408443898|emb|CCJ50592.1| ribonuclease III [Bordetella parapertussis Bpp5]
gi|410566737|emb|CCN24306.1| ribonuclease III [Bordetella bronchiseptica 1289]
gi|410569292|emb|CCN17385.1| ribonuclease III [Bordetella bronchiseptica D445]
gi|410591115|emb|CCN06212.1| ribonuclease III [Bordetella bronchiseptica Bbr77]
Length = 256
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
A +L TL+ ++ + F LL +A+TH S +N L LG V++ V+ L +
Sbjct: 3 AMSLATLETRLDHRFGDKALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYGK 62
Query: 99 ISPKDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
+ DL+R V + S +I+ +D L + +R+ + P+++
Sbjct: 63 LDEGDLSRLRANLVKQASLADIAQRLD-----LSQYLRLGEGELKSGGFRRPSILADTVE 117
Query: 151 AIFGAIAVDTG 161
A+FGA+ +D G
Sbjct: 118 ALFGAVFLDAG 128
>gi|332981630|ref|YP_004463071.1| ribonuclease III [Mahella australiensis 50-1 BON]
gi|332699308|gb|AEE96249.1| ribonuclease III [Mahella australiensis 50-1 BON]
Length = 228
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTSVSLRLLNKD 96
L+ L +GY F I L A+THSS++ E+ N L +LG V++ ++ L
Sbjct: 4 LKELMDLLGYRFNDINKLDEALTHSSYAYEHGLDYYNERLELLGDSVLNIIITDYLFVTY 63
Query: 97 IDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFRA 151
++S +L++ VSE +++ A++ G +L L + ++S P+ + A
Sbjct: 64 PELSEGNLSKLRSNIVSEKPLYKVAAAMNLGSYLLLSRGEKLS--HGDMRPSTLADTVEA 121
Query: 152 IFGAIAVDTGKCDDAGDVFL 171
I GA+ +D G DA VF+
Sbjct: 122 IIGAVYLDGGF--DAAKVFV 139
>gi|307263177|ref|ZP_07544798.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|306871539|gb|EFN03262.1| Ribonuclease 3 [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
Length = 243
Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++ Y F ++ L +A+TH S +NN L LG +++ ++ L K +
Sbjct: 23 LERLQKKLSYQFTNLDYLLQALTHRSAGAKNNERLEFLGDSILNFAIGKALFEKFPKANE 82
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A+ GL + +++ + +++ AI AI
Sbjct: 83 GELS-RMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIY 141
Query: 158 VDTG 161
+D G
Sbjct: 142 LDAG 145
>gi|148244713|ref|YP_001219407.1| ribonuclease III [Candidatus Vesicomyosocius okutanii HA]
gi|146326540|dbj|BAF61683.1| ribonuclease III [Candidatus Vesicomyosocius okutanii HA]
Length = 221
Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNK 95
++ LQK+I Y FK + LL+ A+TH S NN L LG ++ ++S L +
Sbjct: 1 MKKLQKKINYQFKDLSLLKLALTHRSTGRNNNERLEFLGDSILGVAISKELYQR 54
>gi|220928138|ref|YP_002505047.1| ribonuclease III [Clostridium cellulolyticum H10]
gi|219998466|gb|ACL75067.1| ribonuclease III [Clostridium cellulolyticum H10]
Length = 236
Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSL 90
+ + L+ IGYTFK+ ++ A+THSS++ E N L LG V+ ++S
Sbjct: 6 YDNRISELEDIIGYTFKNKDIIFAAVTHSSYANEKKSRKLKYNERLEFLGDSVLGLTISE 65
Query: 91 RLLNKDIDISPKDLN--RRVSETSNVEISCAVD---GMHLGLQKVVRVSPKTNSTVPAVV 145
L K ++ +L+ R N CA D G +L L K +S +++
Sbjct: 66 YLFQKKPNLPEGELSVTRAKIVCENSLSQCATDIGLGKYLLLGKGEELSGGREKI--SLL 123
Query: 146 CGAFRAIFGAIAVDTG 161
AF A+ GA+ +D G
Sbjct: 124 SDAFEALIGALYIDGG 139
>gi|425064814|ref|ZP_18467934.1| Ribonuclease III [Pasteurella multocida subsp. gallicida P1059]
gi|404384529|gb|EJZ80962.1| Ribonuclease III [Pasteurella multocida subsp. gallicida P1059]
Length = 225
Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQ+QIGY F LL++A+TH S + ++N L LG +++ ++ L ++ +
Sbjct: 5 LERLQRQIGYHFNQPALLKQALTHRSAAVKHNERLEFLGDAILNFIIAEALYHQFPKCNE 64
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A L + + P + +++ AI GAI+
Sbjct: 65 GELS-RMRATLVREPTLASLARQFELGDYLSLGPGELKSGGFRRESILADCVEAIIGAIS 123
Query: 158 VDT 160
+D+
Sbjct: 124 LDS 126
>gi|383310849|ref|YP_005363659.1| ribonuclease III [Pasteurella multocida subsp. multocida str. HN06]
gi|425062740|ref|ZP_18465865.1| Ribonuclease III [Pasteurella multocida subsp. gallicida X73]
gi|380872121|gb|AFF24488.1| ribonuclease III [Pasteurella multocida subsp. multocida str. HN06]
gi|404383446|gb|EJZ79897.1| Ribonuclease III [Pasteurella multocida subsp. gallicida X73]
Length = 225
Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQ+QIGY F LL++A+TH S + ++N L LG +++ ++ L ++ +
Sbjct: 5 LERLQRQIGYHFNQPALLKQALTHRSAAVKHNERLEFLGDAILNFIIAEALYHQFPKCNE 64
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A L + + P + +++ AI GAI+
Sbjct: 65 GELS-RMRATLVREPTLASLARQFELGDYLSLGPGELKSGGFRRESILADCVEAIIGAIS 123
Query: 158 VDT 160
+D+
Sbjct: 124 LDS 126
>gi|303251584|ref|ZP_07337758.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|302649582|gb|EFL79764.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
Length = 223
Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++ Y F ++ L +A+TH S +NN L LG +++ ++ L K +
Sbjct: 3 LERLQKKLSYQFTNLDYLLQALTHRSAGAKNNERLEFLGDSILNFAIGKALFEKFPKANE 62
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A+ GL + +++ + +++ AI AI
Sbjct: 63 GELS-RMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIY 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDAG 125
>gi|404378090|ref|ZP_10983189.1| ribonuclease III [Simonsiella muelleri ATCC 29453]
gi|294483954|gb|EFG31637.1| ribonuclease III [Simonsiella muelleri ATCC 29453]
Length = 235
Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 35 SSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLN 94
S+P A + LQ++I + FK+ L+++A+TH S+S +N L +G +++ V+ L
Sbjct: 3 STPRQVAQQKLQQEINFLFKNPNLIQQALTHRSYSSQNYERLEFIGDSILNYVVAKMLYE 62
Query: 95 KDIDISPKDLN----RRVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCG 147
+ L+ + V E + +I+ + D + LG+ ++ +++
Sbjct: 63 AFPKLPEGRLSPLRAQLVKEATLADIARQLHIGDALFLGVGEL----KSGGHDRASILAD 118
Query: 148 AFRAIFGAIAVDT 160
A A+F AI++D+
Sbjct: 119 ALEALFAAISLDS 131
>gi|386752652|ref|YP_006225871.1| ribonuclease III [Helicobacter pylori Shi169]
gi|384558910|gb|AFH99377.1| ribonuclease III [Helicobacter pylori Shi169]
Length = 239
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 35 SSPFAT---ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+AT + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYATLNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMH--------LGLQKVVRVSPKTN---- 138
L +K L++ + ++ H + LQ +RVS
Sbjct: 68 LLYHKFYQYDEGKLSK---------LRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNG 118
Query: 139 STVPAVVCGAFRAIFGAIAVDTG 161
P+++ AF A+ + ++ G
Sbjct: 119 REKPSILSSAFEALMAGVYLEAG 141
>gi|444376449|ref|ZP_21175693.1| Ribonuclease III [Enterovibrio sp. AK16]
gi|443679427|gb|ELT86083.1| Ribonuclease III [Enterovibrio sp. AK16]
Length = 224
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 5/127 (3%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
T + LQ++IGY F LL A+TH S S +N L LG ++ V+ L ++
Sbjct: 1 MTTPINKLQRRIGYEFSDAALLSLALTHRSASGNHNERLEFLGDSILSFVVADDLYHRFP 60
Query: 98 DISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
++ D++ R+ T + A G L V+++ P + +++ A AI
Sbjct: 61 NVDEGDMS-RMRATLVRGNTLAELGREFELGDVLQLGPGELKSGGFRRDSILADAVEAII 119
Query: 154 GAIAVDT 160
GAI +D+
Sbjct: 120 GAIYLDS 126
>gi|421719742|ref|ZP_16159026.1| ribonuclease III [Helicobacter pylori R046Wa]
gi|407221065|gb|EKE90870.1| ribonuclease III [Helicobacter pylori R046Wa]
Length = 239
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 35 SSPFAT---ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYITPNSSYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + +++G
Sbjct: 123 SILSSAFEALMAGVYLESG 141
>gi|407010671|gb|EKE25500.1| hypothetical protein ACD_5C00137G0005 [uncultured bacterium]
Length = 229
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
+E+L K+IG F I +LR+A+TH SF EN N L LG V++ ++ L N
Sbjct: 4 VESLAKKIGVEFNDIEILRQAVTHRSFLNENRDHNLEHNERLEFLGDAVLELIITEYLYN 63
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS----PKTNSTVPAVVCGAFR 150
+ +L S N E+ V +G+++ + +S T ++ A
Sbjct: 64 -NYKNPEGELTSWRSALVNGEMLAHV-AQEIGVEEFLLMSRGEAKDTGRARQYLLANAME 121
Query: 151 AIFGAIAVDTG 161
AI GA +D G
Sbjct: 122 AIIGATYLDQG 132
>gi|402313792|ref|ZP_10832702.1| ribonuclease III [Lachnospiraceae bacterium ICM7]
gi|400365574|gb|EJP18625.1| ribonuclease III [Lachnospiraceae bacterium ICM7]
Length = 232
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L LQ+ +GY +K+ LL +A+THSS++ E+ N L LG V++ VS
Sbjct: 5 LNELQELLGYEYKNKELLNQALTHSSYANEHQLGKNGSNERLEFLGDAVLEL-VSSEFFY 63
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
P+ ++ E + A ++ L K +++ T P+++ AF
Sbjct: 64 GVYPDKPEGELTKIRAGFVCEAALADCAKNIKLSKFLKLGKGEEHTGGRMRPSIISDAFE 123
Query: 151 AIFGAIAVDTGKCDDAGDVFLR 172
A+ G+I +D G +A +V L+
Sbjct: 124 ALIGSIYLDGGFA-NAKEVILK 144
>gi|430750346|ref|YP_007213254.1| ribonuclease III [Thermobacillus composti KWC4]
gi|430734311|gb|AGA58256.1| ribonuclease III [Thermobacillus composti KWC4]
Length = 233
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
+ LQ+Q+G FK GLL++A TH+S+ E +N L LG V+ VS L
Sbjct: 6 FDQLQQQLGIRFKRTGLLKQAFTHTSYVNEHKSGNAQDNERLEFLGDAVMQLLVSEHLYL 65
Query: 95 KDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKT--NSTVPAVVCGAFRA 151
+L R R S + + + LG ++ + T PA++ F +
Sbjct: 66 MHPRRPEGELTRMRASIVCEPSFAKFAETLDLGRYVLLGRGEEQLGGRTRPALLADLFES 125
Query: 152 IFGAIAVDTGKCDDAGDVFLRVH 174
GA+ +D+G +A FL+ H
Sbjct: 126 FIGALYLDSGL--EAVREFLKRH 146
>gi|384156209|ref|YP_005539024.1| ribonuclease III [Arcobacter butzleri ED-1]
gi|345469763|dbj|BAK71214.1| ribonuclease III [Arcobacter butzleri ED-1]
Length = 224
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSE-ENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
L+K + Y FK+ L+ A+TH SF + NN L LG V++ V L K + +
Sbjct: 7 LEKCLDYQFKNKNLIIEALTHKSFKKPYNNERLEFLGDAVLNLIVGEYLYLKFPKSNEGE 66
Query: 104 LNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIAVDT 160
L++ R S + + + + LG + + + N T +++ AF AI GAI +++
Sbjct: 67 LSKIRASLVNETGFTRLANEIKLGEYIFISTAEERNKGRTKASILSDAFEAIMGAIYLES 126
Query: 161 G 161
G
Sbjct: 127 G 127
>gi|307244287|ref|ZP_07526402.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678]
gi|306492437|gb|EFM64475.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678]
Length = 235
Score = 42.7 bits (99), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 9/139 (6%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTSVSLRLLNK 95
++ +++IGY FK+ ++ A+THSSF+ E+ N L LG V+ VS L
Sbjct: 11 SIRAFEEKIGYEFKNKTYIQTALTHSSFANEHKEFNYNERLEFLGDSVLGLVVSDYLFRA 70
Query: 96 DIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAI 152
D+ L R R + +S ++LG + KT+ S +++ A A+
Sbjct: 71 RNDLPEGKLTRLRANVVCEESLSAVARKINLGDHLFLGKGEKTSGGSDRDSILADATEAV 130
Query: 153 FGAIAVDTGKCDDAGDVFL 171
AI +D G D A D L
Sbjct: 131 IAAIYLDGG-FDQAKDFIL 148
>gi|421504665|ref|ZP_15951606.1| ribonuclease III [Pseudomonas mendocina DLHK]
gi|400344623|gb|EJO92992.1| ribonuclease III [Pseudomonas mendocina DLHK]
Length = 229
Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L++++GY+FK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 5 LSRLERKLGYSFKDQDLMILALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPQARE 64
Query: 102 KDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
L+R R ++ G LG + +R+ + +++ A A+ GAI
Sbjct: 65 GQLSRLRARLVKGETLAVLARGFELG--EYLRLGSGELKSGGFRRESILADALEALIGAI 122
Query: 157 AVDTGKCDDAGDVFLRVHSGEV 178
+D G D A + L SGE+
Sbjct: 123 YLDAG-MDAARERVLDWLSGEL 143
>gi|339053279|ref|ZP_08648023.1| Ribonuclease III [gamma proteobacterium IMCC2047]
gi|330721516|gb|EGG99556.1| Ribonuclease III [gamma proteobacterium IMCC2047]
Length = 210
Score = 42.7 bits (99), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L + +GY F+ LL+ A+THSSF + +N L LG ++ ++ L +
Sbjct: 5 LAKLSQSLGYQFRDESLLQTALTHSSFGQGHNERLEFLGDSILGWVIADALFKRFPHARE 64
Query: 102 KDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
L+R R V ++ + LG +R+ + +++ AF AI GAI
Sbjct: 65 GQLSRLRAGLVKGVTLAKVARELQLG--HYLRLGQGEMKSGGFRRDSILADAFEAIIGAI 122
Query: 157 AVDT 160
+D+
Sbjct: 123 FLDS 126
>gi|420447011|ref|ZP_14945905.1| ribonuclease III [Helicobacter pylori Hp H-43]
gi|393063984|gb|EJB64824.1| ribonuclease III [Helicobacter pylori Hp H-43]
Length = 239
Score = 42.7 bits (99), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 35 SSPFAT---ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEVG 141
>gi|167854942|ref|ZP_02477717.1| GTP-binding protein LepA [Haemophilus parasuis 29755]
gi|167853899|gb|EDS25138.1| GTP-binding protein LepA [Haemophilus parasuis 29755]
Length = 223
Score = 42.7 bits (99), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNK 95
LE LQK++GY F ++ L +A+TH S + +NN L LG +++ ++ L K
Sbjct: 3 LERLQKKLGYQFANLDYLTQALTHRSAASKNNERLEFLGDSILNFAIGKALYEK 56
>gi|303252175|ref|ZP_07338343.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|302648958|gb|EFL79146.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
Length = 223
Score = 42.7 bits (99), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++ Y F ++ L +A+TH S +NN L LG +++ ++ L K +
Sbjct: 3 LERLQKKLSYQFTNLDYLLQALTHRSAGAKNNERLEFLGDSILNFAIGKALFEKFPKANE 62
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A+ GL + +++ + +++ AI AI
Sbjct: 63 GELS-RMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIY 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDAG 125
>gi|260881779|ref|ZP_05893556.1| ribonuclease III [Mitsuokella multacida DSM 20544]
gi|260847870|gb|EEX67877.1| ribonuclease III [Mitsuokella multacida DSM 20544]
Length = 247
Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNKDID 98
L +++G TF I LL +A+TH+S++ E +N L LG V++ + S L +
Sbjct: 20 LSERLGVTFHDIALLDQALTHTSYANESKRNTAHNERLEFLGDAVLELASSTYLYEHFPE 79
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLG--LQKVVRVSPKTNSTVPAVVCGAFRAIFGA 155
+ +L + R S + ++ G+HLG L T + F A+ GA
Sbjct: 80 MPEGELTKTRASIVCSTTLAKLATGLHLGDYLLLGRGEEMGGGRTRQTNLEDVFEAVIGA 139
Query: 156 IAVDTG 161
+ +D G
Sbjct: 140 VYLDQG 145
>gi|88797948|ref|ZP_01113535.1| ribonuclease III [Reinekea blandensis MED297]
gi|88779145|gb|EAR10333.1| ribonuclease III [Reinekea sp. MED297]
Length = 219
Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
+ K IGY F+S LL +A+TH S++ +NN L LG +++ +++ L ++ + +
Sbjct: 1 MTKAIGYQFESESLLEQALTHRSYARKNNERLEFLGDAILNCTIAQALYHQFPNAKEGQM 60
Query: 105 NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVD 159
+R + + + G L + +R+ + +++ A AI GAI++D
Sbjct: 61 SRLRAHLVKGDTLAEI-GREFELGEFLRLGSGELKSGGFRRDSILADAVEAIIGAISLD 118
>gi|157737847|ref|YP_001490531.1| ribonuclease III [Arcobacter butzleri RM4018]
gi|315637636|ref|ZP_07892842.1| ribonuclease III [Arcobacter butzleri JV22]
gi|189043289|sp|A8EV88.1|RNC_ARCB4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157699701|gb|ABV67861.1| ribonuclease III [Arcobacter butzleri RM4018]
gi|315478090|gb|EFU68817.1| ribonuclease III [Arcobacter butzleri JV22]
Length = 224
Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSE-ENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
L+K + Y FK+ L+ A+TH SF + NN L LG V++ V L K + +
Sbjct: 7 LEKCLDYQFKNKNLIIEALTHKSFKKPYNNERLEFLGDAVLNLIVGEYLYLKFPKSNEGE 66
Query: 104 LNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIAVDT 160
L++ R S + + + + LG + + + N T +++ AF AI GAI +++
Sbjct: 67 LSKIRASLVNETGFTRLANEIKLGEYIFISTAEERNKGRTKASILSDAFEAIMGAIYLES 126
Query: 161 G 161
G
Sbjct: 127 G 127
>gi|225159274|ref|ZP_03725574.1| Ribonuclease III [Diplosphaera colitermitum TAV2]
gi|224802127|gb|EEG20399.1| Ribonuclease III [Diplosphaera colitermitum TAV2]
Length = 250
Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 19/137 (13%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSF------SEENNRALGILGGYVIDTSVSLRL 92
+ AL LQ +IG+ F + LL A+TH S+ + +NN+ L +LG D + L L
Sbjct: 18 SAALAALQMRIGHKFTTPALLETAITHPSWLQDNPGAPDNNQRLELLG----DAVLQLLL 73
Query: 93 LNKDIDISPKDLNRRVSETSNVEIS----CAVDGMHLGLQKVVRVSPKTNST----VPAV 144
++ + P D +S+ V +S A +GL V+R+S T +
Sbjct: 74 THELYTLFPTDREGPLSKRRAV-LSRGGFLAQLAREVGLDTVLRLSASEEQTGGRQRDSA 132
Query: 145 VCGAFRAIFGAIAVDTG 161
+ AF A+FGA+ +D G
Sbjct: 133 LEDAFEALFGALYLDAG 149
>gi|49081844|gb|AAT50322.1| PA0770, partial [synthetic construct]
Length = 230
Score = 42.7 bits (99), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
+ +L+ L++++GYTFK L+ A+TH S++ NN L LG +++ + L +
Sbjct: 1 MSNSLDRLERKLGYTFKDRDLMVLALTHRSYAGRNNERLEFLGDAILNFVIGEALFHHFP 60
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
L+R R ++ G +G +R+ + +++ A A+
Sbjct: 61 QAREGQLSRLRARLVKGETLALLARGFEVG--DYLRLGSGELKSGGFRRESILADAMEAL 118
Query: 153 FGAIAVDTG 161
GAI +DTG
Sbjct: 119 IGAIYLDTG 127
>gi|77165916|ref|YP_344441.1| ribonuclease III [Nitrosococcus oceani ATCC 19707]
gi|254434280|ref|ZP_05047788.1| ribonuclease III [Nitrosococcus oceani AFC27]
gi|90101630|sp|Q3J8D5.1|RNC_NITOC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|76884230|gb|ABA58911.1| RNAse III [Nitrosococcus oceani ATCC 19707]
gi|207090613|gb|EDZ67884.1| ribonuclease III [Nitrosococcus oceani AFC27]
Length = 233
Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE L +++GY F LLR A+TH S ++ENN L LG +++ ++ L +
Sbjct: 4 GLERLCRKLGYRFAEPALLRHAITHRSATKENNERLEFLGDSILNFLIADFLYSGFPRAQ 63
Query: 101 PKDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+R V + E++ + D + LGL ++ + S ++ AF A+
Sbjct: 64 EGELSRLRATLVKGETLAELARELEIGDHLILGLGELKSGGYRRTS----ILADAFEAVI 119
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 120 GAVYLDGG 127
>gi|398874304|ref|ZP_10629515.1| ribonuclease III [Pseudomonas sp. GM74]
gi|398195373|gb|EJM82420.1| ribonuclease III [Pseudomonas sp. GM74]
Length = 229
Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPL 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLAVLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|365839119|ref|ZP_09380367.1| ribonuclease III [Anaeroglobus geminatus F0357]
gi|364565515|gb|EHM43236.1| ribonuclease III [Anaeroglobus geminatus F0357]
Length = 238
Score = 42.7 bits (99), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 53 FKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLNKDIDISPKDLN 105
F + LL +A+THSS++ E+ N L LG V+D V L + D+ +L
Sbjct: 21 FHNWHLLDQALTHSSYTNEDRTHHSIHNERLEFLGDAVLDMVVGEYLFRRYPDMPEGNLT 80
Query: 106 R-RVSETSNVEISCAVDGMHLG----LQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVD 159
+ R S S ++C H+G L K ++ T +++ AF A+ GA+ +D
Sbjct: 81 KARASVVSEEPLACVCASFHMGSFLLLGKGEALT--GGRTRNSIMADAFEAVVGAVYID 137
>gi|387771311|ref|ZP_10127477.1| ribonuclease III [Pasteurella bettyae CCUG 2042]
gi|386902516|gb|EIJ67356.1| ribonuclease III [Pasteurella bettyae CCUG 2042]
Length = 224
Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 40/65 (61%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ+ I Y FK + LL++A+TH S + ++N L LG +++ +++ L ++ +
Sbjct: 4 LDRLQRHINYQFKDVALLKQALTHRSAATKHNERLEFLGDAILNYTIADALYHQFPHCNE 63
Query: 102 KDLNR 106
+L+R
Sbjct: 64 GELSR 68
>gi|383785170|ref|YP_005469740.1| ribonuclease III [Leptospirillum ferrooxidans C2-3]
gi|383084083|dbj|BAM07610.1| ribonuclease III [Leptospirillum ferrooxidans C2-3]
Length = 241
Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALGILGGYVIDTSVSLRLL 93
+L L+ + Y F I LL+ A+TH S+ + NN L LG V+ ++ L+
Sbjct: 10 SLNELESALNYRFGKIDLLQDALTHKSYMADPRQGRQSNNERLEFLGDTVLGLVIAEHLM 69
Query: 94 NKDIDISPKDLN----RRVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGA 148
+ D L+ R VSE S EIS +D G +L + K ++ + +++ A
Sbjct: 70 STHPDYPEGTLSKFKGRIVSEPSLAEISRTLDIGSYLRVGKGEELTQGREKS--SILADA 127
Query: 149 FRAIFGAIAVDTGKCDDAGDVFLRVH 174
A+ AI +D G A F+ H
Sbjct: 128 LEAVIAAIYLDGGLA--AARAFILTH 151
>gi|114765524|ref|ZP_01444632.1| Ribonuclease III [Pelagibaca bermudensis HTCC2601]
gi|114542117|gb|EAU45149.1| Ribonuclease III [Roseovarius sp. HTCC2601]
Length = 227
Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFS---EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
L++++G+ F LLRRA+THSS S E+N+ L LG V+ ++ LL D + S
Sbjct: 9 ALEERLGHRFDRPELLRRALTHSSMSAPGREDNQRLEFLGDRVLGLVMAEALLADDRNAS 68
