Query 029991
Match_columns 184
No_of_seqs 172 out of 1132
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o2r_A Ribonuclease III; struc 100.0 5.9E-41 2E-45 265.4 13.0 144 35-180 21-169 (170)
2 3n3w_A Ribonuclease III; nucle 100.0 1.3E-38 4.6E-43 265.2 11.0 139 40-180 26-169 (248)
3 2nug_A Ribonuclease III, RNAse 100.0 1.5E-37 5.3E-42 254.1 15.3 135 41-179 3-140 (221)
4 3c4b_A Endoribonuclease dicer; 100.0 2.7E-37 9.4E-42 258.5 16.3 140 40-180 13-193 (265)
5 3rv1_A K. polysporus DCR1; RNA 100.0 3.3E-37 1.1E-41 256.4 12.2 140 43-183 86-245 (246)
6 1o0w_A Ribonuclease III, RNAse 100.0 7.1E-37 2.4E-41 255.0 9.4 141 38-180 17-171 (252)
7 2a11_A Ribonuclease III, RNAse 100.0 2.8E-36 9.5E-41 249.7 8.4 139 40-181 5-155 (242)
8 3rv0_A K. polysporus DCR1; RNA 100.0 9.6E-35 3.3E-39 251.7 12.1 137 42-180 85-242 (341)
9 2qvw_A GLP_546_48378_50642; di 100.0 3.7E-33 1.3E-37 262.3 15.4 135 39-180 592-754 (756)
10 2qvw_A GLP_546_48378_50642; di 99.9 6.9E-28 2.4E-32 226.5 9.1 119 59-180 319-439 (756)
11 1u61_A Hypothetical protein; s 99.9 1.3E-23 4.4E-28 160.6 11.4 101 72-175 11-127 (138)
12 2gsl_A Hypothetical protein; a 99.9 1E-21 3.4E-26 149.9 9.7 105 72-180 14-132 (137)
13 1ztd_A Hypothetical protein PF 91.0 1.6 5.5E-05 31.6 8.3 91 71-178 10-103 (133)
14 3iwf_A Transcription regulator 36.9 12 0.00041 26.1 1.2 42 87-131 21-65 (107)
15 2o3f_A Putative HTH-type trans 33.0 12 0.00041 26.2 0.7 41 88-131 26-69 (111)
16 2wh0_Q Pkcev3, protein kinase 26.7 54 0.0019 17.4 2.4 19 31-49 4-22 (31)
17 2pag_A Hypothetical protein; n 22.6 69 0.0023 23.0 3.2 23 33-55 18-40 (135)
No 1
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=100.00 E-value=5.9e-41 Score=265.42 Aligned_cols=144 Identities=30% Similarity=0.380 Sum_probs=131.0
Q ss_pred CCchHHHHHHHHHHhCCCCCCHHHHHHHHcCCCCCC-CcchHHHHhhHHHHHHHHHHHHHhhCCCCChhHHHHHHHhhcc
Q 029991 35 SSPFATALETLQKQIGYTFKSIGLLRRAMTHSSFSE-ENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSN 113 (184)
Q Consensus 35 ~~~~~~~l~~le~~lgy~F~~~~LL~~AlTh~S~~~-~~nerLefLGDaVL~l~vs~~l~~~~p~~~~g~ls~~r~~lvs 113 (184)
.+|.-+.+.+++++|||+|+|++|+.+||||+||.. .+|||||||||+||++++++++|.+||+.++|.|+.+|+.+||
T Consensus 21 ~~~~m~~l~~le~~lgy~F~d~~LL~~AlTH~S~~~~~~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs 100 (170)
T 3o2r_A 21 QSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVN 100 (170)
T ss_dssp ------CHHHHHHHHTCCCSSHHHHHHHTBCTTSSTTCCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSS
T ss_pred CCccHHHHHHHHHHhCCCCCCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHC
Confidence 344445599999999999999999999999999987 5999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhCccchhhcCCCCC----CCCcchHHhHHHHHHHHHhHhCCChHHHHHHHHHhhhhhhcc
Q 029991 114 VEISCAVDGMHLGLQKVVRVSPKTN----STVPAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRVHSGEVGK 180 (184)
Q Consensus 114 ~n~~La~ia~~lgL~~~i~~~~~~~----~~~~kvlad~fEAliGAIylD~G~~~~a~~~v~~~~~~~l~~ 180 (184)
|++|+.+|+++||++++++++++. +..++++||+|||+|||||+|+| +++|++|+.++|.|.+..
