Query 029993
Match_columns 184
No_of_seqs 128 out of 1461
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 10:44:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 3.3E-28 1.1E-32 189.8 17.7 137 1-140 104-240 (242)
2 3fmo_B ATP-dependent RNA helic 100.0 2.7E-28 9.2E-33 196.5 13.8 135 1-139 164-299 (300)
3 1wrb_A DJVLGB; RNA helicase, D 100.0 2E-27 6.8E-32 186.3 16.9 148 1-166 102-253 (253)
4 2db3_A ATP-dependent RNA helic 99.9 4.5E-27 1.5E-31 197.8 16.7 153 1-171 131-285 (434)
5 3bor_A Human initiation factor 99.9 1E-26 3.5E-31 180.9 15.1 137 1-139 100-236 (237)
6 3iuy_A Probable ATP-dependent 99.9 1.7E-26 5.7E-31 178.3 16.0 133 1-137 96-228 (228)
7 3ber_A Probable ATP-dependent 99.9 3.1E-26 1E-30 179.8 17.6 136 1-138 113-248 (249)
8 2oxc_A Probable ATP-dependent 99.9 1.8E-26 6.2E-31 178.6 15.3 135 1-138 94-229 (230)
9 1vec_A ATP-dependent RNA helic 99.9 6.2E-26 2.1E-30 172.2 16.9 133 1-135 73-205 (206)
10 1t6n_A Probable ATP-dependent 99.9 4.3E-26 1.5E-30 174.9 16.1 136 1-137 84-220 (220)
11 2pl3_A Probable ATP-dependent 99.9 6.8E-26 2.3E-30 175.7 17.3 137 1-140 99-235 (236)
12 3ly5_A ATP-dependent RNA helic 99.9 9.9E-26 3.4E-30 178.1 17.2 131 1-133 128-258 (262)
13 1q0u_A Bstdead; DEAD protein, 99.9 3.8E-26 1.3E-30 175.4 13.4 138 1-140 74-214 (219)
14 2gxq_A Heat resistant RNA depe 99.9 3.6E-25 1.2E-29 167.9 16.4 133 1-138 74-206 (207)
15 1qde_A EIF4A, translation init 99.9 3.7E-25 1.3E-29 170.1 14.7 136 1-140 84-219 (224)
16 3dkp_A Probable ATP-dependent 99.9 2.8E-25 9.6E-30 173.1 11.3 139 1-140 100-243 (245)
17 2i4i_A ATP-dependent RNA helic 99.9 8.2E-24 2.8E-28 175.5 18.0 152 2-171 104-259 (417)
18 2j0s_A ATP-dependent RNA helic 99.9 1.1E-23 3.8E-28 174.7 16.9 153 1-171 107-259 (410)
19 3eiq_A Eukaryotic initiation f 99.9 3E-23 1E-27 171.8 16.1 154 1-171 110-263 (414)
20 1xti_A Probable ATP-dependent 99.9 1.1E-22 3.7E-27 167.3 17.7 156 1-171 78-234 (391)
21 3fmp_B ATP-dependent RNA helic 99.9 2.2E-23 7.4E-28 176.9 13.3 152 1-171 164-316 (479)
22 1fuu_A Yeast initiation factor 99.9 7.4E-22 2.5E-26 162.3 16.8 136 1-140 91-226 (394)
23 3sqw_A ATP-dependent RNA helic 99.9 7.3E-22 2.5E-26 171.4 15.0 160 1-171 97-266 (579)
24 3fht_A ATP-dependent RNA helic 99.9 1.2E-21 4.1E-26 161.9 15.1 152 1-171 97-249 (412)
25 3i5x_A ATP-dependent RNA helic 99.9 1.5E-21 5.2E-26 168.4 15.2 160 1-171 148-317 (563)
26 1s2m_A Putative ATP-dependent 99.9 5.3E-21 1.8E-25 158.0 16.6 152 1-171 91-242 (400)
27 2z0m_A 337AA long hypothetical 99.9 3E-20 1E-24 149.5 18.6 132 1-136 58-189 (337)
28 1hv8_A Putative ATP-dependent 99.9 2E-20 6.9E-25 152.1 17.3 135 1-139 76-210 (367)
29 3pey_A ATP-dependent RNA helic 99.8 2.8E-20 9.4E-25 152.6 16.2 149 1-171 77-226 (395)
30 3oiy_A Reverse gyrase helicase 99.8 4.7E-20 1.6E-24 153.5 8.2 146 1-170 66-239 (414)
31 3fho_A ATP-dependent RNA helic 99.8 7.9E-19 2.7E-23 150.3 15.5 149 1-171 191-340 (508)
32 4ddu_A Reverse gyrase; topoiso 99.8 1.1E-19 3.8E-24 167.6 9.6 147 1-171 123-297 (1104)
33 3l9o_A ATP-dependent RNA helic 99.8 7.7E-18 2.6E-22 155.4 15.5 126 1-140 229-356 (1108)
34 1gku_B Reverse gyrase, TOP-RG; 99.8 1.6E-19 5.6E-24 166.0 4.1 141 1-167 101-259 (1054)
35 1tf5_A Preprotein translocase 99.7 4.1E-18 1.4E-22 151.5 10.6 116 1-120 126-289 (844)
36 2fsf_A Preprotein translocase 99.7 4.9E-18 1.7E-22 150.8 9.7 102 1-106 117-240 (853)
37 2xgj_A ATP-dependent RNA helic 99.7 1.7E-16 5.8E-21 145.4 17.7 125 1-140 131-258 (1010)
38 1nkt_A Preprotein translocase 99.7 3.1E-17 1E-21 146.2 12.0 116 1-120 154-317 (922)
39 3llm_A ATP-dependent RNA helic 99.7 8.7E-17 3E-21 124.6 11.7 119 2-133 112-232 (235)
40 3tbk_A RIG-I helicase domain; 99.7 1.3E-16 4.3E-21 136.3 11.0 116 1-119 54-176 (555)
41 4a2p_A RIG-I, retinoic acid in 99.7 1.3E-16 4.5E-21 136.5 11.0 115 1-118 57-177 (556)
42 4a4z_A Antiviral helicase SKI2 99.7 5E-16 1.7E-20 142.2 11.9 115 2-129 85-199 (997)
43 4a2q_A RIG-I, retinoic acid in 99.6 2.2E-15 7.5E-20 135.2 13.7 115 1-118 298-418 (797)
44 3b6e_A Interferon-induced heli 99.6 4.4E-16 1.5E-20 118.0 7.9 113 1-116 84-216 (216)
45 2ykg_A Probable ATP-dependent 99.6 2.3E-15 7.7E-20 132.7 13.6 114 2-118 64-184 (696)
46 1wp9_A ATP-dependent RNA helic 99.6 5.6E-15 1.9E-19 123.2 12.8 124 1-128 54-180 (494)
47 2zj8_A DNA helicase, putative 99.6 1.6E-15 5.5E-20 134.6 10.0 119 2-128 71-189 (720)
48 2p6r_A Afuhel308 helicase; pro 99.6 2.6E-15 8.7E-20 133.0 10.8 121 1-129 70-193 (702)
49 3o8b_A HCV NS3 protease/helica 99.6 6.2E-15 2.1E-19 129.3 11.4 103 1-120 259-363 (666)
50 2va8_A SSO2462, SKI2-type heli 99.6 5.4E-15 1.8E-19 131.0 10.1 119 2-129 78-196 (715)
51 4a2w_A RIG-I, retinoic acid in 99.6 1.1E-14 3.7E-19 132.8 12.2 114 2-118 299-418 (936)
52 2v1x_A ATP-dependent DNA helic 99.6 1.1E-14 3.9E-19 126.7 11.0 130 2-136 87-229 (591)
53 4f92_B U5 small nuclear ribonu 99.6 2.4E-14 8.1E-19 136.8 14.1 124 2-132 975-1107(1724)
54 2eyq_A TRCF, transcription-rep 99.6 2.5E-14 8.6E-19 132.6 12.8 125 1-137 654-781 (1151)
55 4f92_B U5 small nuclear ribonu 99.5 2.1E-14 7.1E-19 137.2 11.0 123 2-131 137-267 (1724)
56 1rif_A DAR protein, DNA helica 99.5 3.5E-15 1.2E-19 118.4 4.3 107 2-121 160-266 (282)
57 1gm5_A RECG; helicase, replica 99.5 3.1E-14 1.1E-18 127.2 10.2 114 1-126 419-535 (780)
58 4gl2_A Interferon-induced heli 99.5 2.3E-14 7.9E-19 126.3 5.6 114 2-119 59-193 (699)
59 1oyw_A RECQ helicase, ATP-depe 99.5 2.4E-13 8.3E-18 116.8 10.8 127 2-135 68-204 (523)
60 2oca_A DAR protein, ATP-depend 99.5 5E-14 1.7E-18 120.0 6.0 108 1-121 159-266 (510)
61 2ipc_A Preprotein translocase 99.5 2.4E-13 8.3E-18 121.4 10.4 86 1-90 122-216 (997)
62 2fwr_A DNA repair protein RAD2 99.3 6.9E-12 2.4E-16 105.8 8.9 94 1-118 135-229 (472)
63 2jlq_A Serine protease subunit 99.2 9.5E-12 3.3E-16 105.0 6.7 119 1-138 50-169 (451)
64 1yks_A Genome polyprotein [con 99.2 6.8E-13 2.3E-17 111.7 -0.6 102 1-126 39-149 (440)
65 2whx_A Serine protease/ntpase/ 99.2 1E-11 3.6E-16 108.6 6.2 120 1-139 217-337 (618)
66 3h1t_A Type I site-specific re 99.2 5.9E-12 2E-16 109.2 4.4 104 1-120 237-344 (590)
67 2fz4_A DNA repair protein RAD2 99.2 6.4E-11 2.2E-15 91.8 9.7 96 1-120 135-231 (237)
68 2w00_A HSDR, R.ECOR124I; ATP-b 99.2 2.5E-11 8.4E-16 111.4 8.5 107 2-119 333-440 (1038)
69 2v6i_A RNA helicase; membrane, 99.2 9.2E-11 3.2E-15 98.4 9.5 107 1-123 33-140 (431)
70 2xau_A PRE-mRNA-splicing facto 99.1 2.6E-10 8.8E-15 102.1 11.8 124 2-138 143-268 (773)
71 3rc3_A ATP-dependent RNA helic 99.1 4.7E-11 1.6E-15 105.4 5.4 115 2-135 182-297 (677)
72 2z83_A Helicase/nucleoside tri 99.1 8.8E-11 3E-15 99.3 5.7 105 1-125 52-161 (459)
73 2wv9_A Flavivirin protease NS2 99.1 4.7E-12 1.6E-16 111.7 -2.9 100 1-125 272-381 (673)
74 3crv_A XPD/RAD3 related DNA he 98.7 2E-08 6.9E-13 86.6 6.6 87 2-90 50-187 (551)
75 1z63_A Helicase of the SNF2/RA 98.6 2.9E-08 9.8E-13 84.2 4.7 100 2-118 89-188 (500)
76 1z3i_X Similar to RAD54-like; 98.4 3.6E-06 1.2E-10 73.9 12.0 108 2-118 117-231 (644)
77 3mwy_W Chromo domain-containin 98.3 1.1E-06 3.8E-11 78.9 8.2 120 2-131 289-423 (800)
78 3dmq_A RNA polymerase-associat 98.2 2.3E-07 7.9E-12 85.0 0.6 112 1-118 202-317 (968)
79 2vl7_A XPD; helicase, unknown 98.1 1.9E-06 6.5E-11 74.1 4.1 39 50-89 143-188 (540)
80 3jux_A Protein translocase sub 97.7 0.00011 3.8E-09 65.1 9.2 86 1-89 118-258 (822)
81 1w36_D RECD, exodeoxyribonucle 97.3 0.0005 1.7E-08 59.9 7.0 99 2-116 199-298 (608)
82 2d7d_A Uvrabc system protein B 96.3 0.0011 3.7E-08 58.4 1.3 58 57-122 320-401 (661)
83 1c4o_A DNA nucleotide excision 95.7 0.0029 1E-07 55.6 1.6 57 57-121 314-394 (664)
84 2p6n_A ATP-dependent RNA helic 95.7 0.12 4E-06 38.0 10.0 72 1-84 56-130 (191)
85 2hjv_A ATP-dependent RNA helic 95.6 0.067 2.3E-06 38.0 8.3 72 1-84 37-111 (163)
86 1fuk_A Eukaryotic initiation f 95.3 0.15 5.1E-06 36.2 9.2 72 1-84 32-106 (165)
87 3eaq_A Heat resistant RNA depe 95.0 0.14 4.9E-06 38.0 8.7 70 1-82 33-105 (212)
88 2jgn_A DBX, DDX3, ATP-dependen 94.8 0.13 4.4E-06 37.5 7.7 70 1-82 48-120 (185)
89 2rb4_A ATP-dependent RNA helic 94.5 0.13 4.4E-06 36.9 7.1 69 2-82 37-108 (175)
90 1t5i_A C_terminal domain of A 94.3 0.17 5.9E-06 36.2 7.4 72 1-84 33-107 (172)
91 2i4i_A ATP-dependent RNA helic 93.7 0.47 1.6E-05 38.2 9.6 69 2-82 279-350 (417)
92 3i5x_A ATP-dependent RNA helic 93.1 0.45 1.5E-05 40.3 9.0 74 2-84 342-418 (563)
93 3i32_A Heat resistant RNA depe 93.0 0.37 1.3E-05 38.1 7.7 70 1-82 30-102 (300)
94 2db3_A ATP-dependent RNA helic 92.9 0.46 1.6E-05 39.1 8.5 69 2-82 303-374 (434)
95 3sqw_A ATP-dependent RNA helic 92.9 0.5 1.7E-05 40.4 9.0 75 2-85 291-368 (579)
96 2d7d_A Uvrabc system protein B 92.8 0.55 1.9E-05 41.1 9.3 76 1-88 447-525 (661)
97 1yks_A Genome polyprotein [con 92.6 0.15 5.1E-06 42.4 5.1 67 1-81 179-245 (440)
98 3pey_A ATP-dependent RNA helic 92.5 2.4 8.3E-05 33.5 12.1 74 2-87 246-322 (395)
99 3fht_A ATP-dependent RNA helic 92.4 0.53 1.8E-05 37.8 8.1 69 2-82 269-340 (412)
100 1hv8_A Putative ATP-dependent 92.1 0.6 2E-05 36.7 7.9 71 2-84 241-314 (367)
101 2v6i_A RNA helicase; membrane, 91.9 0.31 1.1E-05 40.3 6.2 66 1-80 173-238 (431)
102 2j0s_A ATP-dependent RNA helic 91.5 0.75 2.6E-05 37.0 8.1 69 2-82 279-350 (410)
103 1c4o_A DNA nucleotide excision 91.4 2.5 8.5E-05 37.0 11.7 75 2-88 442-519 (664)
104 1s2m_A Putative ATP-dependent 91.0 0.76 2.6E-05 36.8 7.6 70 2-83 261-333 (400)
105 1oyw_A RECQ helicase, ATP-depe 91.0 0.74 2.5E-05 39.1 7.8 70 2-83 239-311 (523)
106 1xti_A Probable ATP-dependent 91.0 0.82 2.8E-05 36.4 7.7 72 2-85 253-327 (391)
107 2v1x_A ATP-dependent DNA helic 90.6 0.82 2.8E-05 39.5 7.8 69 2-82 270-341 (591)
108 2eyq_A TRCF, transcription-rep 90.1 0.42 1.4E-05 44.6 5.8 77 1-87 814-893 (1151)
109 2yjt_D ATP-dependent RNA helic 89.0 0.069 2.3E-06 38.2 0.0 71 2-84 33-106 (170)
110 2wv9_A Flavivirin protease NS2 89.2 0.64 2.2E-05 40.9 6.0 67 1-81 412-478 (673)
111 2xau_A PRE-mRNA-splicing facto 89.0 0.49 1.7E-05 42.3 5.3 74 2-82 306-393 (773)
112 1wp9_A ATP-dependent RNA helic 88.1 1.6 5.4E-05 35.3 7.4 73 2-86 364-447 (494)
113 2oca_A DAR protein, ATP-depend 87.7 7.1 0.00024 32.4 11.3 75 2-87 350-427 (510)
114 2jlq_A Serine protease subunit 87.3 0.94 3.2E-05 37.6 5.7 67 1-81 190-256 (451)
115 4a15_A XPD helicase, ATP-depen 87.3 0.43 1.5E-05 41.6 3.7 36 2-38 54-89 (620)
116 3oiy_A Reverse gyrase helicase 85.9 1.5 5.1E-05 35.5 6.0 69 1-84 254-328 (414)
117 3rc3_A ATP-dependent RNA helic 85.7 2.4 8.3E-05 37.3 7.6 74 2-88 323-401 (677)
118 3vkw_A Replicase large subunit 85.3 4.5 0.00015 33.8 8.7 19 2-20 187-205 (446)
119 2whx_A Serine protease/ntpase/ 84.7 1.9 6.4E-05 37.5 6.4 66 1-80 357-422 (618)
120 2z0m_A 337AA long hypothetical 82.2 3.7 0.00013 31.6 6.7 68 2-85 223-293 (337)
121 2gno_A DNA polymerase III, gam 81.7 17 0.00057 28.4 11.1 96 17-114 7-119 (305)
122 4ddu_A Reverse gyrase; topoiso 79.7 3.7 0.00013 38.2 6.6 71 1-86 311-387 (1104)
123 4gl2_A Interferon-induced heli 79.1 1.2 4.2E-05 38.6 3.2 74 2-82 403-488 (699)
124 3kta_B Chromosome segregation 78.6 1.4 4.7E-05 31.8 2.8 41 75-115 85-125 (173)
125 3fmp_B ATP-dependent RNA helic 78.1 0.44 1.5E-05 39.6 0.0 68 2-81 336-406 (479)
126 2va8_A SSO2462, SKI2-type heli 77.9 7.2 0.00025 34.1 7.7 75 1-82 254-362 (715)
127 1sxj_E Activator 1 40 kDa subu 77.9 1.5 5.3E-05 34.5 3.2 43 75-118 133-175 (354)
128 3eiq_A Eukaryotic initiation f 77.8 2.4 8.1E-05 33.9 4.3 69 2-82 283-354 (414)
129 3tbk_A RIG-I helicase domain; 77.6 3.9 0.00013 34.0 5.7 77 1-85 391-479 (555)
130 2zj8_A DNA helicase, putative 77.3 6.1 0.00021 34.6 7.1 74 1-81 239-343 (720)
131 2ykg_A Probable ATP-dependent 77.0 2.2 7.6E-05 37.0 4.2 77 1-85 400-488 (696)
132 2z83_A Helicase/nucleoside tri 76.1 1.1 3.8E-05 37.2 2.0 67 1-81 192-258 (459)
133 2w00_A HSDR, R.ECOR124I; ATP-b 76.1 11 0.00038 34.8 8.6 118 2-131 540-722 (1038)
134 4a15_A XPD helicase, ATP-depen 74.4 2.2 7.4E-05 37.1 3.4 40 50-90 174-218 (620)
135 3o8b_A HCV NS3 protease/helica 73.3 2.1 7.3E-05 37.6 3.1 64 1-81 398-461 (666)
136 2q5c_A NTRC family transcripti 72.2 16 0.00056 26.5 7.3 58 2-65 7-65 (196)
137 3fho_A ATP-dependent RNA helic 72.2 1.1 3.6E-05 37.8 0.8 71 1-83 359-432 (508)
138 2p6r_A Afuhel308 helicase; pro 71.6 6.4 0.00022 34.4 5.8 75 1-82 244-346 (702)
139 4a2p_A RIG-I, retinoic acid in 71.2 4.1 0.00014 33.9 4.3 77 1-85 392-480 (556)
140 1gku_B Reverse gyrase, TOP-RG; 70.1 5.7 0.00019 36.7 5.3 75 1-86 277-352 (1054)
141 1gm5_A RECG; helicase, replica 69.8 0.74 2.5E-05 41.2 -0.7 80 1-87 580-668 (780)
142 3dmq_A RNA polymerase-associat 69.0 4.9 0.00017 36.8 4.5 75 1-86 505-584 (968)
143 2chg_A Replication factor C sm 68.9 12 0.0004 26.5 5.9 40 75-115 101-140 (226)
144 3h1t_A Type I site-specific re 68.6 17 0.00058 30.8 7.7 77 2-85 442-526 (590)
145 2kjq_A DNAA-related protein; s 68.5 1.2 4.1E-05 31.1 0.3 54 74-128 81-139 (149)
146 1fuu_A Yeast initiation factor 68.4 1 3.5E-05 35.8 0.0 69 2-82 262-333 (394)
147 3lwd_A 6-phosphogluconolactona 67.7 9.6 0.00033 28.5 5.3 28 58-86 44-71 (226)
148 3bos_A Putative DNA replicatio 65.0 19 0.00065 25.9 6.5 99 17-117 41-147 (242)
149 3lhi_A Putative 6-phosphogluco 64.9 8.6 0.00029 28.9 4.5 27 58-85 45-71 (232)
150 1sxj_D Activator 1 41 kDa subu 64.4 7.9 0.00027 30.1 4.5 39 76-115 133-171 (353)
151 4a2q_A RIG-I, retinoic acid in 64.2 6.4 0.00022 35.0 4.3 76 2-85 634-721 (797)
152 3u61_B DNA polymerase accessor 63.5 3.7 0.00013 31.9 2.3 42 75-116 104-145 (324)
153 3nwp_A 6-phosphogluconolactona 62.6 11 0.00037 28.4 4.7 27 58-85 48-74 (233)
154 1njg_A DNA polymerase III subu 61.6 8.5 0.00029 27.6 4.0 39 76-115 126-164 (250)
155 1d2n_A N-ethylmaleimide-sensit 61.5 15 0.0005 27.7 5.4 46 75-120 123-178 (272)
156 2gk6_A Regulator of nonsense t 61.2 32 0.0011 29.6 8.0 21 2-22 227-247 (624)
157 4a2w_A RIG-I, retinoic acid in 60.8 9.7 0.00033 34.6 4.9 76 2-85 634-721 (936)
158 1iqp_A RFCS; clamp loader, ext 60.7 18 0.00063 27.5 5.9 40 75-115 109-148 (327)
159 1g5t_A COB(I)alamin adenosyltr 60.7 16 0.00053 26.9 5.1 53 75-127 119-173 (196)
160 1vl1_A 6PGL, 6-phosphogluconol 60.1 14 0.00049 27.7 5.0 28 58-86 56-83 (232)
161 3h4m_A Proteasome-activating n 59.5 10 0.00035 28.6 4.2 12 78-89 112-123 (285)
162 3syl_A Protein CBBX; photosynt 58.2 9.6 0.00033 29.1 3.9 37 78-114 132-176 (309)
163 1y89_A DEVB protein; structura 57.6 25 0.00084 26.3 6.0 64 3-86 4-71 (238)
164 3hjh_A Transcription-repair-co 56.5 23 0.00079 29.7 6.1 59 2-64 42-115 (483)
165 1sxj_C Activator 1 40 kDa subu 54.2 14 0.00047 28.9 4.3 39 75-114 109-147 (340)
166 1l8q_A Chromosomal replication 54.1 8.9 0.0003 29.8 3.1 89 29-118 37-141 (324)
167 2r2a_A Uncharacterized protein 54.1 8.5 0.00029 28.2 2.8 39 77-116 88-132 (199)
168 2wjy_A Regulator of nonsense t 53.3 48 0.0016 29.7 7.9 21 2-22 403-423 (800)
169 1a5t_A Delta prime, HOLB; zinc 53.2 12 0.00042 29.3 3.8 41 74-115 106-146 (334)
170 4aby_A DNA repair protein RECN 52.3 9.3 0.00032 30.8 3.0 39 78-116 317-355 (415)
171 2orw_A Thymidine kinase; TMTK, 52.0 43 0.0015 23.8 6.3 38 76-117 76-113 (184)
172 4ag6_A VIRB4 ATPase, type IV s 51.6 13 0.00046 29.7 3.8 64 76-139 262-334 (392)
173 2xzl_A ATP-dependent helicase 51.5 84 0.0029 28.1 9.2 21 2-22 407-427 (802)
174 3jux_A Protein translocase sub 51.1 27 0.00093 31.3 5.8 53 2-59 477-530 (822)
175 1sxj_B Activator 1 37 kDa subu 51.0 10 0.00036 28.9 3.0 39 76-115 107-145 (323)
176 3te6_A Regulatory protein SIR3 50.9 23 0.00078 28.0 5.0 40 76-118 132-174 (318)
177 2p65_A Hypothetical protein PF 50.4 4.3 0.00015 28.1 0.6 13 77-89 116-128 (187)
178 3auy_A DNA double-strand break 49.6 17 0.00059 29.0 4.2 39 77-115 306-344 (371)
179 3e1s_A Exodeoxyribonuclease V, 49.5 20 0.00067 30.7 4.7 37 76-116 279-315 (574)
180 2z4s_A Chromosomal replication 49.1 15 0.0005 30.3 3.8 41 76-116 194-236 (440)
181 1jr3_A DNA polymerase III subu 49.1 16 0.00053 28.6 3.8 39 75-114 118-156 (373)
182 3ec2_A DNA replication protein 49.0 5.8 0.0002 27.9 1.1 105 15-119 22-145 (180)
183 1jbk_A CLPB protein; beta barr 47.9 25 0.00086 24.0 4.4 26 77-102 116-148 (195)
184 2qen_A Walker-type ATPase; unk 47.1 22 0.00075 27.3 4.4 36 78-114 130-171 (350)
185 2bkx_A Glucosamine-6-phosphate 46.8 81 0.0028 23.2 7.4 65 3-84 3-68 (242)
186 3s99_A Basic membrane lipoprot 46.3 42 0.0014 26.8 5.9 71 12-84 43-118 (356)
187 2ri0_A Glucosamine-6-phosphate 46.0 83 0.0029 23.0 7.3 60 3-84 4-64 (234)
188 2v1u_A Cell division control p 45.9 21 0.00071 27.9 4.1 28 77-104 131-159 (387)
189 2i3b_A HCR-ntpase, human cance 44.8 11 0.00038 27.2 2.1 64 74-140 103-171 (189)
190 2qby_A CDC6 homolog 1, cell di 44.0 31 0.0011 26.8 4.9 40 77-116 129-171 (386)
191 1jr3_D DNA polymerase III, del 42.9 41 0.0014 26.1 5.4 66 74-140 74-142 (343)
192 3l9o_A ATP-dependent RNA helic 42.4 47 0.0016 30.9 6.3 74 1-81 443-553 (1108)
193 1tf5_A Preprotein translocase 41.9 34 0.0012 30.9 5.1 52 2-59 435-488 (844)
194 2qby_B CDC6 homolog 3, cell di 41.8 19 0.00065 28.2 3.3 37 79-116 136-173 (384)
195 1fnn_A CDC6P, cell division co 41.2 8.2 0.00028 30.4 1.0 25 77-102 126-150 (389)
196 3n70_A Transport activator; si 41.0 24 0.00082 23.8 3.3 36 78-114 78-113 (145)
197 1tue_A Replication protein E1; 40.8 1.1E+02 0.0037 22.7 7.3 29 75-103 102-130 (212)
198 3upu_A ATP-dependent DNA helic 40.8 38 0.0013 27.8 5.0 37 74-114 126-162 (459)
199 1w5s_A Origin recognition comp 40.5 25 0.00084 27.8 3.8 14 77-90 139-152 (412)
200 3hu3_A Transitional endoplasmi 39.4 37 0.0013 28.4 4.8 42 78-119 299-350 (489)
201 3tx2_A Probable 6-phosphogluco 39.1 35 0.0012 25.8 4.2 17 70-86 63-79 (251)
202 1e69_A Chromosome segregation 38.5 19 0.00066 28.0 2.8 42 75-116 240-281 (322)
203 2chq_A Replication factor C sm 37.9 7 0.00024 29.9 0.1 39 75-114 101-139 (319)
204 3css_A 6-phosphogluconolactona 37.8 47 0.0016 25.3 4.8 92 3-113 8-107 (267)
205 3co5_A Putative two-component 37.1 38 0.0013 22.7 3.8 39 78-117 77-116 (143)
206 1z5z_A Helicase of the SNF2/RA 36.7 1.1E+02 0.0037 23.1 6.8 75 1-86 114-193 (271)
207 3oc6_A 6-phosphogluconolactona 36.3 37 0.0013 25.6 4.0 17 70-86 63-79 (248)
208 1w1w_A Structural maintenance 36.3 25 0.00086 28.6 3.2 41 75-115 354-395 (430)
209 2fna_A Conserved hypothetical 36.1 48 0.0016 25.3 4.7 36 78-114 139-177 (357)
210 3cf0_A Transitional endoplasmi 35.8 45 0.0015 25.5 4.5 13 78-90 110-122 (301)
211 3eie_A Vacuolar protein sortin 35.5 41 0.0014 26.0 4.2 14 77-90 111-124 (322)
212 3eb9_A 6-phosphogluconolactona 35.0 32 0.0011 26.3 3.4 44 70-116 61-110 (266)
213 2w58_A DNAI, primosome compone 34.8 1.1E+02 0.0039 21.2 6.9 14 75-88 114-127 (202)
214 2xgj_A ATP-dependent RNA helic 34.7 76 0.0026 29.2 6.4 74 1-81 345-455 (1010)
215 2qz4_A Paraplegin; AAA+, SPG7, 34.4 47 0.0016 24.3 4.3 14 77-90 99-112 (262)
216 3hn6_A Glucosamine-6-phosphate 33.9 1.3E+02 0.0045 23.1 6.9 97 3-115 24-130 (289)
217 3r8r_A Transaldolase; pentose 33.9 1.1E+02 0.0039 22.5 6.2 56 8-68 141-196 (212)
218 3b9p_A CG5977-PA, isoform A; A 33.5 49 0.0017 24.9 4.3 15 77-91 114-128 (297)
219 3ico_A 6PGL, 6-phosphogluconol 32.7 39 0.0013 25.9 3.6 43 70-113 79-126 (268)
220 3cpe_A Terminase, DNA packagin 32.0 2.3E+02 0.008 23.9 10.2 98 2-118 211-314 (592)
221 3euj_A Chromosome partition pr 31.4 51 0.0018 27.6 4.3 36 75-113 413-448 (483)
222 2pju_A Propionate catabolism o 30.4 26 0.00089 26.2 2.2 54 3-57 16-69 (225)
223 2qgz_A Helicase loader, putati 29.8 1.5E+02 0.0051 22.8 6.6 71 18-88 139-226 (308)
224 2qp9_X Vacuolar protein sortin 28.8 66 0.0023 25.3 4.4 15 76-90 143-157 (355)
225 2b8t_A Thymidine kinase; deoxy 28.6 1.7E+02 0.0058 21.5 6.4 56 54-115 69-124 (223)
226 2o0j_A Terminase, DNA packagin 28.4 2.3E+02 0.0079 22.8 11.3 27 2-28 211-237 (385)
227 3e15_A Glucose-6-phosphate 1-d 28.2 1.2E+02 0.0042 23.8 5.8 47 70-116 85-135 (312)
228 1sxj_A Activator 1 95 kDa subu 28.1 60 0.0021 27.1 4.3 41 76-118 148-190 (516)
229 3d8b_A Fidgetin-like protein 1 27.6 57 0.0019 25.7 3.9 14 77-90 177-190 (357)
230 3s1x_A Probable transaldolase; 26.8 1.2E+02 0.0043 22.5 5.4 56 8-68 143-198 (223)
231 4ad8_A DNA repair protein RECN 26.4 17 0.00059 30.5 0.6 39 78-116 419-457 (517)
232 3m91_B Prokaryotic ubiquitin-l 25.6 10 0.00034 20.7 -0.7 19 81-99 19-37 (44)
233 1z63_A Helicase of the SNF2/RA 25.2 1.6E+02 0.0056 23.8 6.4 74 2-86 344-422 (500)
234 2q5c_A NTRC family transcripti 25.1 1.1E+02 0.0039 21.9 4.8 40 28-68 119-158 (196)
235 2ehv_A Hypothetical protein PH 24.4 42 0.0014 24.3 2.4 47 75-121 134-185 (251)
236 3vfd_A Spastin; ATPase, microt 23.9 85 0.0029 24.9 4.3 13 78-90 209-221 (389)
237 2fsf_A Preprotein translocase 23.9 1.2E+02 0.0041 27.5 5.5 52 2-59 444-497 (853)
238 4e0q_A COP9 signalosome comple 23.6 1.3E+02 0.0045 20.4 4.7 52 89-140 67-124 (141)
239 1nkt_A Preprotein translocase 23.5 1.5E+02 0.0052 27.0 6.1 52 2-59 463-516 (922)
240 4a4z_A Antiviral helicase SKI2 23.3 1.2E+02 0.0041 27.8 5.6 73 2-82 339-448 (997)
241 1ofh_A ATP-dependent HSL prote 23.2 96 0.0033 23.1 4.3 15 77-91 117-131 (310)
242 1lv7_A FTSH; alpha/beta domain 23.1 1.3E+02 0.0043 22.0 4.9 13 78-90 106-118 (257)
243 4gic_A HDH, histidinol dehydro 22.5 3E+02 0.01 22.6 7.2 67 1-81 273-339 (423)
244 2bjv_A PSP operon transcriptio 22.0 84 0.0029 23.2 3.7 26 77-103 101-126 (265)
245 1xwi_A SKD1 protein; VPS4B, AA 21.1 88 0.003 24.2 3.8 15 76-90 105-119 (322)
246 3uk6_A RUVB-like 2; hexameric 20.9 1.1E+02 0.0037 23.7 4.3 13 78-90 191-203 (368)
247 3pc6_A DNA repair protein XRCC 20.9 69 0.0024 20.7 2.6 72 13-86 25-99 (104)
248 2vl7_A XPD; helicase, unknown 20.6 97 0.0033 26.0 4.1 68 2-84 387-460 (540)
249 2x9q_A Cyclodipeptide syntheta 20.6 63 0.0022 25.1 2.7 45 42-87 71-123 (289)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.96 E-value=3.3e-28 Score=189.82 Aligned_cols=137 Identities=36% Similarity=0.588 Sum_probs=127.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++|||+||.|+++.++++++.. ++++..++||.....+...+ ..+++|+||||+++.+++.. +..++++++++
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~l 180 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDL-ERGVEICIATPGRLIDFLEC-GKTNLRRTTYL 180 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHH-HHCCSEEEECHHHHHHHHHH-TSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCCCcccccEE
Confidence 38999999999999999999999887 89999999999888777776 46899999999999999998 78899999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (184)
|+||||.+++.+|...+..+++.+++++|+++||||+++++..+++.++++|+.|.++..
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999998876
No 2
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=196.53 Aligned_cols=135 Identities=28% Similarity=0.412 Sum_probs=122.3
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+||||+||||||.|+++.++.++++++++++..++|+....... ..+++|+||||++|.+++.+.+.+++++++++
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~l 239 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh----cCCCCEEEECHHHHHHHHHhcCCCChhhceEE
Confidence 48999999999999999999999887789999999887643322 35789999999999999976567889999999
Q ss_pred EechhhHhhc-cchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEcc
Q 029993 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRA 139 (184)
Q Consensus 81 VvDEaD~l~~-~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~ 139 (184)
|+||||.|++ .+|...+..|++.+++.+|+++||||+++++..+++.++++|..|.+..
T Consensus 240 VlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp EETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred EEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 9999999998 6899999999999999999999999999999999999999999998865
No 3
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.95 E-value=2e-27 Score=186.27 Aligned_cols=148 Identities=35% Similarity=0.572 Sum_probs=123.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++|||+||.|+++.+++++... ++++..++||.....+...+ ..+++|+||||+++.+++.. +.+++++++++
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~l 178 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREV-QMGCHLLVATPGRLVDFIEK-NKISLEFCKYI 178 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHH-SSCCSEEEECHHHHHHHHHT-TSBCCTTCCEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh-CCCCCEEEECHHHHHHHHHc-CCCChhhCCEE
Confidence 38999999999999999999998765 78999999998877777666 56899999999999999988 77889999999
Q ss_pred EechhhHhhccchHHHHHHHHHh--CCC--CceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhccc
Q 029993 81 VLDEADRLLDMGFQKQISYIISR--LPK--LRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASS 156 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~--l~~--~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 156 (184)
|+||||.+++.+|...+..+++. ++. .+|++++|||+++++..+++.++++|..|.++.. .