Query: 101 PKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGA 155
L R V + + +++ VD G L L + +S A++ A A+ A
Sbjct: 69 EGQLAPRYNALVRKETCADVAREVDLGAALKLGRSEMMSGGRRKM--ALLGDAMEAVIAA 126
Query: 156 IAVDTG 161
+ +D G
Sbjct: 127 VYLDAG 132
>gi|345870601|ref|ZP_08822552.1| Ribonuclease 3 [Thiorhodococcus drewsii AZ1]
gi|343921414|gb|EGV32130.1| Ribonuclease 3 [Thiorhodococcus drewsii AZ1]
Length = 225
Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 16/143 (11%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILG----GYVIDTSVSLRLLNKDIDIS 100
L + +G+ F+ GLL +A+TH S NN L LG G+VI ++ LR D
Sbjct: 8 LAQALGHFFEQGGLLEQALTHRSVGPTNNERLEFLGDALIGFVIAETLCLRFPQAD---- 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGA 155
L+R R S ++ G+ LG +R+ T +++ A A+FGA
Sbjct: 64 EGTLSRLRASLVKRESLAKLARGLKLG--DYLRLGAGELRTGGHARDSILADALEAVFGA 121
Query: 156 IAVDTGKCDDAGDVFLRVHSGEV 178
+ +D G D A V L + +G +
Sbjct: 122 VYLDGG-FDAARKVVLNLFAGRL 143
>gi|46143661|ref|ZP_00134800.2| COG0571: dsRNA-specific ribonuclease [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 226
Score = 42.7 bits (99), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++ Y F ++ L +A+TH S +NN L LG +++ ++ L K +
Sbjct: 6 LERLQKKLSYQFTNLDYLLQALTHRSAGAKNNERLEFLGDSILNFAIGKALFEKFPKANE 65
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A+ GL + +++ + +++ AI AI
Sbjct: 66 GELS-RMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIY 124
Query: 158 VDTG 161
+D G
Sbjct: 125 LDAG 128
>gi|421712978|ref|ZP_16152309.1| ribonuclease III [Helicobacter pylori R32b]
gi|407216344|gb|EKE86181.1| ribonuclease III [Helicobacter pylori R32b]
Length = 239
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 11/136 (8%)
Query: 35 SSPFAT---ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYITPNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVV 145
L +K L++ R S S + + LQ +RVS P+++
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSTHGFTKLAKA--IALQDYLRVSSSEEISNGREKPSIL 125
Query: 146 CGAFRAIFGAIAVDTG 161
AF A+ + ++ G
Sbjct: 126 SSAFEALMAGVYLEAG 141
>gi|342904120|ref|ZP_08725922.1| Ribonuclease 3 [Haemophilus haemolyticus M21621]
gi|342904579|ref|ZP_08726378.1| Ribonuclease 3 [Haemophilus haemolyticus M21621]
gi|341953000|gb|EGT79514.1| Ribonuclease 3 [Haemophilus haemolyticus M21621]
gi|341954129|gb|EGT80623.1| Ribonuclease 3 [Haemophilus haemolyticus M21621]
Length = 227
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ L+++IGY F I LL++A+TH S + ++N L LG +++ +++ L ++ +
Sbjct: 4 LDRLERKIGYRFNDIALLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNE 63
Query: 102 KDLNRRVSETSNVEISCAV--------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+ R+ T E + A+ D M LG ++ + S + V AI
Sbjct: 64 GELS-RMRATLVREPTLAMLARQFELGDYMSLGSGELKSGGFRRESILADCV----EAII 118
Query: 154 GAIAVDTG 161
GA+++D G
Sbjct: 119 GAMSLDQG 126
>gi|404482777|ref|ZP_11018002.1| ribonuclease III [Clostridiales bacterium OBRC5-5]
gi|404343867|gb|EJZ70226.1| ribonuclease III [Clostridiales bacterium OBRC5-5]
Length = 232
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L LQ+ +GY +K+ LL +A+THSS++ E+ N L LG V++ VS
Sbjct: 5 LNELQELLGYEYKNKELLSQALTHSSYANEHQLGKNGSNERLEFLGDAVLEL-VSSEFFY 63
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
P+ ++ E + A ++ L K +++ T P+++ AF
Sbjct: 64 GVYPDKPEGELTKIRAGFVCEAALADCAKNIKLSKFLKLGKGEEHTGGRMRPSIISDAFE 123
Query: 151 AIFGAIAVDTGKCDDAGDVFLR 172
A+ G+I +D G +A +V L+
Sbjct: 124 ALIGSIYLDGGFA-NAKEVILK 144
>gi|418016286|ref|ZP_12655851.1| ribonuclease III [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|345506621|gb|EGX28915.1| ribonuclease III [Candidatus Arthromitus sp. SFB-mouse-NYU]
Length = 230
Score = 42.7 bits (99), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTSVSLRLLNKD 96
+E Q++IG F++I +L A+THSS++ E N L LG V+ ++ L
Sbjct: 9 IEKFQEKIGVKFRNIEILDLALTHSSYANERGLSEYNERLEFLGDSVLQLCITEYLYKNC 68
Query: 97 IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVVCGAFRAI 152
D + DL R+ + E S G L + +++S T + + A A+
Sbjct: 69 KDNNEGDLTRKRASIV-CEASLYKVGERWNLGEFIKLSKGEKLSGGKTRISTIADAVEAV 127
Query: 153 FGAIAVDTG 161
A+ +D+G
Sbjct: 128 IAAVYLDSG 136
>gi|190149854|ref|YP_001968379.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|189914985|gb|ACE61237.1| ribonuclease III [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
Length = 226
Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQK++ Y F ++ L +A+TH S +NN L LG +++ ++ L K +
Sbjct: 6 LERLQKKLSYQFTNLDYLLQALTHRSAGAKNNERLEFLGDSILNFAIGKALFEKFPKANE 65
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A+ GL + +++ + +++ AI AI
Sbjct: 66 GELS-RMRATLVREQTLAILARQFGLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIY 124
Query: 158 VDTG 161
+D G
Sbjct: 125 LDAG 128
>gi|398952416|ref|ZP_10674764.1| ribonuclease III [Pseudomonas sp. GM33]
gi|426407871|ref|YP_007027970.1| ribonuclease III [Pseudomonas sp. UW4]
gi|398155170|gb|EJM43624.1| ribonuclease III [Pseudomonas sp. GM33]
gi|426266088|gb|AFY18165.1| ribonuclease III [Pseudomonas sp. UW4]
Length = 229
Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L +
Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFERFPL 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG + +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLAVLARGFDLG--EYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|253827732|ref|ZP_04870617.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
gi|313141944|ref|ZP_07804137.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
gi|253511138|gb|EES89797.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
gi|313130975|gb|EFR48592.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
Length = 224
Score = 42.7 bits (99), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
L+ Q+ +GY F + LL+ A+TH S + +N L LG V+D + L K S
Sbjct: 3 LKDFQQYLGYHFSNQNLLQEALTHKSAKKSTHNERLEFLGDAVLDLIIG-EFLYKKFPHS 61
Query: 101 PK-DLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAI 156
P+ +L++ R S + + +++G + S + N+ +++ AF AI GAI
Sbjct: 62 PEGELSKMRASMVNEKAFAKIARYLNIGEYLYISHSEEQNNGREKDSILSNAFEAIVGAI 121
Query: 157 AVDTG 161
+++G
Sbjct: 122 YLESG 126
>gi|354584962|ref|ZP_09003853.1| ribonuclease III [Paenibacillus lactis 154]
gi|353191079|gb|EHB56588.1| ribonuclease III [Paenibacillus lactis 154]
Length = 233
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
L+ LQ ++ F++ LL++A TH+S+ E +N L LG V++ +VS L N
Sbjct: 6 LKQLQHKLHIQFRNAMLLKQAFTHASYVNEHRFSQNQDNERLEFLGDAVLELTVSEFLYN 65
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
D +L + V E S V+ + +D G ++ L K ++ T PA++ F
Sbjct: 66 LFPDRPEGELTKLRASIVCEPSLVQFALRLDFGRYVLLGKGEEMT--GGRTRPALLADVF 123
Query: 150 RAIFGAIAVDTG 161
+ GA+ +D G
Sbjct: 124 ESFVGALYLDQG 135
>gi|416893190|ref|ZP_11924476.1| ribonuclease III [Aggregatibacter aphrophilus ATCC 33389]
gi|347814218|gb|EGY30868.1| ribonuclease III [Aggregatibacter aphrophilus ATCC 33389]
Length = 226
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 40/65 (61%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ++I Y F+ GLL++A+TH S ++N L LG +++ +++ L ++ +
Sbjct: 6 LDRLQRKIDYQFQDTGLLKQALTHRSAGHKHNERLEFLGDAILNLTIAEALFHQFPKCNE 65
Query: 102 KDLNR 106
+L+R
Sbjct: 66 GELSR 70
>gi|312384317|gb|EFR29067.1| hypothetical protein AND_02261 [Anopheles darlingi]
Length = 1651
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 40/161 (24%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFS----EENNRALGILGGYVIDTSVSLRLLNKDID 98
E +++ +GY F++ L +A TH++++ ++ L LG V+D ++L + ++
Sbjct: 1402 EKIERTVGYKFRNRTFLLQAFTHATYTTNTLTKSYEQLEFLGDAVLDFLITLYIFERNPH 1461
Query: 99 ISPKDL-NRRVSETSNVEISCAVDGMHL-------------GLQKVVRVSPKTNS----- 139
+SP L + R + +NV ++C + L + K V V + +
Sbjct: 1462 MSPGQLTDLRSALVNNVTLACVLVRFRLHHYILSQSPMLTDKIDKFVEVQGQKRNRIGDW 1521
Query: 140 ----------------TVPAVVCGAFRAIFGAIAVDTGKCD 164
VP V+ F A+ GAI +D+G CD
Sbjct: 1522 VRLLTEESETPLAEYVDVPKVLGDVFEALIGAIYLDSG-CD 1561
>gi|390934856|ref|YP_006392361.1| ribonuclease 3 [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389570357|gb|AFK86762.1| Ribonuclease 3 [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 232
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNKD 96
E L+K IGYTF + LL+ A+THSS++ E +N L LG V+ +S L
Sbjct: 8 ENLEKNIGYTFNNKKLLKNALTHSSWANESKNFLSSNERLEFLGDSVLSIVISEYLYKNR 67
Query: 97 IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
D+ L++ +E E S A + + K + + T +++ A A+
Sbjct: 68 TDLEEGYLSKYRAEIV-CEPSLARCAREIEIGKYLNIGRGEEMTGGRNRDSILADAMEAL 126
Query: 153 FGAIAVDT 160
A+ +D+
Sbjct: 127 IAAVYLDS 134
>gi|342732311|ref|YP_004771150.1| ribonuclease III [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|384455714|ref|YP_005668309.1| ribonuclease III [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|342329766|dbj|BAK56408.1| ribonuclease III [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|346984057|dbj|BAK79733.1| ribonuclease III [Candidatus Arthromitus sp. SFB-mouse-Yit]
Length = 227
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTSVSLRLLNKD 96
+E Q++IG F++I +L A+THSS++ E N L LG V+ ++ L
Sbjct: 6 IEKFQEKIGVKFRNIEILDLALTHSSYANERGLSEYNERLEFLGDSVLQLCITEYLYKNC 65
Query: 97 IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVVCGAFRAI 152
D + DL R+ + E S G L + +++S T + + A A+
Sbjct: 66 KDNNEGDLTRKRASIV-CEASLYKVGERWNLGEFIKLSKGEKLSGGKTRISTIADAVEAV 124
Query: 153 FGAIAVDTG 161
A+ +D+G
Sbjct: 125 IAAVYLDSG 133
>gi|431931182|ref|YP_007244228.1| ribonuclease III [Thioflavicoccus mobilis 8321]
gi|431829485|gb|AGA90598.1| ribonuclease III [Thioflavicoccus mobilis 8321]
Length = 225
Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L + +G+ F+ L+ +A+TH S S NN L LG ++ ++ L + D S
Sbjct: 4 LRILARHLGHRFRDESLVIQALTHRSASSRNNERLEFLGDALLGVVIAEVLWQRFPDASE 63
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
DL+R + N E+ + L L + + P T +++ A AIF A+
Sbjct: 64 GDLSRLRASLVNKEMLARL-ARDLTLGDYLVLGPGEQRTGGHQRDSILADALEAIFAAVY 122
Query: 158 VDT 160
+D
Sbjct: 123 LDA 125
>gi|357465903|ref|XP_003603236.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
gi|355492284|gb|AES73487.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
Length = 1758
Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 7 TLYLLPVLVI--AISSSFQVRAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMT 64
+L+++ L I + S +A T +P + +L+ +IGY F GLL A T
Sbjct: 1284 SLHMMKWLGIDSGLEPSMVDKAITAASLHTYTPKVNEIASLEAKIGYEFSVKGLLVEATT 1343
Query: 65 HSSFSEENN----RALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVE 115
H S SE L LG V+D ++ L +I P +L S + N E
Sbjct: 1344 HLSESEHGTGCCYERLEFLGDSVLDLLITWHLFQSHTEIDPGELTDLRSASVNNE 1398
>gi|331084978|ref|ZP_08334065.1| ribonuclease III [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330408678|gb|EGG88143.1| ribonuclease III [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 229
Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L+ L+K+IGYTF+ LL++AM HSS++ E N L LG V++ + S L
Sbjct: 4 LKELEKKIGYTFQKKELLQKAMMHSSYTNEKHMKKQDCNERLEFLGDAVLELTTSEALFF 63
Query: 95 KDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRA 151
+ + +L + R S ++ + LG ++ + ++ A A
Sbjct: 64 DNPSMPEGELTKTRASIVCEPALAFVAKELMLGSYLLLGKGEEATGGRQRDSITSDAVEA 123
Query: 152 IFGAIAVDTG 161
+ GAI +D G
Sbjct: 124 LIGAIYLDGG 133
>gi|392545908|ref|ZP_10293045.1| RNase III, ds RNA [Pseudoalteromonas rubra ATCC 29570]
Length = 225
Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L K+IGY F LL +AMTH S ++N L LG ++ ++ L + DL
Sbjct: 8 LYKKIGYEFTDQSLLEQAMTHRSHKGQHNERLEFLGDSILSFVIANALYKQFPKAREGDL 67
Query: 105 NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDT 160
+R S + + A G+ GL +R+ P + + + A AI GA+ +D+
Sbjct: 68 SRMRSTLVRGQ-TLAEFGVEFGLGDYLRLGPGELKSGGYRRESTLADAVEAIIGAVFLDS 126
>gi|325108661|ref|YP_004269729.1| RNAse III [Planctomyces brasiliensis DSM 5305]
gi|324968929|gb|ADY59707.1| RNAse III [Planctomyces brasiliensis DSM 5305]
Length = 335
Score = 42.7 bits (99), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 65/125 (52%), Gaps = 13/125 (10%)
Query: 46 QKQIGYTFKSIGLLRRAMTHSSFSE---ENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
++ +GY F+ L +++TH+S ++ ++N + LG V+ V RL + P+
Sbjct: 19 EQALGYQFQDKNWLLKSLTHASIAQTRLQSNERMEFLGDAVLGAVVCDRLFA----LFPE 74
Query: 103 DLNRRVSETSNVEIS---CAVDGMHLGLQKVVRVSPKTNST--VP-AVVCGAFRAIFGAI 156
D ++++ + +S CA + LGL + V++ + + +P +V+ G F ++ AI
Sbjct: 75 DEEGQMTQMKSEVVSRTACAQLALALGLDRFVQMGKGLHQSREIPLSVLAGVFESVIAAI 134
Query: 157 AVDTG 161
+D G
Sbjct: 135 YLDGG 139
>gi|153816163|ref|ZP_01968831.1| hypothetical protein RUMTOR_02411 [Ruminococcus torques ATCC 27756]
gi|317500483|ref|ZP_07958707.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089416|ref|ZP_08338315.1| ribonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
gi|336438820|ref|ZP_08618442.1| ribonuclease III [Lachnospiraceae bacterium 1_1_57FAA]
gi|145846498|gb|EDK23416.1| ribonuclease III [Ruminococcus torques ATCC 27756]
gi|316898238|gb|EFV20285.1| ribonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
gi|330404784|gb|EGG84322.1| ribonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
gi|336017574|gb|EGN47333.1| ribonuclease III [Lachnospiraceae bacterium 1_1_57FAA]
Length = 228
Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L+ L+++IGY F++ L +AM HSS++ E+ N L LG V++ S L
Sbjct: 5 LKELEQKIGYRFRNFSFLEQAMMHSSYTNEHRMEKYRCNERLEFLGDAVLELISSEFLFR 64
Query: 95 KDIDISPKDLNR-RVSETSNVEIS-CAVD---GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
+ + +L + R S ++ CA D G +L L K V+ +V A
Sbjct: 65 QSPKVPEGELTKTRASMVCEQSLAMCARDIDLGSYLLLGKGEEVTG--GRFRDSVTSDAL 122
Query: 150 RAIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 123 EALIGAIYLDGG 134
>gi|152986476|ref|YP_001350091.1| ribonuclease III [Pseudomonas aeruginosa PA7]
gi|452876796|ref|ZP_21954132.1| ribonuclease III [Pseudomonas aeruginosa VRFPA01]
gi|189043330|sp|A6VAK6.1|RNC_PSEA7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|150961634|gb|ABR83659.1| ribonuclease III [Pseudomonas aeruginosa PA7]
gi|452186403|gb|EME13421.1| ribonuclease III [Pseudomonas aeruginosa VRFPA01]
Length = 229
Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
+ L+ L++++GYTFK L+ A+TH S++ NN L LG +++ + L +
Sbjct: 1 MSNPLDRLERKLGYTFKDQDLMVLALTHRSYAGRNNERLEFLGDAILNFVIGEALFHHFP 60
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
L+R R ++ G +G +R+ + +++ A A+
Sbjct: 61 QAREGQLSRLRARLVKGETLALLARGFEVG--DYLRLGSGELKSGGFRRESILADAMEAL 118
Query: 153 FGAIAVDTG 161
GAI +DTG
Sbjct: 119 IGAIYLDTG 127
>gi|444920292|ref|ZP_21240135.1| Ribonuclease 3 [Wohlfahrtiimonas chitiniclastica SH04]
gi|444508611|gb|ELV08780.1| Ribonuclease 3 [Wohlfahrtiimonas chitiniclastica SH04]
Length = 224
Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 4/140 (2%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
++ LQ+++GY F +I LL++A+ H S S +N L LG ++ +++ L + D
Sbjct: 2 IDRLQEKLGYQFTNIALLKQALVHRSVSRVHNERLEFLGDGCLNFTIAHALYERFPDAKE 61
Query: 102 KDL-NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIAV 158
+L N R + + L V+ + N + +++ AI A+ +
Sbjct: 62 GELSNIRAHLVKEETLHTIAKSLDLQKHLVISYGERKNDGAKRASILADTVEAIIAAVFL 121
Query: 159 DTGKCDDAGDVFLRVHSGEV 178
D+ + A + LR++ E+
Sbjct: 122 DSN-FESAKAMILRLYEAEL 140
>gi|385810564|ref|YP_005846960.1| dsRNA-specific ribonuclease [Ignavibacterium album JCM 16511]
gi|383802612|gb|AFH49692.1| dsRNA-specific ribonuclease [Ignavibacterium album JCM 16511]
Length = 258
Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 72/163 (44%), Gaps = 31/163 (19%)
Query: 30 QRFKTSSPFATALE--TLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGG 81
Q+ K+S TA + L+K IGY K +A+ H SF EE +N L LG
Sbjct: 18 QKNKSSKRLLTAQQFSDLEKIIGYPIKDQSHYIQALIHRSFLEELDEDDASNERLEFLGD 77
Query: 82 YVID--TSVSLRLLNKDID------ISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRV 133
V+ T+ L L D D + K +NR S A +GL K + +
Sbjct: 78 AVLSLITAEYLFHLYPDKDEGFLTKVRAKIVNRN---------SLADSAEEIGLVKFLLI 128
Query: 134 SPKTNST----VPAVVCGAFRAIFGAIAVDTGKCDDAGDVFLR 172
+ ++T V+ AF A+ GA+ +D G DAG VF+R
Sbjct: 129 NQNLSNTFSRGAKTVLSDAFEALVGALYLDQGL--DAGRVFIR 169
>gi|260892849|ref|YP_003238946.1| ribonuclease III [Ammonifex degensii KC4]
gi|260864990|gb|ACX52096.1| ribonuclease III [Ammonifex degensii KC4]
Length = 235
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSE-----ENNRALGILGGYVIDTSVSLRLLNK 95
L L+ ++G ++K LLR A+TH S++ E+N+ L LG V+ VS L
Sbjct: 2 GLAKLKDKLGISWKEEKLLRLALTHPSYAYEHPGVEHNQRLEFLGDSVLSLVVSDYLYRT 61
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVCGAFRA 151
+ S +L R+ E S A LG+ + + R K+ P+++ AF A
Sbjct: 62 FPEKSEGELT-RLRAAVVCEASLARVAEELGIGEALLLGRGEEKSGGRKRPSLLADAFEA 120
Query: 152 IFGAIAVDTG 161
+ GAI +D G
Sbjct: 121 LLGAIYLDQG 130
>gi|251791907|ref|YP_003006627.1| ribonuclease III [Aggregatibacter aphrophilus NJ8700]
gi|422336932|ref|ZP_16417904.1| ribonuclease 3 [Aggregatibacter aphrophilus F0387]
gi|247533294|gb|ACS96540.1| ribonuclease III [Aggregatibacter aphrophilus NJ8700]
gi|353345942|gb|EHB90231.1| ribonuclease 3 [Aggregatibacter aphrophilus F0387]
Length = 226
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 40/65 (61%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ++I Y F+ GLL++A+TH S ++N L LG +++ +++ L ++ +
Sbjct: 6 LDRLQRKIDYQFQDTGLLKQALTHRSAGHKHNERLEFLGDAILNLTIAEALFHQFPKCNE 65
Query: 102 KDLNR 106
+L+R
Sbjct: 66 GELSR 70
>gi|224141703|ref|XP_002324204.1| dicer-like protein [Populus trichocarpa]
gi|222865638|gb|EEF02769.1| dicer-like protein [Populus trichocarpa]
Length = 1492
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 37 PFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN----NRALGILGGYVIDTSVSLRL 92
P +++L+ ++GYTF +L+ AMTH+S E+ + L LG V+D ++ L
Sbjct: 1117 PKEDEIKSLESKLGYTFGVKFVLQEAMTHASIQEQGVTYCYQRLEFLGDSVLDLLITWHL 1176
Query: 93 LNKDIDISPKDLNRRVSETSN 113
D+ P +L S + N
Sbjct: 1177 YQSHTDVDPGELTDLRSASVN 1197
>gi|319774962|ref|YP_004137450.1| ribonuclease III [Haemophilus influenzae F3047]
gi|329123136|ref|ZP_08251706.1| ribonuclease III [Haemophilus aegyptius ATCC 11116]
gi|317449553|emb|CBY85758.1| Ribonuclease III [Haemophilus influenzae F3047]
gi|327471691|gb|EGF17133.1| ribonuclease III [Haemophilus aegyptius ATCC 11116]
Length = 227
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ L+++IGY F I LL++A+TH S + ++N L LG +++ +++ L ++ +
Sbjct: 4 LDRLERKIGYCFNDIVLLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNE 63
Query: 102 KDLNRRVSETSNVEISCAV--------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+ R+ T E + A+ D M LG ++ + S + V AI
Sbjct: 64 GELS-RMRATLVRESTLAILARQFELGDYMSLGSGELKNGGFRRESILADCV----EAII 118
Query: 154 GAIAVDTG 161
GA+++D G
Sbjct: 119 GAMSLDQG 126
>gi|319896432|ref|YP_004134625.1| ribonuclease iii [Haemophilus influenzae F3031]
gi|317431934|emb|CBY80282.1| Ribonuclease III [Haemophilus influenzae F3031]
Length = 227
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ L+++IGY F I LL++A+TH S + ++N L LG +++ +++ L ++ +
Sbjct: 4 LDRLERKIGYCFNDIVLLKQALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNE 63
Query: 102 KDLNRRVSETSNVEISCAV--------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+ R+ T E + A+ D M LG ++ + S + V AI
Sbjct: 64 GELS-RMRATLVRESTLAILARQFELGDYMSLGSGELKNGGFRRESILADCV----EAII 118
Query: 154 GAIAVDTG 161
GA+++D G
Sbjct: 119 GAMSLDQG 126
>gi|90101637|sp|Q3IDL2.2|RNC_PSEHT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
Length = 225
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L K I Y F GLL +AMTH S ++N L LG ++ ++ L K DL
Sbjct: 8 LYKTIDYIFADQGLLEQAMTHRSHKGQHNERLEFLGDSILSFVIANALYAKFPKAREGDL 67
Query: 105 NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDT 160
+R S + + A G+ GL +R+ P + + + A AI GA+ +D+
