BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029993
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 86/130 (66%), Gaps = 3/130 (2%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+IISPTREL+ Q + V + + D + L++GG ++K + ++I N+L+ TPGRL
Sbjct: 101 LIISPTRELAYQTFEVLRK-VGKNHDFSAGLIIGGKDLKHEAERIN--NINILVCTPGRL 157
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
M+ +L +LVLDEADR+LDMGF ++ +I LPK R+T LFSATQT++V+
Sbjct: 158 LQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVK 217
Query: 123 ELSKAGLRNP 132
+L++ L+NP
Sbjct: 218 DLARLSLKNP 227
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 83/128 (64%), Gaps = 2/128 (1%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+I+SPTREL+ Q + V + ++ L++GG A+ +K+ G N+++ TPGRL
Sbjct: 130 LILSPTRELAMQTFGVLKELMTHHVHTYG-LIMGGSNRSAEAQKLGN-GINIIVATPGRL 187
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
D M+ ++NL LV+DEADR+LD+GF++++ II LP R+T LFSATQT VE
Sbjct: 188 LDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVE 247
Query: 123 ELSKAGLR 130
+L++ L+
Sbjct: 248 DLARISLK 255
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 90/139 (64%), Gaps = 2/139 (1%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60
++++PTREL+ QI + S++ V+S ++VGG++ + + ++ +++I TPG
Sbjct: 113 FALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKK-PHIIIATPG 170
Query: 61 RLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL D +E + R L LV+DEADR+L+M F+ ++ I+ +P+ R+T LFSAT T+
Sbjct: 171 RLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKK 230
Query: 121 VEELSKAGLRNPVRIEVRA 139
V++L +A L+NPV+ V +
Sbjct: 231 VQKLQRAALKNPVKCAVSS 249
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 85/131 (64%), Gaps = 9/131 (6%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+ ++++PTREL+ QIY A+ F S V+ ++ GG ++ ++ +E G +LL+ TPG
Sbjct: 103 ISLVLAPTRELAVQIYEEARKF-SYRSRVRPCVVYGGADIGQQIRDLER-GCHLLVATPG 160
Query: 61 RLYDIMERMDV-LDFRNLVILVLDEADRLLDMGFQKQISYIISR---LPK-LRRTGLFSA 115
RL D+MER + LDF LVLDEADR+LDMGF+ QI I+ + PK +R T +FSA
Sbjct: 161 RLVDMMERGKIGLDF--CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSA 218
Query: 116 TQTEAVEELSK 126
T + ++ L++
Sbjct: 219 TFPKEIQMLAR 229
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 84/142 (59%), Gaps = 8/142 (5%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD---VKSMLLVGGVEVKADVKKIEEEGANLLIGT 58
++++PTREL+ QI Q + L D +GG V+A+V+K++ E ++++GT
Sbjct: 85 ALVLAPTRELAQQI----QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGT 140
Query: 59 PGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118
PGR++D++ R L + + + VLDEAD +L GF+ QI I +L + L SAT
Sbjct: 141 PGRVFDMLNRR-YLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMP 199
Query: 119 EAVEELSKAGLRNPVRIEVRAE 140
V E++K +R+P+RI V+ E
Sbjct: 200 SDVLEVTKKFMRDPIRILVKKE 221
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 84/142 (59%), Gaps = 8/142 (5%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD---VKSMLLVGGVEVKADVKKIEEEGANLLIGT 58
++++PTREL+ QI Q + L D +GG V+A+V+K++ E ++++GT
Sbjct: 111 ALVLAPTRELAQQI----QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGT 166
Query: 59 PGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118
PGR++D++ R L + + + VLDEAD +L GF+ QI I +L + L SAT
Sbjct: 167 PGRVFDMLNRR-YLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMP 225
Query: 119 EAVEELSKAGLRNPVRIEVRAE 140
V E++K +R+P+RI V+ E
Sbjct: 226 SDVLEVTKKFMRDPIRILVKKE 247
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
++++PTREL+ Q+ VA + +KS + GG ++ +E G + I TPGRL
Sbjct: 120 LVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLER-GVEICIATPGRL 177
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
