Query 029993
Match_columns 184
No_of_seqs 128 out of 1461
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0345 ATP-dependent RNA heli 100.0 3.6E-37 7.7E-42 253.2 13.5 170 2-184 82-253 (567)
2 KOG0330 ATP-dependent RNA heli 100.0 1.7E-36 3.7E-41 244.5 12.0 164 1-181 131-295 (476)
3 KOG0343 RNA Helicase [RNA proc 100.0 1.1E-35 2.4E-40 248.5 14.4 167 1-183 143-310 (758)
4 KOG0338 ATP-dependent RNA heli 100.0 7.1E-35 1.5E-39 241.8 13.5 153 2-171 255-407 (691)
5 COG0513 SrmB Superfamily II DN 100.0 3.3E-34 7.1E-39 246.9 17.1 156 2-172 102-257 (513)
6 KOG0328 Predicted ATP-dependen 100.0 1.9E-34 4.1E-39 224.9 13.8 158 1-176 97-255 (400)
7 KOG0331 ATP-dependent RNA heli 100.0 3.5E-34 7.5E-39 241.7 13.5 137 1-140 167-304 (519)
8 KOG0342 ATP-dependent RNA heli 100.0 1.8E-33 4E-38 232.3 14.0 170 1-184 156-327 (543)
9 KOG0339 ATP-dependent RNA heli 100.0 4.2E-32 9.1E-37 225.3 15.5 137 1-140 298-434 (731)
10 KOG0326 ATP-dependent RNA heli 100.0 3.1E-32 6.6E-37 215.7 9.7 153 1-172 155-307 (459)
11 KOG0348 ATP-dependent RNA heli 100.0 1E-31 2.2E-36 224.1 8.8 172 1-173 213-407 (708)
12 KOG0346 RNA helicase [RNA proc 100.0 5.1E-31 1.1E-35 215.7 11.9 166 1-182 95-263 (569)
13 KOG0329 ATP-dependent RNA heli 100.0 2E-31 4.4E-36 205.7 8.9 154 2-171 113-267 (387)
14 KOG4284 DEAD box protein [Tran 100.0 1.2E-29 2.5E-34 215.6 13.4 154 1-172 95-249 (980)
15 KOG0341 DEAD-box protein abstr 100.0 1.5E-30 3.3E-35 210.6 6.4 147 1-149 248-399 (610)
16 KOG0335 ATP-dependent RNA heli 100.0 2.7E-29 5.9E-34 209.4 12.1 163 1-181 154-323 (482)
17 KOG0333 U5 snRNP-like RNA heli 100.0 8.7E-29 1.9E-33 206.2 12.6 161 1-179 324-510 (673)
18 KOG0327 Translation initiation 100.0 6.7E-29 1.5E-33 200.3 10.2 157 1-174 96-252 (397)
19 PRK11634 ATP-dependent RNA hel 100.0 1.3E-27 2.9E-32 209.9 19.2 154 1-171 76-229 (629)
20 KOG0336 ATP-dependent RNA heli 100.0 2.1E-28 4.5E-33 199.3 12.6 152 2-171 297-448 (629)
21 PTZ00110 helicase; Provisional 100.0 2E-27 4.4E-32 206.3 17.1 154 1-171 205-359 (545)
22 PRK11776 ATP-dependent RNA hel 100.0 3.1E-27 6.7E-32 201.6 17.9 153 1-171 74-226 (460)
23 KOG0337 ATP-dependent RNA heli 100.0 1.8E-28 4E-33 199.8 8.5 162 2-181 93-255 (529)
24 PRK04837 ATP-dependent RNA hel 99.9 7.1E-27 1.5E-31 197.5 17.1 152 1-170 85-238 (423)
25 PLN00206 DEAD-box ATP-dependen 99.9 1.3E-26 2.9E-31 200.3 17.6 152 1-171 198-349 (518)
26 PRK10590 ATP-dependent RNA hel 99.9 1.4E-26 3E-31 197.5 17.2 153 1-171 77-229 (456)
27 PRK04537 ATP-dependent RNA hel 99.9 3.5E-26 7.5E-31 199.4 16.9 154 1-171 86-241 (572)
28 KOG0340 ATP-dependent RNA heli 99.9 5.9E-27 1.3E-31 187.6 8.8 160 1-177 77-241 (442)
29 KOG0347 RNA helicase [RNA proc 99.9 2.9E-26 6.4E-31 192.1 12.9 165 1-182 265-460 (731)
30 PRK01297 ATP-dependent RNA hel 99.9 2.4E-25 5.2E-30 190.8 17.9 154 1-171 164-319 (475)
31 PRK11192 ATP-dependent RNA hel 99.9 5.2E-25 1.1E-29 186.7 17.8 152 2-171 76-228 (434)
32 KOG0350 DEAD-box ATP-dependent 99.9 3.1E-26 6.7E-31 190.1 9.8 170 1-182 217-425 (620)
33 KOG0334 RNA helicase [RNA proc 99.9 3.4E-26 7.3E-31 202.8 9.6 166 1-183 440-609 (997)
34 KOG0332 ATP-dependent RNA heli 99.9 1E-25 2.3E-30 181.5 7.2 157 1-177 162-321 (477)
35 PTZ00424 helicase 45; Provisio 99.9 7.6E-23 1.6E-27 171.5 19.0 153 1-171 98-250 (401)
36 cd00268 DEADc DEAD-box helicas 99.9 2.4E-21 5.2E-26 148.2 16.1 131 2-135 72-202 (203)
37 PRK09401 reverse gyrase; Revie 99.9 7.3E-21 1.6E-25 176.1 15.3 149 1-170 125-314 (1176)
38 TIGR02621 cas3_GSU0051 CRISPR- 99.9 2.4E-20 5.2E-25 166.3 16.2 132 1-140 63-238 (844)
39 PF00270 DEAD: DEAD/DEAH box h 99.8 2.9E-19 6.3E-24 132.4 14.8 121 2-124 47-169 (169)
40 KOG0349 Putative DEAD-box RNA 99.8 5.8E-20 1.3E-24 151.3 8.2 154 1-171 288-450 (725)
41 TIGR03817 DECH_helic helicase/ 99.8 2.1E-18 4.6E-23 154.4 15.9 130 1-136 83-222 (742)
42 PRK14701 reverse gyrase; Provi 99.8 1.5E-18 3.3E-23 164.2 13.9 152 1-172 124-317 (1638)
43 TIGR01054 rgy reverse gyrase. 99.8 7.7E-18 1.7E-22 156.3 15.2 148 1-171 123-313 (1171)
44 PRK09751 putative ATP-dependen 99.8 3.3E-17 7.2E-22 153.4 17.7 134 1-136 39-188 (1490)
45 KOG0344 ATP-dependent RNA heli 99.8 5.9E-19 1.3E-23 149.3 4.7 154 1-171 211-370 (593)
46 PRK10689 transcription-repair 99.8 4.2E-17 9.2E-22 151.0 17.0 128 1-140 651-781 (1147)
47 TIGR00580 mfd transcription-re 99.7 4.6E-17 9.9E-22 148.1 16.2 128 1-140 502-632 (926)
48 PRK00254 ski2-like helicase; P 99.7 2E-16 4.3E-21 141.8 12.5 120 1-128 70-189 (720)
49 PRK10917 ATP-dependent DNA hel 99.7 1.3E-15 2.9E-20 135.7 15.9 115 1-127 312-429 (681)
50 PRK13767 ATP-dependent helicas 99.7 3.2E-16 7E-21 142.8 11.9 125 1-128 86-227 (876)
51 PRK02362 ski2-like helicase; P 99.7 5.5E-16 1.2E-20 139.3 11.4 120 1-128 69-191 (737)
52 PHA02653 RNA helicase NPH-II; 99.6 3.5E-15 7.5E-20 131.9 12.7 125 1-138 224-351 (675)
53 TIGR00643 recG ATP-dependent D 99.6 5.4E-15 1.2E-19 130.8 13.3 114 1-125 286-404 (630)
54 TIGR01970 DEAH_box_HrpB ATP-de 99.6 3.7E-14 8E-19 128.0 15.4 126 1-138 47-174 (819)
55 PRK01172 ski2-like helicase; P 99.6 1.2E-14 2.6E-19 129.6 12.1 120 1-128 67-189 (674)
56 PRK11664 ATP-dependent RNA hel 99.6 4.1E-14 8.8E-19 127.8 14.9 126 1-138 50-177 (812)
57 smart00487 DEXDc DEAD-like hel 99.6 3.4E-13 7.4E-18 100.9 16.3 136 2-139 57-192 (201)
58 COG1205 Distinct helicase fami 99.5 2E-13 4.4E-18 123.7 14.9 133 1-136 117-260 (851)
59 TIGR00614 recQ_fam ATP-depende 99.5 1.7E-13 3.8E-18 117.5 11.5 131 1-136 53-193 (470)
60 PRK12899 secA preprotein trans 99.5 1E-13 2.2E-18 124.4 9.1 84 2-90 138-229 (970)
61 PLN03137 ATP-dependent DNA hel 99.5 1.9E-12 4.1E-17 118.5 15.9 125 1-130 502-639 (1195)
62 COG1201 Lhr Lhr-like helicases 99.5 2.9E-13 6.3E-18 120.8 10.2 127 1-131 75-206 (814)
63 PHA02558 uvsW UvsW helicase; P 99.5 2.5E-13 5.5E-18 117.4 9.5 103 1-120 160-262 (501)
64 COG1204 Superfamily II helicas 99.5 2.8E-13 6E-18 121.4 9.4 124 2-133 79-205 (766)
65 COG1111 MPH1 ERCC4-like helica 99.4 2.6E-12 5.5E-17 108.1 13.4 134 2-140 61-196 (542)
66 PRK13766 Hef nuclease; Provisi 99.4 1.7E-11 3.7E-16 111.0 14.2 115 2-120 61-175 (773)
67 PRK13104 secA preprotein trans 99.4 4.1E-12 9E-17 114.1 9.9 85 1-89 125-215 (896)
68 TIGR01587 cas3_core CRISPR-ass 99.3 3.3E-12 7.1E-17 105.8 8.5 126 1-131 31-179 (358)
69 TIGR00963 secA preprotein tran 99.3 3.2E-12 6.9E-17 113.2 8.8 85 1-90 99-190 (745)
70 TIGR01389 recQ ATP-dependent D 99.3 2.7E-11 5.9E-16 106.7 13.3 122 2-130 56-185 (591)
71 cd00046 DEXDc DEAD-like helica 99.3 7.1E-11 1.5E-15 83.4 13.1 112 2-117 33-144 (144)
72 TIGR03158 cas3_cyano CRISPR-as 99.3 1.3E-10 2.9E-15 96.5 16.0 138 2-139 42-215 (357)
73 PRK11057 ATP-dependent DNA hel 99.3 2.4E-11 5.2E-16 107.3 12.0 129 1-136 67-205 (607)
74 PRK05580 primosome assembly pr 99.3 6.7E-11 1.4E-15 105.6 12.4 113 1-125 192-312 (679)
75 COG1197 Mfd Transcription-repa 99.2 7.3E-11 1.6E-15 107.7 11.7 128 1-140 645-775 (1139)
76 PRK09200 preprotein translocas 99.2 3.7E-11 8.1E-16 107.7 8.8 86 1-89 121-212 (790)
77 PRK11131 ATP-dependent RNA hel 99.2 1.2E-10 2.6E-15 108.5 10.5 113 8-138 131-246 (1294)
78 TIGR03714 secA2 accessory Sec 99.2 1E-10 2.2E-15 104.2 9.6 88 1-90 113-209 (762)
79 COG1200 RecG RecG-like helicas 99.1 5.7E-10 1.2E-14 97.2 11.6 115 1-127 313-431 (677)
80 COG4581 Superfamily II RNA hel 99.1 6.4E-10 1.4E-14 101.4 11.5 140 2-169 165-307 (1041)
81 PRK12904 preprotein translocas 99.1 4.4E-10 9.5E-15 100.9 8.7 85 1-89 124-214 (830)
82 TIGR00595 priA primosomal prot 99.1 1.9E-09 4E-14 93.4 12.2 112 1-125 27-147 (505)
83 COG1202 Superfamily II helicas 99.1 3.4E-10 7.4E-15 96.8 6.7 128 2-133 264-397 (830)
84 KOG0952 DNA/RNA helicase MER3/ 99.0 1.1E-09 2.4E-14 98.7 9.7 149 2-172 167-325 (1230)
85 PRK12898 secA preprotein trans 99.0 1.6E-09 3.4E-14 95.5 7.6 85 1-89 146-255 (656)
86 KOG0947 Cytoplasmic exosomal R 98.9 4E-09 8.7E-14 94.5 8.5 138 2-169 343-481 (1248)
87 PF06862 DUF1253: Protein of u 98.9 1.5E-08 3.2E-13 85.7 11.4 161 2-171 40-272 (442)
88 KOG0354 DEAD-box like helicase 98.9 6.2E-09 1.3E-13 92.0 9.0 131 2-137 109-241 (746)
89 PRK13107 preprotein translocas 98.9 4.1E-09 9E-14 95.0 7.7 84 2-90 126-216 (908)
90 KOG0948 Nuclear exosomal RNA h 98.8 2E-08 4.3E-13 88.3 6.9 135 2-168 175-312 (1041)
91 TIGR01967 DEAH_box_HrpA ATP-de 98.7 3.8E-07 8.1E-12 85.8 13.7 83 49-137 154-238 (1283)
92 KOG0951 RNA helicase BRR2, DEA 98.6 1.4E-07 3E-12 86.9 8.6 148 2-171 367-522 (1674)
93 PRK09694 helicase Cas3; Provis 98.5 8.9E-07 1.9E-11 81.0 10.6 126 2-128 334-492 (878)
94 KOG2340 Uncharacterized conser 98.4 4.8E-07 1E-11 77.2 6.5 130 2-132 296-494 (698)
95 PF04851 ResIII: Type III rest 98.4 9.9E-07 2.1E-11 65.5 7.5 110 2-118 53-183 (184)
96 COG1110 Reverse gyrase [DNA re 98.4 4.7E-06 1E-10 75.9 12.5 87 2-91 128-218 (1187)
97 PF14617 CMS1: U3-containing 9 98.4 6.3E-07 1.4E-11 70.8 6.3 81 2-85 129-210 (252)
98 TIGR00603 rad25 DNA repair hel 98.4 1.7E-06 3.7E-11 77.5 9.0 105 2-118 301-412 (732)
99 COG1061 SSL2 DNA or RNA helica 98.3 2.2E-06 4.7E-11 73.3 8.2 101 2-118 83-184 (442)
100 TIGR00348 hsdR type I site-spe 98.1 1.7E-05 3.8E-10 71.1 10.2 106 2-118 296-403 (667)
101 PF07652 Flavi_DEAD: Flaviviru 98.1 9.5E-06 2.1E-10 58.7 6.6 106 2-124 36-143 (148)
102 COG0514 RecQ Superfamily II DN 98.1 2.4E-05 5.3E-10 68.4 9.9 128 2-136 60-197 (590)
103 PF00176 SNF2_N: SNF2 family N 98.0 2.2E-05 4.7E-10 62.9 7.1 110 2-117 61-172 (299)
104 KOG0949 Predicted helicase, DE 98.0 2.2E-05 4.7E-10 71.4 7.3 114 2-120 559-674 (1330)
105 PRK11448 hsdR type I restricti 98.0 3.7E-05 8E-10 72.4 8.9 113 2-120 466-597 (1123)
106 PRK13103 secA preprotein trans 98.0 2.8E-05 6.1E-10 70.8 7.8 83 1-89 125-215 (913)
107 PLN03142 Probable chromatin-re 97.8 0.00043 9.2E-09 64.7 12.4 106 2-117 222-329 (1033)
108 KOG0385 Chromatin remodeling c 97.7 0.00061 1.3E-08 61.0 11.2 118 3-130 221-344 (971)
109 KOG0352 ATP-dependent DNA heli 97.6 0.00034 7.3E-09 58.9 7.6 134 2-140 64-211 (641)
110 TIGR03117 cas_csf4 CRISPR-asso 97.6 0.00071 1.5E-08 60.3 10.1 40 50-90 181-220 (636)
111 PRK14873 primosome assembly pr 97.5 0.0012 2.5E-08 59.4 11.0 115 1-126 190-312 (665)
112 PRK07246 bifunctional ATP-depe 97.5 0.00098 2.1E-08 61.3 10.5 87 1-90 293-450 (820)
113 PRK12906 secA preprotein trans 97.5 0.00034 7.3E-09 63.4 7.2 85 1-89 123-213 (796)
114 PRK12326 preprotein translocas 97.5 0.00034 7.4E-09 62.7 6.8 85 1-89 121-211 (764)
115 KOG0389 SNF2 family DNA-depend 97.4 0.0015 3.4E-08 58.6 10.5 116 3-126 452-572 (941)
116 KOG0351 ATP-dependent DNA heli 97.3 0.002 4.4E-08 59.7 10.6 129 2-136 307-451 (941)
117 KOG0950 DNA polymerase theta/e 97.3 0.0003 6.5E-09 64.0 5.0 122 2-131 272-399 (1008)
118 PF07517 SecA_DEAD: SecA DEAD- 97.3 0.0042 9.1E-08 49.7 10.9 84 2-89 121-210 (266)
119 KOG0387 Transcription-coupled 97.1 0.0031 6.6E-08 56.7 9.1 113 2-124 258-383 (923)
120 COG4098 comFA Superfamily II D 97.1 0.0086 1.9E-07 49.4 10.5 101 3-123 148-249 (441)
121 CHL00122 secA preprotein trans 97.1 0.0017 3.6E-08 59.3 6.8 84 2-89 120-209 (870)
122 COG1198 PriA Primosomal protei 97.0 0.0026 5.7E-08 57.4 7.9 113 1-125 247-367 (730)
123 PRK04914 ATP-dependent helicas 97.0 0.0024 5.1E-08 59.5 7.8 127 2-135 202-335 (956)
124 PRK12902 secA preprotein trans 97.0 0.003 6.5E-08 57.9 7.5 84 2-89 129-218 (939)
125 COG1643 HrpA HrpA-like helicas 96.9 0.02 4.3E-07 52.7 12.1 83 50-137 138-222 (845)
126 TIGR01407 dinG_rel DnaQ family 96.8 0.011 2.4E-07 54.7 10.5 39 51-90 416-454 (850)
127 COG1203 CRISPR-associated heli 96.5 0.01 2.2E-07 54.1 7.8 136 2-138 249-401 (733)
128 COG4096 HsdR Type I site-speci 96.5 0.0063 1.4E-07 55.1 6.2 117 2-135 218-339 (875)
129 KOG0391 SNF2 family DNA-depend 96.3 0.019 4E-07 54.1 8.1 105 3-117 669-775 (1958)
130 KOG0920 ATP-dependent RNA heli 96.2 0.068 1.5E-06 49.5 11.2 84 51-139 264-348 (924)
131 KOG0353 ATP-dependent DNA heli 96.1 0.045 9.8E-07 45.9 8.7 123 1-129 136-272 (695)
132 COG0610 Type I site-specific r 96.1 0.045 9.8E-07 51.4 9.7 107 2-118 306-414 (962)
133 KOG3089 Predicted DEAD-box-con 96.1 0.0099 2.1E-07 45.9 4.5 43 42-85 187-229 (271)
134 KOG0392 SNF2 family DNA-depend 95.9 0.045 9.9E-07 51.7 8.6 119 2-131 1034-1156(1549)
135 KOG4439 RNA polymerase II tran 95.9 0.011 2.5E-07 52.7 4.6 124 2-132 386-519 (901)
136 TIGR00596 rad1 DNA repair prot 95.9 0.028 6E-07 51.7 7.2 84 51-135 7-96 (814)
137 PRK10689 transcription-repair 95.8 0.056 1.2E-06 51.6 8.9 78 1-88 811-891 (1147)
138 TIGR02562 cas3_yersinia CRISPR 95.7 0.013 2.9E-07 54.6 4.4 77 51-128 562-646 (1110)
139 PF02399 Herpes_ori_bp: Origin 95.7 0.22 4.8E-06 45.6 11.7 118 2-132 81-205 (824)
140 TIGR00580 mfd transcription-re 95.4 0.095 2.1E-06 49.1 8.7 78 1-88 662-742 (926)
141 PF13872 AAA_34: P-loop contai 95.1 0.054 1.2E-06 44.0 5.6 114 2-125 94-228 (303)
142 KOG0951 RNA helicase BRR2, DEA 94.9 0.11 2.4E-06 49.5 7.6 108 2-120 1189-1302(1674)
143 TIGR00631 uvrb excinuclease AB 94.8 0.77 1.7E-05 41.6 12.4 113 2-126 445-562 (655)
144 PRK05580 primosome assembly pr 94.7 0.61 1.3E-05 42.4 11.6 94 18-118 442-550 (679)
145 PRK10917 ATP-dependent DNA hel 94.6 0.38 8.2E-06 43.7 10.2 81 1-88 473-561 (681)
146 TIGR00643 recG ATP-dependent D 94.5 0.42 9.2E-06 42.9 10.2 81 1-88 450-538 (630)
147 KOG0922 DEAH-box RNA helicase 94.5 0.9 2E-05 40.6 11.8 82 51-138 140-223 (674)
148 KOG1123 RNA polymerase II tran 94.2 0.21 4.6E-06 43.5 7.2 107 2-120 348-461 (776)
149 PRK04837 ATP-dependent RNA hel 94.1 0.33 7.2E-06 41.2 8.3 71 1-83 257-330 (423)
150 PRK04537 ATP-dependent RNA hel 94.1 0.45 9.8E-06 42.3 9.4 72 1-84 259-333 (572)
151 PRK15483 type III restriction- 93.9 0.44 9.6E-06 44.7 9.2 114 2-119 92-240 (986)
152 TIGR00595 priA primosomal prot 93.5 0.83 1.8E-05 40.0 9.8 69 16-91 272-345 (505)
153 PRK12903 secA preprotein trans 93.4 0.26 5.6E-06 45.6 6.7 84 2-89 122-211 (925)
154 PRK10590 ATP-dependent RNA hel 93.0 0.81 1.8E-05 39.4 9.0 70 1-82 247-319 (456)
155 COG0513 SrmB Superfamily II DN 92.8 0.77 1.7E-05 40.3 8.7 69 1-81 275-346 (513)
156 KOG0388 SNF2 family DNA-depend 92.7 0.57 1.2E-05 42.6 7.6 106 3-118 621-734 (1185)
157 KOG4150 Predicted ATP-dependen 92.7 0.22 4.7E-06 44.1 4.9 149 3-171 335-498 (1034)
158 TIGR00614 recQ_fam ATP-depende 92.5 0.85 1.8E-05 39.4 8.4 72 2-85 229-303 (470)
159 PRK11192 ATP-dependent RNA hel 92.5 0.79 1.7E-05 39.0 8.2 70 1-82 247-319 (434)
160 COG4098 comFA Superfamily II D 92.4 5.2 0.00011 33.5 12.3 109 2-123 308-422 (441)
161 PHA02653 RNA helicase NPH-II; 92.4 0.62 1.3E-05 42.3 7.7 71 1-81 397-469 (675)
162 KOG1001 Helicase-like transcri 92.1 0.5 1.1E-05 42.8 6.7 110 2-126 192-302 (674)
163 PF02463 SMC_N: RecF/RecN/SMC 92.1 0.16 3.4E-06 39.0 3.1 40 75-114 157-196 (220)
164 PF09848 DUF2075: Uncharacteri 92.0 1.5 3.2E-05 36.4 9.1 74 54-128 62-149 (352)
165 PTZ00110 helicase; Provisional 91.9 1 2.2E-05 39.8 8.4 70 1-82 379-451 (545)
166 COG1198 PriA Primosomal protei 91.8 1.9 4.1E-05 39.5 10.0 96 18-120 496-606 (730)
167 cd00079 HELICc Helicase superf 91.8 2 4.2E-05 29.4 8.3 73 2-86 31-106 (131)
168 PRK11634 ATP-dependent RNA hel 91.8 1.1 2.4E-05 40.3 8.5 70 1-82 247-319 (629)
169 TIGR01970 DEAH_box_HrpB ATP-de 91.7 1.1 2.4E-05 41.6 8.6 72 1-81 211-285 (819)
170 PRK11776 ATP-dependent RNA hel 91.7 1.2 2.5E-05 38.4 8.3 72 1-84 244-318 (460)
171 TIGR01054 rgy reverse gyrase. 91.6 0.81 1.8E-05 44.1 7.8 73 1-82 328-404 (1171)
172 PRK01297 ATP-dependent RNA hel 91.6 1.2 2.6E-05 38.5 8.3 71 1-83 337-410 (475)
173 PRK09401 reverse gyrase; Revie 91.2 0.51 1.1E-05 45.4 6.0 72 1-82 330-405 (1176)
174 PRK11057 ATP-dependent DNA hel 91.1 1.4 3E-05 39.5 8.4 69 2-82 239-310 (607)
175 PRK05298 excinuclease ABC subu 91.1 7 0.00015 35.4 12.9 76 1-88 448-526 (652)
176 KOG0925 mRNA splicing factor A 91.0 1.2 2.6E-05 38.8 7.4 78 57-138 133-219 (699)
177 PLN00206 DEAD-box ATP-dependen 90.9 1.5 3.3E-05 38.4 8.4 71 2-83 370-443 (518)
178 TIGR03158 cas3_cyano CRISPR-as 90.9 1.7 3.7E-05 36.2 8.3 68 2-83 275-342 (357)
179 PTZ00424 helicase 45; Provisio 90.8 1.4 3.1E-05 36.8 7.9 70 1-82 269-341 (401)
180 KOG0384 Chromodomain-helicase 90.7 2.5 5.4E-05 40.6 9.7 128 3-141 424-561 (1373)
181 PRK11664 ATP-dependent RNA hel 90.6 1.4 3E-05 40.9 8.1 71 2-81 215-288 (812)
182 KOG0386 Chromatin remodeling c 90.5 0.34 7.4E-06 45.2 4.0 117 3-128 448-569 (1157)
183 PRK13767 ATP-dependent helicas 90.5 1.7 3.7E-05 40.7 8.7 75 1-82 286-364 (876)
184 KOG1002 Nucleotide excision re 90.5 1.5 3.1E-05 38.4 7.5 116 2-126 234-364 (791)
185 COG1197 Mfd Transcription-repa 90.4 2.9 6.3E-05 39.9 9.9 104 1-118 805-911 (1139)
186 PF13401 AAA_22: AAA domain; P 90.3 0.33 7.1E-06 33.7 3.1 35 78-114 89-123 (131)
187 KOG0331 ATP-dependent RNA heli 90.2 1.4 3E-05 38.7 7.3 85 2-106 344-431 (519)
188 KOG0390 DNA repair protein, SN 90.2 2.4 5.1E-05 39.0 9.0 117 2-126 301-424 (776)
189 PHA02544 44 clamp loader, smal 89.9 6.5 0.00014 31.8 10.9 43 75-117 99-141 (316)
190 TIGR01389 recQ ATP-dependent D 89.9 2.3 5.1E-05 37.8 8.8 69 2-82 227-298 (591)
191 TIGR01587 cas3_core CRISPR-ass 89.7 1.4 3.1E-05 36.3 6.9 72 1-83 224-302 (358)
192 KOG0333 U5 snRNP-like RNA heli 89.5 2.1 4.6E-05 37.6 7.8 84 2-105 520-606 (673)
193 PRK12422 chromosomal replicati 89.5 6.7 0.00014 33.9 11.0 120 5-124 115-252 (445)
194 PRK12900 secA preprotein trans 88.9 0.84 1.8E-05 42.9 5.3 84 2-89 182-271 (1025)
195 COG1200 RecG RecG-like helicas 88.9 1.3 2.9E-05 39.8 6.3 81 1-88 475-563 (677)
196 KOG0989 Replication factor C, 88.8 1.5 3.4E-05 35.9 6.2 55 74-129 127-184 (346)
197 PF06733 DEAD_2: DEAD_2; Inte 88.3 0.42 9E-06 35.5 2.6 41 50-91 118-160 (174)
198 KOG0964 Structural maintenance 88.2 1.2 2.6E-05 41.6 5.7 52 77-130 1120-1171(1200)
199 COG0553 HepA Superfamily II DN 87.8 4 8.6E-05 37.6 9.1 114 2-122 393-516 (866)
200 KOG1000 Chromatin remodeling p 87.8 4 8.6E-05 35.8 8.2 104 3-117 245-348 (689)
201 KOG0344 ATP-dependent RNA heli 87.6 4 8.7E-05 36.1 8.3 74 2-86 390-466 (593)
202 smart00489 DEXDc3 DEAD-like he 87.5 0.75 1.6E-05 37.3 3.7 40 50-90 210-250 (289)
203 smart00488 DEXDc2 DEAD-like he 87.5 0.75 1.6E-05 37.3 3.7 40 50-90 210-250 (289)
204 PRK12901 secA preprotein trans 87.3 0.96 2.1E-05 42.7 4.6 85 2-89 213-303 (1112)
205 PRK08074 bifunctional ATP-depe 87.0 1 2.2E-05 42.4 4.8 40 50-90 430-469 (928)
206 PRK09694 helicase Cas3; Provis 85.8 4.7 0.0001 37.9 8.3 75 1-85 562-647 (878)
207 PRK11747 dinG ATP-dependent DN 85.7 1.3 2.8E-05 40.4 4.6 41 50-90 218-260 (697)
208 KOG0923 mRNA splicing factor A 85.6 3.6 7.9E-05 37.3 7.1 79 53-137 357-437 (902)
209 TIGR03817 DECH_helic helicase/ 85.4 4.3 9.4E-05 37.4 7.9 77 1-84 273-355 (742)
210 PF05621 TniB: Bacterial TniB 85.4 1.2 2.7E-05 36.3 3.9 42 74-115 143-186 (302)
211 TIGR03420 DnaA_homol_Hda DnaA 85.3 11 0.00025 28.6 9.2 103 14-118 24-133 (226)
212 COG4889 Predicted helicase [Ge 85.3 4.5 9.7E-05 38.1 7.6 86 2-90 209-318 (1518)
213 PRK14701 reverse gyrase; Provi 85.1 2.1 4.4E-05 42.8 5.9 69 1-82 332-407 (1638)
214 PRK05642 DNA replication initi 85.1 2.2 4.8E-05 33.3 5.2 89 30-119 46-141 (234)
215 COG0556 UvrB Helicase subunit 84.9 11 0.00024 33.4 9.5 110 2-126 449-566 (663)
216 PRK11131 ATP-dependent RNA hel 84.0 5.2 0.00011 39.1 7.9 71 2-81 289-360 (1294)
217 TIGR00708 cobA cob(I)alamin ad 83.2 3.3 7.2E-05 31.0 5.1 54 75-128 96-151 (173)
218 KOG0991 Replication factor C, 83.1 1.9 4E-05 34.3 3.8 44 74-118 111-154 (333)
219 PF13086 AAA_11: AAA domain; P 83.1 2.7 5.8E-05 31.8 4.8 36 50-90 169-206 (236)
220 KOG0933 Structural maintenance 82.9 3.1 6.7E-05 39.1 5.7 80 28-116 1065-1144(1174)
221 PRK08903 DnaA regulatory inact 82.8 19 0.00042 27.5 9.8 86 28-119 41-133 (227)
222 cd00561 CobA_CobO_BtuR ATP:cor 82.7 3.3 7.1E-05 30.6 4.9 55 74-128 93-149 (159)
223 TIGR01967 DEAH_box_HrpA ATP-de 82.6 6.1 0.00013 38.6 7.8 71 2-81 282-353 (1283)
224 PRK01172 ski2-like helicase; P 82.5 10 0.00022 34.4 8.9 77 1-85 238-337 (674)
225 PRK06893 DNA replication initi 82.4 3.2 7E-05 32.2 5.1 70 50-120 66-137 (229)
226 PRK08084 DNA replication initi 82.3 12 0.00026 29.2 8.3 100 28-128 44-156 (235)
227 PLN03137 ATP-dependent DNA hel 82.1 6.9 0.00015 37.7 7.8 68 2-81 683-753 (1195)
228 KOG0332 ATP-dependent RNA heli 81.9 10 0.00022 32.2 7.9 116 1-130 332-457 (477)
229 KOG0926 DEAH-box RNA helicase 81.8 4.6 9.9E-05 37.5 6.2 65 50-118 348-425 (1172)
230 KOG2170 ATPase of the AAA+ sup 81.1 2.4 5.2E-05 34.7 3.9 57 74-131 176-239 (344)
231 PF13173 AAA_14: AAA domain 80.9 3.8 8.2E-05 28.6 4.6 41 76-119 61-101 (128)
232 KOG0952 DNA/RNA helicase MER3/ 80.3 0.9 2E-05 42.8 1.4 120 2-128 976-1103(1230)
233 COG1196 Smc Chromosome segrega 79.7 2.3 5.1E-05 41.1 4.1 68 49-116 1047-1128(1163)
234 PRK05986 cob(I)alamin adenolsy 79.5 5.1 0.00011 30.5 5.1 54 75-128 114-169 (191)
235 KOG1556 26S proteasome regulat 79.5 6.9 0.00015 31.0 5.8 54 87-140 69-128 (309)
236 PRK06620 hypothetical protein; 79.0 27 0.00059 26.9 9.3 125 4-140 19-147 (214)
237 PRK06835 DNA replication prote 79.0 36 0.00077 28.2 11.4 130 8-138 161-315 (329)
238 PRK07414 cob(I)yrinic acid a,c 78.8 5.4 0.00012 30.0 5.0 53 75-127 114-168 (178)
239 PRK04914 ATP-dependent helicas 78.7 15 0.00032 35.0 8.8 73 2-85 496-573 (956)
240 PHA02558 uvsW UvsW helicase; P 78.4 12 0.00026 32.8 7.7 71 2-83 347-420 (501)
241 PF02572 CobA_CobO_BtuR: ATP:c 78.3 6.5 0.00014 29.4 5.3 55 74-128 94-150 (172)
242 PF13177 DNA_pol3_delta2: DNA 78.1 4 8.6E-05 30.0 4.1 67 51-118 67-143 (162)
243 PRK13766 Hef nuclease; Provisi 77.9 13 0.00028 34.3 8.1 73 2-86 368-451 (773)
244 KOG0354 DEAD-box like helicase 77.4 13 0.00029 34.1 7.7 76 1-85 415-501 (746)
245 PLN03025 replication factor C 77.3 3.9 8.5E-05 33.4 4.2 40 75-115 98-137 (319)
246 KOG0328 Predicted ATP-dependen 77.0 14 0.00031 30.2 7.1 69 1-81 268-339 (400)
247 PRK04195 replication factor C 76.9 42 0.00092 29.2 10.7 80 10-90 21-112 (482)
248 COG1203 CRISPR-associated heli 76.6 8.1 0.00018 35.6 6.4 53 2-59 443-502 (733)
249 PF15586 Imm47: Immunity prote 76.5 7.4 0.00016 27.1 4.8 51 50-105 43-93 (116)
250 KOG0335 ATP-dependent RNA heli 76.4 9.4 0.0002 33.2 6.3 72 2-85 340-414 (482)
251 PF05127 Helicase_RecD: Helica 75.8 2.7 5.9E-05 31.6 2.7 96 2-118 29-124 (177)
252 PRK09751 putative ATP-dependen 75.5 18 0.00039 36.1 8.6 75 1-82 246-351 (1490)
253 PRK06526 transposase; Provisio 75.5 11 0.00023 30.0 6.1 92 49-140 124-234 (254)
254 COG1111 MPH1 ERCC4-like helica 75.4 18 0.0004 31.7 7.8 73 2-85 369-452 (542)
255 COG3587 Restriction endonuclea 75.3 11 0.00024 35.1 6.7 114 3-122 108-247 (985)
256 KOG0990 Replication factor C, 75.2 4.7 0.0001 33.3 4.0 39 76-115 131-169 (360)
257 TIGR00362 DnaA chromosomal rep 75.0 23 0.00051 29.9 8.5 115 6-122 115-247 (405)
258 TIGR02621 cas3_GSU0051 CRISPR- 74.8 18 0.0004 33.8 8.1 70 1-85 274-362 (844)
259 PRK00149 dnaA chromosomal repl 74.8 24 0.00051 30.4 8.5 94 29-122 148-259 (450)
260 PRK14087 dnaA chromosomal repl 74.3 26 0.00057 30.3 8.6 71 51-121 171-253 (450)
261 PF00308 Bac_DnaA: Bacterial d 73.9 14 0.00031 28.4 6.4 133 5-140 12-166 (219)
262 PF13604 AAA_30: AAA domain; P 73.8 36 0.00078 25.7 9.7 98 14-117 5-131 (196)
263 COG2109 BtuR ATP:corrinoid ade 73.4 13 0.00027 28.5 5.6 53 76-128 122-176 (198)
264 PRK08727 hypothetical protein; 73.1 6.4 0.00014 30.7 4.3 109 30-140 42-162 (233)
265 PF02562 PhoH: PhoH-like prote 73.1 5.9 0.00013 30.5 4.0 35 78-116 121-155 (205)
266 PF03354 Terminase_1: Phage Te 73.0 6.6 0.00014 34.1 4.7 101 2-114 57-160 (477)
267 PRK07764 DNA polymerase III su 72.2 6.5 0.00014 36.7 4.7 39 75-114 119-157 (824)
268 COG0556 UvrB Helicase subunit 72.2 7.1 0.00015 34.6 4.6 23 2-24 60-82 (663)
269 PF13514 AAA_27: AAA domain 71.5 7.7 0.00017 37.4 5.2 56 79-136 1054-1109(1111)
270 COG1110 Reverse gyrase [DNA re 70.8 11 0.00024 35.9 5.7 72 2-83 338-413 (1187)
271 COG1199 DinG Rad3-related DNA 70.4 3.9 8.6E-05 36.8 2.9 40 50-90 193-234 (654)
272 KOG0018 Structural maintenance 70.0 5.5 0.00012 37.7 3.7 39 75-115 1072-1110(1141)
273 TIGR00631 uvrb excinuclease AB 69.9 25 0.00054 32.0 7.8 23 2-24 57-79 (655)
274 PRK12323 DNA polymerase III su 69.7 5.8 0.00013 36.1 3.7 40 75-115 123-162 (700)
275 PRK10875 recD exonuclease V su 69.4 29 0.00064 31.3 8.0 39 74-116 263-301 (615)
276 PRK02362 ski2-like helicase; P 69.4 27 0.00058 32.2 8.0 74 1-81 245-352 (737)
277 COG0653 SecA Preprotein transl 69.3 10 0.00022 35.3 5.1 83 3-89 125-213 (822)
278 PF00004 AAA: ATPase family as 68.9 10 0.00023 25.7 4.3 16 77-92 59-74 (132)
279 KOG1015 Transcription regulato 68.9 62 0.0013 31.2 9.9 114 2-120 731-863 (1567)
280 PRK07003 DNA polymerase III su 68.8 6.5 0.00014 36.4 3.8 39 75-114 118-156 (830)
281 PRK10536 hypothetical protein; 68.6 7.4 0.00016 31.2 3.7 34 78-115 178-211 (262)
282 PRK00254 ski2-like helicase; P 68.3 30 0.00064 31.8 8.0 76 1-83 240-346 (720)
283 COG4555 NatA ABC-type Na+ tran 67.5 9.3 0.0002 29.8 3.9 55 74-128 149-203 (245)
284 TIGR00604 rad3 DNA repair heli 66.7 3.9 8.4E-05 37.4 2.1 40 50-90 194-234 (705)
285 PRK00440 rfc replication facto 66.5 21 0.00045 28.7 6.1 41 75-116 101-141 (319)
286 PF01182 Glucosamine_iso: Gluc 66.1 15 0.00033 27.9 4.9 60 9-86 3-62 (199)
287 PRK14958 DNA polymerase III su 65.8 7.1 0.00015 34.3 3.4 39 75-114 118-156 (509)
288 TIGR00678 holB DNA polymerase 65.3 10 0.00022 28.2 3.8 40 74-114 94-133 (188)
289 PF12340 DUF3638: Protein of u 64.6 38 0.00083 26.6 6.9 88 2-91 73-187 (229)
290 PRK10869 recombination and rep 64.4 11 0.00024 33.5 4.4 39 76-114 452-490 (553)
291 PF13304 AAA_21: AAA domain; P 64.3 7.4 0.00016 29.3 2.9 38 78-115 259-297 (303)
292 KOG0298 DEAD box-containing he 63.5 36 0.00077 33.4 7.5 114 2-124 423-557 (1394)
293 PF00271 Helicase_C: Helicase 63.1 21 0.00045 22.1 4.5 51 28-85 7-60 (78)
294 cd00009 AAA The AAA+ (ATPases 63.0 14 0.0003 25.1 4.0 30 74-104 82-111 (151)
295 PRK08181 transposase; Validate 62.3 40 0.00086 27.1 6.9 91 49-139 132-241 (269)
296 PF02608 Bmp: Basic membrane p 62.0 41 0.00089 27.2 7.1 73 13-86 19-95 (306)
297 PRK12898 secA preprotein trans 61.9 36 0.00078 31.1 7.1 62 2-75 476-538 (656)
298 COG0497 RecN ATPase involved i 61.6 8.2 0.00018 34.3 3.0 51 76-128 453-503 (557)
299 COG4408 Uncharacterized protei 61.6 97 0.0021 26.0 8.9 132 3-139 7-147 (431)
300 KOG0996 Structural maintenance 61.6 8.7 0.00019 36.9 3.3 52 77-130 1218-1269(1293)
301 PRK14088 dnaA chromosomal repl 61.3 1.1E+02 0.0023 26.4 11.4 118 6-126 110-246 (440)
302 cd01120 RecA-like_NTPases RecA 61.0 17 0.00037 25.5 4.2 45 74-118 83-137 (165)
303 PRK07413 hypothetical protein; 61.0 19 0.00041 30.5 4.9 54 75-128 124-179 (382)
304 KOG0924 mRNA splicing factor A 60.9 1.2E+02 0.0025 28.3 9.8 64 53-119 447-512 (1042)
305 KOG0341 DEAD-box protein abstr 60.8 30 0.00065 29.6 6.0 85 2-106 424-511 (610)
306 PRK07413 hypothetical protein; 60.8 15 0.00032 31.2 4.2 54 75-128 304-360 (382)
307 COG0470 HolB ATPase involved i 60.8 26 0.00056 28.1 5.7 63 52-115 74-147 (325)
308 KOG0340 ATP-dependent RNA heli 60.7 61 0.0013 27.5 7.6 68 2-81 257-327 (442)
309 PRK13770 histidinol dehydrogen 60.7 22 0.00048 30.4 5.3 27 1-27 254-280 (416)
310 cd06353 PBP1_BmpA_Med_like Per 60.4 52 0.0011 25.9 7.2 67 16-84 20-89 (258)
311 PRK12402 replication factor C 60.3 11 0.00023 30.7 3.3 40 75-115 124-163 (337)
312 PF02302 PTS_IIB: PTS system, 60.0 38 0.00081 21.7 5.4 56 2-62 2-58 (90)
313 cd00133 PTS_IIB PTS_IIB: subun 59.8 38 0.00083 20.8 6.0 53 2-60 2-55 (84)
314 PF10100 DUF2338: Uncharacteri 59.6 1E+02 0.0022 26.5 8.9 132 3-139 4-145 (429)
315 COG0593 DnaA ATPase involved i 59.5 92 0.002 26.7 8.8 134 3-140 89-244 (408)
316 PRK09112 DNA polymerase III su 59.3 13 0.00028 31.1 3.7 40 75-115 140-179 (351)
317 TIGR00634 recN DNA repair prot 59.1 10 0.00022 33.7 3.2 41 76-116 462-502 (563)
318 PRK14961 DNA polymerase III su 59.1 16 0.00035 30.5 4.3 39 75-114 118-156 (363)
319 PRK05298 excinuclease ABC subu 58.9 51 0.0011 30.0 7.6 23 2-24 60-82 (652)
320 KOG0330 ATP-dependent RNA heli 58.7 44 0.00095 28.6 6.6 84 2-105 303-389 (476)
321 PF13307 Helicase_C_2: Helicas 58.5 6.1 0.00013 29.1 1.5 76 2-85 12-90 (167)
322 PF05872 DUF853: Bacterial pro 58.1 30 0.00064 30.2 5.6 44 73-116 251-299 (502)
323 PRK14873 primosome assembly pr 57.4 60 0.0013 29.7 7.8 64 15-91 440-503 (665)
324 PRK00877 hisD bifunctional his 56.9 30 0.00066 29.7 5.5 27 1-27 264-290 (425)
325 TIGR02169 SMC_prok_A chromosom 56.9 12 0.00026 35.7 3.6 43 75-117 1095-1137(1164)
326 COG0466 Lon ATP-dependent Lon 56.8 11 0.00023 34.6 2.9 47 54-104 398-445 (782)
327 cd03239 ABC_SMC_head The struc 56.7 12 0.00026 27.8 2.9 41 75-115 115-156 (178)
328 TIGR00069 hisD histidinol dehy 56.7 33 0.00072 29.2 5.6 27 1-27 233-259 (393)
329 PRK14086 dnaA chromosomal repl 56.7 58 0.0013 29.5 7.5 71 51-121 344-424 (617)
330 COG1875 NYN ribonuclease and A 56.6 14 0.00031 31.2 3.5 33 78-114 353-385 (436)
331 PF12846 AAA_10: AAA-like doma 56.3 19 0.00042 28.3 4.2 32 75-106 219-251 (304)
332 TIGR01198 pgl 6-phosphoglucono 56.1 42 0.00091 26.2 5.9 54 58-114 39-98 (233)
333 COG0141 HisD Histidinol dehydr 55.6 37 0.00079 29.2 5.7 72 1-72 260-342 (425)
334 TIGR01447 recD exodeoxyribonuc 55.3 18 0.00039 32.4 4.1 38 75-116 258-295 (586)
335 PRK08451 DNA polymerase III su 54.9 14 0.0003 32.8 3.3 40 74-114 115-154 (535)
336 KOG0327 Translation initiation 54.8 54 0.0012 27.8 6.5 69 1-81 265-336 (397)
337 PRK09200 preprotein translocas 54.4 55 0.0012 30.6 7.1 54 1-59 430-484 (790)
338 TIGR00824 EIIA-man PTS system, 54.3 54 0.0012 22.5 5.7 75 53-129 3-80 (116)
339 KOG0338 ATP-dependent RNA heli 54.1 52 0.0011 29.3 6.4 71 2-84 429-502 (691)
340 PF01637 Arch_ATPase: Archaeal 54.0 25 0.00054 26.3 4.3 40 78-117 120-165 (234)
341 cd01400 6PGL 6PGL: 6-Phosphogl 53.7 44 0.00096 25.7 5.7 84 9-114 5-94 (219)
342 cd06572 Histidinol_dh Histidin 53.5 30 0.00064 29.5 4.9 27 1-27 237-263 (390)
343 KOG0740 AAA+-type ATPase [Post 53.5 30 0.00064 29.8 4.9 64 76-139 245-321 (428)
344 PRK14960 DNA polymerase III su 53.3 25 0.00053 32.2 4.6 39 75-114 117-155 (702)
345 KOG0349 Putative DEAD-box RNA 53.0 65 0.0014 28.1 6.8 72 1-81 507-581 (725)
346 PF05876 Terminase_GpA: Phage 53.0 38 0.00081 30.2 5.7 110 2-120 65-182 (557)
347 COG1435 Tdk Thymidine kinase [ 52.5 64 0.0014 24.8 6.1 51 52-105 60-110 (201)
348 TIGR03714 secA2 accessory Sec 52.4 62 0.0013 30.1 7.1 54 1-59 426-480 (762)
349 PRK04132 replication factor C 52.2 31 0.00067 32.4 5.2 37 76-113 630-666 (846)
350 PRK07994 DNA polymerase III su 51.6 16 0.00035 33.2 3.2 43 75-119 118-160 (647)
351 PRK14964 DNA polymerase III su 51.5 25 0.00054 30.9 4.3 60 74-138 114-173 (491)
352 PRK00411 cdc6 cell division co 51.4 30 0.00065 28.8 4.7 26 78-103 140-165 (394)
353 cd03278 ABC_SMC_barmotin Barmo 51.4 23 0.00049 26.8 3.6 41 75-115 134-174 (197)
354 PRK14969 DNA polymerase III su 50.6 17 0.00036 32.2 3.2 40 74-114 117-156 (527)
355 PRK04841 transcriptional regul 50.6 19 0.00041 33.5 3.7 43 77-119 122-164 (903)
356 cd03273 ABC_SMC2_euk Eukaryoti 50.5 17 0.00037 28.4 2.9 42 75-116 187-228 (251)
357 PRK14957 DNA polymerase III su 50.4 31 0.00068 30.7 4.8 40 74-114 117-156 (546)
358 PF03129 HGTP_anticodon: Antic 49.8 67 0.0015 20.6 6.9 60 1-62 1-64 (94)
359 PRK09111 DNA polymerase III su 48.9 36 0.00079 30.6 5.0 40 74-114 130-169 (598)
360 COG1201 Lhr Lhr-like helicases 48.5 60 0.0013 30.5 6.4 54 2-59 256-312 (814)
361 PF05729 NACHT: NACHT domain 48.2 93 0.002 21.7 6.4 58 79-139 84-149 (166)
362 TIGR02673 FtsE cell division A 48.0 14 0.0003 28.0 2.0 52 74-125 153-204 (214)
363 TIGR01448 recD_rel helicase, p 48.0 25 0.00055 32.3 4.0 38 75-116 415-452 (720)
364 PRK08691 DNA polymerase III su 47.9 31 0.00067 31.7 4.4 40 74-114 117-156 (709)
365 TIGR01407 dinG_rel DnaQ family 47.7 85 0.0018 29.5 7.4 74 2-83 677-752 (850)
366 cd00860 ThrRS_anticodon ThrRS 47.3 71 0.0015 20.1 7.1 50 2-53 4-53 (91)
367 PRK14956 DNA polymerase III su 47.2 21 0.00045 31.3 3.1 27 76-103 121-147 (484)
368 PF05707 Zot: Zonular occluden 46.8 21 0.00045 26.9 2.8 54 76-129 79-137 (193)
369 PRK14949 DNA polymerase III su 46.7 31 0.00067 32.7 4.3 45 75-121 118-162 (944)
370 CHL00181 cbbX CbbX; Provisiona 46.6 37 0.0008 27.4 4.4 48 78-125 124-177 (287)
371 TIGR00348 hsdR type I site-spe 46.5 88 0.0019 28.6 7.1 77 2-85 517-618 (667)
372 cd05566 PTS_IIB_galactitol PTS 46.5 63 0.0014 20.7 4.8 54 2-60 3-57 (89)
373 PRK04296 thymidine kinase; Pro 46.2 21 0.00046 26.8 2.7 53 56-116 62-114 (190)
374 COG0363 NagB 6-phosphogluconol 45.9 84 0.0018 24.7 6.2 59 9-86 10-73 (238)
375 cd03274 ABC_SMC4_euk Eukaryoti 45.8 27 0.00058 26.8 3.3 39 76-114 149-187 (212)
376 cd00267 ABC_ATPase ABC (ATP-bi 45.8 14 0.0003 26.6 1.6 49 74-122 96-144 (157)
377 PRK11034 clpA ATP-dependent Cl 45.4 32 0.0007 31.9 4.2 44 78-121 280-327 (758)
378 PRK08769 DNA polymerase III su 45.2 32 0.00068 28.4 3.8 41 74-115 111-151 (319)
379 PRK14952 DNA polymerase III su 45.1 34 0.00073 30.8 4.2 44 74-119 116-159 (584)
380 TIGR02397 dnaX_nterm DNA polym 45.0 1.7E+02 0.0037 23.8 11.3 39 74-113 115-153 (355)
381 PRK06305 DNA polymerase III su 44.9 31 0.00068 29.8 3.9 39 75-114 120-158 (451)
382 PRK07471 DNA polymerase III su 44.7 34 0.00073 28.8 4.0 43 74-117 139-181 (365)
383 cd03263 ABC_subfamily_A The AB 44.4 19 0.00042 27.3 2.3 51 74-125 149-199 (220)
384 TIGR03687 pupylate_cterm ubiqu 44.3 12 0.00026 19.8 0.8 22 81-102 8-29 (33)
385 COG4626 Phage terminase-like p 44.0 91 0.002 27.8 6.5 96 2-114 121-222 (546)
386 TIGR02168 SMC_prok_B chromosom 43.6 29 0.00063 33.1 3.8 42 75-116 1110-1151(1179)
387 PRK08058 DNA polymerase III su 43.3 30 0.00065 28.5 3.4 41 74-115 108-148 (329)
388 COG2842 Uncharacterized ATPase 42.9 40 0.00086 27.6 3.9 30 74-104 163-192 (297)
389 PRK13342 recombination factor 42.9 64 0.0014 27.4 5.5 38 76-118 92-129 (413)
390 COG1131 CcmA ABC-type multidru 42.8 16 0.00034 29.7 1.7 54 74-127 152-206 (293)
391 PRK14959 DNA polymerase III su 42.6 42 0.00092 30.4 4.4 45 74-120 117-161 (624)
392 cd03269 ABC_putative_ATPase Th 42.6 21 0.00046 26.9 2.3 53 74-126 144-196 (210)
393 PRK07940 DNA polymerase III su 42.4 42 0.00091 28.6 4.2 42 74-116 115-156 (394)
394 PRK14951 DNA polymerase III su 42.2 41 0.00088 30.5 4.3 42 75-118 123-164 (618)
395 TIGR02881 spore_V_K stage V sp 42.1 56 0.0012 25.7 4.7 28 78-105 107-138 (261)
396 cd03225 ABC_cobalt_CbiO_domain 41.7 19 0.0004 27.2 1.9 52 74-125 150-201 (211)
397 KOG0343 RNA Helicase [RNA proc 40.9 2.1E+02 0.0046 26.0 8.2 70 2-81 316-388 (758)
398 cd03240 ABC_Rad50 The catalyti 40.9 35 0.00076 25.9 3.3 43 74-116 137-182 (204)
399 KOG4284 DEAD box protein [Tran 40.2 35 0.00076 31.3 3.5 69 1-81 274-345 (980)
400 PRK11264 putative amino-acid A 40.2 24 0.00052 27.4 2.3 53 74-126 160-212 (250)
401 PF05970 PIF1: PIF1-like helic 40.0 24 0.00051 29.5 2.4 32 74-106 100-131 (364)
402 COG0514 RecQ Superfamily II DN 39.8 1.1E+02 0.0024 27.6 6.5 53 2-59 233-288 (590)
403 cd05563 PTS_IIB_ascorbate PTS_ 39.7 98 0.0021 19.6 5.0 52 2-60 2-54 (86)
404 PRK14965 DNA polymerase III su 39.6 36 0.00079 30.4 3.6 40 74-114 117-156 (576)
405 COG2812 DnaX DNA polymerase II 39.4 26 0.00056 31.0 2.6 29 74-102 117-145 (515)
406 cd03229 ABC_Class3 This class 39.4 18 0.0004 26.6 1.5 49 74-122 116-165 (178)
407 PRK14974 cell division protein 39.1 60 0.0013 27.0 4.6 54 76-129 222-276 (336)
408 cd03226 ABC_cobalt_CbiO_domain 39.0 19 0.00041 27.1 1.5 51 74-124 142-192 (205)
409 PRK12447 histidinol dehydrogen 38.9 94 0.002 26.8 5.7 27 1-27 259-285 (426)
410 PRK14955 DNA polymerase III su 38.9 61 0.0013 27.4 4.7 41 73-114 124-164 (397)
411 KOG2543 Origin recognition com 38.7 70 0.0015 27.4 4.8 64 76-140 115-180 (438)
412 cd03215 ABC_Carb_Monos_II This 38.7 23 0.0005 26.1 1.9 52 74-125 120-171 (182)
413 KOG0741 AAA+-type ATPase [Post 38.6 1.2E+02 0.0026 27.3 6.4 72 17-91 246-339 (744)
414 cd03275 ABC_SMC1_euk Eukaryoti 38.4 46 0.00099 26.0 3.7 40 76-115 177-217 (247)
415 KOG2228 Origin recognition com 38.2 1.5E+02 0.0034 25.0 6.7 42 61-103 123-164 (408)
416 TIGR03871 ABC_peri_MoxJ_2 quin 38.1 66 0.0014 24.3 4.5 37 28-64 34-70 (232)
417 COG1744 Med Uncharacterized AB 38.1 93 0.002 25.9 5.6 71 13-85 53-130 (345)
418 TIGR03522 GldA_ABC_ATP gliding 37.9 31 0.00066 27.9 2.7 53 74-127 149-201 (301)
419 COG1484 DnaC DNA replication p 37.8 2E+02 0.0044 22.7 8.5 77 15-91 91-182 (254)
420 cd03241 ABC_RecN RecN ATPase i 37.6 42 0.0009 26.8 3.4 41 76-116 192-232 (276)
421 PRK06645 DNA polymerase III su 37.6 63 0.0014 28.5 4.7 61 74-139 126-186 (507)
422 CHL00073 chlN photochlorophyll 37.0 1.3E+02 0.0028 26.3 6.4 76 4-89 343-420 (457)
423 COG2909 MalT ATP-dependent tra 36.8 51 0.0011 31.0 4.0 45 75-119 128-172 (894)
424 cd03216 ABC_Carb_Monos_I This 36.8 25 0.00053 25.6 1.8 51 74-124 98-148 (163)
425 PF13558 SbcCD_C: Putative exo 36.7 67 0.0015 20.9 3.7 30 73-102 60-89 (90)
426 PRK13769 histidinol dehydrogen 36.6 1.1E+02 0.0024 25.8 5.8 72 1-74 227-299 (368)
427 PRK07276 DNA polymerase III su 36.5 1.2E+02 0.0026 24.7 5.9 42 51-92 71-120 (290)
428 PLN02926 histidinol dehydrogen 36.3 99 0.0021 26.7 5.5 27 1-27 268-294 (431)
429 PF14792 DNA_pol_B_palm: DNA p 36.3 27 0.00058 24.0 1.8 48 9-60 4-51 (112)
430 PRK13341 recombination factor 36.2 71 0.0015 29.6 4.9 42 76-122 109-150 (725)
431 PRK07399 DNA polymerase III su 36.2 80 0.0017 25.9 4.8 40 74-115 122-161 (314)
432 PRK07952 DNA replication prote 36.2 2.1E+02 0.0047 22.5 9.3 106 15-120 84-208 (244)
433 PRK05707 DNA polymerase III su 36.1 48 0.001 27.4 3.5 40 74-114 104-143 (328)
434 cd03262 ABC_HisP_GlnQ_permease 36.1 25 0.00053 26.5 1.8 52 74-125 151-202 (213)
435 PRK14970 DNA polymerase III su 36.1 55 0.0012 27.1 4.0 39 74-113 106-144 (367)
436 PRK07133 DNA polymerase III su 36.0 59 0.0013 30.1 4.4 39 74-113 116-154 (725)
437 cd03266 ABC_NatA_sodium_export 35.8 26 0.00056 26.6 1.8 52 74-125 152-203 (218)
438 PRK14953 DNA polymerase III su 35.8 59 0.0013 28.5 4.2 38 74-112 117-154 (486)
439 PRK06921 hypothetical protein; 35.6 2.3E+02 0.0049 22.6 7.8 91 29-120 117-227 (266)
440 PRK13889 conjugal transfer rel 35.6 3.7E+02 0.008 26.1 9.5 39 74-116 431-470 (988)
441 TIGR00960 3a0501s02 Type II (G 35.6 28 0.0006 26.4 2.0 51 74-124 154-204 (216)
442 PHA03368 DNA packaging termina 35.5 37 0.00081 31.1 2.9 102 2-118 287-391 (738)
443 PTZ00112 origin recognition co 35.4 1.2E+02 0.0025 29.4 6.1 40 76-116 869-909 (1164)
444 PRK14954 DNA polymerase III su 35.3 68 0.0015 29.1 4.6 62 73-139 124-185 (620)
445 cd03260 ABC_PstB_phosphate_tra 35.1 32 0.00069 26.3 2.3 51 74-125 157-207 (227)
446 PRK09493 glnQ glutamine ABC tr 35.0 29 0.00062 26.8 2.0 53 74-126 152-204 (240)
447 COG4152 ABC-type uncharacteriz 34.9 71 0.0015 25.8 4.1 56 74-129 146-201 (300)
448 cd03409 Chelatase_Class_II Cla 34.8 1.3E+02 0.0028 19.5 6.7 50 10-60 17-67 (101)
449 TIGR03771 anch_rpt_ABC anchore 34.8 27 0.00058 26.8 1.8 53 74-126 129-181 (223)
450 PRK13543 cytochrome c biogenes 34.7 31 0.00066 26.2 2.1 52 74-125 153-204 (214)
451 PRK14962 DNA polymerase III su 34.7 69 0.0015 28.0 4.4 31 74-105 115-145 (472)
452 PF14459 Prok-E2_C: Prokaryoti 34.6 1.3E+02 0.0028 20.8 4.8 30 3-33 30-59 (131)
453 COG1643 HrpA HrpA-like helicas 34.5 1.4E+02 0.003 28.3 6.5 71 2-81 262-336 (845)
454 smart00490 HELICc helicase sup 34.2 1.1E+02 0.0023 18.3 6.4 51 28-85 11-64 (82)
455 cd03213 ABCG_EPDR ABCG transpo 34.1 34 0.00073 25.6 2.2 52 74-125 127-179 (194)
456 TIGR03346 chaperone_ClpB ATP-d 34.1 60 0.0013 30.5 4.2 46 77-122 267-315 (852)
457 cd03218 ABC_YhbG The ABC trans 33.8 30 0.00065 26.5 1.9 53 74-126 149-201 (232)
458 cd03276 ABC_SMC6_euk Eukaryoti 33.7 35 0.00077 25.8 2.3 49 74-122 129-180 (198)
459 PRK11448 hsdR type I restricti 33.6 2.6E+02 0.0056 27.5 8.3 57 2-58 701-763 (1123)
460 TIGR00972 3a0107s01c2 phosphat 33.6 33 0.00072 26.6 2.2 53 74-127 160-212 (247)
461 cd00458 SugarP_isomerase Sugar 33.5 1.5E+02 0.0032 21.8 5.5 58 9-85 2-59 (169)
462 PRK14950 DNA polymerase III su 33.4 73 0.0016 28.6 4.5 39 74-113 118-156 (585)
463 PF00815 Histidinol_dh: Histid 33.2 55 0.0012 28.1 3.5 27 1-27 251-277 (412)
464 PRK13537 nodulation ABC transp 33.1 29 0.00063 28.2 1.8 54 74-127 154-207 (306)
465 PRK11124 artP arginine transpo 33.1 31 0.00067 26.7 1.9 53 74-126 157-209 (242)
466 COG4588 AcfC Accessory coloniz 33.1 2.2E+02 0.0048 22.3 6.3 92 17-112 37-130 (252)
467 cd03230 ABC_DR_subfamily_A Thi 33.0 27 0.00059 25.5 1.5 43 74-116 111-153 (173)
468 PRK13536 nodulation factor exp 32.8 27 0.00058 29.0 1.6 54 74-127 188-241 (340)
469 cd03219 ABC_Mj1267_LivG_branch 32.8 31 0.00067 26.5 1.9 53 74-126 159-211 (236)
470 TIGR00963 secA preprotein tran 32.3 1.5E+02 0.0032 27.6 6.3 53 2-59 408-461 (745)
471 TIGR03740 galliderm_ABC gallid 32.2 37 0.00081 25.8 2.2 53 74-126 140-192 (223)
472 cd03300 ABC_PotA_N PotA is an 32.2 25 0.00055 27.0 1.3 53 74-126 146-199 (232)
473 KOG0921 Dosage compensation co 32.1 53 0.0011 31.3 3.4 62 53-118 474-536 (1282)
474 TIGR01277 thiQ thiamine ABC tr 32.1 30 0.00065 26.2 1.7 49 74-122 144-193 (213)
475 TIGR02324 CP_lyasePhnL phospho 32.1 42 0.0009 25.6 2.5 53 74-126 165-217 (224)
476 PHA02533 17 large terminase pr 31.9 1.6E+02 0.0035 26.2 6.3 102 2-117 107-210 (534)
477 PRK05564 DNA polymerase III su 31.8 56 0.0012 26.5 3.3 40 74-114 91-130 (313)
478 PRK12904 preprotein translocas 31.8 1.4E+02 0.003 28.3 6.0 53 2-59 433-486 (830)
479 cd03298 ABC_ThiQ_thiamine_tran 31.5 34 0.00073 25.8 1.9 52 74-125 144-196 (211)
480 PRK14260 phosphate ABC transpo 31.5 49 0.0011 25.9 2.8 52 74-126 166-217 (259)
481 PRK10865 protein disaggregatio 31.4 60 0.0013 30.6 3.7 45 78-122 273-320 (857)
482 PRK06871 DNA polymerase III su 31.3 55 0.0012 27.1 3.2 40 74-114 105-144 (325)
483 TIGR01128 holA DNA polymerase 31.2 76 0.0016 25.2 3.9 64 74-138 44-109 (302)
484 smart00382 AAA ATPases associa 31.2 69 0.0015 21.1 3.3 21 77-97 79-99 (148)
485 PRK09087 hypothetical protein; 31.2 2.5E+02 0.0054 21.7 8.4 103 30-140 45-153 (226)
486 PRK05563 DNA polymerase III su 30.9 54 0.0012 29.3 3.2 43 74-118 117-159 (559)
487 PRK14963 DNA polymerase III su 30.7 68 0.0015 28.3 3.8 16 74-89 114-129 (504)
488 PRK11231 fecE iron-dicitrate t 30.7 43 0.00092 26.2 2.3 54 74-127 154-207 (255)
489 cd03235 ABC_Metallic_Cations A 30.7 36 0.00078 25.7 1.9 53 74-126 148-200 (213)
490 cd03259 ABC_Carb_Solutes_like 30.6 31 0.00068 26.0 1.5 52 74-125 146-198 (213)
491 PF08967 DUF1884: Domain of un 30.5 82 0.0018 20.6 3.2 34 51-86 27-60 (85)
492 PRK14253 phosphate ABC transpo 30.5 38 0.00083 26.3 2.0 52 74-126 161-212 (249)
493 TIGR01184 ntrCD nitrate transp 30.4 31 0.00068 26.5 1.5 53 74-126 130-183 (230)
494 cd03224 ABC_TM1139_LivF_branch 30.3 42 0.00092 25.4 2.2 53 74-126 148-200 (222)
495 COG1124 DppF ABC-type dipeptid 30.2 45 0.00097 26.6 2.3 64 75-139 158-225 (252)
496 PRK14971 DNA polymerase III su 30.2 71 0.0015 28.9 3.9 41 73-114 118-158 (614)
497 TIGR02928 orc1/cdc6 family rep 30.1 63 0.0014 26.5 3.4 14 77-90 130-143 (365)
498 KOG1133 Helicase of the DEAD s 30.1 60 0.0013 29.9 3.3 40 50-90 322-362 (821)
499 TIGR01615 A_thal_3542 uncharac 30.1 73 0.0016 22.8 3.2 24 44-67 70-93 (131)
500 KOG2004 Mitochondrial ATP-depe 30.0 84 0.0018 29.3 4.2 49 52-104 484-533 (906)
No 1
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-37 Score=253.23 Aligned_cols=170 Identities=58% Similarity=0.888 Sum_probs=159.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHh-cCCccCCCceEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNLVIL 80 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~-~~~~~~~~l~~l 80 (184)
||||+||||||.||++++..+..+++++.+.+++||.+.+++.....+++|+|+|||||||.+++.+ +..+++++|.++
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~L 161 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEIL 161 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceE
Confidence 8999999999999999999999999999999999999999999999899999999999999999987 456788899999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|+||||+++++||...++.|++.+|+++++-+||||.+.++..+++..++||+.|++..... ..+|+
T Consensus 162 VLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~-------------~~tPS 228 (567)
T KOG0345|consen 162 VLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSK-------------SATPS 228 (567)
T ss_pred EecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeeccccc-------------ccCch
Confidence 99999999999999999999999999999999999999999999999999999999988821 23999
Q ss_pred cceeEEEEecC-cchheeeeecccC
Q 029993 161 GLHLEVLRLNI-FWLQFTLHVVKQN 184 (184)
Q Consensus 161 ~l~~~~~~~~~-~~~~~~l~~~~~~ 184 (184)
.++.+|++|++ +|...+++++.+|
T Consensus 229 ~L~~~Y~v~~a~eK~~~lv~~L~~~ 253 (567)
T KOG0345|consen 229 SLALEYLVCEADEKLSQLVHLLNNN 253 (567)
T ss_pred hhcceeeEecHHHHHHHHHHHHhcc
Confidence 99999999998 7888888887654
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-36 Score=244.49 Aligned_cols=164 Identities=34% Similarity=0.564 Sum_probs=153.5
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+||||+||||||.||.++++.|++.+ +++++.+.||.++-.+...+ .+.|||||||||+|.+++.+++.++++.++++
T Consensus 131 ~~lVLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L-~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 131 FALVLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQL-SKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred eEEEecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHh-hcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 58999999999999999999999988 99999999999999998888 57899999999999999998899999999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|+||||++++++|.+.+..|++.+|..+|+++||||+|..+..+-..-+++|+.|.+... +.+-+
T Consensus 209 VlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~k---------------y~tv~ 273 (476)
T KOG0330|consen 209 VLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSK---------------YQTVD 273 (476)
T ss_pred hhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccch---------------hcchH
Confidence 999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred cceeEEEEecCcchh-eeeeec
Q 029993 161 GLHLEVLRLNIFWLQ-FTLHVV 181 (184)
Q Consensus 161 ~l~~~~~~~~~~~~~-~~l~~~ 181 (184)
+++|+|+.++..++. ++++++
T Consensus 274 ~lkQ~ylfv~~k~K~~yLV~ll 295 (476)
T KOG0330|consen 274 HLKQTYLFVPGKDKDTYLVYLL 295 (476)
T ss_pred HhhhheEeccccccchhHHHHH
Confidence 999999999985444 444433
No 3
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=248.47 Aligned_cols=167 Identities=39% Similarity=0.599 Sum_probs=153.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.||||.||||||.|+++++.+.+++. +++..++.||.+.+.+..++ .+++|+|||||||+.++.++..++.++++++
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi--~~mNILVCTPGRLLQHmde~~~f~t~~lQmL 219 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERI--SQMNILVCTPGRLLQHMDENPNFSTSNLQML 219 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhh--hcCCeEEechHHHHHHhhhcCCCCCCcceEE
Confidence 48999999999999999999999887 89999999999988888887 5799999999999999999888999999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|+||||+|+++||...+..|++++|+.+|+++||||-+..|..+++.-++||.+|.+-... ...+|.