Sbjct: 68 SRMRSTLVRGQ-TLAEFGLEFGLGDYLRLGPGELKSGGFRRESTLADAVEAIIGAVFLDS 126
>gi|420415037|ref|ZP_14914153.1| ribonuclease III [Helicobacter pylori NQ4053]
gi|393034004|gb|EJB35065.1| ribonuclease III [Helicobacter pylori NQ4053]
Length = 239
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 35 SSPFAT---ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYITPNSSYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|312793340|ref|YP_004026263.1| ribonuclease iii [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180480|gb|ADQ40650.1| ribonuclease III [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 222
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA---LGILGGYVIDTSVSLRLLNKDID 98
+E +++ +GYTFK LLR A+TH S + N LG ++ +VS L +
Sbjct: 1 MEEIERALGYTFKDKNLLRLALTHKSATHSNKNCYERFEFLGDAALELAVSKYLFVHFPE 60
Query: 99 ISPKDL-NRRVSETSNVEISCAVDGMHLGLQKVV--RVSPKTNSTVPAVVCGAFRAIFGA 155
+S +L N R + + +S + ++L + R + +++ AIFGA
Sbjct: 61 LSEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGKREKMEKFHENKSILADVLEAIFGA 120
Query: 156 IAVDTG 161
I +++G
Sbjct: 121 IFIESG 126
>gi|88703551|ref|ZP_01101267.1| ribonuclease III [Congregibacter litoralis KT71]
gi|88702265|gb|EAQ99368.1| ribonuclease III [Congregibacter litoralis KT71]
Length = 224
Score = 42.4 bits (98), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
A + L++Q G + LL +A++H S NN L LG V+ VS L + D
Sbjct: 3 AQQWLERQFGCRLNNDALLHQALSHRSVGSRNNERLEFLGDSVLGYVVSEELYRRFPDAD 62
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLG--LQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
L+R RVS ++ + LG L+ V +++ +F AI GAI
Sbjct: 63 EGQLSRLRVSLVKGSALAEVAREITLGEQLRLGVGERHGGGRRRNSILADSFEAILGAIV 122
Query: 158 VDTG 161
+D G
Sbjct: 123 LDLG 126
>gi|381401154|ref|ZP_09926069.1| ribonuclease III [Kingella kingae PYKK081]
gi|380833843|gb|EIC13696.1| ribonuclease III [Kingella kingae PYKK081]
Length = 241
Score = 42.4 bits (98), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 29 DQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSV 88
+Q+FK+S LQ ++GYTFK L++A+TH S +N L +G ++D +
Sbjct: 6 NQQFKSS---------LQTKLGYTFKQPAWLQQALTHRSAHSQNYERLEFVGDAILDYVI 56
Query: 89 SLRLLNKDIDISPKDLNRRVSETSNV-EISCAVDGMHLGLQKVVRVS----PKTNSTVPA 143
+L L ++ L+ V T V E + A LGL K + + +
Sbjct: 57 TLMLFEAFPNLPEGRLS--VLRTHLVKEATLAEVARELGLGKALILGVGELKSGGYDRAS 114
Query: 144 VVCGAFRAIFGAIAVD 159
++ A AIF AI D
Sbjct: 115 ILADALEAIFAAIRFD 130
>gi|319760660|ref|YP_004124598.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF]
gi|318039374|gb|ADV33924.1| ribonuclease III [Candidatus Blochmannia vafer str. BVAF]
Length = 231
Score = 42.4 bits (98), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQ ++GY F + LL A+TH SFS ++N L LG +++ V+ L ++ IS D+
Sbjct: 9 LQGKLGYFFCKLDLLELALTHRSFSNQHNERLEFLGDAILNYVVANLLYHRYNCISEGDM 68
Query: 105 NR 106
+R
Sbjct: 69 SR 70
>gi|73662845|ref|YP_301626.1| ribonuclease III [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
gi|90101648|sp|Q49X17.1|RNC_STAS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|72495360|dbj|BAE18681.1| dsRNA-specific ribonuclease RNase III [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 244
Score = 42.4 bits (98), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 28 NDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILG 80
N ++ + F E +++ F + L ++A +HSSF + +N L LG
Sbjct: 3 NQKKKEMVQTFQNKFEKKMQELNLDFNRVDLYQQAFSHSSFINDFNMNRLDHNERLEFLG 62
Query: 81 GYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKT 137
V++ +VS L +K ++ +L + + T E S + + L ++ + KT
Sbjct: 63 DAVLELTVSRYLFDKYPELPEGNLTK-MRATIVCEPSLVIFANKIQLNDLILLGKGEEKT 121
Query: 138 NS-TVPAVVCGAFRAIFGAIAVDTG 161
T P++V AF A GA+ +D G
Sbjct: 122 GGRTRPSLVSDAFEAFVGALYLDQG 146
>gi|378405592|gb|AFB82635.1| dicer-2 [Marsupenaeus japonicus]
Length = 1502
Score = 42.4 bits (98), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA------LGILGGYVIDTSVSLRLLNK 95
L+ L+K+IGYTF+ + +A+THSS+ NN+ L LG V+D V+ + +
Sbjct: 1239 LDRLEKKIGYTFRDRSFIVQAVTHSSYV--NNQVTDCYQRLEFLGDAVLDYLVTCHIFCR 1296
Query: 96 DIDISP---KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTV 141
D SP DL + + + A +H Q ++ ++PK +++
Sbjct: 1297 FTDYSPGQLSDLRSYFVKNDTLGRAAAKGKLH---QHLLHINPKLEASI 1342
>gi|189219126|ref|YP_001939767.1| Ribonuclease III [Methylacidiphilum infernorum V4]
gi|189185984|gb|ACD83169.1| Ribonuclease III [Methylacidiphilum infernorum V4]
Length = 247
Score = 42.4 bits (98), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA-------LGILGGYVIDTSVSLRLLN 94
LE L+K++GY FK+ LL A+TH SF E+ R L LG V+ +V+ +L
Sbjct: 3 LEELEKKMGYAFKNPQLLEEALTHPSFFVESIRVNKGDFQRLEFLGDAVLGLAVTEKLFQ 62
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRV----SPKTNSTVPAVVCGAFR 150
L + + + + C++ + L + K +R+ T P+ + A
Sbjct: 63 LFPSFDEGKLTKLRARLVSRKNLCSLASL-LEIGKYLRLGKGEEKNQGRTKPSNLANALE 121
Query: 151 AIFGAIAVDTG 161
++ GA+ +D G
Sbjct: 122 SVIGALYLDGG 132
>gi|418293050|ref|ZP_12904973.1| ribonuclease III [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|379064456|gb|EHY77199.1| ribonuclease III [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 229
Score = 42.4 bits (98), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
+T+L L++++GY FK L+ A+TH SF+ NN L LG +++ L N
Sbjct: 1 MSTSLARLERRLGYQFKDQELMLLALTHRSFAGRNNERLEFLGDAILNFVAGEALFNHFP 60
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
L+R R ++ G LG + +R+ + +++ A+
Sbjct: 61 QAREGQLSRLRARLVKGETLAVLARGFELG--EYLRLGSGELKSGGFRRESILADTLEAL 118
Query: 153 FGAIAVDTG 161
GAI +D G
Sbjct: 119 IGAIYLDAG 127
>gi|109947401|ref|YP_664629.1| ribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|122973320|sp|Q17XJ6.1|RNC_HELAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|109714622|emb|CAJ99630.1| ribonuclease III (RNase III) [Helicobacter acinonychis str. Sheeba]
Length = 234
Score = 42.4 bits (98), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
TL+K +GY+FK LL +A+TH S NN L LG V+ + L +K
Sbjct: 15 TLEKALGYSFKDKHLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEG 74
Query: 103 DLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFG 154
L++ VS +++ A+ LQ +RVS ++ P+++ AF A+
Sbjct: 75 KLSKLRASIVSAQGFTKLARAI-----SLQDYLRVSSSEETSKGREKPSILSSAFEALMA 129
Query: 155 AIAVDTG 161
+ ++ G
Sbjct: 130 GVYLEAG 136
>gi|330811510|ref|YP_004355972.1| ribonuclease III [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|378952613|ref|YP_005210101.1| ribonuclease III [Pseudomonas fluorescens F113]
gi|423699066|ref|ZP_17673556.1| ribonuclease III [Pseudomonas fluorescens Q8r1-96]
gi|327379618|gb|AEA70968.1| Ribonuclease III [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|359762627|gb|AEV64706.1| Ribonuclease III [Pseudomonas fluorescens F113]
gi|387996695|gb|EIK58025.1| ribonuclease III [Pseudomonas fluorescens Q8r1-96]
Length = 229
Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVID 85
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++
Sbjct: 1 MSVSLSRLERQLGYTFKDQDLMLLALTHRSFAGRNNERLEFLGDAILN 48
>gi|254360744|ref|ZP_04976892.1| ribonuclease III [Mannheimia haemolytica PHL213]
gi|452744321|ref|ZP_21944167.1| ribonuclease III [Mannheimia haemolytica serotype 6 str. H23]
gi|153091314|gb|EDN73288.1| ribonuclease III [Mannheimia haemolytica PHL213]
gi|452087566|gb|EME03943.1| ribonuclease III [Mannheimia haemolytica serotype 6 str. H23]
Length = 224
Score = 42.4 bits (98), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNK 95
LE LQK++GY F ++ L +A+TH S + +NN L LG +++ ++ L +K
Sbjct: 3 LERLQKKLGYQFHNLDYLIQALTHRSAATKNNERLEFLGDSILNFTIGKVLYDK 56
>gi|77457221|ref|YP_346726.1| ribonuclease III [Pseudomonas fluorescens Pf0-1]
gi|90101638|sp|Q3KHL9.1|RNC_PSEPF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|77381224|gb|ABA72737.1| ribonuclease III [Pseudomonas fluorescens Pf0-1]
Length = 229
Score = 42.4 bits (98), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++ L ++
Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILNFVAGEALFDRFPL 61
Query: 99 ISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIF 153
L+R R ++ G LG +R+ + +++ A A+
Sbjct: 62 AREGQLSRLRARLVKGETLAVLARGFDLG--DYLRLGSGELKSGGFRRESILADALEALI 119
Query: 154 GAIAVDTG 161
GAI +D G
Sbjct: 120 GAIYLDAG 127
>gi|261492470|ref|ZP_05989024.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261496943|ref|ZP_05993311.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261307467|gb|EEY08802.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261311833|gb|EEY12982.1| ribonuclease III [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 224
Score = 42.4 bits (98), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNK 95
LE LQK++GY F ++ L +A+TH S + +NN L LG +++ ++ L +K
Sbjct: 3 LERLQKKLGYQFHNLDYLIQALTHRSAATKNNERLEFLGDSILNFTIGKVLYDK 56
>gi|307069613|ref|YP_003878090.1| ribonuclease III [Candidatus Zinderia insecticola CARI]
gi|306482873|gb|ADM89744.1| ribonuclease III [Candidatus Zinderia insecticola CARI]
Length = 221
Score = 42.4 bits (98), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L+K + Y F + LL A+THSS+S NN L LG +++T ++ L NK + S L
Sbjct: 4 LEKILRYNFNNKSLLFLALTHSSYSNINNEKLEFLGDSILNTCITSILFNKFKNESEGFL 63
Query: 105 NR------RVSETSNVEISCAV-DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
++ R + N+ + + + LG ++ + + +++ A+FGAI
Sbjct: 64 SKFRSYLVRREKLYNISKKINLYNFLFLGNSEI----KNSGNLKISILSSTLEALFGAIY 119
Query: 158 VDT 160
+D+
Sbjct: 120 IDS 122
>gi|320155320|ref|YP_004187699.1| ribonuclease III [Vibrio vulnificus MO6-24/O]
gi|56749444|sp|Q7MHN8.2|RNC_VIBVY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|319930632|gb|ADV85496.1| ribonuclease III [Vibrio vulnificus MO6-24/O]
Length = 225
Score = 42.4 bits (98), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
+ +E L +Q+GY F+ LL A+TH S + ++N L LG ++ ++ L ++ +
Sbjct: 3 SPIEKLTRQLGYQFQDDELLNLALTHRSANSKHNERLEFLGDSILSFVIADELYHRFPKV 62
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGA 155
+ D++ R+ T + A G GL +++ P + +++ A AI GA
Sbjct: 63 NEGDMS-RMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVEAIIGA 121
Query: 156 IAVDT 160
+ +D+
Sbjct: 122 VYLDS 126
>gi|332284936|ref|YP_004416847.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7]
gi|330428889|gb|AEC20223.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7]
Length = 252
Score = 42.4 bits (98), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
TLQ + Y F LL +A+TH S S +N L LG V++ V+ L + I D
Sbjct: 6 TLQAALDYQFGDASLLEQALTHRSHSGPHNERLEFLGDSVLNFVVASLLFVRFPKIDEGD 65
Query: 104 LNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVD 159
L+R + + G L L + +R+ + P+++ A A+F A+ +D
Sbjct: 66 LSRLRANLVKQAALADIAG-RLNLSQYLRLGEGELKSGGFRRPSILADALEALFAAVYLD 124
Query: 160 TGKCDDAGDVFLRVHS 175
G D A V R +
Sbjct: 125 GG-FDAAQQVIQRQYE 139
>gi|429205352|ref|ZP_19196629.1| ribonuclease III [Lactobacillus saerimneri 30a]
gi|428146424|gb|EKW98663.1| ribonuclease III [Lactobacillus saerimneri 30a]
Length = 230
Score = 42.4 bits (98), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 20/135 (14%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA-------LGILGGYVIDTSVSLRLLNK 95
+ L G F + LL A TH+S++ E+ R + LG V+ VS L +
Sbjct: 7 QMLHDDFGIDFHNPDLLDEAFTHASYANEHKREHLKYYERIEFLGDAVMQLCVSEYLFKR 66
Query: 96 DIDISPKDLNR------RVSETSNVEISCAVDG-MHLGLQKVVRVSPKTNS-TVPAVVCG 147
+ L+R R S + C D + LG + K+N+ PA++C
Sbjct: 67 YPLMPEGKLSRLRAAMVREESFSKFAVECHFDEYIRLG-----KGEEKSNARQRPALLCD 121
Query: 148 AFRAIFGAIAVDTGK 162
F A GA+ +D GK
Sbjct: 122 IFEAFIGALYLDQGK 136
>gi|27364934|ref|NP_760462.1| ribonuclease III [Vibrio vulnificus CMCP6]
gi|31076872|sp|Q8DC76.1|RNC_VIBVU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|27361080|gb|AAO09989.1| ribonuclease III [Vibrio vulnificus CMCP6]
Length = 225
Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
+ +E L +Q+GY F+ LL A+TH S + ++N L LG ++ ++ L ++ +
Sbjct: 3 SPIEKLTRQLGYQFQDDELLNLALTHRSANSKHNERLEFLGDSILSFVIADELYHRFPKV 62
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGA 155
+ D++ R+ T + A G GL +++ P + +++ A AI GA
Sbjct: 63 NEGDMS-RMRATLVRGNTLAELGREFGLGDYLKLGPGELKSGGFRRDSILADAVEAIIGA 121
Query: 156 IAVDT 160
+ +D+
Sbjct: 122 VYLDS 126
>gi|373857288|ref|ZP_09600030.1| ribonuclease III [Bacillus sp. 1NLA3E]
gi|372452938|gb|EHP26407.1| ribonuclease III [Bacillus sp. 1NLA3E]
Length = 260
Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 12/148 (8%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALG 77
+ N++ K + + Q ++G+ F+ LL++A THSS+ E+N L
Sbjct: 3 KNGNEREIKLNRAKEMQFKEFQSRLGFEFQDSNLLKQAFTHSSYVNEHRKKPYEDNERLE 62
Query: 78 ILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT 137
LG V++ +VS L K +S +L ++ E S L ++V +
Sbjct: 63 FLGDAVLELTVSQFLYKKYPLMSEGELT-KLRAAVVCEPSLVFFANELFFGQLVLLGKGE 121
Query: 138 NST----VPAVVCGAFRAIFGAIAVDTG 161
T PA++ F A GA+ +D G
Sbjct: 122 ELTGGRARPALLADVFEAFIGALYLDKG 149
>gi|420453494|ref|ZP_14952331.1| ribonuclease III [Helicobacter pylori Hp A-8]
gi|393069982|gb|EJB70775.1| ribonuclease III [Helicobacter pylori Hp A-8]
Length = 239
Score = 42.4 bits (98), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+AT TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYATPNNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDHLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|289547872|ref|YP_003472860.1| ribonuclease III [Thermocrinis albus DSM 14484]
gi|289181489|gb|ADC88733.1| ribonuclease III [Thermocrinis albus DSM 14484]
Length = 237
Score = 42.4 bits (98), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 70/143 (48%), Gaps = 10/143 (6%)
Query: 36 SPFATALETLQKQIGYTFKSIGLLRRAMTHSSFS--EENNRALGILGGYVIDTSVSLRLL 93
+ F+ + + ++K +GY+F+ LL A+TH S + + L LG +I+ V LL
Sbjct: 3 ASFSESSKVIEKVLGYSFRDPSLLEEALTHRSVAVGRRSYEVLEFLGDALINLFVVDLLL 62
Query: 94 NKDIDISPKDLNRRVSETSNVEIS---CAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFR 150
P+ +++ +S + LGL+ ++++ + + +++ F
Sbjct: 63 QN----FPQSREGQLAIMKAFFVSEDFLSQLSQELGLESLIKMERRRKNISSSILADVFE 118
Query: 151 AIFGAIAVDTGK-CDDAGDVFLR 172
A++GAI +DTG+ + D+F +
Sbjct: 119 ALWGAIYMDTGRDLNTTRDLFFK 141
>gi|419416411|ref|ZP_13956969.1| ribonuclease III [Helicobacter pylori P79]
gi|384375293|gb|EIE30596.1| ribonuclease III [Helicobacter pylori P79]
Length = 239
Score = 42.4 bits (98), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 35 SSPFAT---ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYITPNSSYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISNGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|15645286|ref|NP_207456.1| ribonuclease III [Helicobacter pylori 26695]
gi|2313785|gb|AAD07725.1| ribonuclease III (rnc) [Helicobacter pylori 26695]
Length = 240
Score = 42.4 bits (98), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 35 SSPFAT---ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 9 NSPYITPNSSYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 68
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 69 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISNGREKP 123
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 124 SILSSAFEALMAGVYLEAG 142
>gi|334341125|ref|YP_004546105.1| chemotaxis sensory transducer protein [Desulfotomaculum ruminis DSM
2154]
gi|334092479|gb|AEG60819.1| chemotaxis sensory transducer [Desulfotomaculum ruminis DSM 2154]
Length = 458
Score = 42.4 bits (98), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 25/155 (16%)
Query: 20 SSFQVRAANDQ---RFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRA 75
SS QV+AA+DQ + +S A E +Q G + LL + S + +E+NRA
Sbjct: 80 SSQQVQAASDQMAVSVQATSDIHGAFEHMQDLTGELQDTGDLLEKDFIESEEAVQESNRA 139
Query: 76 LGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSP 135
+G + G++ + + S LL + + K L V + +IS A+ G +S
Sbjct: 140 IGKVNGFISEITASHGLLREQV----KTLQEAVDQVQ--QISEAIGG----------ISE 183
Query: 136 KT-----NSTVPAVVCGAFRAIFGAIAVDTGKCDD 165
+T N+ + A G FG +A + GK D
Sbjct: 184 QTKLLALNAAIEAARAGEHGRGFGVVAEEIGKLSD 218
>gi|94676727|ref|YP_588731.1| ribonuclease III [Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)]
gi|94219877|gb|ABF14036.1| ribonuclease III [Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)]
Length = 225
Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L LQK+IGY F++ LL +A+TH S S ++N L LG ++ ++ L + I+
Sbjct: 5 LNNLQKKIGYYFQNQNLLLQALTHRSASNKHNERLEFLGDSILSYVIAHALYQRFQYINE 64
Query: 102 KDLNR 106
D++R
Sbjct: 65 GDMSR 69
>gi|420431419|ref|ZP_14930438.1| ribonuclease III [Helicobacter pylori Hp H-16]
gi|393049012|gb|EJB49978.1| ribonuclease III [Helicobacter pylori Hp H-16]
Length = 239
Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 35 SSPFAT---ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYITHNSSYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|410023898|ref|YP_006893151.1| ribonuclease III [Helicobacter pylori Rif1]
gi|410501665|ref|YP_006936192.1| ribonuclease III [Helicobacter pylori Rif2]
gi|410682185|ref|YP_006934587.1| ribonuclease III [Helicobacter pylori 26695]
gi|7531276|sp|P56118.2|RNC_HELPY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|409893826|gb|AFV41884.1| ribonuclease III [Helicobacter pylori 26695]
gi|409895555|gb|AFV43477.1| ribonuclease III [Helicobacter pylori Rif1]
gi|409897216|gb|AFV45070.1| ribonuclease III [Helicobacter pylori Rif2]
Length = 239
Score = 42.4 bits (98), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 35 SSPFAT---ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYITPNSSYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISNGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|384896042|ref|YP_005770031.1| ribonuclease III [Helicobacter pylori 35A]
gi|315586658|gb|ADU41039.1| ribonuclease III [Helicobacter pylori 35A]
Length = 238
Score = 42.4 bits (98), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 35 SSPFAT--ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLR 91
+SP+AT + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYATNSSYITLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGEL 67
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVVCG 147
L +K L++ + + + + + LQ +RVS P+++
Sbjct: 68 LYHKFYQYDEGKLSKLRASIVSAHGFTKLAKV-IALQDYLRVSSSEEISKGREKPSILSS 126
Query: 148 AFRAIFGAIAVDTG 161
AF A+ + ++ G
Sbjct: 127 AFEALMAGVYLEAG 140
>gi|419760458|ref|ZP_14286737.1| ribonuclease III [Thermosipho africanus H17ap60334]
gi|407514561|gb|EKF49376.1| ribonuclease III [Thermosipho africanus H17ap60334]
Length = 230
Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENN----RALGILGGYVIDTSVSLRLLNKDID 98
E L+ ++GY F++ LL A+TH+SF+ ENN L LG VID +S L + +
Sbjct: 7 EKLENKLGYRFRNEELLLTALTHTSFAHENNVKSYERLEFLGDAVIDLLLSTILYQEFTN 66
Query: 99 ISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFG 154
++ + + + ++ +I + G+ +G++ + + +++ A+
Sbjct: 67 LNEGTMAQIKAAVASEDILYEI-GIDIGIENYIFLGKGELKSGGKYKKSIIADVVEALVA 125
Query: 155 AIAVDTGK 162
AI VD+ K
Sbjct: 126 AIYVDSKK 133
>gi|333923291|ref|YP_004496871.1| ribonuclease 3 [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333748852|gb|AEF93959.1| Ribonuclease 3 [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 246
Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
L+ +IG+ + + LL +A+THSS E +N+ L LG V++ +S L +
Sbjct: 11 LKAKIGFEWSNPSLLTQALTHSSCVHESRGQGLHHNQRLEFLGDAVLELLISEYLYQRFP 70
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
D + +L + R + ++ G+ LG + +R+ + P+++ AF A+
Sbjct: 71 DRTEGELTKMRAASVCEPSLAKVARGLDLG--RCLRMGRGEERSGGRERPSILADAFEAL 128
Query: 153 FGAIAVDTG 161
GAI +D G
Sbjct: 129 LGAIYLDHG 137
>gi|421262773|ref|ZP_15713860.1| ribonuclease III [Pasteurella multocida subsp. multocida str.
P52VAC]
gi|401690458|gb|EJS85729.1| ribonuclease III [Pasteurella multocida subsp. multocida str.
