BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029991
         (184 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
           Aeolicus Complexed With Ds-Rna At 2.15 Angstrom
           Resolution
          Length = 220

 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 18/129 (13%)

Query: 42  LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
           LE L+K++GYTFK   LL +A+TH S+S +E+   L  LG    D  V+  +++  +  S
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLG----DALVNFFIVDLLVQYS 59

Query: 101 PKDLNRRVSETSNVEISCAVD------GMHLGLQKVVRVSP-KTNSTVPAVVCGAFRAIF 153
           P   N+R    S ++     +         L L K +R+   K N T   ++   F+A++
Sbjct: 60  P---NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINET---IIGDVFKALW 113

Query: 154 GAIAVDTGK 162
            A+ +D+G+
Sbjct: 114 AAVYIDSGR 122


>pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
           Aeolicus Complexed With Double-stranded Rna At 2.9-
           Angstrom Resolution
 pdb|1YYO|B Chain B, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
           Aeolicus Complexed With Double-stranded Rna At 2.9-
           Angstrom Resolution
          Length = 221

 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 18/129 (13%)

Query: 42  LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
           LE L+K++GYTFK   LL +A+TH S+S +E+   L  LG    D  V+  +++  +  S
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLG----DALVNFFIVDLLVQYS 59

Query: 101 PKDLNRRVSETSNVEISCAVD------GMHLGLQKVVRVSP-KTNSTVPAVVCGAFRAIF 153
           P   N+R    S ++     +         L L K +R+   K N T   ++   F+A++
Sbjct: 60  P---NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINET---IIGDVFKALW 113

Query: 154 GAIAVDTGK 162
            A+ +D+G+
Sbjct: 114 AAVYIDSGR 122


>pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From
           Aquifex Aeolicus At 2.15 Angstrom Resolution
 pdb|1I4S|B Chain B, Crystal Structure Of Rnase Iii Endonuclease Domain From
           Aquifex Aeolicus At 2.15 Angstrom Resolution
          Length = 147

 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 12/126 (9%)

Query: 42  LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
           LE L+K++GYTFK   LL +A+TH S+S +E+   L  LG    D  V+  +++  +  S
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLG----DALVNFFIVDLLVQYS 59

Query: 101 PKDLNRRVSETSNVEISCAVDGM---HLGLQKVVRVSP-KTNSTVPAVVCGAFRAIFGAI 156
           P      +S      IS     +    L L K +R+   K N T   ++   F A++ A+
Sbjct: 60  PNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINET---IIGDVFEALWAAV 116

Query: 157 AVDTGK 162
            +D+G+
Sbjct: 117 YIDSGR 122


>pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.10
           Angstrom Resolution
 pdb|1JFZ|B Chain B, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.10
           Angstrom Resolution
 pdb|1JFZ|C Chain C, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.10
           Angstrom Resolution
 pdb|1JFZ|D Chain D, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.10
           Angstrom Resolution
 pdb|1RC5|A Chain A, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.30
           Angstrom Resolution
 pdb|1RC5|B Chain B, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.30
           Angstrom Resolution
 pdb|1RC5|C Chain C, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.30
           Angstrom Resolution
 pdb|1RC5|D Chain D, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
           Endonuclease Domain From Aquifex Aeolicus At 2.30
           Angstrom Resolution
          Length = 154

 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 12/126 (9%)

Query: 42  LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
           LE L+K++GYTFK   LL +A+TH S+S +E+   L  LG    D  V+  +++  +  S
Sbjct: 5   LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLG----DALVNFFIVDLLVQYS 60

Query: 101 PKDLNRRVSETSNVEISCAVDGM---HLGLQKVVRVSP-KTNSTVPAVVCGAFRAIFGAI 156
           P      +S      IS     +    L L K +R+   K N T   ++   F A++ A+
Sbjct: 61  PNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINET---IIGDVFEALWAAV 117

Query: 157 AVDTGK 162
            +D+G+
Sbjct: 118 YIDSGR 123


>pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
           Aeolicus Complexed With Double Stranded Rna At 2.1-
           Angstrom Resolution
 pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
           Aeolicus Complexed With Double Stranded Rna At 2.1-
           Angstrom Resolution
          Length = 221