T Consensus 220 vLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a-------------~~atP~ 286 (758)
T KOG0343|consen 220 VLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENA-------------VAATPS 286 (758)
T ss_pred EeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccc-------------cccChh
Confidence 9999999999999999999999999999999999999999999999999999999987442 278999
Q ss_pred cceeEEEEecC-cchheeeeeccc
Q 029993 161 GLHLEVLRLNI-FWLQFTLHVVKQ 183 (184)
Q Consensus 161 ~l~~~~~~~~~-~~~~~~l~~~~~ 183 (184)
+|+|+|+.++- +|...+..|++.
T Consensus 287 ~L~Q~y~~v~l~~Ki~~L~sFI~s 310 (758)
T KOG0343|consen 287 NLQQSYVIVPLEDKIDMLWSFIKS 310 (758)
T ss_pred hhhheEEEEehhhHHHHHHHHHHh
Confidence 99999999997 676666666654
No 4
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-35 Score=241.80 Aligned_cols=153 Identities=37% Similarity=0.576 Sum_probs=147.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+|||+||||||.|++++.++|+.+. ++.++++.||.+.+.|...| +.+|||+|+|||||.+++.++..++++++..+|
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~L-Rs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLv 332 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVL-RSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLV 332 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHH-hhCCCEEEecchhHHHHhccCCCccccceeEEE
Confidence 6999999999999999999999988 89999999999999998888 568999999999999999998999999999999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCCc
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLG 161 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+||||+|++.+|.+.++.|++.+|+++|+++||||++.+|+.+++.-+++|+.|.++.. ..++..
T Consensus 333 lDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~---------------~~~a~~ 397 (691)
T KOG0338|consen 333 LDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPN---------------KDTAPK 397 (691)
T ss_pred echHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCc---------------cccchh
Confidence 99999999999999999999999999999999999999999999999999999999999 789999
Q ss_pred ceeEEEEecC
Q 029993 162 LHLEVLRLNI 171 (184)
Q Consensus 162 l~~~~~~~~~ 171 (184)
|.|.|+.+.+
T Consensus 398 LtQEFiRIR~ 407 (691)
T KOG0338|consen 398 LTQEFIRIRP 407 (691)
T ss_pred hhHHHheecc
Confidence 9999998875
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-34 Score=246.89 Aligned_cols=156 Identities=37% Similarity=0.599 Sum_probs=145.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
|||++||||||.|+++.+.+++++.+++++..++||.+...+...+. .++||+|||||||++++.. +.+++++++++|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~-~~~~ivVaTPGRllD~i~~-~~l~l~~v~~lV 179 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK-RGVDIVVATPGRLLDLIKR-GKLDLSGVETLV 179 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh-cCCCEEEECccHHHHHHHc-CCcchhhcCEEE
Confidence 89999999999999999999998765799999999999999997774 4799999999999999999 799999999999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCCc
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLG 161 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+||||+|+++||.+++..|++.+|.++|+++||||+|+.+..+++.++++|..+.+.... ...++.+
T Consensus 180 lDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~-------------~~~~~~~ 246 (513)
T COG0513 180 LDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEK-------------LERTLKK 246 (513)
T ss_pred eccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEcccc-------------ccccccC
Confidence 999999999999999999999999999999999999999999999999999999998551 1348899
Q ss_pred ceeEEEEecCc
Q 029993 162 LHLEVLRLNIF 172 (184)
Q Consensus 162 l~~~~~~~~~~ 172 (184)
+.|+|+.++..
T Consensus 247 i~q~~~~v~~~ 257 (513)
T COG0513 247 IKQFYLEVESE 257 (513)
T ss_pred ceEEEEEeCCH
Confidence 99999999973
No 6
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-34 Score=224.91 Aligned_cols=158 Identities=34% Similarity=0.517 Sum_probs=150.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
||||++||||||.|+.+++..++.+. ++.+-.|.||.+.+++.+.+ ..|.|++.|||||+++|++. +.+..+.++++
T Consensus 97 Q~lilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkl-d~G~hvVsGtPGrv~dmikr-~~L~tr~vkml 173 (400)
T KOG0328|consen 97 QALILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKL-DYGQHVVSGTPGRVLDMIKR-RSLRTRAVKML 173 (400)
T ss_pred eEEEecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhh-cccceEeeCCCchHHHHHHh-ccccccceeEE
Confidence 79999999999999999999999888 99999999999999999998 58999999999999999999 99999999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|+||||.|++.+|.+++-.|.+.+|+.+|++++|||+|.++.++.++|+.||+.|.+... +.+..
T Consensus 174 VLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrd---------------eltlE 238 (400)
T KOG0328|consen 174 VLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRD---------------ELTLE 238 (400)
T ss_pred EeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecC---------------CCchh
Confidence 999999999999999999999999999999999999999999999999999999999998 88889
Q ss_pred cceeEEEEecC-cchhe
Q 029993 161 GLHLEVLRLNI-FWLQF 176 (184)
Q Consensus 161 ~l~~~~~~~~~-~~~~~ 176 (184)
+++|||+.++. +|+.-
T Consensus 239 gIKqf~v~ve~EewKfd 255 (400)
T KOG0328|consen 239 GIKQFFVAVEKEEWKFD 255 (400)
T ss_pred hhhhheeeechhhhhHh
Confidence 99999999997 65543
No 7
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-34 Score=241.73 Aligned_cols=137 Identities=39% Similarity=0.649 Sum_probs=130.3
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+|||+||||||.||...+.++++.. .+++++++||.....|.+.+ +.+.+|+|||||||.++++. +.+++++|.|+
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l-~~gvdiviaTPGRl~d~le~-g~~~l~~v~yl 243 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDL-ERGVDVVIATPGRLIDLLEE-GSLNLSRVTYL 243 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHH-hcCCcEEEeCChHHHHHHHc-CCccccceeEE
Confidence 48999999999999999999999877 78999999999999999998 57999999999999999999 99999999999
Q ss_pred EechhhHhhccchHHHHHHHHHhC-CCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l-~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (184)
|+||||+|++++|+++++.|++++ +..+|+++||||||.+|+.++..|+++|..+.+...
T Consensus 244 VLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~ 304 (519)
T KOG0331|consen 244 VLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNK 304 (519)
T ss_pred EeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecch
Confidence 999999999999999999999999 556699999999999999999999999999998865
No 8
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.8e-33 Score=232.33 Aligned_cols=170 Identities=37% Similarity=0.550 Sum_probs=155.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.|+|++||||||.|++.+++++.++.++..+..+.||.+...+..++.+ +|+|+|+|||||++++.+++.+-+++++++
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k-~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVK-GCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhc-cccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 4899999999999999999999998889999999999999888888855 999999999999999999888889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCC-CCeEEEEccCCccccccchhhhhcccCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR-NPVRIEVRAESKSHHASASSQQLASSKTP 159 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+||||++++.||++++..|++.+|+.+|..+||||.+++|+++++..++ +|++|...++.+ ..+.
T Consensus 235 vlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~-------------~~Th 301 (543)
T KOG0342|consen 235 VLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGE-------------RETH 301 (543)
T ss_pred EeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCC-------------cchh
Confidence 99999999999999999999999999999999999999999999999887 599999877742 6788
Q ss_pred CcceeEEEEecCcch-heeeeecccC
Q 029993 160 LGLHLEVLRLNIFWL-QFTLHVVKQN 184 (184)
Q Consensus 160 ~~l~~~~~~~~~~~~-~~~l~~~~~~ 184 (184)
+.+.|-|++++.++. ..++.|+|+|
T Consensus 302 e~l~Qgyvv~~~~~~f~ll~~~LKk~ 327 (543)
T KOG0342|consen 302 ERLEQGYVVAPSDSRFSLLYTFLKKN 327 (543)
T ss_pred hcccceEEeccccchHHHHHHHHHHh
Confidence 999999999998544 7777788775
No 9
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-32 Score=225.34 Aligned_cols=137 Identities=36% Similarity=0.602 Sum_probs=132.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
++||+|||||||.||+.++++|++.+ ++++.+++||.+.-+|...|. .+|.||||||+||.++++. +..++.++.+|
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ~k~Lk-~g~EivVaTPgRlid~Vkm-Katn~~rvS~L 374 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQSKELK-EGAEIVVATPGRLIDMVKM-KATNLSRVSYL 374 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHHHHhhh-cCCeEEEechHHHHHHHHh-hcccceeeeEE
Confidence 47999999999999999999999998 999999999999999999995 8999999999999999999 99999999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (184)
|+||||+|+++||+.++++|...+.+++|.++||||++..++.+++.++.+|+.+....-
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~v 434 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEV 434 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeeh
Confidence 999999999999999999999999999999999999999999999999999999987755
No 10
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.1e-32 Score=215.66 Aligned_cols=153 Identities=34% Similarity=0.534 Sum_probs=145.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
||+|+|||||||.|+.+++.+++++. +++++.-+||.+...+..++ +.+.|++||||||++++.+. +..+++++.++
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl-~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~l 231 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRL-NQTVHLVVGTPGRILDLAKK-GVADLSDCVIL 231 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeee-cCceEEEEcCChhHHHHHhc-ccccchhceEE
Confidence 79999999999999999999999999 89999999999999888887 67999999999999999998 88899999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|+||||.|++..|.+.+..++..+|+++|+++||||+|-.|..|..+++++|..|.+-++ .++.
T Consensus 232 V~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e----------------Ltl~ 295 (459)
T KOG0326|consen 232 VMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE----------------LTLK 295 (459)
T ss_pred EechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh----------------hhhc
Confidence 999999999999999999999999999999999999999999999999999999986544 5889
Q ss_pred cceeEEEEecCc
Q 029993 161 GLHLEVLRLNIF 172 (184)
Q Consensus 161 ~l~~~~~~~~~~ 172 (184)
++.|||..+++-
T Consensus 296 GvtQyYafV~e~ 307 (459)
T KOG0326|consen 296 GVTQYYAFVEER 307 (459)
T ss_pred chhhheeeechh
Confidence 999999999873
No 11
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1e-31 Score=224.13 Aligned_cols=172 Identities=33% Similarity=0.512 Sum_probs=145.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+|||||||||||.|+|+.+++|.+.+.=+..+.+.||...+.+..++ ++|++|+|||||||++++.+++.+.+++|+++
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARL-RKGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARL-RKGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHH-hcCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 58999999999999999999998876446668889999988888888 57999999999999999999999999999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCC-------------CCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCcccc--
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLP-------------KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHH-- 145 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~-------------~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~-- 145 (184)
|+||||++++.||++++..|++.+. ...|.+++|||+++.|.+++..-++||++|..+.......
T Consensus 292 VlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~ 371 (708)
T KOG0348|consen 292 VLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPK 371 (708)
T ss_pred EecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcc
Confidence 9999999999999999999998882 2368999999999999999999999999999544322221
Q ss_pred ----ccchhh----hhcccCCCCcceeEEEEecCcc
Q 029993 146 ----ASASSQ----QLASSKTPLGLHLEVLRLNIFW 173 (184)
Q Consensus 146 ----~~~~~~----~~~~~~~~~~l~~~~~~~~~~~ 173 (184)
.++... .-+....|++|.|.|+++++..
T Consensus 372 ~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKL 407 (708)
T KOG0348|consen 372 DKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKL 407 (708)
T ss_pred hhhhhhcCCcccccccccccCcHHhhhceEecCCch
Confidence 001111 1234678999999999999843
No 12
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.1e-31 Score=215.67 Aligned_cols=166 Identities=25% Similarity=0.397 Sum_probs=144.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCC-CceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCC-ccCCCce
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLP-DVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLV 78 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~-~~~~~l~ 78 (184)
.|+|||||||||+|++.++.+|..+++ .+++.-++++.+-......+ ...|||+||||++++.++.. +. ..++.++
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L-~d~pdIvV~TP~~ll~~~~~-~~~~~~~~l~ 172 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVAL-MDLPDIVVATPAKLLRHLAA-GVLEYLDSLS 172 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHH-ccCCCeEEeChHHHHHHHhh-ccchhhhhee
Confidence 389999999999999999999998875 57777777666544444444 67899999999999999998 66 6799999
Q ss_pred EEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCC
Q 029993 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKT 158 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
++|+||||.++..||++++..+.+.+|+.+|-+++|||+++++..+.+.++++|+.+.+.+++ ...
T Consensus 173 ~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~e--------------l~~ 238 (569)
T KOG0346|consen 173 FLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGE--------------LPN 238 (569)
T ss_pred eEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEecccc--------------CCC
Confidence 999999999999999999999999999999999999999999999999999999999988874 457
Q ss_pred CCcceeEEEEecC-cchheeeeecc
Q 029993 159 PLGLHLEVLRLNI-FWLQFTLHVVK 182 (184)
Q Consensus 159 ~~~l~~~~~~~~~-~~~~~~l~~~~ 182 (184)
|+++.||++.|++ +|...++.++|
T Consensus 239 ~dqL~Qy~v~cse~DKflllyallK 263 (569)
T KOG0346|consen 239 PDQLTQYQVKCSEEDKFLLLYALLK 263 (569)
T ss_pred cccceEEEEEeccchhHHHHHHHHH
Confidence 7999999999998 45555544443
No 13
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2e-31 Score=205.69 Aligned_cols=154 Identities=27% Similarity=0.478 Sum_probs=145.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+|++|.|||||.||.+...++.+|.|++++..++||...+.+...+. +.|||+||||||++.+.++ +.+++++++.+|
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk-~~PhivVgTPGrilALvr~-k~l~lk~vkhFv 190 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLK-NCPHIVVGTPGRILALVRN-RSLNLKNVKHFV 190 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHh-CCCeEEEcCcHHHHHHHHh-ccCchhhcceee
Confidence 68999999999999999999999999999999999999988888874 5899999999999999999 999999999999
Q ss_pred echhhHhhcc-chHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 82 LDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 82 vDEaD~l~~~-~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+||+|.|++. +.+.++.+|.+..|...|..+||||+++++...+++||+||..|.++++. ..+..
T Consensus 191 lDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~--------------KLtLH 256 (387)
T KOG0329|consen 191 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEA--------------KLTLH 256 (387)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchh--------------hhhhh
Confidence 9999999975 68999999999999999999999999999999999999999999999985 66788
Q ss_pred cceeEEEEecC
Q 029993 161 GLHLEVLRLNI 171 (184)
Q Consensus 161 ~l~~~~~~~~~ 171 (184)
+++|+|+..++
T Consensus 257 GLqQ~YvkLke 267 (387)
T KOG0329|consen 257 GLQQYYVKLKE 267 (387)
T ss_pred hHHHHHHhhhh
Confidence 99999999987
No 14
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.96 E-value=1.2e-29 Score=215.65 Aligned_cols=154 Identities=29% Similarity=0.536 Sum_probs=145.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
|++|++||||+|.||++.+.+++..+.++++-.++||.....+..++ +.++|+||||||+..+++. +.++++++++|
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl--k~~rIvIGtPGRi~qL~el-~~~n~s~vrlf 171 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL--KQTRIVIGTPGRIAQLVEL-GAMNMSHVRLF 171 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh--hhceEEecCchHHHHHHHh-cCCCccceeEE
Confidence 68999999999999999999999988899999999999999998888 5789999999999999999 99999999999
Q ss_pred EechhhHhhc-cchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCC
Q 029993 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (184)
Q Consensus 81 VvDEaD~l~~-~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+||||.|++ ..|..++.-|++.+|+.+|++.||||+|.....+..+||+||..|..... ....
T Consensus 172 VLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~---------------d~~L 236 (980)
T KOG4284|consen 172 VLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNAD---------------DVQL 236 (980)
T ss_pred EeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccC---------------Ccee
Confidence 9999999998 46999999999999999999999999999999999999999999999888 7777
Q ss_pred CcceeEEEEecCc
Q 029993 160 LGLHLEVLRLNIF 172 (184)
Q Consensus 160 ~~l~~~~~~~~~~ 172 (184)
-+|+|||+..+..
T Consensus 237 ~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 237 FGIKQYVVAKCSP 249 (980)
T ss_pred echhheeeeccCC
Confidence 8999999988763
No 15
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.96 E-value=1.5e-30 Score=210.63 Aligned_cols=147 Identities=33% Similarity=0.633 Sum_probs=136.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhh-----cCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFIS-----TLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR 75 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~ 75 (184)
++||+|||||||+|++..+..+.. .+|.+++.+|.||.+..++...+ +.|.||+|+|||||.+++.. +.++++
T Consensus 248 ~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v-~~GvHivVATPGRL~DmL~K-K~~sLd 325 (610)
T KOG0341|consen 248 YGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVV-RRGVHIVVATPGRLMDMLAK-KIMSLD 325 (610)
T ss_pred eeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHH-hcCeeEEEcCcchHHHHHHH-hhccHH
Confidence 479999999999999999999876 45889999999999999999887 57999999999999999999 999999
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccch
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASAS 149 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 149 (184)
-++++++||||+|+++||+++++.|+..++..+|+++||||+|..+..|++.-+-.|+.|.++..++...+-+.
T Consensus 326 ~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQ 399 (610)
T KOG0341|consen 326 ACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQ 399 (610)
T ss_pred HHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988766555443
No 16
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.7e-29 Score=209.40 Aligned_cols=163 Identities=36% Similarity=0.543 Sum_probs=146.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.++|++||||||.|+++.++++... ..+++...+||.+...+.+.+ ..+|||+|||||+|.++++. +.+.+.+++++
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~-s~~~~~~~ygg~~~~~q~~~~-~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~ 230 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYL-SGMKSVVVYGGTDLGAQLRFI-KRGCDILVATPGRLKDLIER-GKISLDNCKFL 230 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhccc-ccceeeeeeCCcchhhhhhhh-ccCccEEEecCchhhhhhhc-ceeehhhCcEE
Confidence 4799999999999999999999654 489999999999988888887 57999999999999999999 99999999999
Q ss_pred EechhhHhhc-cchHHHHHHHHHhCCC----CceEEEEeeeCchHHHHHHHHhCCC-CeEEEEccCCccccccchhhhhc
Q 029993 81 VLDEADRLLD-MGFQKQISYIISRLPK----LRRTGLFSATQTEAVEELSKAGLRN-PVRIEVRAESKSHHASASSQQLA 154 (184)
Q Consensus 81 VvDEaD~l~~-~~~~~~l~~i~~~l~~----~~q~i~~SAT~~~~v~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 154 (184)
|+||||+|++ ++|+++++.|+.+.+. .+|.+|||||+|.++..++..++.+ +..+.++.-
T Consensus 231 vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rv-------------- 296 (482)
T KOG0335|consen 231 VLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRV-------------- 296 (482)
T ss_pred EecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeee--------------
Confidence 9999999999 9999999999999864 7899999999999999999999997 888888888
Q ss_pred ccCCCCcceeEEEEecC-cchheeeeec
Q 029993 155 SSKTPLGLHLEVLRLNI-FWLQFTLHVV 181 (184)
Q Consensus 155 ~~~~~~~l~~~~~~~~~-~~~~~~l~~~ 181 (184)
.....++.|....+++ +|...++.++
T Consensus 297 -g~~~~ni~q~i~~V~~~~kr~~Lldll 323 (482)
T KOG0335|consen 297 -GSTSENITQKILFVNEMEKRSKLLDLL 323 (482)
T ss_pred -ccccccceeEeeeecchhhHHHHHHHh
Confidence 6788889899888886 5555554443
No 17
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.96 E-value=8.7e-29 Score=206.21 Aligned_cols=161 Identities=31% Similarity=0.517 Sum_probs=144.5
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.|+|++||||||+||.....+++..+ +++++.++||.+.+++--.+ +.+|+|+|||||+|.+.+.+ ..+-++.+.++
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~EEq~fql-s~gceiviatPgrLid~Len-r~lvl~qctyv 400 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFEEQGFQL-SMGCEIVIATPGRLIDSLEN-RYLVLNQCTYV 400 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchhhhhhhh-hccceeeecCchHHHHHHHH-HHHHhccCceE
Confidence 48999999999999999999999988 89999999999999987777 67999999999999999999 88889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCC-------------------------ceEEEEeeeCchHHHHHHHHhCCCCeEE
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKL-------------------------RRTGLFSATQTEAVEELSKAGLRNPVRI 135 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~-------------------------~q~i~~SAT~~~~v~~~~~~~~~~~~~i 135 (184)
|+||||+|+++||++++..|+.++|.. +|+++||||+|+.++.+++.|+++|+.+
T Consensus 401 vldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~v 480 (673)
T KOG0333|consen 401 VLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVV 480 (673)
T ss_pred eccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEE
Confidence 999999999999999999999999731 6999999999999999999999999999
Q ss_pred EEccCCccccccchhhhhcccCCCCcceeEEEEecC-cchheeee
Q 029993 136 EVRAESKSHHASASSQQLASSKTPLGLHLEVLRLNI-FWLQFTLH 179 (184)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l~ 179 (184)
.++.. ....+.++|.+..+.. ++...+..
T Consensus 481 tig~~---------------gk~~~rveQ~v~m~~ed~k~kkL~e 510 (673)
T KOG0333|consen 481 TIGSA---------------GKPTPRVEQKVEMVSEDEKRKKLIE 510 (673)
T ss_pred EeccC---------------CCCccchheEEEEecchHHHHHHHH
Confidence 99999 6677778777777665 44444433
No 18
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.7e-29 Score=200.27 Aligned_cols=157 Identities=32% Similarity=0.511 Sum_probs=146.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
||++++||||||.|+..+...++.+. ++++..+.||.....+-..+...++||+|||||++.++++. +.+..+.++++
T Consensus 96 qalilaPtreLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~-~~l~~~~iKmf 173 (397)
T KOG0327|consen 96 QALILAPTRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR-GSLSTDGIKMF 173 (397)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc-ccccccceeEE
Confidence 57899999999999999999998877 89999999999988776666667899999999999999998 78889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|+||||.|+..+|.+.+..|++.+|++.|.+++|||+|+++....++|+++|+.|.+... +.+.+
T Consensus 174 vlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~---------------~ltl~ 238 (397)
T KOG0327|consen 174 VLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKD---------------ELTLE 238 (397)
T ss_pred eecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecch---------------hhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999 77899
Q ss_pred cceeEEEEecCcch
Q 029993 161 GLHLEVLRLNIFWL 174 (184)
Q Consensus 161 ~l~~~~~~~~~~~~ 174 (184)
.++|+|+.+..+-+
T Consensus 239 gikq~~i~v~k~~k 252 (397)
T KOG0327|consen 239 GIKQFYINVEKEEK 252 (397)
T ss_pred heeeeeeecccccc
Confidence 99999999987443
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.96 E-value=1.3e-27 Score=209.90 Aligned_cols=154 Identities=30% Similarity=0.543 Sum_probs=140.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
++|||+||||||.|+++.+..+.++.+++++..++||.+...+...+ ..+++|+||||+++.+++.. +.+++++++++
T Consensus 76 ~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l-~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~l 153 (629)
T PRK11634 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL-RQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGL 153 (629)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCcchhhceEE
Confidence 58999999999999999999999888889999999999888887777 56899999999999999988 88999999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|+||||.|++.+|.+++..|++.+|..+|+++||||+|+.+..+++.|+++|..+.+... .....
T Consensus 154 VlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~---------------~~~~~ 218 (629)
T PRK11634 154 VLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSS---------------VTTRP 218 (629)
T ss_pred EeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCc---------------cccCC
Confidence 999999999999999999999999999999999999999999999999999999988766 45566
Q ss_pred cceeEEEEecC
Q 029993 161 GLHLEVLRLNI 171 (184)
Q Consensus 161 ~l~~~~~~~~~ 171 (184)
.+.|.|+.+..
T Consensus 219 ~i~q~~~~v~~ 229 (629)
T PRK11634 219 DISQSYWTVWG 229 (629)
T ss_pred ceEEEEEEech
Confidence 77787777765
No 20
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.1e-28 Score=199.31 Aligned_cols=152 Identities=31% Similarity=0.490 Sum_probs=137.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+|++.||||||.|+.-.+.++. +.+.+..+++||.+..++...+ +.+.+|+|+||++|.++... +.++++++.++|
T Consensus 297 ~lvl~ptreLalqie~e~~kys--yng~ksvc~ygggnR~eqie~l-krgveiiiatPgrlndL~~~-n~i~l~siTYlV 372 (629)
T KOG0336|consen 297 VLVLTPTRELALQIEGEVKKYS--YNGLKSVCVYGGGNRNEQIEDL-KRGVEIIIATPGRLNDLQMD-NVINLASITYLV 372 (629)
T ss_pred eEEEeccHHHHHHHHhHHhHhh--hcCcceEEEecCCCchhHHHHH-hcCceEEeeCCchHhhhhhc-CeeeeeeeEEEE
Confidence 6899999999999999999984 3489999999999999999998 57999999999999999988 999999999999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCCc
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLG 161 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+||||+|++++|+.+++.|+--+.+++|+++.|||||+.|.+++..|+++|..+.++.-. -..-.+
T Consensus 373 lDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLd--------------L~a~~s 438 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLD--------------LVAVKS 438 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccc--------------eeeeee
Confidence 999999999999999999999999999999999999999999999999999999998872 233466
Q ss_pred ceeEEEEecC
Q 029993 162 LHLEVLRLNI 171 (184)
Q Consensus 162 l~~~~~~~~~ 171 (184)
++|++++..+
T Consensus 439 VkQ~i~v~~d 448 (629)
T KOG0336|consen 439 VKQNIIVTTD 448 (629)
T ss_pred eeeeEEeccc
Confidence 7777755554
No 21
>PTZ00110 helicase; Provisional
Probab=99.95 E-value=2e-27 Score=206.26 Aligned_cols=154 Identities=33% Similarity=0.556 Sum_probs=135.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+||||+||||||.|+++.+.+++... ++++..++||.....+...+ ..+++|+|+||++|.+++.. +..++++++++
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~~~l-~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~l 281 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQIYAL-RRGVEILIACPGRLIDFLES-NVTNLRRVTYL 281 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHHHHH-HcCCCEEEECHHHHHHHHHc-CCCChhhCcEE
Confidence 37999999999999999999998776 79999999999888777777 56899999999999999998 78899999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCC-CCeEEEEccCCccccccchhhhhcccCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR-NPVRIEVRAESKSHHASASSQQLASSKTP 159 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+||||+|++.+|...+..|+..+++++|+++||||++.++..+++.++. +|+.+.++... ....
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~--------------l~~~ 347 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD--------------LTAC 347 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc--------------cccC
Confidence 99999999999999999999999999999999999999999999999986 68888876552 2234
Q ss_pred CcceeEEEEecC
Q 029993 160 LGLHLEVLRLNI 171 (184)
Q Consensus 160 ~~l~~~~~~~~~ 171 (184)
.+++|.+..++.
T Consensus 348 ~~i~q~~~~~~~ 359 (545)
T PTZ00110 348 HNIKQEVFVVEE 359 (545)
T ss_pred CCeeEEEEEEec
Confidence 566777766665
No 22
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=3.1e-27 Score=201.64 Aligned_cols=153 Identities=36% Similarity=0.623 Sum_probs=139.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
++||++||||||.|+.+.++.++.+.+++++..++||.+...+...+ ..+++|+||||+++.+++.. +.+++++++++
T Consensus 74 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l-~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~l 151 (460)
T PRK11776 74 QALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSL-EHGAHIIVGTPGRILDHLRK-GTLDLDALNTL 151 (460)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHh-cCCCCEEEEChHHHHHHHHc-CCccHHHCCEE
Confidence 48999999999999999999998877789999999999988887777 47899999999999999998 88899999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|+||||.|++.+|...+..+++.+|+.+|+++||||+++++..++..++++|..+.+... . ...
T Consensus 152 ViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~---------------~-~~~ 215 (460)
T PRK11776 152 VLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVEST---------------H-DLP 215 (460)
T ss_pred EEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcC---------------C-CCC
Confidence 999999999999999999999999999999999999999999999999999999988665 3 345
Q ss_pred cceeEEEEecC
Q 029993 161 GLHLEVLRLNI 171 (184)
Q Consensus 161 ~l~~~~~~~~~ 171 (184)
.++|+|+.++.
T Consensus 216 ~i~~~~~~~~~ 226 (460)
T PRK11776 216 AIEQRFYEVSP 226 (460)
T ss_pred CeeEEEEEeCc
Confidence 58888888876
No 23
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.8e-28 Score=199.80 Aligned_cols=162 Identities=35% Similarity=0.532 Sum_probs=150.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
|+|++||||||.|+.++.+.++++. ++++.+++||...+++...+ +++||||++||++++.+.-. -.+.+++++|+|
T Consensus 93 alilsptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l-~~npDii~ATpgr~~h~~ve-m~l~l~sveyVV 169 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILL-NENPDIIIATPGRLLHLGVE-MTLTLSSVEYVV 169 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHh-ccCCCEEEecCceeeeeehh-eeccccceeeee
Confidence 7999999999999999999999887 99999999999999999888 67999999999999998877 458899999999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCCc
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLG 161 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+||||.++++||.+.+..++.++|.++|+++||||+|...-.+++..+.+|+.+.++.+ .+..+.
T Consensus 170 fdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldve---------------tkise~ 234 (529)
T KOG0337|consen 170 FDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVE---------------TKISEL 234 (529)
T ss_pred ehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehh---------------hhcchh
Confidence 99999999999999999999999999999999999999999999999999999999888 778889
Q ss_pred ceeEEEEecC-cchheeeeec
Q 029993 162 LHLEVLRLNI-FWLQFTLHVV 181 (184)
Q Consensus 162 l~~~~~~~~~-~~~~~~l~~~ 181 (184)
++..|..+.+ +|.-++++.+
T Consensus 235 lk~~f~~~~~a~K~aaLl~il 255 (529)
T KOG0337|consen 235 LKVRFFRVRKAEKEAALLSIL 255 (529)
T ss_pred hhhheeeeccHHHHHHHHHHH
Confidence 9999999987 6666666554
No 24
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=7.1e-27 Score=197.53 Aligned_cols=152 Identities=37% Similarity=0.574 Sum_probs=135.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+||||+||||||.|+++.+..+++.. ++++..++||.....+...+ +.++||+||||++|.+++.. +.+++++++++
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~l 161 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVL-ESGVDILIGTTGRLIDYAKQ-NHINLGAIQVV 161 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCcccccccEE
Confidence 48999999999999999999998877 89999999998887777776 56899999999999999988 88999999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCC--CceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKT 158 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~--~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
|+||||.|++.+|..++..+++.++. .+|.++||||++..+..++..++.+|..+.+... ...
T Consensus 162 ViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~---------------~~~ 226 (423)
T PRK04837 162 VLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPE---------------QKT 226 (423)
T ss_pred EEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCC---------------CcC
Confidence 99999999999999999999999984 5788999999999999999999999999988766 445
Q ss_pred CCcceeEEEEec
Q 029993 159 PLGLHLEVLRLN 170 (184)
Q Consensus 159 ~~~l~~~~~~~~ 170 (184)
...+++.+....
T Consensus 227 ~~~i~~~~~~~~ 238 (423)
T PRK04837 227 GHRIKEELFYPS 238 (423)
T ss_pred CCceeEEEEeCC
Confidence 556666666554
No 25
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.95 E-value=1.3e-26 Score=200.27 Aligned_cols=152 Identities=30% Similarity=0.524 Sum_probs=135.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+||||+||||||.|+++.++.+++.. ++++..++||.....+...+ ..+++|+||||++|.+++.. +.+.+++++++
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~~q~~~l-~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~l 274 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMPQQLYRI-QQGVELIVGTPGRLIDLLSK-HDIELDNVSVL 274 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCccchheeEE
Confidence 48999999999999999999998877 78999999999888887777 56899999999999999998 78899999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|+||||.|++.+|...+..++..++ ++|+++||||++++++.+++.+++++..+.++.. .....
T Consensus 275 ViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~---------------~~~~~ 338 (518)
T PLN00206 275 VLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNP---------------NRPNK 338 (518)
T ss_pred EeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC---------------CCCCc
Confidence 9999999999999999999999985 5899999999999999999999999999998776 44455
Q ss_pred cceeEEEEecC
Q 029993 161 GLHLEVLRLNI 171 (184)
Q Consensus 161 ~l~~~~~~~~~ 171 (184)
.++|.++.++.
T Consensus 339 ~v~q~~~~~~~ 349 (518)
T PLN00206 339 AVKQLAIWVET 349 (518)
T ss_pred ceeEEEEeccc
Confidence 66777776664
No 26
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.95 E-value=1.4e-26 Score=197.47 Aligned_cols=153 Identities=35% Similarity=0.622 Sum_probs=137.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
++|||+||||||.|+.+.+..+.++. ++++..++||.+...+...+ ..++||+||||++|++++.. +.+++++++++
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l-~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~l 153 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKL-RGGVDVLVATPGRLLDLEHQ-NAVKLDQVEIL 153 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHH-cCCCcEEEEChHHHHHHHHc-CCcccccceEE
Confidence 38999999999999999999998877 79999999999888877776 56899999999999999988 78899999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|+||||.|++.+|...+..++..++..+|.++||||+++++..++.+++.+|..+.+... .....
T Consensus 154 ViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~---------------~~~~~ 218 (456)
T PRK10590 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR---------------NTASE 218 (456)
T ss_pred EeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecc---------------ccccc
Confidence 999999999999999999999999999999999999999999999999999999887666 44556
Q ss_pred cceeEEEEecC
Q 029993 161 GLHLEVLRLNI 171 (184)
Q Consensus 161 ~l~~~~~~~~~ 171 (184)
.+.+++..++.
T Consensus 219 ~i~~~~~~~~~ 229 (456)
T PRK10590 219 QVTQHVHFVDK 229 (456)
T ss_pred ceeEEEEEcCH
Confidence 67777776664
No 27
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=3.5e-26 Score=199.44 Aligned_cols=154 Identities=34% Similarity=0.556 Sum_probs=136.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
++|||+||||||.|+++.+.+++... ++++..++||.....+...+ ++++|||||||++|++++.+.+.+.++++++|
T Consensus 86 raLIl~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l-~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~l 163 (572)
T PRK04537 86 RALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELL-QQGVDVIIATPGRLIDYVKQHKVVSLHACEIC 163 (572)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHH-hCCCCEEEECHHHHHHHHHhccccchhheeee
Confidence 48999999999999999999998877 89999999999888777666 56899999999999999987446789999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCC--CceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKT 158 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~--~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
|+||||.|++.+|..++..+++.++. .+|+++||||++.++..+...++.+|..+.+... ...
T Consensus 164 ViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~---------------~~~ 228 (572)
T PRK04537 164 VLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETE---------------TIT 228 (572)
T ss_pred EecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccc---------------ccc
Confidence 99999999999999999999999987 7899999999999999999999999988877666 445
Q ss_pred CCcceeEEEEecC
Q 029993 159 PLGLHLEVLRLNI 171 (184)
Q Consensus 159 ~~~l~~~~~~~~~ 171 (184)
...+.|+++.+..
T Consensus 229 ~~~i~q~~~~~~~ 241 (572)
T PRK04537 229 AARVRQRIYFPAD 241 (572)
T ss_pred ccceeEEEEecCH
Confidence 6667777776654
No 28
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=5.9e-27 Score=187.61 Aligned_cols=160 Identities=30% Similarity=0.379 Sum_probs=139.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcC---CccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD---VLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~---~~~~~~l 77 (184)
+|+|++||||||.|+.+.|..+++.. ++++..++||.+.-.+...+ ..+||++|+||||+.+++..++ ...++++
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L-~~rPHvVvatPGRlad~l~sn~~~~~~~~~rl 154 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAIL-SDRPHVVVATPGRLADHLSSNLGVCSWIFQRL 154 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhc-ccCCCeEecCccccccccccCCccchhhhhce
Confidence 68999999999999999999998877 89999999999987777777 5789999999999999998742 3348999
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCC--CeEEEEccCCccccccchhhhhcc
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRN--PVRIEVRAESKSHHASASSQQLAS 155 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~ 155 (184)
+++|+||||++++.+|.+.+.-+.+.+|+.+|.++||||+++.+.++..-.... +...+..+.
T Consensus 155 kflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~--------------- 219 (442)
T KOG0340|consen 155 KFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDG--------------- 219 (442)
T ss_pred eeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCC---------------
Confidence 999999999999999999999999999999999999999999998888776665 444444444
Q ss_pred cCCCCcceeEEEEecCcchhee
Q 029993 156 SKTPLGLHLEVLRLNIFWLQFT 177 (184)
Q Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~ 177 (184)
..++++|.|.|+.|+.+-+..+
T Consensus 220 vstvetL~q~yI~~~~~vkdaY 241 (442)
T KOG0340|consen 220 VSTVETLYQGYILVSIDVKDAY 241 (442)
T ss_pred CCchhhhhhheeecchhhhHHH
Confidence 6799999999999998544433
No 29
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.9e-26 Score=192.09 Aligned_cols=165 Identities=25% Similarity=0.432 Sum_probs=133.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCC--ccCCCce
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV--LDFRNLV 78 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~--~~~~~l~ 78 (184)
+|||++||||||.||.+.+..++.+. ++++..++||.....|.+.+ +..|||+|+|||||++++.+.+. -++++++
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL-~~~p~IVVATPGRlweli~e~n~~l~~~k~vk 342 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKT-QIRVASITGGLAVQKQQRLL-NQRPDIVVATPGRLWELIEEDNTHLGNFKKVK 342 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhcccc-CeEEEEeechhHHHHHHHHH-hcCCCEEEecchHHHHHHHhhhhhhhhhhhce
Confidence 48999999999999999999998865 99999999999988887777 67999999999999999998333 2599999
Q ss_pred EEEechhhHhhccchHHHHHHHHHhCC-----CCceEEEEeeeCchH---------------------HHHHHHH--hCC
Q 029993 79 ILVLDEADRLLDMGFQKQISYIISRLP-----KLRRTGLFSATQTEA---------------------VEELSKA--GLR 130 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~~~l~~i~~~l~-----~~~q~i~~SAT~~~~---------------------v~~~~~~--~~~ 130 (184)
++|+||||+|+..|+.+.+..|++.+. ..+|++.||||++-. ++.+.+. +..
T Consensus 343 cLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~ 422 (731)
T KOG0347|consen 343 CLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRG 422 (731)
T ss_pred EEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccC
Confidence 999999999999999999999988775 468999999999722 2223332 334
Q ss_pred CCeEEEEccCCccccccchhhhhcccCCCCcceeEEEEecC-cchheeeeecc
Q 029993 131 NPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEVLRLNI-FWLQFTLHVVK 182 (184)
Q Consensus 131 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l~~~~ 182 (184)
.|..|.+... ..+..++..-.+.|++ +|...+++|+-
T Consensus 423 kpkiiD~t~q---------------~~ta~~l~Es~I~C~~~eKD~ylyYfl~ 460 (731)
T KOG0347|consen 423 KPKIIDLTPQ---------------SATASTLTESLIECPPLEKDLYLYYFLT 460 (731)
T ss_pred CCeeEecCcc---------------hhHHHHHHHHhhcCCccccceeEEEEEe
Confidence 6788888877 5666777777777876 55555555553
No 30
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2.4e-25 Score=190.75 Aligned_cols=154 Identities=36% Similarity=0.535 Sum_probs=134.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+||||+||+|||.|+++.++.+.++. ++++..++||.+...+.+.+...+++|+|+||++|+.+... +...+++++++
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~l 241 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVM 241 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceE
Confidence 48999999999999999999998877 89999999998888887777667899999999999998887 77889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCC--CceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKT 158 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~--~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
|+||||.+++.+|...+.++++.++. .+|++++|||++.++..+++.++.+|..+.+... ...
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~---------------~~~ 306 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPE---------------NVA 306 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccC---------------cCC
Confidence 99999999999999999999999965 5799999999999999999999999999888766 444
Q ss_pred CCcceeEEEEecC
Q 029993 159 PLGLHLEVLRLNI 171 (184)
Q Consensus 159 ~~~l~~~~~~~~~ 171 (184)
..++.+++..+..
T Consensus 307 ~~~~~~~~~~~~~ 319 (475)
T PRK01297 307 SDTVEQHVYAVAG 319 (475)
T ss_pred CCcccEEEEEecc
Confidence 4555555555543
No 31
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.93 E-value=5.2e-25 Score=186.65 Aligned_cols=152 Identities=31% Similarity=0.489 Sum_probs=136.8
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+||++||+|||.|+++.+..++++. ++++..++||.....+...+ .++++|+||||++|++++.. +.+++++++++|
T Consensus 76 ~lil~Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l-~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lV 152 (434)
T PRK11192 76 ILILTPTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVF-SENQDIVVATPGRLLQYIKE-ENFDCRAVETLI 152 (434)
T ss_pred EEEECCcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHh-cCCCCEEEEChHHHHHHHHc-CCcCcccCCEEE
Confidence 7999999999999999999999877 89999999999887776665 56899999999999999998 888999999999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCch-HHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE-AVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~-~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+||||.|++.+|...+..+...++...|+++||||++. .+..+...++.+|..+..... .....
T Consensus 153 iDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~~ 217 (434)
T PRK11192 153 LDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS---------------RRERK 217 (434)
T ss_pred EECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC---------------ccccc
Confidence 99999999999999999999999999999999999985 588999999999999988776 55667
Q ss_pred cceeEEEEecC
Q 029993 161 GLHLEVLRLNI 171 (184)
Q Consensus 161 ~l~~~~~~~~~ 171 (184)
++.|+|..++.
T Consensus 218 ~i~~~~~~~~~ 228 (434)
T PRK11192 218 KIHQWYYRADD 228 (434)
T ss_pred CceEEEEEeCC
Confidence 78888887764
No 32
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=3.1e-26 Score=190.09 Aligned_cols=170 Identities=26% Similarity=0.396 Sum_probs=145.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCC----cEeeechHHHHHHHHhcCCccCCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGA----NLLIGTPGRLYDIMERMDVLDFRN 76 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~IlV~TP~~l~~~~~~~~~~~~~~ 76 (184)
.||||+|||||+.|++.+|.+++... ++.|+.+.|..+.+.+...+.+..+ ||+|+|||||.+++.+++.+++++
T Consensus 217 RavVivPtr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~ 295 (620)
T KOG0350|consen 217 RAVVIVPTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKH 295 (620)
T ss_pred EEEEEeeHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhh
Confidence 48999999999999999999999887 8999999999999999888877777 999999999999999889999999
Q ss_pred ceEEEechhhHhhccchHHHHHHHHHhCCCC----------------------------------ceEEEEeeeCchHHH
Q 029993 77 LVILVLDEADRLLDMGFQKQISYIISRLPKL----------------------------------RRTGLFSATQTEAVE 122 (184)
Q Consensus 77 l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~----------------------------------~q~i~~SAT~~~~v~ 122 (184)
|+|+|+||||+|++..|.+|+-.++..++.. -+.++||||++..-.
T Consensus 296 LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~ 375 (620)
T KOG0350|consen 296 LRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPS 375 (620)
T ss_pred ceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChH
Confidence 9999999999999999998888777666321 158899999998888
Q ss_pred HHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCCcceeEEEEecC-cchheeeeecc
Q 029993 123 ELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEVLRLNI-FWLQFTLHVVK 182 (184)
Q Consensus 123 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~l~~~~ 182 (184)
.+...-++.|..+.+... ....+.+|+.++|+++.++. .+...+..+++
T Consensus 376 Kl~~l~l~~Prl~~v~~~-----------~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~ 425 (620)
T KOG0350|consen 376 KLKDLTLHIPRLFHVSKP-----------LIGRYSLPSSLSHRLVVTEPKFKPLAVYALIT 425 (620)
T ss_pred HHhhhhcCCCceEEeecc-----------cceeeecChhhhhceeecccccchHhHHHHHH
Confidence 999999999977776532 12348999999999999998 56555555443
No 33
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.93 E-value=3.4e-26 Score=202.84 Aligned_cols=166 Identities=33% Similarity=0.505 Sum_probs=148.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhc--CCccCCCce
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDFRNLV 78 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~--~~~~~~~l~ 78 (184)
+|+|++||||||.||++.+++|++.. +++++.++||....++...+. .++.|+|||||++.+++..+ +..+++++.
T Consensus 440 i~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg~~~~~qiaelk-Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 440 IALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGGSGISQQIAELK-RGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCCccHHHHHHHHh-cCCceEEeccchhhhhHhhcCCccccccccc
Confidence 48999999999999999999999986 999999999999999999984 67999999999999998652 344688888
Q ss_pred EEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCC
Q 029993 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKT 158 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
++|+||||+|++++|.+++..|++.+++.+|+++||||+|..++.++...++.|+.|.++-. ...
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~---------------svV 582 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGR---------------SVV 582 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccc---------------eeE
Confidence 99999999999999999999999999999999999999999999999999999999998866 567
Q ss_pred CCcceeEEEEec-C-cchheeeeeccc
Q 029993 159 PLGLHLEVLRLN-I-FWLQFTLHVVKQ 183 (184)
Q Consensus 159 ~~~l~~~~~~~~-~-~~~~~~l~~~~~ 183 (184)
-..+.|.+.+|+ . +|...++.+|+.
T Consensus 583 ~k~V~q~v~V~~~e~eKf~kL~eLl~e 609 (997)
T KOG0334|consen 583 CKEVTQVVRVCAIENEKFLKLLELLGE 609 (997)
T ss_pred eccceEEEEEecCchHHHHHHHHHHHH
Confidence 788888888888 3 677666666543
No 34
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1e-25 Score=181.53 Aligned_cols=157 Identities=27% Similarity=0.373 Sum_probs=139.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
||+.|+||||||.|+.+++.+.+++. +++......|+..+.- ..+ ..+|+|||||.+++++...+.++++.++.+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG-~~i---~eqIviGTPGtv~Dlm~klk~id~~kikvf 236 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRG-NKL---TEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccC-Ccc---hhheeeCCCccHHHHHHHHHhhChhhceEE
Confidence 68889999999999999999999988 8999888877733221 112 248999999999999988788999999999
Q ss_pred EechhhHhhcc-chHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCC
Q 029993 81 VLDEADRLLDM-GFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (184)
Q Consensus 81 VvDEaD~l~~~-~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+||||.|++. ||.++-.+|.+.+|+++|.++||||+...++.|+.+.++||..+.+..+ +...
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~e---------------el~L 301 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKRE---------------ELAL 301 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehh---------------hccc
Confidence 99999999985 7999999999999999999999999999999999999999999999999 8899
Q ss_pred CcceeEEEEecC--cchhee
Q 029993 160 LGLHLEVLRLNI--FWLQFT 177 (184)
Q Consensus 160 ~~l~~~~~~~~~--~~~~~~ 177 (184)
.+++|+|+.|+. +|+..+
T Consensus 302 ~~IkQlyv~C~~~~~K~~~l 321 (477)
T KOG0332|consen 302 DNIKQLYVLCACRDDKYQAL 321 (477)
T ss_pred cchhhheeeccchhhHHHHH
Confidence 999999999997 455443
No 35
>PTZ00424 helicase 45; Provisional
Probab=99.91 E-value=7.6e-23 Score=171.49 Aligned_cols=153 Identities=35% Similarity=0.589 Sum_probs=135.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+|||+||+|||.|+.+.+..++... ++.+..+.|+.....+...+ ..+++|+||||+++.+++.. +...+++++++
T Consensus 98 ~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lv 174 (401)
T PTZ00424 98 QALILAPTRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKL-KAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLF 174 (401)
T ss_pred eEEEECCCHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHH-cCCCCEEEECcHHHHHHHHh-CCcccccccEE
Confidence 37999999999999999999998765 78888899998877776666 46789999999999999988 78889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|+||||.+++.+|...+..++++++++.|++++|||+++++..+...++++|..+.+... .....
T Consensus 175 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 239 (401)
T PTZ00424 175 ILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKD---------------ELTLE 239 (401)
T ss_pred EEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCC---------------CcccC
Confidence 999999999999999999999999999999999999999999999999999998877665 44566
Q ss_pred cceeEEEEecC
Q 029993 161 GLHLEVLRLNI 171 (184)
Q Consensus 161 ~l~~~~~~~~~ 171 (184)
++.++|+.++.
T Consensus 240 ~~~~~~~~~~~ 250 (401)
T PTZ00424 240 GIRQFYVAVEK 250 (401)
T ss_pred CceEEEEecCh
Confidence 77777777764
No 36
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.88 E-value=2.4e-21 Score=148.19 Aligned_cols=131 Identities=46% Similarity=0.760 Sum_probs=119.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
++|++||++|+.|+...++.+.... ++++..+.|+.........+ .++++|+||||+++..++.+ +..+++++.++|
T Consensus 72 viii~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~T~~~l~~~l~~-~~~~~~~l~~lI 148 (203)
T cd00268 72 ALILAPTRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKL-KRGPHIVVATPGRLLDLLER-GKLDLSKVKYLV 148 (203)
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-cCCCCEEEEChHHHHHHHHc-CCCChhhCCEEE
Confidence 7999999999999999999998765 78889899988876665555 46899999999999999988 678899999999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEE
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRI 135 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i 135 (184)
+||+|.+.+.++...+..+.+.+++.+|++++|||+++++..+...++++|+.|
T Consensus 149 vDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 149 LDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred EeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999998889999999999999999999999999999999999999999886
No 37
>PRK09401 reverse gyrase; Reviewed
Probab=99.86 E-value=7.3e-21 Score=176.11 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=116.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcch-----HHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV-----KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFR 75 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~ 75 (184)
+++||+||||||.|+++.+++++... ++.+..++|+... .+....+.++++||+||||++|.+++. .+..+
T Consensus 125 ~alIL~PTreLa~Qi~~~l~~l~~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~ 200 (1176)
T PRK09401 125 KSYIIFPTRLLVEQVVEKLEKFGEKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKK 200 (1176)
T ss_pred eEEEEeccHHHHHHHHHHHHHHhhhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hcccc
Confidence 48999999999999999999999876 7888888877542 233344444579999999999999875 35567
Q ss_pred CceEEEechhhHhhc-----------cchH-HHHHHHHHhCCC------------------------CceEEEEeeeCch
Q 029993 76 NLVILVLDEADRLLD-----------MGFQ-KQISYIISRLPK------------------------LRRTGLFSATQTE 119 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~-----------~~~~-~~l~~i~~~l~~------------------------~~q~i~~SAT~~~ 119 (184)
+++++|+||||.|++ .||. +++..+++.++. .+|+++||||+++
T Consensus 201 ~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~ 280 (1176)
T PRK09401 201 KFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRP 280 (1176)
T ss_pred ccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCc
Confidence 799999999999996 6774 788888888765 6899999999987
Q ss_pred HHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCCcceeEEEEec
Q 029993 120 AVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEVLRLN 170 (184)
Q Consensus 120 ~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (184)
+... ...++++..+.++.. .....++.|.|+.++
T Consensus 281 ~~~~--~~l~~~ll~~~v~~~---------------~~~~rnI~~~yi~~~ 314 (1176)
T PRK09401 281 RGNR--VKLFRELLGFEVGSP---------------VFYLRNIVDSYIVDE 314 (1176)
T ss_pred cchH--HHHhhccceEEecCc---------------ccccCCceEEEEEcc
Confidence 5222 234567777777666 456788999998875
No 38
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.85 E-value=2.4e-20 Score=166.26 Aligned_cols=132 Identities=18% Similarity=0.197 Sum_probs=111.0
Q ss_pred CEEE-EeccHHHHHHHHHHHHHhhhcCC----------------------CceEEEEECCcchHHHHHHHHHcCCcEeee
Q 029993 1 MGMI-ISPTRELSAQIYHVAQPFISTLP----------------------DVKSMLLVGGVEVKADVKKIEEEGANLLIG 57 (184)
Q Consensus 1 ~alI-l~PtreLa~Qi~~~~~~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~ 57 (184)
++|| ++||||||.|+++.+++++++++ ++++..++||.+...+...+ ..+|+||||
T Consensus 63 ~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l-~~~p~IIVg 141 (844)
T TIGR02621 63 RRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLD-PHRPAVIVG 141 (844)
T ss_pred ceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhc-CCCCcEEEE
Confidence 3566 55999999999999999998663 48899999999988888777 578999999
Q ss_pred chHHHHHHHHhcCCcc----------------CCCceEEEechhhHhhccchHHHHHHHHHhC--CCC---ceEEEEeee
Q 029993 58 TPGRLYDIMERMDVLD----------------FRNLVILVLDEADRLLDMGFQKQISYIISRL--PKL---RRTGLFSAT 116 (184)
Q Consensus 58 TP~~l~~~~~~~~~~~----------------~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l--~~~---~q~i~~SAT 116 (184)
|+ +++.. +.++ +++++++|+|||| ++++|.+.+..|++.+ ++. +|+++||||
T Consensus 142 T~----D~i~s-r~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT 214 (844)
T TIGR02621 142 TV----DMIGS-RLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTAT 214 (844)
T ss_pred CH----HHHcC-CccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecC
Confidence 96 45544 4442 7899999999999 6789999999999975 442 699999999
Q ss_pred CchHHHHHHHHhCCCCeEEEEccC
Q 029993 117 QTEAVEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 117 ~~~~v~~~~~~~~~~~~~i~~~~~ 140 (184)
++.++..+...++.+|..+.+...
T Consensus 215 ~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 215 SRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred CCccHHHHHHHHccCCceeecccc
Confidence 999999999999988887776554
No 39
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.83 E-value=2.9e-19 Score=132.42 Aligned_cols=121 Identities=32% Similarity=0.530 Sum_probs=104.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
++|++|+++|+.|+.+.+.+++.. +++++..++|+.....+......++++|+|+||+++.+++.. +..++.++.++|
T Consensus 47 ~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~-~~~~~~~~~~iV 124 (169)
T PF00270_consen 47 VLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISN-GKINISRLSLIV 124 (169)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHT-TSSTGTTESEEE
T ss_pred EEEEeecccccccccccccccccc-cccccccccccccccccccccccccccccccCcchhhccccc-cccccccceeec
Confidence 789999999999999999999876 478999999998866444433366899999999999999998 656888899999
Q ss_pred echhhHhhccchHHHHHHHHHhCCC--CceEEEEeeeCchHHHHH
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEEL 124 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~--~~q~i~~SAT~~~~v~~~ 124 (184)
+||+|.+...++...+..+++.+.+ +.|++++|||+++.++.+
T Consensus 125 iDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 125 IDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLPSNVEKL 169 (169)
T ss_dssp EETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSSTHHHHHH
T ss_pred cCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCChhHhhC
Confidence 9999999988889999999998843 589999999999777653
No 40
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.81 E-value=5.8e-20 Score=151.26 Aligned_cols=154 Identities=28% Similarity=0.505 Sum_probs=138.3
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcC--CCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTL--PDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+|+|+-|+||||.|+++.++++-.+. |.++..++.||.....|...+ ..+.||+||||+|+.+++.. +.+.+..++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql-~~g~~ivvGtpgRl~~~is~-g~~~lt~cr 365 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQL-KDGTHIVVGTPGRLLQPISK-GLVTLTHCR 365 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHh-hcCceeeecCchhhhhhhhc-cceeeeeeE
Confidence 48999999999999999999987766 557777899998888888887 57999999999999999999 999999999
Q ss_pred EEEechhhHhhccchHHHHHHHHHhCCC------CceEEEEeeeCc-hHHHHHHHHhCCCCeEEEEccCCccccccchhh
Q 029993 79 ILVLDEADRLLDMGFQKQISYIISRLPK------LRRTGLFSATQT-EAVEELSKAGLRNPVRIEVRAESKSHHASASSQ 151 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~~~l~~i~~~l~~------~~q~i~~SAT~~-~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 151 (184)
|+|+||||.++++++.+.+.++..++|+ ..|.+++|||+. -+|+.+..+.|+-|..+.+..+
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkge----------- 434 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGE----------- 434 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccc-----------
Confidence 9999999999999999999999999974 569999999985 5788899999999999999988
Q ss_pred hhcccCCCCcceeEEEEecC
Q 029993 152 QLASSKTPLGLHLEVLRLNI 171 (184)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~~~ 171 (184)
+..|++..|....+.+
T Consensus 435 ----D~vpetvHhvv~lv~p 450 (725)
T KOG0349|consen 435 ----DLVPETVHHVVKLVCP 450 (725)
T ss_pred ----cccchhhccceeecCC
Confidence 8889988888777665
No 41
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.79 E-value=2.1e-18 Score=154.45 Aligned_cols=130 Identities=18% Similarity=0.221 Sum_probs=99.6
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHh--cC-CccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER--MD-VLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~--~~-~~~~~~l 77 (184)
+||||+||||||.|+.+.+++++ . .++++..+.|+... .+...+ ..+++|+|+||++|...+-. .+ ...++++
T Consensus 83 ~aL~l~PtraLa~q~~~~l~~l~-~-~~i~v~~~~Gdt~~-~~r~~i-~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l 158 (742)
T TIGR03817 83 TALYLAPTKALAADQLRAVRELT-L-RGVRPATYDGDTPT-EERRWA-REHARYVLTNPDMLHRGILPSHARWARFLRRL 158 (742)
T ss_pred EEEEEcChHHHHHHHHHHHHHhc-c-CCeEEEEEeCCCCH-HHHHHH-hcCCCEEEEChHHHHHhhccchhHHHHHHhcC
Confidence 48999999999999999999996 3 37888877777664 344444 46799999999998753321 01 1238999
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhC-------CCCceEEEEeeeCchHHHHHHHHhCCCCeEEE
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRL-------PKLRRTGLFSATQTEAVEELSKAGLRNPVRIE 136 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l-------~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~ 136 (184)
+++|+||||.|.+ .|+.++..+++++ +.++|++++|||+++..+ ++++++.+|..+.
T Consensus 159 ~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i 222 (742)
T TIGR03817 159 RYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV 222 (742)
T ss_pred CEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE
Confidence 9999999999976 4777766665554 567899999999998855 6888888886553
No 42
>PRK14701 reverse gyrase; Provisional
Probab=99.78 E-value=1.5e-18 Score=164.19 Aligned_cols=152 Identities=20% Similarity=0.183 Sum_probs=115.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCC-CceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLP-DVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRN 76 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~ 76 (184)
++|||+||+||+.|+++.++.++.... ++++..++|+.+..++.. .+.++.+||+||||++|.+.+.. . .. .+
T Consensus 124 ~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~-l-~~-~~ 200 (1638)
T PRK14701 124 KCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE-M-KH-LK 200 (1638)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH-H-hh-CC
Confidence 489999999999999999999987652 467788889887666533 34344699999999999987765 2 22 78
Q ss_pred ceEEEechhhHhhc-----------cchHHHHHH----HHH----------------------hCCCCce-EEEEeeeCc
Q 029993 77 LVILVLDEADRLLD-----------MGFQKQISY----IIS----------------------RLPKLRR-TGLFSATQT 118 (184)
Q Consensus 77 l~~lVvDEaD~l~~-----------~~~~~~l~~----i~~----------------------~l~~~~q-~i~~SAT~~ 118 (184)
++++|+||||.|++ .||.+++.. |++ .+++.+| .++||||++
T Consensus 201 i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~ 280 (1638)
T PRK14701 201 FDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGK 280 (1638)
T ss_pred CCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCC
Confidence 99999999999986 588888864 432 3455666 677999999
Q ss_pred hHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCCcceeEEEEecCc
Q 029993 119 EAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEVLRLNIF 172 (184)
Q Consensus 119 ~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 172 (184)
++.. ...+++++..+.++.. .....++.|.|+.++..
T Consensus 281 ~r~~--~~~l~~~~l~f~v~~~---------------~~~lr~i~~~yi~~~~~ 317 (1638)
T PRK14701 281 AKGD--RVKLYRELLGFEVGSG---------------RSALRNIVDVYLNPEKI 317 (1638)
T ss_pred chhH--HHHHhhcCeEEEecCC---------------CCCCCCcEEEEEECCHH
Confidence 7422 2244578888888776 55778899999877654
No 43
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.77 E-value=7.7e-18 Score=156.29 Aligned_cols=148 Identities=22% Similarity=0.218 Sum_probs=108.5
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEE---EEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSM---LLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDF 74 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~ 74 (184)
+++||+||||||.|+++.+.+++... ++++. .++||.+..++. ..+.+++++|+||||++|.+.+.. +..
T Consensus 123 ~vLIL~PTreLa~Qi~~~l~~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~---l~~ 198 (1171)
T TIGR01054 123 RCYIILPTTLLVIQVAEKISSLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE---LGP 198 (1171)
T ss_pred eEEEEeCHHHHHHHHHHHHHHHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH---hcC
Confidence 48999999999999999999998865 55443 456777655442 334345699999999999988765 112
Q ss_pred CCceEEEechhhHhhc-----------cchHHH-HHHHH----------------------HhCCCCce--EEEEeee-C
Q 029993 75 RNLVILVLDEADRLLD-----------MGFQKQ-ISYII----------------------SRLPKLRR--TGLFSAT-Q 117 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~-----------~~~~~~-l~~i~----------------------~~l~~~~q--~i~~SAT-~ 117 (184)
+++++|+||||.|++ .||.++ +..++ +.+++.+| .++|||| +
T Consensus 199 -~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~ 277 (1171)
T TIGR01054 199 -KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGR 277 (1171)
T ss_pred -CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCC
Confidence 899999999999998 577664 55543 34556666 6779999 5
Q ss_pred chHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCCcceeEEEEecC
Q 029993 118 TEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPLGLHLEVLRLNI 171 (184)
Q Consensus 118 ~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (184)
|..+. ..+++++..+.++.. .....++.|.|+.++.
T Consensus 278 p~~~~---~~l~r~ll~~~v~~~---------------~~~~r~I~~~~~~~~~ 313 (1171)
T TIGR01054 278 PRGKR---AKLFRELLGFEVGGG---------------SDTLRNVVDVYVEDED 313 (1171)
T ss_pred ccccH---HHHcccccceEecCc---------------cccccceEEEEEeccc
Confidence 65433 345677777887766 5567888899886654
No 44
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.76 E-value=3.3e-17 Score=153.41 Aligned_cols=134 Identities=18% Similarity=0.181 Sum_probs=104.3
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhh-----------cCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFIS-----------TLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM 69 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~ 69 (184)
++|||+|+|+|+.|+++.++.... ..+++++...+|+.+..++.+.+ +++|||||+||++|..++...
T Consensus 39 raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll-~~ppdILVTTPEsL~~LLtsk 117 (1490)
T PRK09751 39 RILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLT-RNPPDILITTPESLYLMLTSR 117 (1490)
T ss_pred EEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHh-cCCCCEEEecHHHHHHHHhhh
Confidence 479999999999999998875221 22478999999998877766555 568999999999999998762
Q ss_pred CCccCCCceEEEechhhHhhccchH----HHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCC-CCeEEE
Q 029993 70 DVLDFRNLVILVLDEADRLLDMGFQ----KQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR-NPVRIE 136 (184)
Q Consensus 70 ~~~~~~~l~~lVvDEaD~l~~~~~~----~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~-~~~~i~ 136 (184)
....+++++++|+||+|.|.+..++ ..+.++...++++.|+|++|||+++. ++++++... +|+.|.
T Consensus 118 ~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n~-eevA~~L~g~~pv~Iv 188 (1490)
T PRK09751 118 ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSA-SDVAAFLGGDRPVTVV 188 (1490)
T ss_pred hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCCH-HHHHHHhcCCCCEEEE
Confidence 3346999999999999999976444 45566666667789999999999874 677765543 466654
No 45
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=5.9e-19 Score=149.29 Aligned_cols=154 Identities=27% Similarity=0.310 Sum_probs=127.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhh--hcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCC--ccCCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFI--STLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV--LDFRN 76 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~--~~~~~ 76 (184)
+|+|+.||||||.|++..+.++. ... +.++..........+....+....+||+|+||.++...+.. +. +++++
T Consensus 211 ~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~-~~~~idl~~ 288 (593)
T KOG0344|consen 211 RALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGL-GKLNIDLSK 288 (593)
T ss_pred EEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcC-CCccchhhe
Confidence 48999999999999999999998 444 56666655554433333333346789999999999999987 55 78999
Q ss_pred ceEEEechhhHhhcc-chHHHHHHHHHhCCC-CceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhc
Q 029993 77 LVILVLDEADRLLDM-GFQKQISYIISRLPK-LRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLA 154 (184)
Q Consensus 77 l~~lVvDEaD~l~~~-~~~~~l~~i~~~l~~-~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 154 (184)
+.++|+||||.+++. .|.+++..|++.+.. +..+-+||||++..|++++...+.+++.+.++..
T Consensus 289 V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~-------------- 354 (593)
T KOG0344|consen 289 VEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLR-------------- 354 (593)
T ss_pred eeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecc--------------
Confidence 999999999999999 999999999988854 5678899999999999999999999999999888
Q ss_pred ccCCCCcceeEEEEecC
Q 029993 155 SSKTPLGLHLEVLRLNI 171 (184)
Q Consensus 155 ~~~~~~~l~~~~~~~~~ 171 (184)
+....++.|..+.|..
T Consensus 355 -~sa~~~V~QelvF~gs 370 (593)
T KOG0344|consen 355 -NSANETVDQELVFCGS 370 (593)
T ss_pred -hhHhhhhhhhheeeec
Confidence 4455666777777665
No 46
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.75 E-value=4.2e-17 Score=151.04 Aligned_cols=128 Identities=20% Similarity=0.246 Sum_probs=104.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHH---HHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
|++||+||++||.|+++.+.+..+.+ ++++..++|+.+..++... +.++++||+||||+.+ . +.+.++++
T Consensus 651 qvlvLvPT~eLA~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~-~~v~~~~L 723 (1147)
T PRK10689 651 QVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----Q-SDVKWKDL 723 (1147)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----h-CCCCHhhC
Confidence 68999999999999999999877766 6888888888776655443 3335799999999633 2 45678999
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccC
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (184)
+++|+||+|++ ++. ....++.++.++|+++||||+++++..++...++++..|.....
T Consensus 724 ~lLVIDEahrf---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~ 781 (1147)
T PRK10689 724 GLLIVDEEHRF---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781 (1147)
T ss_pred CEEEEechhhc---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC
Confidence 99999999996 222 24556788899999999999999999999999999998876544
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.75 E-value=4.6e-17 Score=148.08 Aligned_cols=128 Identities=23% Similarity=0.285 Sum_probs=102.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH---HHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
|++|++||++||.|+++.+.++.+.+ ++++..++|+....++ ...+.++++||+||||. ++ . +.+.++++
T Consensus 502 qvlvLvPT~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-ll----~-~~v~f~~L 574 (926)
T TIGR00580 502 QVAVLVPTTLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK-LL----Q-KDVKFKDL 574 (926)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH-Hh----h-CCCCcccC
Confidence 68999999999999999999988877 7899988887654433 33444457999999994 22 2 56789999
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccC
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (184)
+++|+||+|++ +......++.++++.|++++|||+.++...+....++++..|.....
T Consensus 575 ~llVIDEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~ 632 (926)
T TIGR00580 575 GLLIIDEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE 632 (926)
T ss_pred CEEEeeccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC
Confidence 99999999984 33445667778888999999999988888888778888888776543
No 48
>PRK00254 ski2-like helicase; Provisional
Probab=99.69 E-value=2e-16 Score=141.83 Aligned_cols=120 Identities=15% Similarity=0.220 Sum_probs=102.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+|+|+|+++||.|+++.+..+.+ + ++++..++|+.....+ .+ ..+||+|+||+++..++++ +...+++++++
T Consensus 70 ~~l~l~P~~aLa~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~~--~~--~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lv 142 (720)
T PRK00254 70 KAVYLVPLKALAEEKYREFKDWEK-L-GLRVAMTTGDYDSTDE--WL--GKYDIIIATAEKFDSLLRH-GSSWIKDVKLV 142 (720)
T ss_pred eEEEEeChHHHHHHHHHHHHHHhh-c-CCEEEEEeCCCCCchh--hh--ccCCEEEEcHHHHHHHHhC-CchhhhcCCEE
Confidence 379999999999999999998753 4 7899999998764322 22 5689999999999999887 65668999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHh
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~ 128 (184)
|+||+|.+.+.+++..+..++..++...|++++|||+++. ..++.|.
T Consensus 143 ViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~wl 189 (720)
T PRK00254 143 VADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAEWL 189 (720)
T ss_pred EEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHHHh
Confidence 9999999988889999999999999999999999999864 6677653
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.68 E-value=1.3e-15 Score=135.66 Aligned_cols=115 Identities=21% Similarity=0.342 Sum_probs=90.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH---HHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
+++|++||++||.|+++.++++.+.. ++++..++|+....+. ...+.++.++|+||||+++. ..+.++++
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~------~~v~~~~l 384 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ------DDVEFHNL 384 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc------ccchhccc
Confidence 58999999999999999999998877 7999999999875433 33444456999999998763 35678999
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHH
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~ 127 (184)
+++|+||+|++- ......+...+..+|++++|||..++...+...
T Consensus 385 ~lvVIDE~Hrfg-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~ 429 (681)
T PRK10917 385 GLVIIDEQHRFG-----VEQRLALREKGENPHVLVMTATPIPRTLAMTAY 429 (681)
T ss_pred ceEEEechhhhh-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHc
Confidence 999999999852 223334455566799999999998876665543
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.68 E-value=3.2e-16 Score=142.80 Aligned_cols=125 Identities=20% Similarity=0.232 Sum_probs=94.7
Q ss_pred CEEEEeccHHHHHHHHHHHHH-------hh----hcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhc
Q 029993 1 MGMIISPTRELSAQIYHVAQP-------FI----STLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM 69 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~-------l~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~ 69 (184)
++||++|||+||.|+++.+.. ++ ...+++++...+|+....++...+ .++|||+|+||++|..++..