P52VAC]
Length = 225
Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ+QIGY F LL++A+TH S + ++N L LG +++ ++ L ++ +
Sbjct: 5 LDRLQRQIGYQFNQPALLKQALTHRSAAVKHNERLEFLGDAILNFIIAEALYHQFPKCNE 64
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A L + + P + +++ AI GAI+
Sbjct: 65 GELS-RMRATLVREPTLATLARQFELGDYLSLGPGELKSGGFRRESILADCVEAIIGAIS 123
Query: 158 VDT 160
+D+
Sbjct: 124 LDS 126
>gi|420398911|ref|ZP_14898122.1| ribonuclease III [Helicobacter pylori CPY1962]
gi|393013140|gb|EJB14317.1| ribonuclease III [Helicobacter pylori CPY1962]
Length = 238
Score = 42.4 bits (98), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 35 SSPFAT--ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLR 91
+SP+AT + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYATNSSYITLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGEL 67
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVVCG 147
L +K L++ + + + + + LQ +RVS P+++
Sbjct: 68 LYHKFYQYDEGKLSKLRASIVSAHGFTKLAKV-IALQDYLRVSSSEEISNGREKPSILSS 126
Query: 148 AFRAIFGAIAVDTG 161
AF A+ + ++ G
Sbjct: 127 AFEALMAGVYLEAG 140
>gi|415886541|ref|ZP_11548321.1| ribonuclease III [Bacillus methanolicus MGA3]
gi|387587228|gb|EIJ79551.1| ribonuclease III [Bacillus methanolicus MGA3]
Length = 252
Score = 42.4 bits (98), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 12/149 (8%)
Query: 24 VRAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRAL 76
+R D + +T + Q++IG F+ LL++A THSS+ E+N L
Sbjct: 1 MRKNKDNQKRTLRAKDKQFKEFQERIGINFEDEKLLKQAFTHSSYVNEHRKKPYEDNERL 60
Query: 77 GILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPK 136
LG V++ +VS L K +S +L ++ E S L ++V +
Sbjct: 61 EFLGDAVLELTVSQFLFKKYPMMSEGELT-KLRAAVVCEPSLVSFANELSFGELVLLGKG 119
Query: 137 TNST----VPAVVCGAFRAIFGAIAVDTG 161
T PA++ F A GA+ +D G
Sbjct: 120 EEMTGGRERPALLADVFEAFIGALYLDKG 148
>gi|383762960|ref|YP_005441942.1| ribonuclease III [Caldilinea aerophila DSM 14535 = NBRC 104270]
gi|381383228|dbj|BAM00045.1| ribonuclease III [Caldilinea aerophila DSM 14535 = NBRC 104270]
Length = 254
Score = 42.4 bits (98), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 13/151 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE---------NNRALGILGGYVIDTSVSLRL 92
L TL++ +G TF + LL++A H S+ E +N L LG V+ S L
Sbjct: 6 LSTLEQALGITFHNKQLLQQAFVHRSYLNELSGDKGQLLDNERLEFLGDAVLSYIFSEFL 65
Query: 93 LNKDIDISPKDL-NRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAF 149
+ D L N R + ++ +HLG ++ + + PA +C F
Sbjct: 66 YLRHPDAREGRLTNLRSALVRRETLAHLARQLHLGDYLLLGHGEEESGGRHRPATLCATF 125
Query: 150 RAIFGAIAVDTGKCDDAGDVFLRVHSGEVGK 180
A+ GA+ +D G D +V +R+ + E+ K
Sbjct: 126 EALIGAVYLDQG-VDVCREVVVRLFAAELEK 155
>gi|410421196|ref|YP_006901645.1| ribonuclease III [Bordetella bronchiseptica MO149]
gi|408448491|emb|CCJ60174.1| ribonuclease III [Bordetella bronchiseptica MO149]
Length = 256
Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDID 98
A +L TL+ ++ + F LL +A+TH S +N L LG V++ V+ L +
Sbjct: 3 AMSLVTLETRLDHRFGDKALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYGK 62
Query: 99 ISPKDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
+ DL+R V + S +I+ +D L + +R+ + P+++
Sbjct: 63 LDEGDLSRLRANLVKQASLADIAQRLD-----LSQYLRLGEGELKSGGFRRPSILADTVE 117
Query: 151 AIFGAIAVDTG 161
A+FGA+ +D G
Sbjct: 118 ALFGAVFLDAG 128
>gi|407692463|ref|YP_006817252.1| ribonuclease III [Actinobacillus suis H91-0380]
gi|407388520|gb|AFU19013.1| ribonuclease III [Actinobacillus suis H91-0380]
Length = 222
Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
+E LQK++GY F S+ L +A+TH S +NN L LG +++ ++ L K +
Sbjct: 3 IERLQKKLGYKFISLDYLLQALTHRSAGAKNNERLEFLGDSILNFAIGKALFEKFPKANE 62
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+L+ R+ T E + A+ L + +++ + +++ AI AI
Sbjct: 63 GELS-RMRATLVREQTLAILARQFDLGEYMKLGAGELKSGGYRRESILSDCVEAIIAAIY 121
Query: 158 VDTG 161
+D+G
Sbjct: 122 LDSG 125
>gi|420419921|ref|ZP_14919008.1| ribonuclease III [Helicobacter pylori NQ4161]
gi|393037157|gb|EJB38193.1| ribonuclease III [Helicobacter pylori NQ4161]
Length = 239
Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T+ TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTSNNPYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +R+S P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRISSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|304316939|ref|YP_003852084.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|302778441|gb|ADL69000.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum DSM
571]
Length = 232
Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 16/152 (10%)
Query: 32 FKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVID 85
+TS + E L+K IGY F + LL+ A+ HSS++ E +N L LG V+
Sbjct: 1 METSEKY----ENLEKNIGYVFNNKKLLKNALAHSSWANESKNIGISNERLEFLGDSVLS 56
Query: 86 TSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----V 141
+S L D+ L++ SE E S A + L K + + T
Sbjct: 57 IIISEYLYKSRSDLEEGYLSKYRSEIV-CEPSLARCAREIELGKYLLMGKGEEMTGGRNR 115
Query: 142 PAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRV 173
+++ A A+ AI +D+ A D+ LR+
Sbjct: 116 ESILADAMEALIAAIYLDS-DLKTASDIVLRL 146
>gi|212212136|ref|YP_002303072.1| ribonuclease III [Coxiella burnetii CbuG_Q212]
gi|226741368|sp|B6IYZ9.1|RNC_COXB2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|212010546|gb|ACJ17927.1| ribonuclease III [Coxiella burnetii CbuG_Q212]
Length = 233
Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L +++G+ F ++ LL+ A+TH S +NN L LG V+ ++ L +
Sbjct: 4 LNKLMERLGHQFNNLELLKIALTHRSSGADNNERLEFLGDSVLGFIIASELYQRRPQARE 63
Query: 102 KDLNR-RVSETSNVEISCAVD--GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAV 158
DL+R R S + E++ G++ LQ V +++ A AI G+I +
Sbjct: 64 GDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGSIYI 123
Query: 159 DTG 161
D G
Sbjct: 124 DAG 126
>gi|383936592|ref|ZP_09990016.1| ribonuclease III [Rheinheimera nanhaiensis E407-8]
gi|383702374|dbj|GAB60107.1| ribonuclease III [Rheinheimera nanhaiensis E407-8]
Length = 224
Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L L ++GY F LL +A+TH S ++N L LG V+ ++ L +
Sbjct: 4 SLTPLMARLGYQFSDTSLLEQALTHRSCKGQHNERLEFLGDAVLSLVIAETLYSHFPKAR 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
DL R+ T ++ A L L + +R+ P + +++ A AI GAI
Sbjct: 64 EGDLT-RMRATLVKGVTLAEIAQELRLSEYLRLGPGELKSGGFRRESILADAVEAILGAI 122
Query: 157 AVDTG 161
+D+G
Sbjct: 123 YLDSG 127
>gi|320352215|ref|YP_004193554.1| RNAse III [Desulfobulbus propionicus DSM 2032]
gi|320120717|gb|ADW16263.1| RNAse III [Desulfobulbus propionicus DSM 2032]
Length = 243
Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLN 94
L LQ++IGY F+ + LL+ ++ HSSF+ E +N LG V+D +V L
Sbjct: 15 GLHELQERIGYRFRDLRLLQLSLIHSSFAFERLDDGRHNETQEFLGDAVLDLTVGYILFV 74
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
+ ++ L R S N E A + L K + + N++ +++ A+
Sbjct: 75 RFPEMREGKLTRIRSALVN-EQGLADRAREIDLGKYLLLGKGENASNGRDKSSILSCAYE 133
Query: 151 AIFGAIAVDTG 161
A+ GA+ +D G
Sbjct: 134 ALVGALFLDGG 144
>gi|433655086|ref|YP_007298794.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433293275|gb|AGB19097.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 232
Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 16/152 (10%)
Query: 32 FKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVID 85
+TS + E L+K IGY F + LL+ A+ HSS++ E +N L LG V+
Sbjct: 1 METSEKY----ENLEKNIGYVFNNKKLLKNALAHSSWANESKNIGISNERLEFLGDSVLS 56
Query: 86 TSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----V 141
+S L D+ L++ SE E S A + L K + + T
Sbjct: 57 IIISEYLYKSRSDLEEGYLSKYRSEIV-CEPSLARCAREIELGKYLLMGKGEEMTGGRNR 115
Query: 142 PAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRV 173
+++ A A+ AI +D+ A D+ LR+
Sbjct: 116 ESILADAMEALIAAIYLDS-DLKTASDIVLRL 146
>gi|423093747|ref|ZP_17081543.1| ribonuclease III [Pseudomonas fluorescens Q2-87]
gi|397886951|gb|EJL03434.1| ribonuclease III [Pseudomonas fluorescens Q2-87]
Length = 229
Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVID 85
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++
Sbjct: 1 MSVSLSRLERQLGYTFKDQELMLLALTHRSFAGRNNERLEFLGDAILN 48
>gi|317131320|ref|YP_004090634.1| ribonuclease III [Ethanoligenens harbinense YUAN-3]
gi|315469299|gb|ADU25903.1| ribonuclease III [Ethanoligenens harbinense YUAN-3]
Length = 226
Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
LE L+K +GYTF LL A+THSS++ E +N L LG V+ + L
Sbjct: 2 LEELEKNLGYTFADKSLLENALTHSSYANEMKKHSCGSNERLEFLGDAVLGIISAEYLYF 61
Query: 95 KDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAF 149
+ +L R R S + + LG + +R+ +T +++ AF
Sbjct: 62 HHTRVPEGELTRLRASMVCERSLQGFARTVELG--RWLRLGRGEENTGGRERSSILADAF 119
Query: 150 RAIFGAIAVDTG 161
A+ AI +D G
Sbjct: 120 EAVIAAIYIDGG 131
>gi|386760965|ref|YP_006234600.1| ribonuclease III [Helicobacter cinaedi PAGU611]
gi|385145981|dbj|BAM11489.1| ribonuclease III [Helicobacter cinaedi PAGU611]
Length = 242
Score = 42.4 bits (98), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDISP 101
+ L+K +GYTFK LL A+TH S NN L LG V+D V L K
Sbjct: 11 QALEKTLGYTFKDKKLLLEALTHKSCKNAYNNERLEFLGDAVLDLLVGEFLFRKFPSAKE 70
Query: 102 KDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGA 155
+L++ V+E ++++ ++D LG + S + N +++ AF A+ GA
Sbjct: 71 GELSKLRACIVNEKGFMKLAKSLD---LGAFLHISQSEEHNKGREKASILSNAFEALMGA 127
Query: 156 IAVDT 160
I +++
Sbjct: 128 IYLES 132
>gi|380026731|ref|XP_003697097.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Apis
florea]
Length = 1362
Score = 42.0 bits (97), Expect = 0.097, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 13/116 (11%)
Query: 37 PFATALETLQKQIGYTFKSIGLLRRAMTHSSFS----EENNRALGILGGYVIDTSVSLRL 92
P+A+ +ET ++GY FK+ G L +A TH S+S E + L LG ++D ++ +
Sbjct: 1157 PWASEIET---KLGYKFKNRGYLLQAFTHPSYSANHMTECYQRLEFLGDAILDFLITSYI 1213
Query: 93 LNKDIDISPKDL-NRRVSETSNVEISCAV--DGMHLGLQKVVRVSPKTNSTVPAVV 145
+++P L + R + +N+ +C G+H+ L + SPK N + V
Sbjct: 1214 YENCGNLNPGSLTDLRSALVNNITFACLTVRHGLHIAL---LCYSPKLNDIIERFV 1266
>gi|325677853|ref|ZP_08157495.1| ribonuclease III [Ruminococcus albus 8]
gi|324110407|gb|EGC04581.1| ribonuclease III [Ruminococcus albus 8]
Length = 232
Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN------NRALGILGGYVIDTSVSLRLLNK 95
L QK+IGY+FK+ LL A++HSSF+ EN N L LG V+ VS +
Sbjct: 7 LAEFQKRIGYSFKNDRLLYEALSHSSFANENKKQRHSNERLEFLGDSVLSIVVSDYIFEH 66
Query: 96 DIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFR 150
+ +L + V E + E S + G ++ L K ++ ++V A
Sbjct: 67 FKHLPEGELTKLRASLVCEKALFEFSHKFELGKYIFLGKGEELTGGRERA--SIVSDAME 124
Query: 151 AIFGAIAVDTG 161
A+ AI +D G
Sbjct: 125 AVIAAIYLDGG 135
>gi|384892695|ref|YP_005766788.1| ribonuclease III [Helicobacter pylori Cuz20]
gi|308061992|gb|ADO03880.1| ribonuclease III [Helicobacter pylori Cuz20]
Length = 239
Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+AT TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYATPNSPYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVVC 146
L +K L++ + + + + + LQ +RVS P+++
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKV-IALQDYLRVSSSEEISNGREKPSILS 126
Query: 147 GAFRAIFGAIAVDTG 161
AF A+ + ++ G
Sbjct: 127 SAFEALMAGVYLEAG 141
>gi|266623888|ref|ZP_06116823.1| ribonuclease III, partial [Clostridium hathewayi DSM 13479]
gi|288864294|gb|EFC96592.1| ribonuclease III [Clostridium hathewayi DSM 13479]
Length = 229
Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L L+ +IGY F LL +AMTHSS++ E+ N L LG V++ S L +
Sbjct: 5 LHELEGRIGYRFTDRQLLTQAMTHSSYANEHRLNKLECNERLEFLGDSVLEVVSSDFLYH 64
Query: 95 KDIDISPKDLNR-RVSETSNVEIS-CAVD---GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
K + DL + R S ++ CA D G +L L K + +VV A
Sbjct: 65 KYPERPEGDLTKIRASIVCEPTLAYCAEDIDLGAYLLLGKGEEATGGRGRA--SVVSDAM 122
Query: 150 RAIFGAIAVDTG 161
A+ GAI +D G
Sbjct: 123 EALIGAIYLDGG 134
>gi|108563072|ref|YP_627388.1| ribonuclease III [Helicobacter pylori HPAG1]
gi|107836845|gb|ABF84714.1| ribonuclease III [Helicobacter pylori HPAG1]
Length = 240
Score = 42.0 bits (97), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 9 NSPYVTPNNPYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 68
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 69 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISNGREKP 123
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 124 SILSSAFEALMAGVYLEAG 142
>gi|417844385|ref|ZP_12490429.1| Ribonuclease 3 [Haemophilus haemolyticus M21639]
gi|341956838|gb|EGT83254.1| Ribonuclease 3 [Haemophilus haemolyticus M21639]
Length = 227
Score = 42.0 bits (97), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ L+++IGY F I LL++A+TH S ++N L LG +++ +++ L ++ +
Sbjct: 4 LDRLERKIGYRFNDIALLKQALTHRSAVTQHNERLEFLGDSILNFTIAEALYHQFPRCNE 63
Query: 102 KDLNRRVSETSNVEISCAV--------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+ R+ T E + A+ D M LG ++ + S + V AI
Sbjct: 64 GELS-RMRATLVREPTLAILARQFELGDYMSLGSGELKSGGFRRESILADCV----EAII 118
Query: 154 GAIAVDTG 161
GA+++D G
Sbjct: 119 GAMSLDQG 126
>gi|422661760|ref|ZP_16723953.1| ribonuclease III, partial [Pseudomonas syringae pv. aptata str.
DSM 50252]
gi|330982830|gb|EGH80933.1| ribonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 49
Score = 42.0 bits (97), Expect = 0.100, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVID 85
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++
Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILN 48
>gi|386265616|ref|YP_005829108.1| RNase III, dsRNA [Haemophilus influenzae R2846]
gi|309972852|gb|ADO96053.1| RNase III, dsRNA [Haemophilus influenzae R2846]
Length = 227
Score = 42.0 bits (97), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ L+++IGY F I LL+ A+TH S + ++N L LG +++ +++ L ++ +
Sbjct: 4 LDRLERKIGYRFNDIALLKLALTHRSAATQHNERLEFLGDSILNFTIAEALYHQFPRCNE 63
Query: 102 KDLNRRVSETSNVEISCAV--------DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
+L+ R+ T E + A+ D M LG ++ + S + V AI
Sbjct: 64 GELS-RMRATLVREPTLAILARQFELGDYMSLGSGELKNGGFRRESILADCV----EAII 118
Query: 154 GAIAVDTG 161
GA+++D G
Sbjct: 119 GAMSLDQG 126
>gi|363892437|ref|ZP_09319605.1| ribonuclease III [Eubacteriaceae bacterium CM2]
gi|363893925|ref|ZP_09321018.1| ribonuclease III [Eubacteriaceae bacterium ACC19a]
gi|402839311|ref|ZP_10887803.1| ribonuclease III [Eubacteriaceae bacterium OBRC8]
gi|361963192|gb|EHL16275.1| ribonuclease III [Eubacteriaceae bacterium ACC19a]
gi|361964387|gb|EHL17431.1| ribonuclease III [Eubacteriaceae bacterium CM2]
gi|402270517|gb|EJU19778.1| ribonuclease III [Eubacteriaceae bacterium OBRC8]
Length = 233
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 32 FKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDT 86
K+ F + +E K IGY F++ GL++ A+THSS+ EN N L LG ++
Sbjct: 1 MKSDKAFFSGIE---KNIGYVFENKGLIKTALTHSSYVNENKNSRDNERLEFLGDSILSL 57
Query: 87 SVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTV 141
VS + N ++ +L + V E S + ++ + G ++ L K + S T
Sbjct: 58 VVSNYIFNYKSNLKEGELTKIRASCVCEKSLINVANKLKIGDYIRLGKGEQNSGGKKRT- 116
Query: 142 PAVVCGAFRAIFGAIAVDT 160
+++ A AI AI +D+
Sbjct: 117 -SILADATEAIIAAIYLDS 134
>gi|208434584|ref|YP_002266250.1| ribonuclease III [Helicobacter pylori G27]
gi|226741372|sp|B5Z735.1|RNC_HELPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|208432513|gb|ACI27384.1| ribonuclease III [Helicobacter pylori G27]
Length = 239
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRAAIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|420470518|ref|ZP_14969227.1| ribonuclease III [Helicobacter pylori Hp H-11]
gi|393085951|gb|EJB86630.1| ribonuclease III [Helicobacter pylori Hp H-11]
Length = 239
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|260425711|ref|ZP_05779691.1| ribonuclease III [Citreicella sp. SE45]
gi|260423651|gb|EEX16901.1| ribonuclease III [Citreicella sp. SE45]
Length = 227
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFS---EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
L++++G+ F LRRA+THSS S E+N+ L LG V+ ++ LL++D S
Sbjct: 9 ALEQRLGHRFADPERLRRALTHSSMSAPGREDNQRLEFLGDRVLGLVMAEALLSEDRGAS 68
Query: 101 PKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGA 155
L R V + + E++ +D G L L + +S A++ A A+ A
Sbjct: 69 EGQLAPRFNALVRKEACAEVAREIDLGAALKLGRSEMMSGGRRKM--ALLGDAMEAVIAA 126
Query: 156 IAVDTG 161
+ +D G
Sbjct: 127 VYLDAG 132
>gi|315499946|ref|YP_004088749.1| ribonuclease iii [Asticcacaulis excentricus CB 48]
gi|315417958|gb|ADU14598.1| ribonuclease III [Asticcacaulis excentricus CB 48]
Length = 242
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 19/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE--------ENNRALGILGGYVIDTSVSLRLL 93
L+ L+ ++GY F LL A+TH+S S+ +N L LG V+ V+ L+
Sbjct: 16 LDELEAKLGYRFADRQLLDSALTHASVSDGRPKKTVSSDNERLEFLGDRVLGLLVAEALM 75
Query: 94 NKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSP-------KTNSTVPAVVC 146
+ ++++R+ + E +CA M LG+ +R++P ++N T+ C
Sbjct: 76 QAFPQAAEGEMSQRLHGLVSRE-TCAAVAMSLGVGAAMRLAPGETKSGGRSNLTILGDAC 134
Query: 147 GAFRAIFGAIAVDTG 161
A+ A+ +D G
Sbjct: 135 ---EALIAAVYLDGG 146
>gi|420427294|ref|ZP_14926339.1| ribonuclease III [Helicobacter pylori Hp A-9]
gi|393042227|gb|EJB43238.1| ribonuclease III [Helicobacter pylori Hp A-9]
Length = 239
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|417840890|ref|ZP_12486998.1| Ribonuclease 3 [Haemophilus haemolyticus M19501]
gi|341950701|gb|EGT77288.1| Ribonuclease 3 [Haemophilus haemolyticus M19501]
Length = 227
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 33/48 (68%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVS 89
L+ L+++IGY F I LL++A+TH S + ++N L LG +++ +++
Sbjct: 4 LDRLERKIGYRFNDIALLKQALTHRSAATQHNERLEFLGDSILNFTIA 51
>gi|420408798|ref|ZP_14907953.1| ribonuclease III [Helicobacter pylori NQ4216]
gi|393022960|gb|EJB24075.1| ribonuclease III [Helicobacter pylori NQ4216]
Length = 239
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISNGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|389691083|ref|ZP_10179976.1| ribonuclease III [Microvirga sp. WSM3557]
gi|388589326|gb|EIM29615.1| ribonuclease III [Microvirga sp. WSM3557]
Length = 236
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE---ENNRALGILGGYVIDTSVSLRLLNKDID 98
L+ L ++GY F+ LL A+TH S + ++ + L LG V+ +++ L K
Sbjct: 8 LDELLSKLGYRFEKPELLDEALTHVSAPQAAGQSYQRLEFLGDRVLGLAIAGLLYRKFPG 67
Query: 99 ISPKDLNRRVSE----TSNVEISCAVD-GMHLGL-QKVVRVSPKTNSTVPAVVCGAFRAI 152
+L+RR++E S EI+ A D G +L L + N T+ A VC AI
Sbjct: 68 APEGELSRRLAELVRRESCAEIAIAWDVGPYLKLGAGEAHSGERRNQTILADVC---EAI 124
Query: 153 FGAIAVDTG 161
GA+ +D G
Sbjct: 125 IGAVFLDGG 133
>gi|152995275|ref|YP_001340110.1| ribonuclease III [Marinomonas sp. MWYL1]
gi|189043327|sp|A6VUP6.1|RNC_MARMS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|150836199|gb|ABR70175.1| Ribonuclease III [Marinomonas sp. MWYL1]
Length = 227
Score = 42.0 bits (97), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNK 95
+ L ++IGY F +GLL A+TH SF +NN L LG +++ ++ L ++
Sbjct: 6 QKLSRRIGYFFADLGLLELALTHRSFGGKNNERLEFLGDSILNYVIAEDLFHR 58
>gi|444374116|ref|ZP_21173423.1| ribonuclease III [Helicobacter pylori A45]
gi|443621340|gb|ELT81779.1| ribonuclease III [Helicobacter pylori A45]
Length = 239
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|420450320|ref|ZP_14949182.1| ribonuclease III [Helicobacter pylori Hp H-45]
gi|393067465|gb|EJB68275.1| ribonuclease III [Helicobacter pylori Hp H-45]
Length = 239
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|420448680|ref|ZP_14947560.1| ribonuclease III [Helicobacter pylori Hp H-44]
gi|420499772|ref|ZP_14998326.1| ribonuclease III [Helicobacter pylori Hp P-26]
gi|393066034|gb|EJB66862.1| ribonuclease III [Helicobacter pylori Hp H-44]
gi|393149752|gb|EJC50061.1| ribonuclease III [Helicobacter pylori Hp P-26]
Length = 239
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISNGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|386755684|ref|YP_006228901.1| ribonuclease III [Helicobacter pylori PeCan18]
gi|384561942|gb|AFI02408.1| ribonuclease III [Helicobacter pylori PeCan18]
Length = 239
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|345019922|ref|ZP_08783535.1| ribonuclease III [Ornithinibacillus scapharcae TW25]
Length = 227
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
L++ + F++I ++++A THSS+ E +N L LG V++ VS L K
Sbjct: 6 LEELLNIQFRNIDVVKQAFTHSSYVNEHRDLHTSDNERLEFLGDAVLELGVSQYLYRKYP 65
Query: 98 DISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAI 152
++ ++ + V E S + ++D G H+ L K ++ N PA++ F A
Sbjct: 66 EMPEGEMTKLRAAIVCEPSLEAFARSLDFGEHILLGKGEEMTGGRNR--PALLADVFEAF 123
Query: 153 FGAIAVDTG 161
GA+ +D G
Sbjct: 124 LGAVYLDQG 132
>gi|420410198|ref|ZP_14909341.1| ribonuclease III [Helicobacter pylori NQ4200]
gi|420442141|ref|ZP_14941081.1| ribonuclease III [Helicobacter pylori Hp H-36]
gi|420477590|ref|ZP_14976245.1| ribonuclease III [Helicobacter pylori Hp H-23]
gi|393028511|gb|EJB29597.1| ribonuclease III [Helicobacter pylori NQ4200]
gi|393058631|gb|EJB59519.1| ribonuclease III [Helicobacter pylori Hp H-36]
gi|393092269|gb|EJB92890.1| ribonuclease III [Helicobacter pylori Hp H-23]
Length = 239
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISNGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|337287867|ref|YP_004627339.1| Ribonuclease 3 [Thermodesulfobacterium sp. OPB45]
gi|334901605|gb|AEH22411.1| Ribonuclease 3 [Thermodesulfobacterium geofontis OPF15]
Length = 237
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 18/134 (13%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSF-------SEENNRALGILGGYVIDTSVSLRLLN 94
LE L++ + + FK+ LL+ A+TH S+ + E+N L LG V++ +SL L
Sbjct: 5 LEDLERALNFKFKNKDLLKSALTHKSYKISHKDINWEDNERLEFLGDSVLNLCISLLLFQ 64
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCG 147
K + L ++ V + + ++IS + D ++LG ++ ++ K+ + A
Sbjct: 65 KFKEDREGALTQKRAYLVCKNTLIKISKKLNLCDYIYLG-KREEKLDKKSKENICA---R 120
Query: 148 AFRAIFGAIAVDTG 161
A A+ GAI ++ G
Sbjct: 121 AMEALIGAIFLEGG 134
>gi|315652049|ref|ZP_07905050.1| ribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485696|gb|EFU76077.1| ribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
Length = 228
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L LQ+ +GY +K+ LL++A+THSS++ E+ N L LG V++ VS
Sbjct: 5 LNELQELLGYEYKNRELLKQALTHSSYANEHQLGKNGSNERLEFLGDAVLEL-VSSEFFY 63
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFR 150
+ P+ ++ + E + ++ L + +R+ T P+++ F
Sbjct: 64 EVYPDKPEGELTKIRASFVCEPALVDCAGNIRLSEFIRLGKGEEHTGGRFRPSIISDTFE 123
Query: 151 AIFGAIAVDTGKCDDAGDVFLR 172
A+ G+I +D G +A +V L+
Sbjct: 124 AVIGSIYLDGGFA-NAKEVILK 144
>gi|315122353|ref|YP_004062842.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495755|gb|ADR52354.1| ribonuclease III [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 232
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS---EENNRALGILGGYVIDTSVSLRLLNKDID 98
L L+++IGYTF + LL++A+THSS +EN L LG V+ +S L +
Sbjct: 11 LSALERRIGYTFSNKYLLKKALTHSSICHSPQENYERLEFLGDRVLGILISKLLFDYFDS 70
Query: 99 ISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCG----AFRAIFG 154
+L+ R + + E +C+ L L + VS V V G ++
Sbjct: 71 AKEGELSIRFNSLVSAE-TCSQVAKELELDSFIYVSSDLRMEVCKFVKGIQADVVESLIA 129
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 130 ALYLDGG 136
>gi|282600119|ref|ZP_05973085.2| ribonuclease III [Providencia rustigianii DSM 4541]
gi|282566488|gb|EFB72023.1| ribonuclease III [Providencia rustigianii DSM 4541]
Length = 263
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQ+++GYTF LL +A+TH S S ++N L LG ++ ++ L ++ +
Sbjct: 43 LEKLQRKLGYTFTQHDLLIQALTHRSASSKHNERLEFLGDSILSFVIANDLYHRFPKVDE 102
Query: 102 KDLNR 106
D++R
Sbjct: 103 GDMSR 107
>gi|421721305|ref|ZP_16160581.1| ribonuclease III [Helicobacter pylori R055a]
gi|407225066|gb|EKE94839.1| ribonuclease III [Helicobacter pylori R055a]
Length = 239
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 35 SSPFAT---ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYITPNSSYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +R+S P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRISSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|420418603|ref|ZP_14917695.1| ribonuclease III [Helicobacter pylori NQ4076]
gi|393033429|gb|EJB34492.1| ribonuclease III [Helicobacter pylori NQ4076]
Length = 239
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRAAIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|391348710|ref|XP_003748587.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
Length = 1732
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 75/179 (41%), Gaps = 38/179 (21%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSS-----FSEENNRALGILGGYVIDTSVSLRL 92
+ +E ++KQI +TFKS GL+ +A+TH S +E+ NR L +G V D ++L +
