BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029993
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FLB0|RH18_ARATH DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana
GN=RH18 PE=2 SV=1
Length = 593
Score = 264 bits (675), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 130/167 (77%), Positives = 149/167 (89%), Gaps = 4/167 (2%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELS QIY+VAQPF+STL +V S+LLVGG EVKAD+K IEEEG N+LIGTPG
Sbjct: 92 MGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPG 151
Query: 61 RLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL DIMERM++LDFRNL IL+LDEADRLL+MGFQ+Q++YIISRLPK RRTGLFSATQTE
Sbjct: 152 RLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEG 211
Query: 121 VEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEVL 167
VEEL+KAGLRNPVR+EVRA+SKS SSQQL +SKTP GLHLE +
Sbjct: 212 VEELAKAGLRNPVRVEVRAKSKSE----SSQQLTNSKTPSGLHLEYM 254
>sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp.
japonica GN=Os01g0164500 PE=1 SV=2
Length = 647
Score = 249 bits (636), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 116/167 (69%), Positives = 146/167 (87%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60
+G+IISPTRELS+QIY+VAQPF +TL V SMLLVGG ++KA++KK+EEEGAN+L+GTPG
Sbjct: 98 LGIIISPTRELSSQIYNVAQPFFATLKGVSSMLLVGGFDIKAELKKLEEEGANILVGTPG 157
Query: 61 RLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
+L+D+MER+D L+++NL IL+LDEADRLLD+GFQKQI+ IIS+LPKLRRTGLFSATQTEA
Sbjct: 158 KLFDVMERLDTLNYKNLEILILDEADRLLDLGFQKQITSIISKLPKLRRTGLFSATQTEA 217
Query: 121 VEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEVL 167
V+EL+KAGLRNPVR+EV+ E K + Q+L SKTPLGL LE +
Sbjct: 218 VKELAKAGLRNPVRVEVKTEVKPTGKDGAQQELGPSKTPLGLRLEYM 264
>sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis thaliana
GN=RH49 PE=2 SV=2
Length = 558
Score = 225 bits (573), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/169 (67%), Positives = 136/169 (80%), Gaps = 13/169 (7%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELSAQI+ VA+PF+STLP+V S+LLVGG EV+AD+ +EEEGANLLIGTPG
Sbjct: 92 MGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPG 151
Query: 61 RLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL D+M+RM+ LDFRNL IL+LDEADRLLDMGFQKQ++YIISRLPK RRTGLFSATQT+A
Sbjct: 152 RLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQA 211
Query: 121 VEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEVLRL 169
V +L+KAGLRN + + AESK SKT GL+ E L+
Sbjct: 212 VADLAKAGLRNAMEVISGAESK-------------SKTSSGLYCEYLKC 247
>sp|Q9FVV4|RH55_ARATH DEAD-box ATP-dependent RNA helicase 55 OS=Arabidopsis thaliana
GN=RH55 PE=2 SV=1
Length = 465
Score = 183 bits (464), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 94/145 (64%), Positives = 113/145 (77%), Gaps = 9/145 (6%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60
MG+IISPTRELSAQI+ VA+ + EV+AD+ +EEEGANLLIGTPG
Sbjct: 93 MGVIISPTRELSAQIHKVARAVRLDFAKCR--------EVEADMNTLEEEGANLLIGTPG 144
Query: 61 RLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120
RL D+M+RM+ LDFRNL IL+LDEADRLLDMGFQKQ++YIISRLPK RRTGLFSATQT+A
Sbjct: 145 RLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQA 204
Query: 121 VEELSKAGLRNPVRIEVRAESKSHH 145
V +L+KAGLRNP ++ A+ KS
Sbjct: 205 VADLAKAGLRNPY-LKCEADQKSSQ 228
>sp|Q8JHJ2|DDX55_DANRE ATP-dependent RNA helicase DDX55 OS=Danio rerio GN=ddx55 PE=2 SV=2
Length = 593
Score = 146 bits (369), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 109/166 (65%), Gaps = 13/166 (7%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F+ P +LL+GG DV+K++ +GAN++I TPGR
Sbjct: 85 ALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDVEKLKTQGANIIIATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R D LD ++L +LVLDEADRLLDMGF+ ++ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGYLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGL 162
QT+ +E+L +AGLRNPVRI V K +ASS Q KTP L
Sbjct: 205 QTQELEKLVRAGLRNPVRITV----KEKGVAASSVQ----KTPAKL 242
>sp|Q6AZV7|DDX55_XENLA ATP-dependent RNA helicase DDX55 OS=Xenopus laevis GN=ddx55 PE=2
SV=1
Length = 594
Score = 146 bits (369), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 105/167 (62%), Gaps = 13/167 (7%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F P +LL+GG DV+K +E G N+++ TPGR
Sbjct: 85 ALIITPTRELAVQIDEVLSCFTKHFPQFSQILLIGGSNPVDDVRKFKEHGGNIIVATPGR 144
Query: 62 LYDIMERM-DVLDF----RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R D LD + L +L+LDEADRLLDMGF+ I+ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRQADGLDLVICVKTLDVLILDEADRLLDMGFEASINTILGFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLH 163
QT+ +E L +AGLRNPVRI V K +A+S Q KTP+ L
Sbjct: 205 QTQELENLVRAGLRNPVRIAV----KEKGVAATSTQ----KTPIRLQ 243
>sp|Q5ZLN8|DDX55_CHICK ATP-dependent RNA helicase DDX55 OS=Gallus gallus GN=DDX55 PE=2
SV=1
Length = 591