T Consensus 101 -~~~La~ia~~lgL~~~l~~~~~~~~~~~~~~~~ilad~fEAliGAiylD~G-~~~a~~~i~~~~~~~~~~ 169 (170)
T 3o2r_A 101 -EKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAG-FEFAKTIALRLIEKNFPQ 169 (170)
T ss_dssp -HHHHHHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHCTT
T ss_pred -HHHHHHHHHHcCcHHhhhcCcchhhcCCCCcchHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhc
Confidence 999999999999999999987542 56789999999999999999999 999999999999998764
No 2
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.3e-38 Score=265.18 Aligned_cols=139 Identities=30% Similarity=0.396 Sum_probs=130.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHcCCCCCC-CcchHHHHhhHHHHHHHHHHHHHhhCCCCChhHHHHHHHhhcccchhH
Q 029991 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSE-ENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISC 118 (184)
Q Consensus 40 ~~l~~le~~lgy~F~~~~LL~~AlTh~S~~~-~~nerLefLGDaVL~l~vs~~l~~~~p~~~~g~ls~~r~~lvs~n~~L 118 (184)
+.+.+|+++|||+|+|++||.+||||+||.. .+|||||||||+||+++++++||.+||+.++|.|+.+|+.+|| |++|
T Consensus 26 ~~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs-~~~L 104 (248)
T 3n3w_A 26 KNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVN-EKSF 104 (248)
T ss_dssp TTHHHHHHHHTCCCSSHHHHHHHTBCTTSBTTBCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHS-HHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHhcCcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHC-HHHH
Confidence 3499999999999999999999999999987 5999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHhhCccchhhcCCCC----CCCCcchHHhHHHHHHHHHhHhCCChHHHHHHHHHhhhhhhcc
Q 029991 119 AVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRVHSGEVGK 180 (184)
Q Consensus 119 a~ia~~lgL~~~i~~~~~~----~~~~~kvlad~fEAliGAIylD~G~~~~a~~~v~~~~~~~l~~ 180 (184)
+.+|.++||++++++++++ .+..++++||+|||+|||||+|+| ++.|++|+.+++.+.+..
T Consensus 105 a~~a~~lgL~~~l~~~~~e~~~~g~~~~~~lad~fEAliGAiyld~G-~~~~~~~i~~~~~~~l~~ 169 (248)
T 3n3w_A 105 AKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAG-FEFAKTIALRLIEKNFPQ 169 (248)
T ss_dssp HHHHHHTTGGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHcCcHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHHHCC-hHHHHHHHHHHHHHHHHH
Confidence 9999999999999988753 256789999999999999999999 899999999999998764
No 3
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=100.00 E-value=1.5e-37 Score=254.13 Aligned_cols=135 Identities=24% Similarity=0.392 Sum_probs=128.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHcCCCCCCC-cchHHHHhhHHHHHHHHHHHHHhhCCCCChhHHHHHHHhhcccchhHH
Q 029991 41 ALETLQKQIGYTFKSIGLLRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCA 119 (184)
Q Consensus 41 ~l~~le~~lgy~F~~~~LL~~AlTh~S~~~~-~nerLefLGDaVL~l~vs~~l~~~~p~~~~g~ls~~r~~lvs~n~~La 119 (184)
.+.+|+++|||+|+|++||.+||||+||..+ ||||||||||+||++++++++|.+||+.++|.|+.+|+.+|| |.+|+
T Consensus 3 ~~~~l~~~lg~~f~~~~ll~~AlTh~S~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~-~~~la 81 (221)
T 2nug_A 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLIS-EEFFN 81 (221)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTS-HHHHH
T ss_pred HHHHHHHHhCCCcCCHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHC-HHHHH
Confidence 4788999999999999999999999999876 999999999999999999999999999999999999999999 99999
Q ss_pred HHHHhhCccchhhcCCCCCCCCcchHHhHHHHHHHHHhHhCCChHH--HHHHHHHhhhhhhc
Q 029991 120 VDGMHLGLQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTGKCDD--AGDVFLRVHSGEVG 179 (184)
Q Consensus 120 ~ia~~lgL~~~i~~~~~~~~~~~kvlad~fEAliGAIylD~G~~~~--a~~~v~~~~~~~l~ 179 (184)
.+|.++||+++++.++++.. ++++||+|||+|||||+|+| ++. +++|+.+++.+.+.
