BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029991
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8Y691|RNC_LISMO Ribonuclease 3 OS=Listeria monocytogenes serovar 1/2a (strain ATCC
BAA-679 / EGD-e) GN=rnc PE=3 SV=1
Length = 229
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ FK++ LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + AV K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>sp|B8DDU8|RNC_LISMH Ribonuclease 3 OS=Listeria monocytogenes serotype 4a (strain HCC23)
GN=rnc PE=3 SV=1
Length = 229
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ FK + LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + AV K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>sp|Q71YL2|RNC_LISMF Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain F2365)
GN=rnc PE=3 SV=1
Length = 229
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ FK + LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + AV K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>sp|C1KWA4|RNC_LISMC Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain
CLIP80459) GN=rnc PE=3 SV=1
Length = 229
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ FK + LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + AV K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>sp|Q92AK3|RNC_LISIN Ribonuclease 3 OS=Listeria innocua serovar 6a (strain CLIP 11262)
GN=rnc PE=3 SV=1
Length = 229
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ F+++ LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + AV K VR+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAVH-----FSKYVRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>sp|Q3SH50|RNC_THIDA Ribonuclease 3 OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=rnc PE=3 SV=1
Length = 226
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQ+ +GYTF GLL++A+TH S+ NN L LG V++ SV+ L + D+ L
Sbjct: 10 LQQALGYTFSRSGLLQQALTHRSYGALNNERLEFLGDSVLNCSVARALYDAFPDLPEGSL 69
Query: 105 NR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
+R V + + EI+ A+ D + LG ++ P+++ A ++FGA+
Sbjct: 70 SRLRANLVRQETLAEIAGALRLGDSLRLGEGEL----KSGGFRRPSILADALESLFGAVF 125
Query: 158 VDTGKCDDAGDVFLRV 173
+D G D+A V R+
Sbjct: 126 LDAG-FDEAQRVVRRL 140
>sp|A0AJR0|RNC_LISW6 Ribonuclease 3 OS=Listeria welshimeri serovar 6b (strain ATCC 35897
/ DSM 20650 / SLCC5334) GN=rnc PE=3 SV=1
Length = 229
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLN 94
E LQ+ +G+ F+ + LL++A THSS+ E +N L LG V++ +VS L N
Sbjct: 4 WEELQESVGFDFQDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFN 63
Query: 95 KDIDISPKDLNRR----VSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVC 146
K D++ + + V E S VE + A+ K +R+ T PA++
Sbjct: 64 KYPDMAEGHMTKMRAAIVCEPSLVEFAEAIH-----FSKYIRLGKGEEKAGGRTRPALLA 118
Query: 147 GAFRAIFGAIAVDTG 161
F + GA+ +D G
Sbjct: 119 DVFESFIGALYLDNG 133
>sp|B4U7T8|RNC_HYDS0 Ribonuclease 3 OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=rnc PE=3
SV=1
Length = 232
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 13/130 (10%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSE--ENNRALGILGGYVIDTSVSLRLLNKDID 98