T Consensus 86 ~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l-~~~p~IlVtTPE~L~~ll~~- 163 (876)
T PRK13767 86 YCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML-KKPPHILITTPESLAILLNS- 163 (876)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH-hCCCCEEEecHHHHHHHhcC-
Confidence 389999999999999886553 22 233478899999998876665555 56899999999999888865
Q ss_pred CCc--cCCCceEEEechhhHhhccchHHHHHHHH----HhCCCCceEEEEeeeCchHHHHHHHHh
Q 029993 70 DVL--DFRNLVILVLDEADRLLDMGFQKQISYII----SRLPKLRRTGLFSATQTEAVEELSKAG 128 (184)
Q Consensus 70 ~~~--~~~~l~~lVvDEaD~l~~~~~~~~l~~i~----~~l~~~~q~i~~SAT~~~~v~~~~~~~ 128 (184)
+.+ .+++++++|+||+|.+.+..++.++...+ ...++..|++++|||+++. ..++++.
T Consensus 164 ~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L 227 (876)
T PRK13767 164 PKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFL 227 (876)
T ss_pred hhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHh
Confidence 433 48999999999999999776665554443 3344678999999999863 4444443
No 51
>PRK02362 ski2-like helicase; Provisional
Probab=99.66 E-value=5.5e-16 Score=139.31 Aligned_cols=120 Identities=16% Similarity=0.244 Sum_probs=97.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++||.|+++.+.++.+ + ++++..++|+.....+ .+ ..+||+|+||+++..++++ +...+++++++
T Consensus 69 kal~i~P~raLa~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~~--~l--~~~~IiV~Tpek~~~llr~-~~~~l~~v~lv 141 (737)
T PRK02362 69 KALYIVPLRALASEKFEEFERFEE-L-GVRVGISTGDYDSRDE--WL--GDNDIIVATSEKVDSLLRN-GAPWLDDITCV 141 (737)
T ss_pred cEEEEeChHHHHHHHHHHHHHhhc-C-CCEEEEEeCCcCcccc--cc--CCCCEEEECHHHHHHHHhc-ChhhhhhcCEE
Confidence 389999999999999999998754 3 7899999988754332 22 4689999999999999887 55568899999
Q ss_pred EechhhHhhccchHHHHHHHHHhC---CCCceEEEEeeeCchHHHHHHHHh
Q 029993 81 VLDEADRLLDMGFQKQISYIISRL---PKLRRTGLFSATQTEAVEELSKAG 128 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l---~~~~q~i~~SAT~~~~v~~~~~~~ 128 (184)
|+||+|.+.+.+++..+..++.++ +.+.|++++|||+++. ..++.|.
T Consensus 142 ViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl 191 (737)
T PRK02362 142 VVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWL 191 (737)
T ss_pred EEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHh
Confidence 999999998888888887776555 5678999999999863 5566554
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.63 E-value=3.5e-15 Score=131.95 Aligned_cols=125 Identities=14% Similarity=0.122 Sum_probs=94.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhc--CCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 1 MGMIISPTRELSAQIYHVAQPFIST--LPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+++|++||||||.|+...+.+..++ +++..+...+||... ...... ..+.+|+|+||+. ....+++++
T Consensus 224 ~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~-~k~~~Ilv~T~~L--------~l~~L~~v~ 293 (675)
T PHA02653 224 PIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTN-PKPYGLVFSTHKL--------TLNKLFDYG 293 (675)
T ss_pred EEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcc-cCCCCEEEEeCcc--------cccccccCC
Confidence 4799999999999999998876654 346778888998763 211211 2478999999852 123578899
Q ss_pred EEEechhhHhhccchHHHHHHHHHhC-CCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEc
Q 029993 79 ILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~~~l~~i~~~l-~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (184)
++|+||||.+...+ +.+..+++.. ++.+|+++||||++++++.+ ..|+++|..+.+.
T Consensus 294 ~VVIDEaHEr~~~~--DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~ 351 (675)
T PHA02653 294 TVIIDEVHEHDQIG--DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIP 351 (675)
T ss_pred EEEccccccCccch--hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeC
Confidence 99999999987654 5555666554 34569999999999998887 5789999998875
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.62 E-value=5.4e-15 Score=130.82 Aligned_cols=114 Identities=21% Similarity=0.353 Sum_probs=86.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH---HHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
+++|++||++||.|+++.++++.+.+ ++++..++|+....+. ...+.++.++|+||||+++. ..+.++++
T Consensus 286 qvlilaPT~~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~------~~~~~~~l 358 (630)
T TIGR00643 286 QVALMAPTEILAEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ------EKVEFKRL 358 (630)
T ss_pred cEEEECCHHHHHHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh------cccccccc
Confidence 68999999999999999999998877 7999999998775543 34444567899999998764 34678999
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCC--CCceEEEEeeeCchHHHHHH
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSATQTEAVEELS 125 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~--~~~q~i~~SAT~~~~v~~~~ 125 (184)
.++|+||+|++- ......+ ..... ..+|++++|||..++...+.
T Consensus 359 ~lvVIDEaH~fg-~~qr~~l---~~~~~~~~~~~~l~~SATp~prtl~l~ 404 (630)
T TIGR00643 359 ALVIIDEQHRFG-VEQRKKL---REKGQGGFTPHVLVMSATPIPRTLALT 404 (630)
T ss_pred ceEEEechhhcc-HHHHHHH---HHhcccCCCCCEEEEeCCCCcHHHHHH
Confidence 999999999852 2222222 22222 26899999999877655443
No 54
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.59 E-value=3.7e-14 Score=127.98 Aligned_cols=126 Identities=17% Similarity=0.097 Sum_probs=94.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+++|+.|+|++|.|+.+.+.+..+...+..+...+++.+. .+.+.+|+|+|||+|++++.. ...+++++++
T Consensus 47 ~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~-------~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~V 117 (819)
T TIGR01970 47 KIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENK-------VSRRTRLEVVTEGILTRMIQD--DPELDGVGAL 117 (819)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccc-------cCCCCcEEEECCcHHHHHHhh--CcccccCCEE
Confidence 4799999999999999988654332224556555554331 135689999999999999876 4579999999
Q ss_pred Eechhh-HhhccchHH-HHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEc
Q 029993 81 VLDEAD-RLLDMGFQK-QISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138 (184)
Q Consensus 81 VvDEaD-~l~~~~~~~-~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (184)
|+||+| ++++.++.- .+..+.+.++++.|++++|||++.+. ...|+.++..|.+.
T Consensus 118 IiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~ 174 (819)
T TIGR01970 118 IFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESE 174 (819)
T ss_pred EEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEec
Confidence 999999 578776644 34566677888999999999999764 46778776666543
No 55
>PRK01172 ski2-like helicase; Provisional
Probab=99.59 E-value=1.2e-14 Score=129.62 Aligned_cols=120 Identities=21% Similarity=0.236 Sum_probs=95.5
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+++++|+++||.|+++.+.++.. . +.++...+|+...... .+ ..+||+|+||+++..++.+ ....+++++++
T Consensus 67 k~v~i~P~raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~--~~--~~~dIiv~Tpek~~~l~~~-~~~~l~~v~lv 139 (674)
T PRK01172 67 KSIYIVPLRSLAMEKYEELSRLRS-L-GMRVKISIGDYDDPPD--FI--KRYDVVILTSEKADSLIHH-DPYIINDVGLI 139 (674)
T ss_pred cEEEEechHHHHHHHHHHHHHHhh-c-CCeEEEEeCCCCCChh--hh--ccCCEEEECHHHHHHHHhC-ChhHHhhcCEE
Confidence 379999999999999999998753 3 7888888887654322 22 4689999999999998877 55568999999
Q ss_pred EechhhHhhccchHHHHHHHHH---hCCCCceEEEEeeeCchHHHHHHHHh
Q 029993 81 VLDEADRLLDMGFQKQISYIIS---RLPKLRRTGLFSATQTEAVEELSKAG 128 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~---~l~~~~q~i~~SAT~~~~v~~~~~~~ 128 (184)
|+||||.+.+.+++..+..++. .++++.|++++|||+++. ..+++|+
T Consensus 140 ViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~wl 189 (674)
T PRK01172 140 VADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQWL 189 (674)
T ss_pred EEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHHh
Confidence 9999999987777777766654 445778999999999864 6677654
No 56
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.58 E-value=4.1e-14 Score=127.79 Aligned_cols=126 Identities=14% Similarity=0.109 Sum_probs=94.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+++|+.|||++|.|+.+.+.+..+...+..+...+++.+.. +...+|+|+|||+|++++.. ...+++++++
T Consensus 50 ~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~-------~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~I 120 (812)
T PRK11664 50 KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV-------GPNTRLEVVTEGILTRMIQR--DPELSGVGLV 120 (812)
T ss_pred eEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc-------CCCCcEEEEChhHHHHHHhh--CCCcCcCcEE
Confidence 47999999999999999886543332366777777665421 24568999999999999875 4579999999
Q ss_pred EechhhH-hhccch-HHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEc
Q 029993 81 VLDEADR-LLDMGF-QKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138 (184)
Q Consensus 81 VvDEaD~-l~~~~~-~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (184)
|+||+|. .++.++ ...+..+.+.++++.|++++|||++.+. ...|++++..|.+.
T Consensus 121 IlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~~---l~~~~~~~~~I~~~ 177 (812)
T PRK11664 121 ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDR---LQQLLPDAPVIVSE 177 (812)
T ss_pred EEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHHH---HHHhcCCCCEEEec
Confidence 9999997 455443 3344567778888999999999998752 35678777666543
No 57
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.56 E-value=3.4e-13 Score=100.90 Aligned_cols=136 Identities=37% Similarity=0.572 Sum_probs=111.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
++|++||+.++.|+...+..+.... ........++.........+.+...+++++||+.+...+.. ......++.++|
T Consensus 57 ~l~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~-~~~~~~~~~~iI 134 (201)
T smart00487 57 VLVLVPTRELAEQWAEELKKLGPSL-GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEN-DLLELSNVDLVI 134 (201)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccC-CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHc-CCcCHhHCCEEE
Confidence 6899999999999999999887654 22444555555545555555433349999999999999887 556788899999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEcc
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRA 139 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~ 139 (184)
+||+|.+....+...+..+++.+++..+++++|||.++.+......++.++..+....
T Consensus 135 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 135 LDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred EECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 9999998875788999999999988899999999999999999999999888777654
No 58
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.53 E-value=2e-13 Score=123.65 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=101.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCC-CceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcC---CccCCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLP-DVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD---VLDFRN 76 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~---~~~~~~ 76 (184)
.||+|.||++||+.+.+.++++....+ +++.....|+... .+.+.+..++||||++||.+|..++-... ...+++
T Consensus 117 ~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~-~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~ 195 (851)
T COG1205 117 RALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPP-EERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRN 195 (851)
T ss_pred cEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCCh-HHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhc
Confidence 489999999999999999999999886 4666665555554 44445557899999999999988554311 123788
Q ss_pred ceEEEechhhHhhccchHHHHHHHHHhC-------CCCceEEEEeeeCchHHHHHHHHhCCCCeEEE
Q 029993 77 LVILVLDEADRLLDMGFQKQISYIISRL-------PKLRRTGLFSATQTEAVEELSKAGLRNPVRIE 136 (184)
Q Consensus 77 l~~lVvDEaD~l~~~~~~~~l~~i~~~l-------~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~ 136 (184)
++++|+||+|..-+ .|+.++..+++++ +...|+++.|||+.+. .+++..+.+......
T Consensus 196 Lk~lVvDElHtYrG-v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~ 260 (851)
T COG1205 196 LKYLVVDELHTYRG-VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVP 260 (851)
T ss_pred CcEEEEecceeccc-cchhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceee
Confidence 99999999998654 3777777666666 3578999999999888 667777777666653
No 59
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=1.7e-13 Score=117.52 Aligned_cols=131 Identities=17% Similarity=0.210 Sum_probs=90.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCc-cCCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVL-DFRN 76 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~-~~~~ 76 (184)
.+||++||+||+.|+...+..+ ++.+..+.++....+.. ..+..+.++|+++||+++.........+ ...+
T Consensus 53 ~~lVi~P~~~L~~dq~~~l~~~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~ 127 (470)
T TIGR00614 53 ITLVISPLISLMEDQVLQLKAS-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKG 127 (470)
T ss_pred cEEEEecHHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCC
Confidence 3799999999999998887754 56777777766544322 2333456899999999975422110122 5688
Q ss_pred ceEEEechhhHhhccc--hHHHHHHH--HHhCCCCceEEEEeeeCchHHHHHHHHhC--CCCeEEE
Q 029993 77 LVILVLDEADRLLDMG--FQKQISYI--ISRLPKLRRTGLFSATQTEAVEELSKAGL--RNPVRIE 136 (184)
Q Consensus 77 l~~lVvDEaD~l~~~~--~~~~l~~i--~~~l~~~~q~i~~SAT~~~~v~~~~~~~~--~~~~~i~ 136 (184)
+.++|+||||.+.+.+ |.+....+ +....++.|++++|||+++++..-....+ .+|..+.
T Consensus 128 i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~ 193 (470)
T TIGR00614 128 ITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFC 193 (470)
T ss_pred cCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEe
Confidence 9999999999997643 66666553 23333568899999999998876555543 4565544
No 60
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=1e-13 Score=124.38 Aligned_cols=84 Identities=15% Similarity=0.290 Sum_probs=74.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhcCCccCC-----
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVLDFR----- 75 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~~~~~~~----- 75 (184)
++||+||+|||.|+.+++..+.+++ ++++..++||.+..++.... +|||+||||++| .++++. +.+.++
T Consensus 138 v~IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y---~~DIVygTPgRLgfDyLrd-~~~~~~~~~~v 212 (970)
T PRK12899 138 VHLVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY---QCDVVYGTASEFGFDYLRD-NSIATRKEEQV 212 (970)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc---CCCEEEECCChhHHHHhhC-CCCCcCHHHhh
Confidence 6899999999999999999999888 89999999999988776443 699999999999 999998 666665
Q ss_pred --CceEEEechhhHhhc
Q 029993 76 --NLVILVLDEADRLLD 90 (184)
Q Consensus 76 --~l~~lVvDEaD~l~~ 90 (184)
.++++|+||||.|+-
T Consensus 213 qr~~~~~IIDEADsmLi 229 (970)
T PRK12899 213 GRGFYFAIIDEVDSILI 229 (970)
T ss_pred cccccEEEEechhhhhh
Confidence 558999999999974
No 61
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.47 E-value=1.9e-12 Score=118.51 Aligned_cols=125 Identities=21% Similarity=0.243 Sum_probs=89.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHH-----cCCcEeeechHHHHH---HHHhcCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE-----EGANLLIGTPGRLYD---IMERMDVL 72 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~IlV~TP~~l~~---~~~~~~~~ 72 (184)
.+|||+|+++|+.++...+... ++++..+.++....++...+.. ++++||++||++|.. ++.....+
T Consensus 502 iTLVISPLiSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L 576 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL 576 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh
Confidence 4799999999998554444432 6888899998887666554432 578999999999863 22221112
Q ss_pred -cCCCceEEEechhhHhhccc--hHHHHHHH--HHhCCCCceEEEEeeeCchHHHHHHHHhCC
Q 029993 73 -DFRNLVILVLDEADRLLDMG--FQKQISYI--ISRLPKLRRTGLFSATQTEAVEELSKAGLR 130 (184)
Q Consensus 73 -~~~~l~~lVvDEaD~l~~~~--~~~~l~~i--~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~ 130 (184)
....+.+|||||||.+.+.| |++....+ ++...+..|++++|||.++.+...+...+.
T Consensus 577 ~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~ 639 (1195)
T PLN03137 577 NSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALG 639 (1195)
T ss_pred hhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcC
Confidence 23558899999999998754 78877653 444455689999999999998875555443
No 62
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.46 E-value=2.9e-13 Score=120.82 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=104.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCc--cCCCce
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL--DFRNLV 78 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~--~~~~l~ 78 (184)
.||+|+|-|+|+..+..-++.++... ++.+..-+|+....+..+.. .++|||+|+||+.|.-++.. +.+ .|++++
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~-~~PPdILiTTPEsL~lll~~-~~~r~~l~~vr 151 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLREL-GIEVAVRHGDTPQSEKQKML-KNPPHILITTPESLAILLNS-PKFRELLRDVR 151 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHc-CCccceecCCCChHHhhhcc-CCCCcEEEeChhHHHHHhcC-HHHHHHhcCCc
Confidence 38999999999999999999999988 99998888888776666665 68999999999999999876 444 499999
Q ss_pred EEEechhhHhhccchHHHHHHHHHhC---CCCceEEEEeeeCchHHHHHHHHhCCC
Q 029993 79 ILVLDEADRLLDMGFQKQISYIISRL---PKLRRTGLFSATQTEAVEELSKAGLRN 131 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~~~l~~i~~~l---~~~~q~i~~SAT~~~~v~~~~~~~~~~ 131 (184)
++|+||.|.+.+...+.++.--+.++ ..+.|.|.+|||..+. +..+++....
T Consensus 152 ~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~varfL~g~ 206 (814)
T COG1201 152 YVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPP-EEVAKFLVGF 206 (814)
T ss_pred EEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccCCH-HHHHHHhcCC
Confidence 99999999999876666655444333 2278999999999855 6667766665
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.46 E-value=2.5e-13 Score=117.37 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=80.3
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||||||+||+.|+.+.+.+++.. +...+..+.+|.... .+++|+|+||+++.+... ..++++.++
T Consensus 160 ~vLilvpt~eL~~Q~~~~l~~~~~~-~~~~~~~i~~g~~~~--------~~~~I~VaT~qsl~~~~~----~~~~~~~~i 226 (501)
T PHA02558 160 KVLIIVPTTSLVTQMIDDFVDYRLF-PREAMHKIYSGTAKD--------TDAPIVVSTWQSAVKQPK----EWFDQFGMV 226 (501)
T ss_pred eEEEEECcHHHHHHHHHHHHHhccc-cccceeEEecCcccC--------CCCCEEEeeHHHHhhchh----hhccccCEE
Confidence 3799999999999999999998643 345555666665421 357999999999876432 246889999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchH
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~ 120 (184)
|+||||++.+. .+..+++.+++.+|+++||||++..
T Consensus 227 IvDEaH~~~~~----~~~~il~~~~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 227 IVDECHLFTGK----SLTSIITKLDNCKFKFGLTGSLRDG 262 (501)
T ss_pred EEEchhcccch----hHHHHHHhhhccceEEEEeccCCCc
Confidence 99999998754 4566777787788999999999753
No 64
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.45 E-value=2.8e-13 Score=121.43 Aligned_cols=124 Identities=20% Similarity=0.266 Sum_probs=101.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
++++||+|.||.++++.+.++.. + ++++...+|+.....+ .+ .+++|+|+||+++..+.++ ...-...++.+|
T Consensus 79 ~vYivPlkALa~Ek~~~~~~~~~-~-GirV~~~TgD~~~~~~--~l--~~~~ViVtT~EK~Dsl~R~-~~~~~~~V~lvV 151 (766)
T COG1204 79 VVYIVPLKALAEEKYEEFSRLEE-L-GIRVGISTGDYDLDDE--RL--ARYDVIVTTPEKLDSLTRK-RPSWIEEVDLVV 151 (766)
T ss_pred EEEEeChHHHHHHHHHHhhhHHh-c-CCEEEEecCCcccchh--hh--ccCCEEEEchHHhhHhhhc-CcchhhcccEEE
Confidence 79999999999999999997644 4 8999999999875442 23 5789999999999999988 555678999999
Q ss_pred echhhHhhccchHHHHHHHHHhCCC---CceEEEEeeeCchHHHHHHHHhCCCCe
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPK---LRRTGLFSATQTEAVEELSKAGLRNPV 133 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~---~~q~i~~SAT~~~~v~~~~~~~~~~~~ 133 (184)
+||+|.+-+...+..+..|+.+++. ..|++.+|||+|+- .+++.|.--++.
T Consensus 152 iDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~ 205 (766)
T COG1204 152 IDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLV 205 (766)
T ss_pred EeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCccc
Confidence 9999988777677777777766654 47999999999976 778887655544
No 65
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.44 E-value=2.6e-12 Score=108.05 Aligned_cols=134 Identities=17% Similarity=0.234 Sum_probs=103.1
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+|+++||+.|+.|....|.+..+ .|+-.++.++|....++....+ ...+|+|+||..+.+-+.. +.+|++++.++|
T Consensus 61 vlfLAPTKPLV~Qh~~~~~~v~~-ip~~~i~~ltGev~p~~R~~~w--~~~kVfvaTPQvveNDl~~-Grid~~dv~~li 136 (542)
T COG1111 61 VLFLAPTKPLVLQHAEFCRKVTG-IPEDEIAALTGEVRPEEREELW--AKKKVFVATPQVVENDLKA-GRIDLDDVSLLI 136 (542)
T ss_pred EEEecCCchHHHHHHHHHHHHhC-CChhheeeecCCCChHHHHHHH--hhCCEEEeccHHHHhHHhc-CccChHHceEEE
Confidence 79999999999999999999974 5678889999988876665555 4579999999999998888 999999999999
Q ss_pred echhhHhhccc-hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCC-CCeEEEEccC
Q 029993 82 LDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR-NPVRIEVRAE 140 (184)
Q Consensus 82 vDEaD~l~~~~-~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~-~~~~i~~~~~ 140 (184)
+||||+-.++. |..-....++ -.+++.++.+|||...+.+......-+ .-..|.+..+
T Consensus 137 fDEAHRAvGnyAYv~Va~~y~~-~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE 196 (542)
T COG1111 137 FDEAHRAVGNYAYVFVAKEYLR-SAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTE 196 (542)
T ss_pred echhhhccCcchHHHHHHHHHH-hccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecC
Confidence 99999987764 4444444444 446789999999998775554443211 2344444444
No 66
>PRK13766 Hef nuclease; Provisional
Probab=99.35 E-value=1.7e-11 Score=111.03 Aligned_cols=115 Identities=19% Similarity=0.249 Sum_probs=89.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+|||+||++|+.|+.+.++++.+ .++.++..+.|+..... ...++ .+++|+|+||+.+...+.. +.+++.++.++|
T Consensus 61 vLvl~Pt~~L~~Q~~~~~~~~~~-~~~~~v~~~~g~~~~~~-r~~~~-~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liV 136 (773)
T PRK13766 61 VLILAPTKPLVEQHAEFFRKFLN-IPEEKIVVFTGEVSPEK-RAELW-EKAKVIVATPQVIENDLIA-GRISLEDVSLLI 136 (773)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhC-CCCceEEEEeCCCCHHH-HHHHH-hCCCEEEECHHHHHHHHHc-CCCChhhCcEEE
Confidence 79999999999999999998764 23457777887766543 33333 4689999999999887776 788899999999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchH
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~ 120 (184)
+||||++.+......+........+..+++++|||....
T Consensus 137 vDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~ 175 (773)
T PRK13766 137 FDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD 175 (773)
T ss_pred EECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC
Confidence 999999876644455555555556678899999997533
No 67
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=4.1e-12 Score=114.10 Aligned_cols=85 Identities=18% Similarity=0.257 Sum_probs=72.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhcCCccC-----
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVLDF----- 74 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~~~~~~----- 74 (184)
.++|++||++||.|.++++..+..++ ++++..++||.+..++... ..+||++|||++| .++++..-.+++
T Consensus 125 ~V~VvTpn~yLA~qd~e~m~~l~~~l-GLtv~~i~gg~~~~~r~~~---y~~dIvygT~grlgfDyLrd~~~~~~~~~v~ 200 (896)
T PRK13104 125 GVHIVTVNDYLAKRDSQWMKPIYEFL-GLTVGVIYPDMSHKEKQEA---YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQ 200 (896)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCCCHHHHHHH---hCCCEEEECChhhhHHHHhcCCccchHhhhc
Confidence 47899999999999999999999988 8999999999876655333 3689999999999 999987324555
Q ss_pred CCceEEEechhhHhh
Q 029993 75 RNLVILVLDEADRLL 89 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~ 89 (184)
+.+.++|+||||.|+
T Consensus 201 r~l~~~IvDEaDsiL 215 (896)
T PRK13104 201 RELNFAIVDEVDSIL 215 (896)
T ss_pred cccceEEeccHhhhh
Confidence 699999999999986
No 68
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.35 E-value=3.3e-12 Score=105.81 Aligned_cols=126 Identities=16% Similarity=0.067 Sum_probs=83.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchH------------HHHHHHHH-----cCCcEeeechHHHH
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVK------------ADVKKIEE-----EGANLLIGTPGRLY 63 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~------------~~~~~l~~-----~~~~IlV~TP~~l~ 63 (184)
.+++++|+++|+.|+++.+..+.+. .+...+|+.... ........ -.++|+|+||+.+.
T Consensus 31 ~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~ 106 (358)
T TIGR01587 31 RVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVL 106 (358)
T ss_pred eEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHH
Confidence 3789999999999999999997532 233344432210 00000000 13689999999998
Q ss_pred HHHHhc-CC--ccCC--CceEEEechhhHhhccchHHHHHHHHHhCC-CCceEEEEeeeCchHHHHHHHHhCCC
Q 029993 64 DIMERM-DV--LDFR--NLVILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRN 131 (184)
Q Consensus 64 ~~~~~~-~~--~~~~--~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~-~~~q~i~~SAT~~~~v~~~~~~~~~~ 131 (184)
..+... +. ..+. ...++|+||+|.+.+.++.. +..+++.++ .+.|++++|||+|+.+.+++..+...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~ 179 (358)
T TIGR01587 107 KSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYV 179 (358)
T ss_pred HHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCc
Confidence 876541 11 1122 23789999999998764433 666666664 46899999999998888887776543
No 69
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.35 E-value=3.2e-12 Score=113.22 Aligned_cols=85 Identities=15% Similarity=0.197 Sum_probs=73.5
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhcC------Ccc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD------VLD 73 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~~------~~~ 73 (184)
+++|++||++||.|.++.+.++.+++ ++++..++|+.+..++... ..+||++|||++| .++++. + .+.
T Consensus 99 ~V~VvTpt~~LA~qdae~~~~l~~~L-GLsv~~i~g~~~~~~r~~~---y~~dIvyGT~~rlgfDyLrd-~~~~~~~~~~ 173 (745)
T TIGR00963 99 GVHVVTVNDYLAQRDAEWMGQVYRFL-GLSVGLILSGMSPEERREA---YACDITYGTNNELGFDYLRD-NMAHSKEEKV 173 (745)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccC-CCeEEEEeCCCCHHHHHHh---cCCCEEEECCCchhhHHHhc-ccccchhhhh
Confidence 58899999999999999999999988 8999999999886544332 4689999999999 888886 4 356
Q ss_pred CCCceEEEechhhHhhc
Q 029993 74 FRNLVILVLDEADRLLD 90 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~ 90 (184)
++++.++|+||+|.|+-
T Consensus 174 ~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 174 QRPFHFAIIDEVDSILI 190 (745)
T ss_pred ccccceeEeecHHHHhH
Confidence 89999999999999875
No 70
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.32 E-value=2.7e-11 Score=106.70 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=90.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
++|++|+++|+.|....++.+ ++.+..+.++.+..+.. ..+..+.++|+++||+++...... ..+...++.
T Consensus 56 ~lVisPl~sL~~dq~~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~ 129 (591)
T TIGR01389 56 TVVISPLISLMKDQVDQLRAA-----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIA 129 (591)
T ss_pred EEEEcCCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCC
Confidence 689999999999998888775 56777777776655433 234456789999999999754333 345667899
Q ss_pred EEEechhhHhhc--cchHHHHHHH---HHhCCCCceEEEEeeeCchHHHHHHHHhCC
Q 029993 79 ILVLDEADRLLD--MGFQKQISYI---ISRLPKLRRTGLFSATQTEAVEELSKAGLR 130 (184)
Q Consensus 79 ~lVvDEaD~l~~--~~~~~~l~~i---~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~ 130 (184)
++|+||||.+.+ .+|.+.+..+ ...++. .+++++|||.++.+..-...+++
T Consensus 130 ~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~ 185 (591)
T TIGR01389 130 LVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQ-VPRIALTATADAETRQDIRELLR 185 (591)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcC
Confidence 999999999876 3477666554 445554 45999999999998876666654
No 71
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.32 E-value=7.1e-11 Score=83.40 Aligned_cols=112 Identities=38% Similarity=0.588 Sum_probs=84.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
++|++|++.++.|..+.+...... +..+..+.++.......... ..+++|+++|++.+...... .........++|
T Consensus 33 ~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~t~~~~~~~~~~-~~~~~~~~~~ii 108 (144)
T cd00046 33 VLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLL-SGKTDIVVGTPGRLLDELER-LKLSLKKLDLLI 108 (144)
T ss_pred EEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHh-cCCCCEEEECcHHHHHHHHc-CCcchhcCCEEE
Confidence 689999999999999999987653 46777777766554444333 46899999999999888776 444456788999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~ 117 (184)
+||+|.+....+...............+++++|||+
T Consensus 109 iDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 109 LDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred EeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 999999877654444333444456778999999995
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.31 E-value=1.3e-10 Score=96.49 Aligned_cols=138 Identities=13% Similarity=0.070 Sum_probs=91.8
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcC---CCceEEEEECCcchH--HH-----------------HHHHHHcCCcEeeech
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTL---PDVKSMLLVGGVEVK--AD-----------------VKKIEEEGANLLIGTP 59 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~---~~~~~~~~~~~~~~~--~~-----------------~~~l~~~~~~IlV~TP 59 (184)
+++++|+++|+.|+++.+.++...+ .+..+..+.|....+ .. .......+|+|+++||
T Consensus 42 ~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p 121 (357)
T TIGR03158 42 TIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNP 121 (357)
T ss_pred EEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecH
Confidence 6899999999999999999987543 245565555542111 00 1111234799999999
Q ss_pred HHHHHHHHhc---CCc----cCCCceEEEechhhHhhccc-----hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHH
Q 029993 60 GRLYDIMERM---DVL----DFRNLVILVLDEADRLLDMG-----FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (184)
Q Consensus 60 ~~l~~~~~~~---~~~----~~~~l~~lVvDEaD~l~~~~-----~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~ 127 (184)
+.+..++... +.. .+.++.++|+||+|.+-... +.-....+++......+++++|||+++.+......
T Consensus 122 ~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~ 201 (357)
T TIGR03158 122 DIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQN 201 (357)
T ss_pred HHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHh
Confidence 9998776531 111 25789999999999865321 11234445555555689999999999998888776
Q ss_pred h--CCCCeEEEEcc
Q 029993 128 G--LRNPVRIEVRA 139 (184)
Q Consensus 128 ~--~~~~~~i~~~~ 139 (184)
. +++|.....+.
T Consensus 202 ~~~~~~~~~~v~g~ 215 (357)
T TIGR03158 202 AKQAGVKIAPIDGE 215 (357)
T ss_pred ccccCceeeeecCc
Confidence 5 56665444333
No 73
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.31 E-value=2.4e-11 Score=107.33 Aligned_cols=129 Identities=18% Similarity=0.145 Sum_probs=89.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+||++|+++|+.|+...+..+ ++.+..+.++...++.. ..+..+..+++++||+++...... ..+...++
T Consensus 67 ~tlVisPl~sL~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l 140 (607)
T PRK11057 67 LTLVVSPLISLMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNP 140 (607)
T ss_pred CEEEEecHHHHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCC
Confidence 3789999999999998888765 46666666666554432 233345689999999998732211 23445678
Q ss_pred eEEEechhhHhhccc--hHHHHHHH---HHhCCCCceEEEEeeeCchHHHHHHHHh--CCCCeEEE
Q 029993 78 VILVLDEADRLLDMG--FQKQISYI---ISRLPKLRRTGLFSATQTEAVEELSKAG--LRNPVRIE 136 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~--~~~~l~~i---~~~l~~~~q~i~~SAT~~~~v~~~~~~~--~~~~~~i~ 136 (184)
.++|+||||.+.+.+ |.+.+..+ .+.+ +..+++++|||.++.+..-.... +.+|....
T Consensus 141 ~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~ 205 (607)
T PRK11057 141 ALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI 205 (607)
T ss_pred CEEEEeCccccccccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE
Confidence 999999999998643 66555443 3444 46899999999998876533333 45665443
No 74
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.26 E-value=6.7e-11 Score=105.61 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=81.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
++||++||++|+.|+.+.+++. + +.++..++|+.+..+... .+.++.++|+||||+.+. ..++++
T Consensus 192 ~vLvLvPt~~L~~Q~~~~l~~~---f-g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l 259 (679)
T PRK05580 192 QALVLVPEIALTPQMLARFRAR---F-GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNL 259 (679)
T ss_pred eEEEEeCcHHHHHHHHHHHHHH---h-CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCC
Confidence 5899999999999999988874 3 567888998877654433 233457899999998653 347889
Q ss_pred eEEEechhhHhhccc---hHHHHHH--HHHhCCCCceEEEEeeeCchHHHHHH
Q 029993 78 VILVLDEADRLLDMG---FQKQISY--IISRLPKLRRTGLFSATQTEAVEELS 125 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~---~~~~l~~--i~~~l~~~~q~i~~SAT~~~~v~~~~ 125 (184)
.++|+||+|...-.. ..-+.+. +.+....+.|++++|||.+.+....+
T Consensus 260 ~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~~s~~~~ 312 (679)
T PRK05580 260 GLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSLESLANA 312 (679)
T ss_pred CEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCHHHHHHH
Confidence 999999999753211 1111222 34444577999999999887766554
No 75
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.24 E-value=7.3e-11 Score=107.74 Aligned_cols=128 Identities=24% Similarity=0.301 Sum_probs=108.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
|+.|||||--||+|.++.|++-.+.+ ++++..++.-.+.+++. ..+.++..||||||. +|+. +.+.|++|
T Consensus 645 QVAvLVPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-rLL~-----kdv~FkdL 717 (1139)
T COG1197 645 QVAVLVPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-RLLS-----KDVKFKDL 717 (1139)
T ss_pred eEEEEcccHHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-HhhC-----CCcEEecC
Confidence 78999999999999999999988888 79999998877666554 455668899999999 4443 78899999
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccC
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (184)
..+|+||-++ |+-.-++-++.++.+..++-+|||.-|+...++-..++|-..|...+.
T Consensus 718 GLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~ 775 (1139)
T COG1197 718 GLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE 775 (1139)
T ss_pred CeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC
Confidence 9999999998 444445556677788999999999999999999999999888887776
No 76
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.22 E-value=3.7e-11 Score=107.65 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=70.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhc-----CCccC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~-----~~~~~ 74 (184)
+|+|++||++||.|.++.+..+..++ ++++..+.|+.+..++.+.. .++||++|||+++ .+++... .....
T Consensus 121 ~v~VvTpt~~LA~qd~e~~~~l~~~l-Gl~v~~i~g~~~~~~~r~~~--y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~ 197 (790)
T PRK09200 121 GVHLITVNDYLAKRDAEEMGQVYEFL-GLTVGLNFSDIDDASEKKAI--YEADIIYTTNSELGFDYLRDNLADSKEDKVQ 197 (790)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCcHHHHHHh--cCCCEEEECCccccchhHHhccccchhhhcc
Confidence 58999999999999999999999988 99999999998844444443 5799999999999 5655541 11346
Q ss_pred CCceEEEechhhHhh
Q 029993 75 RNLVILVLDEADRLL 89 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~ 89 (184)
+.+.++|+||||.|+
T Consensus 198 r~~~~~IvDEaDsiL 212 (790)
T PRK09200 198 RPLNYAIIDEIDSIL 212 (790)
T ss_pred cccceEEEeccccce
Confidence 889999999999986
No 77
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.19 E-value=1.2e-10 Score=108.49 Aligned_cols=113 Identities=21% Similarity=0.231 Sum_probs=79.4
Q ss_pred cHHHHHHHHHHHHH-hhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhh
Q 029993 8 TRELSAQIYHVAQP-FISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEAD 86 (184)
Q Consensus 8 treLa~Qi~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD 86 (184)
+++||.|+.+.+.. ++... +.++ ... .+. +.+++|+++|||+|++.+.. + ..+++++++|+||||
T Consensus 131 ArsLA~RVA~El~~~lG~~V-GY~v----rf~---~~~----s~~t~I~v~TpG~LL~~l~~-d-~~Ls~~~~IIIDEAH 196 (1294)
T PRK11131 131 ARTVANRIAEELETELGGCV-GYKV----RFN---DQV----SDNTMVKLMTDGILLAEIQQ-D-RLLMQYDTIIIDEAH 196 (1294)
T ss_pred HHHHHHHHHHHHhhhhccee-ceee----cCc---ccc----CCCCCEEEEChHHHHHHHhc-C-CccccCcEEEecCcc
Confidence 68999999998875 33221 2221 111 111 35789999999999999876 4 459999999999999
Q ss_pred -HhhccchHHH-HHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEc
Q 029993 87 -RLLDMGFQKQ-ISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138 (184)
Q Consensus 87 -~l~~~~~~~~-l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (184)
++++.+|... +..++... ++.|++++|||++. +.+.+.|.+.|+ |.+.
T Consensus 197 ERsLn~DfLLg~Lk~lL~~r-pdlKvILmSATid~--e~fs~~F~~apv-I~V~ 246 (1294)
T PRK11131 197 ERSLNIDFILGYLKELLPRR-PDLKVIITSATIDP--ERFSRHFNNAPI-IEVS 246 (1294)
T ss_pred ccccccchHHHHHHHhhhcC-CCceEEEeeCCCCH--HHHHHHcCCCCE-EEEc
Confidence 5888887643 44444332 46899999999975 467777666664 5543
No 78
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.18 E-value=1e-10 Score=104.21 Aligned_cols=88 Identities=18% Similarity=0.173 Sum_probs=68.5
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcc---hHHHHHHHHHcCCcEeeechHHH-HHHHHhc-----CC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVE---VKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DV 71 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~-----~~ 71 (184)
.++|++||++||.|..+++..+.+++ ++++..++++.. ...+.+.. ..+|||++|||++| .+++... ..
T Consensus 113 ~V~VVTpn~yLA~Rdae~m~~l~~~L-GLsv~~~~~~s~~~~~~~~~rr~-~y~~dIvygTp~~LgfDyLrD~l~~~~~~ 190 (762)
T TIGR03714 113 GAMLVTTNDYLAKRDAEEMGPVYEWL-GLTVSLGVVDDPDEEYDANEKRK-IYNSDIVYTTNSALGFDYLIDNLASNKEG 190 (762)
T ss_pred ceEEeCCCHHHHHHHHHHHHHHHhhc-CCcEEEEECCCCccccCHHHHHH-hCCCCEEEECchhhhhhHHHHHhhcchhh
Confidence 37899999999999999999999988 899988887632 22222332 36899999999999 5666431 23
Q ss_pred ccCCCceEEEechhhHhhc
Q 029993 72 LDFRNLVILVLDEADRLLD 90 (184)
Q Consensus 72 ~~~~~l~~lVvDEaD~l~~ 90 (184)
..++++.++|+||||.|+-
T Consensus 191 ~~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 191 KFLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred cccccCcEEEEecHhhHhh
Confidence 4578999999999999964
No 79
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.13 E-value=5.7e-10 Score=97.23 Aligned_cols=115 Identities=20% Similarity=0.359 Sum_probs=93.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcch---HHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
||..++||.-||.|.+..+.++.+.+ ++++..++|.... ++....+.++..||+|||..-+- ..+.|+++
T Consensus 313 Q~ALMAPTEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ------d~V~F~~L 385 (677)
T COG1200 313 QAALMAPTEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ------DKVEFHNL 385 (677)
T ss_pred eeEEeccHHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh------cceeecce
Confidence 68899999999999999999999988 8999999997553 44455666677999999995332 57899999
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCC-CceEEEEeeeCchHHHHHHHH
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSATQTEAVEELSKA 127 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~-~~q~i~~SAT~~~~v~~~~~~ 127 (184)
.++|+||-|+ |+-+=+..++.-+. .+..+++|||.-|+...+.--
T Consensus 386 gLVIiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~f 431 (677)
T COG1200 386 GLVIIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAF 431 (677)
T ss_pred eEEEEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHh
Confidence 9999999998 45555666777777 688999999988876665543
No 80
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.11 E-value=6.4e-10 Score=101.37 Aligned_cols=140 Identities=24% Similarity=0.237 Sum_probs=113.1
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+++.+|.++|..|.++.+....... .-.+.+.+|+.+. +.+..++|.|-+-|.+|+.. +...+..+.++|
T Consensus 165 viYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~TGDv~I--------N~~A~clvMTTEILRnMlyr-g~~~~~~i~~Vi 234 (1041)
T COG4581 165 VIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLMTGDVSI--------NPDAPCLVMTTEILRNMLYR-GSESLRDIEWVV 234 (1041)
T ss_pred eEeccchhhhhhhHHHHHHHHhhhh-hhhccceecceee--------CCCCceEEeeHHHHHHHhcc-CcccccccceEE
Confidence 5788999999999999888764422 1235677777764 67789999999999999998 778899999999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCC---CCeEEEEccCCccccccchhhhhcccCC
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR---NPVRIEVRAESKSHHASASSQQLASSKT 158 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
+||+|.|-+...+.-.+.++-.+|+..|++++|||+|+. .+|..|+-+ .|.++...+. -
T Consensus 235 FDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t~~-----------------R 296 (1041)
T COG4581 235 FDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPNA-EEFAEWIQRVHSQPIHVVSTEH-----------------R 296 (1041)
T ss_pred EEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCCCH-HHHHHHHHhccCCCeEEEeecC-----------------C
Confidence 999999999888888888999999999999999999988 778888763 4666655544 5
Q ss_pred CCcceeEEEEe
Q 029993 159 PLGLHLEVLRL 169 (184)
Q Consensus 159 ~~~l~~~~~~~ 169 (184)
|..|.|+|..-
T Consensus 297 pvPL~~~~~~~ 307 (1041)
T COG4581 297 PVPLEHFVYVG 307 (1041)
T ss_pred CCCeEEEEecC
Confidence 66666776655
No 81
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.08 E-value=4.4e-10 Score=100.93 Aligned_cols=85 Identities=18% Similarity=0.242 Sum_probs=72.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhcCC-----ccC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDV-----LDF 74 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~~~-----~~~ 74 (184)
++-|++||++||.|.++.+..+.+++ ++++.++.|+.+..++.... .+||++|||++| .++++..-. ...
T Consensus 124 ~V~IvTpn~yLA~rd~e~~~~l~~~L-Glsv~~i~~~~~~~er~~~y---~~dI~ygT~~elgfDyLrd~~~~~~~~~~~ 199 (830)
T PRK12904 124 GVHVVTVNDYLAKRDAEWMGPLYEFL-GLSVGVILSGMSPEERREAY---AADITYGTNNEFGFDYLRDNMVFSLEERVQ 199 (830)
T ss_pred CEEEEecCHHHHHHHHHHHHHHHhhc-CCeEEEEcCCCCHHHHHHhc---CCCeEEECCcchhhhhhhcccccchhhhcc
Confidence 35699999999999999999999988 99999999998876655443 589999999999 889986221 237
Q ss_pred CCceEEEechhhHhh
Q 029993 75 RNLVILVLDEADRLL 89 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~ 89 (184)
+.+.++|+||||.|+
T Consensus 200 r~~~~aIvDEaDsiL 214 (830)
T PRK12904 200 RGLNYAIVDEVDSIL 214 (830)
T ss_pred cccceEEEechhhhe
Confidence 889999999999986
No 82
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=1.9e-09 Score=93.39 Aligned_cols=112 Identities=19% Similarity=0.241 Sum_probs=78.6
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
++||++|+++|+.|+++.+++.. +.++..++|+.+..+... .+.++.++|+|||+..+. ..++++
T Consensus 27 ~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf--------~p~~~l 94 (505)
T TIGR00595 27 SVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF--------LPFKNL 94 (505)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc--------CcccCC
Confidence 58999999999999999888753 456778888776544433 333456899999998663 247889
Q ss_pred eEEEechhhHhhcc---c--h-HHHHHHHHHhCCCCceEEEEeeeCchHHHHHH
Q 029993 78 VILVLDEADRLLDM---G--F-QKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (184)
Q Consensus 78 ~~lVvDEaD~l~~~---~--~-~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~ 125 (184)
.++|+||+|...-. + | ..++.. ++....+.+++++|||.+.+....+
T Consensus 95 ~lIIVDEeh~~sykq~~~p~y~ar~~a~-~ra~~~~~~vil~SATPsles~~~~ 147 (505)
T TIGR00595 95 GLIIVDEEHDSSYKQEEGPRYHARDVAV-YRAKKFNCPVVLGSATPSLESYHNA 147 (505)
T ss_pred CEEEEECCCccccccccCCCCcHHHHHH-HHHHhcCCCEEEEeCCCCHHHHHHH
Confidence 99999999975421 1 1 122322 3333457899999999876655444
No 83
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.06 E-value=3.4e-10 Score=96.84 Aligned_cols=128 Identities=22% Similarity=0.177 Sum_probs=95.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
-|+|||--+||.|-|..|.+--+.+ ++++..-+|-+..+.... .-....+||||||-+-+..+++. + -++.++.
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt-g-~~lgdiG 340 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT-G-KDLGDIG 340 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc-C-Ccccccc
Confidence 3799999999999999998755556 788877777665443321 11134689999999999999987 5 6789999
Q ss_pred EEEechhhHhhccc---hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCe
Q 029993 79 ILVLDEADRLLDMG---FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPV 133 (184)
Q Consensus 79 ~lVvDEaD~l~~~~---~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~ 133 (184)
.+|+||+|.+-+.. ..+-+..=++.+-+..|+|.+|||..+. +.+++.+--+++
T Consensus 341 tVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV 397 (830)
T COG1202 341 TVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLV 397 (830)
T ss_pred eEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeE
Confidence 99999999886633 2333333345555689999999999887 678877654443
No 84
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.04 E-value=1.1e-09 Score=98.72 Aligned_cols=149 Identities=16% Similarity=0.180 Sum_probs=103.8
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhc-C-CccCCCceE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-D-VLDFRNLVI 79 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~-~-~~~~~~l~~ 79 (184)
.++|+|+++||..+.+-+.+-...+ +++|.-++|+....+.. + ..++|||+||++..-.-+.. + .--++.++.
T Consensus 167 iVYIaPmKALa~Em~~~~~kkl~~~-gi~v~ELTGD~ql~~te--i--~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~L 241 (1230)
T KOG0952|consen 167 IVYIAPMKALAAEMVDKFSKKLAPL-GISVRELTGDTQLTKTE--I--ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRL 241 (1230)
T ss_pred EEEEechHHHHHHHHHHHhhhcccc-cceEEEecCcchhhHHH--H--HhcCEEEecccceeeeeeeeccchhhhhheee
Confidence 5899999999999977666554444 89999999998865543 3 35899999998764433320 1 112788999
Q ss_pred EEechhhHhhccchHHHHHHHHHhCC-------CCceEEEEeeeCchHHHHHHHHhCCC-CeEEEEccCCccccccchhh
Q 029993 80 LVLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLRN-PVRIEVRAESKSHHASASSQ 151 (184)
Q Consensus 80 lVvDEaD~l~~~~~~~~l~~i~~~l~-------~~~q~i~~SAT~~~~v~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~ 151 (184)
+|+||+|.| ....++-++.|+.++. ...+++.+|||+|+= ++++.+.=-+ +.-+..=++
T Consensus 242 viIDEVHlL-hd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~----------- 308 (1230)
T KOG0952|consen 242 VIIDEVHLL-HDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQ----------- 308 (1230)
T ss_pred EEeeeehhh-cCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecc-----------
Confidence 999999964 5557888888776664 356899999999975 6666654334 233332223
Q ss_pred hhcccCCCCcceeEEEEecCc
Q 029993 152 QLASSKTPLGLHLEVLRLNIF 172 (184)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~~~~ 172 (184)
...|-.+.+.++-++..
T Consensus 309 ----~yRPvpL~~~~iG~k~~ 325 (1230)
T KOG0952|consen 309 ----RYRPVPLTQGFIGIKGK 325 (1230)
T ss_pred ----cccccceeeeEEeeecc
Confidence 45677777777766653
No 85
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.97 E-value=1.6e-09 Score=95.54 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=67.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhcCC--------
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDV-------- 71 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~~~-------- 71 (184)
+|+|++||++||.|.++.+.++..++ ++++..++||.+.. .+.. ..++||++||...+ .++++..=.
T Consensus 146 ~v~VvTptreLA~qdae~~~~l~~~l-Glsv~~i~gg~~~~--~r~~-~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~ 221 (656)
T PRK12898 146 PVHVITVNDYLAERDAELMRPLYEAL-GLTVGCVVEDQSPD--ERRA-AYGADITYCTNKELVFDYLRDRLALGQRASDA 221 (656)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhc-CCEEEEEeCCCCHH--HHHH-HcCCCEEEECCCchhhhhccccccccccccch
Confidence 58999999999999999999999988 89999999997643 2333 36899999999998 556554100
Q ss_pred ----------------ccCCCceEEEechhhHhh
Q 029993 72 ----------------LDFRNLVILVLDEADRLL 89 (184)
Q Consensus 72 ----------------~~~~~l~~lVvDEaD~l~ 89 (184)
.-.+.+.+.|+||+|.++
T Consensus 222 ~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 222 RLALESLHGRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred hhhhhhhccccCchhhhcccccceeEeeccccee
Confidence 113668899999999975
No 86
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.92 E-value=4e-09 Score=94.52 Aligned_cols=138 Identities=25% Similarity=0.227 Sum_probs=111.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+++-+|-++|..|-++.|+.-... +.+++|+... +..+..+|.|-+.|..|+.+ +.--.+++.++|
T Consensus 343 ~iYTSPIKALSNQKfRDFk~tF~D-----vgLlTGDvqi--------nPeAsCLIMTTEILRsMLYr-gadliRDvE~VI 408 (1248)
T KOG0947|consen 343 TIYTSPIKALSNQKFRDFKETFGD-----VGLLTGDVQI--------NPEASCLIMTTEILRSMLYR-GADLIRDVEFVI 408 (1248)
T ss_pred eEecchhhhhccchHHHHHHhccc-----cceeecceee--------CCCcceEeehHHHHHHHHhc-ccchhhccceEE
Confidence 567889999999999998886443 2378888764 45678999999999999998 666689999999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCC-CCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR-NPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+||+|.+-+...+--..+++-.+|+..++|++|||.|+. .+|+.|.-+ .-..|.+... .+.|-
T Consensus 409 FDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~-~EFA~WIGRtK~K~IyViST---------------~kRPV 472 (1248)
T KOG0947|consen 409 FDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPNT-LEFADWIGRTKQKTIYVIST---------------SKRPV 472 (1248)
T ss_pred EeeeeecccccccccceeeeeeccccceEEEEeccCCCh-HHHHHHhhhccCceEEEEec---------------CCCcc
Confidence 999999988887888888999999999999999999988 668888776 3444554445 55677
Q ss_pred cceeEEEEe
Q 029993 161 GLHLEVLRL 169 (184)
Q Consensus 161 ~l~~~~~~~ 169 (184)
.|+||+..-
T Consensus 473 PLEh~l~t~ 481 (1248)
T KOG0947|consen 473 PLEHYLYTK 481 (1248)
T ss_pred ceEEEEEec
Confidence 777776554
No 87
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.92 E-value=1.5e-08 Score=85.71 Aligned_cols=161 Identities=17% Similarity=0.191 Sum_probs=106.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCC----------ce--------EEEEECCcchHHHHHHHHH--------------
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPD----------VK--------SMLLVGGVEVKADVKKIEE-------------- 49 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~----------~~--------~~~~~~~~~~~~~~~~l~~-------------- 49 (184)
+|||+|+|.-|.++.+.+.++...-.. .. ...-......+++...++.
T Consensus 40 VLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGik~t 119 (442)
T PF06862_consen 40 VLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGIKFT 119 (442)
T ss_pred EEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeEEEe
Confidence 799999999999999999988653100 00 0000001112223333332
Q ss_pred ----------cCCcEeeechHHHHHHHHh----cCCcc-CCCceEEEechhhHhhccchHHHHHHHHHhCCC--------
Q 029993 50 ----------EGANLLIGTPGRLYDIMER----MDVLD-FRNLVILVLDEADRLLDMGFQKQISYIISRLPK-------- 106 (184)
Q Consensus 50 ----------~~~~IlV~TP~~l~~~~~~----~~~~~-~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~-------- 106 (184)
.++|||||+|-.|...+.. .+..| +++++++|+|.||.|+-+ ..+++..+++.+..
T Consensus 120 rk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQ-NW~Hv~~v~~~lN~~P~~~~~~ 198 (442)
T PF06862_consen 120 RKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQ-NWEHVLHVFEHLNLQPKKSHDT 198 (442)
T ss_pred cCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHh-hHHHHHHHHHHhccCCCCCCCC
Confidence 2379999999999988874 12333 899999999999998766 47788888777742
Q ss_pred ----------------CceEEEEeeeCchHHHHHHHHhCCCC-eEEEEccCCccccccchhhhhcccCCCCcceeEEEEe
Q 029993 107 ----------------LRRTGLFSATQTEAVEELSKAGLRNP-VRIEVRAESKSHHASASSQQLASSKTPLGLHLEVLRL 169 (184)
Q Consensus 107 ----------------~~q~i~~SAT~~~~v~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 169 (184)
-+|++++|+..++++..+.+.++.|. -.+.+...... .+........+.|.|...
T Consensus 199 DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~--------~g~i~~v~~~v~Q~F~r~ 270 (442)
T PF06862_consen 199 DFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEA--------SGVISQVVVQVRQVFQRF 270 (442)
T ss_pred CHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeecccc--------ceeeeccccCCceEEEEe
Confidence 15999999999999999999988764 23333332110 011134556777887775
Q ss_pred cC
Q 029993 170 NI 171 (184)
Q Consensus 170 ~~ 171 (184)
+.
T Consensus 271 ~~ 272 (442)
T PF06862_consen 271 DC 272 (442)
T ss_pred cC
Confidence 53
No 88
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=98.91 E-value=6.2e-09 Score=91.99 Aligned_cols=131 Identities=14% Similarity=0.171 Sum_probs=95.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCcc-CCCceEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD-FRNLVIL 80 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~-~~~l~~l 80 (184)
+++++||+-|..|....+..++. +-++....||.........++ ..++|+|.||..+.+.+.. +..+ ++++.++
T Consensus 109 iVF~aP~~pLv~QQ~a~~~~~~~---~~~~T~~l~~~~~~~~r~~i~-~s~~vff~TpQil~ndL~~-~~~~~ls~fs~i 183 (746)
T KOG0354|consen 109 VVFLAPTRPLVNQQIACFSIYLI---PYSVTGQLGDTVPRSNRGEIV-ASKRVFFRTPQILENDLKS-GLHDELSDFSLI 183 (746)
T ss_pred EEEeeCCchHHHHHHHHHhhccC---cccceeeccCccCCCchhhhh-cccceEEeChHhhhhhccc-ccccccceEEEE
Confidence 68999999999999966665543 356666677644333333443 4789999999999999987 5544 6999999
Q ss_pred EechhhHhhccc-hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEE
Q 029993 81 VLDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEV 137 (184)
Q Consensus 81 VvDEaD~l~~~~-~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~ 137 (184)
|+||||+-.+.. |..-++..+..-....|++++|||+.....+......+=..-+.+
T Consensus 184 v~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldv 241 (746)
T KOG0354|consen 184 VFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDV 241 (746)
T ss_pred EEcccccccccccHHHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheeccc
Confidence 999999988764 566565666665566699999999998877766655443333333
No 89
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.90 E-value=4.1e-09 Score=94.98 Aligned_cols=84 Identities=19% Similarity=0.281 Sum_probs=71.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhcC-CccC-----
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD-VLDF----- 74 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~~-~~~~----- 74 (184)
+.|++||++||.|..+++..+..++ ++++..+.++.+..+. ....+|||++|||+++ .++++. + .++.
T Consensus 126 VhIvT~ndyLA~RD~e~m~~l~~~l-Glsv~~i~~~~~~~~r---~~~Y~~dI~YgT~~e~gfDyLrd-nm~~~~~~~vq 200 (908)
T PRK13107 126 VHVITVNDYLARRDAENNRPLFEFL-GLTVGINVAGLGQQEK---KAAYNADITYGTNNEFGFDYLRD-NMAFSPQERVQ 200 (908)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhc-CCeEEEecCCCCHHHH---HhcCCCCeEEeCCCcccchhhhc-cCccchhhhhc
Confidence 7899999999999999999999998 9999999988775322 2234799999999999 898887 4 4444
Q ss_pred CCceEEEechhhHhhc
Q 029993 75 RNLVILVLDEADRLLD 90 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~ 90 (184)
+.+.+.|+||||.++-
T Consensus 201 r~~~~aIvDEvDsiLi 216 (908)
T PRK13107 201 RPLHYALIDEVDSILI 216 (908)
T ss_pred cccceeeecchhhhcc
Confidence 8899999999999874
No 90
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.75 E-value=2e-08 Score=88.31 Aligned_cols=135 Identities=21% Similarity=0.207 Sum_probs=106.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+++-.|-++|..|-|+.+..=.++ |.+-+|+-.. +..+--+|.|-+.|..|+.. +.--++.+.++|
T Consensus 175 VIYTSPIKALSNQKYREl~~EF~D-----VGLMTGDVTI--------nP~ASCLVMTTEILRsMLYR-GSEvmrEVaWVI 240 (1041)
T KOG0948|consen 175 VIYTSPIKALSNQKYRELLEEFKD-----VGLMTGDVTI--------NPDASCLVMTTEILRSMLYR-GSEVMREVAWVI 240 (1041)
T ss_pred EEeeChhhhhcchhHHHHHHHhcc-----cceeecceee--------CCCCceeeeHHHHHHHHHhc-cchHhheeeeEE
Confidence 467789999999999988774433 4455666553 45567899999999999998 766689999999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCC---CCeEEEEccCCccccccchhhhhcccCC
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR---NPVRIEVRAESKSHHASASSQQLASSKT 158 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
+||+|.|.+...+--..+-+-.+|++.+.+++|||+|+. .+|+.|.++ .|..|--.+- .
T Consensus 241 FDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTdy-----------------R 302 (1041)
T KOG0948|consen 241 FDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNA-RQFAEWICHIHKQPCHVVYTDY-----------------R 302 (1041)
T ss_pred eeeehhccccccceeeeeeEEeccccceEEEEeccCCCH-HHHHHHHHHHhcCCceEEeecC-----------------C
Confidence 999999998776666666667789999999999999987 789998774 7888775554 5
Q ss_pred CCcceeEEEE
Q 029993 159 PLGLHLEVLR 168 (184)
Q Consensus 159 ~~~l~~~~~~ 168 (184)
|-.|+||...
T Consensus 303 PTPLQHyifP 312 (1041)
T KOG0948|consen 303 PTPLQHYIFP 312 (1041)
T ss_pred CCcceeeeec
Confidence 6667787444
No 91
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.69 E-value=3.8e-07 Score=85.81 Aligned_cols=83 Identities=24% Similarity=0.269 Sum_probs=64.4
Q ss_pred HcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhh-HhhccchHHH-HHHHHHhCCCCceEEEEeeeCchHHHHHHH
Q 029993 49 EEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEAD-RLLDMGFQKQ-ISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 49 ~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD-~l~~~~~~~~-l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
+.+.+|.++|||.|+..+.. . ..++++.++|+|||| ++++.+|... +..++... ++.|++++|||++. ..+.+
T Consensus 154 s~~T~I~~~TdGiLLr~l~~-d-~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATld~--~~fa~ 228 (1283)
T TIGR01967 154 SSNTLVKLMTDGILLAETQQ-D-RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATIDP--ERFSR 228 (1283)
T ss_pred CCCceeeeccccHHHHHhhh-C-cccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCcCH--HHHHH
Confidence 35679999999999999876 3 358999999999999 5888887764 66666544 46899999999974 56777
Q ss_pred HhCCCCeEEEE
Q 029993 127 AGLRNPVRIEV 137 (184)
Q Consensus 127 ~~~~~~~~i~~ 137 (184)
.|.+.|+ |.+
T Consensus 229 ~F~~apv-I~V 238 (1283)
T TIGR01967 229 HFNNAPI-IEV 238 (1283)
T ss_pred HhcCCCE-EEE
Confidence 7665564 444
No 92
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.62 E-value=1.4e-07 Score=86.90 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=102.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCcc-CCCceEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD-FRNLVIL 80 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~-~~~l~~l 80 (184)
.++++|.+.|++.+...+.+-.+.+ +++|.-.+|+.....+. + .+.+|+||||+.-.-.-++.+..+ .+-++.+
T Consensus 367 IVYIAPmKaLvqE~VgsfSkRla~~-GI~V~ElTgD~~l~~~q--i--eeTqVIV~TPEK~DiITRk~gdraY~qlvrLl 441 (1674)
T KOG0951|consen 367 IVYIAPMKALVQEMVGSFSKRLAPL-GITVLELTGDSQLGKEQ--I--EETQVIVTTPEKWDIITRKSGDRAYEQLVRLL 441 (1674)
T ss_pred EEEEeeHHHHHHHHHHHHHhhcccc-CcEEEEecccccchhhh--h--hcceeEEeccchhhhhhcccCchhHHHHHHHH
Confidence 4789999999999988887777777 89999999988754332 1 456899999998755444423322 3467899
Q ss_pred EechhhHhhccchHHHHHHHHHhCC-------CCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhh
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQL 153 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~-------~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 153 (184)
|+||.|.+ ..+.++.+.+|..+.. ..++.+.+|||+|+- .+.+.-...+|.-+..-+.
T Consensus 442 IIDEIHLL-hDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~------------- 506 (1674)
T KOG0951|consen 442 IIDEIHLL-HDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDS------------- 506 (1674)
T ss_pred hhhhhhhc-ccccchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccccccCc-------------
Confidence 99999954 4446777777665553 368999999999965 3333322223333333333
Q ss_pred cccCCCCcceeEEEEecC
Q 029993 154 ASSKTPLGLHLEVLRLNI 171 (184)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~ 171 (184)
...|-.|+|.|+-+..
T Consensus 507 --syRpvPL~qq~Igi~e 522 (1674)
T KOG0951|consen 507 --SYRPVPLKQQYIGITE 522 (1674)
T ss_pred --ccCcCCccceEecccc
Confidence 4577778888887765
No 93
>PRK09694 helicase Cas3; Provisional
Probab=98.51 E-value=8.9e-07 Score=81.01 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=81.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhc-CCCceEEEEECCcchHHHH--------------------HHHHHc------CCcE
Q 029993 2 GMIISPTRELSAQIYHVAQPFIST-LPDVKSMLLVGGVEVKADV--------------------KKIEEE------GANL 54 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~--------------------~~l~~~------~~~I 54 (184)
+++..||+.++.|+++.+.++.+. +++..+.+.+|+....... ...... -.+|
T Consensus 334 i~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi 413 (878)
T PRK09694 334 IIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQI 413 (878)
T ss_pred EEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCE
Confidence 568899999999999999875542 3345677777765422110 011111 1699
Q ss_pred eeechHHHHHHHHhcCCccCCCc----eEEEechhhHhhccchHHHHHHHHHhCC-CCceEEEEeeeCchHHHH-HHHHh
Q 029993 55 LIGTPGRLYDIMERMDVLDFRNL----VILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEE-LSKAG 128 (184)
Q Consensus 55 lV~TP~~l~~~~~~~~~~~~~~l----~~lVvDEaD~l~~~~~~~~l~~i~~~l~-~~~q~i~~SAT~~~~v~~-~~~~~ 128 (184)
+|||+..++...-..+...++.+ +.+|+||+|.+ +......+..+++.+. ....+|++|||+|....+ +.+.|
T Consensus 414 ~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~ 492 (878)
T PRK09694 414 GVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTY 492 (878)
T ss_pred EEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHh
Confidence 99999988755443232233333 48999999986 4434555666666553 346799999999988654 44443
No 94
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=4.8e-07 Score=77.15 Aligned_cols=130 Identities=23% Similarity=0.249 Sum_probs=91.1
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEE--------EEECC--------cchHHHH---------------------
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSM--------LLVGG--------VEVKADV--------------------- 44 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~--------~~~~~--------~~~~~~~--------------------- 44 (184)
+||+||+||-|..+.+.+..+..+...-+.. .=++| ...+++.
T Consensus 296 VLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkK 375 (698)
T KOG2340|consen 296 VLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKK 375 (698)
T ss_pred EEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHH
Confidence 7999999999999999999884322110111 01111 0111111
Q ss_pred -HHHHH--cCCcEeeechHHHHHHHHhc----CCcc-CCCceEEEechhhHhhccchHHHHHHHHHhCCC---C------
Q 029993 45 -KKIEE--EGANLLIGTPGRLYDIMERM----DVLD-FRNLVILVLDEADRLLDMGFQKQISYIISRLPK---L------ 107 (184)
Q Consensus 45 -~~l~~--~~~~IlV~TP~~l~~~~~~~----~~~~-~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~---~------ 107 (184)
-.|.+ ...|||||+|-.|.-.+.+. ..++ ++++.++|+|-||.|+.++ .+++..|+..+.. +
T Consensus 376 tikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~Df 454 (698)
T KOG2340|consen 376 TIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDVDF 454 (698)
T ss_pred HHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCCCh
Confidence 12221 35899999999998888742 2233 7899999999999998775 6777788777742 1
Q ss_pred ---------------ceEEEEeeeCchHHHHHHHHhCCCC
Q 029993 108 ---------------RRTGLFSATQTEAVEELSKAGLRNP 132 (184)
Q Consensus 108 ---------------~q~i~~SAT~~~~v~~~~~~~~~~~ 132 (184)
+|+++||+.-.+....+...++.|.
T Consensus 455 SRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~ 494 (698)
T KOG2340|consen 455 SRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNM 494 (698)
T ss_pred hheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhh
Confidence 4999999999999999999988864
No 95
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.43 E-value=9.9e-07 Score=65.50 Aligned_cols=110 Identities=17% Similarity=0.108 Sum_probs=67.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEE-----------ECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLL-----------VGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD 70 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~ 70 (184)
+++++|+..|+.|..+.+..+.... ...... ..................++++.|...+........
T Consensus 53 ~l~~~p~~~l~~Q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~ 130 (184)
T PF04851_consen 53 VLIVAPNISLLEQWYDEFDDFGSEK--YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEK 130 (184)
T ss_dssp EEEEESSHHHHHHHHHHHHHHSTTS--EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH--
T ss_pred eeEecCHHHHHHHHHHHHHHhhhhh--hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhccccc
Confidence 6899999999999999997765432 111110 111110011122224578999999999998876422
Q ss_pred C----------ccCCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 71 V----------LDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 71 ~----------~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
. .......++|+||||++....- ...+++ .+...++.+|||+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 131 KIDESARRSYKLLKNKFDLVIIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp -------GCHHGGGGSESEEEEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred ccccchhhhhhhccccCCEEEEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 1 1234567999999999865431 334444 55678999999975
No 96
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.41 E-value=4.7e-06 Score=75.92 Aligned_cols=87 Identities=21% Similarity=0.331 Sum_probs=64.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCc-c---hHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGV-E---VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
++||+||.-|+.|+++-+++++....+..+...+.+. . .++-...+.++..||+|+|...|..-+..... .+.
T Consensus 128 ~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~---~kF 204 (1187)
T COG1110 128 VYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK---LKF 204 (1187)
T ss_pred EEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc---cCC
Confidence 6899999999999999999998766335554434333 2 23334556667899999999988877665221 356
Q ss_pred eEEEechhhHhhcc
Q 029993 78 VILVLDEADRLLDM 91 (184)
Q Consensus 78 ~~lVvDEaD~l~~~ 91 (184)
.++.+|++|.++..
T Consensus 205 dfifVDDVDA~Lka 218 (1187)
T COG1110 205 DFIFVDDVDAILKA 218 (1187)
T ss_pred CEEEEccHHHHHhc
Confidence 79999999998864
No 97
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=98.41 E-value=6.3e-07 Score=70.78 Aligned_cols=81 Identities=26% Similarity=0.452 Sum_probs=67.6
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEEC-CcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVG-GVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.|||+.+-..|..+.+.++.+... +.+++-++. ....+++...+.+...+|.||||+|+..++.. +.+.+++++++
T Consensus 129 ~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~~l~~i 205 (252)
T PF14617_consen 129 VLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLSNLKRI 205 (252)
T ss_pred EEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCcccCeEE
Confidence 689999999999999999988421 345544443 45788899998778999999999999999988 99999999999
Q ss_pred Eechh
Q 029993 81 VLDEA 85 (184)
Q Consensus 81 VvDEa 85 (184)
|+|--
T Consensus 206 vlD~s 210 (252)
T PF14617_consen 206 VLDWS 210 (252)
T ss_pred EEcCC
Confidence 99974
No 98
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.38 E-value=1.7e-06 Score=77.47 Aligned_cols=105 Identities=12% Similarity=0.126 Sum_probs=70.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHh-------cCCccC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-------MDVLDF 74 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~-------~~~~~~ 74 (184)
+|||||+.+|+.|..+.+.+++. .+...+..++|+.... . ....+|+|+|...+...... ...+.-
T Consensus 301 tLILvps~~Lv~QW~~ef~~~~~-l~~~~I~~~tg~~k~~-----~-~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~ 373 (732)
T TIGR00603 301 CLVLCTSAVSVEQWKQQFKMWST-IDDSQICRFTSDAKER-----F-HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTN 373 (732)
T ss_pred EEEEeCcHHHHHHHHHHHHHhcC-CCCceEEEEecCcccc-----c-ccCCcEEEEEHHHhhcccccchhhhHHHHHhcc
Confidence 69999999999999999999853 3345666666653211 1 12468999999877532111 012223
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
....++|+||+|++-... ...++..++ .+..+++|||+.