T Consensus 82 ~~a~~l~l~~~l~~~~~~~~--~~~lad~~EAliGAiyld~g-~~~~~~~~~i~~~~~~~~~ 140 (221)
T 2nug_A 82 LLAQKLELHKFIRIKRGKIN--ETIIGDVFEALWAAVYIDSG-RDANFTRELFYKLFKEDIL 140 (221)
T ss_dssp HHHHTTTGGGTCBSCTTCCC--HHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcChHHhhccCCCccc--chHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHh
Confidence 99999999999999887643 99999999999999999999 788 99999999988775
No 4
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=100.00 E-value=2.7e-37 Score=258.55 Aligned_cols=140 Identities=24% Similarity=0.345 Sum_probs=125.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHcCCCCCCC----cchHHHHhhHHHHHHHHHHHHHhhCCCCChhHHHHHHHhhcccc
Q 029991 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSEE----NNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVE 115 (184)
Q Consensus 40 ~~l~~le~~lgy~F~~~~LL~~AlTh~S~~~~----~nerLefLGDaVL~l~vs~~l~~~~p~~~~g~ls~~r~~lvs~n 115 (184)
..+.+|+++|||+|+|+.||.+||||+||..+ ||||||||||+||+++|++|||.+||+.++|.|+.+|+.+|| |
T Consensus 13 ~~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~-~ 91 (265)
T 3c4b_A 13 SGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVN-N 91 (265)
T ss_dssp TTHHHHHHHHTCCCSSHHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSS-H
T ss_pred HHHHHHHHHhCCccCCHHHHHHHhcCcCcCCCCCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-h
Confidence 34789999999999999999999999999754 899999999999999999999999999999999999999999 9
Q ss_pred hhHHHHHHhhCccchhhcCC-----------------C-------------------CCCCCcchHHhHHHHHHHHHhHh
Q 029991 116 ISCAVDGMHLGLQKVVRVSP-----------------K-------------------TNSTVPAVVCGAFRAIFGAIAVD 159 (184)
Q Consensus 116 ~~La~ia~~lgL~~~i~~~~-----------------~-------------------~~~~~~kvlad~fEAliGAIylD 159 (184)
++|+.+|.++||++++++.+ + ..+..++++||+|||+|||||+|
T Consensus 92 ~~La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~laD~~EAliGAiylD 171 (265)
T 3c4b_A 92 TIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMD 171 (265)
T ss_dssp HHHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHHhhhcchhhhhhcccccchHHHHHHHHHhhheeee
Confidence 99999999999999987321 0 11357899999999999999999
Q ss_pred CCC-hHHHHHHHHHhhhhhhcc
Q 029991 160 TGK-CDDAGDVFLRVHSGEVGK 180 (184)
Q Consensus 160 ~G~-~~~a~~~v~~~~~~~l~~ 180 (184)
+|. ++.+++|+.+++.|.+..
T Consensus 172 ~G~~~~~~~~~i~~~~~~~i~~ 193 (265)
T 3c4b_A 172 SGMSLEVVWQVYYPMMQPLIEK 193 (265)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHh
Confidence 993 399999999999987753
No 5
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=3.3e-37 Score=256.38 Aligned_cols=140 Identities=18% Similarity=0.169 Sum_probs=120.8
Q ss_pred HHHHHHhCCC-CCCHHHHHHHHcCCCCCC------------CcchHHHHhhHHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 029991 43 ETLQKQIGYT-FKSIGLLRRAMTHSSFSE------------ENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVS 109 (184)
Q Consensus 43 ~~le~~lgy~-F~~~~LL~~AlTh~S~~~------------~~nerLefLGDaVL~l~vs~~l~~~~p~~~~g~ls~~r~ 109 (184)
..+|++|||+ |+|++|+.+||||+||.. .+|||||||||+||++++++++|.+||+.++|.|+.+|+
T Consensus 86 ~~lE~~lgY~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs 165 (246)
T 3rv1_A 86 TDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKE 165 (246)
T ss_dssp CGGGGGCSSCCCSCHHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHhcCCCCcCCHHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Confidence 4578899999 999999999999999964 279999999999999999999999999999999999999
Q ss_pred hhcccchhHHHHHHhhCccchhhcCCCCC-----CCCcchHHhHHHHHHHHHhHhC-CC-hHHHHHHHHHhhhhhhcccC
Q 029991 110 ETSNVEISCAVDGMHLGLQKVVRVSPKTN-----STVPAVVCGAFRAIFGAIAVDT-GK-CDDAGDVFLRVHSGEVGKAL 182 (184)
Q Consensus 110 ~lvs~n~~La~ia~~lgL~~~i~~~~~~~-----~~~~kvlad~fEAliGAIylD~-G~-~~~a~~~v~~~~~~~l~~~~ 182 (184)