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 97/142 (68%), Gaps = 5/142 (3%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F P +LL+GG DV+K +E G N+++ TPGR
Sbjct: 85 AIIITPTRELAIQIDEVLTHFTKHFPKFSQILLIGGRNPMEDVEKFKEHGGNIIVATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R D LD ++L +LVLDEADRLLDMGF+ ++ I++ LPK RRTGLFSAT
Sbjct: 145 LEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRIEVR 138
QT+ VE L +AGLRNPVRI V+
Sbjct: 205 QTQEVENLVRAGLRNPVRISVK 226
>sp|Q8NHQ9|DDX55_HUMAN ATP-dependent RNA helicase DDX55 OS=Homo sapiens GN=DDX55 PE=1 SV=3
Length = 600
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 104/161 (64%), Gaps = 9/161 (5%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F P+ +L +GG DV++ +++G N+++ TPGR
Sbjct: 85 AIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R + LD R+L +LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSK 157
QT+ VE L +AGLRNPVR+ V K +ASS Q S+
Sbjct: 205 QTQEVENLVRAGLRNPVRVSV----KEKGVAASSAQKTPSR 241
>sp|Q2NL08|DDX55_BOVIN ATP-dependent RNA helicase DDX55 OS=Bos taurus GN=DDX55 PE=2 SV=1
Length = 601
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/161 (49%), Positives = 101/161 (62%), Gaps = 9/161 (5%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+II+PTREL+ QI V F P +L +GG DV + +E G N+++ TPGR
Sbjct: 85 AIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGEDVARFKELGGNIIVATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R + LD R+L +LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSK 157
QT+ VE L +AGLRNPVRI V K +ASS Q S+
Sbjct: 205 QTQEVENLVRAGLRNPVRISV----KEKGVAASSTQKTPSR 241
>sp|Q6ZPL9|DDX55_MOUSE ATP-dependent RNA helicase DDX55 OS=Mus musculus GN=Ddx55 PE=2 SV=2
Length = 600
Score = 139 bits (351), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 102/161 (63%), Gaps = 9/161 (5%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
++I+PTREL+ QI V F P +L +GG DV++ ++ G N+++ TPGR
Sbjct: 85 AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVATPGR 144
Query: 62 LYDIMER-MDVLDF----RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
L D+ R + LD ++L +LVLDEADRLLDMGF+ I+ I+ LPK RRTGLFSAT
Sbjct: 145 LEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSAT 204
Query: 117 QTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSK 157
QT+ VE L +AGLRNPVRI V K +ASS Q S+
Sbjct: 205 QTQEVENLVRAGLRNPVRISV----KEKGVAASSTQKTPSR 241
>sp|Q9VHU1|DDX55_DROME Probable ATP-dependent RNA helicase DDX55 homolog OS=Drosophila
melanogaster GN=CG9630 PE=2 SV=1
Length = 613
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 95/147 (64%), Gaps = 7/147 (4%)
Query: 2 GMIISPTRELSAQIYHVAQPFIS--TLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTP 59
++ISPTREL+ QI V F+ L + L+VGG ++ D+ + E +L+ TP
Sbjct: 85 ALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRETPCILVCTP 144
Query: 60 GRLYDIMERM-DVLDF----RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114
GRL D+ +R D L+ ++L LVLDEADRLLD+GF+ ++ I+ LP+ RRTGLFS
Sbjct: 145 GRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYLPRQRRTGLFS 204
Query: 115 ATQTEAVEELSKAGLRNPVRIEVRAES 141
ATQT V +L +AGLRNPV + V+ ++
Sbjct: 205 ATQTTEVTDLIRAGLRNPVLVSVKEKA 231
>sp|Q750F8|SPB4_ASHGO ATP-dependent rRNA helicase SPB4 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SPB4
PE=3 SV=2
Length = 599
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 94/147 (63%), Gaps = 7/147 (4%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPD----VKSMLLVGG--VEVKADVKKIEEEGANLLI 56
+IISPTREL++QI V + F++ PD +KS LL+G V+ DV E +L+
Sbjct: 87 IIISPTRELASQIQGVIEAFLTYYPDGEYPIKSQLLIGSNTSSVRDDVAAFLEHRPQILV 146
Query: 57 GTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
GTPGRL D + +M + + +LDEAD+LLDM F+K + I+ LPK RRTGLFSAT
Sbjct: 147 GTPGRLLDFL-KMPNIKTSSCGAAILDEADKLLDMNFEKDVETILKMLPKQRRTGLFSAT 205
Query: 117 QTEAVEELSKAGLRNPVRIEVRAESKS 143
+ A ++ K G+RNPV++ V+ +K+
Sbjct: 206 VSSAGTQVFKTGMRNPVKVSVKTSNKA 232
>sp|Q6CN92|SPB4_KLULA ATP-dependent rRNA helicase SPB4 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SPB4 PE=3 SV=1
Length = 596
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 92/143 (64%), Gaps = 7/143 (4%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD----VKSMLLVG--GVEVKADVKKIEEEGANLL 55
+IISPTREL++QI+ V + F+ PD ++S LLVG V+ D+ + +L
Sbjct: 86 SLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQIL 145
Query: 56 IGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
+GTPGR+ D +++ +V + +VLDEAD+LLD+ FQK + I+ LPK RRTGLFSA
Sbjct: 146 VGTPGRVLDFLQKTNV-KTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSA 204
Query: 116 TQTEAVEELSKAGLRNPVRIEVR 138
T A ++ K G+RNPV++ V+
Sbjct: 205 TIESAGAQIFKTGMRNPVKVAVK 227
>sp|Q2UBZ5|SPB4_ASPOR ATP-dependent rRNA helicase spb4 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=spb4 PE=3 SV=1
Length = 638
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 99/168 (58%), Gaps = 26/168 (15%)