Sbjct: 1436 YQYLIEKVEKQIDFTFKSKGLVLQAITHHSCRDHLLTEDYNR-LAFIGEAVADYLLTLYI 1494
Query: 93 LNKDIDISPKDLNRRVSETSNVEISCA----------------------------VDGMH 124
++ P L+ S N +++ +D +
Sbjct: 1495 YGLSSNLDPGQLSDLRSALINNQVTAYAVVRAELHTVLLYTNSKLFSAIRKYLENIDDIG 1554
Query: 125 LGLQKVV---RVSPKTNSTVPAVVCGAFRAIFGAIAVDTGKC-DDAGDVFLRVHSGEVG 179
L L V+ + VP + ++I GA+ +D+GK + + +R+ E+
Sbjct: 1555 LRLNTVLGDWETDDAEEAEVPRPLARILQSILGAVFIDSGKSFESVWRILVRIMGHEIA 1613
>gi|399991331|ref|YP_006571571.1| ribonuclease 3 [Phaeobacter gallaeciensis DSM 17395 = CIP 105210]
gi|398655886|gb|AFO89852.1| ribonuclease 3 [Phaeobacter gallaeciensis DSM 17395 = CIP 105210]
Length = 228
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN---NRALGILGGYVIDTSVSLRLLNKDID 98
+ + +IGY+F LL RA+TH+S S N N+ L LG V+ ++ LL+ D
Sbjct: 7 MRAFETRIGYSFSQPALLVRALTHASVSSPNRQDNQRLEFLGDRVLGLVMATALLDTDKA 66
Query: 99 ISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVP----AVVCGAFRAIFG 154
+ L R + E +CA + L V+++ + A++ A A+
Sbjct: 67 ATEGQLAPRFNALVRKE-TCADVARDIDLGAVLKLGRSETMSGGRRKLALLGDAMEAVIA 125
Query: 155 AIAVDTGKCDDAGDVFLRVHSGEVGK 180
A+ D G D A ++ LR+ +G+
Sbjct: 126 AVYKDGG-FDAAQELILRLWGNRIGR 150
>gi|420501452|ref|ZP_14999996.1| ribonuclease III [Helicobacter pylori Hp P-30]
gi|393150258|gb|EJC50566.1| ribonuclease III [Helicobacter pylori Hp P-30]
Length = 239
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISNGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|242215871|ref|XP_002473747.1| predicted protein [Postia placenta Mad-698-R]
gi|220727142|gb|EED81071.1| predicted protein [Postia placenta Mad-698-R]
Length = 1725
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 36 SPFATALETLQKQIGYTFKSIGLLRRAMTH---SSFSEENNRALGILGGYVIDTSVSLRL 92
SP + LQ+ +GY F+S LL AMTH +SF + + L LG V+D +V L
Sbjct: 1110 SPVSALFTLLQESLGYRFRSGRLLLEAMTHPSFNSFETSSYQRLEFLGDAVVDLAVMRYL 1169
Query: 93 LNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKV-----VRVSPKTNSTVP 142
NK + L+ S +V LGL K+ V +S N+ VP
Sbjct: 1170 YNKFPQATSGQLSWARSRAVCAPSLASVAVKRLGLHKLLLVNNVELSIAINNYVP 1224
>gi|340355030|ref|ZP_08677724.1| ribonuclease III [Sporosarcina newyorkensis 2681]
gi|339622827|gb|EGQ27340.1| ribonuclease III [Sporosarcina newyorkensis 2681]
Length = 255
Score = 42.0 bits (97), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
+ LQ+Q+G FK LL A THSS+ E +N L LG V++ VS L
Sbjct: 24 FKALQQQLGVQFKDENLLFNAFTHSSYVNEHRRKKFSDNERLEFLGDAVLELGVSKFLFR 83
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
+ S +L + V E S V+ S + G ++ L K ++ PA++ F
Sbjct: 84 TEPTKSEGELTKLRAAIVCEPSLVKFSNELHFGDYILLGKGEELT--GGRMRPALLADVF 141
Query: 150 RAIFGAIAVDTG 161
A GA+ +D G
Sbjct: 142 EAYIGALYLDQG 153
>gi|116515099|ref|YP_802728.1| hypothetical protein BCc_163 [Buchnera aphidicola BCc]
gi|122285505|sp|Q057R4.1|RNC_BUCCC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116256953|gb|ABJ90635.1| ribonuclease III [Buchnera aphidicola BCc]
Length = 226
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILG 80
++ LQK IGYTF +I LL+ A+TH S S ++N L LG
Sbjct: 6 MKKLQKFIGYTFTNITLLKHALTHRSASSQHNERLEFLG 44
>gi|312622598|ref|YP_004024211.1| ribonuclease iii [Caldicellulosiruptor kronotskyensis 2002]
gi|312203065|gb|ADQ46392.1| ribonuclease III [Caldicellulosiruptor kronotskyensis 2002]
Length = 222
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA---LGILGGYVIDTSVSLRLLNKDID 98
+E ++K +GY FK LLR A+TH S + N L LG ++ +VS L +
Sbjct: 1 MEEIEKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPE 60
Query: 99 ISPKDL-NRRVSETSNVEISCAVDGMHLGLQKVV--RVSPKTNSTVPAVVCGAFRAIFGA 155
+S +L N R + + +S + ++L + R + +++ AIFGA
Sbjct: 61 LSEGELTNIRAAVVCSQTLSKIAEKLNLKNHIIFGKREKMEKFHENKSILADVVEAIFGA 120
Query: 156 IAVDTG 161
I +++G
Sbjct: 121 IFIESG 126
>gi|197285743|ref|YP_002151615.1| ribonuclease III [Proteus mirabilis HI4320]
gi|425068680|ref|ZP_18471796.1| ribonuclease 3 [Proteus mirabilis WGLW6]
gi|425071798|ref|ZP_18474904.1| ribonuclease 3 [Proteus mirabilis WGLW4]
gi|238693201|sp|B4F047.1|RNC_PROMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|194683230|emb|CAR43912.1| RNase III, ds RNA [Proteus mirabilis HI4320]
gi|404598167|gb|EKA98653.1| ribonuclease 3 [Proteus mirabilis WGLW4]
gi|404599059|gb|EKA99521.1| ribonuclease 3 [Proteus mirabilis WGLW6]
Length = 226
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 8/144 (5%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQK++GYTFK LL +A+TH S S ++N L LG ++ ++ L ++ + D+
Sbjct: 9 LQKKLGYTFKQNELLLQALTHRSASSKHNERLEFLGDSILSYVIANALYHRFPRVDEGDM 68
Query: 105 NR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVD 159
+R R + ++ LG + +R+ P + +++ A+ GAI +D
Sbjct: 69 SRMRATLVRGNTLAELAREFELG--ECLRLGPGELKSGGFRRESILADTVEALIGAIFLD 126
Query: 160 TGKCDDAGDVFLRVHSGEVGKALP 183
+ + ++ L+ + + + P
Sbjct: 127 S-DIQNIENIILKWYENRLAEISP 149
>gi|363889235|ref|ZP_09316599.1| ribonuclease III [Eubacteriaceae bacterium CM5]
gi|361966837|gb|EHL19719.1| ribonuclease III [Eubacteriaceae bacterium CM5]
Length = 233
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 32 FKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDT 86
K+ F + +E K IGY F++ GL++ A+THSS+ EN N L LG ++
Sbjct: 1 MKSDKAFFSGIE---KNIGYIFENKGLIKTALTHSSYVNENKNSRDNERLEFLGDSILSL 57
Query: 87 SVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTV 141
VS + N ++ +L + V E S + ++ + G ++ L K + S T
Sbjct: 58 VVSNYIFNYKSNLKEGELTKIRASCVCEKSLINVANKLKIGDYIRLGKGEQNSGGKKRT- 116
Query: 142 PAVVCGAFRAIFGAIAVDT 160
+++ A AI AI +D+
Sbjct: 117 -SILADATEAIIAAIYLDS 134
>gi|418576384|ref|ZP_13140530.1| dsRNA-specific ribonuclease RNase III [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325446|gb|EHY92578.1| dsRNA-specific ribonuclease RNase III [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 236
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSL 90
F E +++ F + L ++A +HSSF + +N L LG V++ +VS
Sbjct: 5 FQNKFEKKMQELNLDFNRVDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 64
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L + + T E S + + L ++ + KT T P++V
Sbjct: 65 YLFDKYPELPEGNLTK-MRATIVCEPSLVIFANKIQLNDLILLGKGEEKTGGRTRPSLVS 123
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 124 DAFEAFVGALYLDQG 138
>gi|444364773|ref|ZP_21165039.1| RNase3 domain protein, partial [Burkholderia cenocepacia BC7]
gi|443592189|gb|ELT61012.1| RNase3 domain protein, partial [Burkholderia cenocepacia BC7]
Length = 88
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L+ ++ Y F++ LLR+A+TH S S +N L LG V++ +V+ L + +
Sbjct: 3 LSQLESRLRYEFRNAELLRQALTHRSHSATHNERLEFLGDSVLNCAVAALLFQRFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAVD 121
DL+R V + S EI+ A++
Sbjct: 63 GDLSRVRANLVKQQSLYEIAQALN 86
>gi|386746174|ref|YP_006219391.1| ribonuclease III [Helicobacter pylori HUP-B14]
gi|384552423|gb|AFI07371.1| ribonuclease III [Helicobacter pylori HUP-B14]
Length = 239
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYTTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----SLQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|406589966|ref|ZP_11064377.1| ribonuclease III, partial [Enterococcus sp. GMD1E]
gi|404470038|gb|EKA14718.1| ribonuclease III, partial [Enterococcus sp. GMD1E]
Length = 220
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
L++ F + LL +A THSS+ E +N L LG V++ VS L
Sbjct: 1 LKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYP 60
Query: 98 DISPKDLNR------RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS---TVPAVVCGA 148
+ L + R S C D Q V+ + NS T PA++C
Sbjct: 61 HLPEGKLTKTRAAIVREDSLSKFAKECHFD------QYVLLGKGEENSGGRTRPALLCDL 114
Query: 149 FRAIFGAIAVDTG 161
F A GA+ +D G
Sbjct: 115 FEAFLGALYLDQG 127
>gi|400755830|ref|YP_006564198.1| ribonuclease 3 [Phaeobacter gallaeciensis 2.10]
gi|398654983|gb|AFO88953.1| ribonuclease 3 [Phaeobacter gallaeciensis 2.10]
Length = 228
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN---NRALGILGGYVIDTSVSLRLLNKDID 98
+ + +IGY+F LL RA+TH+S S N N+ L LG V+ ++ LL+ D
Sbjct: 7 MRAFETRIGYSFSQPALLVRALTHASVSSPNRQDNQRLEFLGDRVLGLVMATALLDTDKA 66
Query: 99 ISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVP----AVVCGAFRAIFG 154
+ L R + E +CA + L V+++ + A++ A A+
Sbjct: 67 ATEGQLAPRFNALVRKE-TCADVARDIDLGAVLKLGRSETMSGGRRKLALLGDAMEAVIA 125
Query: 155 AIAVDTGKCDDAGDVFLRVHSGEVGK 180
A+ D G D A ++ LR+ +G+
Sbjct: 126 AVYKDGG-FDAAQELILRLWGNRIGR 150
>gi|134299915|ref|YP_001113411.1| ribonuclease III [Desulfotomaculum reducens MI-1]
gi|189043307|sp|A4J683.1|RNC_DESRM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|134052615|gb|ABO50586.1| RNAse III [Desulfotomaculum reducens MI-1]
Length = 246
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 14/129 (10%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLNKDI 97
L+ ++G+ + + LL +A+THSS EN N+ L LG V++ +S L
Sbjct: 11 LKTRLGFKWHNPTLLIQALTHSSCVHENRGHGLCHNQRLEFLGDAVLELIISEHLYKMFP 70
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
D + +L + R S ++ G+ LG + +R+ + P+++ AF A+
Sbjct: 71 DRTEGELTKMRASSVCEPSLAKVARGLDLG--RCLRMGRGEERSGGRERPSILADAFEAL 128
Query: 153 FGAIAVDTG 161
GAI +D G
Sbjct: 129 LGAIYLDQG 137
>gi|420404397|ref|ZP_14903580.1| ribonuclease III [Helicobacter pylori CPY6261]
gi|393018276|gb|EJB19427.1| ribonuclease III [Helicobacter pylori CPY6261]
Length = 238
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 35 SSPFAT--ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLR 91
+SP+ T + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGEL 67
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAVDGMH--------LGLQKVVRVSP----KTNS 139
L +K L++ + ++ H + LQ +RVS +
Sbjct: 68 LYHKFYQYDEGKLSK---------LRASIVSAHGFTKLAKVIALQDYLRVSSSEEISSGR 118
Query: 140 TVPAVVCGAFRAIFGAIAVDTG 161
P+++ AF A+ + ++ G
Sbjct: 119 EKPSILSSAFEALMAGVYLEAG 140
>gi|420472249|ref|ZP_14970942.1| ribonuclease III [Helicobacter pylori Hp H-18]
gi|393089066|gb|EJB89707.1| ribonuclease III [Helicobacter pylori Hp H-18]
Length = 239
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 17/143 (11%)
Query: 31 RFKTSSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDT 86
+ +SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+
Sbjct: 4 KLSQNSPYVTPNNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGL 63
Query: 87 SVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN---- 138
+ L +K L++ VS +++ A+ LQ +RVS
Sbjct: 64 VIGELLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKG 118
Query: 139 STVPAVVCGAFRAIFGAIAVDTG 161
P+++ AF A+ + ++ G
Sbjct: 119 REKPSILSSAFEALMAGVYLEAG 141
>gi|302386299|ref|YP_003822121.1| ribonuclease III [Clostridium saccharolyticum WM1]
gi|302196927|gb|ADL04498.1| ribonuclease III [Clostridium saccharolyticum WM1]
Length = 233
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L+ L+++IGY F L+ +AMTHSS++ E+ N L LG V++ S L +
Sbjct: 5 LKELEERIGYRFSDRHLMTQAMTHSSYANEHRLNKLECNERLEFLGDSVLEVVSSDCLYH 64
Query: 95 KDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRA 151
K + DL + R S ++ + + LG ++ + ++V A A
Sbjct: 65 KYPEKPEGDLTKIRASIVCEPTLAYCAESIRLGEYLLLGKGEEATGGRGRASIVSDAMEA 124
Query: 152 IFGAIAVDTG 161
+ GAI +D G
Sbjct: 125 LIGAIYLDGG 134
>gi|227550768|ref|ZP_03980817.1| ribonuclease III [Enterococcus faecium TX1330]
gi|314937654|ref|ZP_07844980.1| ribonuclease III [Enterococcus faecium TX0133a04]
gi|314942847|ref|ZP_07849660.1| ribonuclease III [Enterococcus faecium TX0133C]
gi|314948017|ref|ZP_07851421.1| ribonuclease III [Enterococcus faecium TX0082]
gi|314950935|ref|ZP_07854004.1| ribonuclease III [Enterococcus faecium TX0133A]
gi|314991417|ref|ZP_07856894.1| ribonuclease III [Enterococcus faecium TX0133B]
gi|314995062|ref|ZP_07860182.1| ribonuclease III [Enterococcus faecium TX0133a01]
gi|389867284|ref|YP_006374707.1| ribonuclease III [Enterococcus faecium DO]
gi|424763790|ref|ZP_18191255.1| ribonuclease III [Enterococcus faecium TX1337RF]
gi|424791403|ref|ZP_18217835.1| ribonuclease III [Enterococcus faecium V689]
gi|424797447|ref|ZP_18223031.1| ribonuclease III [Enterococcus faecium S447]
gi|424828237|ref|ZP_18252973.1| ribonuclease III [Enterococcus faecium R501]
gi|424854841|ref|ZP_18279184.1| ribonuclease III [Enterococcus faecium R499]
gi|424869418|ref|ZP_18293122.1| ribonuclease III [Enterococcus faecium R497]
gi|424950205|ref|ZP_18365376.1| ribonuclease III [Enterococcus faecium R496]
gi|424954344|ref|ZP_18369246.1| ribonuclease III [Enterococcus faecium R494]
gi|424958431|ref|ZP_18373077.1| ribonuclease III [Enterococcus faecium R446]
gi|424960282|ref|ZP_18374813.1| ribonuclease III [Enterococcus faecium P1986]
gi|424965596|ref|ZP_18379547.1| ribonuclease III [Enterococcus faecium P1190]
gi|424969514|ref|ZP_18383084.1| ribonuclease III [Enterococcus faecium P1140]
gi|424970489|ref|ZP_18383998.1| ribonuclease III [Enterococcus faecium P1139]
gi|424974109|ref|ZP_18387361.1| ribonuclease III [Enterococcus faecium P1137]
gi|424976652|ref|ZP_18389725.1| ribonuclease III [Enterococcus faecium P1123]
gi|424981080|ref|ZP_18393833.1| ribonuclease III [Enterococcus faecium ERV99]
gi|424984594|ref|ZP_18397122.1| ribonuclease III [Enterococcus faecium ERV69]
gi|424987454|ref|ZP_18399829.1| ribonuclease III [Enterococcus faecium ERV38]
gi|424990906|ref|ZP_18403096.1| ribonuclease III [Enterococcus faecium ERV26]
gi|424994563|ref|ZP_18406498.1| ribonuclease III [Enterococcus faecium ERV168]
gi|424997392|ref|ZP_18409155.1| ribonuclease III [Enterococcus faecium ERV165]
gi|425001410|ref|ZP_18412929.1| ribonuclease III [Enterococcus faecium ERV161]
gi|425003989|ref|ZP_18415319.1| ribonuclease III [Enterococcus faecium ERV102]
gi|425006908|ref|ZP_18418063.1| ribonuclease III [Enterococcus faecium ERV1]
gi|425010840|ref|ZP_18421771.1| ribonuclease III [Enterococcus faecium E422]
gi|425014158|ref|ZP_18424853.1| ribonuclease III [Enterococcus faecium E417]
gi|425017866|ref|ZP_18428347.1| ribonuclease III [Enterococcus faecium C621]
gi|425020875|ref|ZP_18431162.1| ribonuclease III [Enterococcus faecium C497]
gi|425030492|ref|ZP_18435665.1| ribonuclease III [Enterococcus faecium C1904]
gi|425032631|ref|ZP_18437657.1| ribonuclease III [Enterococcus faecium 515]
gi|425035582|ref|ZP_18440417.1| ribonuclease III [Enterococcus faecium 514]
gi|425037922|ref|ZP_18442559.1| ribonuclease III [Enterococcus faecium 513]
gi|425041759|ref|ZP_18446142.1| ribonuclease III [Enterococcus faecium 511]
gi|425045378|ref|ZP_18449484.1| ribonuclease III [Enterococcus faecium 510]
gi|425048552|ref|ZP_18452452.1| ribonuclease III [Enterococcus faecium 509]
gi|425051643|ref|ZP_18455300.1| ribonuclease III [Enterococcus faecium 506]
gi|425054205|ref|ZP_18457718.1| ribonuclease III [Enterococcus faecium 505]
gi|425058185|ref|ZP_18461576.1| ribonuclease III [Enterococcus faecium 504]
gi|425060584|ref|ZP_18463875.1| ribonuclease III [Enterococcus faecium 503]
gi|227180086|gb|EEI61058.1| ribonuclease III [Enterococcus faecium TX1330]
gi|313590788|gb|EFR69633.1| ribonuclease III [Enterococcus faecium TX0133a01]
gi|313593897|gb|EFR72742.1| ribonuclease III [Enterococcus faecium TX0133B]
gi|313596944|gb|EFR75789.1| ribonuclease III [Enterococcus faecium TX0133A]
gi|313598319|gb|EFR77164.1| ribonuclease III [Enterococcus faecium TX0133C]
gi|313643031|gb|EFS07611.1| ribonuclease III [Enterococcus faecium TX0133a04]
gi|313645615|gb|EFS10195.1| ribonuclease III [Enterococcus faecium TX0082]
gi|388532533|gb|AFK57725.1| ribonuclease III [Enterococcus faecium DO]
gi|402421966|gb|EJV54209.1| ribonuclease III [Enterococcus faecium TX1337RF]
gi|402919418|gb|EJX40018.1| ribonuclease III [Enterococcus faecium V689]
gi|402921003|gb|EJX41473.1| ribonuclease III [Enterococcus faecium S447]
gi|402922876|gb|EJX43220.1| ribonuclease III [Enterococcus faecium R501]
gi|402932233|gb|EJX51763.1| ribonuclease III [Enterococcus faecium R499]
gi|402933494|gb|EJX52920.1| ribonuclease III [Enterococcus faecium R496]
gi|402935590|gb|EJX54830.1| ribonuclease III [Enterococcus faecium R497]
gi|402936978|gb|EJX56122.1| ribonuclease III [Enterococcus faecium R494]
gi|402940215|gb|EJX59069.1| ribonuclease III [Enterococcus faecium R446]
gi|402943291|gb|EJX61787.1| ribonuclease III [Enterococcus faecium P1190]
gi|402948361|gb|EJX66507.1| ribonuclease III [Enterococcus faecium P1986]
gi|402948484|gb|EJX66621.1| ribonuclease III [Enterococcus faecium P1140]
gi|402957456|gb|EJX74847.1| ribonuclease III [Enterococcus faecium P1137]
gi|402961653|gb|EJX78665.1| ribonuclease III [Enterococcus faecium P1139]
gi|402964694|gb|EJX81462.1| ribonuclease III [Enterococcus faecium ERV99]
gi|402968541|gb|EJX85020.1| ribonuclease III [Enterococcus faecium ERV69]
gi|402968950|gb|EJX85399.1| ribonuclease III [Enterococcus faecium P1123]
gi|402974331|gb|EJX90387.1| ribonuclease III [Enterococcus faecium ERV38]
gi|402978365|gb|EJX94109.1| ribonuclease III [Enterococcus faecium ERV26]
gi|402979859|gb|EJX95504.1| ribonuclease III [Enterococcus faecium ERV168]
gi|402986368|gb|EJY01496.1| ribonuclease III [Enterococcus faecium ERV165]
gi|402986862|gb|EJY01966.1| ribonuclease III [Enterococcus faecium ERV161]
gi|402990642|gb|EJY05507.1| ribonuclease III [Enterococcus faecium ERV102]
gi|402996112|gb|EJY10515.1| ribonuclease III [Enterococcus faecium ERV1]
gi|402998652|gb|EJY12898.1| ribonuclease III [Enterococcus faecium E422]
gi|402999508|gb|EJY13695.1| ribonuclease III [Enterococcus faecium E417]
gi|403002725|gb|EJY16671.1| ribonuclease III [Enterococcus faecium C1904]
gi|403003493|gb|EJY17390.1| ribonuclease III [Enterococcus faecium C621]
gi|403008053|gb|EJY21582.1| ribonuclease III [Enterococcus faecium C497]
gi|403012388|gb|EJY25615.1| ribonuclease III [Enterococcus faecium 515]
gi|403017688|gb|EJY30416.1| ribonuclease III [Enterococcus faecium 514]
gi|403020703|gb|EJY33211.1| ribonuclease III [Enterococcus faecium 513]
gi|403025540|gb|EJY37618.1| ribonuclease III [Enterococcus faecium 511]
gi|403027144|gb|EJY39053.1| ribonuclease III [Enterococcus faecium 510]
gi|403030483|gb|EJY42166.1| ribonuclease III [Enterococcus faecium 509]
gi|403036473|gb|EJY47821.1| ribonuclease III [Enterococcus faecium 505]
gi|403037263|gb|EJY48563.1| ribonuclease III [Enterococcus faecium 506]
gi|403038979|gb|EJY50160.1| ribonuclease III [Enterococcus faecium 504]
gi|403042468|gb|EJY53418.1| ribonuclease III [Enterococcus faecium 503]
Length = 231
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
L++ F + LL +A THSS+ E +N L LG V++ VS L
Sbjct: 12 LKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYP 71
Query: 98 DISPKDLNR------RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS---TVPAVVCGA 148
+ L + R S C D Q V+ + NS T PA++C
Sbjct: 72 HLPEGKLTKTRAAIVREDSLSKFAKECHFD------QYVLLGKGEENSGGRTRPALLCDL 125
Query: 149 FRAIFGAIAVDTG 161
F A GA+ +D G
Sbjct: 126 FEAFLGALYLDQG 138
>gi|388602698|ref|ZP_10161094.1| ribonuclease III [Vibrio campbellii DS40M4]
Length = 225
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
+ ++ L++++GY FK GL+ A+TH S + ++N L LG ++ ++ L ++ +
Sbjct: 3 SPIDKLERKLGYQFKDAGLINLALTHRSANSKHNERLEFLGDSILSFVIADDLYHRFPKV 62
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGA 155
+ D++ R+ T + A G L +++ P + +++ A AI GA
Sbjct: 63 NEGDMS-RMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGA 121
Query: 156 IAVDT 160
I +D+
Sbjct: 122 IYLDS 126
>gi|420422011|ref|ZP_14921089.1| ribonuclease III [Helicobacter pylori NQ4110]
gi|393038529|gb|EJB39563.1| ribonuclease III [Helicobacter pylori NQ4110]
Length = 239
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYTTPNNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAQGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|430848263|ref|ZP_19466089.1| ribonuclease 3 [Enterococcus faecium E1133]
gi|430535606|gb|ELA76006.1| ribonuclease 3 [Enterococcus faecium E1133]
Length = 228
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
L++ F + LL +A THSS+ E +N L LG V++ VS L
Sbjct: 9 LKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYP 68
Query: 98 DISPKDLNR------RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS---TVPAVVCGA 148
+ L + R S C D Q V+ + NS T PA++C
Sbjct: 69 HLPEGKLTKTRAAIVREDSLSKFAKECHFD------QYVLLGKGEENSGGRTRPALLCDL 122
Query: 149 FRAIFGAIAVDTG 161
F A GA+ +D G
Sbjct: 123 FEAFLGALYLDQG 135
>gi|438000104|ref|YP_007183837.1| ribonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
(ex Strigomonas culicis)]
gi|451813034|ref|YP_007449487.1| ribonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
gi|429339338|gb|AFZ83760.1| ribonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
(ex Strigomonas culicis)]
gi|451779003|gb|AGF49883.1| ribonuclease III [Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
Length = 236
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
L+ + Y F + LL A+TH S+ +N L LG V++ ++++ L K DI L
Sbjct: 6 LEYSLNYKFSNNNLLELALTHRSYGSPHNERLEFLGDSVLNFAITIFLFEKYSDIDEGGL 65
Query: 105 NR---RVSETSNVEISCAVDGMHLGLQKVVRVS----PKTNSTVPAVVCGAFRAIFGAIA 157
+R R+ + + S A L L + +++ P+++ A+FGA+
Sbjct: 66 SRLRARLVQQN----SLATIASDLNLSRYLKLGDGELKSGGCNRPSILADCLEAVFGAVF 121
Query: 158 VDT 160
D+
Sbjct: 122 KDS 124
>gi|328905041|gb|AEB54796.1| dicer 2 [Litopenaeus vannamei]
Length = 1502
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA------LGILGGYVIDTSVSLRLLNK 95
L+ L+K+IGYTF+ + +A+THSS+ NN+ L LG V+D V+ + +
Sbjct: 1239 LDRLEKKIGYTFRDRSFIVQAVTHSSYV--NNQVTDCYQRLEFLGDAVLDYLVTCHIFCR 1296
Query: 96 DIDISP---KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTV 141
D SP DL + + + A +H Q ++ ++PK +++
Sbjct: 1297 FTDYSPGQLSDLRSYFVKNDTLGRAAAKGKLH---QHLLHLNPKLEASI 1342
>gi|260899641|ref|ZP_05908036.1| ribonuclease III [Vibrio parahaemolyticus AQ4037]
gi|308110559|gb|EFO48099.1| ribonuclease III [Vibrio parahaemolyticus AQ4037]
Length = 225
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
+ ++ L++++GY FK GL+ A+TH S + ++N L LG ++ ++ L ++ +
Sbjct: 3 SPIDKLERKLGYQFKDAGLINLALTHRSANSKHNERLEFLGDSILSFVIADDLYHRFPKV 62
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGA 155
+ D++ R+ T + A G L +++ P + +++ A AI GA
Sbjct: 63 NEGDMS-RMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGA 121
Query: 156 IAVDT 160
I +D+
Sbjct: 122 IYLDS 126
>gi|156975792|ref|YP_001446699.1| ribonuclease III [Vibrio harveyi ATCC BAA-1116]
gi|269960405|ref|ZP_06174778.1| Ribonuclease 3 [Vibrio harveyi 1DA3]
gi|424047713|ref|ZP_17785271.1| ribonuclease III [Vibrio cholerae HENC-03]
gi|189043375|sp|A7MZA8.1|RNC_VIBHB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|156527386|gb|ABU72472.1| hypothetical protein VIBHAR_03536 [Vibrio harveyi ATCC BAA-1116]
gi|269834832|gb|EEZ88918.1| Ribonuclease 3 [Vibrio harveyi 1DA3]
gi|408883677|gb|EKM22456.1| ribonuclease III [Vibrio cholerae HENC-03]
Length = 225
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
+ ++ L++++GY FK GL+ A+TH S + ++N L LG ++ ++ L ++ +
Sbjct: 3 SPIDKLERKLGYQFKDAGLINLALTHRSANSKHNERLEFLGDSILSFVIADDLYHRFPKV 62
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGA 155
+ D++ R+ T + A G L +++ P + +++ A AI GA
Sbjct: 63 NEGDMS-RMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGA 121
Query: 156 IAVDT 160
I +D+
Sbjct: 122 IYLDS 126
>gi|420494167|ref|ZP_14992736.1| ribonuclease III [Helicobacter pylori Hp P-16]
gi|393110968|gb|EJC11492.1| ribonuclease III [Helicobacter pylori Hp P-16]
Length = 232
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 35 SSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLL 93
+SP+ T L+K +GY+FK LL +A+TH S NN L LG V+ + L
Sbjct: 8 NSPYVT----LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLY 63
Query: 94 NKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVV 145
+K L++ VS +++ A+ LQ +RVS P+++
Sbjct: 64 HKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKPSIL 118
Query: 146 CGAFRAIFGAIAVDTG 161
AF A+ + ++ G
Sbjct: 119 SSAFEALMAGVYLEAG 134
>gi|420406849|ref|ZP_14906019.1| ribonuclease III [Helicobacter pylori CPY6311]
gi|393023686|gb|EJB24800.1| ribonuclease III [Helicobacter pylori CPY6311]
Length = 238
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 35 SSPFAT--ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLR 91
+SP+AT + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYATNSSYITLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGEL 67
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAVDGMH--------LGLQKVVRVSPKTN----S 139
L +K L++ + ++ H + LQ +R+S
Sbjct: 68 LYHKFYQYDEGKLSK---------LRASIVSAHGFTKLAKVIALQDYLRISSSEEISNGR 118
Query: 140 TVPAVVCGAFRAIFGAIAVDTG 161
P+++ AF A+ + ++ G
Sbjct: 119 EKPSILSSAFEALMAGVYLEAG 140
>gi|422605849|ref|ZP_16677861.1| ribonuclease III, partial [Pseudomonas syringae pv. mori str.