D +E + R LVLDEADR+LDMGF+ QI I+ ++ R+T ++SAT + V
Sbjct: 178 IDFLE-CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 236
Query: 123 ELSKAGLRNPVRIEVRA 139
+L++ L++ + I + A
Sbjct: 237 QLAEDFLKDYIHINIGA 253
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
++++PTREL+ Q+ VA + +KS + GG ++ +E G + I TPGRL
Sbjct: 106 LVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLER-GVEICIATPGRL 163
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
D +E + R LVLDEADR+LDMGF+ QI I+ ++ R+T ++SAT + V
Sbjct: 164 IDFLE-CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 222
Query: 123 ELSKAGLRNPVRIEVRA 139
+L++ L++ + I + A
Sbjct: 223 QLAEDFLKDYIHINIGA 239
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 86/134 (64%), Gaps = 9/134 (6%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+I++PTREL+ QI +Q F P ++S ++ GG + + +++++ G +LL+ TPGRL
Sbjct: 104 LILAPTRELAIQILSESQKFSLNTP-LRSCVVYGGADTHSQIREVQM-GCHLLVATPGRL 161
Query: 63 YDIMERMDV-LDFRNLVILVLDEADRLLDMGFQKQISYII--SRLPK--LRRTGLFSATQ 117
D +E+ + L+F + VLDEADR+LDMGF+ QI II S +P R+T +FSAT
Sbjct: 162 VDFIEKNKISLEFCKYI--VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATF 219
Query: 118 TEAVEELSKAGLRN 131
+ +++L+ L N
Sbjct: 220 PKEIQKLAADFLYN 233
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 83/142 (58%), Gaps = 8/142 (5%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD---VKSMLLVGGVEVKADVKKIEEEGANLLIGT 58
++++PTREL+ QI Q I L D +GG V+ +++K++ E ++++GT
Sbjct: 101 ALVLAPTRELAQQI----QKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGT 156
Query: 59 PGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118
PGR++D++ R L + + + VLDEAD +L GF+ QI I +L + L SAT
Sbjct: 157 PGRVFDMLNRR-YLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMP 215
Query: 119 EAVEELSKAGLRNPVRIEVRAE 140
V E++K +R+P+RI V+ E
Sbjct: 216 TDVLEVTKKFMRDPIRILVKKE 237
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 9/142 (6%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD---VKSMLLVGGVEVKADVKKIEEEGANLLIGT 58
+I++PTREL+ Q+ Q + L D V+S +GG V D++K++ G +++ GT
Sbjct: 72 ALILAPTRELAVQV----QKGLLALGDYMNVQSHACIGGTNVGEDIRKLDY-GQHVVAGT 126
Query: 59 PGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118
PGR++D++ R L R + +LVLDEAD +L+ GF++QI + LP + L SAT
Sbjct: 127 PGRVFDMIRRRS-LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 185
Query: 119 EAVEELSKAGLRNPVRIEVRAE 140
V E++ + +P+RI V+ +
Sbjct: 186 HEVLEMTNKFMTDPIRILVKRD 207
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 5/136 (3%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++++PTREL+ Q VA + P +K + + GG K+ GA+ ++ TPGR
Sbjct: 75 ALVLTPTRELALQ---VASELTAVAPHLKVVAVYGGTGY-GKQKEALLRGADAVVATPGR 130
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
D + R VLD + + VLDEAD +L MGF++++ ++S P R+T LFSAT
Sbjct: 131 ALDYL-RQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWA 189
Query: 122 EELSKAGLRNPVRIEV 137
+ L++ ++NPV I V
Sbjct: 190 KRLAERYMKNPVLINV 205
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 5/136 (3%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++++PTREL+ Q VA + P +K + + GG K+ GA+ ++ TPGR
Sbjct: 75 ALVLTPTRELALQ---VASELTAVAPHLKVVAVYGGTGY-GKQKEALLRGADAVVATPGR 130
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
D + R VLD + + VLDEAD +L MGF++++ ++S P R+T LFSAT
Sbjct: 131 ALDYL-RQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWA 189
Query: 122 EELSKAGLRNPVRIEV 137
+ L++ ++NPV I V
Sbjct: 190 KRLAERYMKNPVLINV 205
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 83/140 (59%), Gaps = 9/140 (6%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD---VKSMLLVGGVEVKADVKKIEEEGANLLIGT 58
+I++PTREL+ QI Q + L D V+ +GG V D++K++ G +++ GT