 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 18/129 (13%)

Query: 42  LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
           LE L+K++GYTFK   LL +A+TH S+S +E+   L  LG    D  V+  +++  +  S
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLG----DALVNFFIVDLLVQYS 59

Query: 101 PKDLNRRVSETSNVEISCAVD------GMHLGLQKVVRVSP-KTNSTVPAVVCGAFRAIF 153
           P   N+R    S ++     +         L L K +R+   K N T   ++   F+A++
Sbjct: 60  P---NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINET---IIGDVFQALW 113

Query: 154 GAIAVDTGK 162
            A+ +D+G+
Sbjct: 114 AAVYIDSGR 122


>pdb|3O2R|B Chain B, Structural Flexibility In Region Involved In Dimer
           Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
           From Campylobacter Jejuni
 pdb|3O2R|D Chain D, Structural Flexibility In Region Involved In Dimer
           Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
           From Campylobacter Jejuni
          Length = 144

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 5/125 (4%)

Query: 42  LETLQKQIGYTFKSIGLLRRAMTHSSFSEE--NNRALGILGGYVIDTSVSLRLLNKDIDI 99
           +E L++ + Y FK   LL  A+TH SF ++  NN  L  LG  V+D  V   L +K    
Sbjct: 2   IEKLEQSLTYEFKDKNLLIHALTHKSFXKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKD 61

Query: 100 SPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAI 156
           +  DL++ R +  +    +   + ++LG   ++ V+ + N     P+++  A  AI GAI
Sbjct: 62  AEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAI 121

Query: 157 AVDTG 161
            ++ G
Sbjct: 122 HLEAG 126


>pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double-Stranded Rna At 2.5-Angstrom
           Resolution
 pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double-Stranded Rna At 2.5-Angstrom
           Resolution
 pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double Stranded Rna At 2.8-Angstrom
           Resolution
 pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double Stranded Rna At 2.8-Angstrom
           Resolution
 pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double Stranded Rna At 2.8-Angstrom
           Resolution
 pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Double Stranded Rna At 2.8-Angstrom
           Resolution
 pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 2.9-Angstrom Resolution
 pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 2.9-Angstrom Resolution
 pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 2.5-Angstrom Resolution
 pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 2.5-Angstrom Resolution
 pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 1.7-Angstrom Resolution
 pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
           Complexed With Ds-Rna At 1.7-Angstrom Resolution
          Length = 221

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 18/129 (13%)

Query: 42  LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
           LE L+K++GYTFK   LL +A+TH S+S +E+   L  LG    D  V+  +++  +  S
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLG----DALVNFFIVDLLVQYS 59

Query: 101 PKDLNRRVSETSNVEISCAVD------GMHLGLQKVVRVSP-KTNSTVPAVVCGAFRAIF 153
           P   N+R    S ++     +         L L K +R+   K N T   ++   F A++
Sbjct: 60  P---NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINET---IIGDVFEALW 113

Query: 154 GAIAVDTGK 162
            A+ +D+G+
Sbjct: 114 AAVYIDSGR 122


>pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer
           Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
           From Campylobacter Jejuni
 pdb|3O2R|C Chain C, Structural Flexibility In Region Involved In Dimer
           Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
           From Campylobacter Jejuni
          Length = 170

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 42  LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
           +E L++ + Y FK   LL  A+TH SF +  NN  L  LG  V+D  V   L +K    +
Sbjct: 28  IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 87

Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
             DL++ R +  +    +   + ++LG   ++ V+ + N     P+++  A  AI GAI 
Sbjct: 88  EGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIH 147

Query: 158 VDTG 161
           ++ G
Sbjct: 148 LEAG 151


>pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
           Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
 pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
           Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
          Length = 248

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)

Query: 42  LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
           +E L++ + Y FK   LL  A+TH SF +  NN  L  LG  V+D  V   L +K    +
Sbjct: 28  IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 87

Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
             DL++ R +  +    +   + ++LG   ++ V+ + N     P+++  A  AI GAI 
Sbjct: 88  EGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIH 147