.+|| |.+|+.+|.++||+++++++.+.. ...++++||+|||+|||||+|+ |. ++.+++|+.+++.|.+.+.-
T Consensus 166 ~lVs-n~~La~iA~~lgL~~~l~~~~g~~~~~~~~~~~~ilAD~fEAlIGAIylD~~g~~l~~v~~~l~~L~~p~l~e~~ 244 (246)
T 3rv1_A 166 SIVN-NNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVQAYIGALVIDRFGTEFLDIKEWLEELSEKKLAKSS 244 (246)
T ss_dssp HHHS-HHHHHHHHHHTTSHHHHCSSCC-----------CHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHHTHHHHHC--
T ss_pred HHhC-HHHHHHHHHHCCcHHHHhhcCCHhhhccCcccccHHHHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 9999 999999999999999999753321 2468999999999999999999 53 89999999999999998754
Q ss_pred C
Q 029991 183 P 183 (184)
Q Consensus 183 ~ 183 (184)
|
T Consensus 245 ~ 245 (246)
T 3rv1_A 245 Q 245 (246)
T ss_dssp -
T ss_pred C
Confidence 3
No 6
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=100.00 E-value=7.1e-37 Score=254.98 Aligned_cols=141 Identities=28% Similarity=0.351 Sum_probs=130.6
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHcCCCCCCC----------cchHHHHhhHHHHHHHHHHHHHhhCCCCChhHHHHH
Q 029991 38 FATALETLQKQIGYTFKSIGLLRRAMTHSSFSEE----------NNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRR 107 (184)
Q Consensus 38 ~~~~l~~le~~lgy~F~~~~LL~~AlTh~S~~~~----------~nerLefLGDaVL~l~vs~~l~~~~p~~~~g~ls~~ 107 (184)
.+..+.+|+++|||+|+|++||.+||||+||..+ +|||||||||+||+++++++||.+||+.++|.|+.+
T Consensus 17 ~~~~~~~l~~~lgy~f~~~~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~ 96 (252)
T 1o0w_A 17 ERKIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARV 96 (252)
T ss_dssp HHHHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3567999999999999999999999999998542 899999999999999999999999999999999999
Q ss_pred HHhhcccchhHHHHHHhhCccchhhcCCCC----CCCCcchHHhHHHHHHHHHhHhCCChHHHHHHHHHhhhhhhcc
Q 029991 108 VSETSNVEISCAVDGMHLGLQKVVRVSPKT----NSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRVHSGEVGK 180 (184)
Q Consensus 108 r~~lvs~n~~La~ia~~lgL~~~i~~~~~~----~~~~~kvlad~fEAliGAIylD~G~~~~a~~~v~~~~~~~l~~ 180 (184)
|+.+|| |.+|+.+|.++||++++++++++ .+..++++||+|||+|||||+|+| ++.+++|+.+++.+.+..
T Consensus 97 r~~lV~-~~~la~~a~~lgL~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g-~~~~~~~i~~~~~~~~~~ 171 (252)
T 1o0w_A 97 KSAAAS-EEVLAMVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQG-YEKIKELFEQEFEFYIEK 171 (252)
T ss_dssp HHHHTS-HHHHHHHHHHTTHHHHCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-HHHHHHHHHHcCcHHhhccCchhhhcCCCCCccHHHhHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999999987653 245789999999999999999999 899999999999988754
No 7
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.8e-36 Score=249.72 Aligned_cols=139 Identities=24% Similarity=0.334 Sum_probs=128.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHcCCCCCC-----CcchHHHHhhHHHHHHHHHHHHHhhCCCCChhHHHHHHHhhccc
Q 029991 40 TALETLQKQIGYTFKSIGLLRRAMTHSSFSE-----ENNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNV 114 (184)
Q Consensus 40 ~~l~~le~~lgy~F~~~~LL~~AlTh~S~~~-----~~nerLefLGDaVL~l~vs~~l~~~~p~~~~g~ls~~r~~lvs~ 114 (184)
..+..|+++|||+| |++||.+||||+||.. .||||||||||+||++++++++|.+||+.++|.|+.+|+.+||
T Consensus 5 ~~l~~l~~~lgy~f-~~~ll~~AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~- 82 (242)
T 2a11_A 5 RSRQPLLDALGVDL-PDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVN- 82 (242)
T ss_dssp CCCHHHHHHHTSCC-CHHHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhC-
Confidence 34678999999999 9999999999999853 3899999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhh---CccchhhcCCCCC----CCCcchHHhHHHHHHHHHhHhCCChHHHHHHHHHhhhhhhccc
Q 029991 115 EISCAVDGMHL---GLQKVVRVSPKTN----STVPAVVCGAFRAIFGAIAVDTGKCDDAGDVFLRVHSGEVGKA 181 (184)
Q Consensus 115 n~~La~ia~~l---gL~~~i~~~~~~~----~~~~kvlad~fEAliGAIylD~G~~~~a~~~v~~~~~~~l~~~ 181 (184)
|++|+.+|.++ ||++++++++++. +..++++||+|||+|||||+|+| ++.+++|+.+++.+.+...