T Consensus 374 ~~~gLII~DEvH~lpA~~----fr~il~~l~-a~~RLGLTATP~ 412 (732)
T TIGR00603 374 REWGLILLDEVHVVPAAM----FRRVLTIVQ-AHCKLGLTATLV 412 (732)
T ss_pred ccCCEEEEEccccccHHH----HHHHHHhcC-cCcEEEEeecCc
Confidence 467799999999985433 444555554 356799999985
No 99
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.33 E-value=2.2e-06 Score=73.35 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=66.8
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcC-CcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEG-ANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+||||||++|+.|..+.+.+.... + .....+||... +.. ..|.|+|-..+...-.. ..+..++..++
T Consensus 83 ~Lvlv~~~~L~~Qw~~~~~~~~~~--~-~~~g~~~~~~~--------~~~~~~i~vat~qtl~~~~~l-~~~~~~~~~li 150 (442)
T COG1061 83 TLVLVPTKELLDQWAEALKKFLLL--N-DEIGIYGGGEK--------ELEPAKVTVATVQTLARRQLL-DEFLGNEFGLI 150 (442)
T ss_pred EEEEECcHHHHHHHHHHHHHhcCC--c-cccceecCcee--------ccCCCcEEEEEhHHHhhhhhh-hhhcccccCEE
Confidence 699999999999998766665322 1 12333444432 112 37999999998874211 23334478899
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
|+||+|++.+..+......+....+ .+.+|||++
T Consensus 151 I~DE~Hh~~a~~~~~~~~~~~~~~~----~LGLTATp~ 184 (442)
T COG1061 151 IFDEVHHLPAPSYRRILELLSAAYP----RLGLTATPE 184 (442)
T ss_pred EEEccccCCcHHHHHHHHhhhcccc----eeeeccCce
Confidence 9999999877665554444333222 899999976
No 100
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.15 E-value=1.7e-05 Score=71.09 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=65.6
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhc-CCccCCCc-eE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-DVLDFRNL-VI 79 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~-~~~~~~~l-~~ 79 (184)
+|||||+.+|..|+.+.+..++... + .+..+...-...+.+....|+|+|...+...+... ..+...+- -+
T Consensus 296 vl~lvdR~~L~~Q~~~~f~~~~~~~--~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~l 368 (667)
T TIGR00348 296 VFFVVDRRELDYQLMKEFQSLQKDC--A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVV 368 (667)
T ss_pred EEEEECcHHHHHHHHHHHHhhCCCC--C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEE
Confidence 6899999999999999999875321 1 11112222223333345789999999998754320 11111111 27
Q ss_pred EEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 80 lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
+|+||||+.....+.. .+.+.+| +...++||||.-
T Consensus 369 vIvDEaHrs~~~~~~~---~l~~~~p-~a~~lGfTaTP~ 403 (667)
T TIGR00348 369 VIFDEAHRSQYGELAK---NLKKALK-NASFFGFTGTPI 403 (667)
T ss_pred EEEEcCccccchHHHH---HHHhhCC-CCcEEEEeCCCc
Confidence 9999999864333332 2334454 478999999984
No 101
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.13 E-value=9.5e-06 Score=58.72 Aligned_cols=106 Identities=10% Similarity=0.115 Sum_probs=63.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
.|||.|||-+|..+++.++.. +++...-..+. . ..++.-|=|.|-+.+..++.+ .....+..++|
T Consensus 36 vLvL~PTRvva~em~~aL~~~-----~~~~~t~~~~~-------~-~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II 100 (148)
T PF07652_consen 36 VLVLAPTRVVAEEMYEALKGL-----PVRFHTNARMR-------T-HFGSSIIDVMCHATYGHFLLN--PCRLKNYDVII 100 (148)
T ss_dssp EEEEESSHHHHHHHHHHTTTS-----SEEEESTTSS------------SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEE
T ss_pred EEEecccHHHHHHHHHHHhcC-----CcccCceeeec-------c-ccCCCcccccccHHHHHHhcC--cccccCccEEE
Confidence 699999999999998887654 23332111111 0 124456678899888887765 44568899999
Q ss_pred echhhHhhcc--chHHHHHHHHHhCCCCceEEEEeeeCchHHHHH
Q 029993 82 LDEADRLLDM--GFQKQISYIISRLPKLRRTGLFSATQTEAVEEL 124 (184)
Q Consensus 82 vDEaD~l~~~--~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~ 124 (184)
+||+|.+-.. .+...+..... . ..+.+|+.|||.|.....+
T Consensus 101 ~DEcH~~Dp~sIA~rg~l~~~~~-~-g~~~~i~mTATPPG~~~~f 143 (148)
T PF07652_consen 101 MDECHFTDPTSIAARGYLRELAE-S-GEAKVIFMTATPPGSEDEF 143 (148)
T ss_dssp ECTTT--SHHHHHHHHHHHHHHH-T-TS-EEEEEESS-TT---SS
T ss_pred EeccccCCHHHHhhheeHHHhhh-c-cCeeEEEEeCCCCCCCCCC
Confidence 9999985322 24444444433 2 2367999999999875433
No 102
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.10 E-value=2.4e-05 Score=68.45 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=92.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
.|||+|--.|-....+.++.. +++++.+.+..+.++.. ..+..+..+++.-+|++|..---. ..+.--.+.
T Consensus 60 TLVVSPLiSLM~DQV~~l~~~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~ 133 (590)
T COG0514 60 TLVVSPLISLMKDQVDQLEAA-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPIS 133 (590)
T ss_pred EEEECchHHHHHHHHHHHHHc-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCc
Confidence 689999999999988888875 57888888776655443 334445589999999998543222 222345678
Q ss_pred EEEechhhHhhcc--chHHHHHHH---HHhCCCCceEEEEeeeCchHHHHHHHHhC--CCCeEEE
Q 029993 79 ILVLDEADRLLDM--GFQKQISYI---ISRLPKLRRTGLFSATQTEAVEELSKAGL--RNPVRIE 136 (184)
Q Consensus 79 ~lVvDEaD~l~~~--~~~~~l~~i---~~~l~~~~q~i~~SAT~~~~v~~~~~~~~--~~~~~i~ 136 (184)
.+||||||.+..- +|+++..++ ...+| +..++.++||-++.+..=+...+ .+|..+.
T Consensus 134 l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~ 197 (590)
T COG0514 134 LVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFR 197 (590)
T ss_pred eEEechHHHHhhcCCccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEE
Confidence 9999999999865 488888765 44455 68899999999999887555544 4554444
No 103
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.99 E-value=2.2e-05 Score=62.91 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=66.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHh--cCCccCCCceE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER--MDVLDFRNLVI 79 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~--~~~~~~~~l~~ 79 (184)
+||++|+ .+..|....+.+++... ++++....|+.......... ....+++|+|.+.+...... ...+.--+...
T Consensus 61 ~LIv~P~-~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~~~~~-~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~ 137 (299)
T PF00176_consen 61 TLIVVPS-SLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRLSKNQ-LPKYDVVITTYETLRKARKKKDKEDLKQIKWDR 137 (299)
T ss_dssp EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHTTSSS-CCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEE
T ss_pred eeEeecc-chhhhhhhhhccccccc-cccccccccccccccccccc-cccceeeecccccccccccccccccccccccee
Confidence 6999999 77788988888887432 56766666655222221111 24689999999999811000 00111133789
Q ss_pred EEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC
Q 029993 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (184)
Q Consensus 80 lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~ 117 (184)
+|+||+|.+- +........+..+. ....+++|||.
T Consensus 138 vIvDEaH~~k--~~~s~~~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 138 VIVDEAHRLK--NKDSKRYKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp EEETTGGGGT--TTTSHHHHHHHCCC-ECEEEEE-SS-
T ss_pred EEEecccccc--cccccccccccccc-cceEEeecccc
Confidence 9999999983 23334444455565 57788899995
No 104
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.98 E-value=2.2e-05 Score=71.44 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=76.8
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhc--CCccCCCceE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDFRNLVI 79 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~--~~~~~~~l~~ 79 (184)
+++++||+.|..|+...+..-...-.-.+...+.|....+.+...+ +|+|+|+-|+.+-.++-.. ..-..+++++
T Consensus 559 VIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsinp~---nCQVLITvPecleslLlspp~~q~~cerIRy 635 (1330)
T KOG0949|consen 559 VIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSINPW---NCQVLITVPECLESLLLSPPHHQKFCERIRY 635 (1330)
T ss_pred EEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCCch---hceEEEEchHHHHHHhcCchhhhhhhhcceE
Confidence 5789999999999987766543211124445566666555544332 6999999999998888661 1224789999
Q ss_pred EEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchH
Q 029993 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (184)
Q Consensus 80 lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~ 120 (184)
+|+||+|.+-...-.-....++-.. .|-++.+|||+.+.
T Consensus 636 iIfDEVH~iG~~ed~l~~Eqll~li--~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 636 IIFDEVHLIGNEEDGLLWEQLLLLI--PCPFLVLSATIGNP 674 (1330)
T ss_pred EEechhhhccccccchHHHHHHHhc--CCCeeEEecccCCH
Confidence 9999999875443222222233222 38899999999764
No 105
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=97.96 E-value=3.7e-05 Score=72.38 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=72.1
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhc----CCccCCCc
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM----DVLDFRNL 77 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~----~~~~~~~l 77 (184)
+|+|||+++|+.|..+.|..+.... ......+++...... .......+|+|+|...+...+... ..+.+...
T Consensus 466 VLfLvDR~~L~~Qa~~~F~~~~~~~-~~~~~~i~~i~~L~~---~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~f 541 (1123)
T PRK11448 466 ILFLVDRSALGEQAEDAFKDTKIEG-DQTFASIYDIKGLED---KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQY 541 (1123)
T ss_pred EEEEecHHHHHHHHHHHHHhccccc-ccchhhhhchhhhhh---hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcc
Confidence 6899999999999999998863211 112212222111111 111245799999999987765321 12456778
Q ss_pred eEEEechhhHhhcc---------------chHHHHHHHHHhCCCCceEEEEeeeCchH
Q 029993 78 VILVLDEADRLLDM---------------GFQKQISYIISRLPKLRRTGLFSATQTEA 120 (184)
Q Consensus 78 ~~lVvDEaD~l~~~---------------~~~~~l~~i~~~l~~~~q~i~~SAT~~~~ 120 (184)
.++|+||||+-... ++....+.++.++. .-.++||||....
T Consensus 542 dlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~ 597 (1123)
T PRK11448 542 DCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALH 597 (1123)
T ss_pred cEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC--ccEEEEecCCccc
Confidence 89999999995320 12355677777663 5679999998644
No 106
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.96 E-value=2.8e-05 Score=70.79 Aligned_cols=83 Identities=17% Similarity=0.232 Sum_probs=65.6
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhcCCcc------
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVLD------ 73 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~~~~~------ 73 (184)
++-|++||.-||.|-++.+..+..++ ++++.++.++.+..+. +.. -.+||++||...+ .++++. .+.
T Consensus 125 ~VhvvT~ndyLA~RD~e~m~~l~~~l-Gl~v~~i~~~~~~~er-r~~--Y~~dI~YGT~~e~gFDYLrD--~~~~~~~~~ 198 (913)
T PRK13103 125 GVHVVTVNDYLARRDANWMRPLYEFL-GLSVGIVTPFQPPEEK-RAA--YAADITYGTNNEFGFDYLRD--NMAFSLDDK 198 (913)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhccc-CCEEEEECCCCCHHHH-HHH--hcCCEEEEcccccccchhhc--cceechhhh
Confidence 47899999999999999999999988 8999998877664443 333 3589999999886 344443 122
Q ss_pred -CCCceEEEechhhHhh
Q 029993 74 -FRNLVILVLDEADRLL 89 (184)
Q Consensus 74 -~~~l~~lVvDEaD~l~ 89 (184)
.+.+.+.|+||+|.++
T Consensus 199 vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 199 FQRELNFAVIDEVDSIL 215 (913)
T ss_pred cccccceeEechhhhee
Confidence 3889999999999986
No 107
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.78 E-value=0.00043 Score=64.66 Aligned_cols=106 Identities=14% Similarity=0.183 Sum_probs=69.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH--HHHHcCCcEeeechHHHHHHHHhcCCccCCCceE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK--KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVI 79 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~ 79 (184)
.|||||..- ..|..+.+.+++ |.+++..++|......... .+.....+|+|+|.+.+...... +.--...+
T Consensus 222 ~LIVvP~Sl-L~nW~~Ei~kw~---p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~ 294 (1033)
T PLN03142 222 HMVVAPKST-LGNWMNEIRRFC---PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRY 294 (1033)
T ss_pred EEEEeChHH-HHHHHHHHHHHC---CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCE
Confidence 589999654 566767777664 5678888777654322221 12235689999999988664332 22234679
Q ss_pred EEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC
Q 029993 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (184)
Q Consensus 80 lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~ 117 (184)
+|+||||.+-. ....+...++.+.. ...+++|+|.
T Consensus 295 VIvDEAHrIKN--~~Sklskalr~L~a-~~RLLLTGTP 329 (1033)
T PLN03142 295 IIIDEAHRIKN--ENSLLSKTMRLFST-NYRLLITGTP 329 (1033)
T ss_pred EEEcCccccCC--HHHHHHHHHHHhhc-CcEEEEecCC
Confidence 99999999743 34455666677754 4557789996
No 108
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=97.68 E-value=0.00061 Score=60.95 Aligned_cols=118 Identities=20% Similarity=0.215 Sum_probs=77.5
Q ss_pred EEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH--HHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK--KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
||++|-.-|. ++++++.++.|++++...+|+........ ....++.||+|+|-+..+.-- ..+.--+.+++
T Consensus 221 LVi~P~StL~----NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk---~~lk~~~W~yl 293 (971)
T KOG0385|consen 221 LVIAPKSTLD----NWMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK---SFLKKFNWRYL 293 (971)
T ss_pred EEEeeHhhHH----HHHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH---HHHhcCCceEE
Confidence 7899977664 45666666778999999999875443322 222457999999998776531 22223457899
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC-chH---HHHHHHHhCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-TEA---VEELSKAGLR 130 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~-~~~---v~~~~~~~~~ 130 (184)
||||||++=. -...+..+++.+....+.++ +.|. -++ .+.+..-.++
T Consensus 294 vIDEaHRiKN--~~s~L~~~lr~f~~~nrLLl-TGTPLQNNL~ELWaLLnFllP 344 (971)
T KOG0385|consen 294 VIDEAHRIKN--EKSKLSKILREFKTDNRLLL-TGTPLQNNLHELWALLNFLLP 344 (971)
T ss_pred Eechhhhhcc--hhhHHHHHHHHhcccceeEe-eCCcccccHHHHHHHHHhhch
Confidence 9999999743 35556678888876665555 5664 333 4444444444
No 109
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.56 E-value=0.00034 Score=58.93 Aligned_cols=134 Identities=19% Similarity=0.148 Sum_probs=89.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHc--CCcEeeechHHHHHHHHh---cCCcc
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEE--GANLLIGTPGRLYDIMER---MDVLD 73 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~--~~~IlV~TP~~l~~~~~~---~~~~~ 73 (184)
-+|+.|--+|.....+.+.+| ++.+..+.+..+..+..+ .+... ...++--||+.-..-.-+ ..-.+
T Consensus 64 TIV~SPLiALIkDQiDHL~~L-----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~ 138 (641)
T KOG0352|consen 64 TIVISPLIALIKDQIDHLKRL-----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLAN 138 (641)
T ss_pred EEEehHHHHHHHHHHHHHHhc-----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhh
Confidence 578899888888887777776 566766666655444322 23333 456888999864322211 01223
Q ss_pred CCCceEEEechhhHhhc--cchHHHHHHH--HHhCCCCceEEEEeeeCchHHHH--HHHHhCCCCeEEEEccC
Q 029993 74 FRNLVILVLDEADRLLD--MGFQKQISYI--ISRLPKLRRTGLFSATQTEAVEE--LSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~--~~~~~~l~~i--~~~l~~~~q~i~~SAT~~~~v~~--~~~~~~~~~~~i~~~~~ 140 (184)
-+-|.++|+||||..-. .+|+++...+ +++--...-.+.++||-+++|.+ ++...+++|+.+.....
T Consensus 139 r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~ 211 (641)
T KOG0352|consen 139 RDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT 211 (641)
T ss_pred hceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc
Confidence 56789999999999864 4577776653 23333456778889999999876 66677889998875553
No 110
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.56 E-value=0.00071 Score=60.25 Aligned_cols=40 Identities=20% Similarity=0.067 Sum_probs=30.8
Q ss_pred cCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhc
Q 029993 50 EGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLD 90 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~ 90 (184)
..+||+|+++..|...++.... -+-...++|+||||++.+
T Consensus 181 ~~AdivItNHalL~~~~~~~~~-iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 181 RRCRILFCTHAMLGLAFRDKWG-LLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred ccCCEEEECHHHHHHHhhhhcC-CCCCCCEEEEeCCcchHH
Confidence 5679999999998887655222 244578999999999865
No 111
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.51 E-value=0.0012 Score=59.36 Aligned_cols=115 Identities=10% Similarity=0.134 Sum_probs=77.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
++|||+|...|+.|+...++...+ +-.+..++++.+..+... .+.++...|+|||-..+. ..++++
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF--------aP~~~L 258 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF--------APVEDL 258 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE--------eccCCC
Confidence 689999999999999998887542 356778888776655544 334566899999984222 248899
Q ss_pred eEEEechhhH-hhccc--hHHHHHHH--HHhCCCCceEEEEeeeCchHHHHHHH
Q 029993 78 VILVLDEADR-LLDMG--FQKQISYI--ISRLPKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 78 ~~lVvDEaD~-l~~~~--~~~~l~~i--~~~l~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
..+|+||=|. .+.+. -.-+.+.+ .+.-..++.+++-|||.+-+....+.
T Consensus 259 gLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~ 312 (665)
T PRK14873 259 GLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVE 312 (665)
T ss_pred CEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHh
Confidence 9999988764 23321 11222222 23333568899999999987665443
No 112
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.50 E-value=0.00098 Score=61.29 Aligned_cols=87 Identities=23% Similarity=0.253 Sum_probs=60.2
Q ss_pred CEEEEeccHHHHHHH-HHHHHHhhhcCCCceEEEEECCcch------HH---------H---------------------
Q 029993 1 MGMIISPTRELSAQI-YHVAQPFISTLPDVKSMLLVGGVEV------KA---------D--------------------- 43 (184)
Q Consensus 1 ~alIl~PtreLa~Qi-~~~~~~l~~~~~~~~~~~~~~~~~~------~~---------~--------------------- 43 (184)
+++|++||++|+.|+ .+.+..+++.+ ++++..+.|+.+. .. +
T Consensus 293 ~vvI~t~T~~Lq~Ql~~~~i~~l~~~~-~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~ 371 (820)
T PRK07246 293 QIIVSVPTKILQDQIMAEEVKAIQEVF-HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLD 371 (820)
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHHHhc-CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHh
Confidence 489999999999999 57788887766 6777766654321 00 0
Q ss_pred ----------------------------------HHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhh
Q 029993 44 ----------------------------------VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLL 89 (184)
Q Consensus 44 ----------------------------------~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~ 89 (184)
..+-....+||+|+....|...+.. +. .+-.-.++|+||||++-
T Consensus 372 El~~~~~~~~~w~~i~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~-~~-~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 372 EIKQKQRYAAYFDQLKHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQD-DK-DFARNKVLVFDEAQKLM 449 (820)
T ss_pred hccCCccccHHHHHhhccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhh-cc-CCCCCCEEEEECcchhH
Confidence 0000012469999999988876654 22 25568899999999986
Q ss_pred c
Q 029993 90 D 90 (184)
Q Consensus 90 ~ 90 (184)
+
T Consensus 450 ~ 450 (820)
T PRK07246 450 L 450 (820)
T ss_pred H
Confidence 4
No 113
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=97.48 E-value=0.00034 Score=63.45 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=65.6
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhc-----CCccC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~-----~~~~~ 74 (184)
++-|++||.-||.|-++.+..+..++ ++++..+.|+.+.++. +.. ..+||.-||...+ .++++.. ...-.
T Consensus 123 ~v~vvT~neyLA~Rd~e~~~~~~~~L-Gl~vg~i~~~~~~~~r-~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~ 198 (796)
T PRK12906 123 GVHVVTVNEYLSSRDATEMGELYRWL-GLTVGLNLNSMSPDEK-RAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQ 198 (796)
T ss_pred CeEEEeccHHHHHhhHHHHHHHHHhc-CCeEEEeCCCCCHHHH-HHH--hcCCCeecCCccccccchhhccccchhhhhc
Confidence 57799999999999999999999998 8999998887665443 333 4689999999887 3444431 11124
Q ss_pred CCceEEEechhhHhh
Q 029993 75 RNLVILVLDEADRLL 89 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~ 89 (184)
+.+.+.|+||+|.++
T Consensus 199 r~~~~aIvDEvDSiL 213 (796)
T PRK12906 199 RPLNYAIVDEVDSIL 213 (796)
T ss_pred cCcceeeeccchhee
Confidence 677899999999986
No 114
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.46 E-value=0.00034 Score=62.65 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=65.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhc-----CCccC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~-----~~~~~ 74 (184)
++-|++||.-||.|-++.+..+..++ ++++..+.++.+.++ .+.. -.|||.-||...+ .++++.. ...-.
T Consensus 121 ~VhvvT~NdyLA~RDae~m~~ly~~L-GLsvg~i~~~~~~~e-rr~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~ 196 (764)
T PRK12326 121 RVHVITVNDYLARRDAEWMGPLYEAL-GLTVGWITEESTPEE-RRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVS 196 (764)
T ss_pred CeEEEcCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCCCHHH-HHHH--HcCCCEEcCCcccccccchhhhccChHhhcC
Confidence 47799999999999999999999998 899999888776543 3333 4689999999875 3333320 11124
Q ss_pred CCceEEEechhhHhh
Q 029993 75 RNLVILVLDEADRLL 89 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~ 89 (184)
+.+.+.|+||+|.++
T Consensus 197 R~~~faIVDEvDSiL 211 (764)
T PRK12326 197 PNPDVAIIDEADSVL 211 (764)
T ss_pred Cccceeeecchhhhe
Confidence 668899999999986
No 115
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.44 E-value=0.0015 Score=58.56 Aligned_cols=116 Identities=14% Similarity=0.216 Sum_probs=71.7
Q ss_pred EEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHH-c--CCcEeeechHHHHHHHHhcCC-ccCCCce
Q 029993 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE-E--GANLLIGTPGRLYDIMERMDV-LDFRNLV 78 (184)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~--~~~IlV~TP~~l~~~~~~~~~-~~~~~l~ 78 (184)
||+||+.- +.++++++.+.+|.+++...+|......+.+.... + +.|||++|-.....--.. +. +--.++.
T Consensus 452 LVVvPsST----leNWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdD-Rsflk~~~~n 526 (941)
T KOG0389|consen 452 LVVVPSST----LENWLREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDD-RSFLKNQKFN 526 (941)
T ss_pred EEEecchh----HHHHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHH-HHHHHhcccc
Confidence 79999766 45778888888899999999988766555554433 2 689999998544210000 00 0123566
Q ss_pred EEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC-chHHHHHHH
Q 029993 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-TEAVEELSK 126 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~-~~~v~~~~~ 126 (184)
++|+||+|.|=+.+ .+-.+.++. ++ ..+.++++.|. -+...++.+
T Consensus 527 ~viyDEgHmLKN~~-SeRy~~LM~-I~-An~RlLLTGTPLQNNL~ELiS 572 (941)
T KOG0389|consen 527 YVIYDEGHMLKNRT-SERYKHLMS-IN-ANFRLLLTGTPLQNNLKELIS 572 (941)
T ss_pred EEEecchhhhhccc-hHHHHHhcc-cc-ccceEEeeCCcccccHHHHHH
Confidence 99999999764432 232333222 22 35667777885 455555444
No 116
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.35 E-value=0.002 Score=59.68 Aligned_cols=129 Identities=22% Similarity=0.266 Sum_probs=88.1
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHc--CCcEeeechHHHHHHHHhc-CCccCC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEE--GANLLIGTPGRLYDIMERM-DVLDFR 75 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~--~~~IlV~TP~~l~~~~~~~-~~~~~~ 75 (184)
-|||.|-..|...+...+.+. ++....+.++....++. ..+.++ ..+|+--||+.+..--.-. ...++.
T Consensus 307 tvVISPL~SLm~DQv~~L~~~-----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~ 381 (941)
T KOG0351|consen 307 TVVISPLISLMQDQVTHLSKK-----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLY 381 (941)
T ss_pred eEEeccHHHHHHHHHHhhhhc-----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhcc
Confidence 489999999988886655332 68888888877765443 334444 6899999999886532210 122344
Q ss_pred C---ceEEEechhhHhhc--cchHHHHHHHH---HhCCCCceEEEEeeeCchHHHH--HHHHhCCCCeEEE
Q 029993 76 N---LVILVLDEADRLLD--MGFQKQISYII---SRLPKLRRTGLFSATQTEAVEE--LSKAGLRNPVRIE 136 (184)
Q Consensus 76 ~---l~~lVvDEaD~l~~--~~~~~~l~~i~---~~l~~~~q~i~~SAT~~~~v~~--~~~~~~~~~~~i~ 136 (184)
. +..+|+||||.... .+|+++.+.+- ...+ ..-++.++||-+..|.. +...-+++|..+.
T Consensus 382 ~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~ 451 (941)
T KOG0351|consen 382 ARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK 451 (941)
T ss_pred CCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec
Confidence 4 88999999999865 45888777643 3333 37899999999988776 3334556777544
No 117
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=97.33 E-value=0.0003 Score=64.00 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=78.8
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHh-cCCccCCCceEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNLVIL 80 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~-~~~~~~~~l~~l 80 (184)
++.+.|.-.-++.-...+..+.-.. ++.+....|+....... +.-++-|||=++=..+++. -..=.++.++++
T Consensus 272 ~llilp~vsiv~Ek~~~l~~~~~~~-G~~ve~y~g~~~p~~~~-----k~~sv~i~tiEkanslin~lie~g~~~~~g~v 345 (1008)
T KOG0950|consen 272 VLLILPYVSIVQEKISALSPFSIDL-GFPVEEYAGRFPPEKRR-----KRESVAIATIEKANSLINSLIEQGRLDFLGMV 345 (1008)
T ss_pred eeEecceeehhHHHHhhhhhhcccc-CCcchhhcccCCCCCcc-----cceeeeeeehHhhHhHHHHHHhcCCccccCcE
Confidence 3455555555555556666665555 66766655554433222 3348999999886555442 011236679999
Q ss_pred EechhhHhhccchHHHHHHHHHhC-----CCCceEEEEeeeCchHHHHHHHHhCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRL-----PKLRRTGLFSATQTEAVEELSKAGLRN 131 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l-----~~~~q~i~~SAT~~~~v~~~~~~~~~~ 131 (184)
|+||.|.+.+.+.+..++.++..+ ....|+|..|||+++. .+.+.|++.
T Consensus 346 vVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A 399 (1008)
T KOG0950|consen 346 VVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDA 399 (1008)
T ss_pred EEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhh
Confidence 999999999988888887776544 2345799999999874 344444543
No 118
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.32 E-value=0.0042 Score=49.71 Aligned_cols=84 Identities=15% Similarity=0.269 Sum_probs=63.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHH-HHHHhc---CCcc--CC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM---DVLD--FR 75 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~-~~~~~~---~~~~--~~ 75 (184)
+-|++.+.-||..=++.+..+...+ ++++....++...++. ... ..+||+-||...+- ++++.. +.-. .+
T Consensus 121 V~vvT~NdyLA~RD~~~~~~~y~~L-Glsv~~~~~~~~~~~r-~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r 196 (266)
T PF07517_consen 121 VHVVTSNDYLAKRDAEEMRPFYEFL-GLSVGIITSDMSSEER-REA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQR 196 (266)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHT-T--EEEEETTTEHHHH-HHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SS
T ss_pred cEEEeccHHHhhccHHHHHHHHHHh-hhccccCccccCHHHH-HHH--HhCcccccccchhhHHHHHHHHhhccchhccC
Confidence 4589999999999999999999999 9999999998875443 333 35799999999874 455431 1111 47
Q ss_pred CceEEEechhhHhh
Q 029993 76 NLVILVLDEADRLL 89 (184)
Q Consensus 76 ~l~~lVvDEaD~l~ 89 (184)
...++|+||+|.++
T Consensus 197 ~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 197 GFDFAIVDEVDSIL 210 (266)
T ss_dssp SSSEEEECTHHHHT
T ss_pred CCCEEEEeccceEE
Confidence 88999999999986
No 119
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=97.14 E-value=0.0031 Score=56.75 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=67.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcch------------HHHHHHHHHcCCcEeeechHHHHHHHHhc
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV------------KADVKKIEEEGANLLIGTPGRLYDIMERM 69 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~IlV~TP~~l~~~~~~~ 69 (184)
||||||.-- ..| +++++..-+|.+++..++|..+. +..+........+|+|+|-..+.-+ .
T Consensus 258 aLIVCP~Ti-i~q---W~~E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~- 330 (923)
T KOG0387|consen 258 ALIVCPATI-IHQ---WMKEFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--G- 330 (923)
T ss_pred eEEEccHHH-HHH---HHHHHHHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--C-
Confidence 799999643 334 44555445678999998876552 1111111123568999998765432 1
Q ss_pred CCccCCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC-chHHHHH
Q 029993 70 DVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-TEAVEEL 124 (184)
Q Consensus 70 ~~~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~-~~~v~~~ 124 (184)
..+.-....++|+||.|++-.. ...+......++. .+.+++|.|. -+.+.+|
T Consensus 331 d~l~~~~W~y~ILDEGH~IrNp--ns~islackki~T-~~RiILSGTPiQNnL~EL 383 (923)
T KOG0387|consen 331 DDLLGILWDYVILDEGHRIRNP--NSKISLACKKIRT-VHRIILSGTPIQNNLTEL 383 (923)
T ss_pred cccccccccEEEecCcccccCC--ccHHHHHHHhccc-cceEEeeCccccchHHHH
Confidence 3444556789999999998654 3344444555655 4555557774 4444433
No 120
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.0086 Score=49.36 Aligned_cols=101 Identities=22% Similarity=0.311 Sum_probs=68.6
Q ss_pred EEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEe
Q 029993 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVL 82 (184)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVv 82 (184)
.|-+|--+.+..++..++. .+++..+.+++|+++... ..+++|+|-..|+++-.. ..++++
T Consensus 148 ciASPRvDVclEl~~Rlk~---aF~~~~I~~Lyg~S~~~f--------r~plvVaTtHQLlrFk~a--------FD~liI 208 (441)
T COG4098 148 CIASPRVDVCLELYPRLKQ---AFSNCDIDLLYGDSDSYF--------RAPLVVATTHQLLRFKQA--------FDLLII 208 (441)
T ss_pred EEecCcccchHHHHHHHHH---hhccCCeeeEecCCchhc--------cccEEEEehHHHHHHHhh--------ccEEEE
Confidence 3556777777777666655 344788999999887432 258999999888886543 458999
Q ss_pred chhhHhhccchHHHHHH-HHHhCCCCceEEEEeeeCchHHHH
Q 029993 83 DEADRLLDMGFQKQISY-IISRLPKLRRTGLFSATQTEAVEE 123 (184)
Q Consensus 83 DEaD~l~~~~~~~~l~~-i~~~l~~~~q~i~~SAT~~~~v~~ 123 (184)
||+|.+-=.. ...+.. .-+..++..-+|.+|||.+++.++
T Consensus 209 DEVDAFP~~~-d~~L~~Av~~ark~~g~~IylTATp~k~l~r 249 (441)
T COG4098 209 DEVDAFPFSD-DQSLQYAVKKARKKEGATIYLTATPTKKLER 249 (441)
T ss_pred eccccccccC-CHHHHHHHHHhhcccCceEEEecCChHHHHH
Confidence 9999863222 222332 334445567789999999977554
No 121
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.05 E-value=0.0017 Score=59.34 Aligned_cols=84 Identities=18% Similarity=0.145 Sum_probs=64.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHH-HHHHhc-----CCccCC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLY-DIMERM-----DVLDFR 75 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~-~~~~~~-----~~~~~~ 75 (184)
+-|++++..||.+-++++..+-+++ ++++..+.++.+..+. +. .-.|||.-||...+- ++++.. ...-.+
T Consensus 120 VhVvT~NdyLA~RD~e~m~pvy~~L-GLsvg~i~~~~~~~er-r~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r 195 (870)
T CHL00122 120 VHIVTVNDYLAKRDQEWMGQIYRFL-GLTVGLIQEGMSSEER-KK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQR 195 (870)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHHHc-CCceeeeCCCCChHHH-HH--hcCCCCEecCCccccccchhhccCcChHHhhcc
Confidence 6799999999999999999999999 8999988777665443 33 257899999997652 344331 111246
Q ss_pred CceEEEechhhHhh
Q 029993 76 NLVILVLDEADRLL 89 (184)
Q Consensus 76 ~l~~lVvDEaD~l~ 89 (184)
.+.+.|+||+|.++
T Consensus 196 ~~~faIVDEvDSiL 209 (870)
T CHL00122 196 PFNYCIIDEVDSIL 209 (870)
T ss_pred ccceeeeecchhhe
Confidence 78899999999986
No 122
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.0026 Score=57.43 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=79.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHH---HHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
|||||||-..|-.|+.+.++... +.++..++++.+..+.... +.++...|+|||=..+. ..|++|
T Consensus 247 qvLvLVPEI~Ltpq~~~rf~~rF----g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF--------~Pf~~L 314 (730)
T COG1198 247 QVLVLVPEIALTPQLLARFKARF----GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF--------LPFKNL 314 (730)
T ss_pred EEEEEeccccchHHHHHHHHHHh----CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc--------Cchhhc
Confidence 68999999999999988888764 4778888888776555443 33578999999975333 248889
Q ss_pred eEEEechhhHhh-cc--chHHHHHH--HHHhCCCCceEEEEeeeCchHHHHHH
Q 029993 78 VILVLDEADRLL-DM--GFQKQISY--IISRLPKLRRTGLFSATQTEAVEELS 125 (184)
Q Consensus 78 ~~lVvDEaD~l~-~~--~~~~~l~~--i~~~l~~~~q~i~~SAT~~~~v~~~~ 125 (184)
..+|+||=|--- .+ +..-+.+. +++.-..++.+|+-|||.+-+....+
T Consensus 315 GLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 315 GLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANA 367 (730)
T ss_pred cEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhh
Confidence 999999988632 11 12222222 23333457999999999987655554
No 123
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=97.04 E-value=0.0024 Score=59.47 Aligned_cols=127 Identities=19% Similarity=0.166 Sum_probs=67.1
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+|||||+ .|..|....+.+.. ++....+.++. ...... ..+ ...+++|+|-+.+...-.....+.-....
T Consensus 202 vLIVvP~-sL~~QW~~El~~kF----~l~~~i~~~~~-~~~~~~~~~~pf-~~~~~vI~S~~~l~~~~~~~~~l~~~~wd 274 (956)
T PRK04914 202 VLILVPE-TLQHQWLVEMLRRF----NLRFSLFDEER-YAEAQHDADNPF-ETEQLVICSLDFLRRNKQRLEQALAAEWD 274 (956)
T ss_pred EEEEcCH-HHHHHHHHHHHHHh----CCCeEEEcCcc-hhhhcccccCcc-ccCcEEEEEHHHhhhCHHHHHHHhhcCCC
Confidence 6999998 78888888876532 34433333222 111000 001 24689999998776421100112223567
Q ss_pred EEEechhhHhhcc-chHHHHHHHHHhCC-CCceEEEEeeeCch-HHH-HHHHHhCCCCeEE
Q 029993 79 ILVLDEADRLLDM-GFQKQISYIISRLP-KLRRTGLFSATQTE-AVE-ELSKAGLRNPVRI 135 (184)
Q Consensus 79 ~lVvDEaD~l~~~-~~~~~l~~i~~~l~-~~~q~i~~SAT~~~-~v~-~~~~~~~~~~~~i 135 (184)
++|+||||++-.. +........++.+. +....+++|||... ... -+..--+-+|..+
T Consensus 275 lvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f 335 (956)
T PRK04914 275 LLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRF 335 (956)
T ss_pred EEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcC
Confidence 9999999998621 11111122333332 34578999999852 222 2333333355554
No 124
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.95 E-value=0.003 Score=57.89 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=65.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-----HHHHHh-cCCccCC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-----YDIMER-MDVLDFR 75 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-----~~~~~~-~~~~~~~ 75 (184)
+-|++++.-||..=.+++..+-.++ +++|..+.++.+..+ .+. .-.|||+.||+..+ .+.+.. ....-.+
T Consensus 129 VhVVTvNdYLA~RDae~m~~vy~~L-GLtvg~i~~~~~~~e-rr~--aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR 204 (939)
T PRK12902 129 VHVVTVNDYLARRDAEWMGQVHRFL-GLSVGLIQQDMSPEE-RKK--NYACDITYATNSELGFDYLRDNMATDISEVVQR 204 (939)
T ss_pred eEEEeCCHHHHHhHHHHHHHHHHHh-CCeEEEECCCCChHH-HHH--hcCCCeEEecCCcccccchhhhhcccccccccC
Confidence 6799999999999999999999999 999998877665433 233 36899999999987 333322 1122357
Q ss_pred CceEEEechhhHhh
Q 029993 76 NLVILVLDEADRLL 89 (184)
Q Consensus 76 ~l~~lVvDEaD~l~ 89 (184)
.+.+.||||+|.++
T Consensus 205 ~~~faIVDEvDSIL 218 (939)
T PRK12902 205 PFNYCVIDEVDSIL 218 (939)
T ss_pred ccceEEEeccccee
Confidence 88999999999986
No 125
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.87 E-value=0.02 Score=52.71 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=60.2
Q ss_pred cCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHh-hccch-HHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHH
Q 029993 50 EGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRL-LDMGF-QKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l-~~~~~-~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~ 127 (184)
..-.|-+.|.|.|+..+.+ ...++...++|+||||.= ++.++ ...+..++...+.+-.+|++|||+..+ -.+.
T Consensus 138 ~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~---rfs~ 212 (845)
T COG1643 138 PRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAE---RFSA 212 (845)
T ss_pred CCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHH---HHHH
Confidence 4568999999999999986 455899999999999972 33332 344556677777778999999999854 3455
Q ss_pred hCCCCeEEEE
Q 029993 128 GLRNPVRIEV 137 (184)
Q Consensus 128 ~~~~~~~i~~ 137 (184)
|++++-.+.+
T Consensus 213 ~f~~apvi~i 222 (845)
T COG1643 213 YFGNAPVIEI 222 (845)
T ss_pred HcCCCCEEEe
Confidence 6665433433
No 126
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.84 E-value=0.011 Score=54.75 Aligned_cols=39 Identities=28% Similarity=0.261 Sum_probs=28.4
Q ss_pred CCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhc
Q 029993 51 GANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLD 90 (184)
Q Consensus 51 ~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~ 90 (184)
.+||||+....|+..+...+.+. .+-.++|+||||+|.+
T Consensus 416 ~AdivItNHa~L~~~~~~~~~il-p~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 416 QAQILITNHAYLITRLVDNPELF-PSFRDLIIDEAHHLPD 454 (850)
T ss_pred cCCEEEecHHHHHHHhhcccccC-CCCCEEEEECcchHHH
Confidence 47999999998877664423322 3336999999999965
No 127
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=96.53 E-value=0.01 Score=54.10 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=81.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHH-------------HHHcCCcEeeechHHHHHHHHh
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK-------------IEEEGANLLIGTPGRLYDIMER 68 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~IlV~TP~~l~~~~~~ 68 (184)
.+.+.|+|.+..++++.+....+.. ++......|.......... ....-..+.++||.........
T Consensus 249 ~i~vlP~~t~ie~~~~r~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~ 327 (733)
T COG1203 249 VIYVLPFRTIIEDMYRRAKEIFGLF-SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVK 327 (733)
T ss_pred EEEEccHHHHHHHHHHHHHhhhccc-ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhcc
Confidence 4678999999999999999987654 2222212332221111000 0012345667777666553222
Q ss_pred cCCcc-CC--CceEEEechhhHhhccchHHHHHHHHHhCC-CCceEEEEeeeCchHHHHHHHHhCCCCeEEEEc
Q 029993 69 MDVLD-FR--NLVILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138 (184)
Q Consensus 69 ~~~~~-~~--~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~-~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (184)
..... +. .-..+|+||+|.+-+......+..++..+. ...-++++|||+|+-.++.....+.+...+...
T Consensus 328 ~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~ 401 (733)
T COG1203 328 GFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVEN 401 (733)
T ss_pred ccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecc
Confidence 11111 11 225789999998876533444444444443 357899999999999999988888776666654
No 128
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.52 E-value=0.0063 Score=55.10 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=74.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhc----CCccCCCc
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM----DVLDFRNL 77 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~----~~~~~~~l 77 (184)
+|+|+=.+.|..|.+..+..+. |.-..+-...+... ...++|.|+|-.++..-+.+. ..+.....
T Consensus 218 VLFLaDR~~Lv~QA~~af~~~~---P~~~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~F 286 (875)
T COG4096 218 VLFLADRNALVDQAYGAFEDFL---PFGTKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFF 286 (875)
T ss_pred eeEEechHHHHHHHHHHHHHhC---CCccceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCce
Confidence 5899999999999999887764 44444444433321 124799999999999888762 24556678
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhC-CCCeEE
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL-RNPVRI 135 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~-~~~~~i 135 (184)
.++|+||||+=.- ..-+.|+.++....|.+ +||+...+..---.|+ .+|+..
T Consensus 287 DlIvIDEaHRgi~----~~~~~I~dYFdA~~~gL--TATP~~~~d~~T~~~F~g~Pt~~ 339 (875)
T COG4096 287 DLIVIDEAHRGIY----SEWSSILDYFDAATQGL--TATPKETIDRSTYGFFNGEPTYA 339 (875)
T ss_pred eEEEechhhhhHH----hhhHHHHHHHHHHHHhh--ccCcccccccccccccCCCccee
Confidence 8999999998543 33336666664433333 7777654433333333 444433
No 129
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.34 E-value=0.019 Score=54.14 Aligned_cols=105 Identities=17% Similarity=0.252 Sum_probs=65.2
Q ss_pred EEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH-HHH-HcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK-KIE-EEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~-~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
||+|||.-+- -..-.++++| |++++...+|.-......+ .+. .+..||.|++-..+..-+. .+.-++.+|+
T Consensus 669 LIVVpTsviL-nWEMElKRwc---PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~---AFkrkrWqyL 741 (1958)
T KOG0391|consen 669 LIVVPTSVIL-NWEMELKRWC---PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT---AFKRKRWQYL 741 (1958)
T ss_pred eEEeechhhh-hhhHHHhhhC---CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH---HHHhhcccee
Confidence 7999998643 3445566665 6889988888654333322 222 1347999999877766443 3445788999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~ 117 (184)
|+|||+.+=+ |...-...+-.+.. .|.++++.|.
T Consensus 742 vLDEaqnIKn--fksqrWQAllnfns-qrRLLLtgTP 775 (1958)
T KOG0391|consen 742 VLDEAQNIKN--FKSQRWQALLNFNS-QRRLLLTGTP 775 (1958)
T ss_pred ehhhhhhhcc--hhHHHHHHHhccch-hheeeecCCc
Confidence 9999999743 34333333334433 4455556663
No 130
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=96.22 E-value=0.068 Score=49.53 Aligned_cols=84 Identities=18% Similarity=0.132 Sum_probs=60.4
Q ss_pred CCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHh-hccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhC
Q 029993 51 GANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRL-LDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (184)
Q Consensus 51 ~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l-~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~ 129 (184)
...++.||-|.|++.+.. .-.++++..+|+||+|.= .+.+|.--+..-+-...+.-++|++|||+. .+..+.|+
T Consensus 264 ~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~d---ae~fs~YF 338 (924)
T KOG0920|consen 264 ETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLD---AELFSDYF 338 (924)
T ss_pred ceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecc---hHHHHHHh
Confidence 367999999999998875 556899999999999963 223444433333333346789999999999 44667777
Q ss_pred CCCeEEEEcc
Q 029993 130 RNPVRIEVRA 139 (184)
Q Consensus 130 ~~~~~i~~~~ 139 (184)
+.+-.+.+..
T Consensus 339 ~~~pvi~i~g 348 (924)
T KOG0920|consen 339 GGCPVITIPG 348 (924)
T ss_pred CCCceEeecC
Confidence 7766666544
No 131
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=96.13 E-value=0.045 Score=45.85 Aligned_cols=123 Identities=18% Similarity=0.198 Sum_probs=83.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHH----HH--HcCCcEeeechHHHHHHH---Hh-cC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK----IE--EEGANLLIGTPGRLYDIM---ER-MD 70 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----l~--~~~~~IlV~TP~~l~~~~---~~-~~ 70 (184)
++||++|--.|....--+++.|+ +....+...++.+ +..+ +. +....++--||+.+...- .. .+
T Consensus 136 ~alvi~plislmedqil~lkqlg-----i~as~lnansske-~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek 209 (695)
T KOG0353|consen 136 FALVICPLISLMEDQILQLKQLG-----IDASMLNANSSKE-EAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK 209 (695)
T ss_pred ceEeechhHHHHHHHHHHHHHhC-----cchhhccCcccHH-HHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH
Confidence 58999999999998888888874 4444444333332 2222 11 235689999999985422 11 24
Q ss_pred CccCCCceEEEechhhHhhc--cchHHHHHH--HHHhCCCCceEEEEeeeCchHHHHHHHHhC
Q 029993 71 VLDFRNLVILVLDEADRLLD--MGFQKQISY--IISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (184)
Q Consensus 71 ~~~~~~l~~lVvDEaD~l~~--~~~~~~l~~--i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~ 129 (184)
.+....++.+.+||+|.-.. .+|+++... |+++--+..-++.++||-+++|..=++..+
T Consensus 210 a~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il 272 (695)
T KOG0353|consen 210 ALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDIL 272 (695)
T ss_pred HhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHH
Confidence 56678899999999998653 357766654 455555678899999999988876555443
No 132
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.12 E-value=0.045 Score=51.40 Aligned_cols=107 Identities=14% Similarity=0.177 Sum_probs=70.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHH-cCCcEeeechHHHHHHHHhcCCccCCCc-eE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE-EGANLLIGTPGRLYDIMERMDVLDFRNL-VI 79 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~IlV~TP~~l~~~~~~~~~~~~~~l-~~ 79 (184)
+++||=-++|-.|+.+.+..++....... ...+ ..+...+.+ ..-.|+|+|=..+-............+- -.
T Consensus 306 v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-----~~~s-~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~iv 379 (962)
T COG0610 306 VLFVVDRKDLDDQTSDEFQSFGKVAFNDP-----KAES-TSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVV 379 (962)
T ss_pred EEEEechHHHHHHHHHHHHHHHHhhhhcc-----cccC-HHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEE
Confidence 58899999999999999999976541111 2223 334444334 3348999999999988876212223333 36
Q ss_pred EEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 80 lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
+|+||||+- .++..-..+-..++ ++..+.|++|.-
T Consensus 380 vI~DEaHRS---Q~G~~~~~~~~~~~-~a~~~gFTGTPi 414 (962)
T COG0610 380 VIIDEAHRS---QYGELAKLLKKALK-KAIFIGFTGTPI 414 (962)
T ss_pred EEEechhhc---cccHHHHHHHHHhc-cceEEEeeCCcc
Confidence 789999984 34444444444444 489999999963
No 133
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=96.11 E-value=0.0099 Score=45.90 Aligned_cols=43 Identities=30% Similarity=0.544 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechh
Q 029993 42 ADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEA 85 (184)
Q Consensus 42 ~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEa 85 (184)
++.....++..++-||||+|+-+++++ +.++.+.++++|+|=.
T Consensus 187 ~~~k~~k~~~v~~gIgTp~Ri~~lv~~-~~f~~~~lk~iIlD~s 229 (271)
T KOG3089|consen 187 AQVKLLKKRVVHLGIGTPGRIKELVKQ-GGFNLSPLKFIILDWS 229 (271)
T ss_pred HHHHHHhhcceeEeecCcHHHHHHHHh-cCCCCCcceeEEeecc
Confidence 444445556789999999999999999 7799999999999854
No 134
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=95.93 E-value=0.045 Score=51.73 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=73.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+||+||+- |+-....++.++ +|-+++...+|+.......+.-. ++.+|+|++-+.+.+-+.. +.=.+..|+|
T Consensus 1034 SLIVCPsT-LtGHW~~E~~kf---~pfL~v~~yvg~p~~r~~lR~q~-~~~~iiVtSYDv~RnD~d~---l~~~~wNYcV 1105 (1549)
T KOG0392|consen 1034 SLIVCPST-LTGHWKSEVKKF---FPFLKVLQYVGPPAERRELRDQY-KNANIIVTSYDVVRNDVDY---LIKIDWNYCV 1105 (1549)
T ss_pred eEEECCch-hhhHHHHHHHHh---cchhhhhhhcCChHHHHHHHhhc-cccceEEeeHHHHHHHHHH---HHhcccceEE
Confidence 68999964 455555555554 54567777777665433332221 4589999999877532221 1112345999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC-chH---HHHHHHHhCCC
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-TEA---VEELSKAGLRN 131 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~-~~~---v~~~~~~~~~~ 131 (184)
+||-|.+-. -...+...++++..+++.|+ |.|. -++ .+.+..+.|+.
T Consensus 1106 LDEGHVikN--~ktkl~kavkqL~a~hRLIL-SGTPIQNnvleLWSLFdFLMPG 1156 (1549)
T KOG0392|consen 1106 LDEGHVIKN--SKTKLTKAVKQLRANHRLIL-SGTPIQNNVLELWSLFDFLMPG 1156 (1549)
T ss_pred ecCcceecc--hHHHHHHHHHHHhhcceEEe-eCCCcccCHHHHHHHHHHhccc
Confidence 999998743 36667777888877666666 7775 344 44556666654
No 135
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.92 E-value=0.011 Score=52.66 Aligned_cols=124 Identities=18% Similarity=0.164 Sum_probs=69.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHH----HHHhcCCc-cCC-
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYD----IMERMDVL-DFR- 75 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~----~~~~~~~~-~~~- 75 (184)
-|||||-+- ..|.+..+.+-.... .++|++.+|....+-..+.+ ...||+|+|-..+.. =....+.. .+-
T Consensus 386 TLII~PaSl-i~qW~~Ev~~rl~~n-~LsV~~~HG~n~r~i~~~~L--~~YDvViTTY~lva~~~~~e~~~~~~~spL~~ 461 (901)
T KOG4439|consen 386 TLIICPASL-IHQWEAEVARRLEQN-ALSVYLYHGPNKREISAKEL--RKYDVVITTYNLVANKPDDELEEGKNSSPLAR 461 (901)
T ss_pred eEEeCcHHH-HHHHHHHHHHHHhhc-ceEEEEecCCccccCCHHHH--hhcceEEEeeeccccCCchhhhcccCccHHHH
Confidence 389999654 455555554433332 58999988877544455556 468999999865544 11110111 122
Q ss_pred -CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC-chHHHHHHH--HhCCCC
Q 029993 76 -NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-TEAVEELSK--AGLRNP 132 (184)
Q Consensus 76 -~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~-~~~v~~~~~--~~~~~~ 132 (184)
....+|+||||.+-+.. ..-...+..+...++ +.+|+|. -++.+.+.. +|++.|
T Consensus 462 I~W~RVILDEAH~IrN~~--tq~S~AVC~L~a~~R-WclTGTPiqNn~~DvysLlrFLr~~ 519 (901)
T KOG4439|consen 462 IAWSRVILDEAHNIRNSN--TQCSKAVCKLSAKSR-WCLTGTPIQNNLWDVYSLLRFLRCP 519 (901)
T ss_pred hhHHHhhhhhhhhhcccc--hhHHHHHHHHhhcce-eecccCccccchhHHHHHHHHhcCC
Confidence 33578999999986542 222333444544444 4556664 444343332 345544
No 136
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.91 E-value=0.028 Score=51.74 Aligned_cols=84 Identities=13% Similarity=0.071 Sum_probs=67.0
Q ss_pred CCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCch------HHHHH
Q 029993 51 GANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE------AVEEL 124 (184)
Q Consensus 51 ~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~------~v~~~ 124 (184)
...|+++||..|..-+-. +.++++.+..+|+||||++.+..-...+.++.+.-.+..-+.+|||.... .+...
T Consensus 7 ~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~v 85 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETK 85 (814)
T ss_pred cCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHH
Confidence 458999999887655555 78999999999999999999888888898999988888889999999864 45665
Q ss_pred HHHhCCCCeEE
Q 029993 125 SKAGLRNPVRI 135 (184)
Q Consensus 125 ~~~~~~~~~~i 135 (184)
++...-.-+.+
T Consensus 86 mk~L~i~~v~l 96 (814)
T TIGR00596 86 MRNLFLRHVYL 96 (814)
T ss_pred HHHhCcCeEEE
Confidence 55544333433
No 137
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.78 E-value=0.056 Score=51.62 Aligned_cols=78 Identities=12% Similarity=0.195 Sum_probs=60.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH---HHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
|++|++|+.+-+..+.+.+.++ +|+.++..++|+.+..+. +....++..+|+|||- +.. ..+|+.++
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~---~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd--Iie-----rGIDIP~v 880 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAEL---VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT--IIE-----TGIDIPTA 880 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHh---CCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc--hhh-----cccccccC
Confidence 5789999999888887777665 457889999998765443 2334467899999996 222 68999999
Q ss_pred eEEEechhhHh
Q 029993 78 VILVLDEADRL 88 (184)
Q Consensus 78 ~~lVvDEaD~l 88 (184)
.++|++.+|.+
T Consensus 881 ~~VIi~~ad~f 891 (1147)
T PRK10689 881 NTIIIERADHF 891 (1147)
T ss_pred CEEEEecCCCC
Confidence 99999999863
No 138
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=95.72 E-value=0.013 Score=54.65 Aligned_cols=77 Identities=23% Similarity=0.058 Sum_probs=48.2
Q ss_pred CCcEeeechHHHHHHHHhc--CCccCC--C--ceEEEechhhHhhccchHHHHHHHHHhCC-CCceEEEEeeeCchHHHH
Q 029993 51 GANLLIGTPGRLYDIMERM--DVLDFR--N--LVILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEE 123 (184)
Q Consensus 51 ~~~IlV~TP~~l~~~~~~~--~~~~~~--~--l~~lVvDEaD~l~~~~~~~~l~~i~~~l~-~~~q~i~~SAT~~~~v~~ 123 (184)
...++|||+..++...... +...+. . =+.||+||+|..-.. ....+.++++-+. -...++++|||+|+.+.+
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPALVK 640 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH
Confidence 3689999999998876321 122211 2 258999999975332 3344555554322 247889999999988554
Q ss_pred -HHHHh
Q 029993 124 -LSKAG 128 (184)
Q Consensus 124 -~~~~~ 128 (184)
+.+.|
T Consensus 641 ~L~~Ay 646 (1110)
T TIGR02562 641 TLFRAY 646 (1110)
T ss_pred HHHHHH
Confidence 44444
No 139
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=95.67 E-value=0.22 Score=45.58 Aligned_cols=118 Identities=12% Similarity=0.115 Sum_probs=77.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+|+++--+.|+.+....++.- +++++....-.++.... ....+-++..-+.|.+. ..-.+++-+++|
T Consensus 81 VLvVShRrSL~~sL~~rf~~~--~l~gFv~Y~d~~~~~i~-------~~~~~rLivqIdSL~R~----~~~~l~~yDvVI 147 (824)
T PF02399_consen 81 VLVVSHRRSLTKSLAERFKKA--GLSGFVNYLDSDDYIID-------GRPYDRLIVQIDSLHRL----DGSLLDRYDVVI 147 (824)
T ss_pred EEEEEhHHHHHHHHHHHHhhc--CCCcceeeecccccccc-------ccccCeEEEEehhhhhc----ccccccccCEEE
Confidence 578888899999998877764 23345544333222211 12346666666677664 223466788999
Q ss_pred echhhHhhccchHHHHH------H-HHHhCCCCceEEEEeeeCchHHHHHHHHhCCCC
Q 029993 82 LDEADRLLDMGFQKQIS------Y-IISRLPKLRRTGLFSATQTEAVEELSKAGLRNP 132 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~------~-i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~ 132 (184)
+||+...+.+-|.+.++ . +...+.+...+|++-|+++...-+|...+-++-
T Consensus 148 IDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~Rp~~ 205 (824)
T PF02399_consen 148 IDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCRPDE 205 (824)
T ss_pred EehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhCCCC
Confidence 99999988763333322 2 233335567899999999999999999976643
No 140
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.36 E-value=0.095 Score=49.05 Aligned_cols=78 Identities=13% Similarity=0.221 Sum_probs=61.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
|++|++|+.+-+..+++.++++ +|++++..++|+.+..+.. ....++..+|+|||- + +. ..+|+.++
T Consensus 662 qv~if~n~i~~~e~l~~~L~~~---~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~--i---ie--~GIDIp~v 731 (926)
T TIGR00580 662 QVFYVHNRIESIEKLATQLREL---VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT--I---IE--TGIDIPNA 731 (926)
T ss_pred eEEEEECCcHHHHHHHHHHHHh---CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC--h---hh--cccccccC
Confidence 5789999999998888877775 4578999999987654333 334457899999997 2 22 68999999
Q ss_pred eEEEechhhHh
Q 029993 78 VILVLDEADRL 88 (184)
Q Consensus 78 ~~lVvDEaD~l 88 (184)
.++|++.+|..
T Consensus 732 ~~VIi~~a~~~ 742 (926)
T TIGR00580 732 NTIIIERADKF 742 (926)
T ss_pred CEEEEecCCCC
Confidence 99999999863
No 141
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=95.14 E-value=0.054 Score=44.02 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=71.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhc----C-------
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM----D------- 70 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~----~------- 70 (184)
+|.+..+-+|-....+-++.++.. .+.+..+..-...+ .. .-+-.||.+|-..|..--... .
T Consensus 94 ~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~~~~~~--~~---~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 94 AVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNKFKYGD--II---RLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred eEEEECChhhhhHHHHHHHHhCCC--cccceechhhccCc--CC---CCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 688999999999999999998754 34443333211100 00 123358888877665543210 0
Q ss_pred C--ccCCCceEEEechhhHhhccc--------hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHH
Q 029993 71 V--LDFRNLVILVLDEADRLLDMG--------FQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (184)
Q Consensus 71 ~--~~~~~l~~lVvDEaD~l~~~~--------~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~ 125 (184)
+ -+++ ..+|+||+|.+-+.. -...+..+-+.+|+ .+++.+|||-..+.+.++
T Consensus 167 W~g~dfd--gvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~-ARvvY~SATgasep~Nma 228 (303)
T PF13872_consen 167 WCGEDFD--GVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPN-ARVVYASATGASEPRNMA 228 (303)
T ss_pred HHhcCCC--ceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCC-CcEEEecccccCCCceee
Confidence 1 1233 389999999985542 23456667777765 559999999987766653
No 142
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=94.92 E-value=0.11 Score=49.50 Aligned_cols=108 Identities=19% Similarity=0.319 Sum_probs=76.6
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
|+.++|..+.+...++...+-.+..-+.++..+.|..+.+... + ...+|+|+||.+...+ . +...+.++|
T Consensus 1189 ~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl--~--~~~~vii~tpe~~d~l-q-----~iQ~v~l~i 1258 (1674)
T KOG0951|consen 1189 AVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKL--L--QKGQVIISTPEQWDLL-Q-----SIQQVDLFI 1258 (1674)
T ss_pred EEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHH--h--hhcceEEechhHHHHH-h-----hhhhcceEe
Confidence 6889999999987776655443433478888887776654332 2 3569999999987765 1 467788999
Q ss_pred echhhHhhccc------hHHHHHHHHHhCCCCceEEEEeeeCchH
Q 029993 82 LDEADRLLDMG------FQKQISYIISRLPKLRRTGLFSATQTEA 120 (184)
Q Consensus 82 vDEaD~l~~~~------~~~~l~~i~~~l~~~~q~i~~SAT~~~~ 120 (184)
.||+|.+-+.. -.. ++.|.+++-++.+++.+|..+.+.
T Consensus 1259 ~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana 1302 (1674)
T KOG0951|consen 1259 VDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANA 1302 (1674)
T ss_pred eehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccc
Confidence 99999765321 112 566677777778888888877654
No 143
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=94.75 E-value=0.77 Score=41.55 Aligned_cols=113 Identities=11% Similarity=0.257 Sum_probs=72.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH---HHHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
++|+++|++.|..+.+.+.+. ++.+..++|+....+. ...+..+..+|+|||- .+. .++++.+++
T Consensus 445 vLIf~~tk~~ae~L~~~L~~~-----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~-----~L~--rGfDiP~v~ 512 (655)
T TIGR00631 445 VLVTTLTKKMAEDLTDYLKEL-----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN-----LLR--EGLDLPEVS 512 (655)
T ss_pred EEEEECCHHHHHHHHHHHhhh-----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC-----hhc--CCeeeCCCc
Confidence 789999999999999888875 5677778777554333 2334456789999993 222 689999999
Q ss_pred EEEechhhHhhccchHHHHHHHHHhCCC--CceEEEEeeeCchHHHHHHH
Q 029993 79 ILVLDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~~~l~~i~~~l~~--~~q~i~~SAT~~~~v~~~~~ 126 (184)
++|+-++|..--......+...+-+..+ ....+++-...+..+.....
T Consensus 513 lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 513 LVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred EEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHH
Confidence 9999888874211122223233322222 23466665666655444333
No 144
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.65 E-value=0.61 Score=42.36 Aligned_cols=94 Identities=16% Similarity=0.227 Sum_probs=59.2
Q ss_pred HHHHhhhcCCCceEEEEECCcc-----hHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhcc-
Q 029993 18 VAQPFISTLPDVKSMLLVGGVE-----VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDM- 91 (184)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~- 91 (184)
..+.+.+.+|+.++..+.++.. .+.......++.++|+|||+. +. +.+|+.++.++++-.||..+..
T Consensus 442 ~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~-----ia--kG~d~p~v~lV~il~aD~~l~~p 514 (679)
T PRK05580 442 LEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQM-----LA--KGHDFPNVTLVGVLDADLGLFSP 514 (679)
T ss_pred HHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChh-----hc--cCCCCCCcCEEEEEcCchhccCC
Confidence 3444444567888888887653 223345555568999999994 22 6789999999999999988764
Q ss_pred chH------HHHHHHHHhCC---CCceEEEEeeeCc
Q 029993 92 GFQ------KQISYIISRLP---KLRRTGLFSATQT 118 (184)
Q Consensus 92 ~~~------~~l~~i~~~l~---~~~q~i~~SAT~~ 118 (184)
+|. ..+.....+.+ +.-..++.|....
T Consensus 515 dfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 515 DFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred ccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 221 22333333332 2446666666554
No 145
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.61 E-value=0.38 Score=43.69 Aligned_cols=81 Identities=16% Similarity=0.309 Sum_probs=54.9
Q ss_pred CEEEEeccHHH-----HHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCc
Q 029993 1 MGMIISPTREL-----SAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVL 72 (184)
Q Consensus 1 ~alIl~PtreL-----a~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~ 72 (184)
+++|++|+.+- ........+.+.+.+++.++..++|+.+..+... ...++..+|||||. +.. ..+
T Consensus 473 q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~--vie-----~Gi 545 (681)
T PRK10917 473 QAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT--VIE-----VGV 545 (681)
T ss_pred cEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc--cee-----eCc
Confidence 57899996542 1223344455555565688999999876544332 33346789999996 222 578
Q ss_pred cCCCceEEEechhhHh
Q 029993 73 DFRNLVILVLDEADRL 88 (184)
Q Consensus 73 ~~~~l~~lVvDEaD~l 88 (184)
|+.++.++|+..+++.
T Consensus 546 Dip~v~~VIi~~~~r~ 561 (681)
T PRK10917 546 DVPNATVMVIENAERF 561 (681)
T ss_pred ccCCCcEEEEeCCCCC
Confidence 9999999999998863
No 146
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.51 E-value=0.42 Score=42.94 Aligned_cols=81 Identities=20% Similarity=0.337 Sum_probs=54.4
Q ss_pred CEEEEeccHHHH-----HHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCc
Q 029993 1 MGMIISPTRELS-----AQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVL 72 (184)
Q Consensus 1 ~alIl~PtreLa-----~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~ 72 (184)
+++|++|+.+-+ ......++.+...+++.++..++|+.+..+.. ....++..+|||||. +. . ..+
T Consensus 450 q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~--vi---e--~Gv 522 (630)
T TIGR00643 450 QAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT--VI---E--VGV 522 (630)
T ss_pred cEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc--ee---e--cCc
Confidence 578899976421 22233334444444678999999987654332 333446799999997 22 2 688
Q ss_pred cCCCceEEEechhhHh
Q 029993 73 DFRNLVILVLDEADRL 88 (184)
Q Consensus 73 ~~~~l~~lVvDEaD~l 88 (184)
|+.++..+|+..++..
T Consensus 523 DiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 523 DVPNATVMVIEDAERF 538 (630)
T ss_pred ccCCCcEEEEeCCCcC
Confidence 9999999999888863
No 147
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=94.51 E-value=0.9 Score=40.63 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=54.3
Q ss_pred CCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHh-hccc-hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHh
Q 029993 51 GANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRL-LDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (184)
Q Consensus 51 ~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l-~~~~-~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~ 128 (184)
.-.|...|-|.|++-+-. ...+++-..+|+||||.= +..+ ....++.+++.- ++-.+|+.|||+.. +..+.|
T Consensus 140 ~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIimSATlda---~kfS~y 213 (674)
T KOG0922|consen 140 DTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLIIMSATLDA---EKFSEY 213 (674)
T ss_pred ceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEEEEeeeecH---HHHHHH
Confidence 457999999999887654 456888999999999962 1111 223333433332 34589999999984 356667
Q ss_pred CCCCeEEEEc
Q 029993 129 LRNPVRIEVR 138 (184)
Q Consensus 129 ~~~~~~i~~~ 138 (184)
+.+...+.+.
T Consensus 214 F~~a~i~~i~ 223 (674)
T KOG0922|consen 214 FNNAPILTIP 223 (674)
T ss_pred hcCCceEeec
Confidence 7764444443
No 148
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=94.22 E-value=0.21 Score=43.47 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=71.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHh-------cCCccC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-------MDVLDF 74 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~-------~~~~~~ 74 (184)
||+|+.+---+.|....+..++. +.+-.++.++++... ....++.|+|+|-..+..--+. +..+.-
T Consensus 348 clvLcts~VSVeQWkqQfk~wst-i~d~~i~rFTsd~Ke------~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~ 420 (776)
T KOG1123|consen 348 CLVLCTSAVSVEQWKQQFKQWST-IQDDQICRFTSDAKE------RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG 420 (776)
T ss_pred EEEEecCccCHHHHHHHHHhhcc-cCccceEEeeccccc------cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhc
Confidence 79999999999999999988864 334555655554331 1246889999998665332111 011223
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchH
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~ 120 (184)
....++++||+|.+-...|+.-+.-+-. +-.+.++||+-.+
T Consensus 421 ~EWGllllDEVHvvPA~MFRRVlsiv~a-----HcKLGLTATLvRE 461 (776)
T KOG1123|consen 421 REWGLLLLDEVHVVPAKMFRRVLSIVQA-----HCKLGLTATLVRE 461 (776)
T ss_pred CeeeeEEeehhccchHHHHHHHHHHHHH-----HhhccceeEEeec
Confidence 5678999999999877767766554443 3347889998544
No 149
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.10 E-value=0.33 Score=41.25 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=52.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
++||.++|++-|..+++.+... ++++..++|+....++. ....++..+|||||. .+. ..+|+.++
T Consensus 257 ~~lVF~~t~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~--rGiDip~v 324 (423)
T PRK04837 257 RAIIFANTKHRCEEIWGHLAAD-----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAA--RGLHIPAV 324 (423)
T ss_pred eEEEEECCHHHHHHHHHHHHhC-----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhh--cCCCcccc
Confidence 4799999999999988877653 67888889887654443 333457899999995 222 67899999
Q ss_pred eEEEec
Q 029993 78 VILVLD 83 (184)
Q Consensus 78 ~~lVvD 83 (184)
.++|.-
T Consensus 325 ~~VI~~ 330 (423)
T PRK04837 325 THVFNY 330 (423)
T ss_pred CEEEEe
Confidence 987643
No 150
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.08 E-value=0.45 Score=42.29 Aligned_cols=72 Identities=13% Similarity=0.193 Sum_probs=54.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
++||+|+|++.|.++++.+.+. ++++..++|+....+... ...++..+|||+|. .+. ..+|+.++
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~a--rGIDip~V 326 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAA--RGLHIDGV 326 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhh--cCCCccCC
Confidence 4799999999999998888764 578889998876544332 33346789999996 222 57899999
Q ss_pred eEEEech
Q 029993 78 VILVLDE 84 (184)
Q Consensus 78 ~~lVvDE 84 (184)
.++|.-+
T Consensus 327 ~~VInyd 333 (572)
T PRK04537 327 KYVYNYD 333 (572)
T ss_pred CEEEEcC
Confidence 9887544
No 151
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=93.91 E-value=0.44 Score=44.70 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=64.3
Q ss_pred EEEEeccHHHHHHHHHHHHH--h---hh-cCCC--ceEEEEECCc-------chHHHHHHHHHc------CCcEeeechH
Q 029993 2 GMIISPTRELSAQIYHVAQP--F---IS-TLPD--VKSMLLVGGV-------EVKADVKKIEEE------GANLLIGTPG 60 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~--l---~~-~~~~--~~~~~~~~~~-------~~~~~~~~l~~~------~~~IlV~TP~ 60 (184)
.||+||+.+.-..+.+.+.. . .+ .+.+ ++.....++. ......+.-... ..+|+|.|-+
T Consensus 92 fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niq 171 (986)
T PRK15483 92 FIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAG 171 (986)
T ss_pred EEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehH
Confidence 58999999988888876651 1 11 1223 3444443322 223333332222 5799999999
Q ss_pred HHHHHHH----------hcC--Cc-cCCCce-EEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCch
Q 029993 61 RLYDIME----------RMD--VL-DFRNLV-ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (184)
Q Consensus 61 ~l~~~~~----------~~~--~~-~~~~l~-~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~ 119 (184)
.+..-.. ... .+ .+...+ ++|+||.|++-.. ......| ..+.+.+ ++.||||++.