Query: 2 GMIISPTRELSAQIYHV------------------------AQPFISTLPDVKSMLLVGG 37
+IISPTREL++QIYHV Q F S+ V LL+GG
Sbjct: 90 AIIISPTRELASQIYHVLLSLLAFHPPSASVINPSEDDDVPRQKFPSSTLKVVPQLLLGG 149
Query: 38 VEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRLLDMGFQK 95
A D+ K ++ NLL+ TPGRL +++ V + +LVLDEADRLLD+GF++
Sbjct: 150 STTPAEDLSKFLKQSPNLLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKE 209
Query: 96 QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKS 143
+ II RLPK RRTGLFSA+ +EAV+++ + GLRNPV++ V+ + S
Sbjct: 210 TLQNIIRRLPKQRRTGLFSASISEAVDQIVRVGLRNPVKVMVKVKGTS 257
>sp|Q0UP45|SPB4_PHANO ATP-dependent rRNA helicase SPB4 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=SPB4 PE=3 SV=1
Length = 633
Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 106/199 (53%), Gaps = 36/199 (18%)
Query: 2 GMIISPTRELSAQIYHVAQPFIS--------------------------------TLPDV 29
+IISPTREL+ QI+ V + TL V
Sbjct: 87 AIIISPTRELATQIHTVLSSLLKFHAPSAAMLEPDDEDTDMEDADTPPKPTFPPGTLKAV 146
Query: 30 KSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRL 88
+LL G V D+ ++ N+LIGTPGRL +++ V + LV+DEADRL
Sbjct: 147 PQLLLGGSVTPAQDLSAFLKKSPNILIGTPGRLLELLRSPHVHCPQSSFDALVMDEADRL 206
Query: 89 LDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASA 148
LD+GF++ + IISRLPK RRTGLFSA+ +EAV++L + GLRNPVRI V+ +++ A+
Sbjct: 207 LDLGFKEDLQKIISRLPKQRRTGLFSASMSEAVDQLIRVGLRNPVRIAVKVKAR---ATG 263
Query: 149 SSQQLASSKTPLGLHLEVL 167
++ +TP L + L
Sbjct: 264 EDGKIEDKRTPASLQMSYL 282
>sp|O74764|SPB4_SCHPO ATP-dependent rRNA helicase spb4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spb4 PE=3 SV=1
Length = 606
Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 110/190 (57%), Gaps = 23/190 (12%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD--------VKSMLLVGGVEVKADVKKIEEEGAN 53
+I++PTREL+ QI++V + ++ PD V M + G + D+ E+ +
Sbjct: 75 ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPS 134
Query: 54 LLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113
++IGTPGRL +++ + ++L IL+LDEAD L+DMGFQ+ + IIS+LPK RRTGLF
Sbjct: 135 VVIGTPGRLNEMLSHISS---KHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLF 191
Query: 114 SATQTEAVEELSK-AGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEVLRL-NI 171
SAT + V K AGLRN VR+ V SK ++TP L ++ L + I
Sbjct: 192 SATMNDTVSSFLKIAGLRNSVRVSVTVTSKK----------IDTRTPSSLAIQSLVIPPI 241
Query: 172 FWLQFTLHVV 181
+ +Q +H++
Sbjct: 242 YKVQCMIHLL 251
>sp|Q54EC2|DDX55_DICDI Probable ATP-dependent RNA helicase ddx55 OS=Dictyostelium
discoideum GN=ddx55 PE=3 SV=1
Length = 663
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 97/195 (49%), Gaps = 47/195 (24%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDV-------------------------------- 29
+IISPTREL+ QI V F++ L +
Sbjct: 86 SIIISPTRELAIQIQQVLLEFLNDLNRIDDQNDLENIKTLEDELLEEQEEEENEKEEEEI 145
Query: 30 -----------KSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM----DVLDF 74
S+LL+GG ++ D+ + G N+LIGTPGR + + R+ F
Sbjct: 146 EKKKKKKKIEISSLLLIGGTDIYQDLVNYKNYGGNILIGTPGRTDEFLTRVVRNDQQFKF 205
Query: 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVR 134
+ +L+LDEADRLLDMGF I+ I+ +LPK RRTGLFSATQT V+EL++ G+RNP +
Sbjct: 206 KEFEMLILDEADRLLDMGFHLPINSILLKLPKQRRTGLFSATQTSEVKELARTGMRNPFK 265
Query: 135 IEVRAESKSHHASAS 149
+ V + H S
Sbjct: 266 VSVSVKHIETHEDQS 280
>sp|A3LX02|SPB4_PICST ATP-dependent rRNA helicase SPB4 OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=SPB4 PE=3 SV=2
Length = 617
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 101/155 (65%), Gaps = 6/155 (3%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPD----VKSMLLVGGVE-VKADVKKIEEEGANLL 55
+ +++SPTREL++QI V I LP+ +K+ LLVG + V+ D+ + ++ ++L
Sbjct: 95 LAIVLSPTRELASQIQSVFNNVIEYLPEDKIPIKTQLLVGSLSTVRDDLDRFLKDKPHIL 154
Query: 56 IGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
I TPGR+ D M V ++ I +LDEAD+LLD F+K + I+ RLPK RRTGLFSA
Sbjct: 155 IATPGRMLDFMSSQYV-KMNSVEIAILDEADKLLDFSFEKDVVNILKRLPKQRRTGLFSA 213
Query: 116 TQTEAVEELSKAGLRNPVRIEVRAESKSHHASASS 150
T + A + +AG+ NPV++ V+++S + +++ S+
Sbjct: 214 TISAAGNTIFRAGMNNPVKVAVKSKSTTANSAPSA 248
>sp|Q4P9E5|SPB4_USTMA ATP-dependent rRNA helicase SPB4 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=SPB4 PE=3 SV=2
Length = 767
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 111/217 (51%), Gaps = 59/217 (27%)
Query: 2 GMIISPTRELSAQIYHVAQPFIS-------------------------------TLPDVK 30
+I+SPTREL+ QIY V F+ T PD
Sbjct: 104 ALIVSPTRELAEQIYKVLVMFLDAQNHAHVQAQQQQDQDEQDEQDEQEAQSDSDTDPDAS 163
Query: 31 S----------------------MLLVGGVEVKA--DVKKIEEEGANLLIGTPGRLYDIM 66
+ L+VGG + D +++ + GA++L+GTPGRL +++
Sbjct: 164 TALNNKRKSSNHLVARKNMISGAQLVVGGSKCTPLDDYRQLRDSGADILVGTPGRLEELL 223
Query: 67 ERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126
+ V +L +LVLDEADRLLD+GF + + I+S LPK RRTGLFSAT T+A+ EL +
Sbjct: 224 SKKGVKK-SSLEVLVLDEADRLLDLGFTENLRRILSLLPKQRRTGLFSATMTDALSELVR 282