T Consensus 83 ~~~la~~a~~l~~~gL~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g-~~~~~~~i~~~~~~~~~~~ 155 (242)
T 2a11_A 83 TQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHG-MEKAREVILRLFGPLLDAA 155 (242)
T ss_dssp HHHHHHHHHHHSSSCSGGGCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHhhhhChHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHh
Confidence 99999999999 9999999887542 45789999999999999999999 8999999999999887654
No 8
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=9.6e-35 Score=251.73 Aligned_cols=137 Identities=18% Similarity=0.150 Sum_probs=123.8
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHHcCCCCCCC------------cchHHHHhhHHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 029991 42 LETLQKQIGYT-FKSIGLLRRAMTHSSFSEE------------NNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRV 108 (184)
Q Consensus 42 l~~le~~lgy~-F~~~~LL~~AlTh~S~~~~------------~nerLefLGDaVL~l~vs~~l~~~~p~~~~g~ls~~r 108 (184)
...+|++|||+ |+|++||.+||||+||..+ +|||||||||+||+++++++||.+||+.++|.|+.+|
T Consensus 85 ~~~lE~~igy~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr 164 (341)
T 3rv0_A 85 NTDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMK 164 (341)
T ss_dssp CCTTGGGCSSCCCSCHHHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred hhHHHHhcCCCCcCCHHHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHH
Confidence 44688999999 9999999999999999752 7999999999999999999999999999999999999
Q ss_pred HhhcccchhHHHHHHhhCccchhhcCCCCC-----CCCcchHHhHHHHHHHHHhHhC---CChHHHHHHHHHhhhhhhcc
Q 029991 109 SETSNVEISCAVDGMHLGLQKVVRVSPKTN-----STVPAVVCGAFRAIFGAIAVDT---GKCDDAGDVFLRVHSGEVGK 180 (184)
Q Consensus 109 ~~lvs~n~~La~ia~~lgL~~~i~~~~~~~-----~~~~kvlad~fEAliGAIylD~---G~~~~a~~~v~~~~~~~l~~ 180 (184)
+.+|| |.+|+.+|.++||+++++++.+.. ...++++||+|||+|||||+|+ | ++.|++|+.+++.+.+..
T Consensus 165 ~~lVs-~~~La~iA~~lgL~~~l~~~~g~~~~~~~~~~~~ilaD~fEAlIGAIylD~~~~G-~~~a~~fi~~l~~~~l~~ 242 (341)
T 3rv0_A 165 ESIVN-NNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVIDRFGTE-FLDIKEWLEELSEKKLAK 242 (341)
T ss_dssp HHHHS-HHHHHHHHHHTTTTTTTCCSSCCC----CCHHHHHHHHHHHHHHHHHHHHHCSST-THHHHHHHHHHTHHHHHC
T ss_pred HHHhC-HHHHHHHHHHcCcHHHhhhcCChhhhccCCccccHHHHHHHHHHHHHhhcCccCC-HHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999753322 1357899999999999999999 7 899999999999988754
No 9
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=100.00 E-value=3.7e-33 Score=262.26 Aligned_cols=135 Identities=21% Similarity=0.213 Sum_probs=129.2
Q ss_pred HHHHHHHHHHhCCCCCC--------------------------HHHHHHHHcCCCCCCCcchHHHHhhHHHHHHHHHHHH
Q 029991 39 ATALETLQKQIGYTFKS--------------------------IGLLRRAMTHSSFSEENNRALGILGGYVIDTSVSLRL 92 (184)
Q Consensus 39 ~~~l~~le~~lgy~F~~--------------------------~~LL~~AlTh~S~~~~~nerLefLGDaVL~l~vs~~l 92 (184)
...+..+|++|||+|+| ++||.+||||+| |||||||||+||++++++++
T Consensus 592 ~~~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~AlTH~S-----neRLEfLGDaVL~l~vs~~L 666 (756)
T 2qvw_A 592 SKVLALYEKILAYESSGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALTPHV-----YQKLELLGDAFLKCSLALHL 666 (756)
T ss_dssp HHHHHHHHHHHSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHHSTGG-----GHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCCccCcchhhhHhhhhhhhccccccccccccHHHHHHHhcCcc-----chHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999 899999999999 89999999999999999999
Q ss_pred HhhCCCCChhHHHHHHHhhcccchhHHHHHHhhC--ccchhhcCCCCCCCCcchHHhHHHHHHHHHhHhCCChHHHHHHH
Q 029991 93 LNKDIDISPKDLNRRVSETSNVEISCAVDGMHLG--LQKVVRVSPKTNSTVPAVVCGAFRAIFGAIAVDTGKCDDAGDVF 170 (184)
Q Consensus 93 ~~~~p~~~~g~ls~~r~~lvs~n~~La~ia~~lg--L~~~i~~~~~~~~~~~kvlad~fEAliGAIylD~G~~~~a~~~v 170 (184)
|.+||+.++|.|+++|+.+|| |++|+.+|+++| |+++++.++++....++++||+|||+|||||+|+| +++|++|+
T Consensus 667 ~~~~p~~~eG~Lt~lrs~lV~-~~~La~~a~~lg~~L~~~l~~~~~e~~~~~kilaD~~EAliGAiylD~G-~~~a~~~v 744 (756)
T 2qvw_A 667 HALHPTLTEGALTRMRQSAET-NSVLGRLTKRFPSVVSEVIIESHPKIQPDSKVYGDTFEAILAAILLACG-EEAAGAFV 744 (756)
T ss_dssp HHHCTTCCHHHHHHHHHHTTS-HHHHHHHHHTSCTHHHHHHHHHSTTCCTTCSHHHHHHHHHHHHHHHHHC-HHHHHHHH
T ss_pred HHhCCCCChHHHHHHHHHHhC-ChHHHHHHHHhcccHHHHHhcCchhhcCCccHHHHHHHHHHHHHHHhCC-HHHHHHHH
Confidence 999999999999999999999 999999999999 99999999887778899999999999999999999 89999999
Q ss_pred HHhhhhhhcc
Q 029991 171 LRVHSGEVGK 180 (184)
Q Consensus 171 ~~~~~~~l~~ 180 (184)
.+++.+.+..