301020]
gi|330889503|gb|EGH22164.1| ribonuclease III [Pseudomonas syringae pv. mori str. 301020]
Length = 52
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVID 85
+ +L L++Q+GYTFK L+ A+TH SF+ NN L LG +++
Sbjct: 2 SVSLSRLERQLGYTFKDQELMVLALTHRSFAGRNNERLEFLGDAILN 48
>gi|431806036|ref|YP_007232937.1| Ribonuclease III [Liberibacter crescens BT-1]
gi|430800011|gb|AGA64682.1| Ribonuclease III [Liberibacter crescens BT-1]
Length = 240
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 11/138 (7%)
Query: 32 FKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSS---FSEENNRALGILGGYVIDTSV 88
+ +A LE ++ IGY F + LL++A+THSS F EEN L LG ++ +
Sbjct: 3 YSKKQSYAYFLE-IESHIGYIFSNKDLLKKALTHSSMNRFYEENYERLEFLGDRILGFCI 61
Query: 89 SLRLLNKDIDISPK-DLNRRVSETSNVEISCAVDGMHLGLQKVVRVSP--KTNSTVPAVV 145
+ +LL + +++ + +L+ R + + E +C+ L L +RV K S P V
Sbjct: 62 A-KLLFDNFNLAKEGELSVRFNHLVSAE-TCSQVAEELQLHLFIRVGSDLKKVSGKPIVN 119
Query: 146 CGA--FRAIFGAIAVDTG 161
A ++ AI +D G
Sbjct: 120 IQADVIESLIAAIYLDGG 137
>gi|91201952|emb|CAJ75012.1| similar to ribonuclease III [Candidatus Kuenenia stuttgartiensis]
Length = 236
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 46 QKQIGYTFKSIGLLRRAMTHSSFSEEN---NRALGILGGYVIDTSVSLRLLNKDIDISPK 102
Q IGY+FK + LL +A+TH+S EN N L LG V+ +S L S
Sbjct: 17 QNIIGYSFKKMLLLEKALTHTSCRVENNFSNERLEFLGDAVLGMIISDYLYKTMPHYSEG 76
Query: 103 DLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST---VPAVVCGAFRAIFGAIAVD 159
+L V + + A GM GL++ + V N +++ F A+ AI +D
Sbjct: 77 ELT-NVKSVVVSQSTLAKVGMEAGLKEFLLVGRGLNDRDLFPKSLLANVFEALIAAIYID 135
Query: 160 TGKCDDAGDVFLRVHSGEV 178
G + A + LR E+
Sbjct: 136 GG-IEAASEFTLRYLKKEI 153
>gi|69246105|ref|ZP_00603811.1| Ribonuclease III [Enterococcus faecium DO]
gi|257878770|ref|ZP_05658423.1| ribonuclease III [Enterococcus faecium 1,230,933]
gi|257881410|ref|ZP_05661063.1| ribonuclease III [Enterococcus faecium 1,231,502]
gi|257885678|ref|ZP_05665331.1| ribonuclease III [Enterococcus faecium 1,231,501]
gi|257887975|ref|ZP_05667628.1| ribonuclease III [Enterococcus faecium 1,141,733]
gi|257890628|ref|ZP_05670281.1| ribonuclease III [Enterococcus faecium 1,231,410]
gi|257893222|ref|ZP_05672875.1| ribonuclease III [Enterococcus faecium 1,231,408]
gi|257896407|ref|ZP_05676060.1| ribonuclease III [Enterococcus faecium Com12]
gi|257899381|ref|ZP_05679034.1| ribonuclease III [Enterococcus faecium Com15]
gi|260558338|ref|ZP_05830534.1| ribonuclease III [Enterococcus faecium C68]
gi|261207043|ref|ZP_05921732.1| ribonuclease III [Enterococcus faecium TC 6]
gi|289565324|ref|ZP_06445774.1| ribonuclease III [Enterococcus faecium D344SRF]
gi|293379492|ref|ZP_06625636.1| ribonuclease III [Enterococcus faecium PC4.1]
gi|293556818|ref|ZP_06675379.1| ribonuclease III [Enterococcus faecium E1039]
gi|293562991|ref|ZP_06677458.1| ribonuclease III [Enterococcus faecium E1162]
gi|293567880|ref|ZP_06679221.1| ribonuclease III [Enterococcus faecium E1071]
gi|293570730|ref|ZP_06681780.1| ribonuclease III [Enterococcus faecium E980]
gi|294614479|ref|ZP_06694394.1| ribonuclease III [Enterococcus faecium E1636]
gi|294618515|ref|ZP_06698077.1| ribonuclease III [Enterococcus faecium E1679]
gi|294621998|ref|ZP_06701142.1| ribonuclease III [Enterococcus faecium U0317]
gi|383327459|ref|YP_005353343.1| ribonuclease III [Enterococcus faecium Aus0004]
gi|406580108|ref|ZP_11055328.1| ribonuclease III [Enterococcus sp. GMD4E]
gi|406582771|ref|ZP_11057868.1| ribonuclease III [Enterococcus sp. GMD3E]
gi|406585121|ref|ZP_11060116.1| ribonuclease III [Enterococcus sp. GMD2E]
gi|410938000|ref|ZP_11369858.1| ribonuclease III [Enterococcus sp. GMD5E]
gi|415897961|ref|ZP_11551209.1| ribonuclease III [Enterococcus faecium E4453]
gi|416134603|ref|ZP_11598307.1| ribonuclease III [Enterococcus faecium E4452]
gi|427396987|ref|ZP_18889613.1| ribonuclease 3 [Enterococcus durans FB129-CNAB-4]
gi|430820973|ref|ZP_19439591.1| ribonuclease 3 [Enterococcus faecium E0045]
gi|430823321|ref|ZP_19441893.1| ribonuclease 3 [Enterococcus faecium E0120]
gi|430826392|ref|ZP_19444576.1| ribonuclease 3 [Enterococcus faecium E0164]
gi|430828822|ref|ZP_19446936.1| ribonuclease 3 [Enterococcus faecium E0269]
gi|430831864|ref|ZP_19449912.1| ribonuclease 3 [Enterococcus faecium E0333]
gi|430834832|ref|ZP_19452834.1| ribonuclease 3 [Enterococcus faecium E0679]
gi|430836416|ref|ZP_19454397.1| ribonuclease 3 [Enterococcus faecium E0680]
gi|430839338|ref|ZP_19457279.1| ribonuclease 3 [Enterococcus faecium E0688]
gi|430842447|ref|ZP_19460362.1| ribonuclease 3 [Enterococcus faecium E1007]
gi|430843103|ref|ZP_19461005.1| ribonuclease 3 [Enterococcus faecium E1050]
gi|430850746|ref|ZP_19468503.1| ribonuclease 3 [Enterococcus faecium E1185]
gi|430853246|ref|ZP_19470976.1| ribonuclease 3 [Enterococcus faecium E1258]
gi|430855706|ref|ZP_19473412.1| ribonuclease 3 [Enterococcus faecium E1392]
gi|430858967|ref|ZP_19476585.1| ribonuclease 3 [Enterococcus faecium E1552]
gi|430861281|ref|ZP_19478870.1| ribonuclease 3 [Enterococcus faecium E1573]
gi|430866354|ref|ZP_19481631.1| ribonuclease 3 [Enterococcus faecium E1574]
gi|430892080|ref|ZP_19484486.1| ribonuclease 3 [Enterococcus faecium E1575]
gi|430952324|ref|ZP_19486367.1| ribonuclease 3 [Enterococcus faecium E1576]
gi|430999207|ref|ZP_19488175.1| ribonuclease 3 [Enterococcus faecium E1578]
gi|431036460|ref|ZP_19492230.1| ribonuclease 3 [Enterococcus faecium E1590]
gi|431081664|ref|ZP_19495754.1| ribonuclease 3 [Enterococcus faecium E1604]
gi|431118143|ref|ZP_19498097.1| ribonuclease 3 [Enterococcus faecium E1613]
gi|431209600|ref|ZP_19500961.1| ribonuclease 3 [Enterococcus faecium E1620]
gi|431234955|ref|ZP_19502978.1| ribonuclease 3 [Enterococcus faecium E1622]
gi|431255661|ref|ZP_19504784.1| ribonuclease 3 [Enterococcus faecium E1623]
gi|431303493|ref|ZP_19508340.1| ribonuclease 3 [Enterococcus faecium E1626]
gi|431380466|ref|ZP_19510847.1| ribonuclease 3 [Enterococcus faecium E1627]
gi|431438089|ref|ZP_19513252.1| ribonuclease 3 [Enterococcus faecium E1630]
gi|431506848|ref|ZP_19515674.1| ribonuclease 3 [Enterococcus faecium E1634]
gi|431545032|ref|ZP_19518673.1| ribonuclease 3 [Enterococcus faecium E1731]
gi|431592292|ref|ZP_19521528.1| ribonuclease 3 [Enterococcus faecium E1861]
gi|431695910|ref|ZP_19524804.1| ribonuclease 3 [Enterococcus faecium E1904]
gi|431739025|ref|ZP_19527965.1| ribonuclease 3 [Enterococcus faecium E1972]
gi|431740695|ref|ZP_19529606.1| ribonuclease 3 [Enterococcus faecium E2039]
gi|431744016|ref|ZP_19532889.1| ribonuclease 3 [Enterococcus faecium E2071]
gi|431747189|ref|ZP_19535988.1| ribonuclease 3 [Enterococcus faecium E2134]
gi|431749381|ref|ZP_19538122.1| ribonuclease 3 [Enterococcus faecium E2297]
gi|431753069|ref|ZP_19541747.1| ribonuclease 3 [Enterococcus faecium E2620]
gi|431755895|ref|ZP_19544537.1| ribonuclease 3 [Enterococcus faecium E2883]
gi|431757896|ref|ZP_19546525.1| ribonuclease 3 [Enterococcus faecium E3083]
gi|431760118|ref|ZP_19548722.1| ribonuclease 3 [Enterococcus faecium E3346]
gi|431763163|ref|ZP_19551716.1| ribonuclease 3 [Enterococcus faecium E3548]
gi|431764954|ref|ZP_19553480.1| ribonuclease 3 [Enterococcus faecium E4215]
gi|431768030|ref|ZP_19556471.1| ribonuclease 3 [Enterococcus faecium E1321]
gi|431769465|ref|ZP_19557875.1| ribonuclease 3 [Enterococcus faecium E1644]
gi|431773324|ref|ZP_19561650.1| ribonuclease 3 [Enterococcus faecium E2369]
gi|431776421|ref|ZP_19564683.1| ribonuclease 3 [Enterococcus faecium E2560]
gi|431779658|ref|ZP_19567850.1| ribonuclease 3 [Enterococcus faecium E4389]
gi|431782539|ref|ZP_19570672.1| ribonuclease 3 [Enterococcus faecium E6012]
gi|431784360|ref|ZP_19572402.1| ribonuclease 3 [Enterococcus faecium E6045]
gi|447911625|ref|YP_007393037.1| Ribonuclease III [Enterococcus faecium NRRL B-2354]
gi|68195400|gb|EAN09847.1| Ribonuclease III [Enterococcus faecium DO]
gi|257812998|gb|EEV41756.1| ribonuclease III [Enterococcus faecium 1,230,933]
gi|257817068|gb|EEV44396.1| ribonuclease III [Enterococcus faecium 1,231,502]
gi|257821534|gb|EEV48664.1| ribonuclease III [Enterococcus faecium 1,231,501]
gi|257824029|gb|EEV50961.1| ribonuclease III [Enterococcus faecium 1,141,733]
gi|257826988|gb|EEV53614.1| ribonuclease III [Enterococcus faecium 1,231,410]
gi|257829601|gb|EEV56208.1| ribonuclease III [Enterococcus faecium 1,231,408]
gi|257832972|gb|EEV59393.1| ribonuclease III [Enterococcus faecium Com12]
gi|257837293|gb|EEV62367.1| ribonuclease III [Enterococcus faecium Com15]
gi|260075512|gb|EEW63818.1| ribonuclease III [Enterococcus faecium C68]
gi|260078671|gb|EEW66373.1| ribonuclease III [Enterococcus faecium TC 6]
gi|289162814|gb|EFD10664.1| ribonuclease III [Enterococcus faecium D344SRF]
gi|291589465|gb|EFF21272.1| ribonuclease III [Enterococcus faecium E1071]
gi|291592656|gb|EFF24250.1| ribonuclease III [Enterococcus faecium E1636]
gi|291595215|gb|EFF26546.1| ribonuclease III [Enterococcus faecium E1679]
gi|291598425|gb|EFF29498.1| ribonuclease III [Enterococcus faecium U0317]
gi|291600902|gb|EFF31193.1| ribonuclease III [Enterococcus faecium E1039]
gi|291605117|gb|EFF34584.1| ribonuclease III [Enterococcus faecium E1162]
gi|291609202|gb|EFF38474.1| ribonuclease III [Enterococcus faecium E980]
gi|292642015|gb|EFF60181.1| ribonuclease III [Enterococcus faecium PC4.1]
gi|364090286|gb|EHM32892.1| ribonuclease III [Enterococcus faecium E4453]
gi|364092476|gb|EHM34848.1| ribonuclease III [Enterococcus faecium E4452]
gi|378937153|gb|AFC62225.1| ribonuclease III [Enterococcus faecium Aus0004]
gi|404454612|gb|EKA01534.1| ribonuclease III [Enterococcus sp. GMD4E]
gi|404457508|gb|EKA04045.1| ribonuclease III [Enterococcus sp. GMD3E]
gi|404463103|gb|EKA08801.1| ribonuclease III [Enterococcus sp. GMD2E]
gi|410733639|gb|EKQ75562.1| ribonuclease III [Enterococcus sp. GMD5E]
gi|425722734|gb|EKU85628.1| ribonuclease 3 [Enterococcus durans FB129-CNAB-4]
gi|430438958|gb|ELA49349.1| ribonuclease 3 [Enterococcus faecium E0045]
gi|430442419|gb|ELA52464.1| ribonuclease 3 [Enterococcus faecium E0120]
gi|430445116|gb|ELA54900.1| ribonuclease 3 [Enterococcus faecium E0164]
gi|430480505|gb|ELA57679.1| ribonuclease 3 [Enterococcus faecium E0333]
gi|430482717|gb|ELA59822.1| ribonuclease 3 [Enterococcus faecium E0269]
gi|430484901|gb|ELA61848.1| ribonuclease 3 [Enterococcus faecium E0679]
gi|430488543|gb|ELA65214.1| ribonuclease 3 [Enterococcus faecium E0680]
gi|430490796|gb|ELA67292.1| ribonuclease 3 [Enterococcus faecium E0688]
gi|430493528|gb|ELA69831.1| ribonuclease 3 [Enterococcus faecium E1007]
gi|430498157|gb|ELA74165.1| ribonuclease 3 [Enterococcus faecium E1050]
gi|430535105|gb|ELA75528.1| ribonuclease 3 [Enterococcus faecium E1185]
gi|430541068|gb|ELA81245.1| ribonuclease 3 [Enterococcus faecium E1258]
gi|430544486|gb|ELA84515.1| ribonuclease 3 [Enterococcus faecium E1552]
gi|430546248|gb|ELA86210.1| ribonuclease 3 [Enterococcus faecium E1392]
gi|430550314|gb|ELA90111.1| ribonuclease 3 [Enterococcus faecium E1573]
gi|430551582|gb|ELA91333.1| ribonuclease 3 [Enterococcus faecium E1574]
gi|430555745|gb|ELA95280.1| ribonuclease 3 [Enterococcus faecium E1575]
gi|430557459|gb|ELA96918.1| ribonuclease 3 [Enterococcus faecium E1576]
gi|430563000|gb|ELB02231.1| ribonuclease 3 [Enterococcus faecium E1590]
gi|430563314|gb|ELB02543.1| ribonuclease 3 [Enterococcus faecium E1578]
gi|430565596|gb|ELB04742.1| ribonuclease 3 [Enterococcus faecium E1604]
gi|430568100|gb|ELB07157.1| ribonuclease 3 [Enterococcus faecium E1613]
gi|430570632|gb|ELB09578.1| ribonuclease 3 [Enterococcus faecium E1620]
gi|430572815|gb|ELB11651.1| ribonuclease 3 [Enterococcus faecium E1622]
gi|430577859|gb|ELB16439.1| ribonuclease 3 [Enterococcus faecium E1623]
gi|430580134|gb|ELB18614.1| ribonuclease 3 [Enterococcus faecium E1626]
gi|430582334|gb|ELB20761.1| ribonuclease 3 [Enterococcus faecium E1627]
gi|430586924|gb|ELB25166.1| ribonuclease 3 [Enterococcus faecium E1630]
gi|430587235|gb|ELB25468.1| ribonuclease 3 [Enterococcus faecium E1634]
gi|430591917|gb|ELB29944.1| ribonuclease 3 [Enterococcus faecium E1861]
gi|430592080|gb|ELB30102.1| ribonuclease 3 [Enterococcus faecium E1731]
gi|430596568|gb|ELB34392.1| ribonuclease 3 [Enterococcus faecium E1972]
gi|430597863|gb|ELB35645.1| ribonuclease 3 [Enterococcus faecium E1904]
gi|430602778|gb|ELB40328.1| ribonuclease 3 [Enterococcus faecium E2039]
gi|430606079|gb|ELB43451.1| ribonuclease 3 [Enterococcus faecium E2071]
gi|430606718|gb|ELB44056.1| ribonuclease 3 [Enterococcus faecium E2134]
gi|430611510|gb|ELB48591.1| ribonuclease 3 [Enterococcus faecium E2297]
gi|430612817|gb|ELB49848.1| ribonuclease 3 [Enterococcus faecium E2620]
gi|430616010|gb|ELB52935.1| ribonuclease 3 [Enterococcus faecium E2883]
gi|430618401|gb|ELB55248.1| ribonuclease 3 [Enterococcus faecium E3083]
gi|430622857|gb|ELB59567.1| ribonuclease 3 [Enterococcus faecium E3548]
gi|430625387|gb|ELB62027.1| ribonuclease 3 [Enterococcus faecium E3346]
gi|430629725|gb|ELB66114.1| ribonuclease 3 [Enterococcus faecium E4215]
gi|430629759|gb|ELB66147.1| ribonuclease 3 [Enterococcus faecium E1321]
gi|430636747|gb|ELB72807.1| ribonuclease 3 [Enterococcus faecium E2369]
gi|430637040|gb|ELB73084.1| ribonuclease 3 [Enterococcus faecium E1644]
gi|430640972|gb|ELB76793.1| ribonuclease 3 [Enterococcus faecium E2560]
gi|430641420|gb|ELB77222.1| ribonuclease 3 [Enterococcus faecium E4389]
gi|430647176|gb|ELB82624.1| ribonuclease 3 [Enterococcus faecium E6012]
gi|430649934|gb|ELB85301.1| ribonuclease 3 [Enterococcus faecium E6045]
gi|445187334|gb|AGE28976.1| Ribonuclease III [Enterococcus faecium NRRL B-2354]
Length = 228
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
L++ F + LL +A THSS+ E +N L LG V++ VS L
Sbjct: 9 LKENYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYP 68
Query: 98 DISPKDLNR------RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS---TVPAVVCGA 148
+ L + R S C D Q V+ + NS T PA++C
Sbjct: 69 HLPEGKLTKTRAAIVREDSLSKFAKECHFD------QYVLLGKGEENSGGRTRPALLCDL 122
Query: 149 FRAIFGAIAVDTG 161
F A GA+ +D G
Sbjct: 123 FEAFLGALYLDQG 135
>gi|418020620|ref|ZP_12659862.1| ribonuclease III [Candidatus Regiella insecticola R5.15]
gi|347604028|gb|EGY28752.1| ribonuclease III [Candidatus Regiella insecticola R5.15]
Length = 235
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 11/119 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
++ L+ ++GY FK LL +A+TH S S +N L LG +++ ++ L + DI+
Sbjct: 6 IKKLETRLGYAFKQRALLVQALTHRSASRIHNERLEFLGDAILNFFIAKALYQRFSDINE 65
Query: 102 KDLNRR----VSETSNVEISCAVD---GMHLGLQKVVR-VSPKTN---STVPAVVCGAF 149
D++R V + EI+ D +HLG ++ SP+ + TV A++ G F
Sbjct: 66 GDMSRMRATLVRGKTLAEIAHEFDLGEFLHLGKGELKNGKSPRESILADTVEALIGGIF 124
>gi|439871|gb|AAA69690.1| ribonuclease [Coxiella burnetii]
Length = 233
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L L +++G+ F ++ LL+ A+TH S +NN L LG V+ ++ L +
Sbjct: 4 LNKLMERLGHQFNNLELLKIALTHCSSGADNNERLEFLGDSVLGFIIASELYQRRPQARE 63
Query: 102 KDLNR-RVSETSNVEISCAVD--GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAV 158
DL+R R S + E++ G++ LQ V +++ A I GAI +
Sbjct: 64 GDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALETIVGAIYI 123
Query: 159 DTG 161
D G
Sbjct: 124 DAG 126
>gi|421714918|ref|ZP_16154236.1| ribonuclease III [Helicobacter pylori R036d]
gi|407215772|gb|EKE85610.1| ribonuclease III [Helicobacter pylori R036d]
Length = 239
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYV 83
R+ N ++P+ T L+K +GY+FK LL +A+TH S NN L LG V
Sbjct: 5 RSQNSPYITPNNPYTT----LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAV 60
Query: 84 IDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN- 138
+ + L +K L++ VS +++ A+ LQ +RVS
Sbjct: 61 LGLVIGELLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEI 115
Query: 139 ---STVPAVVCGAFRAIFGAIAVDTG 161
P+++ AF A+ + ++ G
Sbjct: 116 SNGREKPSILSSAFEALMAGVYLEAG 141
>gi|254779351|ref|YP_003057456.1| ribonuclease III [Helicobacter pylori B38]
gi|254001262|emb|CAX29239.1| Ribonuclease III (RNase III) [Helicobacter pylori B38]
Length = 232
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 35 SSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLL 93
+SP+ T L+K +GY+FK LL +A+TH S NN L LG V+ + L
Sbjct: 8 NSPYTT----LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLY 63
Query: 94 NKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVV 145
+K L++ VS +++ A+ LQ +RVS P+++
Sbjct: 64 HKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISNGREKPSIL 118
Query: 146 CGAFRAIFGAIAVDTG 161
AF A+ + ++ G
Sbjct: 119 SSAFEALMAGVYLEAG 134
>gi|167037696|ref|YP_001665274.1| ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|320116111|ref|YP_004186270.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|326389510|ref|ZP_08211077.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200]
gi|345017777|ref|YP_004820130.1| ribonuclease 3 [Thermoanaerobacter wiegelii Rt8.B1]
gi|392940879|ref|ZP_10306523.1| ribonuclease III [Thermoanaerobacter siderophilus SR4]
gi|166856530|gb|ABY94938.1| Ribonuclease III [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319929202|gb|ADV79887.1| ribonuclease III [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|325994515|gb|EGD52940.1| ribonuclease III [Thermoanaerobacter ethanolicus JW 200]