T Consensus 172 a~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~--~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 172 MLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD--NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred HhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 8865211 001 11 234444 7799999998442 1222344 5555444 4669999986
No 152
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.49 E-value=0.83 Score=40.04 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=49.5
Q ss_pred HHHHHHhhhcCCCceEEEEECCcch-----HHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhc
Q 029993 16 YHVAQPFISTLPDVKSMLLVGGVEV-----KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLD 90 (184)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~ 90 (184)
.+..+.+.+.+|+.++..+.++... +.......++.++|+|||+. +. +.+++.++..+++=.+|..+.
T Consensus 272 e~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~-----i~--kG~d~~~v~lV~vl~aD~~l~ 344 (505)
T TIGR00595 272 EQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQM-----IA--KGHHFPNVTLVGVLDADSGLH 344 (505)
T ss_pred HHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcc-----cc--cCCCCCcccEEEEEcCccccc
Confidence 3344444455778899888887542 23345555668999999994 22 678999999999999998765
Q ss_pred c
Q 029993 91 M 91 (184)
Q Consensus 91 ~ 91 (184)
.
T Consensus 345 ~ 345 (505)
T TIGR00595 345 S 345 (505)
T ss_pred C
Confidence 4
No 153
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=93.42 E-value=0.26 Score=45.56 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=62.8
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhcCC-----ccCC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDV-----LDFR 75 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~~~-----~~~~ 75 (184)
+-|++.+--||..=.+++..+-.++ ++++.....+.+..+. +.. -.|||.-||...+ .++++..=. .-.+
T Consensus 122 VhVVTvNdYLA~RDae~mg~vy~fL-GLsvG~i~~~~~~~~r-r~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR 197 (925)
T PRK12903 122 VIVSTVNEYLAERDAEEMGKVFNFL-GLSVGINKANMDPNLK-REA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQR 197 (925)
T ss_pred eEEEecchhhhhhhHHHHHHHHHHh-CCceeeeCCCCChHHH-HHh--ccCCCeeecCcccchhhhhhcccccHHHhcCc
Confidence 4578888999999999999998888 9999888776554433 232 5799999999886 445543111 1147
Q ss_pred CceEEEechhhHhh
Q 029993 76 NLVILVLDEADRLL 89 (184)
Q Consensus 76 ~l~~lVvDEaD~l~ 89 (184)
.+.|.|+||+|.++
T Consensus 198 ~~~faIVDEVDSIL 211 (925)
T PRK12903 198 GLNFCLIDEVDSIL 211 (925)
T ss_pred ccceeeeccchhee
Confidence 78899999999986
No 154
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=92.99 E-value=0.81 Score=39.38 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=52.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
++||+++|++-|..+++.+.+. ++++..++|+.+..+... ...++..+|||||- .+. ..+|+.++
T Consensus 247 ~~lVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~--rGiDip~v 314 (456)
T PRK10590 247 QVLVFTRTKHGANHLAEQLNKD-----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAA--RGLDIEEL 314 (456)
T ss_pred cEEEEcCcHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHh--cCCCcccC
Confidence 4799999999999998877653 577888898876544432 33346789999996 122 57899999
Q ss_pred eEEEe
Q 029993 78 VILVL 82 (184)
Q Consensus 78 ~~lVv 82 (184)
.++|.
T Consensus 315 ~~VI~ 319 (456)
T PRK10590 315 PHVVN 319 (456)
T ss_pred CEEEE
Confidence 98873
No 155
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.83 E-value=0.77 Score=40.29 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=53.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
+++|++.|+..|..+...+... ++++..++|+....+..+ ...++..+|+|||--- . +.+|+.++
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~-----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDva------a-RGiDi~~v 342 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR-----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA------A-RGLDIPDV 342 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC-----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechh------h-ccCCcccc
Confidence 3899999999999988777765 588999999977554433 3445789999999732 2 78888888
Q ss_pred eEEE
Q 029993 78 VILV 81 (184)
Q Consensus 78 ~~lV 81 (184)
.++|
T Consensus 343 ~~Vi 346 (513)
T COG0513 343 SHVI 346 (513)
T ss_pred ceeE
Confidence 8875
No 156
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=92.70 E-value=0.57 Score=42.57 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=65.3
Q ss_pred EEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHH--------HHcCCcEeeechHHHHHHHHhcCCccC
Q 029993 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI--------EEEGANLLIGTPGRLYDIMERMDVLDF 74 (184)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~IlV~TP~~l~~~~~~~~~~~~ 74 (184)
||++|. .-.+.+..++.+++|++++.-.-|+.......+.. .+.+.||+|++-..+..-- +.+.-
T Consensus 621 LVVtpa----StL~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDe---ky~qk 693 (1185)
T KOG0388|consen 621 LVVTPA----STLHNWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDE---KYLQK 693 (1185)
T ss_pred EEeehH----HHHhHHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechH---HHHHh
Confidence 778884 44577888888889999998888876644444331 2357899999987653211 11111
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
-+.++.|+|||..+=++. ..-.+.+++-- -+-.++++.|.-
T Consensus 694 vKWQYMILDEAQAIKSSs-S~RWKtLLsF~--cRNRLLLTGTPI 734 (1185)
T KOG0388|consen 694 VKWQYMILDEAQAIKSSS-SSRWKTLLSFK--CRNRLLLTGTPI 734 (1185)
T ss_pred hhhhheehhHHHHhhhhh-hhHHHHHhhhh--ccceeeecCCcc
Confidence 235799999999875442 22223333221 133567778864
No 157
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.68 E-value=0.22 Score=44.07 Aligned_cols=149 Identities=10% Similarity=-0.059 Sum_probs=89.5
Q ss_pred EEEeccHHHHHHHHHHHHHhhhcCCCceEEE--EECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCcc----CCC
Q 029993 3 MIISPTRELSAQIYHVAQPFISTLPDVKSML--LVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD----FRN 76 (184)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~----~~~ 76 (184)
+++.|+.|+++...+.+.-....+|..+.+. -+.|.+ +...+.+.+.+.+++.+.|......+-- +..+ +-.
T Consensus 335 ~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~s-E~~~~A~~R~~~~~~~s~~~~~~s~~L~-~~~~~~~~~~~ 412 (1034)
T KOG4150|consen 335 LLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLS-ETTKSALKRIGLNTLYSHQAEAISAALA-KSLCYNVPVFE 412 (1034)
T ss_pred ecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCC-chhHHHHHhcCcceeecCHHHHHHHHhh-hccccccHHHH
Confidence 5677888888776554433333333333222 222333 3333444567999999999987665433 2222 445
Q ss_pred ceEEEechhhHhhccchHHHHHHHHHhC---------CCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCcccccc
Q 029993 77 LVILVLDEADRLLDMGFQKQISYIISRL---------PKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHAS 147 (184)
Q Consensus 77 l~~lVvDEaD~l~~~~~~~~l~~i~~~l---------~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~ 147 (184)
+++.++||.|.... .|+.++...++.+ ..+-|++=.|||+-+++.....-+--+-+.+...++
T Consensus 413 ~~~~~~~~~~~Y~~-~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG------- 484 (1034)
T KOG4150|consen 413 ELCKDTNSCALYLF-PTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDG------- 484 (1034)
T ss_pred HHHhcccceeeeec-chhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC-------
Confidence 67889999997654 3555555444444 235799999999999877666555445555444444
Q ss_pred chhhhhcccCCCCcceeEEEEecC
Q 029993 148 ASSQQLASSKTPLGLHLEVLRLNI 171 (184)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~~~~~~~ 171 (184)
.|.+-+|+.+--++
T Consensus 485 ----------SPs~~K~~V~WNP~ 498 (1034)
T KOG4150|consen 485 ----------SPSSEKLFVLWNPS 498 (1034)
T ss_pred ----------CCCccceEEEeCCC
Confidence 55555666665443
No 158
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.49 E-value=0.85 Score=39.43 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=53.8
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||.++|+.-|.++...+.+. ++++..++|+.+.++.. ....++..+|||||-. + . ..+|+.+++
T Consensus 229 ~IIF~~s~~~~e~la~~L~~~-----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~-~----~--~GID~p~V~ 296 (470)
T TIGR00614 229 GIIYCPSRKKSEQVTASLQNL-----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVA-F----G--MGINKPDVR 296 (470)
T ss_pred eEEEECcHHHHHHHHHHHHhc-----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEech-h----h--ccCCcccce
Confidence 589999999999999888764 57888888887654443 2334578999999962 1 1 578888899
Q ss_pred EEEechh
Q 029993 79 ILVLDEA 85 (184)
Q Consensus 79 ~lVvDEa 85 (184)
++|.-..
T Consensus 297 ~VI~~~~ 303 (470)
T TIGR00614 297 FVIHYSL 303 (470)
T ss_pred EEEEeCC
Confidence 8885443
No 159
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=92.47 E-value=0.79 Score=39.03 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=53.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+||+++|++-|..++..+.+. ++++..+.|+....+... ...++..+|||||- .+. ..+|+.++
T Consensus 247 ~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~~--~GiDip~v 314 (434)
T PRK11192 247 RSIVFVRTRERVHELAGWLRKA-----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VAA--RGIDIDDV 314 (434)
T ss_pred eEEEEeCChHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc--cCccCCCC
Confidence 3799999999999999888763 678888888876554433 33456799999995 222 57899999
Q ss_pred eEEEe
Q 029993 78 VILVL 82 (184)
Q Consensus 78 ~~lVv 82 (184)
.++|.
T Consensus 315 ~~VI~ 319 (434)
T PRK11192 315 SHVIN 319 (434)
T ss_pred CEEEE
Confidence 98873
No 160
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=92.45 E-value=5.2 Score=33.50 Aligned_cols=109 Identities=19% Similarity=0.264 Sum_probs=77.8
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECC-cchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGG-VEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+|.+|+-|...|+...+++- +|..++..+.+. ....+.....+++..+|+|+|. ++ + +.+.+.+++.+
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~---~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT--IL----E-RGVTfp~vdV~ 377 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKK---LPKETIASVHSEDQHRKEKVEAFRDGKITLLITTT--IL----E-RGVTFPNVDVF 377 (441)
T ss_pred EEEEecchHHHHHHHHHHHhh---CCccceeeeeccCccHHHHHHHHHcCceEEEEEee--hh----h-cccccccceEE
Confidence 589999999999999988654 345565555554 4566777888788899999997 22 2 68899999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCC-----ceEEEEeeeCchHHHH
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKL-----RRTGLFSATQTEAVEE 123 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~-----~q~i~~SAT~~~~v~~ 123 (184)
|++--|+++. ...+..|.-+.++. --+++|=.-.+.++.+
T Consensus 378 Vlgaeh~vfT---esaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~ 422 (441)
T COG4098 378 VLGAEHRVFT---ESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQ 422 (441)
T ss_pred EecCCccccc---HHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHH
Confidence 9999988774 44555566555542 2466665555655443
No 161
>PHA02653 RNA helicase NPH-II; Provisional
Probab=92.42 E-value=0.62 Score=42.27 Aligned_cols=71 Identities=14% Similarity=0.249 Sum_probs=53.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH-HHHHH-HcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD-VKKIE-EEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~-~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
.+||++|+++-+....+.+.+.. +++.+..++|+.+..++ ..... ++...|||+|. +.. ..+++.++.
T Consensus 397 ~iLVFlpg~~ei~~l~~~L~~~~---~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATd------IAE-RGIDIp~V~ 466 (675)
T PHA02653 397 SGIVFVASVSQCEEYKKYLEKRL---PIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTP------YLE-SSVTIRNAT 466 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHhhc---CCceEEeccCCcCHHHHHHHHHhccCceeEEeccC------hhh-ccccccCee
Confidence 37999999998888877776643 46889999998775433 24442 45689999998 334 788999998
Q ss_pred EEE
Q 029993 79 ILV 81 (184)
Q Consensus 79 ~lV 81 (184)
++|
T Consensus 467 ~VI 469 (675)
T PHA02653 467 HVY 469 (675)
T ss_pred EEE
Confidence 886
No 162
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.14 E-value=0.5 Score=42.79 Aligned_cols=110 Identities=20% Similarity=0.222 Sum_probs=59.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
-||++|+.-+ .|....+.+..+. ..+.+...+| ...+...+ .++||+++|++.+.. ..+---..-.+|
T Consensus 192 tLivcp~s~~-~qW~~elek~~~~-~~l~v~v~~g---r~kd~~el--~~~dVVltTy~il~~-----~~l~~i~w~Rii 259 (674)
T KOG1001|consen 192 TLIVCPTSLL-TQWKTELEKVTEE-DKLSIYVYHG---RTKDKSEL--NSYDVVLTTYDILKN-----SPLVKIKWLRIV 259 (674)
T ss_pred eeEecchHHH-HHHHHHHhccCCc-cceEEEEecc---cccccchh--cCCceEEeeHHHhhc-----ccccceeEEEEE
Confidence 3677776554 4444545555432 2567666666 22333344 578999999987763 111112233679
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc-hHHHHHHH
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT-EAVEELSK 126 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~-~~v~~~~~ 126 (184)
+||||.+-... .+.......+...++. .+++|.. ..++++..
T Consensus 260 ldea~~ikn~~--tq~~~a~~~L~a~~RW-cLtgtPiqn~~~~lys 302 (674)
T KOG1001|consen 260 LDEAHTIKNKD--TQIFKAVCQLDAKYRW-CLTGTPIQNNLDELYS 302 (674)
T ss_pred eccccccCCcc--hHhhhhheeeccceee-eecCChhhhhHHHHHH
Confidence 99999875443 2233333334334444 4466654 34444433
No 163
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=92.09 E-value=0.16 Score=39.04 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=33.1
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
....++++||+|.=+|......+..+++.+.+.+|+++.|
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~T 196 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITT 196 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 4567999999999999989999999999999999999875
No 164
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=91.99 E-value=1.5 Score=36.42 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=43.1
Q ss_pred EeeechHHHHHHHHhcCCccCCCceEEEechhhHhhcc-------chHHHHHHHHHhCC------CCceEEEEeeeCchH
Q 029993 54 LLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDM-------GFQKQISYIISRLP------KLRRTGLFSATQTEA 120 (184)
Q Consensus 54 IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~-------~~~~~l~~i~~~l~------~~~q~i~~SAT~~~~ 120 (184)
..+..|..+...... .........++|+||||+|... ...+.+..+++.-+ ...|.+--+...+.+
T Consensus 62 ~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~kv~v~f~D~~Q~i~~~e~~~~~ 140 (352)
T PF09848_consen 62 SDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRAKVVVFFYDENQSIRPSEIGTLE 140 (352)
T ss_pred hhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhcCCEEEEEEccccEeecccCCCHH
Confidence 344455444443321 2234567889999999999883 23577778877732 134666655555444
Q ss_pred -HHHHHHHh
Q 029993 121 -VEELSKAG 128 (184)
Q Consensus 121 -v~~~~~~~ 128 (184)
...++..+
T Consensus 141 ~l~~~~~~~ 149 (352)
T PF09848_consen 141 NLEEIAENL 149 (352)
T ss_pred HHHHHHHhc
Confidence 44555444
No 165
>PTZ00110 helicase; Provisional
Probab=91.95 E-value=1 Score=39.78 Aligned_cols=70 Identities=10% Similarity=0.102 Sum_probs=52.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+||+|+|++-|..+...+..- ++.+..++|+....+.. ....++...|||||.. + . ..+|+.++
T Consensus 379 k~LIF~~t~~~a~~l~~~L~~~-----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv-----~-~-rGIDi~~v 446 (545)
T PTZ00110 379 KILIFVETKKGADFLTKELRLD-----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDV-----A-S-RGLDVKDV 446 (545)
T ss_pred eEEEEecChHHHHHHHHHHHHc-----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcch-----h-h-cCCCcccC
Confidence 3799999999999998877642 56778888887654443 3344567899999962 2 2 67899999
Q ss_pred eEEEe
Q 029993 78 VILVL 82 (184)
Q Consensus 78 ~~lVv 82 (184)
.++|.
T Consensus 447 ~~VI~ 451 (545)
T PTZ00110 447 KYVIN 451 (545)
T ss_pred CEEEE
Confidence 98874
No 166
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.81 E-value=1.9 Score=39.50 Aligned_cols=96 Identities=16% Similarity=0.254 Sum_probs=61.9
Q ss_pred HHHHhhhcCCCceEEEEECCcchH-----HHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhcc-
Q 029993 18 VAQPFISTLPDVKSMLLVGGVEVK-----ADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDM- 91 (184)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~- 91 (184)
+-+.+.+.+|+.++..+.++.... .......++..||+|||+ |+. +..+|-++..+++=.||.++..
T Consensus 496 ieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQ-----mia--KG~~fp~vtLVgvl~aD~~L~~~ 568 (730)
T COG1198 496 IEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQ-----MIA--KGHDFPNVTLVGVLDADTGLGSP 568 (730)
T ss_pred HHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecch-----hhh--cCCCcccceEEEEEechhhhcCC
Confidence 344444557889999888876542 224445567899999999 232 5789999999999999998865
Q ss_pred chH------HHHHHHHHhCC---CCceEEEEeeeCchH
Q 029993 92 GFQ------KQISYIISRLP---KLRRTGLFSATQTEA 120 (184)
Q Consensus 92 ~~~------~~l~~i~~~l~---~~~q~i~~SAT~~~~ 120 (184)
+|+ ..+..+..+.+ +..++++=|+.....
T Consensus 569 DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp 606 (730)
T COG1198 569 DFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHP 606 (730)
T ss_pred CcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcH
Confidence 232 22222222222 234677766666543
No 167
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=91.77 E-value=2 Score=29.38 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=51.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH---HHHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
.||++++++-+.++.+.+.+. +..+..+.|+....+. .....++...|+++|.. + . ..+|+..+.
T Consensus 31 ~lvf~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~-~-----~-~G~d~~~~~ 98 (131)
T cd00079 31 VLIFCPSKKMLDELAELLRKP-----GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV-I-----A-RGIDLPNVS 98 (131)
T ss_pred EEEEeCcHHHHHHHHHHHHhc-----CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh-h-----h-cCcChhhCC
Confidence 689999999999998888872 5677888887653322 22333455689999872 1 1 467877888
Q ss_pred EEEechhh
Q 029993 79 ILVLDEAD 86 (184)
Q Consensus 79 ~lVvDEaD 86 (184)
.+|+.+.+
T Consensus 99 ~vi~~~~~ 106 (131)
T cd00079 99 VVINYDLP 106 (131)
T ss_pred EEEEeCCC
Confidence 88877664
No 168
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.77 E-value=1.1 Score=40.31 Aligned_cols=70 Identities=16% Similarity=0.276 Sum_probs=51.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH---HHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
++||+|+|+.-+.++++.+... ++.+..++|+.+..+. .....++..+|||||- .+. ..+|+.++
T Consensus 247 ~~IVF~~tk~~a~~l~~~L~~~-----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd-----v~a--rGIDip~V 314 (629)
T PRK11634 247 AAIIFVRTKNATLEVAEALERN-----GYNSAALNGDMNQALREQTLERLKDGRLDILIATD-----VAA--RGLDVERI 314 (629)
T ss_pred CEEEEeccHHHHHHHHHHHHhC-----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc-----hHh--cCCCcccC
Confidence 4799999999999998887763 5678888888765443 2334457899999995 222 56777777
Q ss_pred eEEEe
Q 029993 78 VILVL 82 (184)
Q Consensus 78 ~~lVv 82 (184)
.++|.
T Consensus 315 ~~VI~ 319 (629)
T PRK11634 315 SLVVN 319 (629)
T ss_pred CEEEE
Confidence 77764
No 169
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=91.73 E-value=1.1 Score=41.59 Aligned_cols=72 Identities=13% Similarity=0.215 Sum_probs=55.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHH---cCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE---EGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+||++|+++-+..+++.+.+... +++.+..++|+.+.+++...+.. +...|||+|. +-. ..+++.++
T Consensus 211 ~iLVFlpg~~eI~~l~~~L~~~~~--~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn------IAE-rgItIp~V 281 (819)
T TIGR01970 211 SILVFLPGQAEIRRVQEQLAERLD--SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN------IAE-TSLTIEGI 281 (819)
T ss_pred cEEEEECCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc------hHh-hcccccCc
Confidence 379999999999999888876322 37889999999887776665532 3468999998 333 67889999
Q ss_pred eEEE
Q 029993 78 VILV 81 (184)
Q Consensus 78 ~~lV 81 (184)
+++|
T Consensus 282 ~~VI 285 (819)
T TIGR01970 282 RVVI 285 (819)
T ss_pred eEEE
Confidence 8776
No 170
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=91.67 E-value=1.2 Score=38.37 Aligned_cols=72 Identities=14% Similarity=0.254 Sum_probs=53.3
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+||+|+|++-|..+++.+.+. ++.+..++|+.+..++.. ...++..+|+|||- .+. ..+|+.++
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~-----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----v~~--rGiDi~~v 311 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQ-----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-----VAA--RGLDIKAL 311 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----ccc--cccchhcC
Confidence 3799999999999998888764 578888999876554432 33346789999995 122 57889999
Q ss_pred eEEEech
Q 029993 78 VILVLDE 84 (184)
Q Consensus 78 ~~lVvDE 84 (184)
.++|.-+
T Consensus 312 ~~VI~~d 318 (460)
T PRK11776 312 EAVINYE 318 (460)
T ss_pred CeEEEec
Confidence 9887543
No 171
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=91.62 E-value=0.81 Score=44.11 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=52.1
Q ss_pred CEEEEeccH---HHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCC-
Q 029993 1 MGMIISPTR---ELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRN- 76 (184)
Q Consensus 1 ~alIl~Ptr---eLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~- 76 (184)
++||.|||+ +-|..+.+.+.+. ++++..++|+... .......++..+|+|||-.. .+.+. +.+|+.+
T Consensus 328 ~~IVFv~t~~~~~~a~~l~~~L~~~-----g~~a~~lhg~~~~-~~l~~Fr~G~~~vLVata~~-tdv~a--RGIDip~~ 398 (1171)
T TIGR01054 328 GGIVYVSIDYGKEKAEEIAEFLENH-----GVKAVAYHATKPK-EDYEKFAEGEIDVLIGVASY-YGTLV--RGLDLPER 398 (1171)
T ss_pred CEEEEEeccccHHHHHHHHHHHHhC-----CceEEEEeCCCCH-HHHHHHHcCCCCEEEEeccc-cCccc--ccCCCCcc
Confidence 479999999 8888888777663 6889999998752 44555556789999998410 01111 5778777
Q ss_pred ceEEEe
Q 029993 77 LVILVL 82 (184)
Q Consensus 77 l~~lVv 82 (184)
++++|.
T Consensus 399 V~~vI~ 404 (1171)
T TIGR01054 399 VRYAVF 404 (1171)
T ss_pred ccEEEE
Confidence 788876
No 172
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=91.59 E-value=1.2 Score=38.53 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=52.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
++||++++++-|..+++.+.+. ++++..++|+....++. ....++...|||+|. .+. ..+|+.++
T Consensus 337 ~~IVF~~s~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~-----~l~--~GIDi~~v 404 (475)
T PRK01297 337 RVMVFANRKDEVRRIEERLVKD-----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-----VAG--RGIHIDGI 404 (475)
T ss_pred eEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc--cCCcccCC
Confidence 4799999999999998877654 56777888876655443 333356789999995 122 57899999
Q ss_pred eEEEec
Q 029993 78 VILVLD 83 (184)
Q Consensus 78 ~~lVvD 83 (184)
.++|..
T Consensus 405 ~~VI~~ 410 (475)
T PRK01297 405 SHVINF 410 (475)
T ss_pred CEEEEe
Confidence 988853
No 173
>PRK09401 reverse gyrase; Reviewed
Probab=91.16 E-value=0.51 Score=45.44 Aligned_cols=72 Identities=17% Similarity=0.403 Sum_probs=50.2
Q ss_pred CEEEEeccHHH---HHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCC-
Q 029993 1 MGMIISPTREL---SAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRN- 76 (184)
Q Consensus 1 ~alIl~PtreL---a~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~- 76 (184)
++||.|||++- |..+.+.++.. ++++..++|+. ........++..+|+|||... .+.+. ..+|+.+
T Consensus 330 ~~LIFv~t~~~~~~ae~l~~~L~~~-----gi~v~~~hg~l--~~~l~~F~~G~~~VLVatas~-tdv~a--RGIDiP~~ 399 (1176)
T PRK09401 330 GGLIFVPSDKGKEYAEELAEYLEDL-----GINAELAISGF--ERKFEKFEEGEVDVLVGVASY-YGVLV--RGIDLPER 399 (1176)
T ss_pred CEEEEEecccChHHHHHHHHHHHHC-----CCcEEEEeCcH--HHHHHHHHCCCCCEEEEecCC-CCcee--ecCCCCcc
Confidence 47999999655 77777666653 68899999998 344556667789999998421 01111 5778777
Q ss_pred ceEEEe
Q 029993 77 LVILVL 82 (184)
Q Consensus 77 l~~lVv 82 (184)
++++|.
T Consensus 400 IryVI~ 405 (1176)
T PRK09401 400 IRYAIF 405 (1176)
T ss_pred eeEEEE
Confidence 788876
No 174
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=91.09 E-value=1.4 Score=39.48 Aligned_cols=69 Identities=12% Similarity=0.180 Sum_probs=50.8
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
++|.++|+.-|.+++..+.+. ++++..++|+.+.++... ...++..+|||||.. + . ..+|+.+++
T Consensus 239 ~IIFc~tr~~~e~la~~L~~~-----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a-----~-~-~GIDip~V~ 306 (607)
T PRK11057 239 GIIYCNSRAKVEDTAARLQSR-----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA-----F-G-MGINKPNVR 306 (607)
T ss_pred EEEEECcHHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech-----h-h-ccCCCCCcC
Confidence 689999999999998888764 578888888876544332 233467899999983 1 1 467888888
Q ss_pred EEEe
Q 029993 79 ILVL 82 (184)
Q Consensus 79 ~lVv 82 (184)
++|.
T Consensus 307 ~VI~ 310 (607)
T PRK11057 307 FVVH 310 (607)
T ss_pred EEEE
Confidence 7774
No 175
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=91.09 E-value=7 Score=35.44 Aligned_cols=76 Identities=13% Similarity=0.308 Sum_probs=56.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
+++|+++|+.-|..+.+.+... ++++..++|+....+.. .....++.+|+|||- .+. .++++.++
T Consensus 448 ~viIf~~t~~~ae~L~~~L~~~-----gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~-----~L~--rGfdlp~v 515 (652)
T PRK05298 448 RVLVTTLTKRMAEDLTDYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-----LLR--EGLDIPEV 515 (652)
T ss_pred EEEEEeCCHHHHHHHHHHHhhc-----ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC-----HHh--CCccccCC
Confidence 3789999999999998888764 57888888876543332 233346789999994 222 68899999
Q ss_pred eEEEechhhHh
Q 029993 78 VILVLDEADRL 88 (184)
Q Consensus 78 ~~lVvDEaD~l 88 (184)
+++|+=|+|..
T Consensus 516 ~lVii~d~eif 526 (652)
T PRK05298 516 SLVAILDADKE 526 (652)
T ss_pred cEEEEeCCccc
Confidence 99988888753
No 176
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.98 E-value=1.2 Score=38.81 Aligned_cols=78 Identities=18% Similarity=0.150 Sum_probs=50.5
Q ss_pred echHHHHHHHHh-------cCCccCCCceEEEechhhHh-hcc-chHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHH
Q 029993 57 GTPGRLYDIMER-------MDVLDFRNLVILVLDEADRL-LDM-GFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (184)
Q Consensus 57 ~TP~~l~~~~~~-------~~~~~~~~l~~lVvDEaD~l-~~~-~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~ 127 (184)
+||..++.++.. +....+..-+.+|+||||.= +.. -....++.++.+-| +-.+|..|||+... -.+.
T Consensus 133 ~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rp-dLk~vvmSatl~a~---Kfq~ 208 (699)
T KOG0925|consen 133 TSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRP-DLKLVVMSATLDAE---KFQR 208 (699)
T ss_pred CChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCC-CceEEEeecccchH---HHHH
Confidence 466666666543 13345788999999999962 222 24455566666554 78999999998743 3556
Q ss_pred hCCCCeEEEEc
Q 029993 128 GLRNPVRIEVR 138 (184)
Q Consensus 128 ~~~~~~~i~~~ 138 (184)
|+.|+-.+.+.
T Consensus 209 yf~n~Pll~vp 219 (699)
T KOG0925|consen 209 YFGNAPLLAVP 219 (699)
T ss_pred HhCCCCeeecC
Confidence 66665555554
No 177
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=90.93 E-value=1.5 Score=38.42 Aligned_cols=71 Identities=8% Similarity=0.112 Sum_probs=52.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||.++|+.-|..+.+.+... . ++++..++|+.+..++.. ...++..+|||+|.. + . ..+|+.+++
T Consensus 370 ~iVFv~s~~~a~~l~~~L~~~---~-g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdv-----l-~-rGiDip~v~ 438 (518)
T PLN00206 370 AVVFVSSRLGADLLANAITVV---T-GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGV-----L-G-RGVDLLRVR 438 (518)
T ss_pred EEEEcCCchhHHHHHHHHhhc---c-CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecH-----h-h-ccCCcccCC
Confidence 789999999998887776653 2 678888999876554433 334567899999972 2 2 688999999
Q ss_pred EEEec
Q 029993 79 ILVLD 83 (184)
Q Consensus 79 ~lVvD 83 (184)
++|.-
T Consensus 439 ~VI~~ 443 (518)
T PLN00206 439 QVIIF 443 (518)
T ss_pred EEEEe
Confidence 88853
No 178
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=90.86 E-value=1.7 Score=36.21 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=48.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+||+++|+.-|..++..+++.. . +..+..++|.....++. .. ...+|+|||. +.. ..+|++.. .+|
T Consensus 275 ~LIf~nt~~~~~~l~~~L~~~~--~-~~~~~~l~g~~~~~~R~-~~--~~~~iLVaTd--v~~-----rGiDi~~~-~vi 340 (357)
T TIGR03158 275 GAIILDSLDEVNRLSDLLQQQG--L-GDDIGRITGFAPKKDRE-RA--MQFDILLGTS--TVD-----VGVDFKRD-WLI 340 (357)
T ss_pred EEEEECCHHHHHHHHHHHhhhC--C-CceEEeeecCCCHHHHH-Hh--ccCCEEEEec--HHh-----cccCCCCc-eEE
Confidence 7999999999999999988752 2 45666777766654433 22 3689999998 222 57887766 555
Q ss_pred ec
Q 029993 82 LD 83 (184)
Q Consensus 82 vD 83 (184)
.|
T Consensus 341 ~~ 342 (357)
T TIGR03158 341 FS 342 (357)
T ss_pred EC
Confidence 54
No 179
>PTZ00424 helicase 45; Provisional
Probab=90.77 E-value=1.4 Score=36.83 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=51.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
+++|.++|++-|..+.+.+... ++.+..++|+.+..++.. ...++..+|||||. .+. .++|+.++
T Consensus 269 ~~ivF~~t~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----~l~--~GiDip~v 336 (401)
T PTZ00424 269 QAIIYCNTRRKVDYLTKKMHER-----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-----LLA--RGIDVQQV 336 (401)
T ss_pred eEEEEecCcHHHHHHHHHHHHC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----ccc--CCcCcccC
Confidence 3689999999988887766553 578888999876554432 33456799999996 122 57899999
Q ss_pred eEEEe
Q 029993 78 VILVL 82 (184)
Q Consensus 78 ~~lVv 82 (184)
.++|.
T Consensus 337 ~~VI~ 341 (401)
T PTZ00424 337 SLVIN 341 (401)
T ss_pred CEEEE
Confidence 98875
No 180
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=90.69 E-value=2.5 Score=40.56 Aligned_cols=128 Identities=16% Similarity=0.214 Sum_probs=76.9
Q ss_pred EEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHH---HHHc-----CCcEeeechHHHHHHHHhcCCccC
Q 029993 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEE-----GANLLIGTPGRLYDIMERMDVLDF 74 (184)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---l~~~-----~~~IlV~TP~~l~~~~~~~~~~~~ 74 (184)
||+||-.-++. ..+.+...+ +.++....|.....+.++. ..+. +++++++|-..++.--...+.
T Consensus 424 lvvvplst~~~-W~~ef~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~--- 495 (1373)
T KOG0384|consen 424 LVVVPLSTITA-WEREFETWT----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSK--- 495 (1373)
T ss_pred EEEeehhhhHH-HHHHHHHHh----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhcc---
Confidence 78888665443 334555554 5677777776554333221 1122 589999999888763222122
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee-CchHHHHHHHH-hCCCCeEEEEccCC
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT-QTEAVEELSKA-GLRNPVRIEVRAES 141 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT-~~~~v~~~~~~-~~~~~~~i~~~~~~ 141 (184)
=..+++++||||+|=.. ...+...+..+.-++++++ +.| +-+++++|... .+-.|-.+...++-
T Consensus 496 i~w~~~~vDeahrLkN~--~~~l~~~l~~f~~~~rlli-tgTPlQNsikEL~sLl~Fl~P~kf~~~~~f 561 (1373)
T KOG0384|consen 496 IPWRYLLVDEAHRLKND--ESKLYESLNQFKMNHRLLI-TGTPLQNSLKELWSLLHFLMPGKFDSWDEF 561 (1373)
T ss_pred CCcceeeecHHhhcCch--HHHHHHHHHHhcccceeee-cCCCccccHHHHHHHhcccCCCCCCcHHHH
Confidence 23579999999997432 4444455777766666555 555 56777777653 34567666655443
No 181
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=90.61 E-value=1.4 Score=40.94 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=54.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHH---HcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE---EEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||++|+++-+.++++.+.+... .++.+..++|+.+..++...+. ++...|||+|. +-. ..+++.++.
T Consensus 215 iLVFlpg~~ei~~l~~~L~~~~~--~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn------IAE-rsLtIp~V~ 285 (812)
T PRK11664 215 LLLFLPGVGEIQRVQEQLASRVA--SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN------IAE-TSLTIEGIR 285 (812)
T ss_pred EEEEcCCHHHHHHHHHHHHHhcc--CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc------hHH-hcccccCce
Confidence 79999999999999998886321 2688899999988776665543 23468999998 333 688999999
Q ss_pred EEE
Q 029993 79 ILV 81 (184)
Q Consensus 79 ~lV 81 (184)
++|
T Consensus 286 ~VI 288 (812)
T PRK11664 286 LVV 288 (812)
T ss_pred EEE
Confidence 776
No 182
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=90.54 E-value=0.34 Score=45.21 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=64.0
Q ss_pred EEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH-HHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD-VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
||+||+.-|..=. ..+..+ .|.+......|....... ...+...+.+|+++|-..+.. .. ..+.--+..++|
T Consensus 448 LvivPlstL~NW~-~Ef~kW---aPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk-~lLsKI~W~yMI 520 (1157)
T KOG0386|consen 448 LIIVPLSTLVNWS-SEFPKW---APSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DK-ALLSKISWKYMI 520 (1157)
T ss_pred EEeccccccCCch-hhcccc---ccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CH-HHHhccCCccee
Confidence 6888887776544 223333 355666655554432222 233445789999999976654 11 122233567999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc----hHHHHHHHHh
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT----EAVEELSKAG 128 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~----~~v~~~~~~~ 128 (184)
|||.|+|=. ....+...+.---.....++.+.|.. ++.+.+....
T Consensus 521 IDEGHRmKN--a~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFl 569 (1157)
T KOG0386|consen 521 IDEGHRMKN--AICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFL 569 (1157)
T ss_pred ecccccccc--hhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHh
Confidence 999999832 33344444442223334455566653 3344444433
No 183
>PRK13767 ATP-dependent helicase; Provisional
Probab=90.48 E-value=1.7 Score=40.71 Aligned_cols=75 Identities=11% Similarity=0.135 Sum_probs=53.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhc-CCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFIST-LPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRN 76 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~ 76 (184)
.+||+|+||..|..++..+.+.... +.+..+...+|+.+.++.. ....++...|+|||.. +. ..+|+.+
T Consensus 286 ~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-Le------~GIDip~ 358 (876)
T PRK13767 286 TTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-LE------LGIDIGY 358 (876)
T ss_pred CEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-HH------hcCCCCC
Confidence 3799999999999999888875331 1246778888887655433 3344567899999983 22 4677878
Q ss_pred ceEEEe
Q 029993 77 LVILVL 82 (184)
Q Consensus 77 l~~lVv 82 (184)
+.++|.
T Consensus 359 Vd~VI~ 364 (876)
T PRK13767 359 IDLVVL 364 (876)
T ss_pred CcEEEE
Confidence 887774
No 184
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=90.47 E-value=1.5 Score=38.44 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=70.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHh-c------CCc--
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-M------DVL-- 72 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~-~------~~~-- 72 (184)
.||++|+-+| .|..+.+.+..+. ..++...+| .........+ .+.|++.+|-..+-.-.+. . +.+
T Consensus 234 tLVvaP~VAl-mQW~nEI~~~T~g--slkv~~YhG-~~R~~nikel--~~YDvVLTty~vvEs~yRk~~~GfrrKngv~k 307 (791)
T KOG1002|consen 234 TLVVAPTVAL-MQWKNEIERHTSG--SLKVYIYHG-AKRDKNIKEL--MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDK 307 (791)
T ss_pred eeEEccHHHH-HHHHHHHHHhccC--ceEEEEEec-ccccCCHHHh--hcCcEEEEecHHHHHHHHhccccccccCCccc
Confidence 5899999986 4666777777653 466665555 4444455555 4789999999887665543 1 112
Q ss_pred ---cCCCce--EEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC-chHHHHHHH
Q 029993 73 ---DFRNLV--ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-TEAVEELSK 126 (184)
Q Consensus 73 ---~~~~l~--~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~-~~~v~~~~~ 126 (184)
-+++++ -+|+||||-+=+.. ..-.+.+..+. ....+.+|.|. -+++-++.+
T Consensus 308 e~SlLHsi~~~RiIlDEAH~IK~R~--snTArAV~~L~-tt~rw~LSGTPLQNrigElyS 364 (791)
T KOG1002|consen 308 EKSLLHSIKFYRIILDEAHNIKDRQ--SNTARAVFALE-TTYRWCLSGTPLQNRIGELYS 364 (791)
T ss_pred ccchhhhceeeeeehhhhccccccc--ccHHHHHHhhH-hhhhhhccCCcchhhHHHHHH
Confidence 156666 47999999875432 22222233332 23456778885 455555443
No 185
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.37 E-value=2.9 Score=39.95 Aligned_cols=104 Identities=12% Similarity=0.168 Sum_probs=70.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHH---HHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKA---DVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
|+-+|.|--|-..++...++.+ .|..+++..+|-....+ -+..-.++..||+|||- +-. ..+|..+.
T Consensus 805 QvfYv~NrV~~Ie~~~~~L~~L---VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT------IIE-tGIDIPnA 874 (1139)
T COG1197 805 QVFYVHNRVESIEKKAERLREL---VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT------IIE-TGIDIPNA 874 (1139)
T ss_pred EEEEEecchhhHHHHHHHHHHh---CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee------eee-cCcCCCCC
Confidence 4556777767666666666665 57899999998765433 23344468899999997 223 57899999
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
..+|++-||++ | ..++-.+--+.++..+.-.+=-+.|
T Consensus 875 NTiIIe~AD~f---G-LsQLyQLRGRVGRS~~~AYAYfl~p 911 (1139)
T COG1197 875 NTIIIERADKF---G-LAQLYQLRGRVGRSNKQAYAYFLYP 911 (1139)
T ss_pred ceEEEeccccc---c-HHHHHHhccccCCccceEEEEEeec
Confidence 99999999986 2 4455555666666555443333333
No 186
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=90.30 E-value=0.33 Score=33.69 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=19.9
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
.++|+||||.+.+..+.+.+..+.+ ....++++++
T Consensus 89 ~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G 123 (131)
T PF13401_consen 89 VLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVG 123 (131)
T ss_dssp EEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEE
T ss_pred eEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEE
Confidence 7999999999652223333333333 3344555543
No 187
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.22 E-value=1.4 Score=38.68 Aligned_cols=85 Identities=12% Similarity=0.184 Sum_probs=62.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHH---HHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||+|-|+.-|.++...+... ++.+..++|+.+-.+....| .++.+.|||||-- .. +.+|+.+++
T Consensus 344 vIIFc~tkr~~~~l~~~l~~~-----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdV------Aa-RGLDi~dV~ 411 (519)
T KOG0331|consen 344 VIIFCETKRTCDELARNLRRK-----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDV------AA-RGLDVPDVD 411 (519)
T ss_pred EEEEecchhhHHHHHHHHHhc-----CcceeeecccccHHHHHHHHHhcccCCcceEEEccc------cc-ccCCCcccc
Confidence 789999999999998877774 46788999998766554443 3568999999972 23 789999999
Q ss_pred EEEechhhHhhccchHHHHHHHHHhCCC
Q 029993 79 ILVLDEADRLLDMGFQKQISYIISRLPK 106 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~~~l~~i~~~l~~ 106 (184)
++| ..+|...+..-+.++++
T Consensus 412 lVI--------nydfP~~vEdYVHRiGR 431 (519)
T KOG0331|consen 412 LVI--------NYDFPNNVEDYVHRIGR 431 (519)
T ss_pred EEE--------eCCCCCCHHHHHhhcCc
Confidence 887 33455555555555543
No 188
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=90.19 E-value=2.4 Score=39.01 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=71.6
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcch--HHHHHHH----HHcCCcEeeechHHHHHHHHhcCCccCC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV--KADVKKI----EEEGANLLIGTPGRLYDIMERMDVLDFR 75 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~l----~~~~~~IlV~TP~~l~~~~~~~~~~~~~ 75 (184)
+||++|.. |..-.++.|.++.... .+....++|+.+. -.....+ ..-.--|++-+-+.+.+++.. +...
T Consensus 301 ~lVV~P~s-Lv~nWkkEF~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~ 375 (776)
T KOG0390|consen 301 PLVVAPSS-LVNNWKKEFGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLI 375 (776)
T ss_pred cEEEccHH-HHHHHHHHHHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcC
Confidence 68889954 5666677777775532 5666777776652 0000001 011234667777777666654 5567
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC-chHHHHHHH
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-TEAVEELSK 126 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~-~~~v~~~~~ 126 (184)
.+.++|+||.|++-.. ...+...+.++.- ++.|++|.|+ -+++.++..
T Consensus 376 ~~glLVcDEGHrlkN~--~s~~~kaL~~l~t-~rRVLLSGTp~QNdl~EyFn 424 (776)
T KOG0390|consen 376 RPGLLVCDEGHRLKNS--DSLTLKALSSLKT-PRRVLLTGTPIQNDLKEYFN 424 (776)
T ss_pred CCCeEEECCCCCccch--hhHHHHHHHhcCC-CceEEeeCCcccccHHHHHH
Confidence 7889999999997543 4555556666644 5566678885 555555544
No 189
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.95 E-value=6.5 Score=31.81 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=31.2
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~ 117 (184)
..-+++++||+|.+-.......+..+++..+..+++++.+...
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 3568999999998833335667778888887778877765433
No 190
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=89.93 E-value=2.3 Score=37.83 Aligned_cols=69 Identities=12% Similarity=0.233 Sum_probs=50.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
++|.++|+..|.++.+.+... ++++..++||.+.++... ...++..+|||||-. +. ..+|..+++
T Consensus 227 ~IIf~~sr~~~e~la~~L~~~-----g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a-----~~--~GID~p~v~ 294 (591)
T TIGR01389 227 GIIYASSRKKVEELAERLESQ-----GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNA-----FG--MGIDKPNVR 294 (591)
T ss_pred EEEEECcHHHHHHHHHHHHhC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEech-----hh--ccCcCCCCC
Confidence 689999999999998887653 577888888876544432 223467899999973 11 467777888
Q ss_pred EEEe
Q 029993 79 ILVL 82 (184)
Q Consensus 79 ~lVv 82 (184)
++|.
T Consensus 295 ~VI~ 298 (591)
T TIGR01389 295 FVIH 298 (591)
T ss_pred EEEE
Confidence 7764
No 191
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=89.74 E-value=1.4 Score=36.34 Aligned_cols=72 Identities=17% Similarity=0.271 Sum_probs=49.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH-------HHHHHcCCcEeeechHHHHHHHHhcCCcc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV-------KKIEEEGANLLIGTPGRLYDIMERMDVLD 73 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~IlV~TP~~l~~~~~~~~~~~ 73 (184)
.+||+++|++-|..+++.+.+.+ ++..+..++|+....+.. ....++...|+|+|. .+ . ..+|
T Consensus 224 ~~lVf~~t~~~~~~~~~~L~~~~---~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~-~~-~-----~GiD 293 (358)
T TIGR01587 224 KIAIIVNTVDRAQEFYQQLKENA---PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ-VI-E-----ASLD 293 (358)
T ss_pred eEEEEECCHHHHHHHHHHHHhhc---CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc-ch-h-----ceec
Confidence 47999999999999988887753 245788888886544332 233346788999998 22 2 4667
Q ss_pred CCCceEEEec
Q 029993 74 FRNLVILVLD 83 (184)
Q Consensus 74 ~~~l~~lVvD 83 (184)
+. +.++|.+
T Consensus 294 i~-~~~vi~~ 302 (358)
T TIGR01587 294 IS-ADVMITE 302 (358)
T ss_pred cC-CCEEEEc
Confidence 63 5566544
No 192
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=89.49 E-value=2.1 Score=37.60 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=61.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHH---HHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
.+|+|.+++=|.-+.+.+.+. +.+++.++||..-++.... +..+..+|+|||-- .. ..+|..++.
T Consensus 520 iIIFvN~kk~~d~lAk~LeK~-----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDv------Ag-RGIDIpnVS 587 (673)
T KOG0333|consen 520 IIIFVNTKKGADALAKILEKA-----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDV------AG-RGIDIPNVS 587 (673)
T ss_pred EEEEEechhhHHHHHHHHhhc-----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecc------cc-cCCCCCccc
Confidence 578999999999888888886 5789999999876655443 33457899999973 33 788999998
Q ss_pred EEEechhhHhhccchHHHHHHHHHhCC
Q 029993 79 ILVLDEADRLLDMGFQKQISYIISRLP 105 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~~~l~~i~~~l~ 105 (184)
++| ..++...+....-+++
T Consensus 588 lVi--------nydmaksieDYtHRIG 606 (673)
T KOG0333|consen 588 LVI--------NYDMAKSIEDYTHRIG 606 (673)
T ss_pred eee--------ecchhhhHHHHHHHhc
Confidence 876 2334555555555554
No 193
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=89.49 E-value=6.7 Score=33.87 Aligned_cols=120 Identities=13% Similarity=0.186 Sum_probs=64.1
Q ss_pred EeccHHHHHHHHHHHHHhhhcCC--CceEEEEECCcchHH--HHH----HHHHcCCcEeeechHHHHHHHHh---cCCc-
Q 029993 5 ISPTRELSAQIYHVAQPFISTLP--DVKSMLLVGGVEVKA--DVK----KIEEEGANLLIGTPGRLYDIMER---MDVL- 72 (184)
Q Consensus 5 l~PtreLa~Qi~~~~~~l~~~~~--~~~~~~~~~~~~~~~--~~~----~l~~~~~~IlV~TP~~l~~~~~~---~~~~- 72 (184)
+-|+-++|......+.+-....+ ......++|+...+. -.. .+...+..++..+...+...+.. .+..
T Consensus 115 ~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~ 194 (445)
T PRK12422 115 VTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQ 194 (445)
T ss_pred eCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHH
Confidence 35666666555444432111111 235667887654321 111 22234678888888766544321 0111
Q ss_pred ----cCCCceEEEechhhHhhccc-hHHHHHHHHHhCC-CCceEEEEeeeCchHHHHH
Q 029993 73 ----DFRNLVILVLDEADRLLDMG-FQKQISYIISRLP-KLRRTGLFSATQTEAVEEL 124 (184)
Q Consensus 73 ----~~~~l~~lVvDEaD~l~~~~-~~~~l~~i~~~l~-~~~q~i~~SAT~~~~v~~~ 124 (184)
.++++..+++||+|.+.+.. ..+.+..+++.+. ...|+++.|.+.|.+...+
T Consensus 195 ~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 195 RFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred HHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 15678899999999875432 3445555555432 3467777666656655433
No 194
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=88.88 E-value=0.84 Score=42.91 Aligned_cols=84 Identities=12% Similarity=0.211 Sum_probs=61.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhcC-----CccCC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD-----VLDFR 75 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~~-----~~~~~ 75 (184)
+-|++.+-=||..=.+++..+-.++ +++|.++..+.+..+. +. ...|||.-||...+ .++++.+= ..-.+
T Consensus 182 VHvVTvNDYLA~RDaewm~p~y~fl-GLtVg~i~~~~~~~~R-r~--aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR 257 (1025)
T PRK12900 182 VHVVTVNDYLAQRDKEWMNPVFEFH-GLSVGVILNTMRPEER-RE--QYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQR 257 (1025)
T ss_pred cEEEeechHhhhhhHHHHHHHHHHh-CCeeeeeCCCCCHHHH-HH--hCCCcceecCCCccccccchhccccchhhhhcc
Confidence 4577888889999899999999888 9999988665554333 33 36899999999876 34443311 11246
Q ss_pred CceEEEechhhHhh
Q 029993 76 NLVILVLDEADRLL 89 (184)
Q Consensus 76 ~l~~lVvDEaD~l~ 89 (184)
.+.|.||||+|.++
T Consensus 258 ~~~faIVDEvDSvL 271 (1025)
T PRK12900 258 DFYFAIVDEVDSVL 271 (1025)
T ss_pred CCceEEEechhhhh
Confidence 78899999999975
No 195
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=88.87 E-value=1.3 Score=39.82 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=58.3
Q ss_pred CEEEEeccHHHHH-----HHHHHHHHhhhcCCCceEEEEECCcchH--HH-HHHHHHcCCcEeeechHHHHHHHHhcCCc
Q 029993 1 MGMIISPTRELSA-----QIYHVAQPFISTLPDVKSMLLVGGVEVK--AD-VKKIEEEGANLLIGTPGRLYDIMERMDVL 72 (184)
Q Consensus 1 ~alIl~PtreLa~-----Qi~~~~~~l~~~~~~~~~~~~~~~~~~~--~~-~~~l~~~~~~IlV~TP~~l~~~~~~~~~~ 72 (184)
||-++||--|=.. .....+..+...+|+.++.+++|....+ ++ +..-.++..||+|+|-- -. -.+
T Consensus 475 QaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTV------IE-VGV 547 (677)
T COG1200 475 QAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTV------IE-VGV 547 (677)
T ss_pred EEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeE------EE-ecc
Confidence 5778888765442 4445556666677889999999987633 22 33334458999999972 22 578
Q ss_pred cCCCceEEEechhhHh
Q 029993 73 DFRNLVILVLDEADRL 88 (184)
Q Consensus 73 ~~~~l~~lVvDEaD~l 88 (184)
|+-+..+.|+..|+++
T Consensus 548 dVPnATvMVIe~AERF 563 (677)
T COG1200 548 DVPNATVMVIENAERF 563 (677)
T ss_pred cCCCCeEEEEechhhh
Confidence 9999999999999996
No 196
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=88.84 E-value=1.5 Score=35.91 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=39.1
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC---chHHHHHHHHhC
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ---TEAVEELSKAGL 129 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~---~~~v~~~~~~~~ 129 (184)
....+.+|+||||.|... -...+++.++..++...+++....+ +..+..-..+|.
T Consensus 127 ~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kfr 184 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFR 184 (346)
T ss_pred CCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhc
Confidence 445599999999998654 5777888888888888888876664 344444444443
No 197
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.34 E-value=0.42 Score=35.48 Aligned_cols=41 Identities=29% Similarity=0.457 Sum_probs=26.6
Q ss_pred cCCcEeeechHHHHHHHHhcC--CccCCCceEEEechhhHhhcc
Q 029993 50 EGANLLIGTPGRLYDIMERMD--VLDFRNLVILVLDEADRLLDM 91 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~~~--~~~~~~l~~lVvDEaD~l~~~ 91 (184)
..+||+|++-.-|.+-..... .+++++ .++|+||||.+.+.
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~-~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKD-NIVIFDEAHNLEDA 160 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCC-EEEEETTGGGCGGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccC-cEEEEecccchHHH
Confidence 468999999887766443201 233443 68999999998654
No 198
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.24 E-value=1.2 Score=41.59 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=47.0
Q ss_pred ceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCC
Q 029993 77 LVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR 130 (184)
Q Consensus 77 l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~ 130 (184)
--|-++||+|.-++..++..+..+++.+....|+|. -||-+++...+.+|++
T Consensus 1120 APFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~--TTFRpEll~vAdKfyg 1171 (1200)
T KOG0964|consen 1120 APFYLFDEIDAALDAQYRTAVADLIKELSDSAQFIT--TTFRPELLSVADKFYG 1171 (1200)
T ss_pred cchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEe--ecccHHHHHHHHhhhc
Confidence 347899999999999999999999999999999886 5899999999999875
No 199
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=87.78 E-value=4 Score=37.59 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=63.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCce-EEEEECCcch----HHHHHHHHHcC----CcEeeechHHHHHHHHhcCCc
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVK-SMLLVGGVEV----KADVKKIEEEG----ANLLIGTPGRLYDIMERMDVL 72 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~-~~~~~~~~~~----~~~~~~l~~~~----~~IlV~TP~~l~~~~~~~~~~ 72 (184)
++|++|+.. ..+..+.+.++. |.++ +....|.... .+....+.... .+++++|-+.+.........+
T Consensus 393 ~liv~p~s~-~~nw~~e~~k~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l 468 (866)
T COG0553 393 ALIVVPASL-LSNWKREFEKFA---PDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGL 468 (866)
T ss_pred eEEEecHHH-HHHHHHHHhhhC---ccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHH
Confidence 577888654 445555555554 4556 6666665541 33444443322 799999999888732110233
Q ss_pred cCCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC-chHHH
Q 029993 73 DFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ-TEAVE 122 (184)
Q Consensus 73 ~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~-~~~v~ 122 (184)
.-.....+|+||||.+-+.. ...-.. ++.+....+ +..|.|. .+++.
T Consensus 469 ~~~~~~~~v~DEa~~ikn~~-s~~~~~-l~~~~~~~~-~~LtgTPlen~l~ 516 (866)
T COG0553 469 KKIEWDRVVLDEAHRIKNDQ-SSEGKA-LQFLKALNR-LDLTGTPLENRLG 516 (866)
T ss_pred hhceeeeeehhhHHHHhhhh-hHHHHH-HHHHhhcce-eeCCCChHhhhHH
Confidence 34556799999999964432 222222 224444344 5556665 43333
No 200
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=87.75 E-value=4 Score=35.81 Aligned_cols=104 Identities=16% Similarity=0.193 Sum_probs=59.0
Q ss_pred EEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEe
Q 029993 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVL 82 (184)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVv 82 (184)
||+||..- -....+.++++.+-. ..+....++.+..... ...+.|.|-+-+.+..+-+ .+--...+.+|+
T Consensus 245 liVcPAsv-rftWa~al~r~lps~--~pi~vv~~~~D~~~~~----~t~~~v~ivSye~ls~l~~---~l~~~~~~vvI~ 314 (689)
T KOG1000|consen 245 LIVCPASV-RFTWAKALNRFLPSI--HPIFVVDKSSDPLPDV----CTSNTVAIVSYEQLSLLHD---ILKKEKYRVVIF 314 (689)
T ss_pred EEEecHHH-hHHHHHHHHHhcccc--cceEEEecccCCcccc----ccCCeEEEEEHHHHHHHHH---HHhcccceEEEE
Confidence 67888543 334455566654433 2244455555433222 2235677777766555432 223345789999
Q ss_pred chhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC
Q 029993 83 DEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (184)
Q Consensus 83 DEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~ 117 (184)
||.|.|-+. -..-.+.++.-+..-.++|++|.|.
T Consensus 315 DEsH~Lk~s-ktkr~Ka~~dllk~akhvILLSGTP 348 (689)
T KOG1000|consen 315 DESHMLKDS-KTKRTKAATDLLKVAKHVILLSGTP 348 (689)
T ss_pred echhhhhcc-chhhhhhhhhHHHHhhheEEecCCc
Confidence 999987554 2333455555555556777888775
No 201
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.59 E-value=4 Score=36.11 Aligned_cols=74 Identities=12% Similarity=0.245 Sum_probs=56.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcch---HHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||.+-+.|-|.|.+..+. .++++.+..++|..+. ++.+...+.+...++|||- ++. +.+||+++.
T Consensus 390 ~lIfVQs~eRak~L~~~L~----~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTd-----ll~--RGiDf~gvn 458 (593)
T KOG0344|consen 390 VLIFVQSKERAKQLFEELE----IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTD-----LLA--RGIDFKGVN 458 (593)
T ss_pred eEEEEecHHHHHHHHHHhh----hccCcceeeEecccchhHHHHHHHHHhccCeeEEEehh-----hhh--ccccccCcc
Confidence 5889999999999999887 3458999999998543 3334455557889999996 233 569999999
Q ss_pred EEEechhh
Q 029993 79 ILVLDEAD 86 (184)
Q Consensus 79 ~lVvDEaD 86 (184)
++|-++.-
T Consensus 459 ~VInyD~p 466 (593)
T KOG0344|consen 459 LVINYDFP 466 (593)
T ss_pred eEEecCCC
Confidence 99986653
No 202
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=87.46 E-value=0.75 Score=37.26 Aligned_cols=40 Identities=28% Similarity=0.251 Sum_probs=28.6
Q ss_pred cCCcEeeechHHHHHHHHh-cCCccCCCceEEEechhhHhhc
Q 029993 50 EGANLLIGTPGRLYDIMER-MDVLDFRNLVILVLDEADRLLD 90 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~-~~~~~~~~l~~lVvDEaD~l~~ 90 (184)
..+||||++-..|++-... .-...+ .-.++|+||||.+.+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00489 210 EFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 5689999999988765532 112344 357999999999864
No 203
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=87.46 E-value=0.75 Score=37.26 Aligned_cols=40 Identities=28% Similarity=0.251 Sum_probs=28.6
Q ss_pred cCCcEeeechHHHHHHHHh-cCCccCCCceEEEechhhHhhc
Q 029993 50 EGANLLIGTPGRLYDIMER-MDVLDFRNLVILVLDEADRLLD 90 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~-~~~~~~~~l~~lVvDEaD~l~~ 90 (184)
..+||||++-..|++-... .-...+ .-.++|+||||.+.+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00488 210 EFANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 5689999999988765532 112344 357999999999864
No 204
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=87.32 E-value=0.96 Score=42.74 Aligned_cols=85 Identities=15% Similarity=0.152 Sum_probs=60.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhc-----CCccCC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDFR 75 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~-----~~~~~~ 75 (184)
+-|++.+-=||..=.+++..+-.++ ++++.++.......++.+.. -.|||.-||...+ .++++.. ...-.+
T Consensus 213 VHvVTVNDYLA~RDaewmgply~fL-GLsvg~i~~~~~~~~~rr~a--Y~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR 289 (1112)
T PRK12901 213 VHVVTVNDYLAKRDSEWMGPLYEFH-GLSVDCIDKHQPNSEARRKA--YNADITYGTNNEFGFDYLRDNMAHSPEDLVQR 289 (1112)
T ss_pred cEEEEechhhhhccHHHHHHHHHHh-CCceeecCCCCCCHHHHHHh--CCCcceecCCCccccccchhccccchHhhhCc
Confidence 4577888889988888999998888 89998776633333333333 6799999999876 3444321 111246
Q ss_pred CceEEEechhhHhh
Q 029993 76 NLVILVLDEADRLL 89 (184)
Q Consensus 76 ~l~~lVvDEaD~l~ 89 (184)
.+.|.|+||+|.++
T Consensus 290 ~~~fAIVDEvDSIL 303 (1112)
T PRK12901 290 KHNYAIVDEVDSVL 303 (1112)
T ss_pred CCceeEeechhhhh
Confidence 78899999999976
No 205
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=86.97 E-value=1 Score=42.42 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=30.2
Q ss_pred cCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhc
Q 029993 50 EGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLD 90 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~ 90 (184)
..+||||+....|+..+...+. -+-.-.++|+||||++-+
T Consensus 430 ~~AdivItNHalLl~dl~~~~~-ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 430 KFADLVITNHALLLTDLTSEEP-LLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred hcCCEEEECHHHHHHHHhhhcc-cCCCCCeEEEECCchHHH
Confidence 5689999999988877644122 234468999999999875
No 206
>PRK09694 helicase Cas3; Provisional
Probab=85.78 E-value=4.7 Score=37.86 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=48.3
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH------HHHHH-HcC----CcEeeechHHHHHHHHhc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD------VKKIE-EEG----ANLLIGTPGRLYDIMERM 69 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~l~-~~~----~~IlV~TP~~l~~~~~~~ 69 (184)
.++|+++|.+-|.++++.+++... ++..+.++++....... ....+ +++ ..|+|+|. + +.
T Consensus 562 ~vLVf~NTV~~Aq~ly~~L~~~~~--~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQ--V---iE-- 632 (878)
T PRK09694 562 QVCLICNLVDDAQKLYQRLKELNN--TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQ--V---VE-- 632 (878)
T ss_pred EEEEEECCHHHHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECc--c---hh--
Confidence 378999999999999999987532 24678888887654322 11111 112 36999995 2 22
Q ss_pred CCccCCCceEEEechh
Q 029993 70 DVLDFRNLVILVLDEA 85 (184)
Q Consensus 70 ~~~~~~~l~~lVvDEa 85 (184)
..+|+ ++.++|.|-+
T Consensus 633 ~GLDI-d~DvlItdla 647 (878)
T PRK09694 633 QSLDL-DFDWLITQLC 647 (878)
T ss_pred heeec-CCCeEEECCC
Confidence 45666 3567776644
No 207
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=85.72 E-value=1.3 Score=40.44 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=29.5
Q ss_pred cCCcEeeechHHHHHHHHh-cCCccCC-CceEEEechhhHhhc
Q 029993 50 EGANLLIGTPGRLYDIMER-MDVLDFR-NLVILVLDEADRLLD 90 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~-~~~~~~~-~l~~lVvDEaD~l~~ 90 (184)
..+||||+....|+.-+.. .+.+-.. +-..+|+||||+|-+
T Consensus 218 ~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 218 DEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred hhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 5789999999988766642 1222222 467899999999865
No 208
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.64 E-value=3.6 Score=37.27 Aligned_cols=79 Identities=18% Similarity=0.098 Sum_probs=50.9
Q ss_pred cEeeechHHHHHHHHhcCCccCCCceEEEechhhHh-hccc-hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCC
Q 029993 53 NLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRL-LDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR 130 (184)
Q Consensus 53 ~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l-~~~~-~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~ 130 (184)
-|=..|-|.|+.=+- ...++.+-..+++||||.= +..+ ....+..|.+ +.++-..++.|||+..+ -.+.|+.
T Consensus 357 vlKYMTDGmLlREfL--~epdLasYSViiiDEAHERTL~TDILfgLvKDIar-~RpdLKllIsSAT~DAe---kFS~fFD 430 (902)
T KOG0923|consen 357 VLKYMTDGMLLREFL--SEPDLASYSVIIVDEAHERTLHTDILFGLVKDIAR-FRPDLKLLISSATMDAE---KFSAFFD 430 (902)
T ss_pred eeeeecchhHHHHHh--ccccccceeEEEeehhhhhhhhhhHHHHHHHHHHh-hCCcceEEeeccccCHH---HHHHhcc
Confidence 355788888877554 3567899999999999962 1111 2233344433 33567899999999853 3556666
Q ss_pred CCeEEEE
Q 029993 131 NPVRIEV 137 (184)
Q Consensus 131 ~~~~i~~ 137 (184)
+.-.+.+
T Consensus 431 dapIF~i 437 (902)
T KOG0923|consen 431 DAPIFRI 437 (902)
T ss_pred CCcEEec
Confidence 5444443
No 209
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=85.44 E-value=4.3 Score=37.36 Aligned_cols=77 Identities=12% Similarity=0.134 Sum_probs=53.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcC-C--CceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTL-P--DVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDF 74 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~-~--~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~ 74 (184)
++||+++||..|..++..+++..... + +.++....||...++.. +...++..++||+|.. +. ..+|+
T Consensus 273 ~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~-----le--rGIDI 345 (742)
T TIGR03817 273 RTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNA-----LE--LGVDI 345 (742)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECch-----Hh--ccCCc
Confidence 47999999999999999888753321 1 35667777877654433 2344567899999972 11 46788
Q ss_pred CCceEEEech
Q 029993 75 RNLVILVLDE 84 (184)
Q Consensus 75 ~~l~~lVvDE 84 (184)
.++..+|.-+
T Consensus 346 ~~vd~VI~~~ 355 (742)
T TIGR03817 346 SGLDAVVIAG 355 (742)
T ss_pred ccccEEEEeC
Confidence 8888777544
No 210
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=85.39 E-value=1.2 Score=36.27 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=28.9
Q ss_pred CCCceEEEechhhHhhccc--hHHHHHHHHHhCCCCceEEEEee
Q 029993 74 FRNLVILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~--~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
--+++++|+||.|.++..+ -.....+.++.+.+.-|+-++.+
T Consensus 143 ~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 143 RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 3578999999999998764 33445566777777666444433
No 211
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=85.33 E-value=11 Score=28.58 Aligned_cols=103 Identities=10% Similarity=0.110 Sum_probs=49.1
Q ss_pred HHHHHHHHhhhcCCCceEEEEECCcchHH--HHHHHH----HcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhH
Q 029993 14 QIYHVAQPFISTLPDVKSMLLVGGVEVKA--DVKKIE----EEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADR 87 (184)
Q Consensus 14 Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~----~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~ 87 (184)
+..+.++++...- .-....++|..-.+. -...+. ..+.+++..+-..+...... -.-.+....++++||+|.
T Consensus 24 ~~~~~l~~~~~~~-~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~lLvIDdi~~ 101 (226)
T TIGR03420 24 ELLAALRQLAAGK-GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPE-VLEGLEQADLVCLDDVEA 101 (226)
T ss_pred HHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHH-HHhhcccCCEEEEeChhh
Confidence 3444455543222 345667777543222 122221 22345554444344322111 000134557899999998
Q ss_pred hhcc-chHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 88 LLDM-GFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 88 l~~~-~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
+-.. .....+..++.........++++++.+
T Consensus 102 l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 102 IAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred hcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 7543 235666666665432222445555543
No 212
>COG4889 Predicted helicase [General function prediction only]
Probab=85.29 E-value=4.5 Score=38.06 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=55.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHH-----------------------HHHH-HHHcCCcEeee
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKA-----------------------DVKK-IEEEGANLLIG 57 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------------------~~~~-l~~~~~~IlV~ 57 (184)
.|+|||+-.|-.|+.+.-..- +.. +++...++++..... .... -...+--|+.+
T Consensus 209 iL~LvPSIsLLsQTlrew~~~-~~l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFs 286 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQ-KEL-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFS 286 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhc-cCc-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEE
Confidence 589999999999996654442 123 577777776432210 0000 01245668888
Q ss_pred chHHHHHHHHhcCCccCCCceEEEechhhHhhc
Q 029993 58 TPGRLYDIMERMDVLDFRNLVILVLDEADRLLD 90 (184)
Q Consensus 58 TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~ 90 (184)
|-..+...-.. ...-+....+++.||||+..+
T Consensus 287 TYQSl~~i~eA-Qe~G~~~fDliicDEAHRTtG 318 (1518)
T COG4889 287 TYQSLPRIKEA-QEAGLDEFDLIICDEAHRTTG 318 (1518)
T ss_pred cccchHHHHHH-HHcCCCCccEEEecchhcccc
Confidence 88877665443 445577788999999999754
No 213
>PRK14701 reverse gyrase; Provisional
Probab=85.12 E-value=2.1 Score=42.82 Aligned_cols=69 Identities=26% Similarity=0.291 Sum_probs=46.7
Q ss_pred CEEEEeccHHHH---HHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeech---HHHHHHHHhcCCccC
Q 029993 1 MGMIISPTRELS---AQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTP---GRLYDIMERMDVLDF 74 (184)
Q Consensus 1 ~alIl~PtreLa---~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP---~~l~~~~~~~~~~~~ 74 (184)
++||.|||++-+ .++.+.+.+. ++++..++|+. ........++..+|+|||- +-+. ..+|+
T Consensus 332 ~gIVF~~t~~~~e~ae~la~~L~~~-----Gi~a~~~h~~R--~~~l~~F~~G~~~VLVaT~s~~gvaa------RGIDi 398 (1638)
T PRK14701 332 GGLIFVPIDEGAEKAEEIEKYLLED-----GFKIELVSAKN--KKGFDLFEEGEIDYLIGVATYYGTLV------RGLDL 398 (1638)
T ss_pred CeEEEEeccccchHHHHHHHHHHHC-----CCeEEEecchH--HHHHHHHHcCCCCEEEEecCCCCeeE------ecCcc
Confidence 478999998754 5555544442 78998888863 3444555578899999995 2122 46776
Q ss_pred CC-ceEEEe
Q 029993 75 RN-LVILVL 82 (184)
Q Consensus 75 ~~-l~~lVv 82 (184)
.+ ++++|.