Query: 158 VDTG 161
           ++ G
Sbjct: 148 LEAG 151


>pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
           Complexed With Product Of Double-stranded Rna Processing
 pdb|2EZ6|B Chain B, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
           Complexed With Product Of Double-stranded Rna Processing
          Length = 221

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 18/129 (13%)

Query: 42  LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
           LE L+K++GYTFK   LL +A+TH S+S +E+   L  LG  +++  + + LL   +  S
Sbjct: 4   LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGNALVNFFI-VDLL---VQYS 59

Query: 101 PKDLNRRVSETSNVEISCAVD------GMHLGLQKVVRVSP-KTNSTVPAVVCGAFRAIF 153
           P   N+R    S ++     +         L L K +R+   K N T   ++   F A++
Sbjct: 60  P---NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINET---IIGDVFEALW 113

Query: 154 GAIAVDTGK 162
            A+ +D+G+
Sbjct: 114 AAVYIDSGR 122


>pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From
           Thermotoga Maritima At 2.0 A Resolution
 pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From
           Thermotoga Maritima At 2.0 A Resolution
          Length = 252

 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 17/135 (12%)

Query: 42  LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRA----------LGILGGYVIDTSVSLR 91
           +E  QK+ G  FK+  LL RA+ HSS++ E N+A          L  LG  V++  V   
Sbjct: 21  VEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEI 80

Query: 92  LLNKDIDISPKDLNRRVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNST----VPAVVC 146
           L  K  +    DL R  S  ++ E+   V   M+LG  K + +      T      +++ 
Sbjct: 81  LYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLG--KFLFLGKGEEKTGGRDRDSILA 138

Query: 147 GAFRAIFGAIAVDTG 161
            AF A+  AI +D G
Sbjct: 139 DAFEALLAAIYLDQG 153


>pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
           Dicer
          Length = 265

 Score = 35.4 bits (80), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 33  KTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFS----EENNRALGILGGYVIDTSV 88
           KT +   +  ET +K+I Y FK+   L +A TH+S+      +  + L  LG  ++D  +
Sbjct: 6   KTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLI 65

Query: 89  SLRLLNKDIDISP 101
           +  L       SP
Sbjct: 66  TKHLYEDPRQHSP 78


>pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
           Dicer
          Length = 265

 Score = 35.4 bits (80), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 33  KTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFS----EENNRALGILGGYVIDTSV 88
           KT +   +  ET +K+I Y FK+   L +A TH+S+      +  + L  LG  ++D  +
Sbjct: 6   KTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLI 65

Query: 89  SLRLLNKDIDISP 101
           +  L       SP
Sbjct: 66  TKHLYEDPRQHSP 78


>pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
           Human Dicer
 pdb|2EB1|B Chain B, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
           Human Dicer
 pdb|2EB1|C Chain C, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
           Human Dicer
          Length = 200

 Score = 31.6 bits (70), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 40  TALETLQKQIGYTFKSIGLLRRAMTHSSFSEEN----NRALGILGGYVIDTSVSLRLLNK 95
           +  E  +K+I Y FK+   L +A TH+S+         + L  LG  ++D  ++  L   
Sbjct: 6   SGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYED 65

Query: 96  DIDISP 101
               SP
Sbjct: 66  PRQHSP 71


>pdb|1SGM|A Chain A, Crystal Structure Of Hypothetical Protein Yxaf
 pdb|1SGM|B Chain B, Crystal Structure Of Hypothetical Protein Yxaf
          Length = 191

 Score = 27.7 bits (60), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 53  FKSI-GLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKD 96
           FKS   +  R +  + F+EE    LG L   +I+  + L L NKD
Sbjct: 128 FKSWEAVFARKLMENGFAEEEANQLGTLINSMIEGGIMLSLTNKD 172


>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
 pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
          Length = 428

 Score = 26.6 bits (57), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 127 LQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVF 170
           L+++ +V    N  +PAV  G     +  IA +TGKC  A DVF
Sbjct: 72  LKEMAKVEGLWNLFLPAV-SGLSHVDYALIAEETGKCFFAPDVF 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,825,114
Number of Sequences: 62578
Number of extensions: 175028
Number of successful extensions: 767
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 19
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)