Sbjct: 109 ALILAPTRELAVQI----QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGT 163
Query: 59 PGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118
PGR++D++ R L R + +LVLDEAD +L+ GF++QI + LP + L SAT
Sbjct: 164 PGRVFDMIRRRS-LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 222
Query: 119 EAVEELSKAGLRNPVRIEVR 138
+ E++ + +P+RI V+
Sbjct: 223 HEILEMTNKFMTDPIRILVK 242
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 84/142 (59%), Gaps = 9/142 (6%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD---VKSMLLVGGVEVKADVKKIEEEGANLLIGT 58
+I++PTREL+ QI Q + L D V+ +GG V D++K++ G +++ GT
Sbjct: 87 ALILAPTRELAVQI----QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGT 141
Query: 59 PGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118
PGR++D++ R L R + +LVLDEAD +L+ GF++QI + LP + L SAT
Sbjct: 142 PGRVFDMIRRRS-LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 200
Query: 119 EAVEELSKAGLRNPVRIEVRAE 140
+ E++ + +P+RI V+ +
Sbjct: 201 HEILEMTNKFMTDPIRILVKRD 222
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 84/142 (59%), Gaps = 9/142 (6%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD---VKSMLLVGGVEVKADVKKIEEEGANLLIGT 58
+I++PTREL+ QI Q + L D V+ +GG V D++K++ G +++ GT
Sbjct: 109 ALILAPTRELAVQI----QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGT 163
Query: 59 PGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118
PGR++D++ R L R + +LVLDEAD +L+ GF++QI + LP + L SAT
Sbjct: 164 PGRVFDMIRRRS-LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 222
Query: 119 EAVEELSKAGLRNPVRIEVRAE 140
+ E++ + +P+RI V+ +
Sbjct: 223 HEILEMTNKFMTDPIRILVKRD 244
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 84/142 (59%), Gaps = 9/142 (6%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD---VKSMLLVGGVEVKADVKKIEEEGANLLIGT 58
+I++PTREL+ QI Q + L D V+ +GG V D++K++ G +++ GT
Sbjct: 108 ALILAPTRELAVQI----QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGT 162
Query: 59 PGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118
PGR++D++ R L R + +LVLDEAD +L+ GF++QI + LP + L SAT
Sbjct: 163 PGRVFDMIRRRS-LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 221
Query: 119 EAVEELSKAGLRNPVRIEVRAE 140
+ E++ + +P+RI V+ +
Sbjct: 222 HEILEMTNKFMTDPIRILVKRD 243
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 84/142 (59%), Gaps = 9/142 (6%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD---VKSMLLVGGVEVKADVKKIEEEGANLLIGT 58
+I++PTREL+ Q+ Q + L D V+ +GG V D++K++ G +++ GT
Sbjct: 72 ALILAPTRELAVQV----QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGT 126
Query: 59 PGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118
PGR++D++ R L R + +LVLDEAD +L+ GF++QI + LP + L SAT
Sbjct: 127 PGRVFDMIRRRS-LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 185
Query: 119 EAVEELSKAGLRNPVRIEVRAE 140
+ E++ + +P+RI V+ +
Sbjct: 186 HEILEMTNKFMTDPIRILVKRD 207
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 8/141 (5%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++++PTREL+ QI V + D+K +GG D + + + A +++GTPGR
Sbjct: 85 ALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD--AQIVVGTPGR 141
Query: 62 LYDIMERMDVLDFRN--LVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119
++D ++R FR + + +LDEAD +L GF++QI I + LP + L SAT
Sbjct: 142 VFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN 198
Query: 120 AVEELSKAGLRNPVRIEVRAE 140
V E++ +RNPVRI V+ +
Sbjct: 199 DVLEVTTKFMRNPVRILVKKD 219
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 8/139 (5%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD---VKSMLLVGGVEVKADVKKIEEEGANLLIGT 58
++++PTREL+ QI Q + L D +GG V+A+V+ ++ E ++++GT
Sbjct: 86 ALVLAPTRELAQQI----QXVVMALGDYMGASCHACIGGTNVRAEVQXLQMEAPHIIVGT 141