gi|344033120|gb|AEM78846.1| Ribonuclease 3 [Thermoanaerobacter wiegelii Rt8.B1]
gi|392292629|gb|EIW01073.1| ribonuclease III [Thermoanaerobacter siderophilus SR4]
Length = 246
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNK 95
L L+K+I Y+FK LL A+THSS++ E +N L LG V+ +S L
Sbjct: 20 LSELEKRINYSFKDKNLLIEALTHSSWAHEGKNSKISNERLEFLGDSVLSLVISEYLYKN 79
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRA 151
D+ L++ +E E S A + L +R+ T +++ A A
Sbjct: 80 RKDLEEGSLSKYRAEIV-CEPSLARCAREIELGNFLRIGKGEELTGGRERDSILADAMEA 138
Query: 152 IFGAIAVDTG 161
I A+ +D G
Sbjct: 139 ILAAVYLDGG 148
>gi|99082399|ref|YP_614553.1| RNAse III [Ruegeria sp. TM1040]
gi|99038679|gb|ABF65291.1| RNAse III [Ruegeria sp. TM1040]
Length = 242
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEEN---NRALGILGGYVIDTSVSLRLLNKDIDISP 101
Q ++G+ F S LL RA+TH S S N N+ L LG V+ ++ LL D D +
Sbjct: 24 FQARLGHEFSSPELLIRALTHPSVSSPNRQDNQRLEFLGDRVLGLVMATALLEHDKDATE 83
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGAIA 157
L R + E +CA + L V+++ A++ A A+ A+
Sbjct: 84 GQLAPRFNALVRKE-TCADVARQIDLGAVLKLGRSEMLSGGRRKQALLGDAMEAVIAAVY 142
Query: 158 VDTGKCDDAGDVFLRVHSGEVG 179
D G + A V LR+ VG
Sbjct: 143 RDAG-FEAAQSVILRLWGKRVG 163
>gi|421716750|ref|ZP_16156059.1| ribonuclease III [Helicobacter pylori R037c]
gi|407219971|gb|EKE89782.1| ribonuclease III [Helicobacter pylori R037c]
Length = 239
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 35 SSPFAT---ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYITPNSSYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|319784504|ref|YP_004143980.1| ribonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317170392|gb|ADV13930.1| ribonuclease III [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 251
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSF--SEENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
++ + GY FK I LL A+THSS + NN+ L LG V+ V+ L K D
Sbjct: 15 VKAKTGYVFKDIRLLETALTHSSAVKAATNNQRLEFLGDRVLGLVVADMLFEKFPDAPEG 74
Query: 103 DLNRRVSETSNVEISCAVDGMHLGLQKVVRVSP----KTNSTVPAVVCGAFRAIFGAIAV 158
++ R + + +C+ G+ + L+ +VR ++ + + A A+ A+ V
Sbjct: 75 EIAPRFNALVDAR-TCSEIGIEMQLEDLVRADSALKMRSRGSGGNYLADAVEALIAAVYV 133
Query: 159 DTG 161
D G
Sbjct: 134 DGG 136
>gi|392552209|ref|ZP_10299346.1| RNase III, ds RNA [Pseudoalteromonas spongiae UST010723-006]
Length = 225
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 47 KQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNR 106
K+IGY+F + LL +AMTH S+ +N L LG ++ ++ L ++ DL+R
Sbjct: 10 KKIGYSFNDVRLLEQAMTHRSYRGAHNERLEFLGDSILSFVIADALYHQFPKAREGDLSR 69
Query: 107 RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDT 160
S + + A G+ L +R+ P + + + A AI GA+ +D+
Sbjct: 70 MRSTLVRGQ-TLAEFGVEFELGDFLRLGPGELKSGGYRRESTLADAVEAIIGAVFLDS 126
>gi|114797101|ref|YP_759604.1| ribonuclease III [Hyphomonas neptunium ATCC 15444]
gi|114737275|gb|ABI75400.1| ribonuclease III [Hyphomonas neptunium ATCC 15444]
Length = 234
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 18/106 (16%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLL 93
AL+ Q+ IG+ FK +L RA+TH S +N+ L LG V++ ++ RL+
Sbjct: 9 ALKEAQEIIGFKFKDAAILERALTHPSAIPPSGDTVKLSNQRLEFLGDRVLNLIIAERLI 68
Query: 94 NK-----DIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVS 134
+ + D++P+ LNR V + +CA LGLQ+ + +S
Sbjct: 69 ERRQSDSEGDLAPR-LNRLVKKG-----ACAEAMRFLGLQRFILLS 108
>gi|424862970|ref|ZP_18286883.1| ribonuclease III [SAR86 cluster bacterium SAR86A]
gi|400757591|gb|EJP71802.1| ribonuclease III [SAR86 cluster bacterium SAR86A]
Length = 216
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTH-SSFSEENNRALGILGGYVIDTSVSLRLLNK 95
+L+ L K+IGY F I LL A+TH S+ S+ NN L LG ++ T VS L K
Sbjct: 2 SLDDLSKKIGYEFADIKLLELAITHKSADSKSNNERLEFLGDAILSTVVSEYLYTK 57
>gi|384920629|ref|ZP_10020635.1| ribonuclease III [Citreicella sp. 357]
gi|384465477|gb|EIE50016.1| ribonuclease III [Citreicella sp. 357]
Length = 227
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 13/145 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFS---EENNRALGILGGYVIDTSVSLRLLNKDID--- 98
L++++G+ F + LRRA+THSS S E+N+ L LG V+ ++ LL D
Sbjct: 10 LEERLGHRFDTPDRLRRALTHSSMSSPGREDNQRLEFLGDRVLGLVMAEALLGSDRHASE 69
Query: 99 --ISPKDLNRRVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGA 155
++P+ N V + + E++ +D G L L + +S A++ A A+ A
Sbjct: 70 GLLAPR-FNALVRKETCAEVAREIDLGAALKLGRSEMMSGGRRKM--ALLGDAMEAVIAA 126
Query: 156 IAVDTGKCDDAGDVFLRVHSGEVGK 180
+ +D G D A + LR+ + +
Sbjct: 127 VYLDAG-FDTAKAMILRLWGNRIAQ 150
>gi|320104374|ref|YP_004179965.1| RNAse III [Isosphaera pallida ATCC 43644]
gi|319751656|gb|ADV63416.1| RNAse III [Isosphaera pallida ATCC 43644]
Length = 238
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSS------FSEENNRALG--ILGGYVIDTSVSLRLL 93
L + ++ IG++F+ GLLR A+THSS S E LG +LG V DT L
Sbjct: 10 LASCERVIGHSFQDRGLLRAALTHSSRAVHPLASNERLEFLGDSVLGMIVCDTLFHLFPE 69
Query: 94 NKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT--NSTVPA-VVCGAFR 150
K+ D++ R+ +C LGLQ + + +S PA + F
Sbjct: 70 AKEGDLT------RIKSVVVSRQTCTKIARKLGLQNYLLLGKGMGPSSQAPASTLANVFE 123
Query: 151 AIFGAIAVDTG 161
++ GAI +D+G
Sbjct: 124 SVVGAIYLDSG 134
>gi|149910155|ref|ZP_01898801.1| ribonuclease III [Moritella sp. PE36]
gi|149806741|gb|EDM66705.1| ribonuclease III [Moritella sp. PE36]
Length = 223
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
LE LQ +GY ++ GLL++A+TH S ++N L LG V+ +S L + ++
Sbjct: 5 LERLQTVLGYQYQDAGLLQQALTHRSAYYKHNERLEFLGDSVLGFIISDALFRQFPEVPE 64
Query: 102 KDLNR 106
DL+R
Sbjct: 65 GDLSR 69
>gi|422013539|ref|ZP_16360162.1| ribonuclease III [Providencia burhodogranariea DSM 19968]
gi|414102997|gb|EKT64581.1| ribonuclease III [Providencia burhodogranariea DSM 19968]
Length = 226
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
+ LE LQ++IGY F LL +A+TH S S ++N L LG ++ ++ L ++ +
Sbjct: 4 SLLEQLQRKIGYKFNQYDLLIQALTHRSASSKHNERLEFLGDSILSFVIANDLYHRFPKV 63
Query: 100 SPKDLNR 106
D++R
Sbjct: 64 DEGDMSR 70
>gi|313884921|ref|ZP_07818673.1| ribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
gi|312619612|gb|EFR31049.1| ribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
Length = 233
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 12/130 (9%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNK 95
+ +QK G TF +I +L+ A H+S++ E +N L LG V++ S L N
Sbjct: 6 DIIQKNTGITFTNIEILQTAFCHTSYANEHAKEKLKDNERLEFLGDAVLELITSDFLFNT 65
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRA 151
D L R ++ E S A+ L +++++ ++ ++V AF A
Sbjct: 66 YPDKPEGQLTRMRAQLVK-EPSLALVARKYQLDQLIQLGKGEEASGGRFRDSIVSDAFEA 124
Query: 152 IFGAIAVDTG 161
GAI +D G
Sbjct: 125 FLGAIYLDQG 134
>gi|28899346|ref|NP_798951.1| ribonuclease III [Vibrio parahaemolyticus RIMD 2210633]
gi|153839958|ref|ZP_01992625.1| ribonuclease III [Vibrio parahaemolyticus AQ3810]
gi|260365941|ref|ZP_05778431.1| ribonuclease III [Vibrio parahaemolyticus K5030]
gi|260878963|ref|ZP_05891318.1| ribonuclease III [Vibrio parahaemolyticus AN-5034]
gi|260898320|ref|ZP_05906816.1| ribonuclease III [Vibrio parahaemolyticus Peru-466]
gi|417318931|ref|ZP_12105489.1| ribonuclease III [Vibrio parahaemolyticus 10329]
gi|433658647|ref|YP_007276026.1| Ribonuclease III [Vibrio parahaemolyticus BB22OP]
gi|31076860|sp|Q87LN9.1|RNC_VIBPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|28807582|dbj|BAC60835.1| ribonuclease III [Vibrio parahaemolyticus RIMD 2210633]
gi|149746517|gb|EDM57506.1| ribonuclease III [Vibrio parahaemolyticus AQ3810]
gi|308085245|gb|EFO34940.1| ribonuclease III [Vibrio parahaemolyticus Peru-466]
gi|308090440|gb|EFO40135.1| ribonuclease III [Vibrio parahaemolyticus AN-5034]
gi|308113210|gb|EFO50750.1| ribonuclease III [Vibrio parahaemolyticus K5030]
gi|328474121|gb|EGF44926.1| ribonuclease III [Vibrio parahaemolyticus 10329]
gi|432509335|gb|AGB10852.1| Ribonuclease III [Vibrio parahaemolyticus BB22OP]
Length = 225
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
+ ++ L++++GY FK GL+ A+TH S + ++N L LG ++ ++ L ++ +
Sbjct: 3 SPIDKLERKLGYQFKDAGLINLALTHRSANSKHNERLEFLGDSILSFVIADDLYHRFPKV 62
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGA 155
+ D++ R+ T + A G L +++ P + +++ A AI GA
Sbjct: 63 NEGDMS-RMRATLVRGHTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAIIGA 121
Query: 156 IAVDT 160
I +D+
Sbjct: 122 IYLDS 126
>gi|408381554|ref|ZP_11179103.1| ribonuclease 3 [Methanobacterium formicicum DSM 3637]
gi|407816021|gb|EKF86584.1| ribonuclease 3 [Methanobacterium formicicum DSM 3637]
Length = 217
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 54 KSIGLLRRAMTHSSFSEENN-----RALGILGGYVIDTSVSLRLLNKDIDISPKDLNR-R 107
K++ L A H S+S ENN L LG V+D VS L D D+ +L R R
Sbjct: 12 KNLHLYDIAFLHESYSYENNLNECYERLEFLGDAVLDLVVSEFLYESDQDLDEGELTRLR 71
Query: 108 VSETSNVEISCAVDGMHLGLQKVVRV---SPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
+ N + M +GL K V++ + + + +V F A GA+ +D G
Sbjct: 72 ANYVCNKALYTY--SMDVGLNKYVKLGAGAELSRRELHSVTGDVFEAFIGALYLDLG 126
>gi|385215924|ref|YP_005775881.1| ribonuclease III [Helicobacter pylori F32]
gi|317180453|dbj|BAJ58239.1| ribonuclease III [Helicobacter pylori F32]
Length = 238
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 24/142 (16%)
Query: 35 SSPFAT--ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLR 91
+SP+ T + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGEL 67
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAVDGMH--------LGLQKVVRVSPKTN----S 139
L +K L++ + ++ H + LQ +RVS
Sbjct: 68 LYHKFYQYDEGKLSK---------LRASIVSAHGFTKLAKVIALQDYLRVSSSEEISKGR 118
Query: 140 TVPAVVCGAFRAIFGAIAVDTG 161
P+++ AF A+ + ++ G
Sbjct: 119 EKPSILSSAFEALMAGVYLEAG 140
>gi|408418327|ref|YP_006759741.1| ribonuclease III Rnc [Desulfobacula toluolica Tol2]
gi|405105540|emb|CCK79037.1| Rnc: ribonuclease III [Desulfobacula toluolica Tol2]
Length = 525
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRL 92
T + L+K IGY FK I L A+ H S+ EN N L LG V+ + L
Sbjct: 296 TLVSILEKNIGYVFKDISFLNTALCHRSYLNENQDSCTGDNERLEFLGDAVLGLCIGQLL 355
Query: 93 LNKDIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCG 147
+ K +L++ VSE + +++ +D G + L K +S + +++
Sbjct: 356 MEKSPSKKEGELSKLRSNLVSEPALADMARCIDLGRFIRLGKGEALSRGFDKN--SILSD 413
Query: 148 AFRAIFGAIAVDTG 161
AF A+ A+ +D G
Sbjct: 414 AFEAVIAAVYLDGG 427
>gi|395785987|ref|ZP_10465715.1| ribonuclease III [Bartonella tamiae Th239]
gi|423717119|ref|ZP_17691309.1| ribonuclease III [Bartonella tamiae Th307]
gi|395424445|gb|EJF90632.1| ribonuclease III [Bartonella tamiae Th239]
gi|395427908|gb|EJF93991.1| ribonuclease III [Bartonella tamiae Th307]
Length = 238
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSF---SEENNRALGILGGYVIDTSVSLRLLNKDID 98
+E L+K G+ FK+I L RA+TH+S S+ N L LG V+ VS L D
Sbjct: 6 IEKLEKSTGHHFKNILRLERALTHASLQDASKGNYERLEFLGDRVLGLLVSEALCEIFSD 65
Query: 99 ISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFG 154
S +L+ R++ N E +CA M + L +++ V + + + + A+
Sbjct: 66 ASEGELSIRLNGLVNAE-TCAEIAMEIDLPEMIYVGAEMKNLDDRRLANIHADVVEALIA 124
Query: 155 AIAVDTG 161
I +D G
Sbjct: 125 VIYLDGG 131
>gi|295100361|emb|CBK97906.1| RNAse III [Faecalibacterium prausnitzii L2-6]
Length = 224
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE------NNRALGILGGYVIDTSVSLRLLNK 95
LET+ IGY FK LL A+TH+S++ E +N L LG V+ + L +
Sbjct: 5 LETI---IGYKFKHPELLETALTHTSYANETRPPVKHNERLEFLGDSVLQIVSADYLFHA 61
Query: 96 DIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAFR 150
D DL R VSE + + + ++ G +L L + T P+VV AF
Sbjct: 62 YADRPEGDLTRIRSSLVSEGALFQFAQEINLGDYLRLGRGEEHC--GGRTRPSVVSDAFE 119
Query: 151 AIFGAIAVDTG 161
A+ A+ +D G
Sbjct: 120 ALIAALYLDGG 130
>gi|422009404|ref|ZP_16356387.1| ribonuclease III [Providencia rettgeri Dmel1]
gi|414093222|gb|EKT54894.1| ribonuclease III [Providencia rettgeri Dmel1]
Length = 226
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
+ LE LQ+++GY FK LL +A+TH S S ++N L LG ++ ++ L ++ +
Sbjct: 4 SLLEKLQRKLGYQFKQNELLIQALTHRSASSKHNERLEFLGDSILSFVIANDLYHRFPKV 63
Query: 100 SPKDLNR 106
D++R
Sbjct: 64 DEGDMSR 70
>gi|358451275|ref|ZP_09161709.1| ribonuclease III [Marinobacter manganoxydans MnI7-9]
gi|385330525|ref|YP_005884476.1| ribonuclease 3 [Marinobacter adhaerens HP15]
gi|311693675|gb|ADP96548.1| ribonuclease 3 [Marinobacter adhaerens HP15]
gi|357224508|gb|EHJ03039.1| ribonuclease III [Marinobacter manganoxydans MnI7-9]
Length = 229
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVS 89
L+ LQ++IGY FKS L A+TH S+ +NN L LG +++ ++
Sbjct: 7 LDQLQRRIGYQFKSPERLLLALTHRSYGNQNNERLEFLGDSIVNMVIA 54
>gi|414162328|ref|ZP_11418575.1| ribonuclease 3 [Afipia felis ATCC 53690]
gi|410880108|gb|EKS27948.1| ribonuclease 3 [Afipia felis ATCC 53690]
Length = 290
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 26 AANDQRFKTSSPFATAL-ETLQKQIGYTFKSIGLLRRAMTH-SSFSEENNRA-----LGI 78
AA + K P A AL ++++IG+TFK+ LL+ A+TH S+ NR L
Sbjct: 45 AAEGKPKKPRRPSAKALVREIEERIGHTFKNPALLKTALTHVSALKPSQNRTDSYQRLEF 104
Query: 79 LGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVR------ 132
LG +V+ VS L ++++R+++ E +C LGL + ++
Sbjct: 105 LGDHVLGLIVSDMLYGAFPKADEGEMSKRLADLVRKE-ACVDVAKSLGLHENIKLGTVGA 163
Query: 133 -VSPKTNSTVPAVVCGAFRAIFGAIAVDTG 161
V + +++ +C A+ GAI +D G
Sbjct: 164 GVGARLRNSIVGDIC---EAVIGAIFLDGG 190
>gi|298528053|ref|ZP_07015457.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
gi|298511705|gb|EFI35607.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
Length = 232
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE----ENNRALGILGGYVIDTSVSLRLLNKDI 97
L+ LQ +IGY ++ LL RA+THSS++ E+N L LG V++ +S L +
Sbjct: 2 LDELQDKIGYRYQDPELLVRALTHSSYANERHMEHNERLEFLGDAVLELCISNVLFFRFP 61
Query: 98 DISPKDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFR 150
L R VSE + ++ ++ D + LG + ++ +S V+
Sbjct: 62 RAPEGHLTRLRAALVSEPTLARLARSLTLGDYIFLGRGEELQGGRDRDS----VLADTLE 117
Query: 151 AIFGAIAVDTG 161
AI GA+ +D+G
Sbjct: 118 AILGAVYLDSG 128
>gi|46579851|ref|YP_010659.1| ribonuclease III [Desulfovibrio vulgaris str. Hildenborough]
gi|81404810|sp|Q72C44.1|RNC_DESVH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|46449267|gb|AAS95918.1| ribonuclease III [Desulfovibrio vulgaris str. Hildenborough]
Length = 253
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE------ENNRALGILGGYVIDTSVSLRLLNK 95
++ LQK IG+ F + LL AMTHSS++ E+N L LG V++ VS L +
Sbjct: 29 VDELQKTIGHRFGDMELLLTAMTHSSWANEQAVPVEHNERLEFLGDAVLELCVSEELFRR 88
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGM--HLGLQKVVRVSPKTNST----VPAVVCGAF 149
DL R S + +++G+ L L +R+ S +++ A
Sbjct: 89 FPSAREGDLTRMRSRLVS---KPSLEGVARELRLDMSLRLGKGEESQGGRERGSLLSDAL 145
Query: 150 RAIFGAIAVDTG 161
A+ GA+ +D G
Sbjct: 146 EAMLGAVFLDAG 157
>gi|421710165|ref|ZP_16149522.1| ribonuclease III [Helicobacter pylori R018c]
gi|421723442|ref|ZP_16162696.1| ribonuclease III [Helicobacter pylori R056a]
gi|407210356|gb|EKE80235.1| ribonuclease III [Helicobacter pylori R018c]
gi|407224465|gb|EKE94241.1| ribonuclease III [Helicobacter pylori R056a]
Length = 239
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYV 83
R+ N ++P+ T L+K +GY+FK LL +A+TH S NN L LG V
Sbjct: 5 RSQNSPYITPNNPYTT----LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAV 60
Query: 84 IDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN- 138
+ + L +K L++ VS +++ A+ LQ +RVS
Sbjct: 61 LGLVIGELLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEI 115
Query: 139 ---STVPAVVCGAFRAIFGAIAVDTG 161
P+++ AF A+ + ++ G
Sbjct: 116 SNGREKPSILSSAFEALMAGVYLEAG 141
>gi|242240203|ref|YP_002988384.1| ribonuclease III [Dickeya dadantii Ech703]
gi|242132260|gb|ACS86562.1| ribonuclease III [Dickeya dadantii Ech703]
Length = 226
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQK++GYTF+ LL +A+TH S S ++N L LG ++ ++ L ++ + D+
Sbjct: 9 LQKKLGYTFQQYDLLLQALTHRSASSKHNERLEFLGDSILSFVIANALYHRFPRVDEGDM 68
Query: 105 NR 106
+R
Sbjct: 69 SR 70
>gi|403745343|ref|ZP_10954281.1| Ribonuclease III [Alicyclobacillus hesperidum URH17-3-68]
gi|403121571|gb|EJY55864.1| Ribonuclease III [Alicyclobacillus hesperidum URH17-3-68]
Length = 241
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA-------LGILGGYVIDTSVSLRL 92
T + LQ + + F + LL++A TH+S+ E+ +A L LG V++ +S L
Sbjct: 3 TKWDQLQDIVDFRFTDLNLLKQAFTHASYRNEHRKAHVEDNERLEFLGDAVLELIISDFL 62
Query: 93 LNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGA 148
+ + +L R + E S V L ++ +R+ + PA++
Sbjct: 63 YHTYPRLPEGELTR-MRAAIVCEPSLVVFARRLSFEQFIRLGRGEERSGGRSRPALLADV 121
Query: 149 FRAIFGAIAVDTG 161
F A GA+ +D G
Sbjct: 122 FEAFLGALYIDQG 134
>gi|420484013|ref|ZP_14982639.1| ribonuclease III [Helicobacter pylori Hp P-3]
gi|420514282|ref|ZP_15012755.1| ribonuclease III [Helicobacter pylori Hp P-3b]
gi|420519618|ref|ZP_15018060.1| ribonuclease III [Helicobacter pylori Hp H-5b]
gi|393100880|gb|EJC01453.1| ribonuclease III [Helicobacter pylori Hp P-3]
gi|393126682|gb|EJC27130.1| ribonuclease III [Helicobacter pylori Hp H-5b]
gi|393158745|gb|EJC59005.1| ribonuclease III [Helicobacter pylori Hp P-3b]
Length = 239
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPDNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|421256197|ref|ZP_15710334.1| ribonuclease III [Pasteurella multocida subsp. multocida str.