+ E L+++IGY FK L+++A TH SFS+ EN L LG D V+ +N ++
Sbjct: 3 SFELLEEKIGYRFKDKNLVKKAFTHISFSKSSENYEVLEFLG----DALVNFMTVNILVE 58
Query: 99 ISPKDLNRRVSETSNVEIS---CAVDGMHLGLQKVVRVSP----KTNSTVPAVVCGAFRA 151
P +S+ + IS A L +K + +S K ++ P+++C F A
Sbjct: 59 AFPNKKEGELSQLKSFLISEEFLASLAKSLNFEKYILISKGEELKGSNKNPSILCDVFEA 118
Query: 152 IFGAIAVDTG 161
+ AI +D+G
Sbjct: 119 FWAAIYIDSG 128
>sp|A6Q1H0|RNC_NITSB Ribonuclease 3 OS=Nitratiruptor sp. (strain SB155-2) GN=rnc PE=3
SV=1
Length = 226
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSF-SEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE +K++GY+F+ LL+ A+TH S+ S NN L LG V+D V L K +
Sbjct: 4 LEEFEKKLGYSFEDKKLLKEALTHKSYKSPVNNERLEFLGDAVLDLVVGEYLFKKFPKAN 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIA 157
+L++ R S + + + +G + + + N T P+++ AF A+ GAI
Sbjct: 64 EGELSKLRASLVNEEGFAKLAQKLDIGKYIFISQAEENNQGRTKPSLLSNAFEAVMGAIY 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEKG 127
>sp|B4RCU4|RNC_PHEZH Ribonuclease 3 OS=Phenylobacterium zucineum (strain HLK1) GN=rnc
PE=3 SV=1
Length = 238
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 39 ATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-----ENNRALGILGGYVIDTSVSLRLL 93
A A+ L+++IGY F LL RA+TH+S + +N L LG V++ + RL+
Sbjct: 5 AAAVAELERRIGYVFTDRDLLERALTHASVGDGARAVRHNERLEFLGDRVLNLCAAERLM 64
Query: 94 NKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS----TVPAVVCGAF 149
D D +++R ++ N +CA GLQ+ +R+S AV+ A
Sbjct: 65 ALDPDAREGEMSRLLASLVNYH-ACARAAKRAGLQEALRLSASATKVGARKSDAVLGDAC 123
Query: 150 RAIFGAIAVDTG 161
A+ A+ +D G
Sbjct: 124 EALIAALYIDGG 135
>sp|Q6MLR5|RNC_BDEBA Ribonuclease 3 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 /
DSM 50701 / NCIB 9529 / HD100) GN=rnc PE=3 SV=1
Length = 234
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 11/128 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSE------ENNRALGILGGYVIDTSVSLRLLNKDI 97
+L++++G+ FK+ LL RA+TH SF+ E+N L LG V+D V L K
Sbjct: 8 SLEERVGHQFKNPALLERALTHKSFANELRNTVEHNEKLEFLGDAVLDLVVGEFLYEKFP 67
Query: 98 DISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIF 153
+ L+++ + N E+ + + +GL K++++ + P ++ +F AI
Sbjct: 68 TDTEGGLSKKRASIVNEEVLSEL-ALEMGLNKLMQLGKGEALTGGAQKPRLIASSFEAIV 126
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 127 GALYLDGG 134
>sp|Q5F9X7|RNC_NEIG1 Ribonuclease 3 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA
1090) GN=rnc PE=3 SV=1
Length = 239
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ + LLRRA+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDMSLLRRALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ + P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSSGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>sp|O67082|RNC_AQUAE Ribonuclease 3 OS=Aquifex aeolicus (strain VF5) GN=rnc PE=1 SV=1
Length = 221
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 18/129 (13%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFS-EENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE L+K++GYTFK LL +A+TH S+S +E+ L LG D V+ +++ + S
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLG----DALVNFFIVDLLVQYS 59
Query: 101 PKDLNRRVSETSNVEISCAVD------GMHLGLQKVVRVSP-KTNSTVPAVVCGAFRAIF 153