T Consensus 179 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~---------------~ 243 (253)
T 1wrb_A 179 VLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV---------------G 243 (253)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC------------------
T ss_pred EEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC---------------C
Confidence 99999999999999999999995 444 6899999999999999999999999999999887 5
Q ss_pred CCCCcceeEE
Q 029993 157 KTPLGLHLEV 166 (184)
Q Consensus 157 ~~~~~l~~~~ 166 (184)
...++++|++
T Consensus 244 ~~~~~i~q~~ 253 (253)
T 1wrb_A 244 STSDSIKQEI 253 (253)
T ss_dssp ----------
T ss_pred CCcCCceecC
Confidence 5667777753
No 4
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.95 E-value=4.5e-27 Score=197.85 Aligned_cols=153 Identities=31% Similarity=0.502 Sum_probs=137.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||||||.|+++.+++++... ++++..++||.....+...+ ..+++|+||||++|.+++.. +.+++++++++
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~l 207 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECI-TRGCHVVIATPGRLLDFVDR-TFITFEDTRFV 207 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHH-TTCCSEEEECHHHHHHHHHT-TSCCCTTCCEE
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHh-hcCCCEEEEChHHHHHHHHh-CCcccccCCeE
Confidence 48999999999999999999998765 78999999999887777666 56899999999999999988 77889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhC--CCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRL--PKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKT 158 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l--~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
|+||||+|++.+|...+..++..+ ++.+|+++||||+++++..++..++++|..+.++.. ...
T Consensus 208 VlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~---------------~~~ 272 (434)
T 2db3_A 208 VLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV---------------GGA 272 (434)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESST---------------TCC
T ss_pred EEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccc---------------ccc
Confidence 999999999999999999999885 678999999999999999999999999999998876 556
Q ss_pred CCcceeEEEEecC
Q 029993 159 PLGLHLEVLRLNI 171 (184)
Q Consensus 159 ~~~l~~~~~~~~~ 171 (184)
..++.|.+..++.
T Consensus 273 ~~~i~~~~~~~~~ 285 (434)
T 2db3_A 273 CSDVKQTIYEVNK 285 (434)
T ss_dssp CTTEEEEEEECCG
T ss_pred ccccceEEEEeCc
Confidence 6778888888775
No 5
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.95 E-value=1e-26 Score=180.90 Aligned_cols=137 Identities=34% Similarity=0.583 Sum_probs=113.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++|+.|+++.+++++... ++++..++||.....+...+...+++|+|+||+++.+++.. +.+.+++++++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~l 177 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMF 177 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEE
Confidence 47999999999999999999998766 78888899988877776666555599999999999999988 77889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEcc
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRA 139 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~ 139 (184)
|+||||.+++.+|...+..+++.+++.+|++++|||+++++.++++.++++|+.|.++.
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~~ 236 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKK 236 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999997754
No 6
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=178.30 Aligned_cols=133 Identities=32% Similarity=0.542 Sum_probs=117.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++||.|+++.++++.. +++++..++||.....+...+ ..+++|+||||+++.+++.. +..++++++++
T Consensus 96 ~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~l 171 (228)
T 3iuy_A 96 GMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDI-SKGVDIIIATPGRLNDLQMN-NSVNLRSITYL 171 (228)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHH-HSCCSEEEECHHHHHHHHHT-TCCCCTTCCEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHh-cCCCCEEEECHHHHHHHHHc-CCcCcccceEE
Confidence 379999999999999999999862 378999999998877776666 56899999999999999888 78889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEE
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEV 137 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~ 137 (184)
|+||||.+++.+|...+..+++.+++++|++++|||++++++.+++.++++|+.|.+
T Consensus 172 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 172 VIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp EECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred EEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 999999999999999999999999999999999999999999999999999998864
No 7
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.94 E-value=3.1e-26 Score=179.76 Aligned_cols=136 Identities=38% Similarity=0.650 Sum_probs=124.3
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++|||+||.|+++.+++++... ++++..++||.....+...+ ..+++|+|+||+++.+++...+.+++++++++
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~l 190 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLAL-AKKPHIIIATPGRLIDHLENTKGFNLRALKYL 190 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHH-HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHh-cCCCCEEEECHHHHHHHHHcCCCcCccccCEE
Confidence 38999999999999999999998876 78999999998877666665 46899999999999999987566789999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEc
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (184)
|+||||.+.+.+|...+..+++.+++++|++++|||+++++.++++.++++|+.|.++
T Consensus 191 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 191 VMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999998764
No 8
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.94 E-value=1.8e-26 Score=178.64 Aligned_cols=135 Identities=30% Similarity=0.530 Sum_probs=122.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++|+.|+++.+++++...+++++..++||.....+...+ .+++|+|+||+++.+++.. +.+++++++++
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~l 170 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL--KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLF 170 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT--TSCSEEEECHHHHHHHHHT-TSSCGGGCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc--cCCCEEEECHHHHHHHHhc-CCcccccCCEE
Confidence 47999999999999999999998776689999999998877666555 5799999999999999987 77889999999
Q ss_pred EechhhHhhccc-hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEc
Q 029993 81 VLDEADRLLDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138 (184)
Q Consensus 81 VvDEaD~l~~~~-~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (184)
|+||||.+++.+ |...+..+++.+++.+|++++|||+++++..+++.++++|..|.++
T Consensus 171 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 171 ILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp EESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred EeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 999999999887 9999999999999999999999999999999999999999988754
No 9
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=6.2e-26 Score=172.16 Aligned_cols=133 Identities=32% Similarity=0.567 Sum_probs=122.6
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++|+.|+++.+.++.+..+++++..+.|+.....+...+ ..+++|+|+||+++.+++.. +...+++++++
T Consensus 73 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~l 150 (206)
T 1vec_A 73 QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL-DDTVHVVIATPGRILDLIKK-GVAKVDHVQMI 150 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT-TSCCSEEEECHHHHHHHHHT-TCSCCTTCCEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc-CCCCCEEEeCHHHHHHHHHc-CCcCcccCCEE
Confidence 38999999999999999999998877788999999998877766665 56899999999999999988 77889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEE
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRI 135 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i 135 (184)
|+||||.+.+.+|...+..+++.+++++|++++|||+++++..+++.++++|..|
T Consensus 151 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 151 VLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp EEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred EEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999999999999999999999999999999999999999999876
No 10
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=4.3e-26 Score=174.94 Aligned_cols=136 Identities=25% Similarity=0.531 Sum_probs=124.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++|+.|+++.++++.+..+++++..++|+.....+...+.+..++|+|+||+++..++.. +.+.+++++++
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~l 162 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHF 162 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEE
Confidence 37999999999999999999998877789999999998887777777666789999999999999988 77889999999
Q ss_pred EechhhHhhc-cchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEE
Q 029993 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEV 137 (184)
Q Consensus 81 VvDEaD~l~~-~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~ 137 (184)
|+||||.+++ .+|...+..+++.+++.+|++++|||+++++.++++.++++|..|.+
T Consensus 163 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~v 220 (220)
T 1t6n_A 163 ILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220 (220)
T ss_dssp EEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEEC
T ss_pred EEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEeC
Confidence 9999999987 58899999999999999999999999999999999999999998763
No 11
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.94 E-value=6.8e-26 Score=175.71 Aligned_cols=137 Identities=42% Similarity=0.647 Sum_probs=121.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++||.|+++.+++++... ++++..++||.....+...+ .+++|+||||+++.+++.....+++++++++
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~l 175 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERI--NNINILVCTPGRLLQHMDETVSFHATDLQML 175 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHH--TTCSEEEECHHHHHHHHHHCSSCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhC--CCCCEEEECHHHHHHHHHhcCCcccccccEE
Confidence 37999999999999999999998765 78999999998877666655 5899999999999999987446788999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (184)
|+||||.+.+.+|...+..+++.+++.+|++++|||+++++..+++.++++|..|.++..
T Consensus 176 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 235 (236)
T 2pl3_A 176 VLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEK 235 (236)
T ss_dssp EETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC-
T ss_pred EEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999987643
No 12
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.94 E-value=9.9e-26 Score=178.07 Aligned_cols=131 Identities=40% Similarity=0.642 Sum_probs=119.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
++||++|||+||.|+++.+++++... +.++..++|+.....+...+ ..+++|+||||+++.+++.....+.+++++++
T Consensus 128 ~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~l 205 (262)
T 3ly5_A 128 GVLILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKL-GNGINIIVATPGRLLDHMQNTPGFMYKNLQCL 205 (262)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHH-HHCCSEEEECHHHHHHHHHHCTTCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHh-cCCCCEEEEcHHHHHHHHHccCCcccccCCEE
Confidence 48999999999999999999998876 78899999998887777766 45799999999999999988456789999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCe
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPV 133 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~ 133 (184)
|+||||.+++.+|...+..+++.+++.+|++++|||+++++..+++.+++++.
T Consensus 206 ViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 206 VIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred EEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999998653
No 13
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.94 E-value=3.8e-26 Score=175.40 Aligned_cols=138 Identities=36% Similarity=0.574 Sum_probs=121.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCC---CceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLP---DVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+||++||++||.|+++.++++++..+ ++++..++||.....+...+ ..+++|+||||+++.+++.. +.++++++
T Consensus 74 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~ 151 (219)
T 1q0u_A 74 QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL-NVQPHIVIGTPGRINDFIRE-QALDVHTA 151 (219)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCC-SSCCSEEEECHHHHHHHHHT-TCCCGGGC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHc-CCCCCEEEeCHHHHHHHHHc-CCCCcCcc
Confidence 479999999999999999999987653 57888888888765554444 35799999999999999988 77889999
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccC
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (184)
+++|+||||.+.+.+|...+..+++.+++.+|++++|||+++++.++++.++++|..+.+...
T Consensus 152 ~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 152 HILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp CEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred eEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 999999999999999999999999999999999999999999999999999999999876543
No 14
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.93 E-value=3.6e-25 Score=167.90 Aligned_cols=133 Identities=33% Similarity=0.546 Sum_probs=120.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++|+.|+++.+.+++. ++++..++|+.....+...+ ..+++|+|+||+++.+++.. +.+++++++++
T Consensus 74 ~~lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~i 148 (207)
T 2gxq_A 74 RALVLTPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEAL-LRGADAVVATPGRALDYLRQ-GVLDLSRVEVA 148 (207)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHH-HHCCSEEEECHHHHHHHHHH-TSSCCTTCSEE
T ss_pred cEEEEECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHh-hCCCCEEEECHHHHHHHHHc-CCcchhhceEE
Confidence 379999999999999999999864 47888889988877666666 45899999999999999998 88889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEc
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (184)
|+||||.+.+.+|...+..+++.+++.+|++++|||++++++.+++.++++|..|.++
T Consensus 149 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 149 VLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 9999999999999999999999999999999999999999999999999999998764
No 15
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.93 E-value=3.7e-25 Score=170.06 Aligned_cols=136 Identities=35% Similarity=0.591 Sum_probs=114.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++|+.|+++.+.+++... ++++..+.|+.....+...+ ..++|+|+||+++.+++.. +...+++++++
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~i 159 (224)
T 1qde_A 84 QALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGL--RDAQIVVGTPGRVFDNIQR-RRFRTDKIKMF 159 (224)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------C--TTCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcC--CCCCEEEECHHHHHHHHHh-CCcchhhCcEE
Confidence 47999999999999999999998766 78999999988776665554 3499999999999999988 78889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (184)
|+||||.+.+.+|...+..+++.+++.+|++++|||+++++.++++.++++|..|.++.+
T Consensus 160 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 160 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999987765
No 16
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.92 E-value=2.8e-25 Score=173.13 Aligned_cols=139 Identities=27% Similarity=0.385 Sum_probs=116.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcC-CccCCCceE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD-VLDFRNLVI 79 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~-~~~~~~l~~ 79 (184)
.+||++||++||.|+++.+.+++... ++++..+.|+.............+++|+||||+++.+++.... .++++++++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~ 178 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcE
Confidence 38999999999999999999998776 7888777766544333222224679999999999999998722 578999999
Q ss_pred EEechhhHhhc---cchHHHHHHHHHhCC-CCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccC
Q 029993 80 LVLDEADRLLD---MGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 80 lVvDEaD~l~~---~~~~~~l~~i~~~l~-~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (184)
+|+||||.+++ .+|...+..++..+. +..|++++|||+++++..+++.++++|+.|.++..
T Consensus 179 lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 179 LVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp EEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred EEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 99999999998 579999999988774 57899999999999999999999999999998765
No 17
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.92 E-value=8.2e-24 Score=175.55 Aligned_cols=152 Identities=36% Similarity=0.600 Sum_probs=132.8
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+||++||++||.|+++.+.+++... ++++..++||.....+...+ ..+++|+|+||++|.+++.. +.+.+++++++|
T Consensus 104 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~iV 180 (417)
T 2i4i_A 104 SLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDL-ERGCHLLVATPGRLVDMMER-GKIGLDFCKYLV 180 (417)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHH-TTCCSEEEECHHHHHHHHHT-TSBCCTTCCEEE
T ss_pred EEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHh-hCCCCEEEEChHHHHHHHHc-CCcChhhCcEEE
Confidence 7999999999999999999998765 79999999999888777776 56899999999999999988 778899999999
Q ss_pred echhhHhhccchHHHHHHHHHh--CCC--CceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccC
Q 029993 82 LDEADRLLDMGFQKQISYIISR--LPK--LRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSK 157 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~--l~~--~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
+||||.+.+.+|...+..++.. ++. .+|++++|||+++++..+...++.+|..+.+... ..
T Consensus 181 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 245 (417)
T 2i4i_A 181 LDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV---------------GS 245 (417)
T ss_dssp ESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-------------------
T ss_pred EEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCC---------------CC
Confidence 9999999999999999999985 333 6899999999999999999999999999888776 55
Q ss_pred CCCcceeEEEEecC
Q 029993 158 TPLGLHLEVLRLNI 171 (184)
Q Consensus 158 ~~~~l~~~~~~~~~ 171 (184)
.+.++.+.|+.++.
T Consensus 246 ~~~~i~~~~~~~~~ 259 (417)
T 2i4i_A 246 TSENITQKVVWVEE 259 (417)
T ss_dssp CCSSEEEEEEECCG
T ss_pred CccCceEEEEEecc
Confidence 67788888888775
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.91 E-value=1.1e-23 Score=174.71 Aligned_cols=153 Identities=32% Similarity=0.539 Sum_probs=139.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++||.|+++.+.+++... ++++..+.||.....+...+ ..+++|+|+||+++.+++.. +.+.+++++++
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~v 183 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKL-DYGQHVVAGTPGRVFDMIRR-RSLRTRAIKML 183 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHH-HHCCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHh-hcCCCEEEcCHHHHHHHHHh-CCccHhheeEE
Confidence 48999999999999999999998776 79999999999888877776 46899999999999999988 78889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|+||||.+.+.+|...+..+++.+++.+|++++|||+++++..+...++.+|..+.+... ...+.
T Consensus 184 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 248 (410)
T 2j0s_A 184 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD---------------ELTLE 248 (410)
T ss_dssp EEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGG---------------GCSCT
T ss_pred EEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCc---------------cccCC
Confidence 999999999999999999999999999999999999999999999999999998887666 56778
Q ss_pred cceeEEEEecC
Q 029993 161 GLHLEVLRLNI 171 (184)
Q Consensus 161 ~l~~~~~~~~~ 171 (184)
++.++|..++.
T Consensus 249 ~~~~~~~~~~~ 259 (410)
T 2j0s_A 249 GIKQFFVAVER 259 (410)
T ss_dssp TEEEEEEEESS
T ss_pred CceEEEEEeCc
Confidence 88899988876
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.90 E-value=3e-23 Score=171.81 Aligned_cols=154 Identities=33% Similarity=0.550 Sum_probs=140.3
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++|+.|+++.+.+++... +..+..++|+.....+...+...+++|+|+||++|.+++.. +.+.+++++++
T Consensus 110 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~v 187 (414)
T 3eiq_A 110 QALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMF 187 (414)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEE
T ss_pred eEEEEeChHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEE
Confidence 47999999999999999999998776 78999999998888777777557899999999999999998 88889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|+||||.+.+.+|...+..++..+++.+|++++|||+++++..+...++.+|..+..... ...+.
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 252 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE---------------ELTLE 252 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCC---------------CCCTT
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCC---------------ccCCC
Confidence 999999999999999999999999999999999999999999999999999999887777 66778
Q ss_pred cceeEEEEecC
Q 029993 161 GLHLEVLRLNI 171 (184)
Q Consensus 161 ~l~~~~~~~~~ 171 (184)
.+.++|+.++.
T Consensus 253 ~~~~~~~~~~~ 263 (414)
T 3eiq_A 253 GIRQFYINVER 263 (414)
T ss_dssp SCCEEEEECSS
T ss_pred CceEEEEEeCh
Confidence 88888888776
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.90 E-value=1.1e-22 Score=167.32 Aligned_cols=156 Identities=25% Similarity=0.490 Sum_probs=137.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++|+.|+++.+.++.+..+++++..+.|+.....+...+.+..++|+|+||+++..++.. +...+++++++
T Consensus 78 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~v 156 (391)
T 1xti_A 78 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHF 156 (391)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEE
T ss_pred eEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEE
Confidence 37999999999999999999999888789999999998887777777666789999999999999988 77889999999
Q ss_pred EechhhHhhc-cchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCC
Q 029993 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (184)
Q Consensus 81 VvDEaD~l~~-~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+||||.+.+ .++...+..+++..++.+|++++|||+++++..+...++.+|..+...... ....
T Consensus 157 ViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 222 (391)
T 1xti_A 157 ILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET--------------KLTL 222 (391)
T ss_dssp EECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCC--------------CCCC
T ss_pred EEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCcc--------------ccCc
Confidence 9999999987 478899999999999999999999999999999999999999998876653 3455
Q ss_pred CcceeEEEEecC
Q 029993 160 LGLHLEVLRLNI 171 (184)
Q Consensus 160 ~~l~~~~~~~~~ 171 (184)
..+.++|..++.
T Consensus 223 ~~~~~~~~~~~~ 234 (391)
T 1xti_A 223 HGLQQYYVKLKD 234 (391)
T ss_dssp TTCEEEEEECCG
T ss_pred ccceEEEEEcCc
Confidence 677788887765
No 21
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.90 E-value=2.2e-23 Score=176.86 Aligned_cols=152 Identities=26% Similarity=0.356 Sum_probs=119.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
++|||+||++||.|+++.+++++.+.+++.+....++....... ..+++|+||||+++.+++.+.+.+++++++++
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~i 239 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc----cCCCCEEEECchHHHHHHHhcCCcCcccCCEE
Confidence 48999999999999999999999888788988888876543221 34689999999999999977567789999999
Q ss_pred EechhhHhhc-cchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCC
Q 029993 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (184)
Q Consensus 81 VvDEaD~l~~-~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+||||.+++ .+|...+..+.+.+++.+|++++|||++.++..++..++++|..+.+... ...+
T Consensus 240 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~ 304 (479)
T 3fmp_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE---------------EETL 304 (479)
T ss_dssp EECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------
T ss_pred EEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccc---------------ccCc
Confidence 9999999997 58999999999999999999999999999999999999999999998887 5667
Q ss_pred CcceeEEEEecC
Q 029993 160 LGLHLEVLRLNI 171 (184)
Q Consensus 160 ~~l~~~~~~~~~ 171 (184)
..+.|+|+.++.
T Consensus 305 ~~~~~~~~~~~~ 316 (479)
T 3fmp_B 305 DTIKQYYVLCSS 316 (479)
T ss_dssp ------------
T ss_pred CCceEEEEEeCC
Confidence 777788877765
No 22
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.88 E-value=7.4e-22 Score=162.31 Aligned_cols=136 Identities=35% Similarity=0.591 Sum_probs=123.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++|+.|+++.+.++.... ++++..+.|+.....+...+. +++|+|+||+++.+.+.. +...+.++.++
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~--~~~i~v~T~~~l~~~~~~-~~~~~~~~~~v 166 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQR-RRFRTDKIKMF 166 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHH--HCSEEEECHHHHHHHHHT-TSSCCTTCCEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcC--CCCEEEECHHHHHHHHHh-CCcchhhCcEE
Confidence 47999999999999999999998766 789999999988776666652 689999999999999988 77888999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~ 140 (184)
|+||||.+.+.++...+..++..+++.+|++++|||+++.+..+...++.+|..+.....
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 226 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 226 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-
T ss_pred EEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCc
Confidence 999999999999999999999999999999999999999999999999999999987766
No 23
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.88 E-value=7.3e-22 Score=171.42 Aligned_cols=160 Identities=30% Similarity=0.424 Sum_probs=131.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhc---CCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFIST---LPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+|||+||++||.|+++.+.++... .+.+.+..+.||.....+...+...+++|+||||++|.+++.......++++
T Consensus 97 ~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~ 176 (579)
T 3sqw_A 97 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 176 (579)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccC
Confidence 4799999999999999999998753 3467888999999888888887667899999999999999887334568999
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCC-------CCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchh
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASS 150 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~-------~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 150 (184)
+++|+||||.|++.+|..++..|+..++ ..+|+++||||+++.+..++.+++.+|..+.+.....
T Consensus 177 ~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~-------- 248 (579)
T 3sqw_A 177 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDK-------- 248 (579)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCS--------
T ss_pred CEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCc--------
Confidence 9999999999999999999999887764 3679999999999999999999999998887654310
Q ss_pred hhhcccCCCCcceeEEEEecC
Q 029993 151 QQLASSKTPLGLHLEVLRLNI 171 (184)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~~~ 171 (184)
........+.+.+..++.
T Consensus 249 ---~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 249 ---NEPEAHERIDQSVVISEK 266 (579)
T ss_dssp ---SSCSSCTTEEEEEEEESS
T ss_pred ---cccccccccceEEEEecc
Confidence 013344566677776664
No 24
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.87 E-value=1.2e-21 Score=161.90 Aligned_cols=152 Identities=26% Similarity=0.356 Sum_probs=133.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++||.|+++.+++++...+++++....++....... ..+++|+||||+++.+++...+.+++++++++
T Consensus 97 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 97 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh----cCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 37999999999999999999999887789998888877643321 35689999999999999976567788999999
Q ss_pred EechhhHhhc-cchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCC
Q 029993 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (184)
Q Consensus 81 VvDEaD~l~~-~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+||||.+.+ .++...+..+.+.+++.+|++++|||+++++..++..++.+|..+.+... ...+
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 237 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE---------------EETL 237 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGG---------------GSSC
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccc---------------cccc
Confidence 9999999987 67899999999999999999999999999999999999999999988777 6677
Q ss_pred CcceeEEEEecC
Q 029993 160 LGLHLEVLRLNI 171 (184)
Q Consensus 160 ~~l~~~~~~~~~ 171 (184)
..+.++|+.+..
T Consensus 238 ~~~~~~~~~~~~ 249 (412)
T 3fht_A 238 DTIKQYYVLCSS 249 (412)
T ss_dssp TTEEEEEEECSS
T ss_pred cCceEEEEEcCC
Confidence 888888888875
No 25
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.87 E-value=1.5e-21 Score=168.41 Aligned_cols=160 Identities=30% Similarity=0.424 Sum_probs=130.6
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhc---CCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFIST---LPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+|||+||++||.|+++.++++... .+...+..++||.....+...+...+++|+||||+++.+++.+.....++++
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 227 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccc
Confidence 3799999999999999999998653 3457788899999888887777677899999999999999887334568899
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCC-------CCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchh
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLP-------KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASS 150 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~-------~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 150 (184)
+++|+||||.|++.+|...+..++..++ ..+|++++|||+++.+..++.+++.+|..+.+.....
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~-------- 299 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDK-------- 299 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCS--------
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCC--------
Confidence 9999999999999999999999887763 3679999999999999999999999998887654310
Q ss_pred hhhcccCCCCcceeEEEEecC
Q 029993 151 QQLASSKTPLGLHLEVLRLNI 171 (184)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~~~ 171 (184)
........+.+.+..++.
T Consensus 300 ---~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 300 ---NEPEAHERIDQSVVISEK 317 (563)
T ss_dssp ---SSCSSCTTEEEEEEEESS
T ss_pred ---CCccccccCceEEEECch
Confidence 013344556677776654
No 26
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.87 E-value=5.3e-21 Score=157.95 Aligned_cols=152 Identities=31% Similarity=0.502 Sum_probs=131.5
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++|+.|+++.+++++... ++++..+.|+.....+...+ ..+++|+|+||+++.+++.. +...++++.++
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~v 167 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRL-NETVHILVGTPGRVLDLASR-KVADLSDCSLF 167 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHT-TSCCSEEEECHHHHHHHHHT-TCSCCTTCCEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHh-cCCCCEEEEchHHHHHHHHh-CCcccccCCEE
Confidence 37999999999999999999998776 78999999988876665554 46899999999999999887 77889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTPL 160 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|+||||.+.+.+|...+..++..+++..|++++|||++..+..+...++.+|..+..... ....
T Consensus 168 IiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 231 (400)
T 1s2m_A 168 IMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE----------------LTLK 231 (400)
T ss_dssp EEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS----------------CBCT
T ss_pred EEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc----------------cccC
Confidence 999999999989999999999999999999999999999999999999999987654432 3456
Q ss_pred cceeEEEEecC
Q 029993 161 GLHLEVLRLNI 171 (184)
Q Consensus 161 ~l~~~~~~~~~ 171 (184)
++.++|..++.
T Consensus 232 ~~~~~~~~~~~ 242 (400)
T 1s2m_A 232 GITQYYAFVEE 242 (400)
T ss_dssp TEEEEEEECCG
T ss_pred CceeEEEEech
Confidence 67777777765
No 27
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.86 E-value=3e-20 Score=149.53 Aligned_cols=132 Identities=33% Similarity=0.580 Sum_probs=119.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++|+.|+++.+.+++... +.++..++|+.....+...+ .+++|+|+||+++.+++.. +.++++++.++
T Consensus 58 ~~liv~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~i 133 (337)
T 2z0m_A 58 KSLVVTPTRELTRQVASHIRDIGRYM-DTKVAEVYGGMPYKAQINRV--RNADIVVATPGRLLDLWSK-GVIDLSSFEIV 133 (337)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECTTSCHHHHHHHH--TTCSEEEECHHHHHHHHHT-TSCCGGGCSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhc-CCcEEEEECCcchHHHHhhc--CCCCEEEECHHHHHHHHHc-CCcchhhCcEE
Confidence 37999999999999999999998766 78999999998877766665 4699999999999999887 77789999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEE
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIE 136 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~ 136 (184)
|+||||.+.+.++...+..++..++...|++++|||+++.+......++.++..+.
T Consensus 134 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~ 189 (337)
T 2z0m_A 134 IIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIE 189 (337)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEE
T ss_pred EEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeee
Confidence 99999999999999999999999999999999999999999999999999988774
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.86 E-value=2e-20 Score=152.05 Aligned_cols=135 Identities=32% Similarity=0.544 Sum_probs=120.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++|+.|+++.+.++.+.. ++++..+.|+.....+...+ .+++|+|+||+++.+.+.. +...++++.++
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~--~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~i 151 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKAL--KNANIVVGTPGRILDHINR-GTLNLKNVKYF 151 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHH--HTCSEEEECHHHHHHHHHT-TCSCTTSCCEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhc--CCCCEEEecHHHHHHHHHc-CCcccccCCEE
Confidence 37999999999999999999998764 78899999998877776665 3789999999999999988 77889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEcc
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRA 139 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~ 139 (184)
|+||||.+.+.++...+..++..+++..|++++|||++++...+...++.++..+....
T Consensus 152 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 210 (367)
T 1hv8_A 152 ILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI 210 (367)
T ss_dssp EEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS
T ss_pred EEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC
Confidence 99999999999999999999999999999999999999999999999999887766433
No 29
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.85 E-value=2.8e-20 Score=152.63 Aligned_cols=149 Identities=29% Similarity=0.412 Sum_probs=128.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++|+.|+++.+.+++... ++.+....++...... ..+++|+|+||+++.+++.. +...++++.++
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~i 149 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKNK-----QINAQVIVGTPGTVLDLMRR-KLMQLQKIKIF 149 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTTS-----CBCCSEEEECHHHHHHHHHT-TCBCCTTCCEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhhc-----cCCCCEEEEcHHHHHHHHHc-CCcccccCCEE
Confidence 37999999999999999999998765 7888887776543221 34789999999999999988 78889999999
Q ss_pred EechhhHhhc-cchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCC
Q 029993 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (184)
Q Consensus 81 VvDEaD~l~~-~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+||||.+.+ .++...+..+.+.+++..|++++|||+++.+..+...++.++..+..... ...+
T Consensus 150 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 214 (395)
T 3pey_A 150 VLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTN---------------EVNV 214 (395)
T ss_dssp EEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGG---------------GCSC
T ss_pred EEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccc---------------cccc
Confidence 9999999988 67899999999999999999999999999999999999999998887766 5666
Q ss_pred CcceeEEEEecC
Q 029993 160 LGLHLEVLRLNI 171 (184)
Q Consensus 160 ~~l~~~~~~~~~ 171 (184)
..+.+.|..+..
T Consensus 215 ~~~~~~~~~~~~ 226 (395)
T 3pey_A 215 DAIKQLYMDCKN 226 (395)
T ss_dssp TTEEEEEEECSS
T ss_pred ccccEEEEEcCc
Confidence 778888887754
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.80 E-value=4.7e-20 Score=153.48 Aligned_cols=146 Identities=18% Similarity=0.175 Sum_probs=112.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcch---HHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+||++||++||.|+++.+.++++ .++++..++|+... ..+...+..+.++|+||||+++.+++.. +.++++
T Consensus 66 ~~lil~Pt~~L~~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~ 140 (414)
T 3oiy_A 66 KSALVFPTVTLVKQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRF 140 (414)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCC
T ss_pred EEEEEECCHHHHHHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccc
Confidence 489999999999999999999876 38999999999887 5555666555599999999999988765 667899
Q ss_pred eEEEechhhH----------hhc-cchHHH-HHHHHHhCC-----------CCceEEEEeee-CchHHH-HHHHHhCCCC
Q 029993 78 VILVLDEADR----------LLD-MGFQKQ-ISYIISRLP-----------KLRRTGLFSAT-QTEAVE-ELSKAGLRNP 132 (184)
Q Consensus 78 ~~lVvDEaD~----------l~~-~~~~~~-l~~i~~~l~-----------~~~q~i~~SAT-~~~~v~-~~~~~~~~~~ 132 (184)
+++|+||||. +++ .+|.+. +..+++.++ ..+|++++||| .+..+. .+...++.
T Consensus 141 ~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-- 218 (414)
T 3oiy_A 141 DFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-- 218 (414)
T ss_dssp SEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS--
T ss_pred cEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc--
Confidence 9999999964 455 778888 888888876 78999999999 565544 33333332
Q ss_pred eEEEEccCCccccccchhhhhcccCCCCcceeEEEEec
Q 029993 133 VRIEVRAESKSHHASASSQQLASSKTPLGLHLEVLRLN 170 (184)
Q Consensus 133 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 170 (184)
+.+... ...+.++.+.|..++
T Consensus 219 --~~~~~~---------------~~~~~~i~~~~~~~~ 239 (414)
T 3oiy_A 219 --FTVGRL---------------VSVARNITHVRISSR 239 (414)
T ss_dssp --CCSSCC---------------CCCCCSEEEEEESSC
T ss_pred --cCcCcc---------------ccccccchheeeccC
Confidence 222222 455677788877664
No 31
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.80 E-value=7.9e-19 Score=150.32 Aligned_cols=149 Identities=32% Similarity=0.437 Sum_probs=116.6
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++|+++|+.|+++.+++++... ++.+....++..... ...+++|+||||+++.+++.. +.+.++++.++
T Consensus 191 ~vLvl~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lI 263 (508)
T 3fho_A 191 QAICLAPSRELARQIMDVVTEMGKYT-EVKTAFGIKDSVPKG-----AKIDAQIVIGTPGTVMDLMKR-RQLDARDIKVF 263 (508)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHSTTS-SCCEEC---------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEE
T ss_pred eEEEEECcHHHHHHHHHHHHHhCCcc-CeeEEEEeCCccccc-----ccCCCCEEEECHHHHHHHHHc-CCccccCCCEE
Confidence 47999999999999999999997665 566666555543221 134789999999999999988 78889999999
Q ss_pred EechhhHhhc-cchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCccccccchhhhhcccCCC
Q 029993 81 VLDEADRLLD-MGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESKSHHASASSQQLASSKTP 159 (184)
Q Consensus 81 VvDEaD~l~~-~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+||||.+.+ .++...+..+.+.+++..|++++|||+++.+..+...++.++..+.+... ...+
T Consensus 264 IiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~---------------~~~~ 328 (508)
T 3fho_A 264 VLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTE---------------ELSV 328 (508)
T ss_dssp EECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCC---------------C---
T ss_pred EEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccc---------------cCCc
Confidence 9999999987 57999999999999999999999999999999999999999998887766 5556
Q ss_pred CcceeEEEEecC
Q 029993 160 LGLHLEVLRLNI 171 (184)
Q Consensus 160 ~~l~~~~~~~~~ 171 (184)
..+.+.++.+..
T Consensus 329 ~~~~~~~~~~~~ 340 (508)
T 3fho_A 329 EGIKQLYMDCQS 340 (508)
T ss_dssp -CCCCEEEEC--
T ss_pred ccceEEEEECCc
Confidence 666777776643
No 32
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.80 E-value=1.1e-19 Score=167.59 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=116.5
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcch---HHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
++||++||||||.|+++.+.+++ .. ++++..++||.+. ..+...+.++.++|+||||++|.+++.. ++++++
T Consensus 123 ~~Lil~PtreLa~Q~~~~l~~l~-~~-~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l 197 (1104)
T 4ddu_A 123 KSALVFPTVTLVKQTLERLQKLA-DE-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRF 197 (1104)
T ss_dssp CEEEEESSHHHHHHHHHHHHTTS-CT-TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCC
T ss_pred eEEEEechHHHHHHHHHHHHHhh-CC-CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCc
Confidence 48999999999999999999987 43 8999999999887 5666666554599999999999988765 678899
Q ss_pred eEEEechh----------hHhhc-cchHHH-HHHHHHhCC-----------CCceEEEEeee-CchHHH-HHHHHhCCCC
Q 029993 78 VILVLDEA----------DRLLD-MGFQKQ-ISYIISRLP-----------KLRRTGLFSAT-QTEAVE-ELSKAGLRNP 132 (184)
Q Consensus 78 ~~lVvDEa----------D~l~~-~~~~~~-l~~i~~~l~-----------~~~q~i~~SAT-~~~~v~-~~~~~~~~~~ 132 (184)
+++|+||| |+|++ .+|... +..+++.++ +.+|+++|||| .+..+. .+.+.++.
T Consensus 198 ~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-- 275 (1104)
T 4ddu_A 198 DFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-- 275 (1104)
T ss_dssp SEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC--
T ss_pred CEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee--
Confidence 99999999 56666 788888 889999887 88999999999 565544 23444433
Q ss_pred eEEEEccCCccccccchhhhhcccCCCCcceeEEEEecC
Q 029993 133 VRIEVRAESKSHHASASSQQLASSKTPLGLHLEVLRLNI 171 (184)
Q Consensus 133 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 171 (184)
+.+... ...+.++.|.|+.++.