Query: 127 AGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLH 163
GLRNPVR+ V+ E+K H S+S S +TP L
Sbjct: 283 IGLRNPVRVVVKVEAK-HKTSSSIDD--SRRTPATLQ 316
>sp|Q4HVW2|SPB4_GIBZE ATP-dependent rRNA helicase SPB4 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SPB4 PE=3
SV=1
Length = 637
Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 104/191 (54%), Gaps = 32/191 (16%)
Query: 2 GMIISPTRELSAQIYHV-----------------------AQPFISTLPDVKSMLLVGGV 38
+I+SPTREL+AQI+ V +PF +T+P + LLVGG
Sbjct: 90 AIIVSPTRELAAQIHTVLMKLLQFHEASAEILPHLKDDDEKRPF-TTVPAIVPQLLVGGT 148
Query: 39 EVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRLLDMGFQKQ 96
D++ N+LI +PGRL ++M V + +LVLDEADRLLD+GF+
Sbjct: 149 TTTVQDLRFFLRHSPNVLISSPGRLVELMSSPHVHCPQSSFEVLVLDEADRLLDLGFKPD 208
Query: 97 ISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASS 156
+ I+S LPK RRTGLFSA+ +EAV E+ + GLRNPV+IEV+ + K L
Sbjct: 209 LQKILSHLPKQRRTGLFSASVSEAVGEIIRVGLRNPVKIEVKVKIK------GGGILEDR 262
Query: 157 KTPLGLHLEVL 167
KTP L + +
Sbjct: 263 KTPASLQMTYM 273
>sp|A7TJS7|SPB4_VANPO ATP-dependent rRNA helicase SPB4 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=SPB4 PE=3 SV=1
Length = 607
Score = 113 bits (282), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 95/148 (64%), Gaps = 7/148 (4%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD----VKSMLLVGG--VEVKADVKKIEEEGANLL 55
+I+SPT+EL+ QI+ V + F+ P+ ++S LLVG V+ DV E +L
Sbjct: 86 SLIVSPTKELAKQIHSVFESFLEHYPENLYPIRSQLLVGTNVKTVRDDVSDFMENKPQIL 145
Query: 56 IGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
IGTPGR+ D + ++ + +++LDEADRLLD+ F K + I++ LPK RRTGLFSA
Sbjct: 146 IGTPGRILDFL-KIPSVKTSMCSMVILDEADRLLDVSFLKDMENIMNILPKQRRTGLFSA 204
Query: 116 TQTEAVEELSKAGLRNPVRIEVRAESKS 143
T T A + + K GLRNPV++ V ++S++
Sbjct: 205 TITSAGDNIFKTGLRNPVKVTVNSKSQA 232
>sp|Q5AF95|DBP4_CANAL ATP-dependent RNA helicase DBP4 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP4 PE=3 SV=1
Length = 765
Score = 113 bits (282), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 100/168 (59%), Gaps = 8/168 (4%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SPTREL+ QI+ V I + L+ GG +V+ + +++ N+L+GTPGR
Sbjct: 123 ALIVSPTRELAVQIFEVLTK-IGKYNTFSAGLVTGGKDVQFEKERVSR--MNILVGTPGR 179
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ + ++ NL +LVLDEADR LDMGF+KQI I+ LP R+T LFSATQ+E+V
Sbjct: 180 ISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQTLLFSATQSESV 239
Query: 122 EELSKAGLRNPVRIEVRAESKSHHASASSQQLASS--KTPLGLHLEVL 167
+L++ L NP +I V S SA+ + L K PL L+VL
Sbjct: 240 NDLARLSLTNPNKIGV---SSDQEVSATPESLEQYYVKVPLDEKLDVL 284
>sp|Q6BXG0|DBP4_DEBHA ATP-dependent RNA helicase DBP4 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DBP4 PE=3 SV=2
Length = 766
Score = 113 bits (282), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 103/168 (61%), Gaps = 8/168 (4%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+IISPTREL+ QI+ V I + + L+ GG +VK + +++ + N+L+GTPGR
Sbjct: 121 ALIISPTRELAVQIFEVLVK-IGKHNNFSAGLVTGGKDVKYEKERVSK--MNILVGTPGR 177
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ + ++ NL +LVLDEADR LDMGF+KQI I+ LP R+T LFSATQ+++V
Sbjct: 178 ISQHLNESVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPPTRQTLLFSATQSDSV 237
Query: 122 EELSKAGLRNPVRIEVRAESKSHHASASSQQLASS--KTPLGLHLEVL 167
++L++ L NP R+ + S SA+ + L K PL L+VL
Sbjct: 238 KDLARLSLANPKRVGI---SSDQELSATPESLEQYYIKIPLDEKLDVL 282
>sp|Q6FKS8|SPB4_CANGA ATP-dependent rRNA helicase SPB4 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=SPB4 PE=3 SV=1
Length = 617
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 95/148 (64%), Gaps = 7/148 (4%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD----VKSMLLVGGVE--VKADVKKIEEEGANLL 55
+I++PTRELS QI +V F+ P+ ++S L+VG E V+ DV + +E +L
Sbjct: 86 SLILAPTRELSMQIQNVVSSFLEHYPEDQYPIRSQLVVGTNEKSVRDDVNTLLDERPQIL 145
Query: 56 IGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
IGTPGR+ D ++ V + ++VLDEADRLLD+ F K + I++ LPK RRTGLFSA
Sbjct: 146 IGTPGRVLDFLQSPSV-KTSSCGMVVLDEADRLLDVSFFKDVEKILNVLPKQRRTGLFSA 204
Query: 116 TQTEAVEELSKAGLRNPVRIEVRAESKS 143
T + A + K GLRNPV+I V ++ K+
Sbjct: 205 TISSAGTLIFKTGLRNPVKITVNSQGKN 232
>sp|P25808|SPB4_YEAST ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SPB4 PE=1 SV=1
Length = 606
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 88/148 (59%), Gaps = 7/148 (4%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD----VKSMLLVGGVE--VKADVKKIEEEGANLL 55
+II+PTRELS QI V F+ P +K LLVG E V+ DV +L
Sbjct: 86 SLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQIL 145
Query: 56 IGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
IGTPGR+ D ++ M + ++V+DEADRLLDM F K I+ LPK RRTGLFSA
Sbjct: 146 IGTPGRVLDFLQ-MPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTGLFSA 204
Query: 116 TQTEAVEELSKAGLRNPVRIEVRAESKS 143
T A ++ K GLRNPVRI V +++++
Sbjct: 205 TMRSAGSDIFKTGLRNPVRITVNSKNQA 232