P N+R S ++ + L L K +R+ K N T ++ F A++
Sbjct: 60 P---NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINET---IIGDVFEALW 113
Query: 154 GAIAVDTGK 162
A+ +D+G+
Sbjct: 114 AAVYIDSGR 122
>sp|Q5P086|RNC_AROAE Ribonuclease 3 OS=Aromatoleum aromaticum (strain EbN1) GN=rnc PE=3
SV=1
Length = 225
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDI 97
A L+ LQ+ +G+ F + LL +A+TH SF + NN L LG +++ V++ L +
Sbjct: 1 MAGKLDRLQRSLGHRFDNPALLEQALTHRSFGQPNNERLEFLGDSILNCVVAIALFERFA 60
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMH-----LGLQKVVRVSPKTNST----VPAVVCG 147
+ +++R R S + C DG+H L L + +R+ + P+++
Sbjct: 61 SLREGEMSRLRAS------LVCQ-DGLHRVALELDLGEYLRLGEGEMKSGGFRRPSILAD 113
Query: 148 AFRAIFGAIAVDTG 161
A A+F A +D G
Sbjct: 114 ALEAVFAATFLDQG 127
>sp|B4RJT7|RNC_NEIG2 Ribonuclease 3 OS=Neisseria gonorrhoeae (strain NCCP11945) GN=rnc
PE=3 SV=1
Length = 239
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ + LLRRA+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDMSLLRRALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>sp|Q9PM40|RNC_CAMJE Ribonuclease 3 OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=rnc PE=1 SV=1
Length = 224
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG ++ V+ + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>sp|A7H5Y2|RNC_CAMJD Ribonuclease 3 OS=Campylobacter jejuni subsp. doylei (strain ATCC
BAA-1458 / RM4099 / 269.97) GN=rnc PE=3 SV=1
Length = 225
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFTKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + V+ + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>sp|Q9K0C8|RNC_NEIMB Ribonuclease 3 OS=Neisseria meningitidis serogroup B (strain MC58)
GN=rnc PE=3 SV=1
Length = 239
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>sp|Q5HSF8|RNC_CAMJR Ribonuclease 3 OS=Campylobacter jejuni (strain RM1221) GN=rnc PE=3
SV=1
Length = 224
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLERSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + V+ + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGREKPSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>sp|Q9JVD3|RNC_NEIMA Ribonuclease 3 OS=Neisseria meningitidis serogroup A / serotype 4A
(strain Z2491) GN=rnc PE=3 SV=1
Length = 239
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 44 TLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKD 103
+QK++GY F+ I LLR+A+TH S ++N +G +++ +V+ L + ++ +
Sbjct: 13 AIQKKLGYAFRDISLLRQALTHRSHHAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGE 72
Query: 104 LNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAI 156
L+R V+E E++ + DG++LG ++ P+++ A A+F A+
Sbjct: 73 LSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGEL----KSGGFRRPSILADAMEAMFAAV 128
Query: 157 AVDT 160
+ D
Sbjct: 129 SFDA 132
>sp|A8FNU7|RNC_CAMJ8 Ribonuclease 3 OS=Campylobacter jejuni subsp. jejuni serotype O:6
(strain 81116 / NCTC 11828) GN=rnc PE=3 SV=1
Length = 224
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+E L++ + Y FK LL A+TH SF + NN L LG V+D V L +K +
Sbjct: 4 IEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDA 63