T Consensus 276 --i~v~~~---------------~~~~~~i~~~~~~~~k 297 (1104)
T 4ddu_A 276 --FTVGRL---------------VSVARNITHVRISSRS 297 (1104)
T ss_dssp --CCCCBC---------------CCCCCCEEEEEESCCC
T ss_pred --EEeccC---------------CCCcCCceeEEEecCH
Confidence 344444 5567888888887743
No 33
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.76 E-value=7.7e-18 Score=155.41 Aligned_cols=126 Identities=22% Similarity=0.184 Sum_probs=109.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.++|++||++||.|+++.+.++.. .+..++|+... +.+++|+|+||++|.+++.. +...++++.++
T Consensus 229 rvlvl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~~--------~~~~~IlV~Tpe~L~~~L~~-~~~~l~~l~lV 294 (1108)
T 3l9o_A 229 RVIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI--------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWV 294 (1108)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTS-----SEEEECSSCBC--------CCSCSEEEEEHHHHHHHHHH-CSSHHHHEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhC-----CccEEeCcccc--------CCCCCEEEeChHHHHHHHHc-CccccccCCEE
Confidence 379999999999999999999753 56778887763 45789999999999999998 77779999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchH--HHHHHHHhCCCCeEEEEccC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA--VEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~--v~~~~~~~~~~~~~i~~~~~ 140 (184)
|+||||.+.+.+|+..+..++..+++..|++++|||+++. +..+...+..+|..+.....
T Consensus 295 VIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~ 356 (1108)
T 3l9o_A 295 IFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF 356 (1108)
T ss_dssp EEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC
T ss_pred EEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC
Confidence 9999999999999999999999999999999999999875 44666777778888776655
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.76 E-value=1.6e-19 Score=166.00 Aligned_cols=141 Identities=15% Similarity=0.180 Sum_probs=112.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCc----eEEEEECCcchHHH---HHHHHHcCCcEeeechHHHHHHHHhcCCcc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDV----KSMLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLD 73 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~----~~~~~~~~~~~~~~---~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~ 73 (184)
++||++||++||.|+++.+++++... ++ ++..++||.....+ ...+ .. ++|+||||++|.+++.+
T Consensus 101 ~~lil~PtreLa~Q~~~~l~~l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l-~~-~~IlV~TP~~L~~~l~~----- 172 (1054)
T 1gku_B 101 RCYVIFPTSLLVIQAAETIRKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNL-RN-FKIVITTTQFLSKHYRE----- 172 (1054)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSG-GG-CSEEEEEHHHHHHCSTT-----
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhc-CCCccceEEEEeCCCChhhHHHHHhhc-cC-CCEEEEcHHHHHHHHHH-----
Confidence 48999999999999999999999876 67 89999999877654 2333 34 99999999999987654
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCC-----------CCceEEEEeeeCchHHHHHHHHhCCCCeEEEEccCCc
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLP-----------KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRAESK 142 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~-----------~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~~~~ 142 (184)
+++++++|+||||.|++ +..++..++..++ ..+|.+++|||+++. ..++..+++++..+.+...
T Consensus 173 L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~-- 247 (1054)
T 1gku_B 173 LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSS-- 247 (1054)
T ss_dssp SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCC--
T ss_pred hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCc--
Confidence 67999999999999997 6788888888874 568999999999988 6666666666665555444
Q ss_pred cccccchhhhhcccCCCCcceeEEE
Q 029993 143 SHHASASSQQLASSKTPLGLHLEVL 167 (184)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~l~~~~~ 167 (184)
.....++.++|+
T Consensus 248 -------------~~~~~~i~~~~~ 259 (1054)
T 1gku_B 248 -------------RITVRNVEDVAV 259 (1054)
T ss_dssp -------------EECCCCEEEEEE
T ss_pred -------------ccCcCCceEEEe
Confidence 445566777776
No 35
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.75 E-value=4.1e-18 Score=151.48 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=97.5
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhc-----CCccC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~-----~~~~~ 74 (184)
+|+||+||||||.|+.+++..+.+++ ++++..++||.+...+. . ..+|||+||||++| .+++... +.+.+
T Consensus 126 ~vlVltptreLA~qd~e~~~~l~~~l-gl~v~~i~gg~~~~~r~--~-~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~l 201 (844)
T 1tf5_A 126 GVHVVTVNEYLASRDAEQMGKIFEFL-GLTVGLNLNSMSKDEKR--E-AYAADITYSTNNELGFDYLRDNMVLYKEQMVQ 201 (844)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTSCHHHHH--H-HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHH--H-hcCCCEEEECchhhhHHHHHHhhhcchhhhcc
Confidence 58999999999999999999999988 89999999998754432 2 24799999999999 7777651 23568
Q ss_pred CCceEEEechhhHhh-ccc---------------hHHHHHHHHHhCC---------CCceEE-----------------E
Q 029993 75 RNLVILVLDEADRLL-DMG---------------FQKQISYIISRLP---------KLRRTG-----------------L 112 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~-~~~---------------~~~~l~~i~~~l~---------~~~q~i-----------------~ 112 (184)
+.++++|+||||.|+ +.+ |...+..|++.++ +.+|+. +
T Consensus 202 r~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~L 281 (844)
T 1tf5_A 202 RPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNL 281 (844)
T ss_dssp CCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCT
T ss_pred cCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCcccc
Confidence 999999999999998 553 7789999999997 478888 9
Q ss_pred EeeeCchH
Q 029993 113 FSATQTEA 120 (184)
Q Consensus 113 ~SAT~~~~ 120 (184)
||||++..
T Consensus 282 fsat~~~~ 289 (844)
T 1tf5_A 282 FDVKHVAL 289 (844)
T ss_dssp TSGGGHHH
T ss_pred CCCccchh
Confidence 99998743
No 36
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.74 E-value=4.9e-18 Score=150.82 Aligned_cols=102 Identities=21% Similarity=0.256 Sum_probs=73.6
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhcC-----CccC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD-----VLDF 74 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~~-----~~~~ 74 (184)
+|+|++||||||.|+++++..+.+++ ++++..++||.+... +.+ ..+|||+||||++| .+++...- ...+
T Consensus 117 ~vlVltPTreLA~Q~~e~~~~l~~~l-gl~v~~i~GG~~~~~--r~~-~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~ 192 (853)
T 2fsf_A 117 GVHVVTVNDYLAQRDAENNRPLFEFL-GLTVGINLPGMPAPA--KRE-AYAADITYGTNNEYGFDYLRDNMAFSPEERVQ 192 (853)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTCCHHH--HHH-HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred cEEEEcCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCCCHHH--HHH-hcCCCEEEECCchhhHHHHHhhhhccHhHhcc
Confidence 58999999999999999999999998 899999999987543 233 24799999999999 78887621 2568
Q ss_pred CCceEEEechhhHhh-cc---------------chHHHHHHHHHhCCC
Q 029993 75 RNLVILVLDEADRLL-DM---------------GFQKQISYIISRLPK 106 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~-~~---------------~~~~~l~~i~~~l~~ 106 (184)
++++++|+||||.|+ +. +|...+..|++.+++
T Consensus 193 ~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 193 RKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp CSCCEEEESCHHHHTTTTTTCEEEEEEC--------------------
T ss_pred cCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchh
Confidence 999999999999999 43 367888999999975
No 37
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.7e-16 Score=145.37 Aligned_cols=125 Identities=22% Similarity=0.197 Sum_probs=105.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++|+.|+++.+.++.+ ++..++|+... +.+++|+|+||++|.+++.+ +...++++.++
T Consensus 131 rvL~l~PtkaLa~Q~~~~l~~~~~-----~vglltGd~~~--------~~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lV 196 (1010)
T 2xgj_A 131 RVIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI--------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWV 196 (1010)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHS-----CEEEECSSCEE--------CTTCSEEEEEHHHHHHHHHH-TCTTGGGEEEE
T ss_pred eEEEECChHHHHHHHHHHHHHHhC-----CEEEEeCCCcc--------CCCCCEEEEcHHHHHHHHHc-CcchhhcCCEE
Confidence 379999999999999999998764 57778887764 24689999999999999988 77789999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHH---hCCCCeEEEEccC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA---GLRNPVRIEVRAE 140 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~---~~~~~~~i~~~~~ 140 (184)
|+||||.+.+.+++..+..++..+++..|++++|||+++. ..++.+ ..++|..+.....
T Consensus 197 ViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~-~e~a~~l~~~~~~~~~vi~~~~ 258 (1010)
T 2xgj_A 197 IFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNA-MEFAEWICKIHSQPCHIVYTNF 258 (1010)
T ss_dssp EEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTH-HHHHHHHHHHHTSCEEEEEECC
T ss_pred EEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCH-HHHHHHHHhhcCCCeEEEecCC
Confidence 9999999999888999999999999999999999999875 344444 3466777766554
No 38
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.72 E-value=3.1e-17 Score=146.24 Aligned_cols=116 Identities=16% Similarity=0.245 Sum_probs=98.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhc-----CCccC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERM-----DVLDF 74 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~-----~~~~~ 74 (184)
+|+|++||++||.|+.+++..+.+++ ++++.+++||.+...+ .. ..+|||++|||++| .+++... +.+.+
T Consensus 154 ~v~VvTpTreLA~Qdae~m~~l~~~l-GLsv~~i~gg~~~~~r--~~-~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~l 229 (922)
T 1nkt_A 154 GVHIVTVNDYLAKRDSEWMGRVHRFL-GLQVGVILATMTPDER--RV-AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQ 229 (922)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCTTCCHHHH--HH-HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHH--HH-hcCCCEEEECchHhhHHHHHhhhhccHhhhcc
Confidence 58999999999999999999999998 8999999999875433 22 24699999999999 7888762 24668
Q ss_pred CCceEEEechhhHhh-c---------------cchHHHHHHHHHhCC---------CCceEE-----------------E
Q 029993 75 RNLVILVLDEADRLL-D---------------MGFQKQISYIISRLP---------KLRRTG-----------------L 112 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~-~---------------~~~~~~l~~i~~~l~---------~~~q~i-----------------~ 112 (184)
+.+.++|+||||.|+ + ++|...+..|++.++ +.+|+. +
T Consensus 230 r~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~L 309 (922)
T 1nkt_A 230 RGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNL 309 (922)
T ss_dssp CCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSST
T ss_pred CCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccc
Confidence 899999999999999 3 358899999999998 788999 9
Q ss_pred EeeeCchH
Q 029993 113 FSATQTEA 120 (184)
Q Consensus 113 ~SAT~~~~ 120 (184)
||||.+..
T Consensus 310 fsat~~~l 317 (922)
T 1nkt_A 310 YEAANSPL 317 (922)
T ss_dssp TCSTTCCH
T ss_pred cCCcchhH
Confidence 99998753
No 39
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.71 E-value=8.7e-17 Score=124.64 Aligned_cols=119 Identities=16% Similarity=0.177 Sum_probs=88.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+++++|++++|.|+.+.+........+..+......... ....+++|+||||+++.+++.. .+++++++|
T Consensus 112 ~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lV 181 (235)
T 3llm_A 112 IVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESI------LPRPHASIMFCTVGVLLRKLEA----GIRGISHVI 181 (235)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEE------CCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEE
T ss_pred EEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhc------cCCCCCeEEEECHHHHHHHHHh----hhcCCcEEE
Confidence 688999999999998888765443223444332222211 0024689999999999999876 389999999
Q ss_pred echhhHh-hccchH-HHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCe
Q 029993 82 LDEADRL-LDMGFQ-KQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPV 133 (184)
Q Consensus 82 vDEaD~l-~~~~~~-~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~ 133 (184)
+||||.+ ++.+|. ..++.++... ++.|++++|||++.+. +.+.+.++|+
T Consensus 182 lDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 182 VDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp ECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred EECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 9999996 777777 5677777766 4699999999999876 6776666665
No 40
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.68 E-value=1.3e-16 Score=136.28 Aligned_cols=116 Identities=13% Similarity=0.172 Sum_probs=94.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCc-cCCCceE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLVI 79 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~-~~~~l~~ 79 (184)
.+||++||++|+.|+++.+.+++... ++++..++|+.....+...+. .+++|+|+||+++..++.. +.+ .++++.+
T Consensus 54 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~~ 130 (555)
T 3tbk_A 54 KVVFFANQIPVYEQQATVFSRYFERL-GYNIASISGATSDSVSVQHII-EDNDIIILTPQILVNNLNN-GAIPSLSVFTL 130 (555)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECTTTGGGSCHHHHH-HHCSEEEECHHHHHHHHHT-SSSCCGGGCSE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHhccC-CcEEEEEcCCCcchhhHHHHh-cCCCEEEECHHHHHHHHhc-CcccccccCCE
Confidence 37999999999999999999998876 899999999987665555553 4799999999999999988 666 7999999
Q ss_pred EEechhhHhhccc-hHHHHHHHHHhC-----CCCceEEEEeeeCch
Q 029993 80 LVLDEADRLLDMG-FQKQISYIISRL-----PKLRRTGLFSATQTE 119 (184)
Q Consensus 80 lVvDEaD~l~~~~-~~~~l~~i~~~l-----~~~~q~i~~SAT~~~ 119 (184)
+|+||||.+.+.+ +...+...+... +...|++++|||++.
T Consensus 131 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 131 MIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp EEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCC
T ss_pred EEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCccc
Confidence 9999999998764 444444444432 245799999999954
No 41
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.68 E-value=1.3e-16 Score=136.48 Aligned_cols=115 Identities=13% Similarity=0.149 Sum_probs=88.5
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCc-cCCCceE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLVI 79 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~-~~~~l~~ 79 (184)
.+||++||++|+.|+++.+.+++... ++++..++|+.....+...+. .+++|+|+||++|.+++.. +.+ .++++++
T Consensus 57 ~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~~ 133 (556)
T 4a2p_A 57 KVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKVI-EDSDIIVVTPQILVNSFED-GTLTSLSIFTL 133 (556)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEECCCC-----CHHHHH-HHCSEEEECHHHHHHHHHS-SSCCCSTTCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEeCCCCcchhHHHhh-CCCCEEEECHHHHHHHHHh-CcccccccCCE
Confidence 37999999999999999999998876 789999999887666655553 4799999999999999988 666 7999999
Q ss_pred EEechhhHhhccchHHHH-HHHHHh----CCCCceEEEEeeeCc
Q 029993 80 LVLDEADRLLDMGFQKQI-SYIISR----LPKLRRTGLFSATQT 118 (184)
Q Consensus 80 lVvDEaD~l~~~~~~~~l-~~i~~~----l~~~~q~i~~SAT~~ 118 (184)
+|+||||.+.+.+....+ ...+.. .++..|++++|||++
T Consensus 134 vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 134 MIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 177 (556)
T ss_dssp EEEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCC
T ss_pred EEEECCcccCCcchHHHHHHHHHHhhhcccCCCCeEEEEeCCcc
Confidence 999999999876533333 233322 145689999999995
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.65 E-value=5e-16 Score=142.18 Aligned_cols=115 Identities=25% Similarity=0.246 Sum_probs=99.6
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
++|++||++|+.|+++.+.++. +++++..++|+... +..++|+|+||++|.+++.. +...++++.++|
T Consensus 85 vlvl~PtraLa~Q~~~~l~~~~---~~~~v~~l~G~~~~--------~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvV 152 (997)
T 4a4z_A 85 TIYTSPIKALSNQKFRDFKETF---DDVNIGLITGDVQI--------NPDANCLIMTTEILRSMLYR-GADLIRDVEFVI 152 (997)
T ss_dssp EEEEESCGGGHHHHHHHHHTTC-----CCEEEECSSCEE--------CTTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHc---CCCeEEEEeCCCcc--------CCCCCEEEECHHHHHHHHHh-CchhhcCCCEEE
Confidence 7999999999999999988864 36788899988763 34689999999999999988 777889999999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhC
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~ 129 (184)
+||||.+.+.++...+..++..+++..|++++|||+++.. .++.++.
T Consensus 153 iDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~~-ef~~~l~ 199 (997)
T 4a4z_A 153 FDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTY-EFANWIG 199 (997)
T ss_dssp ECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTHH-HHHHHHH
T ss_pred EECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCChH-HHHHHHh
Confidence 9999999998899999999999999999999999998764 6666654
No 43
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.64 E-value=2.2e-15 Score=135.20 Aligned_cols=115 Identities=13% Similarity=0.171 Sum_probs=90.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCc-cCCCceE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLVI 79 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~-~~~~l~~ 79 (184)
.+|||+||++|+.|+++.+.+++... ++++..++|+.....+...+ ..+++|+|+||++|.+++.. +.+ .++++++
T Consensus 298 ~~Lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~-~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~~ 374 (797)
T 4a2q_A 298 KVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKV-IEDSDIIVVTPQILVNSFED-GTLTSLSIFTL 374 (797)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECCC-----CHHHH-HHTCSEEEECHHHHHHHHHS-SSCCCGGGCSE
T ss_pred eEEEEeCCHHHHHHHHHHHHHhcccC-CceEEEEeCCcchhhhHHHh-hCCCCEEEEchHHHHHHHHh-ccccccccCCE
Confidence 37999999999999999999998876 79999999998766665555 35899999999999999987 666 7999999
Q ss_pred EEechhhHhhccc-hHHHHHHHHHhC----CCCceEEEEeeeCc
Q 029993 80 LVLDEADRLLDMG-FQKQISYIISRL----PKLRRTGLFSATQT 118 (184)
Q Consensus 80 lVvDEaD~l~~~~-~~~~l~~i~~~l----~~~~q~i~~SAT~~ 118 (184)
+|+||||.+.+.+ +...+...+... .+..|++++|||++
T Consensus 375 iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 375 MIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp EEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCC
T ss_pred EEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCcc
Confidence 9999999988764 333333333331 55689999999995
No 44
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.64 E-value=4.4e-16 Score=118.00 Aligned_cols=113 Identities=14% Similarity=0.213 Sum_probs=77.1
Q ss_pred CEEEEeccHHHHHH-HHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcC-----CccC
Q 029993 1 MGMIISPTRELSAQ-IYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD-----VLDF 74 (184)
Q Consensus 1 ~alIl~PtreLa~Q-i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~-----~~~~ 74 (184)
.+||++||++|+.| +.+.+.++... ++++..+.|+.........+. .+++|+|+||+++..++.... ...+
T Consensus 84 ~~lil~p~~~L~~q~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~ 160 (216)
T 3b6e_A 84 KVIVLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEVV-KSCDIIISTAQILENSLLNLENGEDAGVQL 160 (216)
T ss_dssp CEEEEESSHHHHHHHHHHTHHHHHTT--TSCEEECCC---CCCCHHHHH-HHCSEEEEEHHHHHHHHHC-------CCCG
T ss_pred cEEEEECHHHHHHHHHHHHHHHHhcc--CceEEEEeCCcccchhHHhhc-cCCCEEEECHHHHHHHHhccCcccccccch
Confidence 37999999999999 88889888754 578888888766544444443 468999999999999887622 1668
Q ss_pred CCceEEEechhhHhhccchHHHHH-HHHHhC-------------CCCceEEEEeee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQIS-YIISRL-------------PKLRRTGLFSAT 116 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~-~i~~~l-------------~~~~q~i~~SAT 116 (184)
.++.++|+||||.+.+.++...+. .++... .+..+++++|||
T Consensus 161 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 161 SDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp GGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred hcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 899999999999998765555443 332222 156899999998
No 45
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.64 E-value=2.3e-15 Score=132.69 Aligned_cols=114 Identities=12% Similarity=0.172 Sum_probs=91.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCc-cCCCceEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLVIL 80 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~-~~~~l~~l 80 (184)
+||++||++|+.|+.+.+.+++... ++++..++|+.....+...+. .+++|+|+||++|.+.+.. +.+ .++++.++
T Consensus 64 ~lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~L~~~l~~-~~~~~l~~~~~v 140 (696)
T 2ykg_A 64 VVFFANQIPVYEQNKSVFSKYFERH-GYRVTGISGATAENVPVEQIV-ENNDIIILTPQILVNNLKK-GTIPSLSIFTLM 140 (696)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCSSSCHHHHH-HTCSEEEECHHHHHHHHHT-TSSCCGGGCSEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhccC-CceEEEEeCCccccccHHHhc-cCCCEEEECHHHHHHHHhc-CcccccccccEE
Confidence 7999999999999999999998755 789999999876555555553 4799999999999999988 666 79999999
Q ss_pred EechhhHhhccc-hHHHHHHHHHh-----CCCCceEEEEeeeCc
Q 029993 81 VLDEADRLLDMG-FQKQISYIISR-----LPKLRRTGLFSATQT 118 (184)
Q Consensus 81 VvDEaD~l~~~~-~~~~l~~i~~~-----l~~~~q~i~~SAT~~ 118 (184)
|+||||.+.+.. +...+...+.. .++..|++++|||+.
T Consensus 141 ViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 141 IFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred EEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 999999987543 33333333332 246789999999986
No 46
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.61 E-value=5.6e-15 Score=123.21 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=97.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++|+.|+.+.+.++.+ .++.++..+.|+.......... .+++|+|+||+++...+.. +.+.+.++.++
T Consensus 54 ~~liv~P~~~L~~q~~~~~~~~~~-~~~~~v~~~~g~~~~~~~~~~~--~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~v 129 (494)
T 1wp9_A 54 KVLMLAPTKPLVLQHAESFRRLFN-LPPEKIVALTGEKSPEERSKAW--ARAKVIVATPQTIENDLLA-GRISLEDVSLI 129 (494)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHBC-SCGGGEEEECSCSCHHHHHHHH--HHCSEEEECHHHHHHHHHT-TSCCTTSCSEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhC-cchhheEEeeCCcchhhhhhhc--cCCCEEEecHHHHHHHHhc-CCcchhhceEE
Confidence 379999999999999999999863 2456888888887765443333 4689999999999999887 77889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchH---HHHHHHHh
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA---VEELSKAG 128 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~---v~~~~~~~ 128 (184)
|+||||.+.+......+...+....+..+++++|||+... +..+....
T Consensus 130 IiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l 180 (494)
T 1wp9_A 130 VFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNL 180 (494)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHHHT
T ss_pred EEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCCCCcHHHHHHHHhc
Confidence 9999999986655555666666667789999999999743 44455444
No 47
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.61 E-value=1.6e-15 Score=134.64 Aligned_cols=119 Identities=17% Similarity=0.195 Sum_probs=100.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
++|++|+++||.|+++.++++... ++++..++|+...... . ..+++|+|+||+++..++.. +...+++++++|
T Consensus 71 ~l~i~P~raLa~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~--~--~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vI 143 (720)
T 2zj8_A 71 AVYIVPLKALAEEKFQEFQDWEKI--GLRVAMATGDYDSKDE--W--LGKYDIIIATAEKFDSLLRH-GSSWIKDVKILV 143 (720)
T ss_dssp EEEECSSGGGHHHHHHHTGGGGGG--TCCEEEECSCSSCCCG--G--GGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhc--CCEEEEecCCCCcccc--c--cCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEE
Confidence 799999999999999999776543 7899999987654332 1 24789999999999999988 666689999999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHh
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAG 128 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~ 128 (184)
+||||.+.+.++...+..++..+++..|++++|||+++ ...+++++
T Consensus 144 iDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l 189 (720)
T 2zj8_A 144 ADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWL 189 (720)
T ss_dssp EETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHT
T ss_pred EECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHh
Confidence 99999998878899999999998878999999999986 36666654
No 48
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.61 E-value=2.6e-15 Score=132.98 Aligned_cols=121 Identities=16% Similarity=0.222 Sum_probs=98.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+++++|+|+||.|+++.++++.. . ++++...+|+...... . ..+++|+|+||+++..++.+ +...+++++++
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~--~--~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~v 142 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKWEK-I-GLRIGISTGDYESRDE--H--LGDCDIIVTTSEKADSLIRN-RASWIKAVSCL 142 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTTT-T-TCCEEEECSSCBCCSS--C--STTCSEEEEEHHHHHHHHHT-TCSGGGGCCEE
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHh-c-CCEEEEEeCCCCcchh--h--ccCCCEEEECHHHHHHHHHc-ChhHHhhcCEE
Confidence 479999999999999999976543 3 7899999988764332 1 14789999999999999887 66668999999
Q ss_pred EechhhHhhccchHHHHHHHHHhC---CCCceEEEEeeeCchHHHHHHHHhC
Q 029993 81 VLDEADRLLDMGFQKQISYIISRL---PKLRRTGLFSATQTEAVEELSKAGL 129 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l---~~~~q~i~~SAT~~~~v~~~~~~~~ 129 (184)
|+||||.+.+.++...+..++..+ +++.|++++|||+++ ...+++++.
T Consensus 143 IiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~ 193 (702)
T 2p6r_A 143 VVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLD 193 (702)
T ss_dssp EETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTT
T ss_pred EEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhC
Confidence 999999998877888777776665 578999999999986 466776543
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.59 E-value=6.2e-15 Score=129.30 Aligned_cols=103 Identities=14% Similarity=0.095 Sum_probs=85.3
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
++||++||||||.|+++.+.+.. +.++...+|+.. ...+++|+|+||++| +.. +.+++++++++
T Consensus 259 ~vLVl~PTReLA~Qia~~l~~~~----g~~vg~~vG~~~--------~~~~~~IlV~TPGrL---l~~-~~l~l~~l~~l 322 (666)
T 3o8b_A 259 KVLVLNPSVAATLGFGAYMSKAH----GIDPNIRTGVRT--------ITTGAPVTYSTYGKF---LAD-GGCSGGAYDII 322 (666)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHH----SCCCEEECSSCE--------ECCCCSEEEEEHHHH---HHT-TSCCTTSCSEE
T ss_pred eEEEEcchHHHHHHHHHHHHHHh----CCCeeEEECcEe--------ccCCCCEEEECcHHH---HhC-CCcccCcccEE
Confidence 58999999999999988776654 345666677654 146899999999997 344 77889999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCce--EEEEeeeCchH
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRR--TGLFSATQTEA 120 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q--~i~~SAT~~~~ 120 (184)
|+||| ++++.+|...+..+++.++..+| .+++|||++..
T Consensus 323 VlDEA-H~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 323 ICDEC-HSTDSTTILGIGTVLDQAETAGARLVVLATATPPGS 363 (666)
T ss_dssp EETTT-TCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC
T ss_pred EEccc-hhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcc
Confidence 99999 56788899999999999998877 67779999985
No 50
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.58 E-value=5.4e-15 Score=131.05 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=98.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+++++|+|+||.|+++.++.+.. . ++++...+|+...... .+ .+++|+|+||+++..++.. +...+++++++|
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~--~~--~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vI 150 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWEL-I-GFKVAMTSGDYDTDDA--WL--KNYDIIITTYEKLDSLWRH-RPEWLNEVNYFV 150 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGG-G-TCCEEECCSCSSSCCG--GG--GGCSEEEECHHHHHHHHHH-CCGGGGGEEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHhhc-C-CCEEEEEeCCCCCchh--hc--CCCCEEEEcHHHHHHHHhC-ChhHhhccCEEE
Confidence 79999999999999999976644 3 7889888887654332 12 3789999999999999988 666689999999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhC
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGL 129 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~ 129 (184)
+||||.+.+.++...+..++.+++ +.|++++|||+++. ..+++++-
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~l~ 196 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAKWLG 196 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHHHT
T ss_pred EechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHHhC
Confidence 999999887788889999888887 79999999999863 66776653
No 51
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.58 E-value=1.1e-14 Score=132.77 Aligned_cols=114 Identities=13% Similarity=0.176 Sum_probs=89.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCc-cCCCceEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVL-DFRNLVIL 80 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~-~~~~l~~l 80 (184)
+|||+||++|+.|+++.+.++++.. ++++..++|+.....+...+. .+++|+|+||++|.+++.. +.+ .++++.++
T Consensus 299 vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~G~~~~~~~~~~~~-~~~~IvI~Tp~~L~~~l~~-~~~~~l~~~~li 375 (936)
T 4a2w_A 299 VVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKVI-EDSDIIVVTPQILVNSFED-GTLTSLSIFTLM 375 (936)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECCC-----CCHHHH-HHCSEEEECHHHHHHHHHS-SSCCCGGGCSEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEECCcchhhHHHHhc-cCCCEEEecHHHHHHHHHc-CccccccCCCEE
Confidence 7999999999999999999998876 899999999987665555553 4789999999999999987 656 78999999
Q ss_pred EechhhHhhccc-hHHHHHHHHHhC----CCCceEEEEeeeCc
Q 029993 81 VLDEADRLLDMG-FQKQISYIISRL----PKLRRTGLFSATQT 118 (184)
Q Consensus 81 VvDEaD~l~~~~-~~~~l~~i~~~l----~~~~q~i~~SAT~~ 118 (184)
|+||||.+...+ +...+...+... ++..|++++|||++
T Consensus 376 ViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 376 IFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCC
T ss_pred EEECccccCCCccHHHHHHHHHHHhhccCCCcCeEEEecCCcc
Confidence 999999988663 444443444332 45689999999995
No 52
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.57 E-value=1.1e-14 Score=126.74 Aligned_cols=130 Identities=17% Similarity=0.140 Sum_probs=96.6
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHH-----HHcCCcEeeechHHHH---HHHHh-cCCc
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI-----EEEGANLLIGTPGRLY---DIMER-MDVL 72 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~IlV~TP~~l~---~~~~~-~~~~ 72 (184)
+|||+|+++|+.|+.+.+.++ ++++..+.|+....+..... ...+++|+|+||++|. .++.. .+..
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~ 161 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAY 161 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhh
Confidence 799999999999999999887 57788888887655443322 1357999999999874 22221 0234
Q ss_pred cCCCceEEEechhhHhhccc--hHHHHHH--HHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEE
Q 029993 73 DFRNLVILVLDEADRLLDMG--FQKQISY--IISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIE 136 (184)
Q Consensus 73 ~~~~l~~lVvDEaD~l~~~~--~~~~l~~--i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~ 136 (184)
.+.++.++|+||||.+.+.+ |.+.+.. ++....+..|++++|||+++.+...+..++..+..+.
T Consensus 162 ~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~ 229 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFT 229 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEE
T ss_pred hccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEE
Confidence 57889999999999998755 6666554 3444445799999999999999888888887554333
No 53
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.57 E-value=2.4e-14 Score=136.75 Aligned_cols=124 Identities=19% Similarity=0.233 Sum_probs=93.7
Q ss_pred EEEEeccHHHHHHHHHHHHHh-hhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcC-CccCCCceE
Q 029993 2 GMIISPTRELSAQIYHVAQPF-ISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMD-VLDFRNLVI 79 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~-~~~~~~l~~ 79 (184)
||+++|+|+||.|+++.+.+. +... ++++..++|+...+.. .+ .+++|+|+||+++..++++.. .-.++++++
T Consensus 975 avyi~P~raLa~q~~~~~~~~f~~~~-g~~V~~ltGd~~~~~~--~~--~~~~IiV~TPEkld~llr~~~~~~~l~~v~l 1049 (1724)
T 4f92_B 975 CVYITPMEALAEQVYMDWYEKFQDRL-NKKVVLLTGETSTDLK--LL--GKGNIIISTPEKWDILSRRWKQRKNVQNINL 1049 (1724)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTTTS-CCCEEECCSCHHHHHH--HH--HHCSEEEECHHHHHHHHTTTTTCHHHHSCSE
T ss_pred EEEEcChHHHHHHHHHHHHHHhchhc-CCEEEEEECCCCcchh--hc--CCCCEEEECHHHHHHHHhCcccccccceeeE
Confidence 799999999999999998764 4444 7899998887654322 22 468999999999988876522 224789999
Q ss_pred EEechhhHhhccchHHHHHHHH-------HhCCCCceEEEEeeeCchHHHHHHHHhCCCC
Q 029993 80 LVLDEADRLLDMGFQKQISYII-------SRLPKLRRTGLFSATQTEAVEELSKAGLRNP 132 (184)
Q Consensus 80 lVvDEaD~l~~~~~~~~l~~i~-------~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~ 132 (184)
+|+||+|.+.+ ..+..+..++ .+.++..|++++|||+++. .++++|.-.++
T Consensus 1050 vViDE~H~l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~ 1107 (1724)
T 4f92_B 1050 FVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSA 1107 (1724)
T ss_dssp EEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCS
T ss_pred EEeechhhcCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCC
Confidence 99999997765 3555555444 3456789999999999864 78888865443
No 54
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.56 E-value=2.5e-14 Score=132.62 Aligned_cols=125 Identities=20% Similarity=0.247 Sum_probs=98.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH---HHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
+++|++||++||.|+++.+.+....+ ++++..++|.....+. ...+.++.++|+||||+.+. +.+.++++
T Consensus 654 ~vlvlvPt~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l 726 (1151)
T 2eyq_A 654 QVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDL 726 (1151)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSE
T ss_pred eEEEEechHHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCcccccc
Confidence 48999999999999999999887766 6888888876554433 33444456999999997552 56789999
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEE
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEV 137 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~ 137 (184)
.++|+||+|++ ......+++.++..+|++++|||++++...+....++++..+..
T Consensus 727 ~lvIiDEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~ 781 (1151)
T 2eyq_A 727 GLLIVDEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 781 (1151)
T ss_dssp EEEEEESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCC
T ss_pred ceEEEechHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEec
Confidence 99999999994 33445667777788999999999999888888888877665543
No 55
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.54 E-value=2.1e-14 Score=137.16 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=94.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCC-ccCCCceEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVIL 80 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~-~~~~~l~~l 80 (184)
||+++|+|+||.|+++.+.+..+.+ +++|..++|+.....+. ..+++|+|+||+++..++++... -.+++++++
T Consensus 137 ~lyiaP~kALa~e~~~~l~~~~~~~-gi~V~~~tGd~~~~~~~----~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~v 211 (1724)
T 4f92_B 137 IIYIAPMRSLVQEMVGSFGKRLATY-GITVAELTGDHQLCKEE----ISATQIIVCTPEKWDIITRKGGERTYTQLVRLI 211 (1724)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTT-TCCEEECCSSCSSCCTT----GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHHHhhC-CCEEEEEECCCCCCccc----cCCCCEEEECHHHHHHHHcCCccchhhcCcCEE
Confidence 7999999999999999999887777 89999999987643321 25789999999998777655111 137899999
Q ss_pred EechhhHhhccchHHHHHHHHH-------hCCCCceEEEEeeeCchHHHHHHHHhCCC
Q 029993 81 VLDEADRLLDMGFQKQISYIIS-------RLPKLRRTGLFSATQTEAVEELSKAGLRN 131 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~-------~l~~~~q~i~~SAT~~~~v~~~~~~~~~~ 131 (184)
|+||+|.+- .+.+..+..++. .+++..|++++|||+++ .+++++|.-.+
T Consensus 212 IiDEvH~l~-d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~ 267 (1724)
T 4f92_B 212 ILDEIHLLH-DDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVD 267 (1724)
T ss_dssp EETTGGGGG-STTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCC
T ss_pred EEecchhcC-CccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCC
Confidence 999999654 356666655443 45678999999999986 47777765433
No 56
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.53 E-value=3.5e-15 Score=118.42 Aligned_cols=107 Identities=21% Similarity=0.157 Sum_probs=84.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+||++||++|+.|+.+.+.+++.. +..++..+.||..... . ...+++|+|+||+++... ....++++.++|
T Consensus 160 ~lil~Pt~~L~~q~~~~l~~~~~~-~~~~~~~~~~~~~~~~---~-~~~~~~I~v~T~~~l~~~----~~~~~~~~~~vI 230 (282)
T 1rif_A 160 ILIIVPTTALTTQMADDFVDYRLF-SHAMIKKIGGGASKDD---K-YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMM 230 (282)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTSC-CGGGEEECSTTCSSTT---C-CCTTCSEEEECHHHHTTS----CGGGGGGEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHhccc-ccceEEEEeCCCcchh---h-hccCCcEEEEchHHHHhh----HHHHHhhCCEEE
Confidence 799999999999999999998653 3677778777765322 1 125689999999877542 334578899999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHH
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v 121 (184)
+||||.+.+ ..+..+++.+++.+|++++|||+++..