T Consensus 745 ~~~~~~~l~~ 754 (756)
T 2qvw_A 745 REHVLPQVVA 754 (756)
T ss_dssp HHHTGGGCCC
T ss_pred HHHHHHHhhc
Confidence 9999998754
No 10
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.94 E-value=6.9e-28 Score=226.54 Aligned_cols=119 Identities=18% Similarity=0.131 Sum_probs=110.0
Q ss_pred HHHHHcCCCCCCC-cchHHHHhhHHHHHHHHHHHHHhhCCCCChhHHHHHHHhhcccchhHHHHHHhhCccchhhcCCCC
Q 029991 59 LRRAMTHSSFSEE-NNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKT 137 (184)
Q Consensus 59 L~~AlTh~S~~~~-~nerLefLGDaVL~l~vs~~l~~~~p~~~~g~ls~~r~~lvs~n~~La~ia~~lgL~~~i~~~~~~ 137 (184)
+.+||||+||... ||||||||||+||+++++++||.+||+.++|+|+.+|+.+|| |++|+.+|+++||+++++.++++
T Consensus 319 ~~~AlTh~s~~~~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVs-n~~La~~A~~lgL~~~l~~~~~e 397 (756)
T 2qvw_A 319 WRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVR-NEALNYLVQTLGLPQLAEFSNNL 397 (756)
T ss_dssp TEEECBGGGBCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHS-HHHHHHHHHHTTCTTTCBCCSCC
T ss_pred hhhhcccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhC-chHHHHHHHHcChHHHhccCCCC
Confidence 3459999998765 999999999999999999999999999999999999999999 99999999999999999998876
Q ss_pred CCCCcchHHhHHHHHHHHHhHh-CCChHHHHHHHHHhhhhhhcc
Q 029991 138 NSTVPAVVCGAFRAIFGAIAVD-TGKCDDAGDVFLRVHSGEVGK 180 (184)
Q Consensus 138 ~~~~~kvlad~fEAliGAIylD-~G~~~~a~~~v~~~~~~~l~~ 180 (184)
. ..++++||+|||+|||||+| +| ++.|++|+.+++.+.+..
T Consensus 398 ~-~~~~ilaD~~EAliGAiylD~~G-~~~a~~~v~~~~~~~~~~ 439 (756)
T 2qvw_A 398 V-AKSKTWADMYEEIVGSIFTGPNG-IYGCEEFLAKTLMSPEHS 439 (756)
T ss_dssp ---CCCCHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHBCGGGS
T ss_pred C-CcccHHHhHHHHHhCcccccccC-hHHHHHHHHHHHHhhhhc
Confidence 4 57899999999999999999 99 999999999999887754
No 11
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.90 E-value=1.3e-23 Score=160.63 Aligned_cols=101 Identities=23% Similarity=0.266 Sum_probs=93.5
Q ss_pred cchHHHHhhHHHHHHHHHHHHHhhCCCCChhHHHHHHHhhcccchhHHHHHHhh----Ccc----chhhcCCCCC----C
Q 029991 72 NNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHL----GLQ----KVVRVSPKTN----S 139 (184)
Q Consensus 72 ~nerLefLGDaVL~l~vs~~l~~~~p~~~~g~ls~~r~~lvs~n~~La~ia~~l----gL~----~~i~~~~~~~----~ 139 (184)
|.+|||||||+|++++|++|||.+ |+.++|.|+++|+.+|| .++++.+++++ +|. ++++.++++. +
T Consensus 11 ~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~-a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~~~~~~ 88 (138)
T 1u61_A 11 NSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVS-AKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSGTVP 88 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHS-HHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCSSCCC
T ss_pred CHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcC-HHHHHHHHHHhhcccCCChHHHHHhhcCCCcccCCCC
Confidence 899999999999999999999999 88899999999999999 89999999999 998 7999887753 3
Q ss_pred CCcch----HHhHHHHHHHHHhHhCCChHHHHHHHHHhhh
Q 029991 140 TVPAV----VCGAFRAIFGAIAVDTGKCDDAGDVFLRVHS 175 (184)
Q Consensus 140 ~~~kv----lad~fEAliGAIylD~G~~~~a~~~v~~~~~ 175 (184)
....+ +||.|||+|||+|+|+| ++.+++|+.+++.