T Consensus 399 P~~Vryvi~ 407 (1638)
T PRK14701 399 PERIRFAVF 407 (1638)
T ss_pred CCccCEEEE
Confidence 65 777776
No 214
>PRK05642 DNA replication initiation factor; Validated
Probab=85.10 E-value=2.2 Score=33.33 Aligned_cols=89 Identities=16% Similarity=0.218 Sum_probs=51.5
Q ss_pred eEEEEECCcc-hHHHH-HHH----HHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhcc-chHHHHHHHHH
Q 029993 30 KSMLLVGGVE-VKADV-KKI----EEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDM-GFQKQISYIIS 102 (184)
Q Consensus 30 ~~~~~~~~~~-~~~~~-~~l----~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~-~~~~~l~~i~~ 102 (184)
....++|+.. .+... ..+ ...+..++..+...+...... -.-.+.++.++++|++|.+-.. .+...+.++++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~-~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n 124 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPE-LLDNLEQYELVCLDDLDVIAGKADWEEALFHLFN 124 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHH-HHHhhhhCCEEEEechhhhcCChHHHHHHHHHHH
Confidence 4566777543 22222 221 234678888888777653221 0112556779999999987543 45667888887
Q ss_pred hCCCCceEEEEeeeCch
Q 029993 103 RLPKLRRTGLFSATQTE 119 (184)
Q Consensus 103 ~l~~~~q~i~~SAT~~~ 119 (184)
.+......++++++.++
T Consensus 125 ~~~~~g~~ilits~~~p 141 (234)
T PRK05642 125 RLRDSGRRLLLAASKSP 141 (234)
T ss_pred HHHhcCCEEEEeCCCCH
Confidence 77554334555555443
No 215
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=84.92 E-value=11 Score=33.43 Aligned_cols=110 Identities=13% Similarity=0.321 Sum_probs=79.8
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH---HHHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||.+-|+-+|....+.+.++ ++++..++++.+.-+. .+.++.+..||+||-. +++ ..+|+-.|.
T Consensus 449 vLVTtLTKkmAEdLT~Yl~e~-----gikv~YlHSdidTlER~eIirdLR~G~~DvLVGIN-----LLR--EGLDiPEVs 516 (663)
T COG0556 449 VLVTTLTKKMAEDLTEYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-----LLR--EGLDLPEVS 516 (663)
T ss_pred EEEEeehHHHHHHHHHHHHhc-----CceEEeeeccchHHHHHHHHHHHhcCCccEEEeeh-----hhh--ccCCCccee
Confidence 578888888888887777775 7899999998765444 3455567899999965 344 578999999
Q ss_pred EEEechhhHhhccchHHHHHHHHHhCCC-----CceEEEEeeeCchHHHHHHH
Q 029993 79 ILVLDEADRLLDMGFQKQISYIISRLPK-----LRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~~~l~~i~~~l~~-----~~q~i~~SAT~~~~v~~~~~ 126 (184)
++.+=+||. .||...-.++++-+++ +-.+|++.-.+++++.....
T Consensus 517 LVAIlDADK---eGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai~ 566 (663)
T COG0556 517 LVAILDADK---EGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAID 566 (663)
T ss_pred EEEEeecCc---cccccccchHHHHHHHHhhccCCeEEEEchhhhHHHHHHHH
Confidence 998888996 3555444455544443 34789988889888765444
No 216
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=84.05 E-value=5.2 Score=39.07 Aligned_cols=71 Identities=8% Similarity=0.149 Sum_probs=53.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHH-HcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE-EEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+||++|+++-+..+.+.+.+. .++...+..++|+.+..++..... .++..|||+|. +.. ..+++.+++++
T Consensus 289 ILVFLpg~~EIe~lae~L~~~--~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATN------IAE-tSITIpgI~yV 359 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKL--NLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATN------VAE-TSLTVPGIKYV 359 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhc--CCCcceEeecccCCCHHHHHHHhcccCCeeEEEecc------HHh-hccccCcceEE
Confidence 699999999999998888774 234566778889888766655442 23568999998 333 67889999988
Q ss_pred E
Q 029993 81 V 81 (184)
Q Consensus 81 V 81 (184)
|
T Consensus 360 I 360 (1294)
T PRK11131 360 I 360 (1294)
T ss_pred E
Confidence 7
No 217
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=83.15 E-value=3.3 Score=31.02 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=45.1
Q ss_pred CCceEEEechhhHhhccc--hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHh
Q 029993 75 RNLVILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~--~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~ 128 (184)
....++|+||+-..++.+ -.+.+.++++.-|...-+|+.+-..|+++.+++...
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~V 151 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLV 151 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCcee
Confidence 467799999999888766 456788889999998999999999999988877653
No 218
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=83.10 E-value=1.9 Score=34.34 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=33.0
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
..+-+.+|+||||.|.+. -...+++-++...+.+++.+...+..
T Consensus 111 ~grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQSE 154 (333)
T ss_pred CCceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcchh
Confidence 467789999999999765 57778887777777777766554443
No 219
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=83.07 E-value=2.7 Score=31.81 Aligned_cols=36 Identities=19% Similarity=0.438 Sum_probs=22.0
Q ss_pred cCCcEeeechHHHHHHHHhcCCcc-CC-CceEEEechhhHhhc
Q 029993 50 EGANLLIGTPGRLYDIMERMDVLD-FR-NLVILVLDEADRLLD 90 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~~~~~~-~~-~l~~lVvDEaD~l~~ 90 (184)
..++|+++|+..... ..+. +. ...++|+|||-.+..
T Consensus 169 ~~~~vi~~T~~~~~~-----~~~~~~~~~~d~vIvDEAsq~~e 206 (236)
T PF13086_consen 169 KEADVIFTTLSSAAS-----PFLSNFKEKFDVVIVDEASQITE 206 (236)
T ss_dssp HT-SEEEEETCGGG------CCGTT-----SEEEETTGGGS-H
T ss_pred ccccccccccccchh-----hHhhhhcccCCEEEEeCCCCcch
Confidence 478999999976622 2222 22 788999999988643
No 220
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.90 E-value=3.1 Score=39.11 Aligned_cols=80 Identities=18% Similarity=0.313 Sum_probs=57.6
Q ss_pred CceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhccchHHHHHHHHHhCCCC
Q 029993 28 DVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKL 107 (184)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~ 107 (184)
++.+-+-+||... +-...+ ++|-.=+|+-. .++.|+. |+.--+.|+||+|.-++.++-..+-++++.--+.
T Consensus 1065 GLEvkV~~G~iWK-eSL~EL-SGGQRSLVALs-LIlamL~------fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~ 1135 (1174)
T KOG0933|consen 1065 GLEVKVKFGGIWK-ESLSEL-SGGQRSLVALS-LILAMLK------FKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTH 1135 (1174)
T ss_pred ceEEEEEeCccHH-HHHHHh-cCchHHHHHHH-HHHHHHc------CCCCceeehhhhHHhhcchhhhhHHHHHHhhCCC
Confidence 3556666666553 445555 56666666654 3444443 3445589999999999999999999999988888
Q ss_pred ceEEEEeee
Q 029993 108 RRTGLFSAT 116 (184)
Q Consensus 108 ~q~i~~SAT 116 (184)
.|+|.+|=.
T Consensus 1136 sQFIVVSLK 1144 (1174)
T KOG0933|consen 1136 SQFIVVSLK 1144 (1174)
T ss_pred CeEEEEEch
Confidence 999999854
No 221
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=82.82 E-value=19 Score=27.55 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=48.3
Q ss_pred CceEEEEECCcchHH--HHHHH----HHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhccchHHHHHHHH
Q 029993 28 DVKSMLLVGGVEVKA--DVKKI----EEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYII 101 (184)
Q Consensus 28 ~~~~~~~~~~~~~~~--~~~~l----~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~ 101 (184)
......++|....++ -...+ ...+..+++.+...+...+.. ..+...+++||+|.+-. .-...+..++
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~liiDdi~~l~~-~~~~~L~~~~ 114 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDF-----DPEAELYAVDDVERLDD-AQQIALFNLF 114 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhh-----cccCCEEEEeChhhcCc-hHHHHHHHHH
Confidence 345677777543222 22222 234567777777665543321 33567899999998643 3345566666
Q ss_pred HhCCCCce-EEEEeeeCch
Q 029993 102 SRLPKLRR-TGLFSATQTE 119 (184)
Q Consensus 102 ~~l~~~~q-~i~~SAT~~~ 119 (184)
+....... +++++++.++
T Consensus 115 ~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 115 NRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred HHHHHcCCcEEEEeCCCCH
Confidence 65543333 4677777654
No 222
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=82.74 E-value=3.3 Score=30.60 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=45.3
Q ss_pred CCCceEEEechhhHhhccc--hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHh
Q 029993 74 FRNLVILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~--~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~ 128 (184)
-....++|+||+-..+..+ -.+.+.++++.-|...-+|+.+-..|+++.+++...
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~V 149 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLV 149 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCcee
Confidence 4567899999998887765 467888899999998899999999999988877653
No 223
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=82.57 E-value=6.1 Score=38.60 Aligned_cols=71 Identities=11% Similarity=0.169 Sum_probs=53.8
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHc-CCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEE-GANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+||++|+++-+.++.+.+.+.. .+++.+..++|+.+..++....... +-.|||+|. +.. ..+++.+++++
T Consensus 282 ILVFLpg~~EI~~l~~~L~~~~--~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATN------IAE-tSLTIpgV~yV 352 (1283)
T TIGR01967 282 ILIFLPGEREIRDAAEILRKRN--LRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATN------VAE-TSLTVPGIHYV 352 (1283)
T ss_pred EEEeCCCHHHHHHHHHHHHhcC--CCCcEEEeccCCCCHHHHHHHhCCCCCceEEEecc------HHH-hccccCCeeEE
Confidence 6999999999999988887653 3467888899988877766554322 358999998 233 67888899987
Q ss_pred E
Q 029993 81 V 81 (184)
Q Consensus 81 V 81 (184)
|
T Consensus 353 I 353 (1283)
T TIGR01967 353 I 353 (1283)
T ss_pred E
Confidence 6
No 224
>PRK01172 ski2-like helicase; Provisional
Probab=82.49 E-value=10 Score=34.42 Aligned_cols=77 Identities=8% Similarity=0.146 Sum_probs=47.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCC--------------------ceEEEEECCcchHHHHH---HHHHcCCcEeee
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPD--------------------VKSMLLVGGVEVKADVK---KIEEEGANLLIG 57 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~--------------------~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~ 57 (184)
++||++|||.-|..+...+.+.....+. ..+...+||.+..++.. ...++...|||+
T Consensus 238 ~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLva 317 (674)
T PRK01172 238 QVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVA 317 (674)
T ss_pred cEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEe
Confidence 4799999999999988877765432211 13566677766544332 222457899999
Q ss_pred chHHHHHHHHhcCCccCCCceEEEechh
Q 029993 58 TPGRLYDIMERMDVLDFRNLVILVLDEA 85 (184)
Q Consensus 58 TP~~l~~~~~~~~~~~~~~l~~lVvDEa 85 (184)
|.. +. ..+|+... .+|++..
T Consensus 318 T~~-la------~Gvnipa~-~VII~~~ 337 (674)
T PRK01172 318 TPT-LA------AGVNLPAR-LVIVRDI 337 (674)
T ss_pred cch-hh------ccCCCcce-EEEEcCc
Confidence 972 22 35665554 4555543
No 225
>PRK06893 DNA replication initiation factor; Validated
Probab=82.44 E-value=3.2 Score=32.24 Aligned_cols=70 Identities=10% Similarity=0.082 Sum_probs=40.5
Q ss_pred cCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhcc-chHHHHHHHHHhCCC-CceEEEEeeeCchH
Q 029993 50 EGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDM-GFQKQISYIISRLPK-LRRTGLFSATQTEA 120 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~-~~~~~l~~i~~~l~~-~~q~i~~SAT~~~~ 120 (184)
.+..+...+.......... -.-.+++...+++||+|.+... .+...+..+++.+.. ..+++++|++.+++
T Consensus 66 ~~~~~~y~~~~~~~~~~~~-~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 66 NQRTAIYIPLSKSQYFSPA-VLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cCCCeEEeeHHHhhhhhHH-HHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 3456666555432221111 0112567889999999988643 345566666666643 34666777776554
No 226
>PRK08084 DNA replication initiation factor; Provisional
Probab=82.31 E-value=12 Score=29.17 Aligned_cols=100 Identities=8% Similarity=0.062 Sum_probs=51.4
Q ss_pred CceEEEEECCcchH-HHHH-----HHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhcc-chHHHHHHH
Q 029993 28 DVKSMLLVGGVEVK-ADVK-----KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDM-GFQKQISYI 100 (184)
Q Consensus 28 ~~~~~~~~~~~~~~-~~~~-----~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~-~~~~~l~~i 100 (184)
+.....++|....+ .... .+...+..+...+.......... -.-.+.+..++++||+|.+-.. .+...+..+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~-~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l 122 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPE-VLEGMEQLSLVCIDNIECIAGDELWEMAIFDL 122 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHH-HHHHhhhCCEEEEeChhhhcCCHHHHHHHHHH
Confidence 34567788764322 2221 12223556666665543322111 0001344578999999987543 356666677
Q ss_pred HHhCCC--CceEEEEeeeCchH----HHHHHHHh
Q 029993 101 ISRLPK--LRRTGLFSATQTEA----VEELSKAG 128 (184)
Q Consensus 101 ~~~l~~--~~q~i~~SAT~~~~----v~~~~~~~ 128 (184)
++.+.. ..++++.|...|.+ ..++.+++
T Consensus 123 ~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl 156 (235)
T PRK08084 123 YNRILESGRTRLLITGDRPPRQLNLGLPDLASRL 156 (235)
T ss_pred HHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHH
Confidence 766533 24666655444433 23455553
No 227
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=82.13 E-value=6.9 Score=37.75 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=50.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
++|.|.||.-+.++...+... ++++..++||.+..+... ...++..+|||||-. + . ..+|..+++
T Consensus 683 gIIYC~SRke~E~LAe~L~~~-----Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdA-----F-G-MGIDkPDVR 750 (1195)
T PLN03137 683 GIIYCLSRMDCEKVAERLQEF-----GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVA-----F-G-MGINKPDVR 750 (1195)
T ss_pred ceeEeCchhHHHHHHHHHHHC-----CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEech-----h-h-cCCCccCCc
Confidence 689999999998888877653 678888899876554432 333467899999973 1 1 467888888
Q ss_pred EEE
Q 029993 79 ILV 81 (184)
Q Consensus 79 ~lV 81 (184)
++|
T Consensus 751 ~VI 753 (1195)
T PLN03137 751 FVI 753 (1195)
T ss_pred EEE
Confidence 887
No 228
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=81.95 E-value=10 Score=32.16 Aligned_cols=116 Identities=14% Similarity=0.167 Sum_probs=70.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
|++|+|-|+.-|.-++..+..- +-.|.+++|+....+... ....+...|+|+|.- + - +.+|...+
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~-----Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV-~-----A-RGiDv~qV 399 (477)
T KOG0332|consen 332 QSIIFCHTKATAMWLYEEMRAE-----GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNV-C-----A-RGIDVAQV 399 (477)
T ss_pred heEEEEeehhhHHHHHHHHHhc-----CceeEEeeccchhHHHHHHHHHHhcCcceEEEEech-h-----h-cccccceE
Confidence 6899999999999999888875 456888888776544432 223466899999973 1 1 67888888
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCC----ceEE---EEeeeCchHHHHHHHHhCC
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKL----RRTG---LFSATQTEAVEELSKAGLR 130 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~----~q~i---~~SAT~~~~v~~~~~~~~~ 130 (184)
.++|=- |.=.+.+-+++-..-+-++++. +.-+ +.-..++.++..-+..|++
T Consensus 400 s~VvNy--dlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~ 457 (477)
T KOG0332|consen 400 SVVVNY--DLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFN 457 (477)
T ss_pred EEEEec--CCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHh
Confidence 887732 2112222233444444444331 2223 3333455666666666664
No 229
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=81.82 E-value=4.6 Score=37.50 Aligned_cols=65 Identities=23% Similarity=0.248 Sum_probs=43.9
Q ss_pred cCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhccchHHHHHHHHHhC-------CC------CceEEEEeee
Q 029993 50 EGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRL-------PK------LRRTGLFSAT 116 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l-------~~------~~q~i~~SAT 116 (184)
....|-..|-|-|+.=+.+ .+-++.-..+|+||||.= +. +-+-+.-+++++ .+ .-..|++|||
T Consensus 348 e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHER-Sv-nTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSAT 423 (1172)
T KOG0926|consen 348 EDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHER-SV-NTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSAT 423 (1172)
T ss_pred CCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhc-cc-hHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeee
Confidence 4568999999999988875 677888899999999962 11 222222222222 11 2358999999
Q ss_pred Cc
Q 029993 117 QT 118 (184)
Q Consensus 117 ~~ 118 (184)
+-
T Consensus 424 LR 425 (1172)
T KOG0926|consen 424 LR 425 (1172)
T ss_pred EE
Confidence 85
No 230
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=81.09 E-value=2.4 Score=34.74 Aligned_cols=57 Identities=16% Similarity=0.259 Sum_probs=41.7
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCC-------CCceEEEEeeeCchHHHHHHHHhCCC
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLRN 131 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~-------~~~q~i~~SAT~~~~v~~~~~~~~~~ 131 (184)
-..=..+|+||+|.|-. +..+.+.-.+.+.| ++.-+|++|.+-..++.+++..+.++
T Consensus 176 ~C~rslFIFDE~DKmp~-gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~ 239 (344)
T KOG2170|consen 176 ACQRSLFIFDEVDKLPP-GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENARN 239 (344)
T ss_pred hcCCceEEechhhhcCH-hHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHHc
Confidence 34445899999999743 45666666666554 34578999999999988888777664
No 231
>PF13173 AAA_14: AAA domain
Probab=80.89 E-value=3.8 Score=28.56 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=30.0
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCch
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~ 119 (184)
.-.++++||++.+- ++...++.+...- ++.++++.+.....
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii~tgS~~~~ 101 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKIILTGSSSSL 101 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEEEEccchHH
Confidence 45689999999873 5788888888855 45777776655443
No 232
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=80.29 E-value=0.9 Score=42.80 Aligned_cols=120 Identities=23% Similarity=0.238 Sum_probs=74.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhc-CCccCCCceEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM-DVLDFRNLVIL 80 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~-~~~~~~~l~~l 80 (184)
+++++|-..|...-.+.-.+.. +.|++++.-+.|+...+ .... ..++++|+||.+.....+.- ..-.+.++..+
T Consensus 976 vvyIap~kalvker~~Dw~~r~-~~~g~k~ie~tgd~~pd--~~~v--~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~i 1050 (1230)
T KOG0952|consen 976 VVYIAPDKALVKERSDDWSKRD-ELPGIKVIELTGDVTPD--VKAV--READIVITTPEKWDGISRSWQTRKYVQSVSLI 1050 (1230)
T ss_pred EEEEcCCchhhcccccchhhhc-ccCCceeEeccCccCCC--hhhe--ecCceEEcccccccCccccccchhhhccccce
Confidence 5788888887776655555442 34678888888877654 2233 46899999999877665521 23347899999
Q ss_pred EechhhHhhccchHHHHHHHHHhC-------CCCceEEEEeeeCchHHHHHHHHh
Q 029993 81 VLDEADRLLDMGFQKQISYIISRL-------PKLRRTGLFSATQTEAVEELSKAG 128 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l-------~~~~q~i~~SAT~~~~v~~~~~~~ 128 (184)
|+||.|.+ +.++++-+..+.+.. ++..|.+.+|--+ .....+++|.
T Consensus 1051 v~de~hll-g~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~-~na~dla~wl 1103 (1230)
T KOG0952|consen 1051 VLDEIHLL-GEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTAL-ANANDLADWL 1103 (1230)
T ss_pred eecccccc-cCCCcceEEEEeeccccCccccCcchhhhhHhhhh-hccHHHHHHh
Confidence 99999965 444455444444333 2334555554333 3335555553
No 233
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=79.70 E-value=2.3 Score=41.05 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=51.2
Q ss_pred HcCCcEeeechHHHHHHHHh-cC-------------CccCCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 49 EEGANLLIGTPGRLYDIMER-MD-------------VLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 49 ~~~~~IlV~TP~~l~~~~~~-~~-------------~~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
..|..|.+..|+.=..-+.. +| ...++..-|.|+||+|.-+|.....-+..+++.+.++.|+|+.|
T Consensus 1047 ~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIT 1126 (1163)
T COG1196 1047 TAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVIT 1126 (1163)
T ss_pred hcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEE
Confidence 46888888888874332211 00 12256677999999999999988999999999999999999985
Q ss_pred ee
Q 029993 115 AT 116 (184)
Q Consensus 115 AT 116 (184)
--
T Consensus 1127 hr 1128 (1163)
T COG1196 1127 HR 1128 (1163)
T ss_pred cC
Confidence 43
No 234
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=79.53 E-value=5.1 Score=30.52 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=45.5
Q ss_pred CCceEEEechhhHhhccc--hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHh
Q 029993 75 RNLVILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~--~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~ 128 (184)
....++|+||+-..++.+ -.+.+.++++.-|...-+|+..-..|+++.+++...
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlV 169 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLV 169 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchh
Confidence 467799999999988876 367888889988888899999999999988877764
No 235
>KOG1556 consensus 26S proteasome regulatory complex, subunit RPN8/PSMD7 [Posttranslational modification, protein turnover, chaperones]
Probab=79.50 E-value=6.9 Score=30.98 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=46.5
Q ss_pred HhhccchHHHHHHHHHhCCCCceEEEEeeeCch------HHHHHHHHhCCCCeEEEEccC
Q 029993 87 RLLDMGFQKQISYIISRLPKLRRTGLFSATQTE------AVEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 87 ~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~------~v~~~~~~~~~~~~~i~~~~~ 140 (184)
.+++.+|.+.+..++.....+-.++.|-.|=|. .+.++.++|+++|+.+.++..
T Consensus 69 WFlDh~Y~esM~~mfkKvNakekivGWYhTGPkl~~nDl~In~l~k~y~pnpvLvIIdvk 128 (309)
T KOG1556|consen 69 WFLDHNYIESMFGMFKKVNAKEKVVGWYHTGPKLRENDLDINELLKRYVPNPVLVIIDVK 128 (309)
T ss_pred EEeccHHHHHHHHHHHHhcchhheeeeeccCCccccchhhHHHHHhhcCCCceEEEEecc
Confidence 467888999999999999988999999988652 477899999999999988775
No 236
>PRK06620 hypothetical protein; Validated
Probab=79.01 E-value=27 Score=26.85 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=62.0
Q ss_pred EEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcc-hHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEe
Q 029993 4 IISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVE-VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVL 82 (184)
Q Consensus 4 Il~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVv 82 (184)
|+.++-+.|........+-....|-.....++|... .+.....+....++..+.+...... . ...+...+++
T Consensus 19 vvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~-----~--~~~~~d~lli 91 (214)
T PRK06620 19 IVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE-----E--ILEKYNAFII 91 (214)
T ss_pred EecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch-----h--HHhcCCEEEE
Confidence 566766766666555443111111125577887653 3333333334444544444322211 0 1234568999
Q ss_pred chhhHhhccchHHHHHHHHHhCCC-CceEEEEeeeCchH--HHHHHHHhCCCCeEEEEccC
Q 029993 83 DEADRLLDMGFQKQISYIISRLPK-LRRTGLFSATQTEA--VEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 83 DEaD~l~~~~~~~~l~~i~~~l~~-~~q~i~~SAT~~~~--v~~~~~~~~~~~~~i~~~~~ 140 (184)
||+|.+- ...+-.+++.+.. ..|+++.|.|.|+. +.++.++. ..-..+.+..-
T Consensus 92 Ddi~~~~----~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl-~~gl~~~l~~p 147 (214)
T PRK06620 92 EDIENWQ----EPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRI-KSVLSILLNSP 147 (214)
T ss_pred eccccch----HHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHH-hCCceEeeCCC
Confidence 9999642 2344455555533 35666666666664 33344443 33344555444
No 237
>PRK06835 DNA replication protein DnaC; Validated
Probab=78.97 E-value=36 Score=28.21 Aligned_cols=130 Identities=15% Similarity=0.217 Sum_probs=73.1
Q ss_pred cHHHHHHHHHHHHHhhhcCC-CceEEEEECCcchH-HH-----HHHHHHcCCcEeeechHHHHHHHHhc---CC------
Q 029993 8 TRELSAQIYHVAQPFISTLP-DVKSMLLVGGVEVK-AD-----VKKIEEEGANLLIGTPGRLYDIMERM---DV------ 71 (184)
Q Consensus 8 treLa~Qi~~~~~~l~~~~~-~~~~~~~~~~~~~~-~~-----~~~l~~~~~~IlV~TP~~l~~~~~~~---~~------ 71 (184)
.++-..++.+.+.++...+. +-....++|+...+ .. ...+...+..|+..|...+.+.+... ..
T Consensus 161 ~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~ 240 (329)
T PRK06835 161 PRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEV 240 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHH
Confidence 35566667776666665331 23567777754322 11 22334467888888888887766431 11
Q ss_pred -ccCCCceEEEechhhHhhccch-HHHHHHHHHhCCC-CceEEEEeeeCch-HHH-----HHHHHhCCCCeEEEEc
Q 029993 72 -LDFRNLVILVLDEADRLLDMGF-QKQISYIISRLPK-LRRTGLFSATQTE-AVE-----ELSKAGLRNPVRIEVR 138 (184)
Q Consensus 72 -~~~~~l~~lVvDEaD~l~~~~~-~~~l~~i~~~l~~-~~q~i~~SAT~~~-~v~-----~~~~~~~~~~~~i~~~ 138 (184)
-.+.++.+||+|+........+ ...+-.++...-. ...+|+ |..+++ ++. .+.+........+.+.
T Consensus 241 ~~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIi-TSNl~~~el~~~~~eri~SRL~~~~~~i~~~ 315 (329)
T PRK06835 241 YDLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMII-STNLSLEELLKTYSERISSRLLGNFTLLKFY 315 (329)
T ss_pred HHHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHhHHHHHHHHcCCEEEEec
Confidence 1256889999999987654433 3455566655433 344554 555543 332 3555665566555553
No 238
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=78.79 E-value=5.4 Score=30.04 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=44.7
Q ss_pred CCceEEEechhhHhhccc--hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHH
Q 029993 75 RNLVILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~--~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~ 127 (184)
....++|+||+-..++.+ -.+.+..+++.-|...-+|+..-..|+++.+++..
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD~ 168 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIADQ 168 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCCe
Confidence 567899999999988876 46778888999899889999999999988877654
No 239
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=78.74 E-value=15 Score=35.00 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=52.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHH--HH---cCCcEeeechHHHHHHHHhcCCccCCC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI--EE---EGANLLIGTPGRLYDIMERMDVLDFRN 76 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~---~~~~IlV~TP~~l~~~~~~~~~~~~~~ 76 (184)
+||++.+++-+..+.+.+... . ++++..++|+.+..+....+ +. +++.|+|+|- +.. ..+|+..
T Consensus 496 vLVF~~~~~t~~~L~~~L~~~---~-Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd------vgs-eGlNlq~ 564 (956)
T PRK04914 496 VLVICAKAATALQLEQALRER---E-GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE------IGS-EGRNFQF 564 (956)
T ss_pred EEEEeCcHHHHHHHHHHHhhc---c-CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech------hhc-cCCCccc
Confidence 789999999999999888543 2 67899999988765443333 22 2689999994 222 6788888
Q ss_pred ceEEEechh
Q 029993 77 LVILVLDEA 85 (184)
Q Consensus 77 l~~lVvDEa 85 (184)
+..+|.=+.
T Consensus 565 a~~VInfDl 573 (956)
T PRK04914 565 ASHLVLFDL 573 (956)
T ss_pred ccEEEEecC
Confidence 888875443
No 240
>PHA02558 uvsW UvsW helicase; Provisional
Probab=78.43 E-value=12 Score=32.76 Aligned_cols=71 Identities=13% Similarity=0.214 Sum_probs=48.8
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHH--HH-HcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK--IE-EEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--l~-~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
.+|++.+.+=|..+.+.+++. +.++..++|+.+.++.... .. ++...|+|+|-+.+. ..+|+.++.
T Consensus 347 ~lV~~~~~~h~~~L~~~L~~~-----g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~------eG~Dip~ld 415 (501)
T PHA02558 347 TFVMFKYVEHGKPLYEMLKKV-----YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFS------TGISIKNLH 415 (501)
T ss_pred EEEEEEEHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceec------ccccccccc
Confidence 578888888777777666663 5688999998775544321 22 234578999975444 467888898
Q ss_pred EEEec
Q 029993 79 ILVLD 83 (184)
Q Consensus 79 ~lVvD 83 (184)
.+|+.
T Consensus 416 ~vIl~ 420 (501)
T PHA02558 416 HVIFA 420 (501)
T ss_pred EEEEe
Confidence 88864
No 241
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=78.25 E-value=6.5 Score=29.41 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=38.9
Q ss_pred CCCceEEEechhhHhhccc--hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHh
Q 029993 74 FRNLVILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~--~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~ 128 (184)
-....++|+||+-..++.+ -.+.+..+++.-|...-+|+..-..|+++.+.+...
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADlV 150 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADLV 150 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SEE
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCee
Confidence 3567799999999888876 467788889988889999999999999988877653
No 242
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=78.13 E-value=4 Score=29.96 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=41.8
Q ss_pred CCcEeeechHH---------HHHHHHhcCCc-cCCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 51 GANLLIGTPGR---------LYDIMERMDVL-DFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 51 ~~~IlV~TP~~---------l~~~~~~~~~~-~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
.+|+.+-.|.. +.++......- .-..-+++|+||||.|-.. -...+...++.-|..+.+++.+....
T Consensus 67 ~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 67 HPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CcceEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 57888777653 23333331111 1246889999999998655 46666677777777778887765544
No 243
>PRK13766 Hef nuclease; Provisional
Probab=77.89 E-value=13 Score=34.27 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=50.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECC--------cchHHH---HHHHHHcCCcEeeechHHHHHHHHhcC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGG--------VEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMD 70 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~---~~~l~~~~~~IlV~TP~~l~~~~~~~~ 70 (184)
+||++.++.-|.++.+.+... ++++..+.|. ....++ .....++..+++|+|.. -. .
T Consensus 368 vlIF~~~~~t~~~L~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~------~~-e 435 (773)
T PRK13766 368 IIVFTQYRDTAEKIVDLLEKE-----GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSV------AE-E 435 (773)
T ss_pred EEEEeCcHHHHHHHHHHHHhC-----CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECCh------hh-c
Confidence 799999999999999988653 4566667664 222222 22233456899999971 12 5
Q ss_pred CccCCCceEEEechhh
Q 029993 71 VLDFRNLVILVLDEAD 86 (184)
Q Consensus 71 ~~~~~~l~~lVvDEaD 86 (184)
.+|+.++.++|+-+.+
T Consensus 436 Gldi~~~~~VI~yd~~ 451 (773)
T PRK13766 436 GLDIPSVDLVIFYEPV 451 (773)
T ss_pred CCCcccCCEEEEeCCC
Confidence 7888999999987664
No 244
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=77.39 E-value=13 Score=34.13 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=55.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECC--------cchHHHHH---HHHHcCCcEeeechHHHHHHHHhc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGG--------VEVKADVK---KIEEEGANLLIGTPGRLYDIMERM 69 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~ 69 (184)
.++|.|-||+.|..+..++..+.. ++++...++|- .+...|.. .-.++..+|||||. +..
T Consensus 415 R~IIFve~R~sa~~l~~~l~~~~~--~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATS------V~E- 485 (746)
T KOG0354|consen 415 RTIIFVETRESALALKKWLLQLHE--LGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATS------VAE- 485 (746)
T ss_pred cEEEEEehHHHHHHHHHHHHhhhh--cccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEec------chh-
Confidence 378999999999999999998532 36787777763 23333333 33457799999998 344
Q ss_pred CCccCCCceEEEechh
Q 029993 70 DVLDFRNLVILVLDEA 85 (184)
Q Consensus 70 ~~~~~~~l~~lVvDEa 85 (184)
.++|.-.+.++|-=++
T Consensus 486 EGLDI~ec~lVIcYd~ 501 (746)
T KOG0354|consen 486 EGLDIGECNLVICYDY 501 (746)
T ss_pred ccCCcccccEEEEecC
Confidence 7889888888876554
No 245
>PLN03025 replication factor C subunit; Provisional
Probab=77.28 E-value=3.9 Score=33.42 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=28.2
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
.+.+.+++||+|.|.... ...+...++..++.+.+++.+.
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~n 137 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALACN 137 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEeC
Confidence 457899999999986543 5666677776666666665443
No 246
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=77.02 E-value=14 Score=30.20 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=48.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH---HHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
||+|+|.|+.-+.-..+-++. . ++.+...+|+...++. +...++....|+|+|-- .. +.+|...+
T Consensus 268 QavIFcnTk~kVdwLtekm~~----~-nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDV------wa-RGiDv~qV 335 (400)
T KOG0328|consen 268 QAVIFCNTKRKVDWLTEKMRE----A-NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDV------WA-RGIDVQQV 335 (400)
T ss_pred eEEEEecccchhhHHHHHHHh----h-CceeeeccCCcchhHHHHHHHHhhcCCceEEEEech------hh-ccCCccee
Confidence 799999999877666554444 2 6788888888765444 23344578899999972 23 67888888
Q ss_pred eEEE
Q 029993 78 VILV 81 (184)
Q Consensus 78 ~~lV 81 (184)
..+|
T Consensus 336 slvi 339 (400)
T KOG0328|consen 336 SLVI 339 (400)
T ss_pred EEEE
Confidence 7776
No 247
>PRK04195 replication factor C large subunit; Provisional
Probab=76.85 E-value=42 Score=29.16 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEECCcchH--HHHHHHH-HcCCcEeeech------HHHHHHHHhcC-Ccc-C-CCc
Q 029993 10 ELSAQIYHVAQPFISTLPDVKSMLLVGGVEVK--ADVKKIE-EEGANLLIGTP------GRLYDIMERMD-VLD-F-RNL 77 (184)
Q Consensus 10 eLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~l~-~~~~~IlV~TP------~~l~~~~~~~~-~~~-~-~~l 77 (184)
+...++...+..+.... ..+..+++|....+ .-...+. .-+.+++..++ ..+...+.... ... + ..-
T Consensus 21 ~~~~~l~~~l~~~~~g~-~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~ 99 (482)
T PRK04195 21 KAKEQLREWIESWLKGK-PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARR 99 (482)
T ss_pred HHHHHHHHHHHHHhcCC-CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCC
Confidence 44456666666654333 26778888865432 2223332 23455665543 22333332211 111 2 256
Q ss_pred eEEEechhhHhhc
Q 029993 78 VILVLDEADRLLD 90 (184)
Q Consensus 78 ~~lVvDEaD~l~~ 90 (184)
+++|+||+|.|..
T Consensus 100 kvIiIDEaD~L~~ 112 (482)
T PRK04195 100 KLILLDEVDGIHG 112 (482)
T ss_pred eEEEEecCccccc
Confidence 7999999999865
No 248
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=76.59 E-value=8.1 Score=35.56 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=39.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHH-------HHcCCcEeeech
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI-------EEEGANLLIGTP 59 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~IlV~TP 59 (184)
++||+.|...|..+|..++..+ . +++++++........... ..+++.|+|||.
T Consensus 443 vlvI~NTV~~Aie~Y~~Lk~~~----~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQ 502 (733)
T COG1203 443 VLVIVNTVDRAIELYEKLKEKG----P-KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQ 502 (733)
T ss_pred EEEEEecHHHHHHHHHHHHhcC----C-CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEee
Confidence 6899999999999999999864 2 788888765543332222 135789999997
No 249
>PF15586 Imm47: Immunity protein 47
Probab=76.51 E-value=7.4 Score=27.15 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=34.7
Q ss_pred cCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhccchHHHHHHHHHhCC
Q 029993 50 EGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLP 105 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~ 105 (184)
...++.||||..|.+...+ +.+ +-.=.+||++|.|.= .-...+.+++.++.
T Consensus 43 d~F~v~VcTP~wL~~~~~~-~~~-~~gr~~LIv~~yd~~---~I~~~i~~~i~~c~ 93 (116)
T PF15586_consen 43 DYFQVFVCTPKWLSKNCWK-PGI-LWGRHMLIVEEYDYD---EIKKTIERIIESCE 93 (116)
T ss_pred ceEEEEEEcHHHHHHhhcC-Ccc-eeccceEEEecCCHH---HHHHHHHHHHHHcc
Confidence 3478999999999987765 321 233358999998741 24566677777663
No 250
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=76.38 E-value=9.4 Score=33.24 Aligned_cols=72 Identities=11% Similarity=0.112 Sum_probs=52.8
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
-+|.|-|++-|.++...+... ++....++|.....++.. ...+..++++|+|. +.. +.+|.++|+
T Consensus 340 tlvFvEt~~~~d~l~~~l~~~-----~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~------Vaa-RGlDi~~V~ 407 (482)
T KOG0335|consen 340 TLVFVETKRGADELAAFLSSN-----GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATN------VAA-RGLDIPNVK 407 (482)
T ss_pred EEEEeeccchhhHHHHHHhcC-----CCCceeecchhhhhHHHHHHHHhhcCCcceEEEeh------hhh-cCCCCCCCc
Confidence 478899999999987776653 567778888766544433 33457899999998 233 789999999
Q ss_pred EEEechh
Q 029993 79 ILVLDEA 85 (184)
Q Consensus 79 ~lVvDEa 85 (184)
.+|.-+.
T Consensus 408 hVInyDm 414 (482)
T KOG0335|consen 408 HVINYDM 414 (482)
T ss_pred eeEEeec
Confidence 9986443
No 251
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=75.84 E-value=2.7 Score=31.61 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=37.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
++|-+|+.+=+..+++.+..-.+.. +.+. ...........+...+..|-.-.|..+...-. ...++|
T Consensus 29 I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~----~~~~~~~~~~~~~~~~~~i~f~~Pd~l~~~~~--------~~Dlli 95 (177)
T PF05127_consen 29 ILVTAPSPENVQTLFEFAEKGLKAL-GYKE----EKKKRIGQIIKLRFNKQRIEFVAPDELLAEKP--------QADLLI 95 (177)
T ss_dssp EEEE-SS--S-HHHHHCC-------------------------------CCC--B--HHHHCCT------------SCEE
T ss_pred EEEecCCHHHHHHHHHHHHhhcccc-cccc----ccccccccccccccccceEEEECCHHHHhCcC--------CCCEEE
Confidence 4667788887777766555433322 2221 00000011111222356777777765554321 236899
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
||||=.+- .+.+..+++.. -.++||.|..
T Consensus 96 VDEAAaIp----~p~L~~ll~~~----~~vv~stTi~ 124 (177)
T PF05127_consen 96 VDEAAAIP----LPLLKQLLRRF----PRVVFSTTIH 124 (177)
T ss_dssp ECTGGGS-----HHHHHHHHCCS----SEEEEEEEBS
T ss_pred EechhcCC----HHHHHHHHhhC----CEEEEEeecc
Confidence 99996542 44555555433 3577788864
No 252
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=75.51 E-value=18 Score=36.07 Aligned_cols=75 Identities=9% Similarity=0.149 Sum_probs=47.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhc--------------C--------------CCceEEEEECCcchHHHH---HHHHH
Q 029993 1 MGMIISPTRELSAQIYHVAQPFIST--------------L--------------PDVKSMLLVGGVEVKADV---KKIEE 49 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~--------------~--------------~~~~~~~~~~~~~~~~~~---~~l~~ 49 (184)
++||+|+||..|..+...++++... + +...+...+|+.+.++.. ..+.+
T Consensus 246 stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~ 325 (1490)
T PRK09751 246 STIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKS 325 (1490)
T ss_pred CEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHh
Confidence 4799999999999999999876421 0 011234555666544332 23445
Q ss_pred cCCcEeeechHHHHHHHHhcCCccCCCceEEEe
Q 029993 50 EGANLLIGTPGRLYDIMERMDVLDFRNLVILVL 82 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVv 82 (184)
+...++|||.. +- -.+|+..+..+|.
T Consensus 326 G~LrvLVATss-LE------LGIDIg~VDlVIq 351 (1490)
T PRK09751 326 GELRCVVATSS-LE------LGIDMGAVDLVIQ 351 (1490)
T ss_pred CCceEEEeCcH-HH------ccCCcccCCEEEE
Confidence 67888888873 21 3566666666664
No 253
>PRK06526 transposase; Provisional
Probab=75.46 E-value=11 Score=30.03 Aligned_cols=92 Identities=11% Similarity=0.078 Sum_probs=54.8
Q ss_pred HcCCcEeeechHHHHHHHHhc---CCc-----cCCCceEEEechhhHhhccc-hHHHHHHHHHhCCCCceEEEEeeeCch
Q 029993 49 EEGANLLIGTPGRLYDIMERM---DVL-----DFRNLVILVLDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQTE 119 (184)
Q Consensus 49 ~~~~~IlV~TP~~l~~~~~~~---~~~-----~~~~l~~lVvDEaD~l~~~~-~~~~l~~i~~~l~~~~q~i~~SAT~~~ 119 (184)
..+..++..|...+.+.+... +.+ .+.+..++|+||++..-... -...+..++...-....+++.|...+.
T Consensus 124 ~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~ 203 (254)
T PRK06526 124 QAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFG 203 (254)
T ss_pred HCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHH
Confidence 457788888888777666421 111 25667899999999764322 233455555443233457776666554
Q ss_pred HHH----------HHHHHhCCCCeEEEEccC
Q 029993 120 AVE----------ELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 120 ~v~----------~~~~~~~~~~~~i~~~~~ 140 (184)
+.. .+.++.++....+.+..+
T Consensus 204 ~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~ 234 (254)
T PRK06526 204 RWGEVFGDDVVAAAMIDRLVHHAEVISLKGD 234 (254)
T ss_pred HHHHHcCChHHHHHHHHHHhcCceEEeecCC
Confidence 432 245666667777766544
No 254
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=75.40 E-value=18 Score=31.72 Aligned_cols=73 Identities=16% Similarity=0.324 Sum_probs=53.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEEC--------CcchHHHHHHH---HHcCCcEeeechHHHHHHHHhcC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVG--------GVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMD 70 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~l---~~~~~~IlV~TP~~l~~~~~~~~ 70 (184)
++|++..|+-|.-+.+.+.+.+. +++ ..++| |.+-++|...+ .++.++|+|+|. +.. .
T Consensus 369 vIVFT~yRdTae~i~~~L~~~~~---~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTS------VgE-E 437 (542)
T COG1111 369 VIVFTEYRDTAEEIVNFLKKIGI---KAR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATS------VGE-E 437 (542)
T ss_pred EEEEehhHhHHHHHHHHHHhcCC---cce-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcc------ccc-c
Confidence 68899999999999888887643 444 34555 23334444333 346799999998 445 7
Q ss_pred CccCCCceEEEechh
Q 029993 71 VLDFRNLVILVLDEA 85 (184)
Q Consensus 71 ~~~~~~l~~lVvDEa 85 (184)
.+|.-.+.++|+=|+
T Consensus 438 GLDIp~vDlVifYEp 452 (542)
T COG1111 438 GLDIPEVDLVIFYEP 452 (542)
T ss_pred cCCCCcccEEEEecC
Confidence 899999999999887
No 255
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=75.28 E-value=11 Score=35.14 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=59.2
Q ss_pred EEEeccHHHHHHHHHHHHHh-----hhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHH------HHh---
Q 029993 3 MIISPTRELSAQIYHVAQPF-----ISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDI------MER--- 68 (184)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~------~~~--- 68 (184)
+|+|||.+.-.-++...... .+.+.+.+...+..+....... ...+++|.+++.|-.....- +.+
T Consensus 108 IivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~~-~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~ 186 (985)
T COG3587 108 IIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKFK-FKSNNKPCVLLIFVSAFNKEEINANMINSESM 186 (985)
T ss_pred EEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHHh-hccCCCceEEEEehhhhccccccccccchhhh
Confidence 78999987654433333322 2334345555554432221111 12246788888776554322 111
Q ss_pred --cC-------Ccc-CCCce-EEEechhhHhhccchHHHHHHHHHhCCCCceE-EEEeeeCchHHH
Q 029993 69 --MD-------VLD-FRNLV-ILVLDEADRLLDMGFQKQISYIISRLPKLRRT-GLFSATQTEAVE 122 (184)
Q Consensus 69 --~~-------~~~-~~~l~-~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~-i~~SAT~~~~v~ 122 (184)
.+ .++ +..++ ++|+||=|+|.+. ...... +..+ ++|. +=||||++++..
T Consensus 187 ~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~~~-i~~l--~pl~ilRfgATfkd~y~ 247 (985)
T COG3587 187 ENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTYGA-IKQL--NPLLILRFGATFKDEYN 247 (985)
T ss_pred cccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHHHH-HHhh--CceEEEEecccchhhhc
Confidence 01 011 33444 7799999998763 122222 2222 3454 449999998765
No 256
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=75.18 E-value=4.7 Score=33.34 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=30.2
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
..+++|+||||.|... -...+++++.....+..+++.+-
T Consensus 131 ~fKlvILDEADaMT~~-AQnALRRviek~t~n~rF~ii~n 169 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRD-AQNALRRVIEKYTANTRFATISN 169 (360)
T ss_pred ceeEEEecchhHhhHH-HHHHHHHHHHHhccceEEEEecc
Confidence 6899999999998654 57778888888877777765543
No 257
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=75.01 E-value=23 Score=29.86 Aligned_cols=115 Identities=13% Similarity=0.174 Sum_probs=56.9
Q ss_pred eccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchH--HHHH----HHHHc--CCcEeeechHHHHHHHHh---cCCc--
Q 029993 6 SPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVK--ADVK----KIEEE--GANLLIGTPGRLYDIMER---MDVL-- 72 (184)
Q Consensus 6 ~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~----~l~~~--~~~IlV~TP~~l~~~~~~---~~~~-- 72 (184)
-+...+|......+.+-. . .......++|+.-.+ .-.. .+... +..++..|...+...+.. .+..
T Consensus 115 g~~n~~a~~~~~~~~~~~-~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00362 115 GKSNRLAHAAALAVAENP-G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEE 192 (405)
T ss_pred CCcHHHHHHHHHHHHhCc-C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHH
Confidence 455566655544433311 1 123456778764322 1111 12222 466777777665433221 0111
Q ss_pred ---cCCCceEEEechhhHhhccc-hHHHHHHHHHhCC-CCceEEEEeeeCchHHH
Q 029993 73 ---DFRNLVILVLDEADRLLDMG-FQKQISYIISRLP-KLRRTGLFSATQTEAVE 122 (184)
Q Consensus 73 ---~~~~l~~lVvDEaD~l~~~~-~~~~l~~i~~~l~-~~~q~i~~SAT~~~~v~ 122 (184)
.+++..+|++||+|.+.+.. ....+..++..+. ...++++.|...|..+.
T Consensus 193 ~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 193 FKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred HHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 14567899999999876542 2344555554442 34566665444444443
No 258
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=74.80 E-value=18 Score=33.85 Aligned_cols=70 Identities=17% Similarity=0.126 Sum_probs=45.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH--------HHHHH-----------cCCcEeeechHH
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV--------KKIEE-----------EGANLLIGTPGR 61 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~l~~-----------~~~~IlV~TP~~ 61 (184)
++||+++|++-|..+++.+.+. ++ ..++|+....+.. ....+ ++..|+|+|-
T Consensus 274 ~vLVF~NTv~~Aq~L~~~L~~~-----g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATd-- 344 (844)
T TIGR02621 274 AILVFCRTVKHVRKVFAKLPKE-----KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTS-- 344 (844)
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccc--
Confidence 4799999999999999988764 23 6777776544333 11111 1267999994
Q ss_pred HHHHHHhcCCccCCCceEEEechh
Q 029993 62 LYDIMERMDVLDFRNLVILVLDEA 85 (184)
Q Consensus 62 l~~~~~~~~~~~~~~l~~lVvDEa 85 (184)
+ +. ..+|++. ..+|.|.+
T Consensus 345 V---ae--rGLDId~-d~VI~d~a 362 (844)
T TIGR02621 345 A---GE--VGVNISA-DHLVCDLA 362 (844)
T ss_pred h---hh--hcccCCc-ceEEECCC
Confidence 2 22 5677765 67776644
No 259
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=74.79 E-value=24 Score=30.38 Aligned_cols=94 Identities=16% Similarity=0.256 Sum_probs=48.4
Q ss_pred ceEEEEECCcchH--HHHHH----HHHc--CCcEeeechHHHHHHHHh-c--CCc-----cCCCceEEEechhhHhhccc
Q 029993 29 VKSMLLVGGVEVK--ADVKK----IEEE--GANLLIGTPGRLYDIMER-M--DVL-----DFRNLVILVLDEADRLLDMG 92 (184)
Q Consensus 29 ~~~~~~~~~~~~~--~~~~~----l~~~--~~~IlV~TP~~l~~~~~~-~--~~~-----~~~~l~~lVvDEaD~l~~~~ 92 (184)
.....++|+...+ .-... +... +..++..|...+..-+.. . +.. .++++..|++||+|.+.+..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCH
Confidence 3556778765322 11122 2122 456777677665433221 0 111 24567899999999875532
Q ss_pred -hHHHHHHHHHhCC-CCceEEEEeeeCchHHH
Q 029993 93 -FQKQISYIISRLP-KLRRTGLFSATQTEAVE 122 (184)
Q Consensus 93 -~~~~l~~i~~~l~-~~~q~i~~SAT~~~~v~ 122 (184)
....+..++..+- ...++++.|...|..+.
T Consensus 228 ~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 228 RTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 2344555554443 33566665544444433
No 260
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=74.32 E-value=26 Score=30.28 Aligned_cols=71 Identities=8% Similarity=0.026 Sum_probs=43.1
Q ss_pred CCcEeeechHHHHHHHHhc-----CCc-----cCCCceEEEechhhHhhcc-chHHHHHHHHHhCC-CCceEEEEeeeCc
Q 029993 51 GANLLIGTPGRLYDIMERM-----DVL-----DFRNLVILVLDEADRLLDM-GFQKQISYIISRLP-KLRRTGLFSATQT 118 (184)
Q Consensus 51 ~~~IlV~TP~~l~~~~~~~-----~~~-----~~~~l~~lVvDEaD~l~~~-~~~~~l~~i~~~l~-~~~q~i~~SAT~~ 118 (184)
+..++..|+..+...+... +.+ .++++.+|++||+|.+-.. ...+.+..+++.+. ...|+++.|-..|
T Consensus 171 ~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 171 DLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred CCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 5678888877766554320 111 1467889999999987532 24455666666553 3346766665555
Q ss_pred hHH
Q 029993 119 EAV 121 (184)
Q Consensus 119 ~~v 121 (184)
...
T Consensus 251 ~~l 253 (450)
T PRK14087 251 ELL 253 (450)
T ss_pred HHH
Confidence 444
No 261
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=73.90 E-value=14 Score=28.44 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=71.8
Q ss_pred EeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcc-hHHH-HHHH----HH--cCCcEeeechHHHHHHHHh---cCCc-
Q 029993 5 ISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVE-VKAD-VKKI----EE--EGANLLIGTPGRLYDIMER---MDVL- 72 (184)
Q Consensus 5 l~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~-~~~~-~~~l----~~--~~~~IlV~TP~~l~~~~~~---~~~~- 72 (184)
..++-++|....+.+..-.. . ......++|+.. .+.. ...+ .+ .+..|+-.+...+...+.. .+..
T Consensus 12 ~g~~N~~a~~~~~~ia~~~~-~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~ 89 (219)
T PF00308_consen 12 VGESNELAYAAAKAIAENPG-E-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIE 89 (219)
T ss_dssp -TTTTHHHHHHHHHHHHSTT-T-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHH
T ss_pred cCCcHHHHHHHHHHHHhcCC-C-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccch
Confidence 34566777766555544311 1 244567787653 2222 2221 11 3567888887776544321 0222
Q ss_pred ----cCCCceEEEechhhHhhcc-chHHHHHHHHHhCC-CCceEEEEeeeCchHHH----HHHHHhCCCCeEEEEccC
Q 029993 73 ----DFRNLVILVLDEADRLLDM-GFQKQISYIISRLP-KLRRTGLFSATQTEAVE----ELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 73 ----~~~~l~~lVvDEaD~l~~~-~~~~~l~~i~~~l~-~~~q~i~~SAT~~~~v~----~~~~~~~~~~~~i~~~~~ 140 (184)
.+.+..++++|+.|.+.+. ...+.+..+++.+. ...|+++.|...|.+.. ++.+++ ..-..+.+...
T Consensus 90 ~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl-~~Gl~~~l~~p 166 (219)
T PF00308_consen 90 EFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRL-SWGLVVELQPP 166 (219)
T ss_dssp HHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHH-HCSEEEEE---
T ss_pred hhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhH-hhcchhhcCCC
Confidence 2678999999999998654 24566666666664 34677777766665533 454543 33444555443
No 262
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=73.84 E-value=36 Score=25.67 Aligned_cols=98 Identities=12% Similarity=0.144 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhcCCCceEEEEECCc--chHHH----HHHHHHcCCcEeeechHHH-HHHHHhc---------------CC
Q 029993 14 QIYHVAQPFISTLPDVKSMLLVGGV--EVKAD----VKKIEEEGANLLIGTPGRL-YDIMERM---------------DV 71 (184)
Q Consensus 14 Qi~~~~~~l~~~~~~~~~~~~~~~~--~~~~~----~~~l~~~~~~IlV~TP~~l-~~~~~~~---------------~~ 71 (184)
.+.+.+..+... +-++..+.|.. -+..- ...+...+.+|++++|..- ..-+.+. ..
T Consensus 5 ~Q~~a~~~~l~~--~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~ 82 (196)
T PF13604_consen 5 EQREAVRAILTS--GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPN 82 (196)
T ss_dssp HHHHHHHHHHHC--TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECC
T ss_pred HHHHHHHHHHhc--CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCc
Confidence 445556666432 33455555532 22222 2233345788998888542 2212110 01
Q ss_pred c------cCCCceEEEechhhHhhccchHHHHHHHHHhCCC-CceEEEEeeeC
Q 029993 72 L------DFRNLVILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSATQ 117 (184)
Q Consensus 72 ~------~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~-~~q~i~~SAT~ 117 (184)
. .+.+...+|||||..+- ...+..+++..+. ..+++++.-.-
T Consensus 83 ~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 83 GDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp EECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-EEEEEE-TT
T ss_pred ccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCCEEEEECCcc
Confidence 0 14556799999998652 4556677777766 67888876653
No 263
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=73.38 E-value=13 Score=28.47 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=44.2
Q ss_pred CceEEEechhhHhhccch--HHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHh
Q 029993 76 NLVILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~--~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~ 128 (184)
+..++|+||.-..+..++ .+.+..+++.-|....+|+..-..|+++.+++...
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 577999999999988763 56777888888888889998888999988888764
No 264
>PRK08727 hypothetical protein; Validated
Probab=73.13 E-value=6.4 Score=30.65 Aligned_cols=109 Identities=9% Similarity=0.014 Sum_probs=55.8
Q ss_pred eEEEEECCcchH-HH-HH----HHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhcc-chHHHHHHHHH
Q 029993 30 KSMLLVGGVEVK-AD-VK----KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDM-GFQKQISYIIS 102 (184)
Q Consensus 30 ~~~~~~~~~~~~-~~-~~----~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~-~~~~~l~~i~~ 102 (184)
....++|+...+ .. .. .+.+.+..++..+...+...+.. ..-.+.+...+|+||+|.+... .....+-++++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~-~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n 120 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRD-ALEALEGRSLVALDGLESIAGQREDEVALFDFHN 120 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHH-HHHHHhcCCEEEEeCcccccCChHHHHHHHHHHH
Confidence 446777754322 11 11 22345666666665554443322 1112566779999999987643 23344555655
Q ss_pred hCCC-CceEEEEeeeCchHH----HHHHHHhCCCCeEEEEccC
Q 029993 103 RLPK-LRRTGLFSATQTEAV----EELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 103 ~l~~-~~q~i~~SAT~~~~v----~~~~~~~~~~~~~i~~~~~ 140 (184)
.... ..++++.|...|.+. .++.+.+. ....+.+..-
T Consensus 121 ~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~-~~~~~~l~~~ 162 (233)
T PRK08727 121 RARAAGITLLYTARQMPDGLALVLPDLRSRLA-QCIRIGLPVL 162 (233)
T ss_pred HHHHcCCeEEEECCCChhhhhhhhHHHHHHHh-cCceEEecCC
Confidence 5432 345666555555544 33444422 2345555544
No 265
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=73.13 E-value=5.9 Score=30.50 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=25.2
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
.++|+|||..+ -...++.++.++++++++++++-.
T Consensus 121 ~~iIvDEaQN~----t~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 121 AFIIVDEAQNL----TPEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp EEEEE-SGGG------HHHHHHHHTTB-TT-EEEEEE--
T ss_pred eEEEEecccCC----CHHHHHHHHcccCCCcEEEEecCc
Confidence 79999999876 477889999999999999998655
No 266
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=72.98 E-value=6.6 Score=34.07 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=52.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHh-cCCccCCCceEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER-MDVLDFRNLVIL 80 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~-~~~~~~~~l~~l 80 (184)
.++.+++++-|..+++.+..+....|.++...-. .... ...-.|..-..+.....+.. .+..+=.+..++
T Consensus 57 i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~~~-------~~~~--~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~ 127 (477)
T PF03354_consen 57 IYCAANTRDQAKIVFDEAKKMIEASPELRKRKKP-------KIIK--SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLA 127 (477)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhChhhccchhh-------hhhh--hhceEEEEcCCCcEEEEEecCCCCccCCCCceE
Confidence 5788999999999999999998776544421100 0000 00112222111222111111 122332346799
Q ss_pred EechhhHhhccchHHHHHHHHHhCC--CCceEEEEe
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFS 114 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~--~~~q~i~~S 114 (184)
|+||+|.+-+.. .+..+...+. ++++++..|
T Consensus 128 i~DE~h~~~~~~---~~~~l~~g~~~r~~pl~~~IS 160 (477)
T PF03354_consen 128 IFDELHAHKDDE---LYDALESGMGARPNPLIIIIS 160 (477)
T ss_pred EEeCCCCCCCHH---HHHHHHhhhccCCCceEEEEe
Confidence 999999875433 3333444343 345655553
No 267
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=72.23 E-value=6.5 Score=36.70 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=28.1
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
.+-+++||||+|.|-... .+.|..+++..+....+||.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 567899999999986554 445666677777666677654
No 268
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=72.16 E-value=7.1 Score=34.59 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=21.1
Q ss_pred EEEEeccHHHHHHHHHHHHHhhh
Q 029993 2 GMIISPTRELSAQIYHVAQPFIS 24 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~ 24 (184)
+||++|++-||.|.++.++.+.+
T Consensus 60 tLV~AhNKTLAaQLy~Efk~fFP 82 (663)
T COG0556 60 TLVLAHNKTLAAQLYSEFKEFFP 82 (663)
T ss_pred eEEEecchhHHHHHHHHHHHhCc
Confidence 68999999999999999999854
No 269
>PF13514 AAA_27: AAA domain
Probab=71.50 E-value=7.7 Score=37.40 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=47.0
Q ss_pred EEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEE
Q 029993 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIE 136 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~ 136 (184)
.||+|++=.-+|......+..++..+.+.+|+|+||+ .+++..+++..+.+.+.|.
T Consensus 1054 P~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTc--h~~l~~~a~~~~~~~v~v~ 1109 (1111)
T PF13514_consen 1054 PFILDDIFVNFDDERARAALELLAELSRRRQVIYFTC--HEHLVELAREVFGDRVNVH 1109 (1111)
T ss_pred cEEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEec--cHHHHHHHHHhcCCCCcee
Confidence 4899999777888888899999999999999999965 6778888888887777664
No 270
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=70.83 E-value=11 Score=35.88 Aligned_cols=72 Identities=18% Similarity=0.301 Sum_probs=48.4
Q ss_pred EEEEecc---HHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCcc-CCCc
Q 029993 2 GMIISPT---RELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD-FRNL 77 (184)
Q Consensus 2 alIl~Pt---reLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~-~~~l 77 (184)
.||.||+ +|.|..+.+.++.. ++++.....+. .+.......+..|++||....---+. +.+| ++.+
T Consensus 338 gLIfV~~d~G~e~aeel~e~Lr~~-----Gi~a~~~~a~~--~~~le~F~~GeidvLVGvAsyYG~lV---RGlDLP~ri 407 (1187)
T COG1110 338 GLIFVPIDYGREKAEELAEYLRSH-----GINAELIHAEK--EEALEDFEEGEVDVLVGVASYYGVLV---RGLDLPHRI 407 (1187)
T ss_pred eEEEEEcHHhHHHHHHHHHHHHhc-----CceEEEeeccc--hhhhhhhccCceeEEEEeccccccee---ecCCchhhe
Confidence 6899999 88888888877775 67888877655 33444444578999999875433332 2344 4566
Q ss_pred eEEEec
Q 029993 78 VILVLD 83 (184)
Q Consensus 78 ~~lVvD 83 (184)
++.|+=
T Consensus 408 rYaIF~ 413 (1187)
T COG1110 408 RYAVFY 413 (1187)
T ss_pred eEEEEe
Confidence 666653
No 271
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=70.43 E-value=3.9 Score=36.79 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=29.9
Q ss_pred cCCcEeeechHHHHHHHHhcCCcc--CCCceEEEechhhHhhc
Q 029993 50 EGANLLIGTPGRLYDIMERMDVLD--FRNLVILVLDEADRLLD 90 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~~~~~~--~~~l~~lVvDEaD~l~~ 90 (184)
..++++|+++..+..-... +... +-.-..+|+||||.+.+
T Consensus 193 ~~ad~vv~nh~~~~~~~~~-~~~~~~~p~~~v~v~DEAH~l~d 234 (654)
T COG1199 193 ENADLVVTNHALLLADVAL-EESRILLPENDVVVFDEAHNLPD 234 (654)
T ss_pred hhCCEEEEccHHHHhHHHh-hhhhccCCcccEEEEeccccchH
Confidence 4789999999998875544 2222 34567999999999866
No 272
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=70.04 E-value=5.5 Score=37.71 Aligned_cols=39 Identities=23% Similarity=0.162 Sum_probs=30.4
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
+.--|+|+||+|.-++......+.+.++ ..+.|+|+.|=
T Consensus 1072 ~PaPFfvlDEiDAALDntNi~kvasyIr--~~~~Q~IvISL 1110 (1141)
T KOG0018|consen 1072 KPAPFFVLDEIDAALDNTNIGKVASYIR--SSNFQFIVISL 1110 (1141)
T ss_pred CCCCceehhhHHHHhhhccHHHHHHHHh--cCCceEEEEec
Confidence 3445999999999999877777776666 55689999874
No 273
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=69.95 E-value=25 Score=32.04 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhh
Q 029993 2 GMIISPTRELSAQIYHVAQPFIS 24 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~ 24 (184)
.|||+|++.+|.|.++.++.+.+
T Consensus 57 ~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 57 TLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred EEEEECCHHHHHHHHHHHHHhCC
Confidence 58999999999999999999853
No 274
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.66 E-value=5.8 Score=36.06 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=26.4
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
.+-+++||||+|.|-...+.. +...++.-+..+.+|+.+.
T Consensus 123 gr~KViIIDEah~Ls~~AaNA-LLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNA-MLKTLEEPPEHVKFILATT 162 (700)
T ss_pred CCceEEEEEChHhcCHHHHHH-HHHhhccCCCCceEEEEeC
Confidence 457899999999886555443 3344555556666676653
No 275
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=69.42 E-value=29 Score=31.33 Aligned_cols=39 Identities=28% Similarity=0.364 Sum_probs=29.8
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
.-...++|+|||.. .+ ...+..+++.+++.+++|+++-.
T Consensus 263 ~l~~dvlIvDEaSM-vd---~~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 263 PLHLDVLVVDEASM-VD---LPMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred CCCCCeEEEChHhc-cc---HHHHHHHHHhcccCCEEEEecch
Confidence 34568999999974 33 56667788889999999987654
No 276
>PRK02362 ski2-like helicase; Provisional
Probab=69.42 E-value=27 Score=32.17 Aligned_cols=74 Identities=9% Similarity=0.132 Sum_probs=47.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcC--------------------C-----------CceEEEEECCcchHHHH---HH
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTL--------------------P-----------DVKSMLLVGGVEVKADV---KK 46 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~--------------------~-----------~~~~~~~~~~~~~~~~~---~~ 46 (184)
++||++|||.-|..+...+....... + ...+...++|.+..++. ..
T Consensus 245 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~ 324 (737)
T PRK02362 245 QCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDA 324 (737)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHH
Confidence 58999999998888877776543200 0 12466777776654332 22
Q ss_pred HHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 47 IEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 47 l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
..++..+|+|+|+. +. ..+|+....++|
T Consensus 325 Fr~G~i~VLvaT~t-la------~GvnlPa~~VVI 352 (737)
T PRK02362 325 FRDRLIKVISSTPT-LA------AGLNLPARRVII 352 (737)
T ss_pred HHcCCCeEEEechh-hh------hhcCCCceEEEE
Confidence 23567899999993 22 356666666665
No 277
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=69.34 E-value=10 Score=35.31 Aligned_cols=83 Identities=18% Similarity=0.275 Sum_probs=58.5
Q ss_pred EEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhcCCc-----cCCC
Q 029993 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMDVL-----DFRN 76 (184)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~~~~-----~~~~ 76 (184)
.+++..-=||..=..++.++-.++ ++++.....+....+.... -.|||.-||-..+ .++++.+-.. -.+.
T Consensus 125 hvVTvNdYLA~RDae~m~~l~~~L-GlsvG~~~~~m~~~ek~~a---Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~ 200 (822)
T COG0653 125 HVVTVNDYLARRDAEWMGPLYEFL-GLSVGVILAGMSPEEKRAA---YACDITYGTNNELGFDYLRDNMVTSQEEKVQRG 200 (822)
T ss_pred EEeeehHHhhhhCHHHHHHHHHHc-CCceeeccCCCChHHHHHH---HhcCceeccccccCcchhhhhhhccHHHhhhcc
Confidence 456666667777788888888888 8999998888865544333 4689999999886 2333221111 1457
Q ss_pred ceEEEechhhHhh
Q 029993 77 LVILVLDEADRLL 89 (184)
Q Consensus 77 l~~lVvDEaD~l~ 89 (184)
+.+-|+||+|.++
T Consensus 201 ~~faIvDEvDSIL 213 (822)
T COG0653 201 LNFAIVDEVDSIL 213 (822)
T ss_pred CCeEEEcchhhee
Confidence 8899999999975
No 278
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=68.93 E-value=10 Score=25.75 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=13.4
Q ss_pred ceEEEechhhHhhccc
Q 029993 77 LVILVLDEADRLLDMG 92 (184)
Q Consensus 77 l~~lVvDEaD~l~~~~ 92 (184)
-.++++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4799999999998654
No 279
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=68.92 E-value=62 Score=31.22 Aligned_cols=114 Identities=13% Similarity=0.170 Sum_probs=58.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcC---CCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCc---
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTL---PDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVL--- 72 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~--- 72 (184)
|||++|-.- +.-..+.|.++...+ ..+.|..+..-...+... ..+.+.|.=.||| -..+..+-.. +..