T Consensus 231 iDEaH~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 231 NDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp EETGGGCCH----HHHHHHTTTCTTCCEEEEECSSCCTTS
T ss_pred EECCccCCc----ccHHHHHHHhhcCCeEEEEeCCCCCcc
Confidence 999999864 477788888888899999999998653
No 57
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.52 E-value=3.1e-14 Score=127.24 Aligned_cols=114 Identities=21% Similarity=0.276 Sum_probs=86.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
+++|++||++||.|+++.+.++.... ++++..++|+....+.. ..+.++.++|+||||+.+.+ .+.++++
T Consensus 419 qvlvlaPtr~La~Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l 491 (780)
T 1gm5_A 419 QTAFMVPTSILAIQHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNL 491 (780)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCC
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCC
Confidence 58999999999999999999998766 79999999998765433 33444569999999987643 5678999
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHH
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
.++|+||+|++.. . -...+......+|++++|||++++...+..
T Consensus 492 ~lVVIDEaHr~g~---~--qr~~l~~~~~~~~vL~mSATp~p~tl~~~~ 535 (780)
T 1gm5_A 492 GLVIIDEQHRFGV---K--QREALMNKGKMVDTLVMSATPIPRSMALAF 535 (780)
T ss_dssp CEEEEESCCCC----------CCCCSSSSCCCEEEEESSCCCHHHHHHH
T ss_pred ceEEecccchhhH---H--HHHHHHHhCCCCCEEEEeCCCCHHHHHHHH
Confidence 9999999998621 1 122333444578999999999887665443
No 58
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.48 E-value=2.3e-14 Score=126.29 Aligned_cols=114 Identities=13% Similarity=0.203 Sum_probs=84.1
Q ss_pred EEEEeccHHHHHHH-HHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHH------hcCCccC
Q 029993 2 GMIISPTRELSAQI-YHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIME------RMDVLDF 74 (184)
Q Consensus 2 alIl~PtreLa~Qi-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~------~~~~~~~ 74 (184)
+||++||++|+.|+ .+.+.++++. ++++..++|+.........+ ..+++|+|+||++|...+. . +.+.+
T Consensus 59 vlvl~P~~~L~~Q~~~~~l~~~~~~--~~~v~~~~g~~~~~~~~~~~-~~~~~Ilv~Tp~~L~~~l~~~~~~~~-~~~~~ 134 (699)
T 4gl2_A 59 VIVLVNKVLLVEQLFRKEFQPFLKK--WYRVIGLSGDTQLKISFPEV-VKSCDIIISTAQILENSLLNLENGED-AGVQL 134 (699)
T ss_dssp BCCEESCSHHHHHHHHHTHHHHHTT--TSCEEEEC----CCCCHHHH-HHSCSEEEEEHHHHHHHTC---------CCCG
T ss_pred EEEEECCHHHHHHHHHHHHHHHcCc--CceEEEEeCCcchhhHHHhh-hcCCCEEEECHHHHHHHHhccccccc-cceec
Confidence 68999999999999 9999999764 48899999987765554554 3689999999999999883 3 55788
Q ss_pred CCceEEEechhhHhhccc-hHHHHHHHHHh----C---------CCCceEEEEeeeCch
Q 029993 75 RNLVILVLDEADRLLDMG-FQKQISYIISR----L---------PKLRRTGLFSATQTE 119 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~-~~~~l~~i~~~----l---------~~~~q~i~~SAT~~~ 119 (184)
.++.++|+||||++...+ +...+...+.. . .+..|++++|||++.
T Consensus 135 ~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 135 SDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp GGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred ccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccc
Confidence 999999999999986543 33333333222 1 156899999999986
No 59
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.46 E-value=2.4e-13 Score=116.77 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=91.1
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||++|+++|+.|+.+.+.++ ++++..+.|+....+.. ..+..+.++|+++||+++...... ..+...++.
T Consensus 68 ~lvi~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~ 141 (523)
T 1oyw_A 68 TVVVSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPV 141 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEE
T ss_pred EEEECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCC
Confidence 689999999999999988875 56778888876654432 334456799999999999632221 224457899
Q ss_pred EEEechhhHhhccc--hHHHHH---HHHHhCCCCceEEEEeeeCchHHHH-HHHHh-CCCCeEE
Q 029993 79 ILVLDEADRLLDMG--FQKQIS---YIISRLPKLRRTGLFSATQTEAVEE-LSKAG-LRNPVRI 135 (184)
Q Consensus 79 ~lVvDEaD~l~~~~--~~~~l~---~i~~~l~~~~q~i~~SAT~~~~v~~-~~~~~-~~~~~~i 135 (184)
++|+||||.+.+.+ |...+. .+.+.+| +.+++++|||.++.+.. +.+.. +.+|..+
T Consensus 142 ~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 204 (523)
T 1oyw_A 142 LLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQ 204 (523)
T ss_dssp EEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEE
T ss_pred EEEEeCccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE
Confidence 99999999997654 655544 3455554 58999999999998765 33333 3456544
No 60
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.46 E-value=5e-14 Score=120.02 Aligned_cols=108 Identities=20% Similarity=0.172 Sum_probs=87.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+|||+||++|+.|+++.+.+++. .++.++..+.|+....++ + ..+++|+||||+.+.. . ....++++.++
T Consensus 159 ~vlvl~P~~~L~~Q~~~~~~~~~~-~~~~~v~~~~~~~~~~~~---~-~~~~~I~i~T~~~l~~---~-~~~~~~~~~li 229 (510)
T 2oca_A 159 KILIIVPTTALTTQMADDFVDYRL-FSHAMIKKIGGGASKDDK---Y-KNDAPVVVGTWQTVVK---Q-PKEWFSQFGMM 229 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTS-SCGGGEEECGGGCCTTGG---G-CTTCSEEEEEHHHHTT---S-CGGGGGGEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHhhc-CCccceEEEecCCccccc---c-ccCCcEEEEeHHHHhh---c-hhhhhhcCCEE
Confidence 379999999999999999998854 346788888888765443 2 4679999999997653 2 44568899999
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchHH
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEAV 121 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v 121 (184)
|+||||.+.. .....+++.+++..+++++|||++...
T Consensus 230 IiDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~ 266 (510)
T 2oca_A 230 MNDECHLATG----KSISSIISGLNNCMFKFGLSGSLRDGK 266 (510)
T ss_dssp EEETGGGCCH----HHHHHHGGGCTTCCEEEEEESCGGGCS
T ss_pred EEECCcCCCc----ccHHHHHHhcccCcEEEEEEeCCCCCc
Confidence 9999999864 457778888988899999999997664
No 61
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.46 E-value=2.4e-13 Score=121.41 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=72.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH-HHHHHhcC-----CccC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL-YDIMERMD-----VLDF 74 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~~-----~~~~ 74 (184)
+|+|++||++||.|+++++..+..++ ++++..++||.+.... .. ..++||+||||++| .+++...- .+.+
T Consensus 122 qv~VvTPTreLA~Qdae~m~~l~~~l-GLsv~~i~Gg~~~~~r--~~-ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~ 197 (997)
T 2ipc_A 122 GVHVVTVNDYLARRDAEWMGPVYRGL-GLSVGVIQHASTPAER--RK-AYLADVTYVTNSELGFDYLRDNMAISPDQLVL 197 (997)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHTT-TCCEEECCTTCCHHHH--HH-HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCS
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCCCHHHH--HH-HcCCCEEEECchhhhhHHHHHhhhcchhhccc
Confidence 58999999999999999999999988 8999999999874332 22 24799999999999 89888721 3567
Q ss_pred C---CceEEEechhhHhhc
Q 029993 75 R---NLVILVLDEADRLLD 90 (184)
Q Consensus 75 ~---~l~~lVvDEaD~l~~ 90 (184)
+ ++.++|+||+|.|+.
T Consensus 198 r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 198 RHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp CSSSSSCEEEETTHHHHTT
T ss_pred ccCCCcceEEEechHHHHH
Confidence 8 999999999999873
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.29 E-value=6.9e-12 Score=105.80 Aligned_cols=94 Identities=20% Similarity=0.171 Sum_probs=74.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCce-EEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVK-SMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVI 79 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~ 79 (184)
.+||++||++|+.|+.+.+.++ +++ +..+.|+.. ..++|+||||+.+...+... .+++.+
T Consensus 135 ~~Lvl~P~~~L~~Q~~~~~~~~-----~~~~v~~~~g~~~----------~~~~Ivv~T~~~l~~~~~~~----~~~~~l 195 (472)
T 2fwr_A 135 PTLIVVPTLALAEQWKERLGIF-----GEEYVGEFSGRIK----------ELKPLTVSTYDSAYVNAEKL----GNRFML 195 (472)
T ss_dssp CEEEEESSHHHHHHHHHHGGGG-----CGGGEEEBSSSCB----------CCCSEEEEEHHHHHHTHHHH----TTTCSE
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCcceEEECCCcC----------CcCCEEEEEcHHHHHHHHHh----cCCCCE
Confidence 4799999999999999988884 567 777777664 35799999999998766531 245889
Q ss_pred EEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 80 lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
+|+||||.+.+.+|.. +++.+ +..+++++|||+.
T Consensus 196 iIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lSATp~ 229 (472)
T 2fwr_A 196 LIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLTATFE 229 (472)
T ss_dssp EEEETGGGTTSTTTHH----HHHTC-CCSEEEEEESCCC
T ss_pred EEEECCcCCCChHHHH----HHHhc-CCCeEEEEecCcc
Confidence 9999999998877764 45555 4588999999997
No 63
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.24 E-value=9.5e-12 Score=104.96 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=79.6
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||||||.|+++.+.. ..+..-.+.... . ...+..|.++||+.+...+.. ...+++++++
T Consensus 50 ~~lvl~Ptr~La~Q~~~~l~g-------~~v~~~~~~~~~-----~-~~~~~~i~~~t~~~l~~~l~~--~~~l~~~~~i 114 (451)
T 2jlq_A 50 RTLILAPTRVVAAEMEEALRG-------LPIRYQTPAVKS-----D-HTGREIVDLMCHATFTTRLLS--STRVPNYNLI 114 (451)
T ss_dssp CEEEEESSHHHHHHHHHHTTT-------SCEEECCTTCSC-----C-CCSSCCEEEEEHHHHHHHHHH--CSCCCCCSEE
T ss_pred cEEEECCCHHHHHHHHHHhcC-------ceeeeeeccccc-----c-CCCCceEEEEChHHHHHHhhC--cccccCCCEE
Confidence 489999999999999987742 222221111110 0 124567999999999888876 3568899999
Q ss_pred EechhhHhhccchHHHHHHHHH-hCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEc
Q 029993 81 VLDEADRLLDMGFQKQISYIIS-RLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~-~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (184)
|+||||.+ +..+...+..+.. ..++++|++++|||++.++.. .+..++..+.+.
T Consensus 115 ViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~ 169 (451)
T 2jlq_A 115 VMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDP---FPQSNSPIEDIE 169 (451)
T ss_dssp EEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS---SCCCSSCEEEEE
T ss_pred EEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccchh---hhcCCCceEecC
Confidence 99999976 4433333333332 235679999999999886543 344566666554
No 64
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.23 E-value=6.8e-13 Score=111.72 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=67.9
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcE-eeechHHHHHHHHh-------cCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANL-LIGTPGRLYDIMER-------MDVL 72 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I-lV~TP~~l~~~~~~-------~~~~ 72 (184)
+++|++||++||.|+++.+..+ ++. . .+ ..+ .|+||+++.+++.. ....
T Consensus 39 ~~lil~Ptr~La~Q~~~~l~~~-----~v~--~-~~---------------~~~~~v~Tp~~l~~~l~~~~l~~~~~~~~ 95 (440)
T 1yks_A 39 RTLVLAPTRVVLSEMKEAFHGL-----DVK--F-HT---------------QAFSAHGSGREVIDAMCHATLTYRMLEPT 95 (440)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS-----CEE--E-ES---------------SCCCCCCCSSCCEEEEEHHHHHHHHTSSS
T ss_pred eEEEEcchHHHHHHHHHHHhcC-----CeE--E-ec---------------ccceeccCCccceeeecccchhHhhhCcc
Confidence 5899999999999999887643 222 1 11 111 47888776544433 0223
Q ss_pred cCCCceEEEechhhHhhccchHHHHHHHHHhC-CCCceEEEEeeeCchHHHHHHH
Q 029993 73 DFRNLVILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELSK 126 (184)
Q Consensus 73 ~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l-~~~~q~i~~SAT~~~~v~~~~~ 126 (184)
.+++++++|+||||.+ +.++...+..+.+.+ ++++|++++|||+++++..+..
T Consensus 96 ~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~ 149 (440)
T 1yks_A 96 RVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFPH 149 (440)
T ss_dssp CCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC
T ss_pred cccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh
Confidence 4899999999999998 444443333333333 3679999999999988654443
No 65
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.22 E-value=1e-11 Score=108.60 Aligned_cols=120 Identities=16% Similarity=0.140 Sum_probs=84.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||||||.|+++.+.. ..+. ..++. .. .....+-.+-+.|.+.+...+.. ...+++++++
T Consensus 217 ~vLvl~PtreLa~Qi~~~l~~-------~~v~-~~~~~-l~----~~~tp~~~i~~~t~~~l~~~l~~--~~~l~~~~~i 281 (618)
T 2whx_A 217 RTLILAPTRVVAAEMEEALRG-------LPIR-YQTPA-VK----SDHTGREIVDLMCHATFTTRLLS--STRVPNYNLI 281 (618)
T ss_dssp CEEEEESSHHHHHHHHHHTTT-------SCEE-ECCTT-SS----CCCCSSSCEEEEEHHHHHHHHHH--CSSCCCCSEE
T ss_pred eEEEEcChHHHHHHHHHHhcC-------Ccee-Eeccc-ce----eccCCCceEEEEChHHHHHHHhc--cccccCCeEE
Confidence 489999999999999987752 2222 11111 00 00122345667788877776655 2568999999
Q ss_pred EechhhHhhccchHHHHHHHHHhCC-CCceEEEEeeeCchHHHHHHHHhCCCCeEEEEcc
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRIEVRA 139 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~-~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~~ 139 (184)
|+||||.+ +.+|...+..+.+.++ +++|+++||||++..+..++. .++..+.+..
T Consensus 282 ViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~ 337 (618)
T 2whx_A 282 VMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIER 337 (618)
T ss_dssp EEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEEC
T ss_pred EEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecc
Confidence 99999998 7778888888888875 679999999999988654433 3666666554
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.21 E-value=5.9e-12 Score=109.22 Aligned_cols=104 Identities=12% Similarity=0.049 Sum_probs=56.7
Q ss_pred CEEEEeccHHHHHHHH-HHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhc---CCccCCC
Q 029993 1 MGMIISPTRELSAQIY-HVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM---DVLDFRN 76 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~---~~~~~~~ 76 (184)
.+|||+||++|+.|++ +.+..++ ..+..+.++. ...+.+|+|+||++|....... +.+...+
T Consensus 237 ~vlil~P~~~L~~Q~~~~~~~~~~-----~~~~~~~~~~---------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~ 302 (590)
T 3h1t_A 237 RILFLADRNVLVDDPKDKTFTPFG-----DARHKIEGGK---------VVKSREIYFAIYQSIASDERRPGLYKEFPQDF 302 (590)
T ss_dssp CEEEEEC-----------CCTTTC-----SSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTS
T ss_pred eEEEEeCCHHHHHHHHHHHHHhcc-----hhhhhhhccC---------CCCCCcEEEEEhhhhccccccccccccCCCCc
Confidence 3799999999999998 7766553 2333333322 1357899999999998876521 3355678
Q ss_pred ceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchH
Q 029993 77 LVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (184)
Q Consensus 77 l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~ 120 (184)
+.++|+||||++...+ ...+..+++.++. .+++++|||....
T Consensus 303 ~~lvIiDEaH~~~~~~-~~~~~~il~~~~~-~~~l~lTATP~~~ 344 (590)
T 3h1t_A 303 FDLIIIDECHRGSARD-NSNWREILEYFEP-AFQIGMTATPLRE 344 (590)
T ss_dssp CSEEEESCCC----------CHHHHHHSTT-SEEEEEESSCSCT
T ss_pred cCEEEEECCccccccc-hHHHHHHHHhCCc-ceEEEeccccccc
Confidence 9999999999986542 3556777888864 7899999997743
No 67
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.21 E-value=6.4e-11 Score=91.82 Aligned_cols=96 Identities=20% Similarity=0.132 Sum_probs=72.6
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCce-EEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVK-SMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVI 79 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~ 79 (184)
.++|++|+++|+.|+.+.+.++ +++ +..+.|+.. ...+|+|+||+.+...... ..+++.+
T Consensus 135 ~~liv~P~~~L~~q~~~~~~~~-----~~~~v~~~~g~~~----------~~~~i~v~T~~~l~~~~~~----~~~~~~l 195 (237)
T 2fz4_A 135 PTLIVVPTLALAEQWKERLGIF-----GEEYVGEFSGRIK----------ELKPLTVSTYDSAYVNAEK----LGNRFML 195 (237)
T ss_dssp CEEEEESSHHHHHHHHHHHGGG-----CGGGEEEESSSCB----------CCCSEEEEEHHHHHHTHHH----HTTTCSE
T ss_pred CEEEEeCCHHHHHHHHHHHHhC-----CCCeEEEEeCCCC----------CcCCEEEEeHHHHHhhHHH----hcccCCE
Confidence 3799999999999999888874 466 666666654 3679999999998776553 1245889
Q ss_pred EEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCchH
Q 029993 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTEA 120 (184)
Q Consensus 80 lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~ 120 (184)
+|+||||.+.+..+. .+++.++ ..+++++|||++..
T Consensus 196 lIiDEaH~l~~~~~~----~i~~~~~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 196 LIFDEVHHLPAESYV----QIAQMSI-APFRLGLTATFERE 231 (237)
T ss_dssp EEEECSSCCCTTTHH----HHHHTCC-CSEEEEEEESCC--
T ss_pred EEEECCccCCChHHH----HHHHhcc-CCEEEEEecCCCCC
Confidence 999999999776554 3455554 57899999998753
No 68
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.21 E-value=2.5e-11 Score=111.41 Aligned_cols=107 Identities=13% Similarity=0.187 Sum_probs=80.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCC-ccCCCceEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDV-LDFRNLVIL 80 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~-~~~~~l~~l 80 (184)
+|||||+++|+.|+.+.+..++... +.++.+.......+...+++|+|+||+++..++..... ..++...++
T Consensus 333 vLvlvpr~eL~~Q~~~~f~~f~~~~-------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lv 405 (1038)
T 2w00_A 333 VFFVVDRKDLDYQTMKEYQRFSPDS-------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVF 405 (1038)
T ss_dssp EEEEECGGGCCHHHHHHHHTTSTTC-------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHhcccc-------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEE
Confidence 7999999999999999998875421 23444444555555446799999999999998876222 246678899
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCch
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQTE 119 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~ 119 (184)
|+||||++.. ......|.+.+|+ +++++||||+..
T Consensus 406 IiDEAHrs~~---~~~~~~I~~~~p~-a~~lgfTATP~~ 440 (1038)
T 2w00_A 406 IFDECHRSQF---GEAQKNLKKKFKR-YYQFGFTGTPIF 440 (1038)
T ss_dssp EEESCCTTHH---HHHHHHHHHHCSS-EEEEEEESSCCC
T ss_pred EEEccchhcc---hHHHHHHHHhCCc-ccEEEEeCCccc
Confidence 9999999764 3445667777764 899999999864
No 69
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.17 E-value=9.2e-11 Score=98.41 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=71.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+++|++||++||.|+++.+. ++.+....|+... ....+.-+.+.|.+.+...+.. ...++++.++
T Consensus 33 ~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~v 97 (431)
T 2v6i_A 33 RTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS------ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLY 97 (431)
T ss_dssp CEEEEESSHHHHHHHHHHTT-------TSCEEEC---------------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEE
T ss_pred CEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc------cCCCCceEEEEchHHHHHHHhc--CccccCCCEE
Confidence 58999999999999987664 3445444443221 1123456677899988776665 4568999999
Q ss_pred EechhhHhhccchHHHHHHHHHhC-CCCceEEEEeeeCchHHHH
Q 029993 81 VLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEE 123 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l-~~~~q~i~~SAT~~~~v~~ 123 (184)
|+||||.+ +.++......+.... +..+|++++|||+++.+..
T Consensus 98 ViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 98 IMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp EEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred EEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 99999997 544444444443332 5679999999999986543
No 70
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.15 E-value=2.6e-10 Score=102.11 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=81.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+++++|+|+||.|+.+.+........+..+..-...... ...+.+|+++|||++.+.+.. ...+.+++++|
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~-------~~~~~~I~v~T~G~l~r~l~~--~~~l~~~~~lI 213 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK-------TSNKTILKYMTDGMLLREAME--DHDLSRYSCII 213 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE-------CCTTCSEEEEEHHHHHHHHHH--STTCTTEEEEE
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceeccccc-------cCCCCCEEEECHHHHHHHHhh--CccccCCCEEE
Confidence 688999999999998766554321112222211111111 124689999999999988776 35689999999
Q ss_pred echhhH-hhccc-hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHHhCCCCeEEEEc
Q 029993 82 LDEADR-LLDMG-FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRIEVR 138 (184)
Q Consensus 82 vDEaD~-l~~~~-~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i~~~ 138 (184)
+||+|. +++.+ ....+..+.... ++.|++++|||++. ..+.+ ++.++..+.+.
T Consensus 214 lDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~ 268 (773)
T 2xau_A 214 LDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQR-YFNDAPLLAVP 268 (773)
T ss_dssp ECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHHH-HTTSCCEEECC
T ss_pred ecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHHH-HhcCCCccccc
Confidence 999996 66543 234455555444 57899999999975 34444 55555555543
No 71
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.11 E-value=4.7e-11 Score=105.35 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=83.6
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
++|++|||+||.|+++.+.++ ++++..++|+...-.. --....+++++|++.+ ...+.+.++|
T Consensus 182 gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~~~iv~---TpGr~~~il~~T~e~~---------~l~~~v~lvV 244 (677)
T 3rc3_A 182 GVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEERVTVQ---PNGKQASHVSCTVEMC---------SVTTPYEVAV 244 (677)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TCCEEEECSSCEECCS---TTCCCCSEEEEEGGGC---------CSSSCEEEEE
T ss_pred eEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCeeEEec---CCCcccceeEecHhHh---------hhcccCCEEE
Confidence 589999999999999998875 5678888887653000 0001256777777322 1246779999
Q ss_pred echhhHhhccchHHHHHHHHHhCC-CCceEEEEeeeCchHHHHHHHHhCCCCeEE
Q 029993 82 LDEADRLLDMGFQKQISYIISRLP-KLRRTGLFSATQTEAVEELSKAGLRNPVRI 135 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~-~~~q~i~~SAT~~~~v~~~~~~~~~~~~~i 135 (184)
+||||.+.+.+++..+..++..++ +..|++++|||. +.+..+.... .++..+
T Consensus 245 IDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v 297 (677)
T 3rc3_A 245 IDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEV 297 (677)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEE
T ss_pred EecceecCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEE
Confidence 999999999999999999999998 678999999995 3455555554 344444
No 72
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.08 E-value=8.8e-11 Score=99.28 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=68.6
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||||||.|+++.+.. ..+....+..... ...+--+.+.|.+.+...+.. ...+++++++
T Consensus 52 ~~lvl~Ptr~La~Q~~~~l~g-------~~v~~~~~~~~~~------~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~i 116 (459)
T 2z83_A 52 RTAVLAPTRVVAAEMAEALRG-------LPVRYQTSAVQRE------HQGNEIVDVMCHATLTHRLMS--PNRVPNYNLF 116 (459)
T ss_dssp CEEEEECSHHHHHHHHHHTTT-------SCEEECC--------------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEE
T ss_pred cEEEECchHHHHHHHHHHhcC-------ceEeEEecccccC------CCCCcEEEEEchHHHHHHhhc--cccccCCcEE
Confidence 489999999999999888762 2222111111100 123445678898888776654 3678999999
Q ss_pred EechhhH-----hhccchHHHHHHHHHhCCCCceEEEEeeeCchHHHHHH
Q 029993 81 VLDEADR-----LLDMGFQKQISYIISRLPKLRRTGLFSATQTEAVEELS 125 (184)
Q Consensus 81 VvDEaD~-----l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~ 125 (184)
|+||||. ++..++...+. .++..|++++|||++.++..+.
T Consensus 117 ViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SAT~~~~~~~~~ 161 (459)
T 2z83_A 117 VMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTATPPGTTDPFP 161 (459)
T ss_dssp EESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECSSCTTCCCSSC
T ss_pred EEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEcCCCcchhhhc
Confidence 9999998 44444433322 1367999999999998755443
No 73
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.07 E-value=4.7e-12 Score=111.70 Aligned_cols=100 Identities=17% Similarity=0.205 Sum_probs=63.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHH---------HHHHHhcCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRL---------YDIMERMDV 71 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l---------~~~~~~~~~ 71 (184)
++||++|||+||.|+++.+..+ ++. . .... + . .++||+++ ...+.. .
T Consensus 272 ~~lilaPTr~La~Q~~~~l~~~-----~i~--~--~~~~-------l-~-----~v~tp~~ll~~l~~~~l~~~l~~--~ 327 (673)
T 2wv9_A 272 RTAVLAPTRVVAAEMAEALRGL-----PVR--Y--LTPA-------V-Q-----REHSGNEIVDVMCHATLTHRLMS--P 327 (673)
T ss_dssp CEEEEESSHHHHHHHHHHTTTS-----CCE--E--CCC----------------CCCCSCCCEEEEEHHHHHHHHHS--S
T ss_pred cEEEEccHHHHHHHHHHHHhcC-----Cee--e--eccc-------c-c-----ccCCHHHHHHHHHhhhhHHHHhc--c
Confidence 5899999999999999887754 222 1 0000 0 0 14555444 333322 2
Q ss_pred ccCCCceEEEechhhHhhccchHHHHHHHHHhC-CCCceEEEEeeeCchHHHHHH
Q 029993 72 LDFRNLVILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQTEAVEELS 125 (184)
Q Consensus 72 ~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l-~~~~q~i~~SAT~~~~v~~~~ 125 (184)
..+++++++|+||||.+ +..+...+..+...+ ++.+|++++|||+++++..+.
T Consensus 328 ~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~ 381 (673)
T 2wv9_A 328 LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFP 381 (673)
T ss_dssp SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSC
T ss_pred cccccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhc
Confidence 46899999999999998 332333333333333 267999999999998755443
No 74
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.70 E-value=2e-08 Score=86.60 Aligned_cols=87 Identities=20% Similarity=0.135 Sum_probs=64.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcch---------------------------------HHHHH---
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV---------------------------------KADVK--- 45 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~---------------------------------~~~~~--- 45 (184)
++|++||++|+.|+.+.+..+.+.. ++++..+.|+.+. .....
T Consensus 50 v~i~~pt~~l~~q~~~~~~~l~~~~-~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~ 128 (551)
T 3crv_A 50 VLFVVRTHNEFYPIYRDLTKIREKR-NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLK 128 (551)
T ss_dssp EEEEESSGGGHHHHHHHHTTCCCSS-CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHHhhhc-CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHH
Confidence 7999999999999999999987765 7888877764321 11111
Q ss_pred --------------HHHHcCCcEeeechHHHHHHHHhcCCccC-CCceEEEechhhHhhc
Q 029993 46 --------------KIEEEGANLLIGTPGRLYDIMERMDVLDF-RNLVILVLDEADRLLD 90 (184)
Q Consensus 46 --------------~l~~~~~~IlV~TP~~l~~~~~~~~~~~~-~~l~~lVvDEaD~l~~ 90 (184)
.....++||||+|++.|.+.... ..+.+ .....+|+||||.|.+
T Consensus 129 ~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~-~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 129 KDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYR-EFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHH-TTSCCCSTTEEEEETTGGGGGG
T ss_pred HcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHH-HhcCCCcCCeEEEEecccchHH
Confidence 11135789999999999987655 33433 4677999999999987
No 75
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.60 E-value=2.9e-08 Score=84.15 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=71.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+|||||+ .|+.|..+.+++++ |+.++..+.|+... .....++|+|+||+++..... +......++|
T Consensus 89 ~LIv~P~-~l~~qw~~e~~~~~---~~~~v~~~~g~~~~------~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vI 154 (500)
T 1z63_A 89 SLVICPL-SVLKNWEEELSKFA---PHLRFAVFHEDRSK------IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIV 154 (500)
T ss_dssp EEEEECS-TTHHHHHHHHHHHC---TTSCEEECSSSTTS------CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEE
T ss_pred EEEEccH-HHHHHHHHHHHHHC---CCceEEEEecCchh------ccccCCcEEEeeHHHHhccch----hcCCCcCEEE
Confidence 7999995 58899999988875 46677766665532 112468999999999875432 2334678999
Q ss_pred echhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 82 LDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 82 vDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
+||||.+-+.+ ......+..++ ..+.+++|||..
T Consensus 155 vDEaH~~kn~~--~~~~~~l~~l~-~~~~l~LTaTP~ 188 (500)
T 1z63_A 155 IDEAQNIKNPQ--TKIFKAVKELK-SKYRIALTGTPI 188 (500)
T ss_dssp EETGGGGSCTT--SHHHHHHHTSC-EEEEEEECSSCS
T ss_pred EeCccccCCHh--HHHHHHHHhhc-cCcEEEEecCCC
Confidence 99999986543 23445556664 467899999973
No 76
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.36 E-value=3.6e-06 Score=73.85 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=72.1
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHH--HHHHHHHc-----CCcEeeechHHHHHHHHhcCCccC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKA--DVKKIEEE-----GANLLIGTPGRLYDIMERMDVLDF 74 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~~-----~~~IlV~TP~~l~~~~~~~~~~~~ 74 (184)
+||++|+ .|..|..+.+.++.+. .+.+..+.||..... ........ ..+|+|+|++.+.... ..+.-
T Consensus 117 ~LiV~P~-sll~qW~~E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~---~~l~~ 190 (644)
T 1z3i_X 117 VIVVSPS-SLVRNWYNEVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA---EVLHK 190 (644)
T ss_dssp EEEEECH-HHHHHHHHHHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT---TTTTT
T ss_pred EEEEecH-HHHHHHHHHHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH---HHhhc
Confidence 6899997 7889999999998754 366677777654322 12222111 4789999999887643 33444
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
....++|+||||++-+.. ......+..++ ....+++|||.-
T Consensus 191 ~~~~~vI~DEaH~ikn~~--~~~~~al~~l~-~~~rl~LTgTPi 231 (644)
T 1z3i_X 191 GKVGLVICDEGHRLKNSD--NQTYLALNSMN-AQRRVLISGTPI 231 (644)
T ss_dssp SCCCEEEETTGGGCCTTC--HHHHHHHHHHC-CSEEEEECSSCS
T ss_pred CCccEEEEECceecCChh--hHHHHHHHhcc-cCcEEEEecCcc
Confidence 567899999999985432 22333344453 457789999973
No 77
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.1e-06 Score=78.90 Aligned_cols=120 Identities=14% Similarity=0.221 Sum_probs=79.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHH-----------HHcCCcEeeechHHHHHHHHhcC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI-----------EEEGANLLIGTPGRLYDIMERMD 70 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~IlV~TP~~l~~~~~~~~ 70 (184)
+||||| ..|..|..+.+.+++ |++++....|+.......... ....++|+|+|++.+......
T Consensus 289 ~LIV~P-~sll~qW~~E~~~~~---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-- 362 (800)
T 3mwy_W 289 HIIVVP-LSTMPAWLDTFEKWA---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-- 362 (800)
T ss_dssp EEEECC-TTTHHHHHHHHHHHS---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--
T ss_pred EEEEEC-chHHHHHHHHHHHHC---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--
Confidence 699999 677888888888764 577888777776544433321 123678999999999765433
Q ss_pred CccCCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC----chHHHHHHHHhCCC
Q 029993 71 VLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ----TEAVEELSKAGLRN 131 (184)
Q Consensus 71 ~~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~----~~~v~~~~~~~~~~ 131 (184)
+.-....++|+||||++-+. .......+..++ ....+++|||. ..++..+.....+.
T Consensus 363 -l~~~~w~~vIvDEaH~lkn~--~s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~ 423 (800)
T 3mwy_W 363 -LGSIKWQFMAVDEAHRLKNA--ESSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPG 423 (800)
T ss_dssp -HHTSEEEEEEETTGGGGCCS--SSHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSC
T ss_pred -HhcCCcceeehhhhhhhcCc--hhHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCcc
Confidence 22235789999999998432 234445556663 45678899997 34455555555444
No 78
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.19 E-value=2.3e-07 Score=84.95 Aligned_cols=112 Identities=19% Similarity=0.104 Sum_probs=66.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHH--HHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI--EEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
.+|||||+ .|+.|....+.+.. ++++..+.|+.. ....... .....+|+|+|++.+.........+...++.
T Consensus 202 rvLIVvP~-sLl~Qw~~E~~~~f----~l~v~v~~~~~~-~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~d 275 (968)
T 3dmq_A 202 RVLIIVPE-TLQHQWLVEMLRRF----NLRFALFDDERY-AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWD 275 (968)
T ss_dssp CEEEECCT-TTHHHHHHHHHHHS----CCCCEECCHHHH-HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCC
T ss_pred eEEEEeCH-HHHHHHHHHHHHHh----CCCEEEEccchh-hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCC
Confidence 37999999 99999998886653 455554443322 2111110 0125699999998875421110123456788
Q ss_pred EEEechhhHhhccchH-HHHHHHHHhC-CCCceEEEEeeeCc
Q 029993 79 ILVLDEADRLLDMGFQ-KQISYIISRL-PKLRRTGLFSATQT 118 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~-~~l~~i~~~l-~~~~q~i~~SAT~~ 118 (184)
++|+||||++-..+.. ......+..+ .+..+++++|||..
T Consensus 276 lVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi 317 (968)
T 3dmq_A 276 LLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPE 317 (968)
T ss_dssp EEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCS
T ss_pred EEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCc
Confidence 9999999998643211 1111222222 24567999999974
No 79
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.09 E-value=1.9e-06 Score=74.12 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=29.1
Q ss_pred cCCcEeeechHHHHHHHHhcCCc-------cCCCceEEEechhhHhh
Q 029993 50 EGANLLIGTPGRLYDIMERMDVL-------DFRNLVILVLDEADRLL 89 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~~~~~-------~~~~l~~lVvDEaD~l~ 89 (184)
..+||+|+|++.|.+.... +.+ .+.+...+|+||||.|.
T Consensus 143 ~~adiVV~n~~~l~~~~~~-~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 143 KDKDVIAMTYPYLFQKPIR-NSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp GGCSEEEEETHHHHSHHHH-HHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hcCCEEEEChHHhcCHHHH-HhhCcccccccCcCCCEEEEEccccHH
Confidence 4579999999999875443 221 13567899999999994
No 80
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=97.75 E-value=0.00011 Score=65.10 Aligned_cols=86 Identities=15% Similarity=0.069 Sum_probs=64.5
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCc------------------------------------------
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGV------------------------------------------ 38 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~------------------------------------------ 38 (184)
++.|++||++||.|-.+++..+..++ ++++.++++..