T Consensus 89 k~~si~~Yr~A~~fEALiGalYLd~g-~er~~~~i~~~~~ 127 (138)
T 1u61_A 89 KNTDVQTYRHSTAFEALIGYHHLLNN-RERLDEIVYKAIA 127 (138)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred CCCchhhhhhhhHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 45678 99999999999999999 8999999988875
No 12
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.86 E-value=1e-21 Score=149.94 Aligned_cols=105 Identities=17% Similarity=0.135 Sum_probs=90.9
Q ss_pred cchHHHHhhHHHHHHHHHHHHHhhCCCCChhHHHHHHHhhcccchhHHHHHHhhC--cc----chhhcCCCCC----CCC
Q 029991 72 NNRALGILGGYVIDTSVSLRLLNKDIDISPKDLNRRVSETSNVEISCAVDGMHLG--LQ----KVVRVSPKTN----STV 141 (184)
Q Consensus 72 ~nerLefLGDaVL~l~vs~~l~~~~p~~~~g~ls~~r~~lvs~n~~La~ia~~lg--L~----~~i~~~~~~~----~~~ 141 (184)
|.+|||||||||++++|+++++.+ |+ ++|+++++++.+|| .++++.++++++ |. ++++.+++.. +..
T Consensus 14 ~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~-a~aqa~~~~~l~~~Lte~E~~~~rrGrna~~~~~~k~ 90 (137)
T 2gsl_A 14 SGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVN-AKYQSLIYKKIINDLDEEFKVIGKRAKNSNIKTFPRS 90 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHS-HHHHHHHHHHHGGGSCHHHHHHHHHHHC--CCSCCSS
T ss_pred CHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCHHHHHHHHhcccccCCCCCCC
Confidence 899999999999999999999999 88 99999999999999 899999999997 77 6777665532 234
Q ss_pred cc----hHHhHHHHHHHHHhHhCCChHHHHHHHHHhhhhhhcc
Q 029991 142 PA----VVCGAFRAIFGAIAVDTGKCDDAGDVFLRVHSGEVGK 180 (184)
Q Consensus 142 ~k----vlad~fEAliGAIylD~G~~~~a~~~v~~~~~~~l~~ 180 (184)
.+ .+||.|||+|||+|+|+| ++.+++|+...+.-.+.+
T Consensus 91 ~si~~Y~~At~fEALiGaLYLd~~-~erl~~ll~~~~~~~~~~ 132 (137)
T 2gsl_A 91 CTVMEYKEATALEAIIGAMYLLKK-EEEIKKIINIVIKGELEH 132 (137)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTC--
T ss_pred CChHHHHHhhHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHh
Confidence 55 499999999999999999 899999999998766543
No 13
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=91.01 E-value=1.6 Score=31.58 Aligned_cols=91 Identities=19% Similarity=0.072 Sum_probs=64.4
Q ss_pred CcchHHHHhhHHHHHHHHHHHHHh--hCCCCChhHHHHHHHhhcccchhHHHHHHhhCccchhhcCCCCCCCCcchHHhH
Q 029991 71 ENNRALGILGGYVIDTSVSLRLLN--KDIDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVVRVSPKTNSTVPAVVCGA 148 (184)
Q Consensus 71 ~~nerLefLGDaVL~l~vs~~l~~--~~p~~~~g~ls~~r~~lvs~n~~La~ia~~lgL~~~i~~~~~~~~~~~kvlad~ 148 (184)
+.-..|+-+||++++++.+--|.+ -+|.-. -|- |.+|+.--..-||.+.+. +...---+|.