>sp|A7A237|SPB4_YEAS7 ATP-dependent rRNA helicase SPB4 OS=Saccharomyces cerevisiae
(strain YJM789) GN=SPB4 PE=3 SV=1
Length = 606
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 88/148 (59%), Gaps = 7/148 (4%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD----VKSMLLVGGVE--VKADVKKIEEEGANLL 55
+II+PTRELS QI V F+ P +K LLVG E V+ DV +L
Sbjct: 86 SLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQIL 145
Query: 56 IGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115
IGTPGR+ D ++ M + ++V+DEADRLLDM F K I+ LPK RRTGLFSA
Sbjct: 146 IGTPGRVLDFLQ-MPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQRRTGLFSA 204
Query: 116 TQTEAVEELSKAGLRNPVRIEVRAESKS 143
T A ++ K GLRNPVRI V +++++
Sbjct: 205 TMRSAGSDIFKTGLRNPVRITVNSKNQA 232
>sp|Q8SR49|SPB4_ENCCU ATP-dependent rRNA helicase SPB4 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=SPB4 PE=3 SV=1
Length = 463
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 95/135 (70%), Gaps = 7/135 (5%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
++I+PTREL+ QI VA F DVK +GG+ ++ D K+++EE ++ +GTPGRL
Sbjct: 80 VVITPTRELALQIREVAGLF-----DVKCECFIGGMSIEEDYKRMKEE-FSIAVGTPGRL 133
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
+I+ + + F +L LVLDEAD+LL GF++++ ++++LP+ R TGLFSAT+ ++V+
Sbjct: 134 LEIVGK-ETKKFSSLSHLVLDEADKLLGFGFEEKLMQLLAKLPRNRVTGLFSATRNDSVD 192
Query: 123 ELSKAGLRNPVRIEV 137
+LS+ LRNPV I V
Sbjct: 193 KLSRVFLRNPVSINV 207
>sp|A5E3K3|DBP4_LODEL ATP-dependent RNA helicase DBP4 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=DBP4 PE=3 SV=1
Length = 775
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 100/168 (59%), Gaps = 8/168 (4%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SPTREL+ QI+ V I + L+ GG +V+ + ++I N+L+GTPGR
Sbjct: 123 ALIVSPTRELAVQIFEVLAK-IGKYNSFSAGLVTGGKDVQYEKERISR--MNILVGTPGR 179
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ + ++ NL +LVLDEADR LDMGF+KQI I++ LP+ R+T LFSAT T++V
Sbjct: 180 ISQHLNESVGMETSNLQVLVLDEADRCLDMGFRKQIDNILNHLPRTRQTLLFSATHTDSV 239
Query: 122 EELSKAGLRNPVRIEVRAESKSHHASASSQQLASS--KTPLGLHLEVL 167
++L++ L NP RI S SA + L K PL L+VL
Sbjct: 240 QDLARLSLTNPKRI---GTSSDQDISAIPESLDQYYVKVPLNEKLDVL 284
>sp|A7F2S3|SPB4_SCLS1 ATP-dependent rRNA helicase spb4 OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=spb4 PE=3 SV=1
Length = 625
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 94/161 (58%), Gaps = 25/161 (15%)
Query: 2 GMIISPTRELSAQIYHVAQPFI----------------------STLPDVKSMLLVGGVE 39
+I+SPTREL+ QI+ V + STL V S LL+GG
Sbjct: 90 AIIVSPTRELATQIHSVLTSLLAFHEPSAGALKPLEEGEKRKPSSTL-RVVSQLLLGGTT 148
Query: 40 VKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRLLDMGFQKQI 97
A D+ + + NLLI TPGRL +++ V + +LVLDEADRLLD+GF+ +
Sbjct: 149 TPAQDLSRFLKNSPNLLISTPGRLLELLSSPHVHCPQSSFEVLVLDEADRLLDLGFKDDL 208
Query: 98 SYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138
I+SRLPK RRTGLFSA+ +EAV E+ + GLRNPV+I V+
Sbjct: 209 QKILSRLPKQRRTGLFSASVSEAVGEIVRVGLRNPVKIAVK 249
>sp|Q2UHB7|DBP4_ASPOR ATP-dependent RNA helicase dbp4 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=dbp4 PE=3 SV=1
Length = 796
Score = 110 bits (275), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 5/166 (3%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SPTREL+ QI+ V + I + L++GG +K + +++ N+L+ TPGR
Sbjct: 120 ALILSPTRELAIQIFEVLRK-IGRYHTFSAGLIIGGKSLKEEQERLGR--MNILVCTPGR 176
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ +++ + D NL +LVLDEADR+LDMGFQK + I+ LPK R+T LFSATQT+ V
Sbjct: 177 MLQHLDQTAMFDVFNLQMLVLDEADRILDMGFQKTVDAIVGHLPKERQTLLFSATQTKKV 236
Query: 122 EELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEVL 167
+L++ L++P + V + S A+ S+ Q TPL L+VL
Sbjct: 237 SDLARLSLQDPEYVAVHETASS--ATPSTLQQHYVVTPLSQKLDVL 280
>sp|A1CL59|SPB4_ASPCL ATP-dependent rRNA helicase spb4 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=spb4 PE=3 SV=1
Length = 639
Score = 109 bits (273), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 96/168 (57%), Gaps = 26/168 (15%)
Query: 2 GMIISPTRELSAQIYHVAQPFI-------------------------STLPDVKSMLLVG 36
+IISPTREL++QI+ V Q + STL V +LL G
Sbjct: 90 AIIISPTRELASQIHSVMQSLLAFHPPSAAAMTPLDDDDAPRQKFPSSTLKVVPQLLLGG 149
Query: 37 GVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRLLDMGFQK 95
D+ + + N+L+ TPGRL +++ V + +LVLDEADRLLD+GF++
Sbjct: 150 STTPAEDLSRFLKLSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKE 209
Query: 96 QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKS 143
+ I+ RLPK RRTGLFSA+ +EAV+++ + GLRNPV+I V+ + S
Sbjct: 210 TLQNILRRLPKQRRTGLFSASVSEAVDQIVRVGLRNPVKIMVKVKGTS 257
>sp|A1D699|SPB4_NEOFI ATP-dependent rRNA helicase spb4 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=spb4
PE=3 SV=1
Length = 640
Score = 109 bits (273), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 95/168 (56%), Gaps = 26/168 (15%)
Query: 2 GMIISPTRELSAQIYHVAQPFI-------------------------STLPDVKSMLLVG 36