Query: 101 PKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTN--STVPAVVCGAFRAIFGAIA 157
DL++ R + + + + ++LG + V+ + N P+++ A AI GAI
Sbjct: 64 EGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGKEKPSILSDALEAIIGAIH 123
Query: 158 VDTG 161
++ G
Sbjct: 124 LEAG 127
>sp|Q0AF70|RNC_NITEC Ribonuclease 3 OS=Nitrosomonas eutropha (strain C91) GN=rnc PE=3
SV=1
Length = 245
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 15/124 (12%)
Query: 47 KQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNR 106
+++GYTFK LL+ A+TH S NN L LG V++ +VS L + + + DL R
Sbjct: 29 QKLGYTFKQPDLLQEALTHRSLGFPNNERLEFLGDSVLNCAVSTLLFKRFLLLPEGDLTR 88
Query: 107 RVSETSNVEISCAVDGMH-----LGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
+ N D +H LG+ +++ + + P+++ A AI GAI
Sbjct: 89 LRANFVN------QDALHQLASALGIGELILLGDGERKSGGHQRPSILANAMEAIIGAIY 142
Query: 158 VDTG 161
+++G
Sbjct: 143 LESG 146
>sp|A8Z6F6|RNC_CAMC1 Ribonuclease 3 OS=Campylobacter concisus (strain 13826) GN=rnc PE=3
SV=1
Length = 223
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDIS 100
LE ++ +GY FK LL A+TH S + NN L LG V+D V+ L K I+
Sbjct: 4 LEEFERNLGYKFKKSELLEEALTHKSTKQALNNERLEFLGDAVMDLLVAEYLFKKFSKIA 63
Query: 101 PKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAI 156
D+++ + N E S A L + + +R+S + +++ AF A+ GAI
Sbjct: 64 EGDMSKLRAALVN-EKSFANMARRLKMGEFLRLSQAEENNGGREKDSILSDAFEAVMGAI 122
Query: 157 AVDTG 161
++ G
Sbjct: 123 YLEAG 127
>sp|Q931T1|RNC_STAAM Ribonuclease 3 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=rnc PE=3 SV=1
Length = 243
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>sp|A7X1J9|RNC_STAA1 Ribonuclease 3 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698)
GN=rnc PE=3 SV=1
Length = 243
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>sp|P66669|RNC_STAAW Ribonuclease 3 OS=Staphylococcus aureus (strain MW2) GN=rnc PE=3
SV=1
Length = 243
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>sp|A8Z3R9|RNC_STAAT Ribonuclease 3 OS=Staphylococcus aureus (strain USA300 / TCH1516)
GN=rnc PE=3 SV=1
Length = 243
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>sp|Q6G9Y0|RNC_STAAS Ribonuclease 3 OS=Staphylococcus aureus (strain MSSA476) GN=rnc
PE=3 SV=1
Length = 243
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>sp|Q6GHK2|RNC_STAAR Ribonuclease 3 OS=Staphylococcus aureus (strain MRSA252) GN=rnc
PE=3 SV=1
Length = 243
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>sp|P66668|RNC_STAAN Ribonuclease 3 OS=Staphylococcus aureus (strain N315) GN=rnc PE=1
SV=1
Length = 243
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>sp|A6QGD3|RNC_STAAE Ribonuclease 3 OS=Staphylococcus aureus (strain Newman) GN=rnc PE=3
SV=1
Length = 243
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>sp|Q5HGJ9|RNC_STAAC Ribonuclease 3 OS=Staphylococcus aureus (strain COL) GN=rnc PE=3
SV=1
Length = 243
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>sp|A5ISB8|RNC_STAA9 Ribonuclease 3 OS=Staphylococcus aureus (strain JH9) GN=rnc PE=3
SV=1
Length = 243
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>sp|Q2FZ50|RNC_STAA8 Ribonuclease 3 OS=Staphylococcus aureus (strain NCTC 8325) GN=rnc