T Consensus 731 aLvV~PlNt-~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiG-YdmyRnLa~g-r~vk~r 807 (1567)
T KOG1015|consen 731 ALVVCPLNT-ALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIG-YDMYRNLAQG-RNVKSR 807 (1567)
T ss_pred EEEEcchHH-HHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEe-hHHHHHHhcc-cchhhh
Confidence 799999654 445556666665532 135555544433333332 3344444333444 2222221111 100
Q ss_pred ----------cCCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchH
Q 029993 73 ----------DFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (184)
Q Consensus 73 ----------~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~ 120 (184)
-=..-.++|.||+|.|=. -...+...+.++...+++++.+.-+-++
T Consensus 808 k~ke~f~k~lvdpGPD~vVCDE~HiLKN--eksa~Skam~~irtkRRI~LTGTPLQNN 863 (1567)
T KOG1015|consen 808 KLKEIFNKALVDPGPDFVVCDEGHILKN--EKSAVSKAMNSIRTKRRIILTGTPLQNN 863 (1567)
T ss_pred HHHHHHHHhccCCCCCeEEecchhhhcc--chHHHHHHHHHHHhheeEEeecCchhhh
Confidence 012346999999997643 2555666666666666666654445444
No 280
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=68.83 E-value=6.5 Score=36.42 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=25.1
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
.+-+++||||+|.|-...+.. +..+++.-+....+|+.+
T Consensus 118 gr~KVIIIDEah~LT~~A~NA-LLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNA-MLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHHHH-HHHHHHhcCCCeEEEEEE
Confidence 356899999999886554444 444566555555555543
No 281
>PRK10536 hypothetical protein; Provisional
Probab=68.64 E-value=7.4 Score=31.17 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=28.6
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
.++|+|||+.+- ...+..++.+++.++++++.+-
T Consensus 178 ~~vIvDEaqn~~----~~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 178 AVVILDEAQNVT----AAQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred CEEEEechhcCC----HHHHHHHHhhcCCCCEEEEeCC
Confidence 799999998762 5788899999999999888654
No 282
>PRK00254 ski2-like helicase; Provisional
Probab=68.32 E-value=30 Score=31.76 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=46.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhh----------------cC---C---------CceEEEEECCcchHHHH---HHHHH
Q 029993 1 MGMIISPTRELSAQIYHVAQPFIS----------------TL---P---------DVKSMLLVGGVEVKADV---KKIEE 49 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~----------------~~---~---------~~~~~~~~~~~~~~~~~---~~l~~ 49 (184)
++||++|||.-|..+...+.+... .. + ...+...++|.+.+++. ....+
T Consensus 240 ~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~ 319 (720)
T PRK00254 240 GALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFRE 319 (720)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHC
Confidence 579999999888766655533211 00 0 12367777887654443 22334
Q ss_pred cCCcEeeechHHHHHHHHhcCCccCCCceEEEec
Q 029993 50 EGANLLIGTPGRLYDIMERMDVLDFRNLVILVLD 83 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvD 83 (184)
+..+|+|||+. +. ..+|+.....+|.+
T Consensus 320 G~i~VLvaT~t-La------~Gvnipa~~vVI~~ 346 (720)
T PRK00254 320 GLIKVITATPT-LS------AGINLPAFRVIIRD 346 (720)
T ss_pred CCCeEEEeCcH-Hh------hhcCCCceEEEECC
Confidence 67899999993 22 35666666666643
No 283
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=67.46 E-value=9.3 Score=29.79 Aligned_cols=55 Identities=29% Similarity=0.361 Sum_probs=45.9
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHh
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~ 128 (184)
.++-+.+|+||.=.=++-.....+..++.++++.-..++||...=++++.++..+
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrv 203 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRV 203 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheE
Confidence 5677899999986655556778888889999888899999999999999888864
No 284
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.71 E-value=3.9 Score=37.35 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=27.9
Q ss_pred cCCcEeeechHHHHHHHHh-cCCccCCCceEEEechhhHhhc
Q 029993 50 EGANLLIGTPGRLYDIMER-MDVLDFRNLVILVLDEADRLLD 90 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~-~~~~~~~~l~~lVvDEaD~l~~ 90 (184)
..+||||+.-.-|.+--.. .-.+++++ .++|+||||.+.+
T Consensus 194 ~~advIi~pYnyl~dp~~r~~~~~~l~~-~ivI~DEAHNL~d 234 (705)
T TIGR00604 194 PFANIVLLPYQYLLDPKIRSAVSIELKD-SIVIFDEAHNLDN 234 (705)
T ss_pred hcCCEEEechHHhcCHHHHHHhhccccc-CEEEEECccchHH
Confidence 4589999999877543332 11234555 7899999999865
No 285
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=66.52 E-value=21 Score=28.66 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=28.9
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
..-+.+++||+|.+... ....+..+++..+..+.+++.+..
T Consensus 101 ~~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 101 APFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred CCceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEeCC
Confidence 35679999999988543 345667777777777777775533
No 286
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=66.13 E-value=15 Score=27.88 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhh
Q 029993 9 RELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEAD 86 (184)
Q Consensus 9 reLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD 86 (184)
.++|..+...+.+..+.- +.-+..+.||+....-...+ .+.. + ..++++++.++-+||--
T Consensus 3 ~~~a~~i~~~i~~~i~~~-~~~~i~LsgGstp~~~y~~L---------------~~~~-~-~~i~w~~v~~~~~DEr~ 62 (199)
T PF01182_consen 3 QAVAEAIAEAIEEAIAER-GRAVIALSGGSTPKPLYQEL---------------AKLH-K-ERIDWSRVHFFNVDERV 62 (199)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSEEEEE--SCTHHHHHHHH---------------HHHH-H-TCSCGGGEEEEESEEES
T ss_pred HHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHH---------------hhhc-c-ccCChhHeEEEeCcccc
Confidence 467777777777766554 34445556665543332222 1111 2 36899999999999985
No 287
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.75 E-value=7.1 Score=34.33 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=26.9
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
.+-+.+|+||+|.|-...+ +.+...++.-|..+.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 3568999999998865544 44555667666666666654
No 288
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=65.25 E-value=10 Score=28.22 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=25.2
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
...-+++|+||+|.|-... .+.+...++.-++..-+++.+
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 4667899999999986542 344445555544445555543
No 289
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=64.64 E-value=38 Score=26.59 Aligned_cols=88 Identities=15% Similarity=0.267 Sum_probs=46.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEE--EEECCcchHH----HHH----HHHHcCCcEeeechHHHHHHHHh---
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSM--LLVGGVEVKA----DVK----KIEEEGANLLIGTPGRLYDIMER--- 68 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~--~~~~~~~~~~----~~~----~l~~~~~~IlV~TP~~l~~~~~~--- 68 (184)
+-++|| +.|..|.++.+..-.+..-+-++. -+......+. ... ... ..-.|+++||+.++.+.-.
T Consensus 73 vrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~-~~~gill~~PEhilSf~L~~le 150 (229)
T PF12340_consen 73 VRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECM-RSGGILLATPEHILSFKLKGLE 150 (229)
T ss_pred EEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHH-HcCCEEEeChHHHHHHHHHHHH
Confidence 446666 558888888887654433232332 2333332211 111 121 3456999999988665421
Q ss_pred ---cCCcc-----------CCCceEEEechhhHhhcc
Q 029993 69 ---MDVLD-----------FRNLVILVLDEADRLLDM 91 (184)
Q Consensus 69 ---~~~~~-----------~~~l~~lVvDEaD~l~~~ 91 (184)
.+... +++-..-|+||+|..+..
T Consensus 151 ~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 151 RLQDGKPEEARELLKIQKWLDEHSRDILDESDEILSV 187 (229)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccCc
Confidence 01110 233344588888887753
No 290
>PRK10869 recombination and repair protein; Provisional
Probab=64.43 E-value=11 Score=33.51 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=32.4
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
+..++|+||.|.=++......+..+++.+.+.+|+++.|
T Consensus 452 ~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iT 490 (553)
T PRK10869 452 ETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVT 490 (553)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 568999999999998888888889999887777765543
No 291
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=64.27 E-value=7.4 Score=29.25 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=31.1
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCC-CceEEEEee
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSA 115 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~-~~q~i~~SA 115 (184)
.++++||.+.-+.......+..++..+.+ +.|+++.|-
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTH 297 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTH 297 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCc
Confidence 78999999998888777777788877765 789988653
No 292
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=63.53 E-value=36 Score=33.35 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=65.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCC-ceEEEEECCcch-HHHHHHHHHcCCcEeeechHHHHHHHHhc----------
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPD-VKSMLLVGGVEV-KADVKKIEEEGANLLIGTPGRLYDIMERM---------- 69 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~~l~~~~~~IlV~TP~~l~~~~~~~---------- 69 (184)
-|||+|.-- -.|.++.+.+ +.+. +++....|=... ...-..+ -.+|||++|-..|..=+.++
T Consensus 423 TLII~P~aI-l~QW~~EI~k---H~~~~lKv~~Y~Girk~~~~~~~el--~~yDIVlTtYdiLr~El~hte~~~~~R~lR 496 (1394)
T KOG0298|consen 423 TLIICPNAI-LMQWFEEIHK---HISSLLKVLLYFGIRKTFWLSPFEL--LQYDIVLTTYDILRNELYHTEDFGSDRQLR 496 (1394)
T ss_pred eEEECcHHH-HHHHHHHHHH---hccccceEEEEechhhhcccCchhh--hccCEEEeehHHHHhHhhcccccCChhhhh
Confidence 378999654 3455444444 4444 477666653221 1111223 36899999999887666442
Q ss_pred ---CCccCC----Cce--EEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHH
Q 029993 70 ---DVLDFR----NLV--ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEEL 124 (184)
Q Consensus 70 ---~~~~~~----~l~--~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~ 124 (184)
+..+++ .+. -+++|||.. +.. -.....+++..++. ...+..|+|.-..+..+
T Consensus 497 ~qsr~~~~~SPL~~v~wWRIclDEaQM-ves-ssS~~a~M~~rL~~-in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 497 HQSRYMRPNSPLLMVNWWRICLDEAQM-VES-SSSAAAEMVRRLHA-INRWCVTGTPIQKIDDL 557 (1394)
T ss_pred cccCCCCCCCchHHHHHHHHhhhHHHh-hcc-hHHHHHHHHHHhhh-hceeeecCCchhhhhhh
Confidence 122211 122 268999974 444 46667777777765 44567788865445443
No 293
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=63.14 E-value=21 Score=22.05 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=36.8
Q ss_pred CceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechh
Q 029993 28 DVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEA 85 (184)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEa 85 (184)
++++..++|+.+..+... ...+...+|+|+|-. . . ..+|+..+..+|+-+.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~--~----~-~Gid~~~~~~vi~~~~ 60 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDI--L----G-EGIDLPDASHVIFYDP 60 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCG--G----T-TSSTSTTESEEEESSS
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecc--c----c-cccccccccccccccc
Confidence 789999999876554433 333457899999952 1 1 5789989998887665
No 294
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=63.04 E-value=14 Score=25.10 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=19.7
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhC
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRL 104 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l 104 (184)
..+-..+++||+|.+.. .....+..++...
T Consensus 82 ~~~~~~lilDe~~~~~~-~~~~~~~~~i~~~ 111 (151)
T cd00009 82 KAKPGVLFIDEIDSLSR-GAQNALLRVLETL 111 (151)
T ss_pred cCCCeEEEEeChhhhhH-HHHHHHHHHHHhc
Confidence 45668999999998732 2344555555555
No 295
>PRK08181 transposase; Validated
Probab=62.30 E-value=40 Score=27.06 Aligned_cols=91 Identities=13% Similarity=0.086 Sum_probs=51.8
Q ss_pred HcCCcEeeechHHHHHHHHhc---CCc-----cCCCceEEEechhhHhhccc-hHHHHHHHHHhCCCCceEEEEeeeCch
Q 029993 49 EEGANLLIGTPGRLYDIMERM---DVL-----DFRNLVILVLDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQTE 119 (184)
Q Consensus 49 ~~~~~IlV~TP~~l~~~~~~~---~~~-----~~~~l~~lVvDEaD~l~~~~-~~~~l~~i~~~l~~~~q~i~~SAT~~~ 119 (184)
..+..++..|...|...+... +.. .+.++..+|+||.+...... ....+-.+++..-....+++.|..-+.
T Consensus 132 ~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~ 211 (269)
T PRK08181 132 ENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFG 211 (269)
T ss_pred HcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 457778877776776655431 111 15678899999998764432 234556666554334455555554444
Q ss_pred HHHH----------HHHHhCCCCeEEEEcc
Q 029993 120 AVEE----------LSKAGLRNPVRIEVRA 139 (184)
Q Consensus 120 ~v~~----------~~~~~~~~~~~i~~~~ 139 (184)
+... +.+..++....+.+.-
T Consensus 212 ~w~~~~~D~~~a~aildRL~h~~~~i~~~g 241 (269)
T PRK08181 212 EWNRVFPDPAMTLAAVDRLVHHATIFEMNV 241 (269)
T ss_pred HHHHhcCCccchhhHHHhhhcCceEEecCC
Confidence 4333 2345555666665543
No 296
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=62.03 E-value=41 Score=27.23 Aligned_cols=73 Identities=11% Similarity=0.240 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhcCCCceEEEEECCc----chHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhh
Q 029993 13 AQIYHVAQPFISTLPDVKSMLLVGGV----EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEAD 86 (184)
Q Consensus 13 ~Qi~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD 86 (184)
...++-+.++.+.++++.+...-... ......+.+.+.++++||++-..+.+.+.. -.-...+.+|+++|..-
T Consensus 19 ~~~~~G~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~~~~~~~~~-vA~~yPd~~F~~~d~~~ 95 (306)
T PF02608_consen 19 QSAYEGLKRAEKELDGIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGFEYSDALQE-VAKEYPDTKFIIIDGYI 95 (306)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESGGGHHHHHH-HHTC-TTSEEEEESS--
T ss_pred HHHHHHHHHHHHHcCCceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccHHHHHHHHH-HHHHCCCCEEEEEecCc
Confidence 34455566666655567776666544 455666677778999999998887777765 22234677888887543
No 297
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=61.85 E-value=36 Score=31.05 Aligned_cols=62 Identities=8% Similarity=0.086 Sum_probs=42.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHH-HcCCcEeeechHHHHHHHHhcCCccCC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE-EEGANLLIGTPGRLYDIMERMDVLDFR 75 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~IlV~TP~~l~~~~~~~~~~~~~ 75 (184)
+||++.|.+-+..+...+.+. ++.+..+.|+....+...... .....|+|+|- +.. ..+|+.
T Consensus 476 vLIft~t~~~se~L~~~L~~~-----gi~~~~Lhg~~~~rE~~ii~~ag~~g~VlVATd------mAg-RGtDI~ 538 (656)
T PRK12898 476 VLVGTRSVAASERLSALLREA-----GLPHQVLNAKQDAEEAAIVARAGQRGRITVATN------MAG-RGTDIK 538 (656)
T ss_pred EEEEeCcHHHHHHHHHHHHHC-----CCCEEEeeCCcHHHHHHHHHHcCCCCcEEEEcc------chh-cccCcC
Confidence 799999999999998888774 678888888754333221111 23468999996 222 566665
No 298
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=61.65 E-value=8.2 Score=34.27 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=38.0
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHh
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~ 128 (184)
....+|+||+|.=.+..-...+-..++.+...+|++..| --|.|-..+..+
T Consensus 453 ~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VT--HlPQVAa~ad~H 503 (557)
T COG0497 453 DTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVT--HLPQVAAMADTH 503 (557)
T ss_pred CCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEe--cHHHHHhhhcce
Confidence 456999999997665556777788899999999998874 345555555544
No 299
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.62 E-value=97 Score=26.05 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=76.7
Q ss_pred EEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCcc--CCCceEE
Q 029993 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLD--FRNLVIL 80 (184)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~--~~~l~~l 80 (184)
+.+.-|-.-|.|....+..-+ +.+.......+...+......+.++.+-+---+.....++.+-.+| .+++.-
T Consensus 7 vLllGtGpvaIQlAv~l~~h~----d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~- 81 (431)
T COG4408 7 VLLLGTGPVAIQLAVDLSAHG----DARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQ- 81 (431)
T ss_pred eeEeecCcHHHHHHHHHHhcc----CceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHH-
Confidence 456677778888887777643 4455555555555555555445667777766666666665422222 112211
Q ss_pred EechhhHhhccchHHHHHHHHHhCC-----CCceEEEEeeeCchH--HHHHHHHhCCCCeEEEEcc
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLP-----KLRRTGLFSATQTEA--VEELSKAGLRNPVRIEVRA 139 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~-----~~~q~i~~SAT~~~~--v~~~~~~~~~~~~~i~~~~ 139 (184)
+.||-+.+.-.--.+.....+++++ .-.-+++.|+|+... +..++.+.-+|...|+.+.
T Consensus 82 ~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~Ss 147 (431)
T COG4408 82 AVGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSS 147 (431)
T ss_pred hhchhheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccHHHHHHHhhhCCCceEEEeeh
Confidence 1233333321111233334455543 446789999999877 7788888888888887654
No 300
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.58 E-value=8.7 Score=36.86 Aligned_cols=52 Identities=21% Similarity=0.167 Sum_probs=42.3
Q ss_pred ceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCC
Q 029993 77 LVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLR 130 (184)
Q Consensus 77 l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~ 130 (184)
--+.|+||+|.-++.....-+.+-++...+++|+|+.| +-+.+-.++...++
T Consensus 1218 TPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIIS--LRnnMFELa~rLvG 1269 (1293)
T KOG0996|consen 1218 TPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIIS--LRNNMFELANRLVG 1269 (1293)
T ss_pred CCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEE--ehhhHHHHHhhhee
Confidence 34789999999999988899999888889999999987 44555666666554
No 301
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=61.30 E-value=1.1e+02 Score=26.43 Aligned_cols=118 Identities=12% Similarity=0.236 Sum_probs=59.9
Q ss_pred eccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchH--HHHH----HHHHc--CCcEeeechHHHHHHHHh-c--CCc-c
Q 029993 6 SPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVK--ADVK----KIEEE--GANLLIGTPGRLYDIMER-M--DVL-D 73 (184)
Q Consensus 6 ~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~----~l~~~--~~~IlV~TP~~l~~~~~~-~--~~~-~ 73 (184)
-|+.++|...... +...-.......++|+.-.+ .-.. .+... +..++..|...+..-+.. . +.. .
T Consensus 110 g~~n~~a~~~~~~---~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~ 186 (440)
T PRK14088 110 GPGNSFAYHAALE---VAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE 186 (440)
T ss_pred CCchHHHHHHHHH---HHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH
Confidence 4555666544333 32211123457788765422 1112 12121 457888787775543321 0 111 1
Q ss_pred ----C-CCceEEEechhhHhhccc-hHHHHHHHHHhCCC-CceEEEEeeeCchHHHHHHH
Q 029993 74 ----F-RNLVILVLDEADRLLDMG-FQKQISYIISRLPK-LRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 74 ----~-~~l~~lVvDEaD~l~~~~-~~~~l~~i~~~l~~-~~q~i~~SAT~~~~v~~~~~ 126 (184)
+ .+...+++||+|.+.+.. ....+..+++.+.. ..|+++.|..-|.++..+..
T Consensus 187 f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 187 FREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred HHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHH
Confidence 1 257899999999886542 23445555554432 35666655555555544433
No 302
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=61.03 E-value=17 Score=25.47 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=27.4
Q ss_pred CCCceEEEechhhHhhccch----------HHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 74 FRNLVILVLDEADRLLDMGF----------QKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~----------~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
-.+..++|+||++.+.+... ...+..+....++....+++....+
T Consensus 83 ~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 83 RGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 35677999999998865422 3555555555554444455444444
No 303
>PRK07413 hypothetical protein; Validated
Probab=61.01 E-value=19 Score=30.52 Aligned_cols=54 Identities=15% Similarity=0.235 Sum_probs=45.2
Q ss_pred CCceEEEechhhHhhccc--hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHh
Q 029993 75 RNLVILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~--~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~ 128 (184)
....++|+||+-..++.+ -.+.+..+++.-|...-+|+..-..|+++.+++...
T Consensus 124 g~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADlV 179 (382)
T PRK07413 124 GLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADLH 179 (382)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCee
Confidence 456799999999988876 357788888988988999999999999988877653
No 304
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=60.92 E-value=1.2e+02 Score=28.34 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=37.7
Q ss_pred cEeeechHHHHHHHHhcCCccCCCceEEEechhhHhh-ccc-hHHHHHHHHHhCCCCceEEEEeeeCch
Q 029993 53 NLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLL-DMG-FQKQISYIISRLPKLRRTGLFSATQTE 119 (184)
Q Consensus 53 ~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~-~~~-~~~~l~~i~~~l~~~~q~i~~SAT~~~ 119 (184)
-|=..|-|-|+.=.- +.-++.+-..+|+||||.=. ..+ ....++..+.. ..+-.+|..|||+..
T Consensus 447 ~IkymTDGiLLrEsL--~d~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliVtSATm~a 512 (1042)
T KOG0924|consen 447 KIKYMTDGILLRESL--KDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIVTSATMDA 512 (1042)
T ss_pred eEEEeccchHHHHHh--hhhhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEEeeccccH
Confidence 455677777665322 23357778899999999631 111 11122222222 346789999999984
No 305
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=60.83 E-value=30 Score=29.65 Aligned_cols=85 Identities=14% Similarity=0.245 Sum_probs=59.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHH---HHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||++-.+.-+..|++.+.- +++.++.++||.+-+..-.. ...++-||+|+|-- .. +.+||-+++
T Consensus 424 VLIFaEkK~DVD~IhEYLLl-----KGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDV------AS-KGLDFp~iq 491 (610)
T KOG0341|consen 424 VLIFAEKKADVDDIHEYLLL-----KGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDV------AS-KGLDFPDIQ 491 (610)
T ss_pred eEEEeccccChHHHHHHHHH-----ccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecc------hh-ccCCCccch
Confidence 57777777777777765532 37899999999875544332 33467899999972 33 788988888
Q ss_pred EEEechhhHhhccchHHHHHHHHHhCCC
Q 029993 79 ILVLDEADRLLDMGFQKQISYIISRLPK 106 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~~~l~~i~~~l~~ 106 (184)
.+| +.+..+++.+-+-++++
T Consensus 492 HVI--------NyDMP~eIENYVHRIGR 511 (610)
T KOG0341|consen 492 HVI--------NYDMPEEIENYVHRIGR 511 (610)
T ss_pred hhc--------cCCChHHHHHHHHHhcc
Confidence 664 44567777777777754
No 306
>PRK07413 hypothetical protein; Validated
Probab=60.81 E-value=15 Score=31.18 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=43.9
Q ss_pred CCceEEEechhhHhhccch--HHHHHHHHHhCCCCceEEEEeee-CchHHHHHHHHh
Q 029993 75 RNLVILVLDEADRLLDMGF--QKQISYIISRLPKLRRTGLFSAT-QTEAVEELSKAG 128 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~--~~~l~~i~~~l~~~~q~i~~SAT-~~~~v~~~~~~~ 128 (184)
....++|+||+-..++.++ .+.+..+++..|...-+|+..-. .|+++.+++...
T Consensus 304 g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~ADlV 360 (382)
T PRK07413 304 GLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLASVH 360 (382)
T ss_pred CCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhCchh
Confidence 4567999999999888774 45888899999988889998887 788888777653
No 307
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=60.76 E-value=26 Score=28.09 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=36.6
Q ss_pred CcEeeechHHHHH------HHHh---cCCcc--CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 52 ANLLIGTPGRLYD------IMER---MDVLD--FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 52 ~~IlV~TP~~l~~------~~~~---~~~~~--~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
++++.-+|..... .++. ..... ....+.+++||||.|... -...+...++.-+.++.+++.+.
T Consensus 74 ~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 74 PDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 6888777754322 1211 02222 367899999999998763 34445555555455555555543
No 308
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=60.71 E-value=61 Score=27.50 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=49.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHH---HHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+.|.|.|.--|+-+...++.+ ++++..+++-..-.+....+ .++...|+|||-- .. +.+|.-.++
T Consensus 257 imIFvnttr~cQ~l~~~l~~l-----e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDV------As-RGLDIP~V~ 324 (442)
T KOG0340|consen 257 IMIFVNTTRECQLLSMTLKNL-----EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDV------AS-RGLDIPTVE 324 (442)
T ss_pred EEEEeehhHHHHHHHHHHhhh-----ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEech------hh-cCCCCCcee
Confidence 456777766677777766666 78999999887766665544 3578999999972 23 678888888
Q ss_pred EEE
Q 029993 79 ILV 81 (184)
Q Consensus 79 ~lV 81 (184)
.+|
T Consensus 325 LVv 327 (442)
T KOG0340|consen 325 LVV 327 (442)
T ss_pred EEE
Confidence 886
No 309
>PRK13770 histidinol dehydrogenase; Provisional
Probab=60.67 E-value=22 Score=30.44 Aligned_cols=27 Identities=7% Similarity=0.075 Sum_probs=23.6
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLP 27 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~ 27 (184)
+++.++++++|+.++...+.+....+|
T Consensus 254 ~~iLvT~s~~la~~V~~ev~~ql~~lp 280 (416)
T PRK13770 254 RTYVISEDAQVLKDLESRIAKALPNVD 280 (416)
T ss_pred cEEEEeCCHHHHHHHHHHHHHHHHhCC
Confidence 578999999999999999998877664
No 310
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=60.43 E-value=52 Score=25.92 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=42.4
Q ss_pred HHHHHHhhhcCCCceEEEEECC---cchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEech
Q 029993 16 YHVAQPFISTLPDVKSMLLVGG---VEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDE 84 (184)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDE 84 (184)
++-+.+..+.. ++++...-.. ....+..+.+.+.++++||++...+.+.+.. -.-...+.+++++|-
T Consensus 20 ~~G~~~~~~~~-gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g~~~~~~~~~-vA~~~p~~~F~~~d~ 89 (258)
T cd06353 20 DEGRKAAEKAL-GVEVTYVENVPEGADAERVLRELAAQGYDLIFGTSFGFMDAALK-VAKEYPDVKFEHCSG 89 (258)
T ss_pred HHHHHHHHHhc-CCeEEEEecCCchHhHHHHHHHHHHcCCCEEEECchhhhHHHHH-HHHHCCCCEEEECCC
Confidence 44555555543 6766555544 2234455666678999999999888887665 222234777888764
No 311
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=60.32 E-value=11 Score=30.70 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=28.5
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
..-+.+|+||+|.+-. .....+..++...+..+++++.+.
T Consensus 124 ~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEEEeC
Confidence 4457999999998743 345667777777777777776544
No 312
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=60.04 E-value=38 Score=21.67 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=28.5
Q ss_pred EEEEeccHHHHHHHH-HHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH
Q 029993 2 GMIISPTRELSAQIY-HVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL 62 (184)
Q Consensus 2 alIl~PtreLa~Qi~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l 62 (184)
+|++|++.--..... ..+++.++.. ++.+....+....... ....+|+++.||.-=
T Consensus 2 IlvvC~~Gi~TS~~~~~~i~~~~~~~-gi~~~~~~~~~~~~~~----~~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 2 ILVVCGSGIGTSLMVANKIKKALKEL-GIEVEVSAGSILEVEE----IADDADLILLTPQIA 58 (90)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHHT-TECEEEEEEETTTHHH----HHTT-SEEEEEESSG
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhc-cCceEEEEeccccccc----ccCCCcEEEEcCccc
Confidence 467776553333333 4444444444 4555554444221111 135699999999544
No 313
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=59.82 E-value=38 Score=20.76 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=32.0
Q ss_pred EEEEeccH-HHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechH
Q 029993 2 GMIISPTR-ELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60 (184)
Q Consensus 2 alIl~Ptr-eLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~ 60 (184)
++++|++. ..+.-+...+++..+.. ++....-..+.. +. ....++|++++|+.
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~~~~-~~~~~~~~~~~~--~~---~~~~~~dliitt~~ 55 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAAKEL-GIEVKVEAQGLS--EV---IDLADADLIISTVP 55 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHHHHC-CCeEEEEEcccc--hh---hhcCCccEEEECCc
Confidence 67888888 56666777777766554 443332222222 10 12368899999994
No 314
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.60 E-value=1e+02 Score=26.54 Aligned_cols=132 Identities=11% Similarity=0.089 Sum_probs=73.3
Q ss_pred EEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH-HHHHHcCCcEeeechHHHHHHHHhcCCcc--CCCceE
Q 029993 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV-KKIEEEGANLLIGTPGRLYDIMERMDVLD--FRNLVI 79 (184)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~IlV~TP~~l~~~~~~~~~~~--~~~l~~ 79 (184)
+.|+-|-.-|.|.+..+++-+. -++......+...+.. ..+.+.+.-+-+++-.-....+...-.++ +++.+-
T Consensus 4 VLI~GtGPvAiQLAv~lk~~~~----~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~ 79 (429)
T PF10100_consen 4 VLIVGTGPVAIQLAVILKKHGN----CRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEE 79 (429)
T ss_pred eEEEcCCHHHHHHHHHHHhccC----ceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHH
Confidence 4577888889999988887542 3455444444333333 44544355566665554444443211111 111111
Q ss_pred EEechhhHhhccchHHHHHHHHHhCC-----CCceEEEEeeeCchH--HHHHHHHhCCCCeEEEEcc
Q 029993 80 LVLDEADRLLDMGFQKQISYIISRLP-----KLRRTGLFSATQTEA--VEELSKAGLRNPVRIEVRA 139 (184)
Q Consensus 80 lVvDEaD~l~~~~~~~~l~~i~~~l~-----~~~q~i~~SAT~~~~--v~~~~~~~~~~~~~i~~~~ 139 (184)
|.+|=|.+.----.+....++++++ +-.++|+.|.|+... |+.+.+....++..|+.+.
T Consensus 80 -i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFSt 145 (429)
T PF10100_consen 80 -IEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFST 145 (429)
T ss_pred -hcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeec
Confidence 1223333221112445555666665 346899999999877 5667777667888887654
No 315
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=59.48 E-value=92 Score=26.72 Aligned_cols=134 Identities=14% Similarity=0.252 Sum_probs=78.5
Q ss_pred EEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchH-HH-HHH----HHHcC--CcEeeechHHHHH-HHHhc--CC
Q 029993 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVK-AD-VKK----IEEEG--ANLLIGTPGRLYD-IMERM--DV 71 (184)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~-~~-~~~----l~~~~--~~IlV~TP~~l~~-~~~~~--~~ 71 (184)
.|+.|+-.+|......+.+-.+. ......++||...+ .. ... ....+ +.++-.|...+.. ++... +.
T Consensus 89 Fv~g~~N~~A~aa~~~va~~~g~--~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~ 166 (408)
T COG0593 89 FVVGPSNRLAYAAAKAVAENPGG--AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNE 166 (408)
T ss_pred eeeCCchHHHHHHHHHHHhccCC--cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhh
Confidence 36778888888777766664322 24567777765422 22 111 11223 4677777766532 22110 11
Q ss_pred c-----cCCCceEEEechhhHhhcc-chHHHHHHHHHhCCCC-ceEEEEeeeCchHHH----HHHHHhCCCCeEEEEccC
Q 029993 72 L-----DFRNLVILVLDEADRLLDM-GFQKQISYIISRLPKL-RRTGLFSATQTEAVE----ELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 72 ~-----~~~~l~~lVvDEaD~l~~~-~~~~~l~~i~~~l~~~-~q~i~~SAT~~~~v~----~~~~~~~~~~~~i~~~~~ 140 (184)
. .. ++..+++|+++.+-+. ...+.+-++++.+... .|+++.|...|.++. ++.++ +.....+.+...
T Consensus 167 ~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR-~~~Gl~~~I~~P 244 (408)
T COG0593 167 MEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSR-LEWGLVVEIEPP 244 (408)
T ss_pred HHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHH-HhceeEEeeCCC
Confidence 1 13 7999999999987654 4567777777777543 488888888887755 33333 233355555544
No 316
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=59.33 E-value=13 Score=31.11 Aligned_cols=40 Identities=23% Similarity=0.195 Sum_probs=27.6
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
..-+.+||||||.|-... .+.+...++.-+...-++++|.
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISH 179 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEEC
Confidence 467899999999985543 4445666666666666666653
No 317
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=59.13 E-value=10 Score=33.70 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=32.9
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
+.+++|+||.+.-++......+..++..+.+.+|+++.|--
T Consensus 462 ~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~ 502 (563)
T TIGR00634 462 AVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHL 502 (563)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 46899999999988888888888888888777777775433
No 318
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.07 E-value=16 Score=30.45 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=25.0
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
.+-+++|+||+|.|-...+. .+...++.-+....+++.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEEc
Confidence 45689999999998654333 3444455555556666654
No 319
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=58.92 E-value=51 Score=30.00 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=20.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhh
Q 029993 2 GMIISPTRELSAQIYHVAQPFIS 24 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~ 24 (184)
+|||+|+.+.|.|+++.+..+.+
T Consensus 60 vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 60 TLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred EEEEECCHHHHHHHHHHHHHhcC
Confidence 68999999999999999988753
No 320
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=58.69 E-value=44 Score=28.62 Aligned_cols=84 Identities=12% Similarity=0.199 Sum_probs=57.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHH---HHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
.+|++.|..-+..+.-.++.+ ++...-+.|..+.......+ .++.++|+|||- +.. +.+|..++.
T Consensus 303 ~iVF~~t~~tt~~la~~L~~l-----g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TD------VaS-RGLDip~Vd 370 (476)
T KOG0330|consen 303 VIVFCNTCNTTRFLALLLRNL-----GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTD------VAS-RGLDIPHVD 370 (476)
T ss_pred EEEEEeccchHHHHHHHHHhc-----CcceecccchhhHHHHHHHHHHHhccCCcEEEecc------hhc-ccCCCCCce
Confidence 478888888888887777776 67788888887655544332 346799999997 233 788888888
Q ss_pred EEEechhhHhhccchHHHHHHHHHhCC
Q 029993 79 ILVLDEADRLLDMGFQKQISYIISRLP 105 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~~~l~~i~~~l~ 105 (184)
++| ..++..+.+.-+-+.+
T Consensus 371 ~VV--------NyDiP~~skDYIHRvG 389 (476)
T KOG0330|consen 371 VVV--------NYDIPTHSKDYIHRVG 389 (476)
T ss_pred EEE--------ecCCCCcHHHHHHHcc
Confidence 776 3334444444444444
No 321
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=58.51 E-value=6.1 Score=29.06 Aligned_cols=76 Identities=11% Similarity=0.231 Sum_probs=43.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechH-HHHHHHHhcCCccCC--Cce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG-RLYDIMERMDVLDFR--NLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~-~l~~~~~~~~~~~~~--~l~ 78 (184)
+||+.||.+....+.+.+....... ++.+.. -++.+.........+....|++|+.+ .+. ..+|+. .++
T Consensus 12 ~lv~f~Sy~~l~~~~~~~~~~~~~~-~~~v~~-q~~~~~~~~l~~~~~~~~~il~~v~~g~~~------EGiD~~~~~~r 83 (167)
T PF13307_consen 12 VLVFFPSYRRLEKVYERLKERLEEK-GIPVFV-QGSKSRDELLEEFKRGEGAILLAVAGGSFS------EGIDFPGDLLR 83 (167)
T ss_dssp EEEEESSHHHHHHHHTT-TSS-E-E-TSCEEE-STCCHHHHHHHHHCCSSSEEEEEETTSCCG------SSS--ECESEE
T ss_pred EEEEeCCHHHHHHHHHHHHhhcccc-cceeee-cCcchHHHHHHHHHhccCeEEEEEecccEE------EeecCCCchhh
Confidence 6899999999999988776653211 233222 14444455555554556678888863 222 345554 578
Q ss_pred EEEechh
Q 029993 79 ILVLDEA 85 (184)
Q Consensus 79 ~lVvDEa 85 (184)
.+|++-.
T Consensus 84 ~vii~gl 90 (167)
T PF13307_consen 84 AVIIVGL 90 (167)
T ss_dssp EEEEES-
T ss_pred eeeecCC
Confidence 8887765
No 322
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=58.09 E-value=30 Score=30.22 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=30.3
Q ss_pred cCCCceE-EEechhhHhhcc---chHHHHHHHHHhCCCC-ceEEEEeee
Q 029993 73 DFRNLVI-LVLDEADRLLDM---GFQKQISYIISRLPKL-RRTGLFSAT 116 (184)
Q Consensus 73 ~~~~l~~-lVvDEaD~l~~~---~~~~~l~~i~~~l~~~-~q~i~~SAT 116 (184)
|+++-++ |.+||||.+|+. .+.+.+..+++.++++ .=+.++|-+
T Consensus 251 D~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~ 299 (502)
T PF05872_consen 251 DLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQN 299 (502)
T ss_pred CCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCC
Confidence 5777776 469999999975 3777777777777543 334444443
No 323
>PRK14873 primosome assembly protein PriA; Provisional
Probab=57.39 E-value=60 Score=29.68 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=39.2
Q ss_pred HHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhcc
Q 029993 15 IYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDM 91 (184)
Q Consensus 15 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~ 91 (184)
+.+..+.+.+.+|+.++....++. ....+ ...++|+|||++.. -++. .++..+++=+||.++..
T Consensus 440 ter~eeeL~~~FP~~~V~r~d~d~----~l~~~-~~~~~IlVGTqgae-pm~~-------g~~~lV~ildaD~~L~~ 503 (665)
T PRK14873 440 ARRTAEELGRAFPGVPVVTSGGDQ----VVDTV-DAGPALVVATPGAE-PRVE-------GGYGAALLLDAWALLGR 503 (665)
T ss_pred HHHHHHHHHHHCCCCCEEEEChHH----HHHhh-ccCCCEEEECCCCc-cccc-------CCceEEEEEcchhhhcC
Confidence 344455555567788877644432 23333 45899999999520 0111 24678888889988764
No 324
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=56.92 E-value=30 Score=29.73 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=23.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLP 27 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~ 27 (184)
+++.++++++|+.++.+.+.+.....|
T Consensus 264 ~aiLvT~s~~la~~V~~~v~~ql~~l~ 290 (425)
T PRK00877 264 QSILVTTSEELAEAVAAEVERQLATLP 290 (425)
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCC
Confidence 578999999999999999998876653
No 325
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=56.90 E-value=12 Score=35.75 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=36.3
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~ 117 (184)
....++++||.|.-++......+..++..+...+|+|++|.-.
T Consensus 1095 ~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~ 1137 (1164)
T TIGR02169 1095 KPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRS 1137 (1164)
T ss_pred CCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcH
Confidence 4568999999999999888888888898888889988876553
No 326
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=56.78 E-value=11 Score=34.64 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=34.1
Q ss_pred Eee-echHHHHHHHHhcCCccCCCceEEEechhhHhhccchHHHHHHHHHhC
Q 029993 54 LLI-GTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRL 104 (184)
Q Consensus 54 IlV-~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l 104 (184)
--| +=||++.+.++..+..++ .+.+||+|.|-..-.++--..+++-+
T Consensus 398 TYIGamPGrIiQ~mkka~~~NP----v~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNP----VFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred cccccCChHHHHHHHHhCCcCC----eEEeechhhccCCCCCChHHHHHhhc
Confidence 344 459999999998777676 89999999997654444444555555
No 327
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=56.69 E-value=12 Score=27.85 Aligned_cols=41 Identities=24% Similarity=0.295 Sum_probs=30.7
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCC-ceEEEEee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSA 115 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~-~q~i~~SA 115 (184)
.+-+++++||.+.-++......+...+..+.+. +++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 456899999999999887777777777766443 66666654
No 328
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=56.69 E-value=33 Score=29.19 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=23.6
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLP 27 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~ 27 (184)
+++.++++.+|+.++.+.+.+....+|
T Consensus 233 ~~iLvT~s~~la~~V~~~v~~ql~~l~ 259 (393)
T TIGR00069 233 QAILVTTSEELAEAVQEEIERQLATLP 259 (393)
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCC
Confidence 578999999999999999999877653
No 329
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=56.69 E-value=58 Score=29.51 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=43.2
Q ss_pred CCcEeeechHHHHHHHHh---cCCc-----cCCCceEEEechhhHhhccc-hHHHHHHHHHhCCC-CceEEEEeeeCchH
Q 029993 51 GANLLIGTPGRLYDIMER---MDVL-----DFRNLVILVLDEADRLLDMG-FQKQISYIISRLPK-LRRTGLFSATQTEA 120 (184)
Q Consensus 51 ~~~IlV~TP~~l~~~~~~---~~~~-----~~~~l~~lVvDEaD~l~~~~-~~~~l~~i~~~l~~-~~q~i~~SAT~~~~ 120 (184)
+..++..|...+...+.. .+.. .+.++.+|+|||+|.+.... ....+.++++.+.. ..|+|+.|-..+.+
T Consensus 344 g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 344 GTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred CCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 567777777665533321 0111 14678899999999886543 34556666666644 46777766555554
Q ss_pred H
Q 029993 121 V 121 (184)
Q Consensus 121 v 121 (184)
+
T Consensus 424 L 424 (617)
T PRK14086 424 L 424 (617)
T ss_pred h
Confidence 3
No 330
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=56.57 E-value=14 Score=31.24 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=28.1
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
.|+|+|||..| -...++.|+.+.++...+++.+
T Consensus 353 ~FiIIDEaQNL----TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 353 SFIIIDEAQNL----TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ceEEEehhhcc----CHHHHHHHHHhccCCCEEEEcC
Confidence 58999999887 4778999999999998888864
No 331
>PF12846 AAA_10: AAA-like domain
Probab=56.31 E-value=19 Score=28.27 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=22.7
Q ss_pred CCceEEEechhhHhhcc-chHHHHHHHHHhCCC
Q 029993 75 RNLVILVLDEADRLLDM-GFQKQISYIISRLPK 106 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~-~~~~~l~~i~~~l~~ 106 (184)
..-.++++||||.++.. .....+..+++..++
T Consensus 219 ~~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~Rk 251 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLSNPSGAEFLDELLREGRK 251 (304)
T ss_pred CceEEEEeCCccccccccchhhhhhHHHHHHHh
Confidence 34457899999999876 455566667766654
No 332
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=56.13 E-value=42 Score=26.16 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=32.0
Q ss_pred chHHHHHHHHhcCCccCCCceEEEechhhHhhcc----chHHHHH-HHHHhCC-CCceEEEEe
Q 029993 58 TPGRLYDIMERMDVLDFRNLVILVLDEADRLLDM----GFQKQIS-YIISRLP-KLRRTGLFS 114 (184)
Q Consensus 58 TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~----~~~~~l~-~i~~~l~-~~~q~i~~S 114 (184)
||..+++.+.+ ..++++++.++-+||-- ... .+...++ .+++.++ +..++..+.
T Consensus 39 tp~~~y~~L~~-~~i~w~~v~~f~~DER~--Vp~~~~~SN~~~~~~~Ll~~~~i~~~~i~~~~ 98 (233)
T TIGR01198 39 SPIALLEALAA-QPLDWSRIHLFLGDERY--VPLDHADSNTGLAREALLDRVAIPASNIHPMP 98 (233)
T ss_pred cHHHHHHHHhh-CCCCcceEEEEEecccc--cCCCCccchHHHHHHHHhccCCCChhheeeCC
Confidence 45566666665 47899999999999953 321 2233333 4556654 234454444
No 333
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=55.58 E-value=37 Score=29.17 Aligned_cols=72 Identities=15% Similarity=0.313 Sum_probs=42.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCC----------ceEEEEECCcchHHH-HHHHHHcCCcEeeechHHHHHHHHhc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPD----------VKSMLLVGGVEVKAD-VKKIEEEGANLLIGTPGRLYDIMERM 69 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~-~~~l~~~~~~IlV~TP~~l~~~~~~~ 69 (184)
+++.++|+.+|+.++...+.+....+|. .....++.+.+..-+ .+....+.-.|.+-.|..++..+++.
T Consensus 260 ~aiLvT~s~~la~~v~~~v~~~l~~l~~~ei~~~~l~~~g~iilv~~l~ea~~~~N~~APEHLei~~~~p~~~l~~I~nA 339 (425)
T COG0141 260 QAILVTDSEELAEAVEAAVERQLETLPRAEIARKALENYGAIILVDDLDEAVEISNEYAPEHLELQTENPRELLGKIRNA 339 (425)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHhCCeEEEECCHHHHHHHHHhhChHhhhhhhcCHHHHHHHhccc
Confidence 5899999999999999999988876642 223334443332222 22221222334455567777776664
Q ss_pred CCc
Q 029993 70 DVL 72 (184)
Q Consensus 70 ~~~ 72 (184)
+.+
T Consensus 340 GsI 342 (425)
T COG0141 340 GSI 342 (425)
T ss_pred cee
Confidence 443
No 334
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=55.26 E-value=18 Score=32.43 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=29.2
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
..+.++|+|||-. ++ ...+..+++.++..+++|+++-.
T Consensus 258 l~~dvlIiDEaSM-vd---~~l~~~ll~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 258 LPLDVLVVDEASM-VD---LPLMAKLLKALPPNTKLILLGDK 295 (586)
T ss_pred CcccEEEEccccc-CC---HHHHHHHHHhcCCCCEEEEECCh
Confidence 3568999999974 43 44677788889999999987655
No 335
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=54.94 E-value=14 Score=32.79 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=28.7
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
...-+.+|+||||.|-... ...+...++.-|+.+.+++++
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4567899999999886543 445566666667777777765
No 336
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=54.80 E-value=54 Score=27.80 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=48.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchH---HHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVK---ADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
|++|++.|++-+.++...+... +.++...+|..... ...+....+...++|.|- .+ . +.+++.++
T Consensus 265 q~~if~nt~r~v~~l~~~L~~~-----~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttd-l~-----a-rgidv~~~ 332 (397)
T KOG0327|consen 265 QAVIFCNTRRKVDNLTDKLRAH-----GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTD-LL-----A-RGIDVQQV 332 (397)
T ss_pred cceEEecchhhHHHHHHHHhhC-----CceEEEeecccchhhhhHHHHHhhcCCceEEeecc-cc-----c-cccchhhc
Confidence 6899999999999888877442 67888888876532 223444456778888885 11 1 56777777
Q ss_pred eEEE
Q 029993 78 VILV 81 (184)
Q Consensus 78 ~~lV 81 (184)
..+|
T Consensus 333 slvi 336 (397)
T KOG0327|consen 333 SLVV 336 (397)
T ss_pred ceee
Confidence 7665
No 337
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=54.42 E-value=55 Score=30.61 Aligned_cols=54 Identities=15% Similarity=0.047 Sum_probs=37.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHH-HcCCcEeeech
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIE-EEGANLLIGTP 59 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~IlV~TP 59 (184)
.+||++.|.+-+..+...+.+. ++.+..+.|+....+...... .....|+|+|-
T Consensus 430 pvLIf~~t~~~se~l~~~L~~~-----gi~~~~L~~~~~~~e~~~i~~ag~~g~VlIATd 484 (790)
T PRK09200 430 PVLIGTGSIEQSETFSKLLDEA-----GIPHNLLNAKNAAKEAQIIAEAGQKGAVTVATN 484 (790)
T ss_pred CEEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCccHHHHHHHHHcCCCCeEEEEcc
Confidence 3799999999999888877764 678888888755333322221 12458888885
No 338
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=54.33 E-value=54 Score=22.53 Aligned_cols=75 Identities=7% Similarity=0.032 Sum_probs=48.3
Q ss_pred cEeeechHHHHHHHHhcCCc---cCCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhC
Q 029993 53 NLLIGTPGRLYDIMERMDVL---DFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (184)
Q Consensus 53 ~IlV~TP~~l~~~~~~~~~~---~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~ 129 (184)
+|+|+|.|.+.+-+.++-.. ...+++.+=+.+-+.. ..+.+.+..++..++...++++++-=+.......+..++
T Consensus 3 ~ili~sHG~~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~--~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~~~~ 80 (116)
T TIGR00824 3 AIIISGHGQAAIALLKSAEMIFGEQNNVGAVPFVPGENA--ETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAARII 80 (116)
T ss_pred EEEEEecHHHHHHHHHHHHHHcCCcCCeEEEEcCCCcCH--HHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 58999999988777652111 1345555543322111 237888888999998888999887776666565555554
No 339
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=54.09 E-value=52 Score=29.30 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=50.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHH---HHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI---EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
++|++-|+.-|...+- +-.| + ++++.-++|...-.+....+ .+..++++|+|-- .. +.+|...++
T Consensus 429 ~ivFv~tKk~AHRl~I-llGL---l-gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDv------As-RGLDI~gV~ 496 (691)
T KOG0338|consen 429 TIVFVRTKKQAHRLRI-LLGL---L-GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDV------AS-RGLDIEGVQ 496 (691)
T ss_pred eEEEEehHHHHHHHHH-HHHH---h-hchhhhhcccccHHHHHHHHHHHHhccCCEEEEech------hh-ccCCcccee
Confidence 5778888887776543 3333 3 78899999988776665544 3468999999972 33 788989998
Q ss_pred EEEech
Q 029993 79 ILVLDE 84 (184)
Q Consensus 79 ~lVvDE 84 (184)
.+|=-+
T Consensus 497 tVINy~ 502 (691)
T KOG0338|consen 497 TVINYA 502 (691)
T ss_pred EEEecc
Confidence 887433
No 340
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=54.05 E-value=25 Score=26.33 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=24.8
Q ss_pred eEEEechhhHhh-c----cchHHHHHHHHHhCCC-CceEEEEeeeC
Q 029993 78 VILVLDEADRLL-D----MGFQKQISYIISRLPK-LRRTGLFSATQ 117 (184)
Q Consensus 78 ~~lVvDEaD~l~-~----~~~~~~l~~i~~~l~~-~~q~i~~SAT~ 117 (184)
-.+|+||+|.+. . .++...+..++..... ....++++++-
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 688999999998 2 2466777777777433 23344445544
No 341
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=53.75 E-value=44 Score=25.72 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHh
Q 029993 9 RELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRL 88 (184)
Q Consensus 9 reLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l 88 (184)
.++|..+...++.-...- +.-...+.||+ ||..+++.+.+...++++++.++-+||--
T Consensus 5 ~~~a~~i~~~i~~~i~~~-~~~~l~lsGGs-------------------tp~~~y~~L~~~~~i~w~~v~~f~~DEr~-- 62 (219)
T cd01400 5 EALADRIAEALAAAIAKR-GRFSLALSGGS-------------------TPKPLYELLAAAPALDWSKVHVFLGDERC-- 62 (219)
T ss_pred HHHHHHHHHHHHHHHHhc-CeEEEEECCCc-------------------cHHHHHHHhccccCCCCceEEEEEeeccc--
Confidence 345666666666544332 22334445544 44445555544124889999999999953
Q ss_pred hc----cchHHHHH-HHHHhCCCC-ceEEEEe
Q 029993 89 LD----MGFQKQIS-YIISRLPKL-RRTGLFS 114 (184)
Q Consensus 89 ~~----~~~~~~l~-~i~~~l~~~-~q~i~~S 114 (184)
.. ..+...++ .+++.++.. .++..+-
T Consensus 63 Vp~~~~~Sn~~~~~~~ll~~~~~~~~~v~~~~ 94 (219)
T cd01400 63 VPPDDPDSNYRLAREALLSHVAIPAANIHPIP 94 (219)
T ss_pred cCCCCcccHHHHHHHHhhccCCCCHhhEEeCC
Confidence 32 12344444 345555432 2444443
No 342
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=53.50 E-value=30 Score=29.47 Aligned_cols=27 Identities=15% Similarity=0.402 Sum_probs=23.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLP 27 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~ 27 (184)
+++.++++.+|+.++.+.+.+....+|
T Consensus 237 ~aiLvT~s~~la~~V~~~v~~ql~~l~ 263 (390)
T cd06572 237 QAILVTTSEELAEAVEEEVERQLAELP 263 (390)
T ss_pred eEEEEECCHHHHHHHHHHHHHHHHhCC
Confidence 578999999999999999998877654
No 343
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=53.46 E-value=30 Score=29.84 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=38.9
Q ss_pred CceEEEechhhHhhccc--------hHHHHHHHHHhC----CCCceEEEEeee-CchHHHHHHHHhCCCCeEEEEcc
Q 029993 76 NLVILVLDEADRLLDMG--------FQKQISYIISRL----PKLRRTGLFSAT-QTEAVEELSKAGLRNPVRIEVRA 139 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~--------~~~~l~~i~~~l----~~~~q~i~~SAT-~~~~v~~~~~~~~~~~~~i~~~~ 139 (184)
.-.++.+||+|.++... .....+.++... ..+-++++++|| .|.++.+-+...+....+|-..+
T Consensus 245 qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd 321 (428)
T KOG0740|consen 245 QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPD 321 (428)
T ss_pred CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCC
Confidence 34577799999998631 122222233222 344588888999 67777776666666666654443
No 344
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.35 E-value=25 Score=32.23 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=25.8
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
.+-+.+|+||+|.|-... ...+..+++.-+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 356899999999775544 445555666666556566543
No 345
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=52.98 E-value=65 Score=28.15 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=52.5
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHH---HHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
+|+|++-|+.-|....+.+.+-+++ ..+++++.|+....+.... ..+.....+|||-- .. +.++...+
T Consensus 507 kaiifcrtk~dcDnLer~~~qkgg~--~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdv------aa-rgldi~g~ 577 (725)
T KOG0349|consen 507 KAIIFCRTKQDCDNLERMMNQKGGK--HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDV------AA-RGLDITGL 577 (725)
T ss_pred ceEEEEeccccchHHHHHHHHcCCc--cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehh------hh-ccccccCC
Confidence 5899999999999999999887653 5788888988754444333 33456788999973 22 66777777
Q ss_pred eEEE
Q 029993 78 VILV 81 (184)
Q Consensus 78 ~~lV 81 (184)
-+.|
T Consensus 578 p~~i 581 (725)
T KOG0349|consen 578 PFMI 581 (725)
T ss_pred ceEE
Confidence 7664
No 346
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=52.97 E-value=38 Score=30.23 Aligned_cols=110 Identities=23% Similarity=0.197 Sum_probs=55.7
Q ss_pred EEEEeccHHHHHHHH-HHHHHhhhcCCCceEEEEE---CCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 2 GMIISPTRELSAQIY-HVAQPFISTLPDVKSMLLV---GGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 2 alIl~PtreLa~Qi~-~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.|++.||.++|.... ..+..+....|.++-.+-- .+......... +.++.-.++|.+. ...+.-..+
T Consensus 65 ~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~-f~gg~l~~~ga~S--------~~~l~s~~~ 135 (557)
T PF05876_consen 65 MLYVQPTDDAAKDFSKERLDPMIRASPVLRRKLSPSKSRDSGNTILYKR-FPGGFLYLVGANS--------PSNLRSRPA 135 (557)
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHhCHHHHHHhCchhhcccCCchhhee-cCCCEEEEEeCCC--------CcccccCCc
Confidence 588999999999887 5677777666555422211 01111111111 1223233333320 033444678
Q ss_pred eEEEechhhHhhcc-c-hHHHHHHHHHhCC--CCceEEEEeeeCchH
Q 029993 78 VILVLDEADRLLDM-G-FQKQISYIISRLP--KLRRTGLFSATQTEA 120 (184)
Q Consensus 78 ~~lVvDEaD~l~~~-~-~~~~l~~i~~~l~--~~~q~i~~SAT~~~~ 120 (184)
+++++||.|..-.. + =++-+....++.. .....++..+|.+.+
T Consensus 136 r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~ 182 (557)
T PF05876_consen 136 RYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIE 182 (557)
T ss_pred CEEEEechhhccccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCC
Confidence 89999999998432 1 1222222222221 124556666666533
No 347
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=52.50 E-value=64 Score=24.83 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=34.8
Q ss_pred CcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhccchHHHHHHHHHhCC
Q 029993 52 ANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLP 105 (184)
Q Consensus 52 ~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~ 105 (184)
+-++|-.+..+.+.+.. ..-++. +..+.+|||.- ++......+.++...++
T Consensus 60 ~A~~i~~~~~i~~~i~~-~~~~~~-~~~v~IDEaQF-~~~~~v~~l~~lad~lg 110 (201)
T COG1435 60 EAVVIPSDTDIFDEIAA-LHEKPP-VDCVLIDEAQF-FDEELVYVLNELADRLG 110 (201)
T ss_pred cceecCChHHHHHHHHh-cccCCC-cCEEEEehhHh-CCHHHHHHHHHHHhhcC
Confidence 45667777778887776 322222 88999999974 55556777777777653
No 348
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=52.41 E-value=62 Score=30.12 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=37.3
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHH-cCCcEeeech
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE-EGANLLIGTP 59 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~IlV~TP 59 (184)
.+||.+.|.+.+..+...+.+. ++.+..+.|+....+....... ....|+|+|-
T Consensus 426 pvLIft~s~~~se~ls~~L~~~-----gi~~~~L~a~~~~~E~~ii~~ag~~g~VlIATd 480 (762)
T TIGR03714 426 PVLLITGSVEMSEIYSELLLRE-----GIPHNLLNAQNAAKEAQIIAEAGQKGAVTVATS 480 (762)
T ss_pred CEEEEECcHHHHHHHHHHHHHC-----CCCEEEecCCChHHHHHHHHHcCCCCeEEEEcc
Confidence 4799999999999888887764 5777888887664333222211 2347888886
No 349
>PRK04132 replication factor C small subunit; Provisional
Probab=52.18 E-value=31 Score=32.43 Aligned_cols=37 Identities=27% Similarity=0.246 Sum_probs=25.8
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEE
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~ 113 (184)
+-+.+|+||||.|-.. -...+..+++.-+..+.+++.
T Consensus 630 ~~KVvIIDEaD~Lt~~-AQnALLk~lEep~~~~~FILi 666 (846)
T PRK04132 630 SFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILS 666 (846)
T ss_pred CCEEEEEECcccCCHH-HHHHHHHHhhCCCCCeEEEEE
Confidence 4689999999998543 466666777765555555554
No 350
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=51.55 E-value=16 Score=33.16 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=25.9
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCch
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~ 119 (184)
.+-+.+||||+|.|-...+...+ ..++.-|....+|+. .|-+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALL-KtLEEPp~~v~FIL~-Tt~~~ 160 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALL-KTLEEPPEHVKFLLA-TTDPQ 160 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHH-HHHHcCCCCeEEEEe-cCCcc
Confidence 46789999999988655544443 455554444455554 44333
No 351
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.52 E-value=25 Score=30.90 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=32.9
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEc
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (184)
...-+.+|+||+|.|-...+ +.+...++.-|+...+++.+ |-. ..+..........+...
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat-te~---~Kl~~tI~SRc~~~~f~ 173 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT-TEV---KKIPVTIISRCQRFDLQ 173 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe-CCh---HHHHHHHHHhheeeecc
Confidence 45778999999998755433 34444455555555555543 433 33333333334444443
No 352
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=51.37 E-value=30 Score=28.83 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=16.5
Q ss_pred eEEEechhhHhhccchHHHHHHHHHh
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISR 103 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~ 103 (184)
-.+|+||+|.+......+.+..+++.
T Consensus 140 ~viviDE~d~l~~~~~~~~l~~l~~~ 165 (394)
T PRK00411 140 LIVALDDINYLFEKEGNDVLYSLLRA 165 (394)
T ss_pred EEEEECCHhHhhccCCchHHHHHHHh
Confidence 47899999999733223445555443
No 353
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=51.36 E-value=23 Score=26.81 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=31.8
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
+.-+++++||...-++......+..+++.+.+..++++.|-
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH 174 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITH 174 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEEC
Confidence 45579999999998888788888888888866666555533
No 354
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.60 E-value=17 Score=32.16 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=26.3
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
..+-+.+|+||+|.|-...+ +.+...++.-|....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 34568999999998865443 34445555556666666654
No 355
>PRK04841 transcriptional regulator MalT; Provisional
Probab=50.59 E-value=19 Score=33.46 Aligned_cols=43 Identities=12% Similarity=0.225 Sum_probs=35.1
Q ss_pred ceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCch
Q 029993 77 LVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (184)
Q Consensus 77 l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~ 119 (184)
=-.+|+|++|.+-+......+..+++..|....+++.|-+.++
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 3578999999986566677899999999999999898877543
No 356
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=50.49 E-value=17 Score=28.43 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=34.4
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
..-+++++||-..-++......+..+++.+.+..++++.|-.
T Consensus 187 ~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~ 228 (251)
T cd03273 187 KPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLK 228 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 456899999999988887888888888887667778887766
No 357
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.40 E-value=31 Score=30.70 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=27.2
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
..+-+++|+||||.|-... .+.+...++.-|....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3466899999999976543 445556666666666666654
No 358
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=49.82 E-value=67 Score=20.59 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=33.7
Q ss_pred CEEEEeccH---HHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcC-CcEeeechHHH
Q 029993 1 MGMIISPTR---ELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEG-ANLLIGTPGRL 62 (184)
Q Consensus 1 ~alIl~Ptr---eLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~IlV~TP~~l 62 (184)
|+.|+.... ++.....+....|... ++++..-.++.+...+.+.....| |-++|--+..+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~--gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~ 64 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKA--GIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKEL 64 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHT--TSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHC--CCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhH
Confidence 456666655 4443344444444332 688888778888888877654333 44444444433
No 359
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=48.85 E-value=36 Score=30.64 Aligned_cols=40 Identities=10% Similarity=0.089 Sum_probs=26.9
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
+..-+.+||||+|.|-... .+.+...++.-+..+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999885443 344444566666666777754
No 360
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=48.53 E-value=60 Score=30.46 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=35.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH---HHHHHHcCCcEeeech
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGTP 59 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlV~TP 59 (184)
+||+++||..|..+...++++.. ..+...+|..+.+.. ...+.+++...+|||.
T Consensus 256 tLIF~NTR~~aE~l~~~L~~~~~----~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TS 312 (814)
T COG1201 256 TLIFTNTRSGAERLAFRLKKLGP----DIIEVHHGSLSRELRLEVEERLKEGELKAVVATS 312 (814)
T ss_pred EEEEEeChHHHHHHHHHHHHhcC----CceeeecccccHHHHHHHHHHHhcCCceEEEEcc
Confidence 68999999999999999888753 445555555544332 2334455566666665
No 361
>PF05729 NACHT: NACHT domain
Probab=48.15 E-value=93 Score=21.74 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=34.0
Q ss_pred EEEechhhHhhccc-------hHHHHHHHHHh-CCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEcc
Q 029993 79 ILVLDEADRLLDMG-------FQKQISYIISR-LPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRA 139 (184)
Q Consensus 79 ~lVvDEaD~l~~~~-------~~~~l~~i~~~-l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~ 139 (184)
++|+|-.|.+.... +...+..++.. +++..++++.|.+-.. .. ....+.....+.+..
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~--~~-~~~~~~~~~~~~l~~ 149 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF--PD-LRRRLKQAQILELEP 149 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH--HH-HHHhcCCCcEEEECC
Confidence 48999999987642 33456566665 4556676666543332 22 444555555555544
No 362
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=48.02 E-value=14 Score=28.03 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=37.0
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~ 125 (184)
..+-+++++||--.-+|......+..+++.+.+....++++..-...+..++
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~ 204 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVA 204 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc
Confidence 4567899999999888888888888888877543455666555555544443
No 363
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=47.96 E-value=25 Score=32.33 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=28.9
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
....++|+|||..+ + ...+..+++.++..+|+++++-.
T Consensus 415 ~~~~llIvDEaSMv-d---~~~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 415 IDCDLLIVDESSMM-D---TWLALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred ccCCEEEEeccccC-C---HHHHHHHHHhCCCCCEEEEECcc
Confidence 35689999999854 3 34567778888888999987655
No 364
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=47.87 E-value=31 Score=31.71 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=26.4
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
..+-+++||||+|.|-... ...+...++.-+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3466899999999765433 344555566656666676654
No 365
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=47.69 E-value=85 Score=29.52 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=43.1
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCc--chHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGV--EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVI 79 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~ 79 (184)
+||++||.+...++++.+....... +..+ +..+. +...-.+...+.+..|++|| +.+.+.+. +.=..+..
T Consensus 677 ~LVlftS~~~l~~v~~~L~~~~~~~-~~~~--l~q~~~~~r~~ll~~F~~~~~~iLlgt-~sf~EGVD----~~g~~l~~ 748 (850)
T TIGR01407 677 ILVLFTSYEMLHMVYDMLNELPEFE-GYEV--LAQGINGSRAKIKKRFNNGEKAILLGT-SSFWEGVD----FPGNGLVC 748 (850)
T ss_pred EEEEeCCHHHHHHHHHHHhhhcccc-CceE--EecCCCccHHHHHHHHHhCCCeEEEEc-ceeecccc----cCCCceEE
Confidence 7999999999999999887643221 3332 23332 23333333334456799999 44443222 22245667
Q ss_pred EEec
Q 029993 80 LVLD 83 (184)
Q Consensus 80 lVvD 83 (184)
+|++
T Consensus 749 viI~ 752 (850)
T TIGR01407 749 LVIP 752 (850)
T ss_pred EEEe
Confidence 7763
No 366
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=47.30 E-value=71 Score=20.10 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=29.6
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCc
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGAN 53 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 53 (184)
++|+..+.+.-.+.......|.. . ++++..-..+.+.+.+.......|+.
T Consensus 4 v~ii~~~~~~~~~a~~~~~~Lr~-~-g~~v~~d~~~~~~~~~~~~a~~~g~~ 53 (91)
T cd00860 4 VVVIPVTDEHLDYAKEVAKKLSD-A-GIRVEVDLRNEKLGKKIREAQLQKIP 53 (91)
T ss_pred EEEEeeCchHHHHHHHHHHHHHH-C-CCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 35555555544444444555533 2 67887766777777777665555544
No 367
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.25 E-value=21 Score=31.28 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=17.2
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHh
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISR 103 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~ 103 (184)
.-+.+|+||||.|-...+... ...++.
T Consensus 121 ~~KV~IIDEah~Ls~~A~NAL-LKtLEE 147 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQSFNAL-LKTLEE 147 (484)
T ss_pred CCEEEEEechhhcCHHHHHHH-HHHhhc
Confidence 467999999998755443333 333443
No 368
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=46.80 E-value=21 Score=26.86 Aligned_cols=54 Identities=9% Similarity=0.145 Sum_probs=27.7
Q ss_pred CceEEEechhhHhhccchH-----HHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhC
Q 029993 76 NLVILVLDEADRLLDMGFQ-----KQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~-----~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~ 129 (184)
.=.++|+|||+..+..... +.....+...++...-+++..--+..+....+...
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lv 137 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLV 137 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHH
Confidence 3468999999998875322 22225555555544455554444455566555543
No 369
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.68 E-value=31 Score=32.73 Aligned_cols=45 Identities=13% Similarity=0.165 Sum_probs=28.0
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHH
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v 121 (184)
.+-+.+||||||.|-... .+.+..+++.-|....+|+. +|-+..+
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa-TTe~~kL 162 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA-TTDPQKL 162 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE-CCCchhc
Confidence 456899999999985443 44445556655555566664 4444443
No 370
>CHL00181 cbbX CbbX; Provisional
Probab=46.61 E-value=37 Score=27.43 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=26.3
Q ss_pred eEEEechhhHhhcc----chHHH-HHHHHHhCCCC-ceEEEEeeeCchHHHHHH
Q 029993 78 VILVLDEADRLLDM----GFQKQ-ISYIISRLPKL-RRTGLFSATQTEAVEELS 125 (184)
Q Consensus 78 ~~lVvDEaD~l~~~----~~~~~-l~~i~~~l~~~-~q~i~~SAT~~~~v~~~~ 125 (184)
..+++||+|.+... ++... +..++..+... ...++..|+.++++..+.
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~ 177 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFY 177 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHH
Confidence 58999999998532 23333 33344444221 234455567766655433
No 371
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=46.53 E-value=88 Score=28.57 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=45.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchH-----------------------HHHHHHH-H-cCCcEee
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVK-----------------------ADVKKIE-E-EGANLLI 56 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------------~~~~~l~-~-~~~~IlV 56 (184)
|+|++.+|+-|...++.+.++....-+......+++...+ .+....+ + .+++|+|
T Consensus 517 amvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilI 596 (667)
T TIGR00348 517 AMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLI 596 (667)
T ss_pred eeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEE
Confidence 7899999999999999888874322012233333322111 0111111 1 3578888
Q ss_pred echHHHHHHHHhcCCccCCCceEEEechh
Q 029993 57 GTPGRLYDIMERMDVLDFRNLVILVLDEA 85 (184)
Q Consensus 57 ~TP~~l~~~~~~~~~~~~~~l~~lVvDEa 85 (184)
.+ ++|+ .++|...+..+.+|--
T Consensus 597 Vv-dmll------TGFDaP~l~tLyldKp 618 (667)
T TIGR00348 597 VV-DMLL------TGFDAPILNTLYLDKP 618 (667)
T ss_pred EE-cccc------cccCCCccceEEEecc
Confidence 88 3444 3677788888887764
No 372
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=46.52 E-value=63 Score=20.65 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=26.7
Q ss_pred EEEEeccHH-HHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechH
Q 029993 2 GMIISPTRE-LSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60 (184)
Q Consensus 2 alIl~Ptre-La~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~ 60 (184)
++++||+.- .+..+...+++..+.. ++....-..+. .+.... ..++|++++|+.
T Consensus 3 ilivC~~G~~tS~~l~~~i~~~~~~~-~i~~~v~~~~~---~~~~~~-~~~~Dliist~~ 57 (89)
T cd05566 3 ILVACGTGVATSTVVASKVKELLKEN-GIDVKVEQCKI---AEVPSL-LDDADLIVSTTK 57 (89)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHC-CCceEEEEecH---HHhhcc-cCCCcEEEEcCC
Confidence 577887743 3444555555554433 33222211111 111111 257999999994
No 373
>PRK04296 thymidine kinase; Provisional
Probab=46.17 E-value=21 Score=26.79 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=29.0
Q ss_pred eechHHHHHHHHhcCCccCCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 56 IGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 56 V~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
+..+..+.+.+.. .-.+..++|+|||+.+ + .+++..+++.+.+.-..+++++-
T Consensus 62 ~~~~~~~~~~~~~----~~~~~dvviIDEaq~l-~---~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 62 VSSDTDIFELIEE----EGEKIDCVLIDEAQFL-D---KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred eCChHHHHHHHHh----hCCCCCEEEEEccccC-C---HHHHHHHHHHHHHcCCeEEEEec
Confidence 4455555555543 2245679999999643 1 34456666664433344444433
No 374
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=45.93 E-value=84 Score=24.74 Aligned_cols=59 Identities=25% Similarity=0.399 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhhcCC---CceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhc--CCccCCCceEEEec
Q 029993 9 RELSAQIYHVAQPFISTLP---DVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM--DVLDFRNLVILVLD 83 (184)
Q Consensus 9 reLa~Qi~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~--~~~~~~~l~~lVvD 83 (184)
.+++....+.+........ +--+..+.||+ ||..+.+.+-.. +.++++++.++-+|
T Consensus 10 ~~~~~~~a~~i~~~~~~~~~~~~~~~l~LsgGs-------------------TP~~~ye~L~~~~~~~~~w~~v~~f~~D 70 (238)
T COG0363 10 EELAKAAAEIIADKLQAAKAERGRAVLALSGGS-------------------TPLALYEALVKLPQGQLDWSKVTIFNLD 70 (238)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCcEEEEECCCC-------------------CHHHHHHHHHhhhccCCCchheEEEecc
Confidence 5666666666665544321 12234445544 455555555441 35999999999999
Q ss_pred hhh
Q 029993 84 EAD 86 (184)
Q Consensus 84 EaD 86 (184)
|-=
T Consensus 71 Er~ 73 (238)
T COG0363 71 ERV 73 (238)
T ss_pred ccc
Confidence 963
No 375
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=45.84 E-value=27 Score=26.78 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=33.5
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
.-+.+++||...=++......+..+++.+.+..++++.|
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs 187 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVIS 187 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 357999999999888888889999999987778888887
No 376
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.78 E-value=14 Score=26.55 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=33.6
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~ 122 (184)
..+.+++++||...=++......+.+++..+....+.++++..-...+.