+IISPTREL++QIY+V + STL V +LL G
Sbjct: 90 AIIISPTRELASQIYNVLSSLLAFHPPSAAAINPSEDDDAPRPKFPSSTLKVVPQLLLGG 149
Query: 37 GVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRLLDMGFQK 95
D+ + N+L+ TPGRL +++ V + +LVLDEADRLLD+GF++
Sbjct: 150 STTPAEDLSTFLKRSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKE 209
Query: 96 QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKS 143
+ I+ RLPK RRTGLFSA+ +EAV+++ + GLRNPV++ V+ + S
Sbjct: 210 TLQNILRRLPKQRRTGLFSASVSEAVDQIVRVGLRNPVKVMVKVKGGS 257
>sp|Q4WYJ7|SPB4_ASPFU ATP-dependent rRNA helicase spb4 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=spb4
PE=3 SV=2
Length = 640
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 95/168 (56%), Gaps = 26/168 (15%)
Query: 2 GMIISPTRELSAQIYHVAQPFI-------------------------STLPDVKSMLLVG 36
+IISPTREL++QIY+V + STL V +LL G
Sbjct: 90 AIIISPTRELASQIYNVLSSLLAFHPPSAAAINPSEDDDAPRPKFPSSTLKVVPQLLLGG 149
Query: 37 GVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRLLDMGFQK 95
D+ + N+L+ TPGRL +++ V + +LVLDEADRLLD+GF++
Sbjct: 150 STTPAEDLSTFLKRSPNVLVSTPGRLLELLSSPHVHCPQSSFEMLVLDEADRLLDLGFKE 209
Query: 96 QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKS 143
+ I+ RLPK RRTGLFSA+ +EAV+++ + GLRNPV++ V+ + S
Sbjct: 210 TLQNILRRLPKQRRTGLFSASVSEAVDQIVRVGLRNPVKVMVKVKGGS 257
>sp|A7TJ71|DBP4_VANPO ATP-dependent RNA helicase DBP4 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DBP4 PE=3 SV=1
Length = 768
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 90/130 (69%), Gaps = 3/130 (2%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+IISPTREL+ QIY V I T + L++GG +VK ++++I + N+LIGTPGR
Sbjct: 116 ALIISPTRELAMQIYEVLLK-IGTSTSFSAGLVIGGKDVKFEMERISK--INILIGTPGR 172
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ M++ L+ NL +LVLDEADR LDMGF+K + I+S LP R+T LFSATQ++++
Sbjct: 173 ILQHMDQAIGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSNLPPTRQTLLFSATQSQSL 232
Query: 122 EELSKAGLRN 131
E+L++ L +
Sbjct: 233 EDLARLSLTD 242
>sp|A2QE29|SPB4_ASPNC ATP-dependent rRNA helicase spb4 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=spb4 PE=3 SV=2
Length = 642
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 96/169 (56%), Gaps = 27/169 (15%)
Query: 2 GMIISPTRELSAQIYHV-------------------------AQPFISTLPDVKSMLLVG 36
+IISPTREL++QIY+V Q F S+ V LL+G
Sbjct: 90 AIIISPTRELASQIYNVLTSLLAFHPPSASTLKPSDDDDDAPRQKFPSSTLKVVPQLLLG 149
Query: 37 GVEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRLLDMGFQ 94
G A D+ + NLL+ TPGRL +++ V + +LV+DEADRLLD+GF+
Sbjct: 150 GSTTPAEDLSTFLKRSPNLLVSTPGRLLELLSSPHVHCPQSSFEMLVMDEADRLLDLGFK 209
Query: 95 KQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKS 143
+ I+ RLPK RRTGLFSA+ +EAV+++ + GLRNPV++ V+ + S
Sbjct: 210 DTLQNILRRLPKQRRTGLFSASVSEAVDQIVRVGLRNPVKVMVKVKGTS 258
>sp|Q0CMM5|DBP4_ASPTN ATP-dependent RNA helicase dbp4 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=dbp4 PE=3 SV=2
Length = 804
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 104/166 (62%), Gaps = 5/166 (3%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SPTREL+ QI+ V + + + L++GG +K + +++ + N+L+ TPGR
Sbjct: 121 ALILSPTRELAIQIFEVLRK-VGRYHHFSAGLVIGGKSLKEEQERLGK--MNILVCTPGR 177
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ +++ + D NL +LVLDEADR++DMGFQK + II LPK R+T LFSATQT+ V
Sbjct: 178 MLQHLDQTALFDTYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPKERQTMLFSATQTKKV 237
Query: 122 EELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEVL 167
+L++ L++P + V + S A+ S+ Q TPL L++L
Sbjct: 238 SDLARLSLQDPEYVAVHEAAAS--ATPSTLQQHYVVTPLPQKLDIL 281
>sp|Q1E1R7|SPB4_COCIM ATP-dependent rRNA helicase SPB4 OS=Coccidioides immitis (strain
RS) GN=SPB4 PE=3 SV=2
Length = 653
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 93/168 (55%), Gaps = 31/168 (18%)
Query: 2 GMIISPTRELSAQIYHV--------------AQPFIS--------TLPDVKS-------M 32
+I+SPTREL+ QIY V QP S TLP S
Sbjct: 93 AIIVSPTRELAEQIYKVLLSLLAFHAPSAAAIQPSTSDETADGETTLPSYPSSTLKVVPQ 152
Query: 33 LLVGGVEVKA-DVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRLLD 90
LL+GG A D+ + NL + TPGRL +++ V + +LVLDEADRLLD
Sbjct: 153 LLLGGATTPAQDLSTFLKRSPNLFVSTPGRLLELLSSPHVHCPQTSFEVLVLDEADRLLD 212
Query: 91 MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138
+GF+ + ++RLPK RRTGLFSAT ++AV+++ + GLRNPV+I V+
Sbjct: 213 LGFKDDLQKTLARLPKQRRTGLFSATVSDAVDQIIRVGLRNPVKIAVK 260
>sp|A6RMZ2|SPB4_BOTFB ATP-dependent rRNA helicase spb4 OS=Botryotinia fuckeliana (strain
B05.10) GN=spb4 PE=3 SV=1
Length = 626
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 91/160 (56%), Gaps = 23/160 (14%)
Query: 2 GMIISPTRELSAQIYHVA--------------QPF--------ISTLPDVKSMLLVGGVE 39
+I+SPTREL+ QI+ V QP STL + +LL G
Sbjct: 90 AIIVSPTRELATQIHSVLTSLLKFHEPSAEALQPLEEGEKRKPSSTLRVIPQLLLGGTTT 149
Query: 40 VKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVILVLDEADRLLDMGFQKQIS 98
D+ + + NLLI TPGRL +++ V + +LVLDEADRLLD+GF+ +