Query: 59 PGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118
PGR++D++ R L + + VLDEAD +L GF QI I L + L SAT
Sbjct: 142 PGRVFDMLNRR-YLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQXLNSNTQVVLLSATMP 200
Query: 119 EAVEELSKAGLRNPVRIEV 137
V E++ +R+P+RI V
Sbjct: 201 SDVLEVTXXFMRDPIRILV 219
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 8/141 (5%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++++PTREL+ QI V + D+K +GG D + + + A +++GTPGR
Sbjct: 93 ALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD--AQIVVGTPGR 149
Query: 62 LYDIMERMDVLDFRN--LVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119
++D ++R FR + + +LDEAD +L GF++QI I + LP + L SAT
Sbjct: 150 VFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN 206
Query: 120 AVEELSKAGLRNPVRIEVRAE 140
V E++ +RNPVRI V+ +
Sbjct: 207 DVLEVTTKFMRNPVRILVKKD 227
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 77/136 (56%), Gaps = 8/136 (5%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++++PTREL+ QI V + D+K +GG D + + + A +++GTPGR
Sbjct: 92 ALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD--AQIVVGTPGR 148
Query: 62 LYDIMERMDVLDFRN--LVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119
++D ++R FR + + +LDEAD +L GF++QI I + LP + L SAT
Sbjct: 149 VFDNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN 205
Query: 120 AVEELSKAGLRNPVRI 135
V E++ +RNPVRI
Sbjct: 206 DVLEVTTKFMRNPVRI 221
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 5/140 (3%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPD---VKSMLLVGGVEVKADVKKIEEEGANLLIG 57
+I +PTREL+ QIYH P + + L+GG + + ++K+ + +++IG
Sbjct: 74 QAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQ-PHIVIG 132
Query: 58 TPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117
TPGR+ D + R LD ILV+DEAD LD GF + I +R PK + +FSAT
Sbjct: 133 TPGRINDFI-REQALDVHTAHILVVDEADLXLDXGFITDVDQIAARXPKDLQXLVFSATI 191
Query: 118 TEAVEELSKAGLRNPVRIEV 137
E ++ K NP + V
Sbjct: 192 PEKLKPFLKKYXENPTFVHV 211
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 8/142 (5%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+ ++PTREL+ QI V ++ D+K +GG D + + + A +++GTPG
Sbjct: 91 QALXLAPTRELALQIQKVVXA-LAFHXDIKVHACIGGTSFVEDAEGLRD--AQIVVGTPG 147
Query: 61 RLYDIMERMDVLDFRNLVI--LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118
R++D ++R FR I +LDEAD L GF++QI I + LP + L SAT
Sbjct: 148 RVFDNIQRRR---FRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPTTQVVLLSATXP 204
Query: 119 EAVEELSKAGLRNPVRIEVRAE 140
V E++ RNPVRI V+ +
Sbjct: 205 NDVLEVTTKFXRNPVRILVKKD 226
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 78/135 (57%), Gaps = 6/135 (4%)
Query: 3 MIISPTRELSAQI-YHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++++PTREL+ Q+ H+ I D K + GG+ KA + ++ A++++ TPGR
Sbjct: 60 LVVTPTRELTRQVASHIRD--IGRYMDTKVAEVYGGMPYKAQINRVR--NADIVVATPGR 115
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
L D+ + V+D + I+++DEAD + +MGF I I+++ + TGLFSAT E +
Sbjct: 116 LLDLWSK-GVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEI 174
Query: 122 EELSKAGLRNPVRIE 136
++ K + N IE
Sbjct: 175 RKVVKDFITNYEEIE 189
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 3/139 (2%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+ PTREL+ Q V + + + M+ GG ++ D+ ++ E ++L+GTPGR
Sbjct: 92 ALIMVPTRELALQTSQVVRT-LGKHCGISCMVTTGGTNLRDDILRLNET-VHILVGTPGR 149
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ D+ R V D + + ++DEAD++L F+ I I+S LP ++ LFSAT V
Sbjct: 150 VLDLASR-KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTV 208
Query: 122 EELSKAGLRNPVRIEVRAE 140
+E L P I + E
Sbjct: 209 KEFMVKHLHKPYEINLMEE 227