PE=3 SV=1
Length = 243
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>sp|Q2FHK5|RNC_STAA3 Ribonuclease 3 OS=Staphylococcus aureus (strain USA300) GN=rnc PE=3
SV=1
Length = 243
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>sp|A6U152|RNC_STAA2 Ribonuclease 3 OS=Staphylococcus aureus (strain JH1) GN=rnc PE=3
SV=1
Length = 243
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
AF A GA+ +D G
Sbjct: 132 DAFEAFIGALYLDQG 146
>sp|A9BNJ5|RNC_DELAS Ribonuclease 3 OS=Delftia acidovorans (strain DSM 14801 / SPH-1)
GN=rnc PE=3 SV=1
Length = 227
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L LQ ++ + F LL+RA+TH SFS +NN L LG V++ ++S L + +
Sbjct: 5 LNALQLRLQHQFAEPALLQRAVTHRSFSADNNERLEFLGDSVLNLAISSLLYQRLSSMPE 64
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRV----SPKTNSTVPAVVCGAFRAIFGAIA 157
DL+ RV E + + L L ++R+ S P+++ A A+ GA+
Sbjct: 65 GDLS-RVRANLVKEGTLHQIALRLQLPDLLRLGEGESKSGGKQRPSILADAVEALIGAVY 123
Query: 158 VDTG 161
+D G
Sbjct: 124 LDAG 127
>sp|Q46Z18|RNC_CUPPJ Ribonuclease 3 OS=Cupriavidus pinatubonensis (strain JMP134 / LMG
1197) GN=rnc PE=3 SV=1
Length = 256
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ+++GY F LL++A+TH S S ++N L LG V++ +V+ L +
Sbjct: 3 LDALQQRLGYRFSKPELLQQALTHRSHSAQHNERLEFLGDSVLNCAVADMLFGMFGKLDE 62
Query: 102 KDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIA 157
DL+R + + + M L L +V+R+ + P+++ A AI GA+
Sbjct: 63 GDLSRVRANLVKQQALYEIAQM-LQLSEVLRLGEGELKSGGFRRPSILADALEAIVGAVF 121
Query: 158 VDTG 161
+D G
Sbjct: 122 LDAG 125
>sp|Q47EF7|RNC_DECAR Ribonuclease 3 OS=Dechloromonas aromatica (strain RCB) GN=rnc PE=3
SV=1
Length = 222
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 43 ETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPK 102
+++ K++ + F L R A+TH SF NN L LG V+D ++ L ++ D+
Sbjct: 4 QSVAKKLNHCFSDQALFRTALTHRSFGTPNNERLEFLGDGVLDFVIAASLYHRFPDLPEG 63
Query: 103 DLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGAIAV 158
DL+R + E + + L + +R+ + P+++ A A+FGAI +
Sbjct: 64 DLSRLRANLVRQETLHRL-ALELNIGAFLRLGEGELKSGGAQRPSILADALEALFGAIYL 122
Query: 159 DTG 161
D G
Sbjct: 123 DAG 125
>sp|Q8ER05|RNC_OCEIH Ribonuclease 3 OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM
11309 / KCTC 3954 / HTE831) GN=rnc PE=3 SV=1
Length = 228
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 16/142 (11%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILGGYVIDTSVSLRLLNKDI 97
L++ +G +F+ LL+ A THSS+ E +N L LG V++ +VS L +
Sbjct: 6 LEEHLGISFQQKALLKEAFTHSSYVNEHRKQRLSDNERLEFLGDAVLELAVSQYLYRNNK 65
Query: 98 DISPKDLNR-RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAI 152
D+ ++ + R + + + + G K +R+ T PA++ AF A
Sbjct: 66 DMPEGEMTKLRAAIVCEPSLKNFAEELEFG--KFLRLGKGEQQTGGRERPAILADAFEAF 123
Query: 153 FGAIAVDTGKCDDAGDVFLRVH 174
GA+ +D G D+ D FL +H
Sbjct: 124 LGALYLDQG-FDNVLD-FLNIH 143
>sp|Q3Z7Q8|RNC_DEHE1 Ribonuclease 3 OS=Dehalococcoides ethenogenes (strain 195) GN=rnc
PE=3 SV=1
Length = 237
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 15/151 (9%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEEN-------NRALGILGGYVIDTSVSLRLLN 94
L L+K +G F+++ LL +A+ H+S+ EN N + LG V+ + RL +