Sbjct: 150 PAQDLSRFLKNSPNLLISTPGRLLELLSSPHVHCPQSSFEVLVLDEADRLLDLGFKDDLQ 209
Query: 99 YIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138
I+ RLPK RRTGLFSA+ +EAV E+ + GLRNPV+I V+
Sbjct: 210 KILGRLPKQRRTGLFSASVSEAVGEIVRVGLRNPVKIAVK 249
>sp|A5DGM4|SPB4_PICGU ATP-dependent rRNA helicase SPB4 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=SPB4 PE=3 SV=2
Length = 601
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 91/149 (61%), Gaps = 9/149 (6%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPD----VKSMLLVGGVE-VKADVKKIEEEGANLLI 56
G++ISPTREL+ QI V + P+ +K+ L+VG + V+ D+ E ++I
Sbjct: 91 GIVISPTRELANQINTVFHTLLQFYPEDQPPIKTQLIVGSLATVREDLNAFAENKPQIII 150
Query: 57 GTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116
TPGRL D + + + ++VLDEADRLLD+ FQ + I+ +LPK RRTGLFSAT
Sbjct: 151 ATPGRLLDFFSS-NAVKRSTVEMVVLDEADRLLDISFQNDVVSILKKLPKQRRTGLFSAT 209
Query: 117 QTEAVEELSKAGLRNPVRIEV---RAESK 142
+ A + + + G+ NPV+I V +AESK
Sbjct: 210 LSSAGDSIFRTGMSNPVKISVNSNKAESK 238
>sp|Q54S03|DDX18_DICDI Probable ATP-dependent RNA helicase ddx18 OS=Dictyostelium
discoideum GN=ddx18 PE=3 SV=1
Length = 602
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 92/139 (66%), Gaps = 3/139 (2%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+IISPTREL+ QIY VA+ + +++GG K + +++E+ G NLL+ TPGRL
Sbjct: 195 IIISPTRELALQIYGVARELMKYHTQTHG-IVIGGASKKPEEERLEK-GVNLLVATPGRL 252
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
D ++ +NL L++DEADR+L++GF++++ II ++PK R+T LFSATQT V+
Sbjct: 253 LDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKKVPKTRQTMLFSATQTRKVD 312
Query: 123 ELSKAGLRN-PVRIEVRAE 140
+++K L N PV + V E
Sbjct: 313 DIAKVSLNNSPVYVGVDDE 331
>sp|Q59N29|SPB41_CANAL ATP-dependent rRNA helicase SPB41 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=SPB41 PE=3 SV=1
Length = 631
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 6/175 (3%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPD-----VKSMLLVGGV-EVKADVKKIEEEGANL 54
+ +++SPTREL+ QI V + LP+ + + LLVG + V+ D+ + +
Sbjct: 95 LSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQI 154
Query: 55 LIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114
LIGTPGR+ + + + +L I++LDEAD+LLD F+K + I+ +LPK RRTGLFS
Sbjct: 155 LIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINILKKLPKQRRTGLFS 214
Query: 115 ATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEVLRL 169
AT + A + + G+ NPV+++V++++ S S + L S + L++ L
Sbjct: 215 ATISSAGNTIFRTGMNNPVKVQVKSKNYFGEQSNSPKSLQLSYMMINPELKITTL 269
>sp|Q59NP8|SPB42_CANAL ATP-dependent rRNA helicase SPB42 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=SPB42 PE=3 SV=1
Length = 631
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 6/175 (3%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPD-----VKSMLLVGGV-EVKADVKKIEEEGANL 54
+ +++SPTREL+ QI V + LP+ + + LLVG + V+ D+ + +
Sbjct: 95 LSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQI 154
Query: 55 LIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114
LIGTPGR+ + + + +L I++LDEAD+LLD F+K + I+ +LPK RRTGLFS
Sbjct: 155 LIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINILKKLPKQRRTGLFS 214
Query: 115 ATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEVLRL 169
AT + A + + G+ NPV+++V++++ S S + L S + L++ L
Sbjct: 215 ATISSAGNTIFRTGMNNPVKVQVKSKNYFGEQSNSPKSLQLSYMMINPELKITTL 269
>sp|Q4P5U4|DBP4_USTMA ATP-dependent RNA helicase DBP4 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=DBP4 PE=3 SV=1
Length = 869
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 91/136 (66%), Gaps = 3/136 (2%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
++ISPTREL+ QI+ V + I + + L++GG +VK + ++ N+LI TPGRL
Sbjct: 134 LVISPTRELAIQIFEVLRK-IGSYHTFSAGLVIGGKDVKQEKDRLSR--INILIATPGRL 190
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
M++ D N+ +LVLDEADR+LDMGF + ++ I+ LP+ R+T LFSATQT+ V+
Sbjct: 191 LQHMDQTLGFDTSNVQVLVLDEADRILDMGFSRTLNAIVENLPRNRQTMLFSATQTKRVK 250
Query: 123 ELSKAGLRNPVRIEVR 138
+L++ L++P + VR
Sbjct: 251 DLARLSLQDPEYVAVR 266
>sp|Q7RZ35|DBP4_NEUCR ATP-dependent RNA helicase dbp-4 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=dbp-4 PE=3 SV=1
Length = 823
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 104/178 (58%), Gaps = 22/178 (12%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+IISPTREL+ QI+ V + I + L++GG +K + +++ N+L+ TPGR
Sbjct: 132 ALIISPTRELAVQIFEVLRK-IGRNHSFSAGLVIGGKSLKEEAERLGR--MNILVCTPGR 188
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ +++ D NL +LVLDEADR++DMGFQ+ + ++ LPK R+T LFSATQ++ V
Sbjct: 189 MLQHLDQTAGFDVDNLQMLVLDEADRIMDMGFQQAVDALVEHLPKSRQTLLFSATQSKRV 248
Query: 122 EELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEVL------RLNIFW 173
+L++ L++P + V H A+AS+ TP+GL + +L+ W
Sbjct: 249 SDLARLSLKDPEYVSV------HEAAASA-------TPVGLQQHYIVTPLPEKLDTLW 293
>sp|A5E2I8|SPB4_LODEL ATP-dependent rRNA helicase SPB4 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=SPB4 PE=3 SV=1