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 84/138 (60%), Gaps = 7/138 (5%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+I+SPTREL+ QI++ A+ F + +K ++ GG + + I G +++I TPGRL
Sbjct: 133 VIVSPTRELAIQIFNEARKF-AFESYLKIGIVYGGTSFRHQNECITR-GCHVVIATPGRL 190
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRL---PKLRRTGLFSATQTE 119
D ++R + F + +VLDEADR+LDMGF + + I++ + P+ +T +FSAT E
Sbjct: 191 LDFVDRT-FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPE-HQTLMFSATFPE 248
Query: 120 AVEELSKAGLRNPVRIEV 137
++ ++ L+N V + +
Sbjct: 249 EIQRMAGEFLKNYVFVAI 266
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
++++PTREL+ + + + +KS+ + GG ++ I + G +++I TPGRL
Sbjct: 98 LVLTPTRELALHVEAECSKY--SYKGLKSICIYGGRNRNGQIEDISK-GVDIIIATPGRL 154
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
D ++ + ++ R++ LV+DEAD++LDM F+ QI I+ + R+T + SAT + V
Sbjct: 155 ND-LQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVR 213
Query: 123 ELSKAGLRNPVRIEV 137
+L+ + L++P+ + V
Sbjct: 214 QLALSYLKDPMIVYV 228
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
M+I PTREL+ Q+ + + K M GG ++ D+ ++++ +++I TPGR
Sbjct: 74 AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT-VHVVIATPGR 132
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ D++++ V ++ ++VLDEAD+LL F + + II LPK R+ L+SAT +V
Sbjct: 133 ILDLIKK-GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSV 191
Query: 122 EELSKAGLRNPVRI 135
++ + L P I
Sbjct: 192 QKFMNSHLEKPYEI 205
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+I++PTRE++ QI+ V + ++ + +GG + D ++++ ++ +G+PGR+
Sbjct: 96 LILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK--CHIAVGSPGRI 153
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQTEAV 121
++E +D L+ ++ + +LDEAD+LL+ G FQ+QI++I S LP ++ SAT E +
Sbjct: 154 KQLIE-LDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFL 212
Query: 122 EELSKAGLRNPVRIEVRA 139
+R+P + + +
Sbjct: 213 ANALTKYMRDPTFVRLNS 230
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++ TREL+ QI + F +P+VK + GG+ +K D + +++ ++++GTPGR+
Sbjct: 79 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 138
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ R L+ +++ +LDEAD++L+ + ++ + I P ++ +FSAT ++ +
Sbjct: 139 L-ALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEI 197
Query: 122 EELSKAGLRNPVRIEVRAE 140
+ + +++P+ I V E
Sbjct: 198 RPVCRKFMQDPMEIFVDDE 216
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++ TREL+ QI + F +P+VK + GG+ +K D + +++ ++++GTPGR+
Sbjct: 80 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 139
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ R L+ +++ +LDE D++L+ + ++ + I P ++ +FSAT ++ +
Sbjct: 140 L-ALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEI 198
Query: 122 EELSKAGLRNPVRIEVRAE 140
+ + +++P+ I V E
Sbjct: 199 RPVCRKFMQDPMEIFVDDE 217
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++ TREL+ QI + F +P+VK + GG+ +K D + +++ ++++GTPGR+
Sbjct: 80 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 139
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ R L+ +++ +LDE D++L+ + ++ + I P ++ +FSAT ++ +
Sbjct: 140 L-ALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEI 198
Query: 122 EELSKAGLRNPVRIEVRAE 140
+ + +++P+ I V E
Sbjct: 199 RPVCRKFMQDPMEIFVDDE 217
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 68.6 bits (166), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 10/134 (7%)
Query: 2 GMIISPTRELSAQIYHVAQPFIST---LPDVKSMLLVGGVEVKADVKKIEEEGANLLIGT 58
+I++PTR+L+ QI + L + LVGG + +A + K+ + N++I T
Sbjct: 98 AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIAT 157
Query: 59 PGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLR-------RTG 111
PGRL D++E+ FR + VLDEADRLL++GF+ + I L + +T
Sbjct: 158 PGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTL 217