Sbjct: 4 LTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRLYH 63
Query: 95 KDIDISPKDLNR----RVSETSNVEISCAVD-GMHLGLQKVVRVSPKTNSTVPAVVCGAF 149
DI DL R V S V ++ ++ G +L L + S PA + GAF
Sbjct: 64 DFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDASK--GRFKPANLAGAF 121
Query: 150 RAIFGAIAVDTGKCDDAGDVFLRVHSGEVGK 180
A+ AI +D G D +V R+ E+ +
Sbjct: 122 EAVLAAIYLDKG-IDATREVIFRLFKTEMER 151
>sp|A0RRM7|RNC_CAMFF Ribonuclease 3 OS=Campylobacter fetus subsp. fetus (strain 82-40)
GN=rnc PE=3 SV=1
Length = 223
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSF-SEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
L L++ +GY FK+ LL+ A+TH S S NN L LG V+D V L K D
Sbjct: 4 LNRLEEHLGYKFKNKTLLKEALTHKSMKSSVNNERLEFLGDAVLDLIVGEYLFFKFKDTD 63
Query: 101 PKDLNR----RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNS--TVPAVVCGAFRAIFG 154
+L++ V+E S IS + LG + + N+ P++V A A+ G
Sbjct: 64 EGNLSKLRAALVNEKSFASISSQI---RLGDFLYLSAAEDNNNGRNKPSLVSDALEALMG 120
Query: 155 AIAVDTG 161
AI +++G
Sbjct: 121 AIYLESG 127
>sp|Q1LKN1|RNC_RALME Ribonuclease 3 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123
/ DSM 2839) GN=rnc PE=3 SV=1
Length = 256
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 42 LETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISP 101
L+ LQ+++GY F LL++A+TH S S ++N L LG V++ +V+ L +
Sbjct: 3 LDALQQRLGYRFSKPELLQQALTHRSHSAQHNERLEFLGDSVLNCAVADMLFGMFGKLDE 62
Query: 102 KDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFG 154
DL+R V + + EI+ + D + LG ++ P+++ A AI G
Sbjct: 63 GDLSRVRANLVKQQALYEIAQMLQLSDALRLGEGEL----KSGGFRRPSILADALEAIVG 118
Query: 155 AIAVDTG 161
A+ +D G
Sbjct: 119 AVFLDAG 125
>sp|B2U981|RNC_RALPJ Ribonuclease 3 OS=Ralstonia pickettii (strain 12J) GN=rnc PE=3 SV=1
Length = 256
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+L+ LQ+++GY F LL++A+TH S S +N L LG +++ +V+ L +
Sbjct: 2 SLDALQQRLGYRFSKPELLQQALTHRSHSAMHNERLEFLGDSILNCAVADMLYGMFGKLD 61
Query: 101 PKDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
DL+R V + + EI+ + D + LG ++ P+++ A AIF
Sbjct: 62 EGDLSRVRANLVKQQALYEIAQMLQLPDALRLGEGEL----KSGGFRRPSILADALEAIF 117
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 118 GAVFLDGG 125
>sp|Q2YXI3|RNC_STAAB Ribonuclease 3 OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=rnc PE=3 SV=1
Length = 243
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-------ENNRALGILGGYVIDTSVSL 90
F +T ++G+T+++I L ++A +HSSF ++N L LG V++ +VS
Sbjct: 13 FRKRFDTKMTELGFTYQNIDLYQQAFSHSSFINDFNMNRLDHNERLEFLGDAVLELTVSR 72
Query: 91 RLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKTNS-TVPAVVC 146
L +K ++ +L ++ T E S + +GL +++ + KT T P+++
Sbjct: 73 YLFDKHPNLPEGNLT-KMRATIVCEPSLVIFANKIGLNEMILLGKGEEKTGGRTRPSLIS 131
Query: 147 GAFRAIFGAIAVDTG 161
F A GA+ +D G
Sbjct: 132 DVFEAFIGALYLDQG 146
>sp|Q820I0|RNC_NITEU Ribonuclease 3 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=rnc PE=3 SV=1
Length = 245
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 47 KQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNR 106
+++GYTFK LLR A+TH S NN LG V++ +VS L + + DL R
Sbjct: 29 QKLGYTFKQPDLLREALTHRSLGFPNNERFEFLGDSVLNCAVSTLLFKRFPSLPEGDLTR 88