T Consensus 118 ~vhVvT~ndyLA~rdae~m~~l~~~L-glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 196 (822)
T 3jux_A 118 GVHLVTVNDYLARRDALWMGPVYLFL-GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEA 196 (822)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHH
T ss_pred ceEEEeccHHHHHhHHHHHHHHHHHh-CCEEEEEcCCCcccccccccchhhhhhhccccccccccccccccccccccccc
Confidence 47899999999999999999999999 99999988721
Q ss_pred -------chHHHHHHHHHcCCcEeeechHHH-HHHHHhcC-----CccCCCceEEEechhhHhh
Q 029993 39 -------EVKADVKKIEEEGANLLIGTPGRL-YDIMERMD-----VLDFRNLVILVLDEADRLL 89 (184)
Q Consensus 39 -------~~~~~~~~l~~~~~~IlV~TP~~l-~~~~~~~~-----~~~~~~l~~lVvDEaD~l~ 89 (184)
....+.+.. -.|||.-||...+ .++++.+= ..-.+.+.+.|+||+|.++
T Consensus 197 ~~~~~~~~~~~err~a--Y~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 197 VEAFQVELKEITRKEA--YLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HTTTCEECCBCCHHHH--HHSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred chhccccCCHHHHHHH--hcCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 111222232 4589999999987 45555411 1124678899999999986
No 81
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.28 E-value=0.0005 Score=59.93 Aligned_cols=99 Identities=21% Similarity=0.300 Sum_probs=58.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeee-chHHHHHHHHhcCCccCCCceEE
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIG-TPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~-TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+++++||+++|.++.+.+...+... +++.... .+.. .+ ....|-+++ +|+.. . +.. ...+.-.++++
T Consensus 199 vll~APTg~AA~~L~e~~~~~~~~l-~l~~~~~-~~~~--~~-----~~Tih~ll~~~~~~~-~-~~~-~~~~~l~~d~l 266 (608)
T 1w36_D 199 IRLAAPTGKAAARLTESLGKALRQL-PLTDEQK-KRIP--ED-----ASTLHRLLGAQPGSQ-R-LRH-HAGNPLHLDVL 266 (608)
T ss_dssp EEEEBSSHHHHHHHHHHHTHHHHHS-SCCSCCC-CSCS--CC-----CBTTTSCC--------------CTTSCCSCSEE
T ss_pred EEEEeCChhHHHHHHHHHHHHHhcC-CCCHHHH-hccc--hh-----hhhhHhhhccCCCch-H-HHh-ccCCCCCCCEE
Confidence 6789999999999999888776655 3321110 0000 00 012233333 33321 1 112 22233378899
Q ss_pred EechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 81 VLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
|+|||+ |++ ...+..+++.++..+|+++++-.
T Consensus 267 IIDEAs-ml~---~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 267 VVDEAS-MID---LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp EECSGG-GCB---HHHHHHHHHTCCTTCEEEEEECT
T ss_pred EEechh-hCC---HHHHHHHHHhCCCCCEEEEEcch
Confidence 999999 665 56778889999999999998755
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.28 E-value=0.0011 Score=58.39 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=37.8
Q ss_pred echHHHHHHHHhcCCccCCCceEEEechhhHhhcc--chHHHHH----HHHH------------------hCCCCceEEE
Q 029993 57 GTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDM--GFQKQIS----YIIS------------------RLPKLRRTGL 112 (184)
Q Consensus 57 ~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~--~~~~~l~----~i~~------------------~l~~~~q~i~ 112 (184)
+||++|++++.. + .++|+||+|.|++. ++...+. .... ..+..+|+++
T Consensus 320 ~tpg~LlDyl~~-~-------~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~ 391 (661)
T 2d7d_A 320 STPYTLLDYFPD-D-------FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVY 391 (661)
T ss_dssp CCCBCGGGGSCS-S-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEE
T ss_pred CCccHHHHHccc-C-------cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEE
Confidence 999999998754 2 28999999998743 1111111 1111 0124689999
Q ss_pred EeeeCchHHH
Q 029993 113 FSATQTEAVE 122 (184)
Q Consensus 113 ~SAT~~~~v~ 122 (184)
||||+++...
T Consensus 392 ~SAT~~~~~~ 401 (661)
T 2d7d_A 392 VSATPGPYEI 401 (661)
T ss_dssp ECSSCCHHHH
T ss_pred EecCCChhHH
Confidence 9999987643
No 83
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.75 E-value=0.0029 Score=55.64 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=35.4
Q ss_pred echHHHHHHHHhcCCccCCCceEEEechhhHhhcc--c-hHHH---HHHHHH------------------hCCCCceEEE
Q 029993 57 GTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDM--G-FQKQ---ISYIIS------------------RLPKLRRTGL 112 (184)
Q Consensus 57 ~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~--~-~~~~---l~~i~~------------------~l~~~~q~i~ 112 (184)
+||++|++++.. -.++|+||+|.+++. + +... ...... ..++.+|+++
T Consensus 314 ~tp~~LlDyl~~--------~~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~ 385 (664)
T 1c4o_A 314 EPPYTLLDYFPE--------DFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVF 385 (664)
T ss_dssp SCCCCGGGGSCT--------TCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEE
T ss_pred CCchHHHHHHhh--------ccEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEE
Confidence 778888877644 238999999998753 1 1111 111111 0114689999
Q ss_pred EeeeCchHH
Q 029993 113 FSATQTEAV 121 (184)
Q Consensus 113 ~SAT~~~~v 121 (184)
||||.++..
T Consensus 386 ~SAT~~~~~ 394 (664)
T 1c4o_A 386 VSATPGPFE 394 (664)
T ss_dssp EESSCCHHH
T ss_pred EecCCCHHH
Confidence 999998754
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.68 E-value=0.12 Score=37.99 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=53.6
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+||+++|++-+..+.+.+... ++.+..++|+.+..+.. ....++..+|+|+|.. .. ..+|+.++
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~-----~~--~Gldi~~v 123 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDV-----AS--KGLDFPAI 123 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHH-----HH--TTCCCCCC
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCc-----hh--cCCCcccC
Confidence 3799999999999999888775 56788888887654433 2334567899999941 22 57899999
Q ss_pred eEEEech
Q 029993 78 VILVLDE 84 (184)
Q Consensus 78 ~~lVvDE 84 (184)
.++|.-+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 9887633
No 85
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.63 E-value=0.067 Score=38.01 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=53.6
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+||+++|++-+..+.+.+... ++.+..++|+.+..+... ...++..+|+|+|.. -. ..+|+.++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~-~Gld~~~~ 104 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV------AA-RGIDIENI 104 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG------GT-TTCCCSCC
T ss_pred cEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh------hh-cCCchhcC
Confidence 3799999999999999888775 577888888876544332 333467899999952 12 67899899
Q ss_pred eEEEech
Q 029993 78 VILVLDE 84 (184)
Q Consensus 78 ~~lVvDE 84 (184)
.++|.-+
T Consensus 105 ~~Vi~~~ 111 (163)
T 2hjv_A 105 SLVINYD 111 (163)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 9888644
No 86
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=95.32 E-value=0.15 Score=36.17 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=53.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+||+++|++-+..+...+... ++.+..++|+.+..+.. ....++..+|+|+|.. -. ..+|+.++
T Consensus 32 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~-~G~d~~~~ 99 (165)
T 1fuk_A 32 QAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL------LA-RGIDVQQV 99 (165)
T ss_dssp CEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG------GT-TTCCCCSC
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh------hh-cCCCcccC
Confidence 4799999999999998888774 56788888887654433 2333467899999952 12 57888889
Q ss_pred eEEEech
Q 029993 78 VILVLDE 84 (184)
Q Consensus 78 ~~lVvDE 84 (184)
.++|.-+
T Consensus 100 ~~Vi~~~ 106 (165)
T 1fuk_A 100 SLVINYD 106 (165)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 9887644
No 87
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=95.03 E-value=0.14 Score=38.03 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=53.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+||+++|++-+..+.+.+.+. ++.+..++|+.+..++.. ...++..+|+|+|.- -. ..+|+.++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~------~~-~Gidi~~v 100 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV------AA-RGLDIPQV 100 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT------TT-CSSSCCCB
T ss_pred eEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh------hh-cCCCCccC
Confidence 3799999999999998888775 577888999876554433 333467899999952 22 67899999
Q ss_pred eEEEe
Q 029993 78 VILVL 82 (184)
Q Consensus 78 ~~lVv 82 (184)
.++|.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 98874
No 88
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=94.79 E-value=0.13 Score=37.47 Aligned_cols=70 Identities=10% Similarity=0.127 Sum_probs=44.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH---HHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+||+++|++-|..+...+... ++.+..+.|+.+..+. .....++..+|+|+|. .+. ..+|+.++
T Consensus 48 k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~------~Gldi~~~ 115 (185)
T 2jgn_A 48 LTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VAA------RGLDISNV 115 (185)
T ss_dssp CEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC-------------CCCSB
T ss_pred eEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-hhh------cCCCcccC
Confidence 4799999999999998888774 5678888887654332 3334456889999995 221 46788888
Q ss_pred eEEEe
Q 029993 78 VILVL 82 (184)
Q Consensus 78 ~~lVv 82 (184)
.++|.
T Consensus 116 ~~VI~ 120 (185)
T 2jgn_A 116 KHVIN 120 (185)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88875
No 89
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=94.55 E-value=0.13 Score=36.90 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=52.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||+++|++.|..+...+... ++.+..++|+.+..+... ...++..+|+|+|.. -. ..+|+..+.
T Consensus 37 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~------~~-~Gid~~~~~ 104 (175)
T 2rb4_A 37 AIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV------CA-RGIDVKQVT 104 (175)
T ss_dssp EEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS------CC-TTTCCTTEE
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc------hh-cCCCcccCC
Confidence 799999999999998887764 567888888876544432 333467899999952 12 578999999
Q ss_pred EEEe
Q 029993 79 ILVL 82 (184)
Q Consensus 79 ~lVv 82 (184)
++|.
T Consensus 105 ~Vi~ 108 (175)
T 2rb4_A 105 IVVN 108 (175)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9884
No 90
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=94.31 E-value=0.17 Score=36.23 Aligned_cols=72 Identities=8% Similarity=0.087 Sum_probs=53.6
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+||+++|++-+..+.+.+... ++.+..++|+.+..+... ...++..+|+|+|.. -. ..+|+.++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~-~Gldi~~~ 100 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FG-RGMDIERV 100 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CS-TTCCGGGC
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hh-cCcchhhC
Confidence 4799999999999998888775 567888888876544332 333467899999962 12 57888899
Q ss_pred eEEEech
Q 029993 78 VILVLDE 84 (184)
Q Consensus 78 ~~lVvDE 84 (184)
.++|.-+
T Consensus 101 ~~Vi~~d 107 (172)
T 1t5i_A 101 NIAFNYD 107 (172)
T ss_dssp SEEEESS
T ss_pred CEEEEEC
Confidence 9888644
No 91
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=93.67 E-value=0.47 Score=38.23 Aligned_cols=69 Identities=10% Similarity=0.135 Sum_probs=53.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||+++|++-|..+++.+.+. ++.+..++|+....+.. ....++..+|+|+|. .+. ..+|+.++.
T Consensus 279 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidip~v~ 346 (417)
T 2i4i_A 279 TLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA--RGLDISNVK 346 (417)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH--TTSCCCCEE
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh--cCCCcccCC
Confidence 799999999999998888774 56788888887654433 333456789999997 222 578999999
Q ss_pred EEEe
Q 029993 79 ILVL 82 (184)
Q Consensus 79 ~lVv 82 (184)
++|.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 92
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.14 E-value=0.45 Score=40.35 Aligned_cols=74 Identities=15% Similarity=0.270 Sum_probs=56.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||+++|+.-|..+++.+.+.... ++.+..++|+....+.. ....++..+|||||.. -. ..+|+.++.
T Consensus 342 ~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~------~~-~GiDip~v~ 412 (563)
T 3i5x_A 342 AIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------GA-RGMDFPNVH 412 (563)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------GT-SSCCCTTCC
T ss_pred EEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch------hh-cCCCcccCC
Confidence 799999999999999999887542 67888888887654433 3334578999999972 22 678999999
Q ss_pred EEEech
Q 029993 79 ILVLDE 84 (184)
Q Consensus 79 ~lVvDE 84 (184)
++|.-.
T Consensus 413 ~VI~~~ 418 (563)
T 3i5x_A 413 EVLQIG 418 (563)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 888554
No 93
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=92.98 E-value=0.37 Score=38.06 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=52.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+||+++|++-+..+...+... ++.+..++|+.+..++. ....++..+|+|+|.- -. ..+|+.++
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v------a~-~Gidi~~v 97 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV------AA-RGLDIPQV 97 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST------TT-CSTTCCCC
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech------hh-cCccccce
Confidence 3799999999999888777653 57888899987654443 2334567899999952 22 67888888
Q ss_pred eEEEe
Q 029993 78 VILVL 82 (184)
Q Consensus 78 ~~lVv 82 (184)
.++|.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 88874
No 94
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.93 E-value=0.46 Score=39.12 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=53.1
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHH---HHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVK---KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||+++|++-|..+.+.+.+. ++.+..++|+....+... ...++..+|+|||.- -. ..+|+.++.
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v------~~-rGlDi~~v~ 370 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV------AS-RGLDIKNIK 370 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG------GT-SSCCCTTCC
T ss_pred EEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh------hh-CCCCcccCC
Confidence 689999999999998888774 577888888876544433 333567899999972 22 689999999
Q ss_pred EEEe
Q 029993 79 ILVL 82 (184)
Q Consensus 79 ~lVv 82 (184)
++|.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
No 95
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.88 E-value=0.5 Score=40.39 Aligned_cols=75 Identities=15% Similarity=0.267 Sum_probs=57.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||+++|++-|..+++.+.+.... ++.+..++|+....+.. ....++..+|||||.. -. ..+|+.++.
T Consensus 291 ~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~------~~-~GiDip~v~ 361 (579)
T 3sqw_A 291 AIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------GA-RGMDFPNVH 361 (579)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------GT-SSCCCTTCC
T ss_pred EEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch------hh-cCCCcccCC
Confidence 799999999999999999887542 67888888887654443 3344578999999972 22 678999999
Q ss_pred EEEechh
Q 029993 79 ILVLDEA 85 (184)
Q Consensus 79 ~lVvDEa 85 (184)
++|.-..
T Consensus 362 ~VI~~~~ 368 (579)
T 3sqw_A 362 EVLQIGV 368 (579)
T ss_dssp EEEEESC
T ss_pred EEEEcCC
Confidence 9886543
No 96
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.83 E-value=0.55 Score=41.14 Aligned_cols=76 Identities=14% Similarity=0.267 Sum_probs=58.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHH---HHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+||+++|+..|..+.+.+.+. ++++..++|+....+.... ..++..+|+|||-. + . .++++.++
T Consensus 447 ~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~-----l-~-~GlDip~v 514 (661)
T 2d7d_A 447 RVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL-----L-R-EGLDIPEV 514 (661)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC-----C-S-TTCCCTTE
T ss_pred eEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch-----h-h-CCcccCCC
Confidence 3799999999999998888775 5677778887654444333 34467899999962 1 2 68899999
Q ss_pred eEEEechhhHh
Q 029993 78 VILVLDEADRL 88 (184)
Q Consensus 78 ~~lVvDEaD~l 88 (184)
+++|+-++|..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999999864
No 97
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=92.59 E-value=0.15 Score=42.39 Aligned_cols=67 Identities=6% Similarity=0.038 Sum_probs=46.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+++|++||++-|..+++.+.+. ++++..++|+ ..........++..+|||+|.- -. ..+|+. +.++
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~v------~e-~GiDip-v~~V 244 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRK-TFEREYPTIKQKKPDFILATDI------AE-MGANLC-VERV 244 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSS-SCC--------CCCSEEEESSS------TT-CCTTCC-CSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecch-hHHHHHhhhcCCCceEEEECCh------hh-eeeccC-ceEE
Confidence 5899999999999999888775 5678888874 3333444455678999999972 22 578888 8887
Q ss_pred E
Q 029993 81 V 81 (184)
Q Consensus 81 V 81 (184)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 98
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.52 E-value=2.4 Score=33.46 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=55.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||++++++-|..+++.+.+. +..+..++|+.+..++. ....++..+|+|+|.. -. ..+|+.++.
T Consensus 246 ~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~-~Gidip~~~ 313 (395)
T 3pey_A 246 SIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV------LA-RGIDIPTVS 313 (395)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG------GS-SSCCCTTEE
T ss_pred EEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh------hh-cCCCcccCC
Confidence 689999999999999888775 56788888887654433 2333567899999972 12 688999999
Q ss_pred EEEechhhH
Q 029993 79 ILVLDEADR 87 (184)
Q Consensus 79 ~lVvDEaD~ 87 (184)
++|.-+...
T Consensus 314 ~Vi~~~~p~ 322 (395)
T 3pey_A 314 MVVNYDLPT 322 (395)
T ss_dssp EEEESSCCB
T ss_pred EEEEcCCCC
Confidence 998755543
No 99
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=92.42 E-value=0.53 Score=37.76 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=52.8
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||+++|++-|..+++.+.+. +..+..++|+....++. ....++..+|+|+|.. -. ..+|+.++.
T Consensus 269 ~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~-~Gidip~~~ 336 (412)
T 3fht_A 269 AMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV------CA-RGIDVEQVS 336 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG------GT-SSCCCTTEE
T ss_pred EEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc------cc-cCCCccCCC
Confidence 789999999999999988875 56778888887654443 2333567899999972 22 688999999
Q ss_pred EEEe
Q 029993 79 ILVL 82 (184)
Q Consensus 79 ~lVv 82 (184)
++|.
T Consensus 337 ~Vi~ 340 (412)
T 3fht_A 337 VVIN 340 (412)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9884
No 100
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=92.06 E-value=0.6 Score=36.67 Aligned_cols=71 Identities=14% Similarity=0.245 Sum_probs=52.1
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||+++|++-+..+++.+.+. +..+..++|+.+..+.. ....++..+|+|+|. . +. ..+|+.++.
T Consensus 241 ~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~----~~--~Gid~~~~~ 308 (367)
T 1hv8_A 241 GLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-V----MS--RGIDVNDLN 308 (367)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-T----HH--HHCCCSCCS
T ss_pred EEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-h----hh--cCCCcccCC
Confidence 689999999999999888875 56788888887654433 233356789999995 2 22 357888888
Q ss_pred EEEech
Q 029993 79 ILVLDE 84 (184)
Q Consensus 79 ~lVvDE 84 (184)
++|.-+
T Consensus 309 ~Vi~~~ 314 (367)
T 1hv8_A 309 CVINYH 314 (367)
T ss_dssp EEEESS
T ss_pred EEEEec
Confidence 887543
No 101
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=91.91 E-value=0.31 Score=40.28 Aligned_cols=66 Identities=15% Similarity=0.058 Sum_probs=48.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+++|++||++-|..+++.+.+. +.++..++|+ ...+......++..+|||||.- + . ..+|+. +..+
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT~v-----~-e-~GiDip-~~~V 238 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRK-TFESEYPKCKSEKWDFVITTDI-----S-E-MGANFK-ADRV 238 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTT-THHHHTTHHHHSCCSEEEECGG-----G-G-TSCCCC-CSEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCc-cHHHHHHhhcCCCCeEEEECch-----H-H-cCcccC-CcEE
Confidence 4799999999999998888775 5678888876 3334444555678999999972 2 2 567775 5544
No 102
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.54 E-value=0.75 Score=37.03 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=52.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||+++|++-+..+.+.+.+. ++.+..++|+....+.. ....++..+|+|+|.. -. ..+|+.++.
T Consensus 279 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~-~Gidi~~v~ 346 (410)
T 2j0s_A 279 AVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV------WA-RGLDVPQVS 346 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG------GS-SSCCCTTEE
T ss_pred EEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh------hh-CcCCcccCC
Confidence 789999999999998888774 56788888887654432 3334567899999972 12 678999999
Q ss_pred EEEe
Q 029993 79 ILVL 82 (184)
Q Consensus 79 ~lVv 82 (184)
++|.
T Consensus 347 ~Vi~ 350 (410)
T 2j0s_A 347 LIIN 350 (410)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
No 103
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=91.44 E-value=2.5 Score=37.03 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=57.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHH---HHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||+++|+..|..+.+.+.+. ++++..++|+....+.... ..++..+|+|||-. + . ..+++.+++
T Consensus 442 vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-l-----~-~GlDip~v~ 509 (664)
T 1c4o_A 442 TLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-L-----R-EGLDIPEVS 509 (664)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-C-----C-TTCCCTTEE
T ss_pred EEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-h-----h-cCccCCCCC
Confidence 789999999999998888775 5677778887654444333 33467899999952 1 2 688999999
Q ss_pred EEEechhhHh
Q 029993 79 ILVLDEADRL 88 (184)
Q Consensus 79 ~lVvDEaD~l 88 (184)
++|+=++|..
T Consensus 510 lVI~~d~d~~ 519 (664)
T 1c4o_A 510 LVAILDADKE 519 (664)
T ss_dssp EEEETTTTSC
T ss_pred EEEEeCCccc
Confidence 9999888764
No 104
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=91.05 E-value=0.76 Score=36.79 Aligned_cols=70 Identities=4% Similarity=0.058 Sum_probs=52.6
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||+++|++-+..+++.+.+. ++.+..++|+....++. ....++..+|+|+|.. + . ..+|+.++.
T Consensus 261 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~-~-~Gidip~~~ 328 (400)
T 1s2m_A 261 AIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL-----L-T-RGIDIQAVN 328 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC-----S-S-SSCCCTTEE
T ss_pred EEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-----c-c-cCCCccCCC
Confidence 799999999999999988876 46788888887654433 2333467899999961 1 2 578999999
Q ss_pred EEEec
Q 029993 79 ILVLD 83 (184)
Q Consensus 79 ~lVvD 83 (184)
++|.-
T Consensus 329 ~Vi~~ 333 (400)
T 1s2m_A 329 VVINF 333 (400)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88853
No 105
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=91.03 E-value=0.74 Score=39.06 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=52.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||.++|++-+..+++.+.+. ++.+..++|+.+..+.. ....++..+|+|+|.. + . ..+|+.+++
T Consensus 239 ~IVf~~sr~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a-----~-~-~GiD~p~v~ 306 (523)
T 1oyw_A 239 GIIYCNSRAKVEDTAARLQSK-----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA-----F-G-MGINKPNVR 306 (523)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT-----S-C-TTTCCTTCC
T ss_pred EEEEeCCHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-----h-h-CCCCccCcc
Confidence 799999999999999888774 56788888887654432 2334567899999972 1 2 578888898
Q ss_pred EEEec
Q 029993 79 ILVLD 83 (184)
Q Consensus 79 ~lVvD 83 (184)
++|.-
T Consensus 307 ~VI~~ 311 (523)
T 1oyw_A 307 FVVHF 311 (523)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 88753
No 106
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.01 E-value=0.82 Score=36.38 Aligned_cols=72 Identities=8% Similarity=0.121 Sum_probs=53.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||+++|++-|..+++.+.+. ++.+..++|+....+.. ....++..+|+|+|.. + . ..+|+.++.
T Consensus 253 ~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~-~-~Gidi~~~~ 320 (391)
T 1xti_A 253 VVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----F-G-RGMDIERVN 320 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC-----C-S-SCBCCTTEE
T ss_pred EEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh-----h-h-cCCCcccCC
Confidence 799999999999999888774 56788888887654433 2333467899999952 1 2 578999999
Q ss_pred EEEechh
Q 029993 79 ILVLDEA 85 (184)
Q Consensus 79 ~lVvDEa 85 (184)
++|.-+.
T Consensus 321 ~Vi~~~~ 327 (391)
T 1xti_A 321 IAFNYDM 327 (391)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 9986554
No 107
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=90.61 E-value=0.82 Score=39.50 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=52.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||.++|+.-|.++++.+... ++.+..++|+.+..+.. ....++..+|||+|.. + . ..+|+.+++
T Consensus 270 ~IVf~~sr~~~e~la~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a-----~-~-~GID~p~V~ 337 (591)
T 2v1x_A 270 GIIYCFSQKDSEQVTVSLQNL-----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA-----F-G-MGIDKPDVR 337 (591)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT-----S-C-TTCCCSCEE
T ss_pred eEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-----h-h-cCCCccccc
Confidence 689999999999999888774 57888889887655443 2333567899999962 1 2 577888888
Q ss_pred EEEe
Q 029993 79 ILVL 82 (184)
Q Consensus 79 ~lVv 82 (184)
++|.
T Consensus 338 ~VI~ 341 (591)
T 2v1x_A 338 FVIH 341 (591)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 108
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.12 E-value=0.42 Score=44.63 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=59.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
+++|++|+++-+..+++.+.+. .|+.++..++|+.+..+.. ....++..+|+|||. .+. ..+|+.++
T Consensus 814 qvlvf~~~v~~~~~l~~~L~~~---~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e--~GiDip~v 883 (1151)
T 2eyq_A 814 QVYYLYNDVENIQKAAERLAEL---VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE--TGIDIPTA 883 (1151)
T ss_dssp EEEEECCCSSCHHHHHHHHHHH---CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTG--GGSCCTTE
T ss_pred eEEEEECCHHHHHHHHHHHHHh---CCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cce--eeecccCC
Confidence 4789999999999888888775 4578899999887654432 333456899999997 222 57899999
Q ss_pred eEEEechhhH
Q 029993 78 VILVLDEADR 87 (184)
Q Consensus 78 ~~lVvDEaD~ 87 (184)
.++|+..+|.
T Consensus 884 ~~VIi~~~~~ 893 (1151)
T 2eyq_A 884 NTIIIERADH 893 (1151)
T ss_dssp EEEEETTTTS
T ss_pred cEEEEeCCCC
Confidence 9999888875
No 109
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=88.99 E-value=0.069 Score=38.23 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=49.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||+++|++-|..+.+.+... ++.+..++|+.+..+.. ....++..+|+|+|. .+. ..+|+.++.
T Consensus 33 ~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~------~Gid~~~~~ 100 (170)
T 2yjt_D 33 SIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VAA------RGIDIPDVS 100 (170)
Confidence 689999999999998888775 46677778776543332 223345688999994 221 467777787
Q ss_pred EEEech
Q 029993 79 ILVLDE 84 (184)
Q Consensus 79 ~lVvDE 84 (184)
++|.-+
T Consensus 101 ~Vi~~~ 106 (170)
T 2yjt_D 101 HVFNFD 106 (170)
Confidence 776533
No 110
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=89.16 E-value=0.64 Score=40.89 Aligned_cols=67 Identities=12% Similarity=0.080 Sum_probs=48.0
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
++||++||++-+..+++.+.+. ++++..++|+ ..........++..+|||+|-- -. ..+|+. +.++
T Consensus 412 ~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTdv------~e-~GIDip-v~~V 477 (673)
T 2wv9_A 412 KTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTDI------SE-MGANFG-ASRV 477 (673)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECGG------GG-TTCCCC-CSEE
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChH-HHHHHHHHHHCCCceEEEECch------hh-cceeeC-CcEE
Confidence 4799999999999988877764 5778888874 3333333334567899999962 22 578887 7776
Q ss_pred E
Q 029993 81 V 81 (184)
Q Consensus 81 V 81 (184)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 111
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=89.05 E-value=0.49 Score=42.28 Aligned_cols=74 Identities=14% Similarity=0.083 Sum_probs=53.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhh------cCCCceEEEEECCcchHHHHHHHH--------HcCCcEeeechHHHHHHHH
Q 029993 2 GMIISPTRELSAQIYHVAQPFIS------TLPDVKSMLLVGGVEVKADVKKIE--------EEGANLLIGTPGRLYDIME 67 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~IlV~TP~~l~~~~~ 67 (184)
+||++|+++-+..+.+.+.+... ..+++.+..++|+....++..... ++...|||||.- +.
T Consensus 306 iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i-----ae 380 (773)
T 2xau_A 306 ILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI-----AE 380 (773)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH-----HH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH-----HH
Confidence 79999999999999998886332 224788999999887665543321 235689999972 22
Q ss_pred hcCCccCCCceEEEe
Q 029993 68 RMDVLDFRNLVILVL 82 (184)
Q Consensus 68 ~~~~~~~~~l~~lVv 82 (184)
..+++.++.++|-
T Consensus 381 --~GidIp~v~~VId 393 (773)
T 2xau_A 381 --TSLTIDGIVYVVD 393 (773)
T ss_dssp --HTCCCTTEEEEEE
T ss_pred --hCcCcCCeEEEEe
Confidence 4788888987773
No 112
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.07 E-value=1.6 Score=35.33 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=51.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEEC--------CcchHHH---HHHHHHcCCcEeeechHHHHHHHHhcC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVG--------GVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMD 70 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~---~~~l~~~~~~IlV~TP~~l~~~~~~~~ 70 (184)
+||++++++-+..+.+.+... ++++..++| +.+..++ .....++.++|+|+|.. + . .
T Consensus 364 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~-~-----~-~ 431 (494)
T 1wp9_A 364 IIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSV-G-----E-E 431 (494)
T ss_dssp EEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGG-G-----G-G
T ss_pred EEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCc-c-----c-c
Confidence 799999999999999888875 567888888 4432222 33344567899999952 1 2 5
Q ss_pred CccCCCceEEEechhh
Q 029993 71 VLDFRNLVILVLDEAD 86 (184)
Q Consensus 71 ~~~~~~l~~lVvDEaD 86 (184)
++|+..+.++|.-+..
T Consensus 432 Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 432 GLDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGGSTTCCEEEESSCC
T ss_pred CCCchhCCEEEEeCCC
Confidence 7888889988865543
No 113
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=87.66 E-value=7.1 Score=32.37 Aligned_cols=75 Identities=13% Similarity=0.188 Sum_probs=50.3
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH---HHHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
.+|+..+.+-+..+.+.+.+. +.++..++|+....+. .....++..+|+|||+..+. .++|+.++.
T Consensus 350 ~~ivf~~~~~~~~l~~~L~~~-----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~------~GiDip~v~ 418 (510)
T 2oca_A 350 AFVMFKHVSHGKAIFDLIKNE-----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS------TGISVKNLH 418 (510)
T ss_dssp EEEEESSHHHHHHHHHHHHTT-----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH------HSCCCCSEE
T ss_pred eEEEEecHHHHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh------cccccccCc
Confidence 355666666666655555543 2478888887764433 22334567899999985544 367999999
Q ss_pred EEEechhhH
Q 029993 79 ILVLDEADR 87 (184)
Q Consensus 79 ~lVvDEaD~ 87 (184)
.+|+..++.
T Consensus 419 ~vi~~~~~~ 427 (510)
T 2oca_A 419 HVVLAHGVK 427 (510)
T ss_dssp EEEESSCCC
T ss_pred EEEEeCCCC
Confidence 999988873
No 114
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=87.34 E-value=0.94 Score=37.56 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=47.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++-|.++++.+.+. ++++..++|+.. ........++..+|||+|.- -. ..+|+.. .++
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~v------~~-~GiDip~-~~V 255 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTDI------SE-MGANFRA-GRV 255 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECGG------GG-SSCCCCC-SEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHH-HHHHHhhccCCceEEEECCH------HH-hCcCCCC-CEE
Confidence 4799999999999998888764 567777777554 23333334567899999972 22 6788887 666
Q ss_pred E
Q 029993 81 V 81 (184)
Q Consensus 81 V 81 (184)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 115
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=87.33 E-value=0.43 Score=41.55 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=31.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCc
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGV 38 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~ 38 (184)
++|++||++++.|+.+.+..+.... ++++..+.|+.
T Consensus 54 vli~t~T~~l~~Qi~~el~~l~~~~-~~~~~~l~gr~ 89 (620)
T 4a15_A 54 VLYLVRTNSQEEQVIKELRSLSSTM-KIRAIPMQGRV 89 (620)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHS-CCCEEECCCHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhhcc-CeEEEEEECCC
Confidence 7899999999999999999998766 78888877754
No 116
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=85.89 E-value=1.5 Score=35.46 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=49.3
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEE-EEECCcchHHHHHHHHHcCCcEeee----chHHHHHHHHhcCCccCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSM-LLVGGVEVKADVKKIEEEGANLLIG----TPGRLYDIMERMDVLDFR 75 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~IlV~----TP~~l~~~~~~~~~~~~~ 75 (184)
.+||+++|++-|..+.+.+.+. ++++. .++|+ .. + .....++..+|+|| |.- -. ..+|+.
T Consensus 254 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~h~~-~r-~-~~~f~~g~~~vLvat~s~T~~------~~-~GiDip 318 (414)
T 3oiy_A 254 GILIFAQTEEEGKELYEYLKRF-----KFNVGETWSEF-EK-N-FEDFKVGKINILIGVQAYYGK------LT-RGVDLP 318 (414)
T ss_dssp SEEEEESSHHHHHHHHHHHHHT-----TCCEEESSSCH-HH-H-HHHHHTTSCSEEEEECCTTCC------CC-CCCCCT
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCceehhhcCc-ch-H-HHHHhCCCCeEEEEecCcCch------hh-ccCccc
Confidence 4799999999999999888874 46666 44443 22 2 55555678999999 541 11 678999
Q ss_pred C-ceEEEech
Q 029993 76 N-LVILVLDE 84 (184)
Q Consensus 76 ~-l~~lVvDE 84 (184)
+ +.++|.-+
T Consensus 319 ~~v~~VI~~~ 328 (414)
T 3oiy_A 319 ERIKYVIFWG 328 (414)
T ss_dssp TTCCEEEEES
T ss_pred cccCEEEEEC
Confidence 8 89887533
No 117
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=85.70 E-value=2.4 Score=37.27 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=53.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHH---HHHHHHH--cCCcEeeechHHHHHHHHhcCCccCCC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKA---DVKKIEE--EGANLLIGTPGRLYDIMERMDVLDFRN 76 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~l~~--~~~~IlV~TP~~l~~~~~~~~~~~~~~ 76 (184)
.+|+++|++-+..+.+.+.+. +..+..++|+....+ ......+ +..+|||||-- -. ..+|+ +
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi------~e-~GlDi-~ 389 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDA------IG-MGLNL-S 389 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGG------GG-SSCCC-C
T ss_pred CEEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcH------HH-CCcCc-C
Confidence 478899999888887777763 578889999887553 3333333 55899999982 23 67899 8
Q ss_pred ceEEEechhhHh
Q 029993 77 LVILVLDEADRL 88 (184)
Q Consensus 77 l~~lVvDEaD~l 88 (184)
++++|.-...+.
T Consensus 390 v~~VI~~~~~k~ 401 (677)
T 3rc3_A 390 IRRIIFYSLIKP 401 (677)
T ss_dssp BSEEEESCSBC-
T ss_pred ccEEEECCcccc
Confidence 999998877653
No 118
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=85.26 E-value=4.5 Score=33.76 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=15.4
Q ss_pred EEEEeccHHHHHHHHHHHH
Q 029993 2 GMIISPTRELSAQIYHVAQ 20 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~ 20 (184)
.+|++||++++..+.+.+.
T Consensus 187 ~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 187 DLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp CEEEESCHHHHHHHHHHHT
T ss_pred eEEEeCCHHHHHHHHHHhh
Confidence 3789999999988877654
No 119
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=84.72 E-value=1.9 Score=37.49 Aligned_cols=66 Identities=11% Similarity=0.071 Sum_probs=48.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||+++|++-|..+++.+.+. +.++..++|+ ...+......++..+|||||.- -. ..+|+. +.++
T Consensus 357 ~~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTdv------~~-rGiDi~-v~~V 422 (618)
T 2whx_A 357 KTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTDI------SE-MGANFR-AGRV 422 (618)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTT-THHHHTTHHHHSCCSEEEECGG------GG-TTCCCC-CSEE
T ss_pred CEEEEECChhHHHHHHHHHHHc-----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECcH------HH-cCcccC-ceEE
Confidence 4799999999999999888875 4677777774 3333444555678999999982 22 577874 7765
No 120
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=82.16 E-value=3.7 Score=31.63 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=46.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||+++|++-+..+.+.+. ++..++|+....+.. ....++..+|+|+|. .+. ..+|+.++.
T Consensus 223 ~lvf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gid~~~~~ 286 (337)
T 2z0m_A 223 VIVFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS--RGLDIPLVE 286 (337)
T ss_dssp EEEECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH--TTCCCCCBS
T ss_pred EEEEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc--cCCCccCCC
Confidence 6899999998877655333 355667776544333 233346789999996 222 578999999
Q ss_pred EEEechh
Q 029993 79 ILVLDEA 85 (184)
Q Consensus 79 ~lVvDEa 85 (184)
++|.-..