Query: 112 LFSATQTEAVEELS 125
LFSAT + V++L+
Sbjct: 218 LFSATLDDKVQKLA 231
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+++ TREL+ QI + F +P+VK + GG+ +K D + +++ ++++GTPGR+
Sbjct: 86 LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 145
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ R L+ +++ +LDE D++L+ + ++ + I P ++ +FSAT ++ +
Sbjct: 146 L-ALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEI 204
Query: 122 EELSKAGLRNPVRIEV 137
+ + +++P+ I V
Sbjct: 205 RPVCRKFMQDPMEIFV 220
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 70/125 (56%), Gaps = 4/125 (3%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I++PTREL+ Q+ + ++K + GG + +K ++ AN+++GTPGR
Sbjct: 77 AIILTPTRELAIQVADEIESLKGN-KNLKIAKIYGGKAIYPQIKALK--NANIVVGTPGR 133
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ D + R L+ +N+ +LDEAD L+ GF K + I++ K +R LFSAT +
Sbjct: 134 ILDHINR-GTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKRILLFSATXPREI 192
Query: 122 EELSK 126
L+K
Sbjct: 193 LNLAK 197
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 10/134 (7%)
Query: 2 GMIISPTRELSAQIYHVAQPFIST---LPDVKSMLLVGGVEVKADVKKIEEEGANLLIGT 58
+I++PTR+L+ QI + L + LVGG + +A + K+ + N++I T
Sbjct: 98 AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIAT 157
Query: 59 PGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYII-------SRLPKLRRTG 111
PGRL D++E+ FR + VLDEADRLL++GF+ + I S+ +T
Sbjct: 158 PGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTL 217
Query: 112 LFSATQTEAVEELS 125
LFSAT + V++L+
Sbjct: 218 LFSATLDDKVQKLA 231
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 10/134 (7%)
Query: 2 GMIISPTRELSAQIYHVAQPFIST---LPDVKSMLLVGGVEVKADVKKIEEEGANLLIGT 58
+I++PTR+L+ QI + L + LVGG + +A + K+ + N++I T
Sbjct: 149 AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIAT 208
Query: 59 PGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYII-------SRLPKLRRTG 111
PGRL D++E+ FR + VLDEADRLL++GF+ + I S+ +T
Sbjct: 209 PGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTL 268
Query: 112 LFSATQTEAVEELS 125
LFSAT + V++L+
Sbjct: 269 LFSATLDDKVQKLA 282
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+ ++P+REL+ QI V + +VK+ +K V K + A ++IGTPG
Sbjct: 192 AICLAPSRELARQIMDVVTE-MGKYTEVKTAF-----GIKDSVPKGAKIDAQIVIGTPGT 245
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEA 120
+ D+M+R LD R++ + VLDEAD +LD G Q I LP+ + LFSAT +E
Sbjct: 246 VMDLMKRRQ-LDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSER 304
Query: 121 VEELSKAGLRNPVRIEVRAE 140
VE+ ++ N I ++ E
Sbjct: 305 VEKYAERFAPNANEIRLKTE 324
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 8/138 (5%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+ ++P+REL+ Q V Q + + S L+V +K ++ A +++GTPG
Sbjct: 95 AICLAPSRELARQTLEVVQE-MGKFTKITSQLIVPD-----SFEKNKQINAQVIVGTPGT 148
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEA 120
+ D+M R ++ + + I VLDEAD +LD G Q + LPK + LFSAT +A
Sbjct: 149 VLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADA 207
Query: 121 VEELSKAGLRNPVRIEVR 138
V + +K + N +E++
Sbjct: 208 VRQYAKKIVPNANTLELQ 225
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 8/138 (5%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+ ++P+REL+ Q V Q + + S L+V +K ++ A +++GTPG
Sbjct: 78 AICLAPSRELARQTLEVVQE-MGKFTKITSQLIV-----PDSFEKNKQINAQVIVGTPGT 131
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEA 120
+ D+M R ++ + + I VLDEAD +LD G Q + LPK + LFSAT +A
Sbjct: 132 VLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADA 190
Query: 121 VEELSKAGLRNPVRIEVR 138
V + +K + N +E++
Sbjct: 191 VRQYAKKIVPNANTLELQ 208
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 8/138 (5%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+ ++P+REL+ Q V Q + + S L+V +K ++ A +++GTPG