Query: 107 RVSETSNVEISCAVDGMHLGLQKVVRVSPKTNST----VPAVVCGAFRAIFGAIAVDTG 161
+ N + + LG+ +++ + + P+++ A AI GAI +++G
Sbjct: 89 LRANFVNQQALHRLASA-LGIGELILLGEGERKSGGHHRPSILANAVEAIIGAIYLESG 146
>sp|Q7UGZ7|RNC_RHOBA Ribonuclease 3 OS=Rhodopirellula baltica (strain SH1) GN=rnc PE=3
SV=2
Length = 266
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 36 SPFATA---LETLQKQIGYTFKSIGLLRRAMTHSSFSEE---NNRALGILGGYVIDTSVS 89
P+A A +E Q+ +GY F+ + LLR A+TH+S + +N L LG V+ +V
Sbjct: 25 EPYADAVAKIERCQEILGYDFRDLDLLRSALTHASGASHRLASNERLEFLGDSVLGLTVC 84
Query: 90 LRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQK---VVRVSPKTNSTVPAVVC 146
L N+ + S DL + S + SC LGL + V R + S ++V
Sbjct: 85 EWLFNEYPEYSEGDLTKIKSAVVSRR-SCGKVACKLGLDQCLIVGRGVTRNRSYPKSLVS 143
Query: 147 GAFRAIFGAIAVDTG 161
F A+ A+ +D G
Sbjct: 144 DVFEAVIAALYIDGG 158
>sp|Q4L5T5|RNC_STAHJ Ribonuclease 3 OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=rnc PE=3 SV=1
Length = 245
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 12/145 (8%)
Query: 28 NDQRFKTSSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-------NNRALGILG 80
N ++ + + F ++G+T+ +I L ++A +HSSF + +N L LG
Sbjct: 3 NPKKIEMVNDFQQQFAKKMNELGFTYSNIDLYQQAFSHSSFINDFNMDRLAHNERLEFLG 62
Query: 81 GYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV---RVSPKT 137
V++ +VS L +K D+ +L ++ T E S + + L +++ + KT
Sbjct: 63 DAVLELTVSRYLFDKHPDLPEGNLT-KMRATIVCEPSLVIFANKIELNQLILLGKGEEKT 121
Query: 138 NS-TVPAVVCGAFRAIFGAIAVDTG 161
T P++V AF A GA+ +D G
Sbjct: 122 GGRTRPSLVSDAFEAFVGALYLDQG 146
>sp|Q8Y0I1|RNC_RALSO Ribonuclease 3 OS=Ralstonia solanacearum (strain GMI1000) GN=rnc
PE=3 SV=1
Length = 256
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDIS 100
+LE LQ+++GY F LL++A+TH S + +N L LG +++ +V+ L +
Sbjct: 2 SLEALQQRLGYRFSKPELLQQALTHRSHNAMHNERLEFLGDSILNCAVADMLYGMFGKLD 61
Query: 101 PKDLNR----RVSETSNVEISCAV---DGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIF 153
DL+R V + + EI+ + D + LG ++ P+++ A AIF
Sbjct: 62 EGDLSRVRANLVKQQALYEIAQMLLLPDELRLGEGEL----KSGGFRRPSILADALEAIF 117
Query: 154 GAIAVDTG 161
GA+ +D G
Sbjct: 118 GAVFLDGG 125
>sp|Q8D305|RNC_WIGBR Ribonuclease 3 OS=Wigglesworthia glossinidia brevipalpis GN=rnc
PE=3 SV=1
Length = 226
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 11/123 (8%)
Query: 45 LQKQIGYTFKSIGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRLLNKDIDISPKDL 104
LQK++GY F + +L++A+TH SFS +NN L LG +++ +S L N +I L
Sbjct: 9 LQKKMGYLFHNNIILKQALTHRSFSSKNNERLEFLGDSILNYIISDALYNNFTNIPEGKL 68
Query: 105 NRR----VSETSNVEIS---CAVDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIA 157
++ V + EI+ C D + LG+ +V +S ++ A AI G I
Sbjct: 69 SQMRSYLVRGNTLAEIAREFCLGDYLILGIGEVKTGGKNRDS----ILSNAMEAIIGGIF 124
Query: 158 VDT 160
+D+
Sbjct: 125 LDS 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,841,118
Number of Sequences: 539616
Number of extensions: 2362298
Number of successful extensions: 5819
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 139
Number of HSP's that attempted gapping in prelim test: 5444
Number of HSP's gapped (non-prelim): 417
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)