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3457899999999888877788888888777554345555544444333
No 377
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=45.36 E-value=32 Score=31.93 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=28.1
Q ss_pred eEEEechhhHhhccch----HHHHHHHHHhCCCCceEEEEeeeCchHH
Q 029993 78 VILVLDEADRLLDMGF----QKQISYIISRLPKLRRTGLFSATQTEAV 121 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~----~~~l~~i~~~l~~~~q~i~~SAT~~~~v 121 (184)
.++++||+|.+++.+. ..++.++++.+-..-++.+.+||=.++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 4899999999976432 3455555655544455666667765553
No 378
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=45.18 E-value=32 Score=28.40 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=27.0
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
...-+++|||+||.|-... ...+..+++.=|..+.+++.|.
T Consensus 111 ~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 111 YGIAQVVIVDPADAINRAA-CNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred cCCcEEEEeccHhhhCHHH-HHHHHHHhhCCCCCCeEEEEEC
Confidence 3467999999999996554 3334445555555666666654
No 379
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.14 E-value=34 Score=30.75 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=28.0
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCch
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~ 119 (184)
...-+.+|+||+|.|-... .+.+...++..|...-+|+.+ |-+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t-te~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT-TEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe-CChH
Confidence 4567899999999886543 344455566656555556544 4443
No 380
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=45.00 E-value=1.7e+02 Score=23.82 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=22.6
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEE
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~ 113 (184)
+..-+.+|+||||.+-...+ +.+...+...+....+|+.
T Consensus 115 ~~~~~vviidea~~l~~~~~-~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLSKSAF-NALLKTLEEPPEHVVFILA 153 (355)
T ss_pred cCCceEEEEeChhhcCHHHH-HHHHHHHhCCccceeEEEE
Confidence 45668999999998854322 2333334444444445554
No 381
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=44.88 E-value=31 Score=29.82 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=24.3
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
.+-+++|+||+|.|-... .+.+...++.-+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 567899999999985432 334444555544555555543
No 382
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=44.74 E-value=34 Score=28.77 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=28.1
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~ 117 (184)
-..-+.+||||+|.|-.. -...+...++.-+..+.++++|...
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 356789999999987443 3445556666655566666655443
No 383
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=44.42 E-value=19 Score=27.33 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=37.3
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~ 125 (184)
..+-+++++||--.-++......+..+++.+.+. ..++++..-...+..++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~ 199 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKG-RSIILTTHSMDEAEALC 199 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhc
Confidence 5677899999999988888888888888887665 55666555544444444
No 384
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=44.35 E-value=12 Score=19.79 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=14.9
Q ss_pred EechhhHhhccchHHHHHHHHH
Q 029993 81 VLDEADRLLDMGFQKQISYIIS 102 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~ 102 (184)
++||+|.+++.+-.+.++..++
T Consensus 8 lLDeId~vLe~NAe~FV~~fVQ 29 (33)
T TIGR03687 8 LLDEIDGVLESNAEEFVRGFVQ 29 (33)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 4688888887766666655443
No 385
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=44.00 E-value=91 Score=27.80 Aligned_cols=96 Identities=15% Similarity=0.079 Sum_probs=54.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHH---HHHHHHh-cCCccCCCc
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGR---LYDIMER-MDVLDFRNL 77 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~---l~~~~~~-~~~~~~~~l 77 (184)
-.|++||.+=|.+.+..++......++++... +...|-...+-+. ....+.. .+..+=.+-
T Consensus 121 ~~i~A~s~~qa~~~F~~ar~mv~~~~~l~~~~---------------~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~ 185 (546)
T COG4626 121 IYILAPSVEQAANSFNPARDMVKRDDDLRDLC---------------NVQTHSRTITHRKTDSTIKAVAADPNTVDGLNS 185 (546)
T ss_pred EEEEeccHHHHHHhhHHHHHHHHhCcchhhhh---------------ccccceeEEEecccceeeeeeccCCCcccCCCc
Confidence 36889999988888888888776554222111 1122222222222 2222222 234444556
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCc--eEEEEe
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLR--RTGLFS 114 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~--q~i~~S 114 (184)
.+.|+||.|...+.+ +.+..+...+...+ +++..|
T Consensus 186 ~~~I~DEih~f~~~~--~~~~~~~~g~~ar~~~l~~~IT 222 (546)
T COG4626 186 VGAIIDELHLFGKQE--DMYSEAKGGLGARPEGLVVYIT 222 (546)
T ss_pred ceEEEehhhhhcCHH--HHHHHHHhhhccCcCceEEEEe
Confidence 789999999765442 67777777776544 444433
No 386
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=43.57 E-value=29 Score=33.13 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=33.7
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
..-.++++||.+.-++......+..++..+.+..|+++.|--
T Consensus 1110 ~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~ 1151 (1179)
T TIGR02168 1110 KPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHN 1151 (1179)
T ss_pred CCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcC
Confidence 456799999999999888888888888888777786665544
No 387
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=43.32 E-value=30 Score=28.47 Aligned_cols=41 Identities=10% Similarity=0.146 Sum_probs=27.5
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
...-+++|+||||.|-... .+.+...++.-|+.+.+++.+.
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 4567999999999986543 4455555666566666666443
No 388
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=42.91 E-value=40 Score=27.56 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=20.7
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhC
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRL 104 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l 104 (184)
.+.++.+++||||+|.-.+ .+.++.+....
T Consensus 163 ~~~~~~iivDEA~~L~~~a-le~lr~i~d~~ 192 (297)
T COG2842 163 RDTVRLIIVDEADRLPYRA-LEELRRIHDKT 192 (297)
T ss_pred ccCcceeeeehhhccChHH-HHHHHHHHHhh
Confidence 5778999999999985443 34455555444
No 389
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.90 E-value=64 Score=27.38 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=22.2
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
.-.++++||+|.+.... .+ .++..+. ...++++++|-.
T Consensus 92 ~~~vL~IDEi~~l~~~~-q~---~LL~~le-~~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQ-QD---ALLPHVE-DGTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCHHH-HH---HHHHHhh-cCcEEEEEeCCC
Confidence 45689999999875321 22 2333332 345666666643
No 390
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=42.78 E-value=16 Score=29.66 Aligned_cols=54 Identities=30% Similarity=0.315 Sum_probs=44.2
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCc-eEEEEeeeCchHHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLR-RTGLFSATQTEAVEELSKA 127 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~-q~i~~SAT~~~~v~~~~~~ 127 (184)
+.+-+++++||--.=+|......+..+++.+.+.- .+|++|.....+++.++..
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDR 206 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCE
Confidence 45668999999977677777888888999888766 5999999999988877663
No 391
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.65 E-value=42 Score=30.41 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=23.8
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~ 120 (184)
..+-+++||||+|.|-... ...+...++.-+....+|+ .+|-+..
T Consensus 117 ~g~~kVIIIDEad~Lt~~a-~naLLk~LEEP~~~~ifIL-aTt~~~k 161 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREA-FNALLKTLEEPPARVTFVL-ATTEPHK 161 (624)
T ss_pred cCCceEEEEEChHhCCHHH-HHHHHHHhhccCCCEEEEE-ecCChhh
Confidence 3456899999999885332 2333333433233333443 3444333
No 392
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.61 E-value=21 Score=26.92 Aligned_cols=53 Identities=30% Similarity=0.329 Sum_probs=36.6
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
..+-+++++||--.-++......+..+++.+.+....++++..-...+..++.
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d 196 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCD 196 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhh
Confidence 45668999999998888877888888887775433456655554444444444
No 393
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=42.43 E-value=42 Score=28.55 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=25.7
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
..+-+.+++||+|.|-... .+.+...++.-++..-+++.+.+
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEECC
Confidence 3567899999999986543 34444455554445555554433
No 394
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.15 E-value=41 Score=30.48 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=25.5
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
.+.+.+||||+|.|-...+.. +...++.-|....+|+. +|-+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~Na-LLKtLEEPP~~~~fIL~-Ttd~ 164 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNA-MLKTLEEPPEYLKFVLA-TTDP 164 (618)
T ss_pred CCceEEEEEChhhCCHHHHHH-HHHhcccCCCCeEEEEE-ECCc
Confidence 457899999999886554433 33444444444555554 3443
No 395
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=42.15 E-value=56 Score=25.71 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=17.6
Q ss_pred eEEEechhhHhhccc---h-HHHHHHHHHhCC
Q 029993 78 VILVLDEADRLLDMG---F-QKQISYIISRLP 105 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~---~-~~~l~~i~~~l~ 105 (184)
..+++||+|.|...+ + .+.+..+++.+.
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e 138 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGME 138 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHh
Confidence 489999999986421 2 234555555553
No 396
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=41.71 E-value=19 Score=27.22 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=36.1
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~ 125 (184)
..+-+++++||--.=++......+..+++.+.+....++++..-...+..++
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~ 201 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELA 201 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 4566899999998888887888888888777544445666555554444433
No 397
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=40.89 E-value=2.1e+02 Score=25.97 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=44.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
.+|++.|.-=+.-++..|.++ -|++.+..++|+.+-..... ...+...-|++||-- -. +.+||..+.
T Consensus 316 ~iVF~SscKqvkf~~e~F~rl---rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv------~a-RGLDFpaVd 385 (758)
T KOG0343|consen 316 SIVFLSSCKQVKFLYEAFCRL---RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDV------AA-RGLDFPAVD 385 (758)
T ss_pred eEEEEehhhHHHHHHHHHHhc---CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehh------hh-ccCCCcccc
Confidence 356666665566666666665 46889999999876554432 222346678888861 22 567776666
Q ss_pred EEE
Q 029993 79 ILV 81 (184)
Q Consensus 79 ~lV 81 (184)
++|
T Consensus 386 wVi 388 (758)
T KOG0343|consen 386 WVI 388 (758)
T ss_pred eEE
Confidence 665
No 398
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=40.86 E-value=35 Score=25.89 Aligned_cols=43 Identities=23% Similarity=0.107 Sum_probs=32.5
Q ss_pred CCCceEEEechhhHhhccchHH-HHHHHHHhCCC--CceEEEEeee
Q 029993 74 FRNLVILVLDEADRLLDMGFQK-QISYIISRLPK--LRRTGLFSAT 116 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~-~l~~i~~~l~~--~~q~i~~SAT 116 (184)
..+-+++++||...-++..... .+..++..+.+ ..++++.|-.
T Consensus 137 ~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 137 GSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred ccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 3567899999999988877777 88888888765 4566665543
No 399
>KOG4284 consensus DEAD box protein [Transcription]
Probab=40.20 E-value=35 Score=31.28 Aligned_cols=69 Identities=12% Similarity=0.194 Sum_probs=42.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
||||++...-.|.-+...+.. .++-+.++.|..+-.+.. ..+.+-.+.|+|+|-- .. +.+|-.++
T Consensus 274 QAlVF~~~~sra~~~a~~L~s-----sG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDL------ta-RGIDa~~v 341 (980)
T KOG4284|consen 274 QALVFCDQISRAEPIATHLKS-----SGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDL------TA-RGIDADNV 341 (980)
T ss_pred HHHhhhhhhhhhhHHHHHhhc-----cCCCeEEeccccchhHHHHHHHHhhhceEEEEEecch------hh-ccCCcccc
Confidence 355555555444444333322 378888888877655443 3444567999999972 22 67888888
Q ss_pred eEEE
Q 029993 78 VILV 81 (184)
Q Consensus 78 ~~lV 81 (184)
.++|
T Consensus 342 NLVV 345 (980)
T KOG4284|consen 342 NLVV 345 (980)
T ss_pred ceEE
Confidence 7776
No 400
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=40.18 E-value=24 Score=27.42 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=37.3
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
..+-+++++||.-.-++......+..+++.+.+....++++..-...+..++.
T Consensus 160 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d 212 (250)
T PRK11264 160 AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVAD 212 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 35668999999999888888888888888775544466665555444444443
No 401
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=39.97 E-value=24 Score=29.52 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=21.1
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCC
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPK 106 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~ 106 (184)
+++++++|+||+-. ........+...++.+.+
T Consensus 100 l~~~~~lIiDEism-~~~~~l~~i~~~lr~i~~ 131 (364)
T PF05970_consen 100 LRKADVLIIDEISM-VSADMLDAIDRRLRDIRK 131 (364)
T ss_pred hhhheeeecccccc-hhHHHHHHHHHhhhhhhc
Confidence 56779999999974 444455566555555443
No 402
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=39.78 E-value=1.1e+02 Score=27.59 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=40.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeech
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTP 59 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP 59 (184)
++|-|.||--+.++.+.+..- ++++...++|.+.++.. ....++...|+|||-
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~-----g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~ 288 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKN-----GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATN 288 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHC-----CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEec
Confidence 588999999999998888774 67888888887654432 233457789999996
No 403
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=39.71 E-value=98 Score=19.57 Aligned_cols=52 Identities=8% Similarity=0.118 Sum_probs=28.0
Q ss_pred EEEEeccHH-HHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechH
Q 029993 2 GMIISPTRE-LSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60 (184)
Q Consensus 2 alIl~Ptre-La~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~ 60 (184)
++++||+.- .+.-+...+++..+.. ++....-..+. .+. . ..++|++++|..
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~-~i~~~~~~~~~--~~~--~--~~~~DlIisT~~ 54 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKEL-GIEAEVEHTDL--GSA--K--ASSADIIVTSKD 54 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHC-CCcEEEEEecc--ccc--C--CCCCCEEEEchh
Confidence 678888743 4455555666655444 33322211111 111 1 257899999994
No 404
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.60 E-value=36 Score=30.44 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=25.8
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
..+-+.+|+||+|.|-... .+.+...++.-+...-+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 4567899999999875443 445555566555555555543
No 405
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=39.43 E-value=26 Score=30.96 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=21.3
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIIS 102 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~ 102 (184)
..+-|.+|+||+|.|-...|...++.+-+
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALLKTLEE 145 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALLKTLEE 145 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHhccccc
Confidence 45778999999998766667666655433
No 406
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.43 E-value=18 Score=26.59 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=35.4
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCC-ceEEEEeeeCchHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVE 122 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~-~q~i~~SAT~~~~v~ 122 (184)
..+-+++++||--.=+|......+..+++.+.+. ...++++..-...+.
T Consensus 116 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 116 AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 5667899999998888888888888888877654 355666555544443
No 407
>PRK14974 cell division protein FtsY; Provisional
Probab=39.06 E-value=60 Score=27.00 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=40.8
Q ss_pred CceEEEechhhHhh-ccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhC
Q 029993 76 NLVILVLDEADRLL-DMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (184)
Q Consensus 76 ~l~~lVvDEaD~l~-~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~ 129 (184)
+..++++|.|-++- +......+..+.+...+..-++.++|+...+....++.|.
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 45689999998875 3356677788887777777788889998877666666654
No 408
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=38.95 E-value=19 Score=27.09 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=35.2
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEEL 124 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~ 124 (184)
..+-+++++||--.=++......+..+++.+.+....++++..-...+..+
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~ 192 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV 192 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 456689999999888888778888888877744444566655554444433
No 409
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=38.91 E-value=94 Score=26.82 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=23.5
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLP 27 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~ 27 (184)
+++.++++++|+.++.+.+.+....+|
T Consensus 259 ~~iLvT~s~~la~~V~~~v~~ql~~l~ 285 (426)
T PRK12447 259 PAVLITTSRKLAEEVLAEIERLLAILP 285 (426)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHhCC
Confidence 478999999999999999998877664
No 410
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.90 E-value=61 Score=27.43 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=24.8
Q ss_pred cCCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 73 DFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 73 ~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
.+..-+.+|+||+|.|-.... +.+...++..+....+|+.+
T Consensus 124 ~~~~~kvvIIdea~~l~~~~~-~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 124 QKGRYRVYIIDEVHMLSIAAF-NAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred hcCCeEEEEEeChhhCCHHHH-HHHHHHHhcCCCCeEEEEEe
Confidence 356778999999999865332 33334445444445555544
No 411
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=38.74 E-value=70 Score=27.37 Aligned_cols=64 Identities=25% Similarity=0.230 Sum_probs=42.2
Q ss_pred CceEEEechhhHhhccc--hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccC
Q 029993 76 NLVILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~--~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (184)
..-++|+|.||.+.+++ ..+.+-++-.-++...-.+++|++..+.. ...+-...+++.+...+-
T Consensus 115 ~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~-y~~n~g~~~i~~l~fP~Y 180 (438)
T KOG2543|consen 115 QKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQ-YLINTGTLEIVVLHFPQY 180 (438)
T ss_pred ceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHH-hhcccCCCCceEEecCCC
Confidence 35689999999998775 44555566666666677888999987642 122233446666665543
No 412
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=38.71 E-value=23 Score=26.15 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=35.6
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~ 125 (184)
+.+-+++++||--.-++......+..+++.+......++++..-...+..++
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~ 171 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLC 171 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 4667899999998888887888888888877543345555544444444433
No 413
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=38.60 E-value=1.2e+02 Score=27.33 Aligned_cols=72 Identities=21% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCCceEEEEEC-----CcchHHHHHHHHHcCCcEeeechHHHHHHH-----------------HhcCCccC
Q 029993 17 HVAQPFISTLPDVKSMLLVG-----GVEVKADVKKIEEEGANLLIGTPGRLYDIM-----------------ERMDVLDF 74 (184)
Q Consensus 17 ~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~-----------------~~~~~~~~ 74 (184)
++.++| .++.++-.+++| ..-...+.-...+...-=||--|+-|..+. .. ..-.=
T Consensus 246 ~vie~l--Gi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r-~~g~~ 322 (744)
T KOG0741|consen 246 EVIEQL--GIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQR-RLGAN 322 (744)
T ss_pred HHHHHc--CccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHH-hhCcc
Q ss_pred CCceEEEechhhHhhcc
Q 029993 75 RNLVILVLDEADRLLDM 91 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~ 91 (184)
+.|..+|+||.|.++.+
T Consensus 323 SgLHIIIFDEiDAICKq 339 (744)
T KOG0741|consen 323 SGLHIIIFDEIDAICKQ 339 (744)
T ss_pred CCceEEEehhhHHHHHh
No 414
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=38.40 E-value=46 Score=25.97 Aligned_cols=40 Identities=23% Similarity=0.125 Sum_probs=31.4
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCC-CceEEEEee
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSA 115 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~-~~q~i~~SA 115 (184)
.-+++++||...-++......+..++..+.+ ..++++.|-
T Consensus 177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH 217 (247)
T cd03275 177 PAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISL 217 (247)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEEC
Confidence 4579999999999988888888888888865 456666554
No 415
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=38.19 E-value=1.5e+02 Score=25.04 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCccCCCceEEEechhhHhhccchHHHHHHHHHh
Q 029993 61 RLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISR 103 (184)
Q Consensus 61 ~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~ 103 (184)
.|+..++. +.-..+.--+||+||.|-.........+-+++..
T Consensus 123 ~lL~~L~~-~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDi 164 (408)
T KOG2228|consen 123 KLLEALKK-GDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDI 164 (408)
T ss_pred HHHHHHhc-CCCCCCceEEEEeehhhccccchhhHHHHHHHHH
Confidence 34555555 4444455578999999987766555555555443
No 416
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=38.15 E-value=66 Score=24.26 Aligned_cols=37 Identities=8% Similarity=-0.032 Sum_probs=21.9
Q ss_pred CceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHH
Q 029993 28 DVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYD 64 (184)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~ 64 (184)
++++...............+.++.+|++++||.+-..
T Consensus 34 g~~i~~~~~~~~~~~~~~~l~~g~~Di~~~~~~r~~~ 70 (232)
T TIGR03871 34 GLPLEYTWFPQRRGFVRNTLNAGRCDVVIGVPAGYEM 70 (232)
T ss_pred CCceEEEecCcchhhHHHHHhcCCccEEEeccCcccc
Confidence 5565544433323333345556789999999876433
No 417
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=38.07 E-value=93 Score=25.92 Aligned_cols=71 Identities=15% Similarity=0.299 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhhcCCCceEEE-----EEC--CcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechh
Q 029993 13 AQIYHVAQPFISTLPDVKSML-----LVG--GVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEA 85 (184)
Q Consensus 13 ~Qi~~~~~~l~~~~~~~~~~~-----~~~--~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEa 85 (184)
.+.+.-.+++.+.+ ++.+.. ..+ +....+-.+.+.+.+.++|++|--.+.+.+.. -.-++-+++|+++|..
T Consensus 53 ~~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~~lI~~~gf~~~d~~~~-va~~~Pd~~F~iid~~ 130 (345)
T COG1744 53 QSAYEGLLKAKKEL-GLKVETYYWEYVQSDSEADYERALRALAEDGYDLIFGTGFAFSDALEK-VAAEYPDVKFVIIDGV 130 (345)
T ss_pred HHHHHHHHHHHHHh-CCceEeeeeeecCCcchhHHHHHHHHHHhcCCCEEEEeccchhhHHHH-HHHHCCCCEEEEecCc
Confidence 34455555555555 444444 222 23344455566678999999999999888876 3334678999999983
No 418
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=37.87 E-value=31 Score=27.91 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=39.7
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~ 127 (184)
+.+-+++++||--.=++......+..+++.+.+. ..++++.....++.+++..
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~-~tiii~sH~l~~~~~~~d~ 201 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD-KTIILSTHIMQEVEAICDR 201 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCC-CEEEEEcCCHHHHHHhCCE
Confidence 5667899999998888877788888888888654 5666666666666665554
No 419
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=37.79 E-value=2e+02 Score=22.68 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=43.3
Q ss_pred HHHHHHHhhhcCCCceEEEEECCcchH------HHHHHHHHcCCcEeeechHHHHHHHHhc---CC-----cc-CCCceE
Q 029993 15 IYHVAQPFISTLPDVKSMLLVGGVEVK------ADVKKIEEEGANLLIGTPGRLYDIMERM---DV-----LD-FRNLVI 79 (184)
Q Consensus 15 i~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~IlV~TP~~l~~~~~~~---~~-----~~-~~~l~~ 79 (184)
....+..+...++......++|+...+ .-...+...|..|++.|-..+..-++.. +. .. ++++..
T Consensus 91 ~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dl 170 (254)
T COG1484 91 ALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDL 170 (254)
T ss_pred HHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCE
Confidence 344455555455566778888865322 1122333456777755544554444431 11 23 889999
Q ss_pred EEechhhHhhcc
Q 029993 80 LVLDEADRLLDM 91 (184)
Q Consensus 80 lVvDEaD~l~~~ 91 (184)
||+||.=..-..
T Consensus 171 LIiDDlG~~~~~ 182 (254)
T COG1484 171 LIIDDIGYEPFS 182 (254)
T ss_pred EEEecccCccCC
Confidence 999998765433
No 420
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.62 E-value=42 Score=26.75 Aligned_cols=41 Identities=12% Similarity=0.166 Sum_probs=32.0
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
+-+++++||...-++......+..++..+.+.+++++.|-.
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~ 232 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHL 232 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEech
Confidence 67899999999888887788888888777666666666554
No 421
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=37.58 E-value=63 Score=28.52 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=31.2
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEcc
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRA 139 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~ 139 (184)
+.+-+.+|+||+|.|-...+. .+...++.-+. .-+++|.+|-. ..+..........+....
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~n-aLLk~LEepp~-~~vfI~aTte~---~kI~~tI~SRc~~~ef~~ 186 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFN-ALLKTLEEPPP-HIIFIFATTEV---QKIPATIISRCQRYDLRR 186 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHH-HHHHHHhhcCC-CEEEEEEeCCh---HHhhHHHHhcceEEEccC
Confidence 356689999999987543333 33344444333 33333444433 333333334445555443
No 422
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=36.98 E-value=1.3e+02 Score=26.29 Aligned_cols=76 Identities=13% Similarity=0.058 Sum_probs=42.5
Q ss_pred EEec--cHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 4 IISP--TRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 4 Il~P--treLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+.+| +++.....+..+..+++.+ +.....+..+.+..+....+.+.+||++||-. . ....+....+-+
T Consensus 343 vgt~~~~~~~~~~d~~~l~~~~~~~-~~~~~vive~~D~~el~~~i~~~~pDLlIgG~-------~--~~~Pl~~~G~p~ 412 (457)
T CHL00073 343 IGIPYMDKRYQAAELALLEDTCRKM-NVPMPRIVEKPDNYNQIQRIRELQPDLAITGM-------A--HANPLEARGINT 412 (457)
T ss_pred EEeCCCChhhhHHHHHHHHHHhhhc-CCCCcEEEeCCCHHHHHHHHhhCCCCEEEccc-------c--ccCchhhcCCcc
Confidence 4556 5565555555566655543 33333334445555555666667899999883 1 334455556666
Q ss_pred echhhHhh
Q 029993 82 LDEADRLL 89 (184)
Q Consensus 82 vDEaD~l~ 89 (184)
.|-+...+
T Consensus 413 ~d~~~~~~ 420 (457)
T CHL00073 413 KWSVEFTF 420 (457)
T ss_pred eEecceEE
Confidence 66555444
No 423
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=36.80 E-value=51 Score=30.99 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=38.6
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCch
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~ 119 (184)
.+-=++|+|+-|.+-+......++.+++..|.+-+.++.|=+-|+
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 334599999999998888899999999999999999988876653
No 424
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=36.80 E-value=25 Score=25.57 Aligned_cols=51 Identities=25% Similarity=0.300 Sum_probs=34.3
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEEL 124 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~ 124 (184)
..+-+++++||--.=++......+..+++.+.+....++++..-...+..+
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 148 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI 148 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 455689999999888888788888888877754344555544443333333
No 425
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=36.72 E-value=67 Score=20.91 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=19.4
Q ss_pred cCCCceEEEechhhHhhccchHHHHHHHHH
Q 029993 73 DFRNLVILVLDEADRLLDMGFQKQISYIIS 102 (184)
Q Consensus 73 ~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~ 102 (184)
.-..++++++|||-.=++......+..+++
T Consensus 60 ~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~ 89 (90)
T PF13558_consen 60 RGDSPRLLFLDEAFSKLDEENIERLMDLLR 89 (90)
T ss_dssp S-TTBSEEEEESTTTTCGHHHHHHHHHHHH
T ss_pred CCCCcCEEEEeCCCCcCCHHHHHHHHHHHh
Confidence 466799999999955555545555554443
No 426
>PRK13769 histidinol dehydrogenase; Provisional
Probab=36.61 E-value=1.1e+02 Score=25.82 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=42.3
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH-HHHHHHcCCcEeeechHHHHHHHHhcCCccC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD-VKKIEEEGANLLIGTPGRLYDIMERMDVLDF 74 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~ 74 (184)
+++.++++++|+.++.+.+.+......+.-...++.+....-. .+.. .+-|+.+.||..++..+++.+.+.+
T Consensus 227 ~~iLvT~s~~la~~V~~~v~~~~~~~~~~~~iivv~~leeai~~~N~~--APEHLel~~~~~~~~~i~nAGsiFl 299 (368)
T PRK13769 227 FAYLLSTDAELLKAAEEIYRRERTSSMGPLEVRKVAGVEEAVRFIDEI--APEHLEVWGRREVAYRVRNVGAVSV 299 (368)
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhcCCCCeEEEECCHHHHHHHHHhh--ChHheEeeCcHHHHhhCCccCChhc
Confidence 4788999999999999998875332101111233333322222 2222 2447777788887777777555543
No 427
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=36.53 E-value=1.2e+02 Score=24.66 Aligned_cols=42 Identities=7% Similarity=0.165 Sum_probs=25.4
Q ss_pred CCcEeeechH-------HHHHHHHhc-CCccCCCceEEEechhhHhhccc
Q 029993 51 GANLLIGTPG-------RLYDIMERM-DVLDFRNLVILVLDEADRLLDMG 92 (184)
Q Consensus 51 ~~~IlV~TP~-------~l~~~~~~~-~~~~~~~l~~lVvDEaD~l~~~~ 92 (184)
.||+.+-.|. .+.++.... ....-..-+.+|+|+||.|-...
T Consensus 71 HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~A 120 (290)
T PRK07276 71 FSDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNA 120 (290)
T ss_pred CCCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHH
Confidence 4888887774 233333221 11123456899999999986543
No 428
>PLN02926 histidinol dehydrogenase
Probab=36.30 E-value=99 Score=26.75 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=23.5
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLP 27 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~ 27 (184)
+++.++++.+|+.++.+.+.+..+.+|
T Consensus 268 ~aiLvT~s~~la~~V~~~v~~ql~~l~ 294 (431)
T PLN02926 268 QVVLVAVGDVDLDAIEEEVEKQCQSLP 294 (431)
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCC
Confidence 478999999999999999998877664
No 429
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A ....
Probab=36.27 E-value=27 Score=24.02 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechH
Q 029993 9 RELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPG 60 (184)
Q Consensus 9 reLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~ 60 (184)
|+=+.++.+.+.+....+.+--.+.++|+...+.+ ..+-.||||+.|+
T Consensus 4 R~Ev~~i~~~V~~~~~~i~p~~~v~i~GSyRRGK~----~~gDiDiLIt~~~ 51 (112)
T PF14792_consen 4 RDEVEEIEEIVKEALEKIDPGLEVEICGSYRRGKE----TSGDIDILITHPD 51 (112)
T ss_dssp HHHHHHHHHHHHHHHHCCSTT-EEEEEHHHHTT-S----EESSEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEccccccCCC----cCCCeEEEEeCCC
Confidence 45567777777776665523334556665543332 1456899999994
No 430
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=36.23 E-value=71 Score=29.56 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=24.9
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHH
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~ 122 (184)
+-..+++||+|.+-... .+.+ +..+ .+.++++.++|-++...
T Consensus 109 ~~~IL~IDEIh~Ln~~q-QdaL---L~~l-E~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ-QDAL---LPWV-ENGTITLIGATTENPYF 150 (725)
T ss_pred CceEEEEeChhhCCHHH-HHHH---HHHh-cCceEEEEEecCCChHh
Confidence 45689999999874322 2222 2222 23677888887554433
No 431
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=36.21 E-value=80 Score=25.90 Aligned_cols=40 Identities=8% Similarity=0.075 Sum_probs=26.8
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
...-+.+|+|+||.|-... ...+..+++.-| ++.+++.+.
T Consensus 122 ~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEEC
Confidence 3577999999999985543 444555566656 666666544
No 432
>PRK07952 DNA replication protein DnaC; Validated
Probab=36.20 E-value=2.1e+02 Score=22.49 Aligned_cols=106 Identities=21% Similarity=0.338 Sum_probs=56.5
Q ss_pred HHHHHHHhhhcCC-CceEEEEECCcchH-H-----HHHHHHHcCCcEeeechHHHHHHHHhc---CCc-------cCCCc
Q 029993 15 IYHVAQPFISTLP-DVKSMLLVGGVEVK-A-----DVKKIEEEGANLLIGTPGRLYDIMERM---DVL-------DFRNL 77 (184)
Q Consensus 15 i~~~~~~l~~~~~-~~~~~~~~~~~~~~-~-----~~~~l~~~~~~IlV~TP~~l~~~~~~~---~~~-------~~~~l 77 (184)
....+.+++..+. +.....++|+...+ . -...+...+..+++.|-..+...++.. ... .+.++
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~ 163 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNV 163 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccC
Confidence 3444555544331 23456677754321 1 122333457788888777776655431 111 26788
Q ss_pred eEEEechhhHhhccchHH-HHHHHHHhC-CCCceEEEEeeeCchH
Q 029993 78 VILVLDEADRLLDMGFQK-QISYIISRL-PKLRRTGLFSATQTEA 120 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~-~l~~i~~~l-~~~~q~i~~SAT~~~~ 120 (184)
.+||+||++......+.. .+..|+..- .....+++.|---+.+
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~ 208 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEE 208 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHH
Confidence 999999999876555554 344455542 3344556554443333
No 433
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=36.11 E-value=48 Score=27.41 Aligned_cols=40 Identities=8% Similarity=0.039 Sum_probs=24.2
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
...-+.+|+||||.|-... ...+...++.=|...-+++.|
T Consensus 104 ~~~~kv~iI~~a~~m~~~a-aNaLLK~LEEPp~~~~fiL~t 143 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRNA-ANALLKSLEEPSGDTVLLLIS 143 (328)
T ss_pred cCCCeEEEECChhhCCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 4578899999999986554 333333455444444444433
No 434
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=36.09 E-value=25 Score=26.53 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=34.3
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~ 125 (184)
..+-+++++||--.=++......+..+++.+.+....++++..-...+..++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~ 202 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVA 202 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 4566899999998888877778888888777543334555444444444433
No 435
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.06 E-value=55 Score=27.14 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=22.4
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEE
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~ 113 (184)
+.+-+++++||+|.+..... ..+...++..+..+.+++.
T Consensus 106 ~~~~kiviIDE~~~l~~~~~-~~ll~~le~~~~~~~~Il~ 144 (367)
T PRK14970 106 TGKYKIYIIDEVHMLSSAAF-NAFLKTLEEPPAHAIFILA 144 (367)
T ss_pred cCCcEEEEEeChhhcCHHHH-HHHHHHHhCCCCceEEEEE
Confidence 56678999999998754322 2222333433444455554
No 436
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=36.04 E-value=59 Score=30.07 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=24.0
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEE
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~ 113 (184)
..+-+.+|+||||.|-... ...+...++.-|....+|+.
T Consensus 116 ~g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifILa 154 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFILA 154 (725)
T ss_pred cCCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEEE
Confidence 3567899999999875443 33444445554544545544
No 437
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=35.82 E-value=26 Score=26.57 Aligned_cols=52 Identities=29% Similarity=0.363 Sum_probs=35.7
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~ 125 (184)
..+-+++++||--.-++......+..+++.+.+....++++..-...+..++
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~ 203 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLC 203 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhc
Confidence 4567899999998888887788888888777543445555555444444443
No 438
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.78 E-value=59 Score=28.46 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=22.1
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEE
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGL 112 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~ 112 (184)
..+-+.+|+||||.|....+ +.+...+..-|...-+++
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPRTIFIL 154 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEE
Confidence 35668999999998754433 334444444444333333
No 439
>PRK06921 hypothetical protein; Provisional
Probab=35.60 E-value=2.3e+02 Score=22.57 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=45.0
Q ss_pred ceEEEEECCcchHH--H----HHHHHHc-CCcEeeechHHHHHHHHhc-----CC-ccCCCceEEEechhhH-hhc----
Q 029993 29 VKSMLLVGGVEVKA--D----VKKIEEE-GANLLIGTPGRLYDIMERM-----DV-LDFRNLVILVLDEADR-LLD---- 90 (184)
Q Consensus 29 ~~~~~~~~~~~~~~--~----~~~l~~~-~~~IlV~TP~~l~~~~~~~-----~~-~~~~~l~~lVvDEaD~-l~~---- 90 (184)
.....++|..-.+. - ...+... +..++..|...+...+... .. -.+.++.+||+||++. +-+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~~ 196 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPRA 196 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCCCccC
Confidence 35567777543221 1 1222233 6777766665554444320 01 1256789999999954 111
Q ss_pred cch-HHHHHHHHHhCCC-CceEEEEeeeCchH
Q 029993 91 MGF-QKQISYIISRLPK-LRRTGLFSATQTEA 120 (184)
Q Consensus 91 ~~~-~~~l~~i~~~l~~-~~q~i~~SAT~~~~ 120 (184)
..| ...+..|++..-. ...+ ++|+.++++
T Consensus 197 t~~~~~~lf~iin~R~~~~k~t-Iitsn~~~~ 227 (266)
T PRK06921 197 TEWQIEQMYSVLNYRYLNHKPI-LISSELTID 227 (266)
T ss_pred CHHHHHHHHHHHHHHHHCCCCE-EEECCCCHH
Confidence 112 2345555554432 2344 445555443
No 440
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=35.59 E-value=3.7e+02 Score=26.08 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=25.3
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhC-CCCceEEEEeee
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSAT 116 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l-~~~~q~i~~SAT 116 (184)
+....+||||||-. ++. ..+..+++.. +..+++|+++-+
T Consensus 431 l~~~~vlIVDEASM-v~~---~~m~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 431 LTSRDVLVIDEAGM-VGT---RQLERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred cccCcEEEEECccc-CCH---HHHHHHHHhhhhCCCEEEEECCH
Confidence 55678999999974 332 2444555543 456788887655
No 441
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=35.56 E-value=28 Score=26.39 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=34.9
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEEL 124 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~ 124 (184)
..+-+++++||--.-+|......+..+++.+.+....++++..-...+..+
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~ 204 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETY 204 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 456689999999888888778888888887754344555555444444433
No 442
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=35.47 E-value=37 Score=31.12 Aligned_cols=102 Identities=11% Similarity=0.120 Sum_probs=51.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcC-CCceEEEEECCcchHHHHHHHHHcC--CcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTL-PDVKSMLLVGGVEVKADVKKIEEEG--ANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~--~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
.++.+|.+.-+..+++.+....... ++-.+....| ... .....++ .-|..++- .+.+..-=.+..
T Consensus 287 IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I----~i~f~nG~kstI~FaSa-------rntNsiRGqtfD 354 (738)
T PHA03368 287 IGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI----SFSFPDGSRSTIVFASS-------HNTNGIRGQDFN 354 (738)
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE----EEEecCCCccEEEEEec-------cCCCCccCCccc
Confidence 4677888888888888877765421 1211211111 111 0001112 24444422 110112112567
Q ss_pred EEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 79 ILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
++|+|||.-+-+..+...+ -.+.. .+++.|+.|.|-+
T Consensus 355 LLIVDEAqFIk~~al~~il-p~l~~--~n~k~I~ISS~Ns 391 (738)
T PHA03368 355 LLFVDEANFIRPDAVQTIM-GFLNQ--TNCKIIFVSSTNT 391 (738)
T ss_pred EEEEechhhCCHHHHHHHH-HHHhc--cCccEEEEecCCC
Confidence 9999999977543333322 22221 3789999998844
No 443
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=35.40 E-value=1.2e+02 Score=29.39 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=24.2
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCC-CCceEEEEeee
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSAT 116 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~-~~~q~i~~SAT 116 (184)
...+||+||+|.|... ..+.+..+++... ...++++...+
T Consensus 869 ~v~IIILDEID~L~kK-~QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 869 NVSILIIDEIDYLITK-TQKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred cceEEEeehHhhhCcc-HHHHHHHHHHHhhccCCeEEEEEec
Confidence 3568999999999764 3444555555322 23455554444
No 444
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.28 E-value=68 Score=29.08 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=34.9
Q ss_pred cCCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEcc
Q 029993 73 DFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRA 139 (184)
Q Consensus 73 ~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~ 139 (184)
.+.+-+.+|+||+|.|-... .+.+...++.-+...-+|+.+ + +...+..........+....
T Consensus 124 ~~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t-~---~~~kLl~TI~SRc~~vef~~ 185 (620)
T PRK14954 124 QKGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT-T---ELHKIPATIASRCQRFNFKR 185 (620)
T ss_pred hcCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe-C---ChhhhhHHHHhhceEEecCC
Confidence 35667899999999986443 334444455555555555544 2 22444444444455555543
No 445
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=35.09 E-value=32 Score=26.26 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=35.3
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~ 125 (184)
..+-+++++||--.-++......+..+++.+.+. ..++++..-...+..++
T Consensus 157 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~ 207 (227)
T cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVA 207 (227)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhC
Confidence 4556899999998888887888888888887655 55555444444444333
No 446
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=34.96 E-value=29 Score=26.81 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=36.7
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
..+-+.+++||-..-++......+..+++.+.+....++++..-...+..++.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 204 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVAS 204 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 45678999999998888888888888888775434455555554444444443
No 447
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=34.86 E-value=71 Score=25.81 Aligned_cols=56 Identities=30% Similarity=0.237 Sum_probs=42.2
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhC
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~ 129 (184)
++.-+++|+||=-.=++.-..+.++..+..++..--.|+||...=.+++.++...+
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~ll 201 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLL 201 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhh
Confidence 34556899999755555556788888888888777888888888778888877643
No 448
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=34.77 E-value=1.3e+02 Score=19.45 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhcCCCceEEEEEC-CcchHHHHHHHHHcCCcEeeechH
Q 029993 10 ELSAQIYHVAQPFISTLPDVKSMLLVG-GVEVKADVKKIEEEGANLLIGTPG 60 (184)
Q Consensus 10 eLa~Qi~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~IlV~TP~ 60 (184)
+...++.+.+.+..... .+.++.... .....+-...+...+++=++.-|-
T Consensus 17 ~~~~~~~~~l~~~~~~~-~v~~a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl 67 (101)
T cd03409 17 KDIEAQAHNLAESLPDF-PYYVGFQSGLGPDTEEAIRELAEEGYQRVVIVPL 67 (101)
T ss_pred HHHHHHHHHHHHHCCCC-CEEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeC
Confidence 33444444443332222 455555555 555666666666667777777774
No 449
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=34.76 E-value=27 Score=26.79 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=37.7
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
..+-+++++||--.-++......+..+++.+.+....++++..-...+..++.
T Consensus 129 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d 181 (223)
T TIGR03771 129 ATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCD 181 (223)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 56678999999999888888888888888775444556655554444444443
No 450
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=34.68 E-value=31 Score=26.23 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=33.9
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~ 125 (184)
+.+-+++++||.-.-++......+..+++.+.+....++++..-...+.+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~ 204 (214)
T PRK13543 153 LSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVR 204 (214)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhc
Confidence 4566799999988877777777777777766444445555555444444433
No 451
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.66 E-value=69 Score=27.98 Aligned_cols=31 Identities=13% Similarity=0.182 Sum_probs=19.1
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCC
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLP 105 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~ 105 (184)
+.+-+.+++||+|.|.... ...+...+...+
T Consensus 115 ~~~~kVvIIDE~h~Lt~~a-~~~LLk~LE~p~ 145 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTKEA-FNALLKTLEEPP 145 (472)
T ss_pred cCCeEEEEEEChHHhHHHH-HHHHHHHHHhCC
Confidence 4567899999999985432 233344444433
No 452
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=34.60 E-value=1.3e+02 Score=20.83 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=19.9
Q ss_pred EEEeccHHHHHHHHHHHHHhhhcCCCceEEE
Q 029993 3 MIISPTRELSAQIYHVAQPFISTLPDVKSML 33 (184)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~ 33 (184)
|.+-|.-+-+..+.+.+.+|.+.+ +-++..
T Consensus 30 l~ilp~g~as~~~a~~l~~LA~sI-Np~I~i 59 (131)
T PF14459_consen 30 LCILPSGEASSFQAQNLQSLARSI-NPRIEI 59 (131)
T ss_pred EEEeecchhHHHHHHHHHHHHHhc-CCCeEE
Confidence 567777777777777777777665 344433
No 453
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=34.45 E-value=1.4e+02 Score=28.30 Aligned_cols=71 Identities=14% Similarity=0.281 Sum_probs=51.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcC-CCceEEEEECCcchHHHHHHHHH--cCCc-EeeechHHHHHHHHhcCCccCCCc
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTL-PDVKSMLLVGGVEVKADVKKIEE--EGAN-LLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~-IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.||+.|-.+...+..+.+.+ +.. +++.+.-++|..+.++|.+.... ++.. ||++|. +.. -.+....+
T Consensus 262 ILvFLpG~~EI~~~~~~L~~--~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATN------IAE-TSLTI~gI 332 (845)
T COG1643 262 ILVFLPGQREIERTAEWLEK--AELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATN------IAE-TSLTIPGI 332 (845)
T ss_pred EEEECCcHHHHHHHHHHHHh--ccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEcc------ccc-cceeeCCe
Confidence 47888999988888888887 233 46889999999998888775532 2334 999998 333 45667777
Q ss_pred eEEE
Q 029993 78 VILV 81 (184)
Q Consensus 78 ~~lV 81 (184)
+++|
T Consensus 333 r~VI 336 (845)
T COG1643 333 RYVI 336 (845)
T ss_pred EEEe
Confidence 7775
No 454
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=34.20 E-value=1.1e+02 Score=18.33 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=33.0
Q ss_pred CceEEEEECCcchHHHHHH---HHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechh
Q 029993 28 DVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEA 85 (184)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~---l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEa 85 (184)
+.++..++|+...++.... ..+....|+|+|. .+. ..+++..+..+|+-+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~-----~~~--~Gi~~~~~~~vi~~~~ 64 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATD-----VAE--RGLDLPGVDLVIIYDL 64 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--CCcChhcCCEEEEeCC
Confidence 6788888887665443322 2235678888885 222 4677888888876655
No 455
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=34.14 E-value=34 Score=25.60 Aligned_cols=52 Identities=31% Similarity=0.295 Sum_probs=34.8
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc-hHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT-EAVEELS 125 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~-~~v~~~~ 125 (184)
..+-+++++||-..=++......+.++++.+.+....++++..-. ..+..++
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~ 179 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELF 179 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhc
Confidence 456789999999988888788888888887754344455544433 2444333
No 456
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=34.08 E-value=60 Score=30.53 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=28.2
Q ss_pred ceEEEechhhHhhccch---HHHHHHHHHhCCCCceEEEEeeeCchHHH
Q 029993 77 LVILVLDEADRLLDMGF---QKQISYIISRLPKLRRTGLFSATQTEAVE 122 (184)
Q Consensus 77 l~~lVvDEaD~l~~~~~---~~~l~~i~~~l~~~~q~i~~SAT~~~~v~ 122 (184)
-.++++||+|.+...+. ..+..++++..-..-.+.+..||=.++..
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR 315 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHH
Confidence 45999999999985321 22344455444344556667777666543
No 457
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=33.80 E-value=30 Score=26.50 Aligned_cols=53 Identities=21% Similarity=0.105 Sum_probs=37.4
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
..+-+++++||--.=++......+..+++.+.+....++++..-...+..++.
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d 201 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITD 201 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 45678999999998888878888888887775444456665555545555544
No 458
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=33.69 E-value=35 Score=25.76 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=34.6
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCC---CceEEEEeeeCchHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPK---LRRTGLFSATQTEAVE 122 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~---~~q~i~~SAT~~~~v~ 122 (184)
..+-+++++||...-++......+..++..+.+ ..++++++..-...+.
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~ 180 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLA 180 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccc
Confidence 367789999999998888777777776666532 3577888765554443
No 459
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=33.65 E-value=2.6e+02 Score=27.51 Aligned_cols=57 Identities=9% Similarity=0.192 Sum_probs=33.6
Q ss_pred EEEEeccHHHHHHHHHHHHHhhh-cCC---CceEEEEECCcchHHHHHHHHHcC--CcEeeec
Q 029993 2 GMIISPTRELSAQIYHVAQPFIS-TLP---DVKSMLLVGGVEVKADVKKIEEEG--ANLLIGT 58 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~-~~~---~~~~~~~~~~~~~~~~~~~l~~~~--~~IlV~T 58 (184)
++|+|.|++=|..+.+.+.+... .+| +-.+..++|+.....+.-.-++.+ |.|+|++
T Consensus 701 tiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~~~~li~~Fk~~~~p~IlVsv 763 (1123)
T PRK11448 701 TLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDKPDQLIRRFKNERLPNIVVTV 763 (1123)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccchHHHHHHHhCCCCCeEEEEe
Confidence 68999999999998888777432 122 234555777654333322222222 4566655
No 460
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=33.61 E-value=33 Score=26.61 Aligned_cols=53 Identities=23% Similarity=0.197 Sum_probs=38.4
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~ 127 (184)
..+-+++++||--.-++......+.++++.+.+. ..++++..-...+..++..
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQQAARISDR 212 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHHHHHHhCCE
Confidence 4567899999999888888888888888887654 4666665555555555543
No 461
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=33.48 E-value=1.5e+02 Score=21.76 Aligned_cols=58 Identities=17% Similarity=0.088 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechh
Q 029993 9 RELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEA 85 (184)
Q Consensus 9 reLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEa 85 (184)
+++|..+.+.+.+....- +.-+..+.||+....-...+.+ ... .. +++++.++-.||-
T Consensus 2 ~~~a~~i~~~i~~~~~~~-~~~~i~lsgGsTp~~~y~~L~~---------------~~~--~~-~w~~v~~f~~DEr 59 (169)
T cd00458 2 KEALKFIEDKXEKLLEEK-DDMVIGLGTGSTPAYFYKLLGE---------------KLK--RG-EISDIVGFPTDER 59 (169)
T ss_pred hHHHHHHHHHHHHHHHhC-CCEEEEECCCccHHHHHHHHHh---------------hhh--hC-CccceEEEECccc
Confidence 567777777777754433 3344555565544333332211 111 11 6788888889983
No 462
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.38 E-value=73 Score=28.57 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=22.9
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEE
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~ 113 (184)
+.+-+.+|+||+|.|-... .+.+...++.-+...-+|+.
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCeEEEEE
Confidence 4567899999999875433 23334444444444444443
No 463
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=33.18 E-value=55 Score=28.11 Aligned_cols=27 Identities=15% Similarity=0.366 Sum_probs=22.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLP 27 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~ 27 (184)
+++.++++.+|+.++...+.+.....|
T Consensus 251 ~~vLvt~s~~la~~V~~~v~~~l~~l~ 277 (412)
T PF00815_consen 251 QAVLVTTSEELAEAVEAEVERQLEELP 277 (412)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHTT-T
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHhCC
Confidence 478999999999999999999877664
No 464
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=33.11 E-value=29 Score=28.20 Aligned_cols=54 Identities=24% Similarity=0.193 Sum_probs=41.9
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~ 127 (184)
..+-+++++||--.=+|......+..+++.+.+....+++|.....++..++..
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~ 207 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDR 207 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 456789999999888888788888888888865556777777777777666654
No 465
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=33.08 E-value=31 Score=26.66 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=37.0
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
..+-+++++||-..-++......+..+++.+.+....++++..-...+..++.
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d 209 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTAS 209 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 45678999999998888877888888888775444456665555555444444
No 466
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=33.06 E-value=2.2e+02 Score=22.25 Aligned_cols=92 Identities=20% Similarity=0.166 Sum_probs=59.3
Q ss_pred HHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHh--cCCccCCCceEEEechhhHhhccchH
Q 029993 17 HVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER--MDVLDFRNLVILVLDEADRLLDMGFQ 94 (184)
Q Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~--~~~~~~~~l~~lVvDEaD~l~~~~~~ 94 (184)
++...+.+.. +.+|..-.|....=.+ . ..++.|||.|+.+.-...+-. .+.++.++++.+-+-|+-.+...+..
T Consensus 37 ~vA~~~~ekt-g~kVnvt~GPq~tW~~--k-AkknADilfgaseqsalaia~~~~~~fs~~~i~ply~R~aiIlvkkgNP 112 (252)
T COG4588 37 DVAKKYEEKT-GIKVNVTAGPQATWNE--K-AKKNADILFGASEQSALAIAEDHKDSFSEKNIQPLYLRPAIILVKKGNP 112 (252)
T ss_pred HHHHHHHHHh-CeEEEEecCCcchhhh--h-hhccCceeecccHHHHHHHHHhccccccccccceeeeeceEEEecCCCc
Confidence 3444444444 6777776665542111 1 246899999999876655543 23477888998888888877777777
Q ss_pred HHHHHHHHhCCCCceEEE
Q 029993 95 KQISYIISRLPKLRRTGL 112 (184)
Q Consensus 95 ~~l~~i~~~l~~~~q~i~ 112 (184)
..++.+-..+.+...++.
T Consensus 113 knIk~~eDll~~gi~ivV 130 (252)
T COG4588 113 KNIKGFEDLLKPGIGIVV 130 (252)
T ss_pred cccccHHHHhcCCceEEE
Confidence 777776666655544443
No 467
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.99 E-value=27 Score=25.53 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=31.4
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
..+-+++++||--.-++......+.++++.+.++...++++..
T Consensus 111 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th 153 (173)
T cd03230 111 LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSH 153 (173)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 4566899999999988888888888888887544334444333
No 468
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=32.84 E-value=27 Score=28.96 Aligned_cols=54 Identities=24% Similarity=0.210 Sum_probs=41.3
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~ 127 (184)
..+-+++++||--.=+|......+..+++.+.+.-..+++|.....++..++..
T Consensus 188 ~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~ 241 (340)
T PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDR 241 (340)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 456789999999888887788888888888765455777777777676666554
No 469
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=32.81 E-value=31 Score=26.48 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=36.4
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
..+-+++++||--.-++......+..+++.+.+....++++..-...+..++.
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d 211 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLAD 211 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 45668999999998888878888888888775433456655554444444433
No 470
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=32.34 E-value=1.5e+02 Score=27.64 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=35.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHH-HHHHHHHcCCcEeeech
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKA-DVKKIEEEGANLLIGTP 59 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~IlV~TP 59 (184)
+||.+.|.+-+..+.+.+.+- ++....+.++....+ ....-..+...|+|+|-
T Consensus 408 vLV~t~si~~se~ls~~L~~~-----gi~~~~Lna~q~~rEa~ii~~ag~~g~VtIATn 461 (745)
T TIGR00963 408 VLVGTTSVEKSELLSNLLKER-----GIPHNVLNAKNHEREAEIIAQAGRKGAVTIATN 461 (745)
T ss_pred EEEEeCcHHHHHHHHHHHHHc-----CCCeEEeeCChHHHHHHHHHhcCCCceEEEEec
Confidence 789999999998888877774 567777777633211 12222234578888885
No 471
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=32.21 E-value=37 Score=25.85 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=37.6
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
..+-+++++||--.=++......+..++..+.+....++++..-...+..++.
T Consensus 140 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d 192 (223)
T TIGR03740 140 LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLAD 192 (223)
T ss_pred hcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcC
Confidence 45668999999998888888888888888775444456665555555445544
No 472
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.15 E-value=25 Score=27.04 Aligned_cols=53 Identities=26% Similarity=0.326 Sum_probs=36.7
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCC-ceEEEEeeeCchHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~-~q~i~~SAT~~~~v~~~~~ 126 (184)
+.+-+++++||...=++......+..+++.+.+. ...++++..-...+..++.
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d 199 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSD 199 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 4566899999999888888888888888877542 3455555555544444443
No 473
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=32.13 E-value=53 Score=31.35 Aligned_cols=62 Identities=23% Similarity=0.223 Sum_probs=35.6
Q ss_pred cEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhc-cchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 53 NLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 53 ~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~-~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
-|+.+|-+-++.++.. + +..+.++++||.|..-- ..|.-.+.+=+...-++-..++.|||+.
T Consensus 474 ~i~fctvgvllr~~e~-g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatId 536 (1282)
T KOG0921|consen 474 SIMFCTVGVLLRMMEN-G---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATID 536 (1282)
T ss_pred ceeeeccchhhhhhhh-c---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccc
Confidence 3566677777777665 3 45677899999986422 1243333333333334445556666665
No 474
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=32.12 E-value=30 Score=26.20 Aligned_cols=49 Identities=24% Similarity=0.255 Sum_probs=33.6
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCC-ceEEEEeeeCchHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVE 122 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~-~q~i~~SAT~~~~v~ 122 (184)
..+-+++++||...-++......+..+++.+.+. ...+++++.-...+.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~ 193 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDAR 193 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 4566899999999988888888888888877542 344454444443433
No 475
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=32.08 E-value=42 Score=25.56 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=34.0
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
+.+-+++++||--.-++......+..+++.+......++++..-...+..++.
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d 217 (224)
T TIGR02324 165 IADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVAD 217 (224)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc
Confidence 45678999999988888777777877777764433345544443433334443
No 476
>PHA02533 17 large terminase protein; Provisional
Probab=31.89 E-value=1.6e+02 Score=26.21 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=52.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+++++|+++-|..+++.++.+....|.+.-..+..... ..-. ..+|..|-+.|-+. +...=.+..+++
T Consensus 107 v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~~i~~~~~---~~I~-l~NGS~I~~lss~~--------~t~rG~~~~~li 174 (534)
T PHA02533 107 VGILAHKASMAAEVLDRTKQAIELLPDFLQPGIVEWNK---GSIE-LENGSKIGAYASSP--------DAVRGNSFAMIY 174 (534)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhCHHHhhcceeecCc---cEEE-eCCCCEEEEEeCCC--------CccCCCCCceEE
Confidence 67899999999999988887766655432111111100 0001 13455665544321 111112456899
Q ss_pred echhhHhhccchHHHHHHHHHhCCC--CceEEEEeeeC
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPK--LRRTGLFSATQ 117 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~--~~q~i~~SAT~ 117 (184)
+||++.+-+ +.+....+...+.. ..+.+++|..-
T Consensus 175 iDE~a~~~~--~~e~~~ai~p~lasg~~~r~iiiSTp~ 210 (534)
T PHA02533 175 IDECAFIPN--FIDFWLAIQPVISSGRSSKIIITSTPN 210 (534)
T ss_pred EeccccCCC--HHHHHHHHHHHHHcCCCceEEEEECCC
Confidence 999997633 23333333333322 23555555553
No 477
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=31.80 E-value=56 Score=26.49 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=25.7
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
..+-+++|+|+||.|-... .+.+...++.-|..+-+++.+
T Consensus 91 ~~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEEEEe
Confidence 5678999999999985443 344444555545555555544
No 478
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=31.80 E-value=1.4e+02 Score=28.25 Aligned_cols=53 Identities=9% Similarity=0.053 Sum_probs=35.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHH-HHHHHHHcCCcEeeech
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKA-DVKKIEEEGANLLIGTP 59 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~IlV~TP 59 (184)
+||.+.|.+-+..+...+.+. +++...+.+.....+ ....-..++..|+|+|-
T Consensus 433 VLIft~Si~~se~Ls~~L~~~-----gi~~~vLnakq~eREa~Iia~Ag~~g~VtIATN 486 (830)
T PRK12904 433 VLVGTVSIEKSELLSKLLKKA-----GIPHNVLNAKNHEREAEIIAQAGRPGAVTIATN 486 (830)
T ss_pred EEEEeCcHHHHHHHHHHHHHC-----CCceEeccCchHHHHHHHHHhcCCCceEEEecc
Confidence 799999999999888877764 577777777533211 11111234678888885
No 479
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.54 E-value=34 Score=25.79 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=36.0
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCC-ceEEEEeeeCchHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELS 125 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~-~q~i~~SAT~~~~v~~~~ 125 (184)
..+-+++++||--.-++......+.++++.+.++ ...++++..-...+..++
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~ 196 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLA 196 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhh
Confidence 4567899999999888888888888888877543 345555555444444443
No 480
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.52 E-value=49 Score=25.94 Aligned_cols=52 Identities=17% Similarity=0.106 Sum_probs=37.8
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
+.+-+++++||.-.-++......+..+++.+.+. ..++++..-.+.+..++.
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~tiii~tH~~~~i~~~~d 217 (259)
T PRK14260 166 AIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE-LTIAIVTHNMQQATRVSD 217 (259)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcC
Confidence 4566899999999888887888888888887654 566666665555555444
No 481
>PRK10865 protein disaggregation chaperone; Provisional
Probab=31.37 E-value=60 Score=30.61 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=27.6
Q ss_pred eEEEechhhHhhccc---hHHHHHHHHHhCCCCceEEEEeeeCchHHH
Q 029993 78 VILVLDEADRLLDMG---FQKQISYIISRLPKLRRTGLFSATQTEAVE 122 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~---~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~ 122 (184)
..+++||+|.+.+.+ -..+..++++..-..-.+.+..||-.++..
T Consensus 273 ~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 273 VILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 320 (857)
T ss_pred eEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHH
Confidence 489999999998542 123344555444344566666777666643
No 482
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=31.33 E-value=55 Score=27.07 Aligned_cols=40 Identities=10% Similarity=0.025 Sum_probs=24.4
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
-..-|.+|+|+||.|-... ...+...++.=|...-+++.|
T Consensus 105 ~g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred cCCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 4567999999999986553 333334444434444444443
No 483
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=31.19 E-value=76 Score=25.18 Aligned_cols=64 Identities=13% Similarity=0.055 Sum_probs=39.0
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHH--HHHHHhCCCCeEEEEc
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVE--ELSKAGLRNPVRIEVR 138 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~--~~~~~~~~~~~~i~~~ 138 (184)
|..=+.+|+++++.+.+....+.+..+++..+....+++++..++.... ...+.. .....+...
T Consensus 44 f~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~-~~~~~i~~~ 109 (302)
T TIGR01128 44 FSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKAL-KNAQIVECK 109 (302)
T ss_pred ccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHh-cCeeEEEec
Confidence 3445799999999876444456777777777777777776655544321 223332 345555543
No 484
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=31.17 E-value=69 Score=21.15 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=15.7
Q ss_pred ceEEEechhhHhhccchHHHH
Q 029993 77 LVILVLDEADRLLDMGFQKQI 97 (184)
Q Consensus 77 l~~lVvDEaD~l~~~~~~~~l 97 (184)
...+++||++.+.........
T Consensus 79 ~~viiiDei~~~~~~~~~~~~ 99 (148)
T smart00382 79 PDVLILDEITSLLDAEQEALL 99 (148)
T ss_pred CCEEEEECCcccCCHHHHHHH
Confidence 579999999998776544433
No 485
>PRK09087 hypothetical protein; Validated
Probab=31.16 E-value=2.5e+02 Score=21.68 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=51.2
Q ss_pred eEEEEECCcc-hHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhccchHHHHHHHHHhCCC-C
Q 029993 30 KSMLLVGGVE-VKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPK-L 107 (184)
Q Consensus 30 ~~~~~~~~~~-~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~-~ 107 (184)
....++|... .+.....++........-+++.+...+-. . +.+ ..+++|++|.+- .-...+-++++.+.. .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~-~---~~~-~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g 117 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAAN-A---AAE-GPVLIEDIDAGG--FDETGLFHLINSVRQAG 117 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHH-h---hhc-CeEEEECCCCCC--CCHHHHHHHHHHHHhCC
Confidence 4467777543 33333333333344444455432221111 0 111 489999999762 235567777766655 4
Q ss_pred ceEEEEeeeCchHHH----HHHHHhCCCCeEEEEccC
Q 029993 108 RRTGLFSATQTEAVE----ELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 108 ~q~i~~SAT~~~~v~----~~~~~~~~~~~~i~~~~~ 140 (184)
+++++.|.+-|+... ++.++ +.....+.+..-
T Consensus 118 ~~ilits~~~p~~~~~~~~dL~SR-l~~gl~~~l~~p 153 (226)
T PRK09087 118 TSLLMTSRLWPSSWNVKLPDLKSR-LKAATVVEIGEP 153 (226)
T ss_pred CeEEEECCCChHHhccccccHHHH-HhCCceeecCCC
Confidence 555555555444322 23322 445566666554
No 486
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=30.87 E-value=54 Score=29.27 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=24.3
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
..+-+++|+||+|.|....+. .+...++.-|....+|+ .+|-+
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~n-aLLKtLEepp~~~ifIl-att~~ 159 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFN-ALLKTLEEPPAHVIFIL-ATTEP 159 (559)
T ss_pred cCCeEEEEEECcccCCHHHHH-HHHHHhcCCCCCeEEEE-EeCCh
Confidence 456789999999988554333 33334444444334444 34444
No 487
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.73 E-value=68 Score=28.26 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.3
Q ss_pred CCCceEEEechhhHhh
Q 029993 74 FRNLVILVLDEADRLL 89 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~ 89 (184)
+..-+++|+||+|.+-
T Consensus 114 ~~~~kVVIIDEad~ls 129 (504)
T PRK14963 114 RGGRKVYILDEAHMMS 129 (504)
T ss_pred cCCCeEEEEECccccC
Confidence 4677899999999874
No 488
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=30.69 E-value=43 Score=26.18 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=39.0
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~ 127 (184)
..+-+++++||--.=++......+..+++.+......++++..-...+.+++..
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~ 207 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDH 207 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCE
Confidence 456689999999988888788888888877754445666666666666665553
No 489
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=30.69 E-value=36 Score=25.70 Aligned_cols=53 Identities=23% Similarity=0.142 Sum_probs=35.2
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
..+-+++++||--.=++......+..+++.+.+....++++..-...+..++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d 200 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFD 200 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 45668999999988888777778888777765433455555554444444433
No 490
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.57 E-value=31 Score=26.01 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=35.3
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCC-ceEEEEeeeCchHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELS 125 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~-~q~i~~SAT~~~~v~~~~ 125 (184)
..+-+++++||--.-+|......+..+++.+.+. ...++++..-...+..++
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~ 198 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALA 198 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhc
Confidence 4566899999998888887788888888776432 345555555444444443
No 491
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=30.54 E-value=82 Score=20.57 Aligned_cols=34 Identities=21% Similarity=0.572 Sum_probs=20.4
Q ss_pred CCcEeeechHHHHHHHHhcCCccCCCceEEEechhh
Q 029993 51 GANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEAD 86 (184)
Q Consensus 51 ~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD 86 (184)
.|||+..-|+ +.+++.. ..+..++++.-++||.-
T Consensus 27 ePDivL~G~e-f~e~~~~-~~l~~~~lkvy~i~ELg 60 (85)
T PF08967_consen 27 EPDIVLVGPE-FYEFLSE-EVLEVSGLKVYVIEELG 60 (85)
T ss_dssp ---EEEE-HH-HHHHHHH----EETTEEEEE-GGGT
T ss_pred CCCEEEEcHH-HHHHHHH-HHHHhhCceEEEHHhcC
Confidence 5899999995 4555555 66788999999999963
No 492
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.53 E-value=38 Score=26.28 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=36.6
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
..+-+.+++||.-.=++......+..+++.+.+. ..++++..-...+..++.
T Consensus 161 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sh~~~~~~~~~d 212 (249)
T PRK14253 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKKN-YTIVIVTHSMQQARRISD 212 (249)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-CeEEEEecCHHHHHHhCC
Confidence 4566899999999888887888888888888654 455555554444444443
No 493
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=30.44 E-value=31 Score=26.53 Aligned_cols=53 Identities=21% Similarity=0.107 Sum_probs=37.5
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCC-ceEEEEeeeCchHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~-~q~i~~SAT~~~~v~~~~~ 126 (184)
..+-+++++||--.-++......+..++..+.++ ...++++..-...+..++.
T Consensus 130 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d 183 (230)
T TIGR01184 130 SIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSD 183 (230)
T ss_pred HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 4567899999999888888888888888776442 3456666655555554444
No 494
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=30.29 E-value=42 Score=25.40 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=35.9
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHH
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
..+-+++++||--.=++......+..+++.+......++++..-...+..++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 200 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIAD 200 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcc
Confidence 45678999999988888877888888887775433455555544444444443
No 495
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=30.23 E-value=45 Score=26.58 Aligned_cols=64 Identities=27% Similarity=0.301 Sum_probs=42.4
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCce--EEEEeeeCchHHHHHHHH--hCCCCeEEEEcc
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRR--TGLFSATQTEAVEELSKA--GLRNPVRIEVRA 139 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q--~i~~SAT~~~~v~~~~~~--~~~~~~~i~~~~ 139 (184)
-+-+++|+||.=..+|..-...+.+++..+.+.++ +++.|--+. -+..++.. .|.+-..++...
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeec
Confidence 35679999999999999889999999999988886 444443332 23444444 233444444333
No 496
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.20 E-value=71 Score=28.90 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=26.5
Q ss_pred cCCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 73 DFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 73 ~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
.+..-+.+|+||+|.|-.. -.+.+...++.-|..+-+|+.+
T Consensus 118 ~~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred ccCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 3567789999999998543 3445555666655555555543
No 497
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=30.10 E-value=63 Score=26.52 Aligned_cols=14 Identities=50% Similarity=0.719 Sum_probs=11.4
Q ss_pred ceEEEechhhHhhc
Q 029993 77 LVILVLDEADRLLD 90 (184)
Q Consensus 77 l~~lVvDEaD~l~~ 90 (184)
-..+|+||+|.+..
T Consensus 130 ~~vlvIDE~d~L~~ 143 (365)
T TIGR02928 130 SLIIVLDEIDYLVG 143 (365)
T ss_pred eEEEEECchhhhcc
Confidence 34789999999973
No 498
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=30.10 E-value=60 Score=29.89 Aligned_cols=40 Identities=25% Similarity=0.303 Sum_probs=24.2
Q ss_pred cCCcEeeechHHHHHHHHh-cCCccCCCceEEEechhhHhhc
Q 029993 50 EGANLLIGTPGRLYDIMER-MDVLDFRNLVILVLDEADRLLD 90 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~-~~~~~~~~l~~lVvDEaD~l~~ 90 (184)
..+++++---..|+.--.. .-.+++++ ..+|+||||.+++
T Consensus 322 p~aqlV~LPYQ~LL~~stR~slgI~Lkd-sIvIiDEAHNlid 362 (821)
T KOG1133|consen 322 PQAQLVTLPYQLLLHESTRKSLGISLKD-SIVIIDEAHNLID 362 (821)
T ss_pred ccccEEeccHHHHHhHHHHHhcCccccc-cEEEEechhHHHH
Confidence 3467766655555443333 12334433 4889999999987
No 499
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=30.08 E-value=73 Score=22.76 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=18.7
Q ss_pred HHHHHHcCCcEeeechHHHHHHHH
Q 029993 44 VKKIEEEGANLLIGTPGRLYDIME 67 (184)
Q Consensus 44 ~~~l~~~~~~IlV~TP~~l~~~~~ 67 (184)
...+.+.=|.|.|||+++|..++.
T Consensus 70 Y~~ll~~LP~vFVG~~~rL~~iV~ 93 (131)
T TIGR01615 70 YKRLLESLPEVFVGTTERLRQLVR 93 (131)
T ss_pred HHHHHHhCCcceECCHHHHHHHHH
Confidence 334455679999999999988875
No 500
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=30.04 E-value=84 Score=29.28 Aligned_cols=49 Identities=18% Similarity=0.378 Sum_probs=32.6
Q ss_pred CcEeee-chHHHHHHHHhcCCccCCCceEEEechhhHhhccchHHHHHHHHHhC
Q 029993 52 ANLLIG-TPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRL 104 (184)
Q Consensus 52 ~~IlV~-TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l 104 (184)
.+-.|| -||++.+.++..+.-|+ .+.+||+|.+-....++--..+++-+
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP----liLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP----LILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc----eEEeehhhhhCCCCCCChHHHHHHhc
Confidence 344554 59999999987555454 78899999987433444444455544
Done!