T Consensus 287 ~Vi~~~~ 293 (337)
T 2z0m_A 287 KVINFDA 293 (337)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 8886443
No 121
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=81.71 E-value=17 Score=28.39 Aligned_cols=96 Identities=11% Similarity=0.162 Sum_probs=52.8
Q ss_pred HHHHHhhhcCCCceEEEEECCcchHHH--HHHHHH-------cCCcEeeechH-------HHHHHHHhcCCc-cCCCceE
Q 029993 17 HVAQPFISTLPDVKSMLLVGGVEVKAD--VKKIEE-------EGANLLIGTPG-------RLYDIMERMDVL-DFRNLVI 79 (184)
Q Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~l~~-------~~~~IlV~TP~-------~l~~~~~~~~~~-~~~~l~~ 79 (184)
+.+.+..+.- .....+++|....... ...+.+ ..++++.-.|. .+.+++...... ....-+.
T Consensus 7 ~~L~~~i~~~-~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kv 85 (305)
T 2gno_A 7 ETLKRIIEKS-EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKY 85 (305)
T ss_dssp HHHHHHHHTC-SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEE
T ss_pred HHHHHHHHCC-CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceE
Confidence 3444444433 3567888886643322 222322 14677766553 134444432222 2456899
Q ss_pred EEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 80 LVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 80 lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
+|+||||.|-... .+.+...++.-|+.+-+++.+
T Consensus 86 viIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 86 VIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp EEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred EEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 9999999986543 344555666555555555554
No 122
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=79.71 E-value=3.7 Score=38.23 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=51.5
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEE-EEECCcchHHHHHHHHHcCCcEeee----chHHHHHHHHhcCCccCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSM-LLVGGVEVKADVKKIEEEGANLLIG----TPGRLYDIMERMDVLDFR 75 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~IlV~----TP~~l~~~~~~~~~~~~~ 75 (184)
++||++||++-|..+...+... ++++. .++|. ..+ .....++..+|||| |. .+ . ..+|+.
T Consensus 311 ~~LVF~~s~~~a~~l~~~L~~~-----g~~~~~~lhg~--rr~-l~~F~~G~~~VLVatas~Td-----vl-a-rGIDip 375 (1104)
T 4ddu_A 311 GILIFAQTEEEGKELYEYLKRF-----KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYYG-----KL-T-RGVDLP 375 (1104)
T ss_dssp SEEEEESSSHHHHHHHHHHHHT-----TCCEEESSSSH--HHH-HHHHHHTSCSEEEEETTTHH-----HH-C-CSCCCT
T ss_pred CEEEEECcHHHHHHHHHHHHhC-----CCCeeeEecCc--HHH-HHHHHCCCCCEEEEecCCCC-----ee-E-ecCcCC
Confidence 4799999999999999888875 46666 55552 223 55555778999999 54 12 2 689999
Q ss_pred C-ceEEEechhh
Q 029993 76 N-LVILVLDEAD 86 (184)
Q Consensus 76 ~-l~~lVvDEaD 86 (184)
+ +.++|.-+.=
T Consensus 376 ~~V~~VI~~d~P 387 (1104)
T 4ddu_A 376 ERIKYVIFWGTP 387 (1104)
T ss_dssp TTCCEEEEESCC
T ss_pred CCCCEEEEECCC
Confidence 9 8988765443
No 123
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=79.10 E-value=1.2 Score=38.63 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=46.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhc-CCCceEEEEECC--------cchHHHHHH---HHHcCCcEeeechHHHHHHHHhc
Q 029993 2 GMIISPTRELSAQIYHVAQPFIST-LPDVKSMLLVGG--------VEVKADVKK---IEEEGANLLIGTPGRLYDIMERM 69 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~-~~~~~~~~~~~~--------~~~~~~~~~---l~~~~~~IlV~TP~~l~~~~~~~ 69 (184)
+||.++|+..+..+.+.+...... ..++++..++|+ .+..++... ..++..+|||||-. -.
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~------~~- 475 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTV------AE- 475 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECS------CC-
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccc------cc-
Confidence 799999999999999988864111 115778888887 554443332 22356899999962 12
Q ss_pred CCccCCCceEEEe
Q 029993 70 DVLDFRNLVILVL 82 (184)
Q Consensus 70 ~~~~~~~l~~lVv 82 (184)
.++|+.++.++|.
T Consensus 476 ~GIDip~v~~VI~ 488 (699)
T 4gl2_A 476 EGLDIKECNIVIR 488 (699)
T ss_dssp TTSCCCSCCCCEE
T ss_pred cCCccccCCEEEE
Confidence 5678888887763
No 124
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=78.57 E-value=1.4 Score=31.80 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=33.8
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
+.-.++++||.+.-++......+..+++.+.+..|+++.|-
T Consensus 85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith 125 (173)
T 3kta_B 85 KPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITL 125 (173)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred CCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 34579999999999998888888888888877788887754
No 125
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=78.10 E-value=0.44 Score=39.57 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
++|++||++-|..++..+... +..+..++|+....+.. ....++..+|||||.. +. ..+|+.++.
T Consensus 336 ~lvF~~s~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~-----~~--~GlDip~v~ 403 (479)
T 3fmp_B 336 AMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV-----CA--RGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEeCcHHHHHHHHHHHHhC-----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccc-----cc--cCCccccCC
Confidence 689999999999988888775 45677778776543332 2233457899999961 22 578888888
Q ss_pred EEE
Q 029993 79 ILV 81 (184)
Q Consensus 79 ~lV 81 (184)
++|
T Consensus 404 ~VI 406 (479)
T 3fmp_B 404 VVI 406 (479)
T ss_dssp ---
T ss_pred EEE
Confidence 876
No 126
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=77.93 E-value=7.2 Score=34.05 Aligned_cols=75 Identities=7% Similarity=0.136 Sum_probs=51.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhc--CC-----------------------------CceEEEEECCcchHHHHHH---
Q 029993 1 MGMIISPTRELSAQIYHVAQPFIST--LP-----------------------------DVKSMLLVGGVEVKADVKK--- 46 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~--- 46 (184)
++||++||++-+..+...+.+.... ++ +..+..++|+....++...
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 4799999999999999888865321 00 1247778888775544322
Q ss_pred HHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEe
Q 029993 47 IEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVL 82 (184)
Q Consensus 47 l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVv 82 (184)
..++...|+|||.- + . ..+|+..+.++|-
T Consensus 334 f~~g~~~vlvaT~~-----l-~-~Gidip~~~~VI~ 362 (715)
T 2va8_A 334 FRQRKIKVIVATPT-----L-A-AGVNLPARTVIIG 362 (715)
T ss_dssp HHTTCSCEEEECGG-----G-G-GSSCCCBSEEEEC
T ss_pred HHcCCCeEEEEChH-----H-h-cccCCCceEEEEe
Confidence 23467899999972 1 2 5788888888664
No 127
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.89 E-value=1.5 Score=34.49 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=31.4
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
.+-+.+++||+|. ++......+...++..++...+++.|...+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 3667999999999 555567777888888777777777665544
No 128
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=77.76 E-value=2.4 Score=33.90 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=43.9
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHH---HHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKK---IEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||+++|++-+..+++.+.+. ++.+..++|+....++... ..++..+|||+|.. -. ..+|+.++.
T Consensus 283 ~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~-~Gidip~v~ 350 (414)
T 3eiq_A 283 AVIFINTRRKVDWLTEKMHAR-----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL------LA-RGIDVQQVS 350 (414)
T ss_dssp CEEECSCHHHHHHHHHHHHTT-----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS------CC---CCGGGCS
T ss_pred EEEEeCCHHHHHHHHHHHHhc-----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc------cc-cCCCccCCC
Confidence 689999999999998877663 5677888888765444332 22356789999972 12 578888888
Q ss_pred EEEe
Q 029993 79 ILVL 82 (184)
Q Consensus 79 ~lVv 82 (184)
++|.
T Consensus 351 ~Vi~ 354 (414)
T 3eiq_A 351 LVIN 354 (414)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8874
No 129
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=77.60 E-value=3.9 Score=33.97 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=47.3
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEEC--------CcchHHH---HHHHHH-cCCcEeeechHHHHHHHHh
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVG--------GVEVKAD---VKKIEE-EGANLLIGTPGRLYDIMER 68 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~---~~~l~~-~~~~IlV~TP~~l~~~~~~ 68 (184)
.+||++++++-+..+.+.+...+.. +.+++..+.| +.+..++ .....+ +..+|||||.. -.
T Consensus 391 k~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~------~~ 463 (555)
T 3tbk_A 391 KTILFVKTRALVDALKKWIEENPAL-SFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSV------AD 463 (555)
T ss_dssp CEEEECSSHHHHHHHHHHHHHCGGG-TTCCEEECCC--------------------------CCSEEEECCC------TT
T ss_pred eEEEEeCcHHHHHHHHHHHhhCcCc-CceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcch------hh
Confidence 3799999999999999999987432 2455555555 3332222 222333 56899999962 12
Q ss_pred cCCccCCCceEEEechh
Q 029993 69 MDVLDFRNLVILVLDEA 85 (184)
Q Consensus 69 ~~~~~~~~l~~lVvDEa 85 (184)
.++|+.++.++|.=+.
T Consensus 464 -~GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 464 -EGIDIAECNLVILYEY 479 (555)
T ss_dssp -CCEETTSCSEEEEESC
T ss_pred -cCCccccCCEEEEeCC
Confidence 6789999998886443
No 130
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=77.30 E-value=6.1 Score=34.60 Aligned_cols=74 Identities=9% Similarity=0.131 Sum_probs=50.2
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcC-------------C---------------CceEEEEECCcchHHHHH---HHHH
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTL-------------P---------------DVKSMLLVGGVEVKADVK---KIEE 49 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~-------------~---------------~~~~~~~~~~~~~~~~~~---~l~~ 49 (184)
++||++|||+-+..+...+.+..... . ...+..++|+....++.. ...+
T Consensus 239 ~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 318 (720)
T 2zj8_A 239 GALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK 318 (720)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT
T ss_pred CEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHC
Confidence 47999999999999998888653210 0 123777888876554432 2334
Q ss_pred cCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 50 EGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+..+|+|||.- +. ..+|+..+.++|
T Consensus 319 g~~~vlvaT~~-----l~--~Gvdip~~~~VI 343 (720)
T 2zj8_A 319 GIIKAVVATPT-----LS--AGINTPAFRVII 343 (720)
T ss_dssp TSSCEEEECST-----TG--GGCCCCBSEEEE
T ss_pred CCCeEEEECcH-----hh--ccCCCCceEEEE
Confidence 67899999972 11 467888887755
No 131
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=76.95 E-value=2.2 Score=36.96 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=43.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEEC--------CcchHHHHH---HHHH-cCCcEeeechHHHHHHHHh
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVG--------GVEVKADVK---KIEE-EGANLLIGTPGRLYDIMER 68 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~---~l~~-~~~~IlV~TP~~l~~~~~~ 68 (184)
.+||.+++++-|..+.+.+...+. .+.+++..++| +.+..++.. ...+ +..+|||+|-. -.
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~-~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v------~~ 472 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPK-LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV------AD 472 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTT-CCSCCEEC-----------------------------CCSCSEEEES------SC
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCC-ccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEech------hh
Confidence 379999999999999999988642 23477777765 443333222 2223 56899999962 22
Q ss_pred cCCccCCCceEEEechh
Q 029993 69 MDVLDFRNLVILVLDEA 85 (184)
Q Consensus 69 ~~~~~~~~l~~lVvDEa 85 (184)
.++|+.++.++|.-+.
T Consensus 473 -~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 473 -EGIDIAQCNLVILYEY 488 (696)
T ss_dssp -CC---CCCSEEEEESC
T ss_pred -cCCcCccCCEEEEeCC
Confidence 6789999998886444
No 132
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=76.11 E-value=1.1 Score=37.20 Aligned_cols=67 Identities=12% Similarity=0.040 Sum_probs=44.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
.+||++||++-|..+++.+.+. ++++..+.|... ........++..+|||||.- + . ..+|+.. .++
T Consensus 192 ~~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh~~~R-~~~~~~f~~g~~~iLVaT~v-~-----~-~GiDip~-~~V 257 (459)
T 2z83_A 192 KTVWFVASVKMGNEIAMCLQRA-----GKKVIQLNRKSY-DTEYPKCKNGDWDFVITTDI-S-----E-MGANFGA-SRV 257 (459)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEEESTTCC-CCCGGGSSSCCCSEEEESSC-C---------CCCSC-SEE
T ss_pred CEEEEeCChHHHHHHHHHHHhc-----CCcEEecCHHHH-HHHHhhccCCCceEEEECCh-H-----H-hCeecCC-CEE
Confidence 4799999999999999888875 567777777532 12222223457899999962 1 1 4677777 555
Q ss_pred E
Q 029993 81 V 81 (184)
Q Consensus 81 V 81 (184)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 5
No 133
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=76.06 E-value=11 Score=34.85 Aligned_cols=118 Identities=9% Similarity=0.037 Sum_probs=69.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhh-------cCCCceEEEEECCcc---------------------hH------------
Q 029993 2 GMIISPTRELSAQIYHVAQPFIS-------TLPDVKSMLLVGGVE---------------------VK------------ 41 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~-------~~~~~~~~~~~~~~~---------------------~~------------ 41 (184)
|+|+|+|++-|...++.+.++.. ..+++++..++++.. ..
T Consensus 540 amVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dy 619 (1038)
T 2w00_A 540 AMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREY 619 (1038)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHH
Confidence 79999999999999999999873 223467765554321 00
Q ss_pred --------------------HHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhccchHHHHHHHH
Q 029993 42 --------------------ADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYII 101 (184)
Q Consensus 42 --------------------~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~ 101 (184)
.-.....++..+|||+|-- +. .++|...+..+.+|-- + .....+..+-
T Consensus 620 n~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~-ll------tGfDiP~l~tlylDkp---l--~~~~liQaIG 687 (1038)
T 2w00_A 620 NSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGM-FL------TGFDAPTLNTLFVDKN---L--RYHGLMQAFS 687 (1038)
T ss_dssp HHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESST-TS------SSCCCTTEEEEEEESC---C--CHHHHHHHHH
T ss_pred HHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcch-HH------hCcCcccccEEEEccC---C--Cccceeehhh
Confidence 0012233457899999962 21 5788888988888733 1 2233333333
Q ss_pred HhCCC-----CceEEEEeeeCchHHHHHHHHhCCC
Q 029993 102 SRLPK-----LRRTGLFSATQTEAVEELSKAGLRN 131 (184)
Q Consensus 102 ~~l~~-----~~q~i~~SAT~~~~v~~~~~~~~~~ 131 (184)
+-.+. ..=.++.=..+..++..-...|...
T Consensus 688 RtnR~~~~~K~~G~IVdf~~~~~~l~~Al~~y~~~ 722 (1038)
T 2w00_A 688 RTNRIYDATKTFGNIVTFRDLERSTIDAITLFGDK 722 (1038)
T ss_dssp TTCCCCCTTCCSEEEEESSCCHHHHHHHHHHTSCS
T ss_pred ccCcCCCCCCCcEEEEEccccHHHHHHHHHHHhCC
Confidence 32221 1122333345667777667766653
No 134
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=74.39 E-value=2.2 Score=37.07 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=26.8
Q ss_pred cCCcEeeechHHHHHHHHhcC-----CccCCCceEEEechhhHhhc
Q 029993 50 EGANLLIGTPGRLYDIMERMD-----VLDFRNLVILVLDEADRLLD 90 (184)
Q Consensus 50 ~~~~IlV~TP~~l~~~~~~~~-----~~~~~~l~~lVvDEaD~l~~ 90 (184)
..+||||+.-..|++...... .+++ .=..+|+||||.|.+
T Consensus 174 ~~ADvVV~ny~ylld~~~r~~~~~~~~i~p-~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 174 PDADIVIAPYAYFLNRSVAEKFLSHWGVSR-NQIVIILDEAHNLPD 218 (620)
T ss_dssp GGCSEEEEEHHHHTCHHHHHHHHHHHTCCG-GGEEEEETTGGGHHH
T ss_pred hcCCEEEeCchhhcCHHHHHHHHHhhccCc-CCeEEEEECCCchHH
Confidence 568999999987655432201 1122 235899999999975
No 135
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=73.35 E-value=2.1 Score=37.57 Aligned_cols=64 Identities=8% Similarity=0.131 Sum_probs=46.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
++||+++|++-+..+++.+++. ++++..++|+....+. .+++.+|||+|.- +. ..+|+. +.++
T Consensus 398 ~vLVFv~Tr~~ae~la~~L~~~-----g~~v~~lHG~l~q~er----~~~~~~VLVATdV-----ae--rGIDId-V~~V 460 (666)
T 3o8b_A 398 RHLIFCHSKKKCDELAAKLSGL-----GINAVAYYRGLDVSVI----PTIGDVVVVATDA-----LM--TGYTGD-FDSV 460 (666)
T ss_dssp EEEEECSCHHHHHHHHHHHHTT-----TCCEEEECTTSCGGGS----CSSSCEEEEECTT-----HH--HHCCCC-BSEE
T ss_pred cEEEEeCCHHHHHHHHHHHHhC-----CCcEEEecCCCCHHHH----HhCCCcEEEECCh-----HH--ccCCCC-CcEE
Confidence 3799999999999998888764 5788889988765432 2356799999972 22 356664 7776
Q ss_pred E
Q 029993 81 V 81 (184)
Q Consensus 81 V 81 (184)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 136
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=72.21 E-value=16 Score=26.55 Aligned_cols=58 Identities=10% Similarity=0.026 Sum_probs=39.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcch-HHHHHHHHHcCCcEeeechHHHHHH
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEV-KADVKKIEEEGANLLIGTPGRLYDI 65 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~IlV~TP~~l~~~ 65 (184)
.++++|..+|+....+.+.++ +..+....++.+. -+..+.+ ..++||+|+.-+.-..+
T Consensus 7 I~~iapy~~l~~~~~~i~~e~-----~~~i~i~~~~l~~~v~~a~~~-~~~~dVIISRGgta~~l 65 (196)
T 2q5c_A 7 IALISQNENLLNLFPKLALEK-----NFIPITKTASLTRASKIAFGL-QDEVDAIISRGATSDYI 65 (196)
T ss_dssp EEEEESCHHHHHHHHHHHHHH-----TCEEEEEECCHHHHHHHHHHH-TTTCSEEEEEHHHHHHH
T ss_pred EEEEEccHHHHHHHHHHHhhh-----CCceEEEECCHHHHHHHHHHh-cCCCeEEEECChHHHHH
Confidence 368999999999888877765 2355556666542 2333445 67999999887654443
No 137
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=72.18 E-value=1.1 Score=37.81 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=45.3
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchH---HHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVK---ADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
.+||++++++-|..+...+.+. +..+..++|+.... .......++..+|||||. ++. ..+|+.++
T Consensus 359 ~~LVF~~s~~~a~~l~~~L~~~-----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~--~GiDip~v 426 (508)
T 3fho_A 359 QSIIFCKKKDTAEEIARRMTAD-----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIA--RGIDVSQV 426 (508)
T ss_dssp CEEEBCSSTTTTTHHHHHHTTT-----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC------------CCCTTC
T ss_pred cEEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhh--cCCCccCC
Confidence 4799999999999888777653 45677777765432 223344456789999997 222 57899999
Q ss_pred eEEEec
Q 029993 78 VILVLD 83 (184)
Q Consensus 78 ~~lVvD 83 (184)
.++|..
T Consensus 427 ~~VI~~ 432 (508)
T 3fho_A 427 NLVVNY 432 (508)
T ss_dssp CEEEC-
T ss_pred CEEEEE
Confidence 998853
No 138
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=71.60 E-value=6.4 Score=34.35 Aligned_cols=75 Identities=8% Similarity=0.051 Sum_probs=50.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcC-C------------------------CceEEEEECCcchHHHHHH---HHHcCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTL-P------------------------DVKSMLLVGGVEVKADVKK---IEEEGA 52 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~-~------------------------~~~~~~~~~~~~~~~~~~~---l~~~~~ 52 (184)
++||++||++-+..+...+.+....+ + +..+..++|+....++... ..++..
T Consensus 244 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~ 323 (702)
T 2p6r_A 244 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI 323 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCC
Confidence 47999999999999998887653210 0 1246667888765444322 234678
Q ss_pred cEeeechHHHHHHHHhcCCccCCCceEEEe
Q 029993 53 NLLIGTPGRLYDIMERMDVLDFRNLVILVL 82 (184)
Q Consensus 53 ~IlV~TP~~l~~~~~~~~~~~~~~l~~lVv 82 (184)
+|+|+|.- -. ..+|+..+.++|-
T Consensus 324 ~vlvaT~~------l~-~Gidip~~~~VI~ 346 (702)
T 2p6r_A 324 KVVVATPT------LA-AGVNLPARRVIVR 346 (702)
T ss_dssp CEEEECST------TT-SSSCCCBSEEEEC
T ss_pred eEEEECcH------Hh-ccCCCCceEEEEc
Confidence 99999982 12 5788888887654
No 139
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=71.17 E-value=4.1 Score=33.90 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=35.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEEC--------CcchHHH---HHHHHH-cCCcEeeechHHHHHHHHh
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVG--------GVEVKAD---VKKIEE-EGANLLIGTPGRLYDIMER 68 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~---~~~l~~-~~~~IlV~TP~~l~~~~~~ 68 (184)
.+||++++++.+..+.+.+.+... ++++++..+.| +.+..++ .....+ +..+|||||.. + .
T Consensus 392 k~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~-~-----~ 464 (556)
T 4a2p_A 392 RTLLFAKTRALVSALKKCMEENPI-LNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV-A-----D 464 (556)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCSG-GGSCCEEC------------------------------CCEEEEEC---------
T ss_pred eEEEEEccHHHHHHHHHHHHhCCC-cceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCc-h-----h
Confidence 379999999999999998877522 12344444443 3332222 222233 56799999962 1 2
Q ss_pred cCCccCCCceEEEechh
Q 029993 69 MDVLDFRNLVILVLDEA 85 (184)
Q Consensus 69 ~~~~~~~~l~~lVvDEa 85 (184)
.++|+.++.++|.-+.
T Consensus 465 -~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 465 -EGIDIVQCNLVVLYEY 480 (556)
T ss_dssp ---------CEEEEETC
T ss_pred -cCCCchhCCEEEEeCC
Confidence 5788889998886444
No 140
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=70.15 E-value=5.7 Score=36.72 Aligned_cols=75 Identities=23% Similarity=0.260 Sum_probs=49.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc-eE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL-VI 79 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l-~~ 79 (184)
.+||+|+|++-|..+.+.+... +++..++|+.. .......++..+|||||... .+.+. ..+|+.++ .+
T Consensus 277 ~~LVF~~t~~~a~~l~~~L~~~------~~v~~lhg~~~--~~l~~F~~G~~~VLVaTas~-Tdv~~--rGIDip~VI~~ 345 (1054)
T 1gku_B 277 GGIIYARTGEEAEEIYESLKNK------FRIGIVTATKK--GDYEKFVEGEIDHLIGTAHY-YGTLV--RGLDLPERIRF 345 (1054)
T ss_dssp CEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSS--HHHHHHHHTSCSEEEEECC---------CCSCCTTTCCE
T ss_pred CEEEEEcCHHHHHHHHHHHhhc------cCeeEEeccHH--HHHHHHHcCCCcEEEEecCC-CCeeE--eccccCCcccE
Confidence 4799999999888887665543 56778888764 33444556789999994100 01111 68899995 88
Q ss_pred EEechhh
Q 029993 80 LVLDEAD 86 (184)
Q Consensus 80 lVvDEaD 86 (184)
+|.-++.
T Consensus 346 VI~~~~P 352 (1054)
T 1gku_B 346 AVFVGCP 352 (1054)
T ss_dssp EEEESCC
T ss_pred EEEeCCC
Confidence 8765554
No 141
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=69.78 E-value=0.74 Score=41.23 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=48.9
Q ss_pred CEEEEeccHHHH-----HHHHHHHHHhhh-cCCCceEEEEECCcch---HHHHHHHHHcCCcEeeechHHHHHHHHhcCC
Q 029993 1 MGMIISPTRELS-----AQIYHVAQPFIS-TLPDVKSMLLVGGVEV---KADVKKIEEEGANLLIGTPGRLYDIMERMDV 71 (184)
Q Consensus 1 ~alIl~PtreLa-----~Qi~~~~~~l~~-~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~ 71 (184)
+++|++|+.+-+ .........+.. .+++.++..++|+... ........++..+|+|||.- -. ..
T Consensus 580 qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~v------ie-~G 652 (780)
T 1gm5_A 580 QAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTV------IE-VG 652 (780)
T ss_dssp CBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSC------CC-SC
T ss_pred cEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCC------CC-cc
Confidence 456788865432 123333444544 4567888888887543 33334444567899999961 12 68
Q ss_pred ccCCCceEEEechhhH
Q 029993 72 LDFRNLVILVLDEADR 87 (184)
Q Consensus 72 ~~~~~l~~lVvDEaD~ 87 (184)
+|+.++.++|+..++.
T Consensus 653 IDiP~v~~VIi~d~~r 668 (780)
T 1gm5_A 653 IDVPRANVMVIENPER 668 (780)
T ss_dssp SCCTTCCEEEBCSCSS
T ss_pred ccCCCCCEEEEeCCCC
Confidence 8999999999988875
No 142
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=68.97 E-value=4.9 Score=36.77 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=53.7
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHH---HHHHHHcC--CcEeeechHHHHHHHHhcCCccCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKAD---VKKIEEEG--ANLLIGTPGRLYDIMERMDVLDFR 75 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~--~~IlV~TP~~l~~~~~~~~~~~~~ 75 (184)
.++|++++++-+..+...+... . ++++..++|+.+..+. .....++. ++|+|+|.- . . ..+|+.
T Consensus 505 k~iVF~~~~~~~~~l~~~L~~~---~-g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v--~----~-~GlDl~ 573 (968)
T 3dmq_A 505 KVLVICAKAATALQLEQVLRER---E-GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEI--G----S-EGRNFQ 573 (968)
T ss_dssp CCCEECSSTHHHHHHHHHHHTT---T-CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCC--T----T-CSSCCT
T ss_pred CEEEEeCcHHHHHHHHHHHHHH---c-CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecch--h----h-cCCCcc
Confidence 3689999999998888777642 2 6788899998654333 22333333 899999942 1 2 678999
Q ss_pred CceEEEechhh
Q 029993 76 NLVILVLDEAD 86 (184)
Q Consensus 76 ~l~~lVvDEaD 86 (184)
++..+|+-+.+
T Consensus 574 ~~~~VI~~d~p 584 (968)
T 3dmq_A 574 FASHMVMFDLP 584 (968)
T ss_dssp TCCEEECSSCC
T ss_pred cCcEEEEecCC
Confidence 99999987765
No 143
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=68.87 E-value=12 Score=26.49 Aligned_cols=40 Identities=28% Similarity=0.195 Sum_probs=28.1
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
.+-..+++||+|.+... ....+..++...+....+++.+.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 56679999999987543 45566777777666666666544
No 144
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=68.56 E-value=17 Score=30.80 Aligned_cols=77 Identities=10% Similarity=0.091 Sum_probs=48.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcC---CCceEEEEECCcch-H-HHHHHHHHcCCc---EeeechHHHHHHHHhcCCcc
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTL---PDVKSMLLVGGVEV-K-ADVKKIEEEGAN---LLIGTPGRLYDIMERMDVLD 73 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~---~~~~~~~~~~~~~~-~-~~~~~l~~~~~~---IlV~TP~~l~~~~~~~~~~~ 73 (184)
+||++++++-|..+++.+.+..... .+-.+..++|+... . +......++..+ |+|+|- . + . ..+|
T Consensus 442 ~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-~----l-~-~GiD 514 (590)
T 3h1t_A 442 TIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-L----L-T-TGVD 514 (590)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-T----T-T-TTCC
T ss_pred EEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-h----h-h-cCcc
Confidence 7999999999999999998875421 12235556665542 1 122233222223 677764 1 1 1 5789
Q ss_pred CCCceEEEechh
Q 029993 74 FRNLVILVLDEA 85 (184)
Q Consensus 74 ~~~l~~lVvDEa 85 (184)
+..+..+|++..
T Consensus 515 ip~v~~Vi~~~~ 526 (590)
T 3h1t_A 515 APTCKNVVLARV 526 (590)
T ss_dssp CTTEEEEEEESC
T ss_pred chheeEEEEEec
Confidence 999999998655
No 145
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=68.47 E-value=1.2 Score=31.08 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=30.6
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCC-ceEEEEeeeCc-hHH---HHHHHHh
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKL-RRTGLFSATQT-EAV---EELSKAG 128 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~-~q~i~~SAT~~-~~v---~~~~~~~ 128 (184)
+.+.+++++||.+.+.... ...+..+++.+... ...+++++..+ .+. .++.+++
T Consensus 81 ~~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl 139 (149)
T 2kjq_A 81 AFEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRM 139 (149)
T ss_dssp GGGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHG
T ss_pred HhCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHH
Confidence 3457899999999854433 55666666655332 33244455543 322 4555543
No 146
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=68.44 E-value=1 Score=35.75 Aligned_cols=69 Identities=12% Similarity=0.165 Sum_probs=0.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHH---HHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADV---KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+||+++|++-+..+.+.+.+. ++.+..++|+....+.. ....++..+|+|+|.. +. ..+|+.++.
T Consensus 262 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~--~Gldi~~~~ 329 (394)
T 1fuu_A 262 AVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----LA--RGIDVQQVS 329 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECCh-----hh--cCCCcccCC
Confidence 689999999999888877764 45677777775543332 2233456789999962 22 467888888
Q ss_pred EEEe
Q 029993 79 ILVL 82 (184)
Q Consensus 79 ~lVv 82 (184)
++|.
T Consensus 330 ~Vi~ 333 (394)
T 1fuu_A 330 LVIN 333 (394)
T ss_dssp ----
T ss_pred EEEE
Confidence 7764
No 147
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=67.74 E-value=9.6 Score=28.55 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=21.0
Q ss_pred chHHHHHHHHhcCCccCCCceEEEechhh
Q 029993 58 TPGRLYDIMERMDVLDFRNLVILVLDEAD 86 (184)
Q Consensus 58 TP~~l~~~~~~~~~~~~~~l~~lVvDEaD 86 (184)
||..+.+.+.. ..++++++.++-+||-=
T Consensus 44 tp~~~y~~L~~-~~idw~~v~~f~~DEr~ 71 (226)
T 3lwd_A 44 TPKPFFTSLAA-KALPWARVDVTLADERW 71 (226)
T ss_dssp TTHHHHHHHHT-SCSCGGGEEEEESEEES
T ss_pred CHHHHHHHHHh-cCCCchhEEEEEeeecc
Confidence 44555555555 67999999999999953
No 148
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=65.02 E-value=19 Score=25.90 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=46.4
Q ss_pred HHHHHhhhcCCCceEEEEECCcch--HHHHHH----HHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhhHhhc
Q 029993 17 HVAQPFISTLPDVKSMLLVGGVEV--KADVKK----IEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLD 90 (184)
Q Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~----l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~ 90 (184)
+.+..+... +..+..+++|..-. ..-... +...+..++..+...+...+.. ..-.+.+-..+++||+|.+..
T Consensus 41 ~~l~~~~~~-~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 41 GALKSAASG-DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA-LLEGLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp HHHHHHHHT-CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG-GGTTGGGSSEEEEETGGGGTT
T ss_pred HHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH-HHHhccCCCEEEEeccccccC
Confidence 344444332 24567778875432 211122 2223455665555444332211 011234567999999999864
Q ss_pred cc-hHHHHHHHHHhCCC-CceEEEEeeeC
Q 029993 91 MG-FQKQISYIISRLPK-LRRTGLFSATQ 117 (184)
Q Consensus 91 ~~-~~~~l~~i~~~l~~-~~q~i~~SAT~ 117 (184)
.. ....+..+++.... ....++++++.
T Consensus 119 ~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 119 HPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 32 24445555444332 22324444443
No 149
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=64.90 E-value=8.6 Score=28.90 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=20.5
Q ss_pred chHHHHHHHHhcCCccCCCceEEEechh
Q 029993 58 TPGRLYDIMERMDVLDFRNLVILVLDEA 85 (184)
Q Consensus 58 TP~~l~~~~~~~~~~~~~~l~~lVvDEa 85 (184)
||..+.+.+.. ..++++++.++-+||-
T Consensus 45 tp~~~y~~L~~-~~i~w~~v~~f~~DEr 71 (232)
T 3lhi_A 45 SPIAFFNALSQ-KDLDWKNVGITLADER 71 (232)
T ss_dssp TTHHHHHHHHT-SCCCGGGEEEEESEEE
T ss_pred CHHHHHHHHHh-cCCCchheEEEEeeec
Confidence 44455555555 6799999999999994
No 150
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.37 E-value=7.9 Score=30.13 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=27.2
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
+-+.+++||+|.+... ....+..+++..+....+++.+.
T Consensus 133 ~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 4579999999987543 35566677777766666666543
No 151
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=64.22 E-value=6.4 Score=34.96 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=39.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEE--------ECCcchHHHH---HHHHH-cCCcEeeechHHHHHHHHhc
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLL--------VGGVEVKADV---KKIEE-EGANLLIGTPGRLYDIMERM 69 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~---~~l~~-~~~~IlV~TP~~l~~~~~~~ 69 (184)
+||+++++..+..+.+.+.+... ++++++..+ .|+.+..++. ....+ +..+|||+|-. + .
T Consensus 634 vLIF~~~~~~~~~L~~~L~~~~~-~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~-~-----~- 705 (797)
T 4a2q_A 634 TLLFAKTRALVSALKKCMEENPI-LNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV-A-----D- 705 (797)
T ss_dssp EEEEESSHHHHHHHHHHHHTCST-TCSCCCEEC----------------------------CCSEEEEECC---------
T ss_pred EEEEECcHHHHHHHHHHHHhCcc-cccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCc-h-----h-
Confidence 79999999999999999887421 123333333 3333333222 22233 56899999962 1 1
Q ss_pred CCccCCCceEEEechh
Q 029993 70 DVLDFRNLVILVLDEA 85 (184)
Q Consensus 70 ~~~~~~~l~~lVvDEa 85 (184)
.++|+..+.++|.=+.
T Consensus 706 ~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 706 EGIDIVQCNLVVLYEY 721 (797)
T ss_dssp -----CCCSEEEEESC
T ss_pred cCCCchhCCEEEEeCC
Confidence 5788889998886444
No 152
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=63.45 E-value=3.7 Score=31.94 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=28.6
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
.+-+.+++||+|.+........+...++..+...++++.+..
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 467899999999986233455666666666566676664443
No 153
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=62.62 E-value=11 Score=28.41 Aligned_cols=27 Identities=26% Similarity=0.578 Sum_probs=20.6
Q ss_pred chHHHHHHHHhcCCccCCCceEEEechh
Q 029993 58 TPGRLYDIMERMDVLDFRNLVILVLDEA 85 (184)
Q Consensus 58 TP~~l~~~~~~~~~~~~~~l~~lVvDEa 85 (184)
||..+.+.+.. ..++++++.++-+||-
T Consensus 48 tp~~~y~~L~~-~~idw~~v~~f~~DEr 74 (233)
T 3nwp_A 48 TPLKLFQLLSM-KSIDWSDVYITLADER 74 (233)
T ss_dssp TTHHHHHHHHH-CCSCGGGEEEEESEEE
T ss_pred CHHHHHHHHHh-cCCChhHeEEEeCeec
Confidence 44555555555 6899999999999995
No 154
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=61.57 E-value=8.5 Score=27.59 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=24.1
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
.-.++|+||+|.+-. .....+...+...+....+++.+.