Sbjct: 78 AICLAPSRELARQTLEVVQE-MGKFTKITSQLIV-----PDSFEKNKQINAQVIVGTPGT 131
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEA 120
+ D+M R ++ + + I VLDEAD +LD G Q + LPK + LFSAT +A
Sbjct: 132 VLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADA 190
Query: 121 VEELSKAGLRNPVRIEVR 138
V + +K + N +E++
Sbjct: 191 VRQYAKKIVPNANTLELQ 208
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+ +SPT EL+ Q V + P++K V G +++ +KI E+ ++IGTPG +
Sbjct: 99 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-QKISEQ---IVIGTPGTV 154
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLL-DMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
D ++ +D + + + VLDEAD ++ G Q Q I LP+ + LFSAT ++V
Sbjct: 155 LDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSV 214
Query: 122 EELSKAGLRNPVRIEVRAE 140
+ ++ + +P I+++ E
Sbjct: 215 WKFAQKVVPDPNVIKLKRE 233
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+ +SPT EL+ Q V + P++K V G +++ +KI E+ ++IGTPG +
Sbjct: 99 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-QKISEQ---IVIGTPGTV 154
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLL-DMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
D ++ +D + + + VLDEAD ++ G Q Q I LP+ + LFSAT ++V
Sbjct: 155 LDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSV 214
Query: 122 EELSKAGLRNPVRIEVRAE 140
+ ++ + +P I+++ E
Sbjct: 215 WKFAQKVVPDPNVIKLKRE 233
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+ +SPT EL+ Q V + P++K V G +++ +KI E+ ++IGTPG +
Sbjct: 136 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-QKISEQ---IVIGTPGTV 191
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLL-DMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
D ++ +D + + + VLDEAD ++ G Q Q I LP+ + LFSAT ++V
Sbjct: 192 LDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSV 251
Query: 122 EELSKAGLRNPVRIEVRAE 140
+ ++ + +P I+++ E
Sbjct: 252 WKFAQKVVPDPNVIKLKRE 270
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+ +SPT EL+ Q V + P++K V G +++ +KI E+ ++IGTPG +
Sbjct: 115 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-QKISEQ---IVIGTPGTV 170
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLL-DMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
D ++ +D + + + VLDEAD ++ G Q Q I LP+ + LFSAT ++V
Sbjct: 171 LDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSV 230
Query: 122 EELSKAGLRNPVRIEVRAE 140
+ ++ + +P I+++ E
Sbjct: 231 WKFAQKVVPDPNVIKLKRE 249
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+ +SPT EL+ Q V + P++K V G +++ +KI E+ ++IGTPG +
Sbjct: 166 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-QKISEQ---IVIGTPGTV 221
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLL-DMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
D ++ +D + + + VLDEAD ++ G Q Q I LP+ + LFSAT ++V
Sbjct: 222 LDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSV 281
Query: 122 EELSKAGLRNPVRIEVRAE 140
+ ++ + +P I+++ E
Sbjct: 282 WKFAQKVVPDPNVIKLKRE 300
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 76/139 (54%), Gaps = 5/139 (3%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+ +SPT EL+ Q V + P++K V G +++ +KI E+ ++IGTPG +
Sbjct: 166 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-QKISEQ---IVIGTPGTV 221
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLL-DMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
D ++ +D + + + VLDEAD ++ G Q Q I LP+ + LFSAT ++V
Sbjct: 222 LDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSV 281
Query: 122 EELSKAGLRNPVRIEVRAE 140
+ ++ + +P I+++ E
Sbjct: 282 WKFAQKVVPDPNVIKLKRE 300
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 8/144 (5%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+IISPTREL++QI H IS + ++ + ++L+ TP R