Length = 637
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 110/186 (59%), Gaps = 15/186 (8%)
Query: 1 MGMIISPTRELSAQIYHVAQPFISTLPD-------VKSMLLVGGV-EVKADVKKIEEEGA 52
+ ++++PTREL+ QI V + LP+ +K+ LLVG + V+ D+ +E
Sbjct: 95 LAIVMAPTRELAKQIQMVFDKVLELLPEEDSYEPRIKTQLLVGFLGNVREDLDSYQENRP 154
Query: 53 NLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGL 112
+LI TPGRL D M + ++ +L I++LDEAD+LLDM F+ + I+ LPK RRTGL
Sbjct: 155 QILIATPGRLLDFMS-LQIVKTSSLEIVILDEADKLLDMSFETDVIKILKMLPKQRRTGL 213
Query: 113 FSATQTEAVEELSKAGLRNPVRIEVRAES---KSHHASAS---SQQLASSKTPLGLHLEV 166
FSAT + A + + + G+ NPV+++V+ ++ + ++A S S + + L L++
Sbjct: 214 FSATISAAGDTIFRTGMNNPVKLQVKTKNFLGEQNNAPTSLQLSYMMIEPEHKLTTMLQM 273
Query: 167 LRLNIF 172
LR N F
Sbjct: 274 LRDNQF 279
>sp|A5DLF4|DBP4_PICGU ATP-dependent RNA helicase DBP4 OS=Meyerozyma guilliermondii
(strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC
10279 / NRRL Y-324) GN=DBP4 PE=3 SV=2
Length = 754
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 88/139 (63%), Gaps = 3/139 (2%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SPTREL+ Q + V I + L+ GG +VK + ++I N+LIGTPGR
Sbjct: 121 ALIVSPTRELAVQTFEVLTK-IGKYNSFSAGLVTGGKDVKYEKERISR--MNILIGTPGR 177
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ + ++ NL +LVLDEADR LDMGF+KQI I+ LP R+T LFSATQ++ V
Sbjct: 178 ISQHLNEAVGMETSNLQVLVLDEADRCLDMGFRKQIDNILGHLPVTRQTLLFSATQSDNV 237
Query: 122 EELSKAGLRNPVRIEVRAE 140
++L++ L NP R+ V ++
Sbjct: 238 KDLARLSLVNPKRVGVSSD 256
>sp|Q80Y44|DDX10_MOUSE Probable ATP-dependent RNA helicase DDX10 OS=Mus musculus GN=Ddx10
PE=1 SV=2
Length = 875
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 91/140 (65%), Gaps = 3/140 (2%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+IISPTREL+ Q + V + + D + L++GG ++K + ++I N+L+ TPGRL
Sbjct: 145 LIISPTRELAYQTFEVLRK-VGKNHDFSAGLIIGGKDLKHEAERIN--NINILVCTPGRL 201
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
M+ NL +LVLDEADR+LDMGF ++ II LPK R+T LFSATQT++V+
Sbjct: 202 LQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSVK 261
Query: 123 ELSKAGLRNPVRIEVRAESK 142
+L++ L++P + V ++K
Sbjct: 262 DLARLSLKDPEYVWVHEKAK 281
>sp|A3GGE9|DBP4_PICST ATP-dependent RNA helicase DBP4 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=DBP4 PE=3 SV=2
Length = 765
Score = 107 bits (266), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 8/168 (4%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SPTREL+ Q + V I + L+ GG +V+ + +++ N+L+GTPGR
Sbjct: 122 ALIVSPTRELAVQTFEVLTK-IGKYNTFSAGLVTGGKDVQYEKERVSR--MNILVGTPGR 178
Query: 62 LYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121
+ + ++ NL +LVLDEADR LDMGF+KQI I+ LP R+T LFSAT +++V
Sbjct: 179 ISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNIVGHLPPTRQTLLFSATVSDSV 238
Query: 122 EELSKAGLRNPVRIEVRAESKSHHASASSQQLASS--KTPLGLHLEVL 167
++L++ L NP RI V S SA+ + L + PL L+VL
Sbjct: 239 KDLARLSLTNPKRIGV---SSDQDVSATPESLDQYYIRIPLDEKLDVL 283
>sp|Q4IAS1|DBP4_GIBZE ATP-dependent RNA helicase DBP4 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=DBP4 PE=3
SV=1
Length = 793
Score = 107 bits (266), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 102/165 (61%), Gaps = 5/165 (3%)
Query: 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62
+IISPTREL+AQI+ V + + T + L++GG +K + ++++ N+L+ TPGR+
Sbjct: 127 LIISPTRELAAQIFEVLRK-VGTKHSFSAGLVIGGKSLKEEAERLDR--MNILVCTPGRM 183
Query: 63 YDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122
++ D NL ILVLDEADR++DMGFQ + +I LP+ R+T +FSATQ++ V
Sbjct: 184 LQHFDQTAGFDANNLQILVLDEADRIMDMGFQSAVDALIEHLPRERQTLMFSATQSKKVS 243
Query: 123 ELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEVL 167
+L++ L++P + V + S A+ ++ Q TPL L+ L
Sbjct: 244 DLARLSLKDPEYVSVHEAAVS--ATPTNLQQHYIVTPLTEKLDTL 286
>sp|P34640|DDX55_CAEEL Probable ATP-dependent RNA helicase DDX55 homolog OS=Caenorhabditis
elegans GN=ZK512.2 PE=3 SV=2
Length = 578
Score = 107 bits (266), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 89/145 (61%), Gaps = 4/145 (2%)
Query: 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR 61
+I+SP+REL +QI V QPF L ++ + GG +V ++K + + N+L+ TPGR
Sbjct: 83 ALILSPSRELCSQIVSVIQPFAEKL-NLTVETVTGGQKVDKNIKMFKNKNVNILVATPGR 141
Query: 62 LYDIMERMDVL---DFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118
L+ I++ L R L +LV+DEADR ++ F+ + I+S +PK RRTGLFSATQ
Sbjct: 142 LFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQRRTGLFSATQV 201
Query: 119 EAVEELSKAGLRNPVRIEVRAESKS 143
+ ++L GLRN +++V E S
Sbjct: 202 KEEDDLMVFGLRNAKQVKVAQERNS 226
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,086,353
Number of Sequences: 539616
Number of extensions: 2201447
Number of successful extensions: 10834
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 7670
Number of HSP's gapped (non-prelim): 1265
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)