T Consensus 126 ~~~vlviDe~~~l~~-~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 126 RFKVYLIDEVHMLSR-HSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSEEEEEETGGGSCH-HHHHHHHHHHHSCCTTEEEEEEES
T ss_pred CceEEEEECcccccH-HHHHHHHHHHhcCCCceEEEEEeC
Confidence 446899999998643 234455555555555555555543
No 155
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=61.55 E-value=15 Score=27.66 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=25.6
Q ss_pred CCceEEEechhhHhhcc-----ch-HHHHHHHHHhCC----CCceEEEEeeeCchH
Q 029993 75 RNLVILVLDEADRLLDM-----GF-QKQISYIISRLP----KLRRTGLFSATQTEA 120 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~-----~~-~~~l~~i~~~l~----~~~q~i~~SAT~~~~ 120 (184)
..-..+++||+|.|++. .. ...+..+...+. ...+++++++|=.++
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh
Confidence 34679999999998532 11 222333333332 345666666665543
No 156
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=61.19 E-value=32 Score=29.59 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=17.5
Q ss_pred EEEEeccHHHHHHHHHHHHHh
Q 029993 2 GMIISPTRELSAQIYHVAQPF 22 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l 22 (184)
.|+++||...+.++.+.+.+.
T Consensus 227 ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 227 VLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp EEEEESSHHHHHHHHHHHHTT
T ss_pred EEEEeCcHHHHHHHHHHHHhc
Confidence 689999999999998777654
No 157
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=60.78 E-value=9.7 Score=34.64 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=39.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEE--------CCcchHHHH---HHHHH-cCCcEeeechHHHHHHHHhc
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLV--------GGVEVKADV---KKIEE-EGANLLIGTPGRLYDIMERM 69 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~---~~l~~-~~~~IlV~TP~~l~~~~~~~ 69 (184)
+||.++|+..+..+.+.+.+... ++++++..+. |+.+..++. ....+ +..+|||+|-. . .
T Consensus 634 vLIF~~t~~~ae~L~~~L~~~~~-l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~-----~-~- 705 (936)
T 4a2w_A 634 TLLFAKTRALVSALKKCMEENPI-LNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV-----A-D- 705 (936)
T ss_dssp EEEEESSHHHHHHHHHHHHHCST-TSSCCCEEC----------------------------CCSEEEEECC---------
T ss_pred EEEEeCCHHHHHHHHHHHhhCcc-ccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCc-----h-h-
Confidence 79999999999999999988522 2234444433 333333322 22333 56899999961 1 1
Q ss_pred CCccCCCceEEEechh
Q 029993 70 DVLDFRNLVILVLDEA 85 (184)
Q Consensus 70 ~~~~~~~l~~lVvDEa 85 (184)
.++|+..+.++|.-+.
T Consensus 706 eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 706 EGIDIVQCNLVVLYEY 721 (936)
T ss_dssp ----CCCCSEEEEESC
T ss_pred cCCcchhCCEEEEeCC
Confidence 4677777877775433
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=60.66 E-value=18 Score=27.52 Aligned_cols=40 Identities=25% Similarity=0.221 Sum_probs=27.7
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
.+-+.+++||+|.+... ....+...++..+....+++.+.
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 56789999999997543 35556667777666666666543
No 159
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=60.66 E-value=16 Score=26.89 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=40.2
Q ss_pred CCceEEEechhhHhhccc--hHHHHHHHHHhCCCCceEEEEeeeCchHHHHHHHH
Q 029993 75 RNLVILVLDEADRLLDMG--FQKQISYIISRLPKLRRTGLFSATQTEAVEELSKA 127 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~--~~~~l~~i~~~l~~~~q~i~~SAT~~~~v~~~~~~ 127 (184)
....++|+||+-..+..+ -.+.+..+++.-|...-+|+.+-..|+++.+++..
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~ 173 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADT 173 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSE
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcc
Confidence 457899999998765543 34667778888888788888888888887777654
No 160
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=60.13 E-value=14 Score=27.68 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=20.1
Q ss_pred chHHHHHHHHhcCCccCCCceEEEechhh
Q 029993 58 TPGRLYDIMERMDVLDFRNLVILVLDEAD 86 (184)
Q Consensus 58 TP~~l~~~~~~~~~~~~~~l~~lVvDEaD 86 (184)
||..+.+.+.. ..++++++.++-+||-=
T Consensus 56 Tp~~ly~~L~~-~~i~w~~v~~f~~DEr~ 83 (232)
T 1vl1_A 56 TPLPVYEKLAE-QKFPWNRIHFFLSDERY 83 (232)
T ss_dssp THHHHHHHHTT-SCCCGGGEEEEESEEES
T ss_pred cHHHHHHHHHH-cCCChhHEEEEeCeEee
Confidence 45555555554 56889999999999863
No 161
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=59.46 E-value=10 Score=28.63 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=10.8
Q ss_pred eEEEechhhHhh
Q 029993 78 VILVLDEADRLL 89 (184)
Q Consensus 78 ~~lVvDEaD~l~ 89 (184)
.++++||+|.+.
T Consensus 112 ~vl~iDEid~l~ 123 (285)
T 3h4m_A 112 SIIFIDEIDAIA 123 (285)
T ss_dssp EEEEEETTHHHH
T ss_pred eEEEEECHHHhc
Confidence 589999999986
No 162
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=58.22 E-value=9.6 Score=29.14 Aligned_cols=37 Identities=16% Similarity=-0.002 Sum_probs=22.1
Q ss_pred eEEEechhhHhhcc--------chHHHHHHHHHhCCCCceEEEEe
Q 029993 78 VILVLDEADRLLDM--------GFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 78 ~~lVvDEaD~l~~~--------~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
..+++||+|.+... .....+..++..-+....+++.+
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 49999999998532 23344555555544444444443
No 163
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=57.60 E-value=25 Score=26.29 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=38.3
Q ss_pred EEEeccHH-HHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhc---CCccCCCce
Q 029993 3 MIISPTRE-LSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERM---DVLDFRNLV 78 (184)
Q Consensus 3 lIl~Ptre-La~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~---~~~~~~~l~ 78 (184)
+++.++.+ ++....+.+.+....- +--+..+.||+.. ..+.+.+... +.++++++.
T Consensus 4 ~~~~~~~~~l~~~aA~~i~~~i~~~-~~~~l~lsgGstp-------------------~~~~~~L~~~~~~~~~~w~~v~ 63 (238)
T 1y89_A 4 HKIFPTADAVVKSLADDMLAYSQQG-QPVHISLSGGSTP-------------------KMLFKLLASQPYANDIQWKNLH 63 (238)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTS-SCEEEEECCSHHH-------------------HHHHHHHTSTTHHHHSCGGGEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHhC-CCEEEEECCCccH-------------------HHHHHHHHhhhhccCCChhHeE
Confidence 45666654 7777777777665442 2334455555543 3344433321 247899999
Q ss_pred EEEechhh
Q 029993 79 ILVLDEAD 86 (184)
Q Consensus 79 ~lVvDEaD 86 (184)
++-+||-=
T Consensus 64 ~f~~DEr~ 71 (238)
T 1y89_A 64 FWWGDERC 71 (238)
T ss_dssp EEESEEES
T ss_pred EEeceecC
Confidence 99999863
No 164
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=56.50 E-value=23 Score=29.68 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=37.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECC-----------cch-HHHHH---HHHHcCCcEeeechHHHHH
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGG-----------VEV-KADVK---KIEEEGANLLIGTPGRLYD 64 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~-----------~~~-~~~~~---~l~~~~~~IlV~TP~~l~~ 64 (184)
.|||+|+...|.|.++.+..+.+ +- +..+-.. ... ..... .+.+....|+|+|...++.
T Consensus 42 ~lvv~~~~~~A~~l~~~l~~~~~---~~-v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 42 VVLIAPDMQNALRLHDEISQFTD---QM-VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 (483)
T ss_dssp EEEEESSHHHHHHHHHHHHHTCS---SC-EEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHB
T ss_pred EEEEeCCHHHHHHHHHHHHhhCC---Cc-EEEEeCcccccccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhh
Confidence 58999999999999999998753 22 3332221 011 11222 2334566799999988764
No 165
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.19 E-value=14 Score=28.92 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=28.1
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
..-+++|+||+|.|... ....+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999987543 4566777777777766666654
No 166
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=54.13 E-value=8.9 Score=29.77 Aligned_cols=89 Identities=13% Similarity=0.244 Sum_probs=43.7
Q ss_pred ceEEEEECCcch--HHHHHHHH----HcCCcEeeechHHHHHHHHh-c--CCcc-----CCCceEEEechhhHhhcc-ch
Q 029993 29 VKSMLLVGGVEV--KADVKKIE----EEGANLLIGTPGRLYDIMER-M--DVLD-----FRNLVILVLDEADRLLDM-GF 93 (184)
Q Consensus 29 ~~~~~~~~~~~~--~~~~~~l~----~~~~~IlV~TP~~l~~~~~~-~--~~~~-----~~~l~~lVvDEaD~l~~~-~~ 93 (184)
.....++|..-. ..-...+. ..+..++.-+...+...+.. . .... ..+...+++||+|.+... ..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~ 116 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERT 116 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHH
Confidence 456777875432 22222221 22566766665554332211 0 1110 234679999999998642 23
Q ss_pred HHHHHHHHHhCC-CCceEEEEeeeCc
Q 029993 94 QKQISYIISRLP-KLRRTGLFSATQT 118 (184)
Q Consensus 94 ~~~l~~i~~~l~-~~~q~i~~SAT~~ 118 (184)
...+..+++.+. ...++++ +++-+
T Consensus 117 ~~~l~~~l~~~~~~~~~iii-~~~~~ 141 (324)
T 1l8q_A 117 QIEFFHIFNTLYLLEKQIIL-ASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-EESSC
T ss_pred HHHHHHHHHHHHHCCCeEEE-EecCC
Confidence 444555554432 3345555 44533
No 167
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=54.05 E-value=8.5 Score=28.15 Aligned_cols=39 Identities=15% Similarity=0.034 Sum_probs=21.7
Q ss_pred ceEEEechhhHhhccc--hHHHHHHHHHhC----CCCceEEEEeee
Q 029993 77 LVILVLDEADRLLDMG--FQKQISYIISRL----PKLRRTGLFSAT 116 (184)
Q Consensus 77 l~~lVvDEaD~l~~~~--~~~~l~~i~~~l----~~~~q~i~~SAT 116 (184)
=..+|+||||.++... ..+. .+++..+ .+..++++++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~-~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKI-PENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCC-CHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchh-HHHHHHHHhcCcCCeEEEEECCC
Confidence 3489999999986432 1111 1223333 234577777665
No 168
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=53.28 E-value=48 Score=29.66 Aligned_cols=21 Identities=10% Similarity=0.115 Sum_probs=17.2
Q ss_pred EEEEeccHHHHHHHHHHHHHh
Q 029993 2 GMIISPTRELSAQIYHVAQPF 22 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l 22 (184)
.|+++||...|.++.+.+...
T Consensus 403 ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 403 VLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp EEEEESSHHHHHHHHHHHHTT
T ss_pred EEEEcCcHHHHHHHHHHHHHh
Confidence 689999999999987776654
No 169
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=53.18 E-value=12 Score=29.33 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=24.6
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
...-+.+|+||||.|-... .+.+...++.-+...-+++.+.
T Consensus 106 ~~~~kvviIdead~l~~~a-~naLLk~lEep~~~~~~Il~t~ 146 (334)
T 1a5t_A 106 LGGAKVVWVTDAALLTDAA-ANALLKTLEEPPAETWFFLATR 146 (334)
T ss_dssp TSSCEEEEESCGGGBCHHH-HHHHHHHHTSCCTTEEEEEEES
T ss_pred cCCcEEEEECchhhcCHHH-HHHHHHHhcCCCCCeEEEEEeC
Confidence 3567899999999985433 3344444554444445555443
No 170
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=52.31 E-value=9.3 Score=30.78 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=33.2
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
.++++||.+.=++......+..+++.+.+..|+++.|..
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~ 355 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHL 355 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 799999999988888888999988888777888887654
No 171
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=51.99 E-value=43 Score=23.75 Aligned_cols=38 Identities=8% Similarity=-0.005 Sum_probs=24.8
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeeeC
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSATQ 117 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~ 117 (184)
+..++++||++.+ +.++.+.+..+... ...+++++-+-
T Consensus 76 ~~dvviIDE~Q~~-~~~~~~~l~~l~~~---~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFF-NPSLFEVVKDLLDR---GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGS-CTTHHHHHHHHHHT---TCEEEEEEESB
T ss_pred CCCEEEEECcccC-CHHHHHHHHHHHHC---CCCEEEEeecc
Confidence 4679999999975 33466666666554 45666655543
No 172
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=51.56 E-value=13 Score=29.74 Aligned_cols=64 Identities=23% Similarity=0.231 Sum_probs=36.1
Q ss_pred CceEEEechhhHhhcc---chHHHHHHHHHhCCCC-ceEEEEeeeCch----HHHHHHHHhCCCC-eEEEEcc
Q 029993 76 NLVILVLDEADRLLDM---GFQKQISYIISRLPKL-RRTGLFSATQTE----AVEELSKAGLRNP-VRIEVRA 139 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~---~~~~~l~~i~~~l~~~-~q~i~~SAT~~~----~v~~~~~~~~~~~-~~i~~~~ 139 (184)
.-.++|+||||.++.. .+.+.+..+++..++. .-.++.|-.+.+ .+.+.++..+.+. ..|....
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~ 334 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQ 334 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSC
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCC
Confidence 3568999999999962 3566777777777552 334443333321 1222345555544 4444443
No 173
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=51.51 E-value=84 Score=28.07 Aligned_cols=21 Identities=5% Similarity=0.118 Sum_probs=18.2
Q ss_pred EEEEeccHHHHHHHHHHHHHh
Q 029993 2 GMIISPTRELSAQIYHVAQPF 22 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l 22 (184)
.|+++||...|.++.+.+.+.
T Consensus 407 ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 407 ILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp EEEEESSHHHHHHHHHHHHHT
T ss_pred EEEEcCcHHHHHHHHHHHHhh
Confidence 689999999999998887765
No 174
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=51.14 E-value=27 Score=31.33 Aligned_cols=53 Identities=11% Similarity=0.018 Sum_probs=36.2
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHH-HHcCCcEeeech
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI-EEEGANLLIGTP 59 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~IlV~TP 59 (184)
+||.+.|++-+..+.+.+.+. +++...+.|+....+..... ......|+|+|.
T Consensus 477 VLVFt~S~e~sE~Ls~~L~~~-----Gi~~~vLhgkq~~rE~~ii~~ag~~g~VtVATd 530 (822)
T 3jux_A 477 VLVGTTSIEKSELLSSMLKKK-----GIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATN 530 (822)
T ss_dssp EEEEESSHHHHHHHHHHHHTT-----TCCCEEECSCHHHHHHHHHHHHHSTTCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCEEEeeCCchHHHHHHHHhCCCCCeEEEEcc
Confidence 799999999999998877763 67788888874322221111 123457999996
No 175
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.03 E-value=10 Score=28.90 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=26.7
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
+-+.+|+||+|.+... ....+...++..+....+++.+.
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEeC
Confidence 4789999999997543 24445566666666667776553
No 176
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=50.86 E-value=23 Score=27.99 Aligned_cols=40 Identities=8% Similarity=0.116 Sum_probs=23.6
Q ss_pred CceEEEechhhHhhccchHHHHHHHHH--hCC-CCceEEEEeeeCc
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIIS--RLP-KLRRTGLFSATQT 118 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~--~l~-~~~q~i~~SAT~~ 118 (184)
....+++||+|.+.+++ .+..+++ ... ...-+|+.++|+.
T Consensus 132 ~~~ii~lDE~d~l~~q~---~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 132 RKTLILIQNPENLLSEK---ILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp CEEEEEEECCSSSCCTH---HHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CceEEEEecHHHhhcch---HHHHHHhcccccCCcEEEEEEecCcc
Confidence 44688999999998433 3333333 122 2345666777764
No 177
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=50.37 E-value=4.3 Score=28.14 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=11.3
Q ss_pred ceEEEechhhHhh
Q 029993 77 LVILVLDEADRLL 89 (184)
Q Consensus 77 l~~lVvDEaD~l~ 89 (184)
-..+++||+|.+.
T Consensus 116 ~~vl~iDe~~~l~ 128 (187)
T 2p65_A 116 QVVMFIDEIHTVV 128 (187)
T ss_dssp SEEEEETTGGGGS
T ss_pred ceEEEEeCHHHhc
Confidence 3689999999986
No 178
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=49.59 E-value=17 Score=28.99 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=31.9
Q ss_pred ceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 77 LVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 77 l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
..++++||.+.=++......+...+..+....|+++.|.
T Consensus 306 ~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th 344 (371)
T 3auy_A 306 VECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITH 344 (371)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEES
T ss_pred CCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEC
Confidence 679999999998888888888888888876678665543
No 179
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=49.54 E-value=20 Score=30.74 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=27.9
Q ss_pred CceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 76 NLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
...++|+|||..+ + ...+..+++.++...++++++-.
T Consensus 279 ~~dvlIIDEasml-~---~~~~~~Ll~~~~~~~~lilvGD~ 315 (574)
T 3e1s_A 279 PYDLLIVDEVSMM-G---DALMLSLLAAVPPGARVLLVGDT 315 (574)
T ss_dssp SCSEEEECCGGGC-C---HHHHHHHHTTSCTTCEEEEEECT
T ss_pred cCCEEEEcCccCC-C---HHHHHHHHHhCcCCCEEEEEecc
Confidence 5689999999854 2 45667788888888888887543
No 180
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=49.08 E-value=15 Score=30.25 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=26.0
Q ss_pred CceEEEechhhHhhcc-chHHHHHHHHHhC-CCCceEEEEeee
Q 029993 76 NLVILVLDEADRLLDM-GFQKQISYIISRL-PKLRRTGLFSAT 116 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~-~~~~~l~~i~~~l-~~~~q~i~~SAT 116 (184)
+...+++||+|.+.+. .....+..++..+ ....++++.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 6779999999998753 2344455555543 344566665543
No 181
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=49.05 E-value=16 Score=28.64 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=25.0
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
..-+.+++||+|.+-.. ....+...++..+....+++.+
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 44679999999987543 3455556666655555555544
No 182
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=48.95 E-value=5.8 Score=27.87 Aligned_cols=105 Identities=20% Similarity=0.149 Sum_probs=50.6
Q ss_pred HHHHHHHhhhcC--CCceEEEEECCcch--HHHHH----HHH-HcCCcEeeechHHHHHHHHh---cCCc-----cCCCc
Q 029993 15 IYHVAQPFISTL--PDVKSMLLVGGVEV--KADVK----KIE-EEGANLLIGTPGRLYDIMER---MDVL-----DFRNL 77 (184)
Q Consensus 15 i~~~~~~l~~~~--~~~~~~~~~~~~~~--~~~~~----~l~-~~~~~IlV~TP~~l~~~~~~---~~~~-----~~~~l 77 (184)
..+.+.++...+ +.-+...++|..-. ..-.. .+. ..+..++..+...+...+.. .+.. .+.+.
T Consensus 22 ~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (180)
T 3ec2_A 22 ALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNS 101 (180)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTC
T ss_pred HHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence 334455544433 12356777775322 11111 121 34555665555555443321 0111 14467
Q ss_pred eEEEechhhHh-hccchHHHHHHHHHhCC-CCceEEEEeeeCch
Q 029993 78 VILVLDEADRL-LDMGFQKQISYIISRLP-KLRRTGLFSATQTE 119 (184)
Q Consensus 78 ~~lVvDEaD~l-~~~~~~~~l~~i~~~l~-~~~q~i~~SAT~~~ 119 (184)
.++|+||.+.. ++......+..++.... ....+++.|...+.
T Consensus 102 ~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 102 PVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp SEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 89999999853 33334455666665553 33445554444443
No 183
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=47.86 E-value=25 Score=23.98 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=17.4
Q ss_pred ceEEEechhhHhhc-------cchHHHHHHHHH
Q 029993 77 LVILVLDEADRLLD-------MGFQKQISYIIS 102 (184)
Q Consensus 77 l~~lVvDEaD~l~~-------~~~~~~l~~i~~ 102 (184)
-.++++||+|.+.. ......+..++.
T Consensus 116 ~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~ 148 (195)
T 1jbk_A 116 NVILFIDELHTMVGAGKADGAMDAGNMLKPALA 148 (195)
T ss_dssp TEEEEEETGGGGTT------CCCCHHHHHHHHH
T ss_pred CeEEEEeCHHHHhccCcccchHHHHHHHHHhhc
Confidence 45899999999863 334555555554
No 184
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=47.12 E-value=22 Score=27.29 Aligned_cols=36 Identities=22% Similarity=0.168 Sum_probs=24.0
Q ss_pred eEEEechhhHhhc------cchHHHHHHHHHhCCCCceEEEEe
Q 029993 78 VILVLDEADRLLD------MGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 78 ~~lVvDEaD~l~~------~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
-.+|+||+|.+.+ ..+...+..+.... ....+++.+
T Consensus 130 ~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~il~g 171 (350)
T 2qen_A 130 FIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PNLKIILTG 171 (350)
T ss_dssp EEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TTEEEEEEE
T ss_pred EEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-CCeEEEEEC
Confidence 4789999999875 24566676766665 345555543
No 185
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=46.82 E-value=81 Score=23.20 Aligned_cols=65 Identities=20% Similarity=0.241 Sum_probs=38.3
Q ss_pred EEEeccHH-HHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 3 MIISPTRE-LSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 3 lIl~Ptre-La~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+++.++.+ ++....+.+.+..+.- +-.+..+.||+....-...+. ..... ..++++++.++-
T Consensus 3 ~~~~~~~~~l~~~aA~~l~~~i~~~-~~~~i~lsgG~T~~~~~~~L~---------------~~~~~-~~~~~~~v~v~~ 65 (242)
T 2bkx_A 3 VMECQTYEELSQIAARITADTIKEK-PDAVLGLATGGTPEGTYRQLI---------------RLHQT-ENLSFQNITTVN 65 (242)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSTTHHHHHHHH---------------HHHHH-SCCCCTTCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHC-CCeEEEECCCCCHHHHHHHHH---------------HHhhc-cCCChhheEEEe
Confidence 45666654 7777777777665532 223445566655433333321 11113 567899999999
Q ss_pred ech
Q 029993 82 LDE 84 (184)
Q Consensus 82 vDE 84 (184)
+||
T Consensus 66 lde 68 (242)
T 2bkx_A 66 LDE 68 (242)
T ss_dssp SEE
T ss_pred Ccc
Confidence 999
No 186
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=46.28 E-value=42 Score=26.77 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhhcCCC--ceEEEEECCc---chHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEech
Q 029993 12 SAQIYHVAQPFISTLPD--VKSMLLVGGV---EVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDE 84 (184)
Q Consensus 12 a~Qi~~~~~~l~~~~~~--~~~~~~~~~~---~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDE 84 (184)
-....+-+++..+.+ + +.+..+.... ...+..+.+.+.++|+||++...+.+.+.. -.-.+.+++++++|.
T Consensus 43 ~~~~~~G~~~~~~~~-G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~-vA~~~Pdv~fv~id~ 118 (356)
T 3s99_A 43 TYQHDQARKELVEAL-GDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVK-VAKKFPDVKFEHATG 118 (356)
T ss_dssp HHHHHHHHHHHHHHH-TTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHH-HHTTCTTSEEEEESC
T ss_pred HHHHHHHHHHHHHHh-CCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH-HHHHCCCCEEEEEec
Confidence 344455555555444 3 5655544432 233445566678999999998776666543 111234567777765
No 187
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=46.00 E-value=83 Score=23.02 Aligned_cols=60 Identities=25% Similarity=0.316 Sum_probs=37.9
Q ss_pred EEEeccHH-HHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 3 MIISPTRE-LSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 3 lIl~Ptre-La~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
+++.++.+ ++....+.+.+..+.- +- +..+.||.. |..+.+.+.. ..++++++.++=
T Consensus 4 ~~~~~~~~~l~~~aA~~l~~~i~~~-~~-~i~ls~G~T-------------------~~~~~~~L~~-~~~~~~~v~v~~ 61 (234)
T 2ri0_A 4 TIKVKNKTEGSKVAFRMLEEEITFG-AK-TLGLATGST-------------------PLELYKEIRE-SHLDFSDMVSIN 61 (234)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTT-CC-EEEECCSST-------------------THHHHHHHHT-SCCCCTTCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHhC-CC-EEEEcCCCC-------------------HHHHHHHHHh-cCCChhheEEEe
Confidence 45666654 7777777777766532 23 555555554 4444444444 557889999999
Q ss_pred ech
Q 029993 82 LDE 84 (184)
Q Consensus 82 vDE 84 (184)
+||
T Consensus 62 ldE 64 (234)
T 2ri0_A 62 LDE 64 (234)
T ss_dssp SEE
T ss_pred Cee
Confidence 998
No 188
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=45.94 E-value=21 Score=27.90 Aligned_cols=28 Identities=32% Similarity=0.205 Sum_probs=19.2
Q ss_pred ceEEEechhhHhhccc-hHHHHHHHHHhC
Q 029993 77 LVILVLDEADRLLDMG-FQKQISYIISRL 104 (184)
Q Consensus 77 l~~lVvDEaD~l~~~~-~~~~l~~i~~~l 104 (184)
-..+++||+|.+.... ....+..+++..
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred eEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 4589999999987542 345566666544
No 189
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=44.78 E-value=11 Score=27.22 Aligned_cols=64 Identities=14% Similarity=0.054 Sum_probs=37.7
Q ss_pred CCCceEEEechhhHh--hccchHHHHHHHHHhCCCCceEEEEeeeCchH-HHHHHHHhCC--CCeEEEEccC
Q 029993 74 FRNLVILVLDEADRL--LDMGFQKQISYIISRLPKLRRTGLFSATQTEA-VEELSKAGLR--NPVRIEVRAE 140 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l--~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~-v~~~~~~~~~--~~~~i~~~~~ 140 (184)
..+-.++++||++.| .+..|.+.+.++++.- .-+++-++|.+.+ -..|++.... +-..+.+..+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~ 171 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKE 171 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSS
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChH
Confidence 456679999999888 4455777777777743 2244445665321 1234444433 4456665544
No 190
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=43.99 E-value=31 Score=26.77 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=21.5
Q ss_pred ceEEEechhhHhhcc---chHHHHHHHHHhCCCCceEEEEeee
Q 029993 77 LVILVLDEADRLLDM---GFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 77 l~~lVvDEaD~l~~~---~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
-..+++||+|.+.+. .....+...+..++...-.++++++
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 458999999999853 3444444444443333333333333
No 191
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=42.90 E-value=41 Score=26.15 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=42.7
Q ss_pred CCCceEEEechhhH-hhccchHHHHHHHHHhCCCCceEEEEeeeCchH--HHHHHHHhCCCCeEEEEccC
Q 029993 74 FRNLVILVLDEADR-LLDMGFQKQISYIISRLPKLRRTGLFSATQTEA--VEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 74 ~~~l~~lVvDEaD~-l~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~--v~~~~~~~~~~~~~i~~~~~ 140 (184)
+.+-+.+|+||+|. +-. +..+.+...++..|..+-+++.+.++.+. -..+.+........+....-
T Consensus 74 f~~~kvvii~~~~~kl~~-~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l 142 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNA-AINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTP 142 (343)
T ss_dssp CCSCEEEEEECCSSCCCT-THHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCC
T ss_pred ccCCeEEEEECCCCCCCh-HHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCC
Confidence 56778999999998 543 34566667777766666777665555431 23455665666677766544
No 192
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=42.43 E-value=47 Score=30.90 Aligned_cols=74 Identities=9% Similarity=-0.051 Sum_probs=45.8
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCC----------------------------------ceEEEEECCcchHHHHH-
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPD----------------------------------VKSMLLVGGVEVKADVK- 45 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~----------------------------------~~~~~~~~~~~~~~~~~- 45 (184)
.+||+++|++-|.++...+..++-..+. ..+..++|+.....+..
T Consensus 443 ~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v 522 (1108)
T 3l9o_A 443 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 522 (1108)
T ss_dssp CEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHH
T ss_pred CEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHH
Confidence 4799999999999998887654221100 11677888876543322
Q ss_pred --HHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 46 --KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 46 --~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
...++..+|||||.- -. .++|+..+.++|
T Consensus 523 ~~~F~~G~ikVLVAT~v------la-~GIDiP~v~~VI 553 (1108)
T 3l9o_A 523 EILFQEGFLKVLFATET------FS-IGLNMPAKTVVF 553 (1108)
T ss_dssp HHHHHHTCCCEEEEESC------CC-SCCCC--CEEEE
T ss_pred HHHHhCCCCeEEEECcH------Hh-cCCCCCCceEEE
Confidence 233567899999962 11 466777777654
No 193
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=41.92 E-value=34 Score=30.93 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=36.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHH--cCCcEeeech
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE--EGANLLIGTP 59 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~IlV~TP 59 (184)
+||.+.|++-+..+...+.+. ++.+..+.|+....+. ..+.. ....|+|+|.
T Consensus 435 vLVft~s~~~se~Ls~~L~~~-----gi~~~vLhg~~~~rEr-~ii~~ag~~g~VlIATd 488 (844)
T 1tf5_A 435 VLVGTVAVETSELISKLLKNK-----GIPHQVLNAKNHEREA-QIIEEAGQKGAVTIATN 488 (844)
T ss_dssp EEEEESCHHHHHHHHHHHHTT-----TCCCEEECSSCHHHHH-HHHTTTTSTTCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCEEEeeCCccHHHH-HHHHHcCCCCeEEEeCC
Confidence 799999999999998877663 5777888887543322 22211 2358999996
No 194
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=41.78 E-value=19 Score=28.25 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=22.3
Q ss_pred EEEechhhHhhccchHHH-HHHHHHhCCCCceEEEEeee
Q 029993 79 ILVLDEADRLLDMGFQKQ-ISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 79 ~lVvDEaD~l~~~~~~~~-l~~i~~~l~~~~q~i~~SAT 116 (184)
.+++||+|.+......+. +..+++.. ....+++.|..
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 999999999876432344 55555544 33445554443
No 195
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=41.16 E-value=8.2 Score=30.40 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=15.9
Q ss_pred ceEEEechhhHhhccchHHHHHHHHH
Q 029993 77 LVILVLDEADRLLDMGFQKQISYIIS 102 (184)
Q Consensus 77 l~~lVvDEaD~l~~~~~~~~l~~i~~ 102 (184)
-..+++||+|.+ +......+..++.
T Consensus 126 ~~vlilDE~~~l-~~~~~~~L~~~~~ 150 (389)
T 1fnn_A 126 YMFLVLDDAFNL-APDILSTFIRLGQ 150 (389)
T ss_dssp CEEEEEETGGGS-CHHHHHHHHHHTT
T ss_pred eEEEEEECcccc-chHHHHHHHHHHH
Confidence 458999999998 3334444444443
No 196
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=40.98 E-value=24 Score=23.77 Aligned_cols=36 Identities=19% Similarity=0.053 Sum_probs=22.9
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
..+++||+|.+-.. ....+...+...+.+.++|+.|
T Consensus 78 g~l~ldei~~l~~~-~q~~Ll~~l~~~~~~~~~I~~t 113 (145)
T 3n70_A 78 GTLVLSHPEHLTRE-QQYHLVQLQSQEHRPFRLIGIG 113 (145)
T ss_dssp SCEEEECGGGSCHH-HHHHHHHHHHSSSCSSCEEEEE
T ss_pred cEEEEcChHHCCHH-HHHHHHHHHhhcCCCEEEEEEC
Confidence 47899999987433 4455556665555556655543
No 197
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=40.81 E-value=1.1e+02 Score=22.68 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=17.6
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHh
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISR 103 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~ 103 (184)
.+.+.+++||||.-.-......++.++.-
T Consensus 102 ~~~kIiiLDEad~~~~~~~d~~lrn~ldG 130 (212)
T 1tue_A 102 TDTKVAMLDDATTTCWTYFDTYMRNALDG 130 (212)
T ss_dssp TTCSSEEEEEECHHHHHHHHHHCHHHHHT
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHHhCC
Confidence 46789999999854322223445555544
No 198
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=40.80 E-value=38 Score=27.76 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=24.9
Q ss_pred CCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 74 FRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 74 ~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
+...+++|+||++.+ + ...+..+++.++...++++++
T Consensus 126 ~~~~~~iiiDE~~~~-~---~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 126 LAKCRVLICDEVSMY-D---RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp CSSCSEEEESCGGGC-C---HHHHHHHHHHSCTTCEEEEEE
T ss_pred ccCCCEEEEECchhC-C---HHHHHHHHHhccCCCEEEEEC
Confidence 456789999999854 2 345556666666666666655
No 199
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=40.52 E-value=25 Score=27.85 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=11.6
Q ss_pred ceEEEechhhHhhc
Q 029993 77 LVILVLDEADRLLD 90 (184)
Q Consensus 77 l~~lVvDEaD~l~~ 90 (184)
-..+|+||+|.+..
T Consensus 139 ~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 139 YLLVILDEFQSMLS 152 (412)
T ss_dssp EEEEEEESTHHHHS
T ss_pred eEEEEEeCHHHHhh
Confidence 34889999999875
No 200
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=39.44 E-value=37 Score=28.40 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=26.9
Q ss_pred eEEEechhhHhhcc----------chHHHHHHHHHhCCCCceEEEEeeeCch
Q 029993 78 VILVLDEADRLLDM----------GFQKQISYIISRLPKLRRTGLFSATQTE 119 (184)
Q Consensus 78 ~~lVvDEaD~l~~~----------~~~~~l~~i~~~l~~~~q~i~~SAT~~~ 119 (184)
..+++||+|.+... .....+...+..+.....+++++||=.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 58999999998752 1234455556665555666666676433
No 201
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=39.09 E-value=35 Score=25.82 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.7
Q ss_pred CCccCCCceEEEechhh
Q 029993 70 DVLDFRNLVILVLDEAD 86 (184)
Q Consensus 70 ~~~~~~~l~~lVvDEaD 86 (184)
..++++++.++-+||-=
T Consensus 63 ~~idw~~v~~f~~DEr~ 79 (251)
T 3tx2_A 63 SGLDWTNVHVFWGDDRY 79 (251)
T ss_dssp TTSCGGGEEEEESEEES
T ss_pred cCCCCceeEEEeeeecc
Confidence 46899999999999963
No 202
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=38.48 E-value=19 Score=28.03 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=32.8
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
..-+++++||...-++......+..+++.+.+..|+++.|-.
T Consensus 240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~ 281 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHN 281 (322)
T ss_dssp SCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 445799999999888877788888888877666787776655
No 203
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=37.94 E-value=7 Score=29.87 Aligned_cols=39 Identities=28% Similarity=0.203 Sum_probs=22.4
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEe
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
.+-+.+++||+|.+... ....+..+++..+....+++.+
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 139 (319)
T 2chq_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (319)
T ss_dssp CCCEEEEEETGGGSCHH-HHHTTGGGTSSSSSSEEEEEEE
T ss_pred CCceEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45789999999987532 2233333344334445555544
No 204
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=37.83 E-value=47 Score=25.27 Aligned_cols=92 Identities=16% Similarity=0.112 Sum_probs=48.8
Q ss_pred EEEeccHH-HHHHHHHHHHHhhhcC---CCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCce
Q 029993 3 MIISPTRE-LSAQIYHVAQPFISTL---PDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLV 78 (184)
Q Consensus 3 lIl~Ptre-La~Qi~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~ 78 (184)
+++.++.+ ++....+.+.+..... .+--+..+.||+....-...+.+ . .. +.++++++.
T Consensus 8 ~~~~~~~~~l~~~aA~~i~~~i~~a~~~~~~~~l~LsgGstp~~ly~~L~~---------------~-~~-~~i~w~~v~ 70 (267)
T 3css_A 8 VKICENLSQMSFAAREVILAAIDARVDKSVPVVLALSGGSTPKRLYEELHE---------------K-DL-ALLQQHAVQ 70 (267)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTCSSTTSCEEEEECCSSTTHHHHHHHHH---------------H-SH-HHHHTTCEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHHHH---------------h-cc-cCCChhHeE
Confidence 56677765 7777777666554431 12334555666654444333321 1 11 357789999
Q ss_pred EEEechhhHhh-c--cchHHHHH-HHHHhCCCCceEEEE
Q 029993 79 ILVLDEADRLL-D--MGFQKQIS-YIISRLPKLRRTGLF 113 (184)
Q Consensus 79 ~lVvDEaD~l~-~--~~~~~~l~-~i~~~l~~~~q~i~~ 113 (184)
++-+||-= +- + ..+...++ .+++.++ ..|+...