Sbjct: 101 ALIISPTRELASQI-HRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNR 159
Query: 62 L-YDIMERMDVLDFRNLVILVLDEADRLLD---MGFQKQIS--YIISRLPKLRRTGLFSA 115
L Y + + +D ++ LV+DE+D+L + GF+ Q++ ++ K+RR +FSA
Sbjct: 160 LIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRR-AMFSA 218
Query: 116 TQTEAVEELSKAGLRNPVRIEVRA 139
T VE+ K L N + + + A
Sbjct: 219 TFAYDVEQWCKLNLDNVISVSIGA 242
>pdb|3RPL|A Chain A, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803 In
Complex With Fructose-1,6- Bisphosphate
pdb|3RPL|C Chain C, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803 In
Complex With Fructose-1,6- Bisphosphate
pdb|3RPL|D Chain D, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803 In
Complex With Fructose-1,6- Bisphosphate
Length = 379
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 87 RLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRI 135
R L FQ Q+ Y P++ +TGL ++ +E L+ G++NP ++
Sbjct: 268 RCLGGHFQGQLIYD----PEVVKTGLIGESREGNLERLASMGIKNPDQV 312
>pdb|3ROJ|A Chain A, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803
pdb|3ROJ|B Chain B, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803
pdb|3ROJ|C Chain C, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803
pdb|3ROJ|D Chain D, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803
Length = 379
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 87 RLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRI 135
R L FQ Q+ Y P++ +TGL ++ +E L+ G++NP ++
Sbjct: 268 RCLGGHFQGQLIYD----PEVVKTGLIGESREGNLERLASMGIKNPDQV 312
>pdb|3RPL|B Chain B, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803 In
Complex With Fructose-1,6- Bisphosphate
Length = 379
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 87 RLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRI 135
R L FQ Q+ Y P++ +TGL ++ +E L+ G++NP ++
Sbjct: 268 RCLGGHFQGQLIYD----PEVVKTGLIGESREGNLERLASMGIKNPDQV 312
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 49 EEGANLLIGTPGRLYDIMERMDVLDFRNLV----ILVLDEADRLLDMGFQKQISYIISRL 104
+ G + +IG G L +R + R L+ IL+LDEA LD ++ I + L
Sbjct: 467 DNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL 526
Query: 105 PKLRRTGLFSATQTEAVEE 123
K RT L A + +E+
Sbjct: 527 QK-NRTSLVIAHRLSTIEQ 544
>pdb|3PIV|A Chain A, Zebrafish Interferon 1
pdb|3PIV|B Chain B, Zebrafish Interferon 1
Length = 164
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 52 ANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLD 90
A+L P RLY +M++ V D ++L LD L+D
Sbjct: 29 ADLETPFPSRLYTLMDKSKVEDQVKFLVLTLDHIIHLMD 67
>pdb|3IL0|A Chain A, The Crystal Structure Of The Aminopeptidase P,xaa-pro
Aminopeptidase From Streptococcus Thermophilus
pdb|3IL0|B Chain B, The Crystal Structure Of The Aminopeptidase P,xaa-pro
Aminopeptidase From Streptococcus Thermophilus
Length = 131
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
+DI+E D L +++V V E D+L +GF Q+S+ + + G + QT +E
Sbjct: 70 FDIIESKDPL--KDIVKFV--EVDKLETIGFDNQVSFAYYQALQAIFEGYTLSPQTNFME 125
Query: 123 EL 124
EL
Sbjct: 126 EL 127
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 49 EEGANLLIGTPGRLYDIMERMDVLDFRNLV----ILVLDEADRLLDMGFQKQISYIISRL 104
+ G + +IG G L +R + R L+ IL+LDEA LD ++ I + L
Sbjct: 467 DNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL 526
Query: 105 PKLRRTGLFSATQTEAVEE 123
K RT L A + +E+
Sbjct: 527 QK-NRTSLVIAHRLSTIEK 544
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,249,412
Number of Sequences: 62578
Number of extensions: 145006
Number of successful extensions: 640
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 61
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)