T Consensus 10 ~tdK~LakfGDSLvNfl~SlALse~lG~Ptg~----------rVP-naSLaiale~agL~~~~p------R~DKh~kGd~ 72 (133)
T 1ztd_A 10 EIDKGLAKFGDSLINFLYSLALTEFLGKPTGD----------RVP-NASLAIALELTGLSKNLR------RVDKHAKGDY 72 (133)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCC-HHHHHHHHHHHTGGGGCC------GGGTTCHHHH
T ss_pred hhcchHHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCC-ChHHHHHHHHhhhhhcCC------cccccCccHH
Confidence 345679999999999999877654 344322 244 677777667778887772 2223357899
Q ss_pred HHHHHHHHhHhCCC-hHHHHHHHHHhhhhhh
Q 029991 149 FRAIFGAIAVDTGK-CDDAGDVFLRVHSGEV 178 (184)
Q Consensus 149 fEAliGAIylD~G~-~~~a~~~v~~~~~~~l 178 (184)
.||+|+=-|+.+-- .+++-+++.+-+.+.+
T Consensus 73 aEA~iAyAWleG~is~eEaveilk~nl~~dv 103 (133)
T 1ztd_A 73 AEALIAKAWLMGLISEREAVEIIKKNLYPEV 103 (133)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHhccccHHHHHHHHHhcCcHhh
Confidence 99999999999764 7777788776665443
No 14
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=36.88 E-value=12 Score=26.14 Aligned_cols=42 Identities=7% Similarity=0.073 Sum_probs=28.5
Q ss_pred HHHHHHHhhC---CCCChhHHHHHHHhhcccchhHHHHHHhhCccchh
Q 029991 87 SVSLRLLNKD---IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV 131 (184)
Q Consensus 87 ~vs~~l~~~~---p~~~~g~ls~~r~~lvs~n~~La~ia~~lgL~~~i 131 (184)
-+++|+.++. +..+..++. ...-|| ..+..+.++++|...|-
T Consensus 21 ~ia~yil~~~~~~~~~si~elA--~~~~vS-~aTv~Rf~kkLGf~gf~ 65 (107)
T 3iwf_A 21 KIAQFILNYPHKVVNMTSQEIA--NQLETS-STSIIRLSKKVTPGGFN 65 (107)
T ss_dssp HHHHHHHHCHHHHTTCCHHHHH--HHHTSC-HHHHHHHHHHHSTTHHH
T ss_pred HHHHHHHhCHHHHHHCCHHHHH--HHHCCC-HHHHHHHHHHhCCCCHH
Confidence 3555655543 344444443 456788 89999999999998873
No 15
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=33.04 E-value=12 Score=26.17 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=27.4
Q ss_pred HHHHHHhhC---CCCChhHHHHHHHhhcccchhHHHHHHhhCccchh
Q 029991 88 VSLRLLNKD---IDISPKDLNRRVSETSNVEISCAVDGMHLGLQKVV 131 (184)
Q Consensus 88 vs~~l~~~~---p~~~~g~ls~~r~~lvs~n~~La~ia~~lgL~~~i 131 (184)
+++|+.++. +.++..++. +..-|| ..+..+.++++|+..|-
T Consensus 26 ia~yil~~~~~~~~~si~elA--~~~~vS-~aTv~Rf~kklG~~gf~ 69 (111)
T 2o3f_A 26 LADYILAHPHXAIESTVNEIS--ALANSS-DAAVIRLCXSLGLKGFQ 69 (111)
T ss_dssp HHHHHHHCHHHHHTCCHHHHH--HHTTCC-HHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHChHHHHhcCHHHHH--HHHCCC-HHHHHHHHHHcCCCCHH
Confidence 555555543 234444443 456788 89999999999998763
No 16
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=26.69 E-value=54 Score=17.45 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=15.5
Q ss_pred cCCCCCchHHHHHHHHHHh
Q 029991 31 RFKTSSPFATALETLQKQI 49 (184)
Q Consensus 31 ~~~~~~~~~~~l~~le~~l 49 (184)
+..|++|-++++.++++.|
T Consensus 4 ksaptspcdqeikelenni 22 (31)
T 2wh0_Q 4 KSAPTSPCDQEIKELENNI 22 (31)
T ss_pred ccCCCCchHHHHHHHHHHH
Confidence 3467889999999999876
No 17
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1
Probab=22.62 E-value=69 Score=23.04 Aligned_cols=23 Identities=13% Similarity=0.067 Sum_probs=19.8
Q ss_pred CCCCchHHHHHHHHHHhCCCCCC
Q 029991 33 KTSSPFATALETLQKQIGYTFKS 55 (184)
Q Consensus 33 ~~~~~~~~~l~~le~~lgy~F~~ 55 (184)
....|.++++.++|+.||++|.+
T Consensus 18 ~~~~~t~e~I~~~E~~Lgi~fP~ 40 (135)
T 2pag_A 18 PLELPDEDQLVEIEEQLFINIPF 40 (135)
T ss_dssp CCCCCCHHHHHHHHHHHTCCCCH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCH
Confidence 45677899999999999999964
Done!