Anand1_cattle]
gi|401701432|gb|EJS91934.1| ribonuclease III [Pasteurella multocida subsp. multocida str.
Anand1_cattle]
Length = 87
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ+QIGY F LL++A+TH S + ++N L LG +++ ++ L ++ +
Sbjct: 5 LDRLQRQIGYQFNQPALLKQALTHRSAAVKHNERLEFLGDAILNFIIAEALYHQFPKCNE 64
Query: 102 KDLNR 106
+L+R
Sbjct: 65 GELSR 69
>gi|420474166|ref|ZP_14972842.1| ribonuclease III [Helicobacter pylori Hp H-19]
gi|393089302|gb|EJB89942.1| ribonuclease III [Helicobacter pylori Hp H-19]
Length = 239
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPDNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|347542378|ref|YP_004857014.1| ribonuclease III [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346985413|dbj|BAK81088.1| ribonuclease III [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 227
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 10/131 (7%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-----NRALGILGGYVIDTSVSLRLLN 94
T ++ Q+ IG FK+I +L A+THSS++ E N L LG V+ ++ L
Sbjct: 4 TLIDKFQEIIGVKFKNIDILNLALTHSSYANERGLTEYNERLEFLGDSVLQLCITEYLYK 63
Query: 95 KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVVCGAFR 150
D + DL R+ + E S G L + +++S T + + A
Sbjct: 64 NCKDNNEGDLTRKRASIV-CEASLYKVGEKWKLGEFIKLSKGEKLSGGKTRISTIADAVE 122
Query: 151 AIFGAIAVDTG 161
A+ A+ +D+G
Sbjct: 123 AVIAAVYLDSG 133
>gi|314936605|ref|ZP_07843952.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80]
gi|313655224|gb|EFS18969.1| ribonuclease III [Staphylococcus hominis subsp. hominis C80]
Length = 243
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSL 90
F + K +G ++ + + ++A +HSSF + +N L LG V++ +VS
Sbjct: 12 FQYQFDKKMKMLGLSYTHVDVYQQAFSHSSFINDFNMDRLAHNERLEFLGDAVLELTVSR 71
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L + + T E S + + L +++ + KT T P++V
Sbjct: 72 YLFDKYPNLPEGNLTK-MRATIVCEPSLVIFANKIELNQLILLGKGEEKTGGRTRPSLVS 130
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 131 DAFEAFIGALYLDQG 145
>gi|420416986|ref|ZP_14916092.1| ribonuclease III [Helicobacter pylori NQ4044]
gi|393035258|gb|EJB36304.1| ribonuclease III [Helicobacter pylori NQ4044]
Length = 239
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|343493991|ref|ZP_08732275.1| ribonuclease III [Vibrio nigripulchritudo ATCC 27043]
gi|342825632|gb|EGU60109.1| ribonuclease III [Vibrio nigripulchritudo ATCC 27043]
Length = 225
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDI 99
T + L+KQ+GY F+ L+ A+TH S + ++N L LG ++ ++ L ++ +
Sbjct: 3 TPISKLEKQLGYQFQDAELIHLALTHRSANSKHNERLEFLGDSILSFVIADDLYHRFPKV 62
Query: 100 SPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGA 155
+ D++ R+ T + A G L + +++ P + +++ A AI GA
Sbjct: 63 NEGDMS-RMRATLVRGNTLAELGREFDLGEYLKLGPGELKSGGFRRDSILADAVEAIIGA 121
Query: 156 IAVDT 160
I +D+
Sbjct: 122 IYLDS 126
>gi|321454554|gb|EFX65720.1| hypothetical protein DAPPUDRAFT_117031 [Daphnia pulex]
Length = 322
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 18/151 (11%)
Query: 28 NDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE--------ENNRALG-- 77
N Q +P + +L L ++IGY F++ LL RAMTHS+ ++ EN LG
Sbjct: 56 NSQGTLVPNPTSFSLTALPEKIGYKFRNKNLLGRAMTHSTANQTKCPSQDGENFEVLGDV 115
Query: 78 ILGGYV----IDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRV 133
LG + ++ +V L LL +D++P + N+ I+C L +
Sbjct: 116 ALGNFFAMARVNHTVVLELL---LDLNP-NYNQGQLSLLKSAITCNDTFADLVIIPSAEG 171
Query: 134 SPKTNSTVPAVVCGAFRAIFGAIAVDTGKCD 164
P + AF A+ GA+ +D + D
Sbjct: 172 YRANEIDYPEIYADAFEALIGALRIDCERED 202
>gi|420430452|ref|ZP_14929480.1| ribonuclease III [Helicobacter pylori Hp A-20]
gi|420440432|ref|ZP_14939388.1| ribonuclease III [Helicobacter pylori Hp H-30]
gi|420482233|ref|ZP_14980870.1| ribonuclease III [Helicobacter pylori Hp P-2]
gi|420512656|ref|ZP_15011139.1| ribonuclease III [Helicobacter pylori Hp P-2b]
gi|393047149|gb|EJB48124.1| ribonuclease III [Helicobacter pylori Hp A-20]
gi|393056659|gb|EJB57570.1| ribonuclease III [Helicobacter pylori Hp H-30]
gi|393099467|gb|EJC00049.1| ribonuclease III [Helicobacter pylori Hp P-2]
gi|393157719|gb|EJC57980.1| ribonuclease III [Helicobacter pylori Hp P-2b]
Length = 239
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|383786986|ref|YP_005471555.1| ribonuclease III [Fervidobacterium pennivorans DSM 9078]
gi|383109833|gb|AFG35436.1| ribonuclease III [Fervidobacterium pennivorans DSM 9078]
Length = 245
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE---------NNRALGILGGYVIDTSVSLRL 92
L LQ+++GY FK+ LL A+ HSS++ E NN L LG V++ V L
Sbjct: 12 LGELQEKLGYHFKNPMLLFNALCHSSYAYEVNQLGRDVKNNERLEFLGDAVVELVVCDIL 71
Query: 93 LNKDIDISPKDLNRR----VSETSNVEISCAVD-GMHLGLQKVVRVSPKTNS-TVPAVVC 146
NK D + ++ + SE EI+ + G ++ L K KT T +++
Sbjct: 72 YNKYPDATEGEMAKTKGAVASEEVLTEIASQYELGKYIFLGK---GEEKTGGRTRSSIIA 128
Query: 147 GAFRAIFGAIAVDTG 161
F A+ AI +D G
Sbjct: 129 DTFEAVCAAIYLDGG 143
>gi|383749663|ref|YP_005424766.1| ribonuclease III [Helicobacter pylori ELS37]
gi|380874409|gb|AFF20190.1| ribonuclease III [Helicobacter pylori ELS37]
Length = 239
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVV 145
L +K L++ R S S + + LQ +RVS P+++
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSTHGFTKLAKA--IALQDYLRVSSSEEISKGREKPSIL 125
Query: 146 CGAFRAIFGAIAVDTG 161
AF A+ + ++ G
Sbjct: 126 SSAFEALMAGVYLEAG 141
>gi|258405510|ref|YP_003198252.1| ribonuclease III [Desulfohalobium retbaense DSM 5692]
gi|257797737|gb|ACV68674.1| ribonuclease III [Desulfohalobium retbaense DSM 5692]
Length = 237
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFS------EENNRALGILGGYVIDTSVSLRLL 93
+ L +Q+++ YTF+ LL A+THSS++ +E+N L LG V++ ++S L
Sbjct: 4 SVLRLVQQRLQYTFRDQQLLLLALTHSSYANEHPHIQEHNERLEFLGDAVLELAISEELY 63
Query: 94 NKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAF 149
+ + L S+ + E + A G L + + + S A++C
Sbjct: 64 LRYPEAPEGSLTSLRSKLVS-EPALAALGRQLEIAPALFLGRGEESQGGRERDAILCDVM 122
Query: 150 RAIFGAIAVDT 160
+IFGAI +D+
Sbjct: 123 ESIFGAIFLDS 133
>gi|384889296|ref|YP_005763598.1| ribonuclease III [Helicobacter pylori v225d]
gi|297379862|gb|ADI34749.1| ribonuclease III [Helicobacter pylori v225d]
Length = 238
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 35 SSPFAT--ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLR 91
+SP+ T + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYITNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGEL 67
Query: 92 LLNKDIDISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVVC 146
L +K L++ R S S + + LQ +RVS P+++
Sbjct: 68 LYHKFYQYDEGKLSKLRASIVSTHGFTKLAKV--IALQDYLRVSSSEEISNGREKPSILS 125
Query: 147 GAFRAIFGAIAVDTG 161
AF A+ + ++ G
Sbjct: 126 SAFEALMAGVYLEAG 140
>gi|308182848|ref|YP_003926975.1| ribonuclease III [Helicobacter pylori PeCan4]
gi|308065033|gb|ADO06925.1| ribonuclease III [Helicobacter pylori PeCan4]
Length = 239
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Query: 25 RAANDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYV 83
R+ N ++P+ T L+K +GY+FK LL +A+TH S NN L LG V
Sbjct: 5 RSQNSPYITPNNPYLT----LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAV 60
Query: 84 IDTSVSLRLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN- 138
+ + L +K L++ VS +++ A+ LQ +RVS
Sbjct: 61 LGLVIGELLYHKFYQYDEGKLSKLRASIVSAQGFTKLAKAI-----ALQDYLRVSSSEEI 115
Query: 139 ---STVPAVVCGAFRAIFGAIAVDTG 161
P+++ AF A+ + ++ G
Sbjct: 116 SNGREKPSILSSAFEALMAGVYLEAG 141
>gi|251788698|ref|YP_003003419.1| ribonuclease III [Dickeya zeae Ech1591]
gi|247537319|gb|ACT05940.1| ribonuclease III [Dickeya zeae Ech1591]
Length = 226
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQK++GYTF+ LL +A+TH S S ++N L LG ++ ++ L ++ + D+
Sbjct: 9 LQKKLGYTFQQYDLLLQALTHRSASSKHNERLEFLGDSILSFVIANALYHRFPRVDEGDM 68
Query: 105 NR 106
+R
Sbjct: 69 SR 70
>gi|425433524|ref|ZP_18814058.1| ribonuclease III [Helicobacter pylori GAM100Ai]
gi|410713866|gb|EKQ71358.1| ribonuclease III [Helicobacter pylori GAM100Ai]
Length = 240
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 9 NSPYVTPNNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 68
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 69 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 123
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 124 SILSSAFEALMAGVYLEAG 142
>gi|397904679|ref|ZP_10505580.1| Ribonuclease III [Caloramator australicus RC3]
gi|397162275|emb|CCJ32914.1| Ribonuclease III [Caloramator australicus RC3]
Length = 238
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
LE +K I F LL +A+THSS++ EN N L LG V+ VS +
Sbjct: 9 LEEFEKIIEVNFHDKDLLNKALTHSSYANENGLKYNDHNERLEFLGDSVLGLIVSEYIFK 68
Query: 95 KDIDISPKDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVC 146
K D L+R V E+S E++ A+ L+K +R+ T +++
Sbjct: 69 KYKDRQEGKLSRIRASVVCESSLAELARAIK-----LEKYLRIGKGEELTGGRNKDSLLA 123
Query: 147 GAFRAIFGAIAVDTG 161
A A+ AI +D G
Sbjct: 124 DATEAVIAAIYLDQG 138
>gi|337741391|ref|YP_004633119.1| ribonuclease 3 [Oligotropha carboxidovorans OM5]
gi|386030407|ref|YP_005951182.1| ribonuclease 3 [Oligotropha carboxidovorans OM4]
gi|336095475|gb|AEI03301.1| ribonuclease 3 [Oligotropha carboxidovorans OM4]
gi|336099055|gb|AEI06878.1| ribonuclease 3 [Oligotropha carboxidovorans OM5]
Length = 278
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 20/160 (12%)
Query: 26 AANDQRFKTSSPFATAL-ETLQKQIGYTFKSIGLLRRAMTH-SSFSEENNRA-----LGI 78
AA K P A AL ++++IG+TFK+ LL+ A+TH S+ NR L
Sbjct: 33 AAEASPKKVRRPSAKALLREIEQRIGHTFKNPNLLKTALTHVSALKPSQNRTDSYQRLEF 92
Query: 79 LGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVR------ 132
LG +V+ VS L ++++R+++ E +C LGL + ++
Sbjct: 93 LGDHVLGLIVSDMLYGAFPKADEGEMSKRLADLVRKE-ACVDVAKSLGLHENIKLGTVGA 151
Query: 133 -VSPKTNSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVFL 171
V + +++ +C A+ GAI +D G DA + F+
Sbjct: 152 GVGARLRNSIVGDIC---EAVIGAIFLDGGY--DAAEQFV 186
>gi|120602683|ref|YP_967083.1| ribonuclease III [Desulfovibrio vulgaris DP4]
gi|387153704|ref|YP_005702640.1| ribonuclease III [Desulfovibrio vulgaris RCH1]
gi|120562912|gb|ABM28656.1| RNAse III [Desulfovibrio vulgaris DP4]
gi|311234148|gb|ADP87002.1| ribonuclease III [Desulfovibrio vulgaris RCH1]
Length = 228
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 15/132 (11%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSE------ENNRALGILGGYVIDTSVSLRLLNK 95
++ LQK IG+ F + LL AMTHSS++ E+N L LG V++ VS L +
Sbjct: 4 VDELQKTIGHRFGDMELLLTAMTHSSWANEQAVPVEHNERLEFLGDAVLELCVSEELFRR 63
Query: 96 DIDISPKDLNRRVSETSNVEISCAVDGM--HLGLQKVVRVSPKTNS----TVPAVVCGAF 149
DL R S + +++G+ L L +R+ S +++ A
Sbjct: 64 FPSAREGDLTRMRSRLVS---KPSLEGVARELRLDMSLRLGKGEESQGGRERGSLLSDAL 120
Query: 150 RAIFGAIAVDTG 161
A+ GA+ +D G
Sbjct: 121 EAMLGAVFLDAG 132
>gi|420425347|ref|ZP_14924408.1| ribonuclease III [Helicobacter pylori Hp A-5]
gi|420433932|ref|ZP_14932937.1| ribonuclease III [Helicobacter pylori Hp H-24]
gi|420445290|ref|ZP_14944204.1| ribonuclease III [Helicobacter pylori Hp H-42]
gi|420464115|ref|ZP_14962890.1| ribonuclease III [Helicobacter pylori Hp H-4]
gi|420475504|ref|ZP_14974175.1| ribonuclease III [Helicobacter pylori Hp H-21]
gi|420479230|ref|ZP_14977879.1| ribonuclease III [Helicobacter pylori Hp H-34]
gi|420485692|ref|ZP_14984310.1| ribonuclease III [Helicobacter pylori Hp P-4]
gi|420507696|ref|ZP_15006205.1| ribonuclease III [Helicobacter pylori Hp H-24b]
gi|420509278|ref|ZP_15007780.1| ribonuclease III [Helicobacter pylori Hp H-24c]
gi|420516188|ref|ZP_15014651.1| ribonuclease III [Helicobacter pylori Hp P-4c]
gi|420517890|ref|ZP_15016344.1| ribonuclease III [Helicobacter pylori Hp P-4d]
gi|420533113|ref|ZP_15031474.1| ribonuclease III [Helicobacter pylori Hp M1]
gi|420534689|ref|ZP_15033037.1| ribonuclease III [Helicobacter pylori Hp M2]
gi|420536401|ref|ZP_15034743.1| ribonuclease III [Helicobacter pylori Hp M3]
gi|420538104|ref|ZP_15036434.1| ribonuclease III [Helicobacter pylori Hp M4]
gi|420539927|ref|ZP_15038244.1| ribonuclease III [Helicobacter pylori Hp M5]
gi|420541590|ref|ZP_15039898.1| ribonuclease III [Helicobacter pylori Hp M6]
gi|420543109|ref|ZP_15041403.1| ribonuclease III [Helicobacter pylori Hp M9]
gi|393041765|gb|EJB42779.1| ribonuclease III [Helicobacter pylori Hp A-5]
gi|393050347|gb|EJB51307.1| ribonuclease III [Helicobacter pylori Hp H-24]
gi|393063484|gb|EJB64331.1| ribonuclease III [Helicobacter pylori Hp H-42]
gi|393078557|gb|EJB79297.1| ribonuclease III [Helicobacter pylori Hp H-4]
gi|393093611|gb|EJB94228.1| ribonuclease III [Helicobacter pylori Hp H-21]
gi|393095472|gb|EJB96076.1| ribonuclease III [Helicobacter pylori Hp H-34]
gi|393103827|gb|EJC04390.1| ribonuclease III [Helicobacter pylori Hp P-4]
gi|393117549|gb|EJC18050.1| ribonuclease III [Helicobacter pylori Hp H-24b]
gi|393120704|gb|EJC21193.1| ribonuclease III [Helicobacter pylori Hp H-24c]
gi|393123389|gb|EJC23858.1| ribonuclease III [Helicobacter pylori Hp P-4d]
gi|393124487|gb|EJC24955.1| ribonuclease III [Helicobacter pylori Hp P-4c]
gi|393137574|gb|EJC37957.1| ribonuclease III [Helicobacter pylori Hp M1]
gi|393141329|gb|EJC41694.1| ribonuclease III [Helicobacter pylori Hp M2]
gi|393144049|gb|EJC44393.1| ribonuclease III [Helicobacter pylori Hp M3]
gi|393145659|gb|EJC45990.1| ribonuclease III [Helicobacter pylori Hp M4]
gi|393146144|gb|EJC46473.1| ribonuclease III [Helicobacter pylori Hp M5]
gi|393148210|gb|EJC48534.1| ribonuclease III [Helicobacter pylori Hp M6]
gi|393159692|gb|EJC59942.1| ribonuclease III [Helicobacter pylori Hp M9]
Length = 239
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|392541348|ref|ZP_10288485.1| RNase III, ds RNA [Pseudoalteromonas piscicida JCM 20779]
gi|409202181|ref|ZP_11230384.1| RNase III, ds RNA [Pseudoalteromonas flavipulchra JG1]
Length = 225
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
+E L +IGY F LL +A+TH S ++N L LG ++ ++ L +K
Sbjct: 5 VEELYNKIGYNFSDKALLEQALTHRSHKGQHNERLEFLGDSILSFVIANALYHKFPKARE 64
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
DL+R S + + A G+ L +R+ P + + + A AI GA+
Sbjct: 65 GDLSRMRSTLVRGQ-TLAEFGVEFALGDYLRLGPGELKSGGFRRESTLADAVEAIIGAVF 123
Query: 158 VDT 160
+D+
Sbjct: 124 LDS 126
>gi|307132118|ref|YP_003884134.1| RNase III [Dickeya dadantii 3937]
gi|306529647|gb|ADM99577.1| RNase III [Dickeya dadantii 3937]
Length = 226
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQK++GYTF+ LL +A+TH S S ++N L LG ++ ++ L ++ + D+
Sbjct: 9 LQKKLGYTFQQYDLLLQALTHRSASSKHNERLEFLGDSILSFVIANALYHRFPRVDEGDM 68
Query: 105 NR 106
+R
Sbjct: 69 SR 70
>gi|374619728|ref|ZP_09692262.1| ribonuclease III [gamma proteobacterium HIMB55]
gi|374302955|gb|EHQ57139.1| ribonuclease III [gamma proteobacterium HIMB55]
Length = 229
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 5/129 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L +L++ I Y F LL +A+TH SF NN L +G +++ V+ L + D+
Sbjct: 10 LASLERSIAYQFGDRDLLAQALTHRSFGATNNERLEFIGDGLVNAVVAKLLFSAHPDLDE 69
Query: 102 KDLNR-RVSETSNVEISCAVDGMHLG--LQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAV 158
L+R R S +S LG LQ +++ A AI GAI +
Sbjct: 70 GSLSRLRSKLVSRDGLSVIAKRFELGPLLQLGAGERKSGGRHRDSILADAVEAIAGAILM 129
Query: 159 DT--GKCDD 165
D+ G+ D
Sbjct: 130 DSDFGRASD 138
>gi|385228416|ref|YP_005788349.1| ribonuclease III [Helicobacter pylori Puno120]
gi|344334854|gb|AEN15298.1| ribonuclease III [Helicobacter pylori Puno120]
Length = 238
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 10/133 (7%)
Query: 34 TSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRL 92
T+SP+AT L+K +GY+FK LL +A+TH S NN L LG V+ + L
Sbjct: 13 TNSPYAT----LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELL 68
Query: 93 LNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVPAVVCGA 148
+K L++ + + + + + LQ + VS P+++ A
Sbjct: 69 YHKFYQYDEGKLSKLRASIVSAHGFTKLAKV-IALQDYLHVSSSEEISNGREKPSILSSA 127
Query: 149 FRAIFGAIAVDTG 161
F A+ + ++ G
Sbjct: 128 FEALMAGVYLEAG 140
>gi|385249180|ref|YP_005777399.1| ribonuclease III [Helicobacter pylori F57]
gi|317181975|dbj|BAJ59759.1| ribonuclease III [Helicobacter pylori F57]
Length = 238
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 24/142 (16%)
Query: 35 SSPFAT--ALETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLR 91
+SP+ T + TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGEL 67
Query: 92 LLNKDIDISPKDLNRRVSETSNVEISCAVDGMH--------LGLQKVVRVSPKTN----S 139
L +K L++ + ++ H + LQ +RVS
Sbjct: 68 LYHKFYQYDEGKLSK---------LRASIVSAHGFTKLAKVIALQDYLRVSSSEEISNGR 118
Query: 140 TVPAVVCGAFRAIFGAIAVDTG 161
P+++ AF A+ + ++ G
Sbjct: 119 EKPSILSSAFEALMAGVYLEAG 140
>gi|420466968|ref|ZP_14965725.1| ribonuclease III [Helicobacter pylori Hp H-9]
gi|393085366|gb|EJB86054.1| ribonuclease III [Helicobacter pylori Hp H-9]
Length = 239
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPNNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISNGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
>gi|15611674|ref|NP_223325.1| ribonuclease III [Helicobacter pylori J99]
gi|420465360|ref|ZP_14964127.1| ribonuclease III [Helicobacter pylori Hp H-6]
gi|7531198|sp|Q9ZLH2.1|RNC_HELPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|4155159|gb|AAD06188.1| RIBONUCLEASE III [Helicobacter pylori J99]
gi|393082847|gb|EJB83563.1| ribonuclease III [Helicobacter pylori Hp H-6]
Length = 239
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 35 SSPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSL 90
+SP+ T TL+K +GY+FK LL +A+TH S NN L LG V+ +
Sbjct: 8 NSPYVTPDNPYLTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGE 67
Query: 91 RLLNKDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTN----STVP 142
L +K L++ VS +++ A+ LQ +RVS P
Sbjct: 68 LLYHKFYQYDEGKLSKLRASIVSAHGFTKLAKAI-----ALQDYLRVSSSEEISKGREKP 122
Query: 143 AVVCGAFRAIFGAIAVDTG 161
+++ AF A+ + ++ G
Sbjct: 123 SILSSAFEALMAGVYLEAG 141
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,631,027,450
Number of Sequences: 23463169
Number of extensions: 97536113
Number of successful extensions: 239058
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 1122
Number of HSP's that attempted gapping in prelim test: 237682
Number of HSP's gapped (non-prelim): 1923
length of query: 184
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 51
effective length of database: 9,238,593,890
effective search space: 471168288390
effective search space used: 471168288390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 72 (32.3 bits)