T Consensus 71 ~f~~DEr~-vp~~~~~Sn~~~~~~~ll~~~~-~~~i~~~ 107 (267)
T 3css_A 71 FILGDERL-LSEDDEQSNFSMATKALLRDVP-SSDVISI 107 (267)
T ss_dssp EEESEEES-SCTTSTTSHHHHHHHHTGGGSC-GGGBCCC
T ss_pred EEeeeeec-cCCCCHHHHHHHHHHHHhccCC-HHHEEeC
Confidence 99999863 21 1 12333333 4556665 4454433
No 205
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=37.06 E-value=38 Score=22.67 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=22.5
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhC-CCCceEEEEeeeC
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRL-PKLRRTGLFSATQ 117 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l-~~~~q~i~~SAT~ 117 (184)
..+++||+|.+-.. ....+.+++... +.+.++|+.|..-
T Consensus 77 ~~l~lDei~~l~~~-~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 77 GVLYVGDIAQYSRN-IQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp SEEEEEECTTCCHH-HHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CeEEEeChHHCCHH-HHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 57999999987443 333444444433 3445666655443
No 206
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=36.65 E-value=1.1e+02 Score=23.12 Aligned_cols=75 Identities=8% Similarity=0.047 Sum_probs=48.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHH--HHc--CCcE-eeechHHHHHHHHhcCCccCC
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI--EEE--GANL-LIGTPGRLYDIMERMDVLDFR 75 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~--~~~I-lV~TP~~l~~~~~~~~~~~~~ 75 (184)
.+||++.+++.+..+...+.+-. ++.+..+.|+.+..+....+ ++. .+.| +++|-. ....+|+.
T Consensus 114 kvlIFs~~~~~~~~l~~~L~~~~----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~-------~g~Glnl~ 182 (271)
T 1z5z_A 114 KIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA-------GGFGINLT 182 (271)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHH----CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT-------TCCCCCCT
T ss_pred eEEEEeccHHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh-------hcCCcCcc
Confidence 37899999999998888887632 45566778876644333222 223 3554 455542 12578888
Q ss_pred CceEEEechhh
Q 029993 76 NLVILVLDEAD 86 (184)
Q Consensus 76 ~l~~lVvDEaD 86 (184)
.+..+|+=+.+
T Consensus 183 ~a~~VI~~d~~ 193 (271)
T 1z5z_A 183 SANRVIHFDRW 193 (271)
T ss_dssp TCSEEEECSCC
T ss_pred cCCEEEEECCC
Confidence 88888865554
No 207
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=36.34 E-value=37 Score=25.62 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=14.3
Q ss_pred CCccCCCceEEEechhh
Q 029993 70 DVLDFRNLVILVLDEAD 86 (184)
Q Consensus 70 ~~~~~~~l~~lVvDEaD 86 (184)
..++++++.++-+||-=
T Consensus 63 ~~idw~~v~~f~~DEr~ 79 (248)
T 3oc6_A 63 GEIDWSKVHIYWGDERF 79 (248)
T ss_dssp GGSCGGGEEEEESEEEC
T ss_pred cCCCcceEEEEEeeecc
Confidence 35889999999999963
No 208
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=36.26 E-value=25 Score=28.58 Aligned_cols=41 Identities=27% Similarity=0.229 Sum_probs=32.7
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCC-CceEEEEee
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPK-LRRTGLFSA 115 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~-~~q~i~~SA 115 (184)
..-.++++||.+.-++......+..+++.+.. ..|+++.|.
T Consensus 354 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th 395 (430)
T 1w1w_A 354 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISL 395 (430)
T ss_dssp SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECS
T ss_pred CCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 45679999999999998888888888877653 568887764
No 209
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=36.09 E-value=48 Score=25.32 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=24.3
Q ss_pred eEEEechhhHhhc---cchHHHHHHHHHhCCCCceEEEEe
Q 029993 78 VILVLDEADRLLD---MGFQKQISYIISRLPKLRRTGLFS 114 (184)
Q Consensus 78 ~~lVvDEaD~l~~---~~~~~~l~~i~~~l~~~~q~i~~S 114 (184)
-.+|+||+|.+.. ..+...+..+....+ ...+++.+
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g 177 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSG 177 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEE
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEc
Confidence 3789999999874 356777777776653 34555543
No 210
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=35.77 E-value=45 Score=25.54 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=11.2
Q ss_pred eEEEechhhHhhc
Q 029993 78 VILVLDEADRLLD 90 (184)
Q Consensus 78 ~~lVvDEaD~l~~ 90 (184)
..+++||+|.+..
T Consensus 110 ~il~iDEid~l~~ 122 (301)
T 3cf0_A 110 CVLFFDELDSIAK 122 (301)
T ss_dssp EEEEECSTTHHHH
T ss_pred eEEEEEChHHHhh
Confidence 6899999999864
No 211
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=35.54 E-value=41 Score=26.03 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=11.8
Q ss_pred ceEEEechhhHhhc
Q 029993 77 LVILVLDEADRLLD 90 (184)
Q Consensus 77 l~~lVvDEaD~l~~ 90 (184)
-..+++||+|.+..
T Consensus 111 ~~vl~iDEid~l~~ 124 (322)
T 3eie_A 111 PSIIFIDQVDALTG 124 (322)
T ss_dssp SEEEEEECGGGGSC
T ss_pred CeEEEechhhhhhc
Confidence 36899999999865
No 212
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=35.05 E-value=32 Score=26.31 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=25.7
Q ss_pred CCccC-CCceEEEechhhHhhc----cchHHHHH-HHHHhCCCCceEEEEeee
Q 029993 70 DVLDF-RNLVILVLDEADRLLD----MGFQKQIS-YIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 70 ~~~~~-~~l~~lVvDEaD~l~~----~~~~~~l~-~i~~~l~~~~q~i~~SAT 116 (184)
..+++ +++.++-+||-= +. ..+...++ .++..++. .|+..+-.+
T Consensus 61 ~~idw~~~v~~f~~DEr~--vp~~~~~Sn~~~~~~~ll~~i~~-~~i~~~~~~ 110 (266)
T 3eb9_A 61 NLLREKRALRFFMGDERM--VPADSTDSNYNMAREVLLHDIPD-DLVFPFDTS 110 (266)
T ss_dssp HHHTTSCCEEEEESEEES--SCTTSTTCHHHHHHHHTGGGSCG-GGEECCCCT
T ss_pred cCCChHHcEEEEeeeeec--cCCCChHHHHHHHHHHhhcCCCH-HHEEeCCCc
Confidence 35789 999999999953 22 12444443 34454433 455555444
No 213
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=34.81 E-value=1.1e+02 Score=21.21 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=10.7
Q ss_pred CCceEEEechhhHh
Q 029993 75 RNLVILVLDEADRL 88 (184)
Q Consensus 75 ~~l~~lVvDEaD~l 88 (184)
.+..++++||++..
T Consensus 114 ~~~~~lilDei~~~ 127 (202)
T 2w58_A 114 KKVPVLMLDDLGAE 127 (202)
T ss_dssp HHSSEEEEEEECCC
T ss_pred cCCCEEEEcCCCCC
Confidence 34569999999764
No 214
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=34.74 E-value=76 Score=29.17 Aligned_cols=74 Identities=11% Similarity=0.016 Sum_probs=46.1
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhc------------------CC----------------CceEEEEECCcchHHHH--
Q 029993 1 MGMIISPTRELSAQIYHVAQPFIST------------------LP----------------DVKSMLLVGGVEVKADV-- 44 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~------------------~~----------------~~~~~~~~~~~~~~~~~-- 44 (184)
.+||+++|+.-|..+...+....-. ++ ...+...+||.....+.
T Consensus 345 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~v 424 (1010)
T 2xgj_A 345 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 424 (1010)
T ss_dssp SEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHH
Confidence 3799999999999888777652100 00 01267778877644332
Q ss_pred -HHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEE
Q 029993 45 -KKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILV 81 (184)
Q Consensus 45 -~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lV 81 (184)
....++..+|||||.. +. ..+|+..+.++|
T Consensus 425 e~~F~~G~ikVLVAT~~-----la--~GIDiP~~~vVI 455 (1010)
T 2xgj_A 425 EILFQEGFLKVLFATET-----FS--IGLNMPAKTVVF 455 (1010)
T ss_dssp HHHHHTTCCSEEEEEGG-----GG--GSTTCCBSEEEE
T ss_pred HHHHhcCCCcEEEEehH-----hh--ccCCCCCceEEE
Confidence 2223467899999972 11 467777766643
No 215
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=34.41 E-value=47 Score=24.30 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=7.7
Q ss_pred ceEEEechhhHhhc
Q 029993 77 LVILVLDEADRLLD 90 (184)
Q Consensus 77 l~~lVvDEaD~l~~ 90 (184)
-..+++||+|.+..
T Consensus 99 ~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 99 PCIVYIDEIDAVGK 112 (262)
T ss_dssp SEEEEEECC-----
T ss_pred CeEEEEeCcchhhc
Confidence 35899999999853
No 216
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=33.92 E-value=1.3e+02 Score=23.12 Aligned_cols=97 Identities=15% Similarity=0.224 Sum_probs=47.5
Q ss_pred EEEeccH-HHHHHHHHHHHHhhhc-CC---CceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCc
Q 029993 3 MIISPTR-ELSAQIYHVAQPFIST-LP---DVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 3 lIl~Ptr-eLa~Qi~~~~~~l~~~-~~---~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l 77 (184)
+++.++. +++....+.+.+.... .+ +.-+..+.||+....-...+ .+..+. +.++++++
T Consensus 24 i~i~~~~~~la~~aA~~i~~~i~~a~~~~~~~~~l~LsgGsTP~~~y~~L---------------~~~~~~-~~idw~~v 87 (289)
T 3hn6_A 24 LIIRPTYEDISKWAANHVAQKINEFSPTKENPFILGLPTGSSPIGMYKNL---------------IELNKN-KKISFQNV 87 (289)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHCCBTTBCEEEEECCSSTTHHHHHHH---------------HHHHHT-TSCCCTTE
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHhhccCCcEEEEECCCccHHHHHHHH---------------HHhHhh-cCCCchhe
Confidence 4556653 4455555555444332 11 12345556665543333222 122233 67899999
Q ss_pred eEEEechhhHhh-c--cchHHHHHH-HHHhCCC-CceEEEEee
Q 029993 78 VILVLDEADRLL-D--MGFQKQISY-IISRLPK-LRRTGLFSA 115 (184)
Q Consensus 78 ~~lVvDEaD~l~-~--~~~~~~l~~-i~~~l~~-~~q~i~~SA 115 (184)
.++-+||-=-+- + .++...+++ +++..+- ..|+-....
T Consensus 88 ~~f~~DEr~gvp~~~~~Sn~~~~~~~Ll~~v~i~~~~i~~~~~ 130 (289)
T 3hn6_A 88 ITFNMDEYIGIEENHPESYHSFMWNNFFSHIDIKKENINILNG 130 (289)
T ss_dssp EEEESEEESSCCTTSTTSHHHHHHHHTGGGSCCCGGGEECCCT
T ss_pred EEEeCcceecCCCCcHHHHHHHHHHHhhccCCCCHHHeecCCC
Confidence 999999931011 1 234444443 4555542 235554443
No 217
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=33.90 E-value=1.1e+02 Score=22.52 Aligned_cols=56 Identities=7% Similarity=0.128 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHh
Q 029993 8 TRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER 68 (184)
Q Consensus 8 treLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~ 68 (184)
--++..++++.+++. +.+...+.-......+.......|||++=..|.-+.+++++
T Consensus 141 G~~~v~~i~~~~~~~-----~~~t~ilaAS~R~~~~v~~~a~~G~d~~Tip~~vl~~l~~h 196 (212)
T 3r8r_A 141 GLDLISEVKQIFDIH-----GLDTQIIAASIRHPQHVTEAALRGAHIGTMPLKVIHALTKH 196 (212)
T ss_dssp HHHHHHHHHHHHHHH-----TCCCEEEEBSCCSHHHHHHHHHTTCSEEEECHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHc-----CCCCEEEEecCCCHHHHHHHHHcCCCEEEcCHHHHHHHHcC
Confidence 346778888877776 33444444445555565554457999998888777777654
No 218
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=33.51 E-value=49 Score=24.92 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=12.3
Q ss_pred ceEEEechhhHhhcc
Q 029993 77 LVILVLDEADRLLDM 91 (184)
Q Consensus 77 l~~lVvDEaD~l~~~ 91 (184)
-..+++||+|.+...
T Consensus 114 ~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 114 PSIIFIDEVDSLLSE 128 (297)
T ss_dssp SEEEEEETGGGTSBC
T ss_pred CcEEEeccHHHhccc
Confidence 468999999998653
No 219
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=32.75 E-value=39 Score=25.88 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=24.9
Q ss_pred CCccCCCceEEEechhhHhh-c--cchHHHHHH-HHHhCC-CCceEEEE
Q 029993 70 DVLDFRNLVILVLDEADRLL-D--MGFQKQISY-IISRLP-KLRRTGLF 113 (184)
Q Consensus 70 ~~~~~~~l~~lVvDEaD~l~-~--~~~~~~l~~-i~~~l~-~~~q~i~~ 113 (184)
..++++++.++-+||-= +- + .++...+++ +++.++ +..|+...
T Consensus 79 ~~idw~~v~~f~~DEr~-vp~~~~~Sn~~~~~~~Ll~~v~i~~~~i~~~ 126 (268)
T 3ico_A 79 QQIEWSKVHLFWGDERY-VPEDDDERNLKQARRALLNHVDIPSNQVHPM 126 (268)
T ss_dssp GGSCGGGEEEEESEEEC-SCTTCTTCHHHHHHHHTGGGSCCCGGGBCCC
T ss_pred hhhhheeeEEeeccccc-CCCCcchhHHHHHHHHHHhccCCcccccccc
Confidence 46889999999999963 21 1 134444443 455553 22344444
No 220
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=32.00 E-value=2.3e+02 Score=23.94 Aligned_cols=98 Identities=11% Similarity=0.221 Sum_probs=52.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCC-ceEEEE-ECCcchHHHHHHHHHcCCcEeee--chHHHHHHHHhcCCccCCCc
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPD-VKSMLL-VGGVEVKADVKKIEEEGANLLIG--TPGRLYDIMERMDVLDFRNL 77 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~IlV~--TP~~l~~~~~~~~~~~~~~l 77 (184)
+++++||++.|..+...++.+....|. ++.... .+..... ..+|..|.+. .|+.+ .. . +.
T Consensus 211 i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~~~~~~~~~~i~------~~nGs~i~~~s~~~~~l----rG-~-----~~ 274 (592)
T 3cpe_A 211 VGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIE------LDNGSSIGAYASSPDAV----RG-N-----SF 274 (592)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHTTSCTTTSCCEEEECSSEEE------ETTSCEEEEEECCHHHH----HH-S-----CC
T ss_pred EEEEECCHHHHHHHHHHHHHHHHhChHhhccccccCCccEEE------ecCCCEEEEEeCCCCCc----cC-C-----Cc
Confidence 588999999999999989888776653 221100 1111110 1234444433 34433 22 2 24
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCC--CCceEEEEeeeCc
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLP--KLRRTGLFSATQT 118 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~--~~~q~i~~SAT~~ 118 (184)
.++++||++..-+. .+.+..+...+. .+.+++++ .|..
T Consensus 275 ~~~iiDE~~~~~~~--~~l~~~~~~~l~~~~~~~ii~i-sTP~ 314 (592)
T 3cpe_A 275 AMIYIEDCAFIPNF--HDSWLAIQPVISSGRRSKIIIT-TTPN 314 (592)
T ss_dssp SEEEEETGGGCTTH--HHHHHHHHHHHSSSSCCEEEEE-ECCC
T ss_pred ceEEEehhccCCch--hHHHHHHHHHhccCCCceEEEE-eCCC
Confidence 58999999986432 233344444443 23555554 3543
No 221
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=31.45 E-value=51 Score=27.63 Aligned_cols=36 Identities=25% Similarity=0.186 Sum_probs=27.2
Q ss_pred CCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEE
Q 029993 75 RNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLF 113 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~ 113 (184)
..++++|+|||++| +..+.....++++.++ -|.|+.
T Consensus 413 ~~~rlvvlDEA~km-D~~~~~~~~~l~~~lg--lQliia 448 (483)
T 3euj_A 413 LPCRLLFLDQAARL-DAMSINTLFELCERLD--MQLLIA 448 (483)
T ss_dssp CCCCEEEESSGGGS-CHHHHHHHHHHHHHTT--CEEEEE
T ss_pred CceeEEEEeccccC-CHHHHHHHHHHHHHcC--CEEEEE
Confidence 58999999999765 4446666777788774 788863
No 222
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=30.45 E-value=26 Score=26.20 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred EEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeee
Q 029993 3 MIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIG 57 (184)
Q Consensus 3 lIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~ 57 (184)
++++|..+|.....+.+.++.... .+.+....-......-...+..+++||+|+
T Consensus 16 i~i~~~~~L~~~~~~i~~e~~~~~-~I~vi~~~le~av~~a~~~~~~~~~dVIIS 69 (225)
T 2pju_A 16 IWTVSVTRLFELFRDISLEFDHLA-NITPIQLGFEKAVTYIRKKLANERCDAIIA 69 (225)
T ss_dssp EEEECCHHHHHHHHHHHTTTTTTC-EEEEECCCHHHHHHHHHHHTTTSCCSEEEE
T ss_pred EEEEchHHHHHHHHHHHHhhCCCc-eEEEecCcHHHHHHHHHHHHhcCCCeEEEe
No 223
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=29.83 E-value=1.5e+02 Score=22.78 Aligned_cols=71 Identities=14% Similarity=0.260 Sum_probs=34.5
Q ss_pred HHHHhhhcCCC--ceEEEEECCcchHH--HH----HHHH-HcCCcEeeechHHHHHHHHhc---CC----c-cCCCceEE
Q 029993 18 VAQPFISTLPD--VKSMLLVGGVEVKA--DV----KKIE-EEGANLLIGTPGRLYDIMERM---DV----L-DFRNLVIL 80 (184)
Q Consensus 18 ~~~~l~~~~~~--~~~~~~~~~~~~~~--~~----~~l~-~~~~~IlV~TP~~l~~~~~~~---~~----~-~~~~l~~l 80 (184)
.+..+....++ -....++|+.-.+. -. ..+. ..+..++..+...+..-+... +. + .+.+..+|
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lL 218 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVL 218 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEE
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEE
Confidence 44445444322 35677787543221 11 1222 345666644444444444320 00 1 13567799
Q ss_pred EechhhHh
Q 029993 81 VLDEADRL 88 (184)
Q Consensus 81 VvDEaD~l 88 (184)
|+||++..
T Consensus 219 iiDdig~~ 226 (308)
T 2qgz_A 219 ILDDIGAE 226 (308)
T ss_dssp EEETCCC-
T ss_pred EEcCCCCC
Confidence 99999654
No 224
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=28.76 E-value=66 Score=25.34 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=12.1
Q ss_pred CceEEEechhhHhhc
Q 029993 76 NLVILVLDEADRLLD 90 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~ 90 (184)
.-..+++||+|.+..
T Consensus 143 ~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 143 KPSIIFIDQVDALTG 157 (355)
T ss_dssp SSEEEEEECGGGGTC
T ss_pred CCeEEEEechHhhcc
Confidence 346899999999864
No 225
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=28.58 E-value=1.7e+02 Score=21.50 Aligned_cols=56 Identities=5% Similarity=-0.044 Sum_probs=31.3
Q ss_pred EeeechHHHHHHHHhcCCccCCCceEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEee
Q 029993 54 LLIGTPGRLYDIMERMDVLDFRNLVILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSA 115 (184)
Q Consensus 54 IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SA 115 (184)
+-+.++..+.+.+.. ...-.+..++++||+..+ .....+.+..+.. ...++++++-
T Consensus 69 ~~~~~~~~i~~~i~~--~~~~~~~dvViIDEaQ~l-~~~~ve~l~~L~~---~gi~Vil~Gl 124 (223)
T 2b8t_A 69 VEVESAPEILNYIMS--NSFNDETKVIGIDEVQFF-DDRICEVANILAE---NGFVVIISGL 124 (223)
T ss_dssp EEESSTHHHHHHHHS--TTSCTTCCEEEECSGGGS-CTHHHHHHHHHHH---TTCEEEEECC
T ss_pred cccCCHHHHHHHHHH--HhhCCCCCEEEEecCccC-cHHHHHHHHHHHh---CCCeEEEEec
Confidence 345555566666654 122234689999999864 3233444444443 2466666654
No 226
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=28.36 E-value=2.3e+02 Score=22.76 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=22.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPD 28 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~ 28 (184)
+++++||++-|..+.+.+..+....|.
T Consensus 211 v~~vA~t~~qA~~vf~~i~~mi~~~P~ 237 (385)
T 2o0j_A 211 VGILAHKGSMSAEVLDRTKQAIELLPD 237 (385)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHSCT
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhChH
Confidence 578999999999999888888776653
No 227
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase, malaria, carbohydrate metabolism, glucose metabolism, NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium vivax}
Probab=28.21 E-value=1.2e+02 Score=23.77 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=29.7
Q ss_pred CCccCCCceEEEechhhHhhc--cchHHHHHHHHHhCCCC--ceEEEEeee
Q 029993 70 DVLDFRNLVILVLDEADRLLD--MGFQKQISYIISRLPKL--RRTGLFSAT 116 (184)
Q Consensus 70 ~~~~~~~l~~lVvDEaD~l~~--~~~~~~l~~i~~~l~~~--~q~i~~SAT 116 (184)
+.++++++.++-+||-=--.+ ..+...++.++..++-. .|+.....+
T Consensus 85 ~~idw~~V~~f~~DEr~vp~d~~~Sn~~~~~~l~~~v~i~~~~~i~~~~g~ 135 (312)
T 3e15_A 85 IKIDTSKLIFFIIDERYKRDDHKFSNYNNIKFLFESLKINEKEQLYRPDTS 135 (312)
T ss_dssp SCCCGGGCEEEESEEECCTTCCTTCHHHHHHHHHHHTTCCHHHHEECCCTT
T ss_pred cCCCccceEEEEeeeecCCCCChHHHHHHHHHHHhcCCCCccccEEcCCCC
Confidence 578999999999999532111 12444556778887654 355555443
No 228
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.14 E-value=60 Score=27.07 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=26.1
Q ss_pred CceEEEechhhHhhcc--chHHHHHHHHHhCCCCceEEEEeeeCc
Q 029993 76 NLVILVLDEADRLLDM--GFQKQISYIISRLPKLRRTGLFSATQT 118 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~~--~~~~~l~~i~~~l~~~~q~i~~SAT~~ 118 (184)
.-..+++||+|.+... +....+..+++.. ...+++.+++..
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 4468999999998653 2345566666543 345666666643
No 229
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=27.61 E-value=57 Score=25.69 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=11.9
Q ss_pred ceEEEechhhHhhc
Q 029993 77 LVILVLDEADRLLD 90 (184)
Q Consensus 77 l~~lVvDEaD~l~~ 90 (184)
-..+++||+|.|..
T Consensus 177 ~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 177 PAVIFIDEIDSLLS 190 (357)
T ss_dssp SEEEEEETHHHHTB
T ss_pred CeEEEEeCchhhhc
Confidence 46899999999865
No 230
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=26.83 E-value=1.2e+02 Score=22.52 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHh
Q 029993 8 TRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER 68 (184)
Q Consensus 8 treLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~ 68 (184)
--+++.++++.+++. +.+...+........+.......|||++-..|.-+.+++++
T Consensus 143 G~~~v~~i~~~~~~~-----~~~T~IlaAS~Rn~~~v~~aa~~G~d~~Tip~~vl~~l~~h 198 (223)
T 3s1x_A 143 GMQIIDMIRTIFNNY-----IIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKH 198 (223)
T ss_dssp THHHHHHHHHHHHHT-----TCCSEEEEBSCCSHHHHHHHHHHTCSEEEECHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHc-----CCCCEEEEEeCCCHHHHHHHHHcCCCEEEeCHHHHHHHHcC
Confidence 456778888877775 33444444445555565553356999998899877777654
No 231
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=26.40 E-value=17 Score=30.47 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=31.0
Q ss_pred eEEEechhhHhhccchHHHHHHHHHhCCCCceEEEEeee
Q 029993 78 VILVLDEADRLLDMGFQKQISYIISRLPKLRRTGLFSAT 116 (184)
Q Consensus 78 ~~lVvDEaD~l~~~~~~~~l~~i~~~l~~~~q~i~~SAT 116 (184)
+++++||-+.=++......+..+++.+.+..|+++.|--
T Consensus 419 ~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~ 457 (517)
T 4ad8_A 419 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHL 457 (517)
T ss_dssp SEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCC
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 799999999988887788888888777666677766543
No 232
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=25.62 E-value=10 Score=20.74 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=9.2
Q ss_pred EechhhHhhccchHHHHHH
Q 029993 81 VLDEADRLLDMGFQKQISY 99 (184)
Q Consensus 81 VvDEaD~l~~~~~~~~l~~ 99 (184)
++||+|.+++.+-.+.++.
T Consensus 19 lLDeId~vLE~NAeeFV~~ 37 (44)
T 3m91_B 19 LLDEIDDVLEENAEDFVRA 37 (44)
T ss_dssp HHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 4677888777665555444
No 233
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=25.23 E-value=1.6e+02 Score=23.84 Aligned_cols=74 Identities=8% Similarity=0.054 Sum_probs=48.0
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHH--HHcC--Cc-EeeechHHHHHHHHhcCCccCCC
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKI--EEEG--AN-LLIGTPGRLYDIMERMDVLDFRN 76 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~--~~-IlV~TP~~l~~~~~~~~~~~~~~ 76 (184)
+||++.+++.+..+...+.... +..+..+.|+.+..+....+ ++.+ +. ++++|-. . . ..+|+..
T Consensus 344 ~lvF~~~~~~~~~l~~~l~~~~----~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~-~-----~-~Glnl~~ 412 (500)
T 1z63_A 344 IAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA-G-----G-FGINLTS 412 (500)
T ss_dssp EEEECSCHHHHHHHHHHHHHHH----TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCC-C-------CCCCCTT
T ss_pred EEEEEehHHHHHHHHHHHHHhh----CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccc-c-----c-CCCchhh
Confidence 6899999999999888887642 35567778887644433222 2333 44 4555541 1 1 5788999
Q ss_pred ceEEEechhh
Q 029993 77 LVILVLDEAD 86 (184)
Q Consensus 77 l~~lVvDEaD 86 (184)
+..+|+-+..
T Consensus 413 ~~~vi~~d~~ 422 (500)
T 1z63_A 413 ANRVIHFDRW 422 (500)
T ss_dssp CSEEEESSCC
T ss_pred CCEEEEeCCC
Confidence 9988875544
No 234
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=25.10 E-value=1.1e+02 Score=21.90 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=28.4
Q ss_pred CceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHh
Q 029993 28 DVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMER 68 (184)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~ 68 (184)
+++...+....+.......+.+.|++++||.. ...++-++
T Consensus 119 ~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~-~~~~~A~~ 158 (196)
T 2q5c_A 119 KIKEFLFSSEDEITTLISKVKTENIKIVVSGK-TVTDEAIK 158 (196)
T ss_dssp EEEEEEECSGGGHHHHHHHHHHTTCCEEEECH-HHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCeEEECCH-HHHHHHHH
Confidence 35555555666777788888889999999954 55565555
No 235
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=24.42 E-value=42 Score=24.32 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=30.1
Q ss_pred CCceEEEechhhHhhc-----cchHHHHHHHHHhCCCCceEEEEeeeCchHH
Q 029993 75 RNLVILVLDEADRLLD-----MGFQKQISYIISRLPKLRRTGLFSATQTEAV 121 (184)
Q Consensus 75 ~~l~~lVvDEaD~l~~-----~~~~~~l~~i~~~l~~~~q~i~~SAT~~~~v 121 (184)
.+.+.+++||.-.+++ ......+..+++.+.+.--.++++......+
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 4577999999998886 4455557777777644334566666555443
No 236
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=23.90 E-value=85 Score=24.88 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=10.7
Q ss_pred eEEEechhhHhhc
Q 029993 78 VILVLDEADRLLD 90 (184)
Q Consensus 78 ~~lVvDEaD~l~~ 90 (184)
.+|++||+|.|+.
T Consensus 209 ~il~iDEid~l~~ 221 (389)
T 3vfd_A 209 SIIFIDQVDSLLC 221 (389)
T ss_dssp EEEEEETGGGGC-
T ss_pred eEEEEECchhhcc
Confidence 5899999999853
No 237
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=23.88 E-value=1.2e+02 Score=27.49 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=36.5
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHH--cCCcEeeech
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE--EGANLLIGTP 59 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~IlV~TP 59 (184)
+||.+.|++-+..+...+.+. ++.+..+.|+.... +...+.. ....|+|+|.
T Consensus 444 vLVft~sie~se~Ls~~L~~~-----gi~~~vLnak~~~r-Ea~iia~agr~G~VtIATn 497 (853)
T 2fsf_A 444 VLVGTISIEKSELVSNELTKA-----GIKHNVLNAKFHAN-EAAIVAQAGYPAAVTIATN 497 (853)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TCCCEECCTTCHHH-HHHHHHTTTSTTCEEEEES
T ss_pred EEEEECcHHHHHHHHHHHHHC-----CCCEEEecCChhHH-HHHHHHhcCCCCeEEEecc
Confidence 799999999999998888774 56777788775422 2222211 2347999997
No 238
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=23.58 E-value=1.3e+02 Score=20.42 Aligned_cols=52 Identities=6% Similarity=-0.013 Sum_probs=39.3
Q ss_pred hccchHHHHHHHHHhCCCCceEEEEeeeCch------HHHHHHHHhCCCCeEEEEccC
Q 029993 89 LDMGFQKQISYIISRLPKLRRTGLFSATQTE------AVEELSKAGLRNPVRIEVRAE 140 (184)
Q Consensus 89 ~~~~~~~~l~~i~~~l~~~~q~i~~SAT~~~------~v~~~~~~~~~~~~~i~~~~~ 140 (184)
++..|...+.+.++...++-.++.|=.|=+. .+.++...+..+|+.+.++..
T Consensus 67 ~d~~y~~~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp~ 124 (141)
T 4e0q_A 67 INKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPL 124 (141)
T ss_dssp ECHHHHHHHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESCS
T ss_pred ecHHHHHHHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECCC
Confidence 3446788888888888888888888776432 255677788899999998876
No 239
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=23.46 E-value=1.5e+02 Score=27.04 Aligned_cols=52 Identities=12% Similarity=0.027 Sum_probs=36.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHH--cCCcEeeech
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEE--EGANLLIGTP 59 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~IlV~TP 59 (184)
+||.+.|.+-+..+.+.+.+. ++....+.|+....+ ...+.. ....|+|+|.
T Consensus 463 vLVft~Sie~sE~Ls~~L~~~-----Gi~~~vLnak~~~rE-a~iia~agr~G~VtIATn 516 (922)
T 1nkt_A 463 VLIGTTSVERSEYLSRQFTKR-----RIPHNVLNAKYHEQE-ATIIAVAGRRGGVTVATN 516 (922)
T ss_dssp EEEEESCHHHHHHHHHHHHHT-----TCCCEEECSSCHHHH-HHHHHTTTSTTCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHC-----CCCEEEecCChhHHH-HHHHHhcCCCCeEEEecc
Confidence 799999999999998888774 577888888754222 222211 2347999996
No 240
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=23.28 E-value=1.2e+02 Score=27.78 Aligned_cols=73 Identities=8% Similarity=0.016 Sum_probs=44.7
Q ss_pred EEEEeccHHHHHHHHHHHHHhhh------------------cC----------------CCceEEEEECCcchHHHHH--
Q 029993 2 GMIISPTRELSAQIYHVAQPFIS------------------TL----------------PDVKSMLLVGGVEVKADVK-- 45 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~------------------~~----------------~~~~~~~~~~~~~~~~~~~-- 45 (184)
+||.++|+.-|......+...+- .+ ....+..++||.....+..
T Consensus 339 ~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~ 418 (997)
T 4a4z_A 339 MVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 418 (997)
T ss_dssp EEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHH
Confidence 78999999988888776644210 00 0124677888876543322
Q ss_pred -HHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEe
Q 029993 46 -KIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVL 82 (184)
Q Consensus 46 -~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVv 82 (184)
...++..+|||||-- +. ..+|+.. ..+|+
T Consensus 419 ~~F~~G~~kVLvAT~~-----~a--~GIDiP~-~~VVi 448 (997)
T 4a4z_A 419 ILFSKGFIKVLFATET-----FA--MGLNLPT-RTVIF 448 (997)
T ss_dssp HHHHTTCCSEEEECTH-----HH--HSCCCCC-SEEEE
T ss_pred HHHHCCCCcEEEEchH-----hh--CCCCCCC-ceEEE
Confidence 223467899999982 22 3567666 55554
No 241
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=23.19 E-value=96 Score=23.14 Aligned_cols=15 Identities=27% Similarity=0.394 Sum_probs=12.5
Q ss_pred ceEEEechhhHhhcc
Q 029993 77 LVILVLDEADRLLDM 91 (184)
Q Consensus 77 l~~lVvDEaD~l~~~ 91 (184)
-..+++||+|.+...
T Consensus 117 ~~vl~iDEi~~l~~~ 131 (310)
T 1ofh_A 117 NGIVFIDEIDKICKK 131 (310)
T ss_dssp HCEEEEECGGGGSCC
T ss_pred CCEEEEEChhhcCcc
Confidence 569999999998754
No 242
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=23.06 E-value=1.3e+02 Score=22.02 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=11.1
Q ss_pred eEEEechhhHhhc
Q 029993 78 VILVLDEADRLLD 90 (184)
Q Consensus 78 ~~lVvDEaD~l~~ 90 (184)
.++++||+|.+..
T Consensus 106 ~il~iDeid~l~~ 118 (257)
T 1lv7_A 106 CIIFIDEIDAVGR 118 (257)
T ss_dssp EEEEETTHHHHTC
T ss_pred eeehhhhhhhhcc
Confidence 5899999999864
No 243
>4gic_A HDH, histidinol dehydrogenase; protein structure initiative, STR genomics, PSI-biology, NEW YORK structural genomics researc consortium; 2.05A {Methylococcus capsulatus}
Probab=22.52 E-value=3e+02 Score=22.63 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=42.4
Q ss_pred CEEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEE
Q 029993 1 MGMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVIL 80 (184)
Q Consensus 1 ~alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~l 80 (184)
+++.++++++|+.++...+.+..+.+|.-. --...+.+.+.=|++-+-+...++.+. +-+++|...
T Consensus 273 ~~iLvT~s~~la~~V~~~i~~~l~~l~r~~-----------i~~~sl~~~g~ii~v~~~~ea~~~~N~---~APEHLel~ 338 (423)
T 4gic_A 273 QAILISPDAAHLEAVQASIERLLPGMERAE-----------VIRTSLERRGGMILVDDLEQAAAVANR---IAPEHLELS 338 (423)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHGGGCTTHH-----------HHHHHHHHHCEEEECSSHHHHHHHHHH---HCCSEEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHhhCccHH-----------HHHHHHhcCceEEEEeehHHHHHHHHh---hChHHhhhh
Confidence 478999999999999999999887764211 111223334444556666666665543 456666654
Q ss_pred E
Q 029993 81 V 81 (184)
Q Consensus 81 V 81 (184)
+
T Consensus 339 ~ 339 (423)
T 4gic_A 339 V 339 (423)
T ss_dssp S
T ss_pred h
Confidence 3
No 244
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=22.00 E-value=84 Score=23.16 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=17.3
Q ss_pred ceEEEechhhHhhccchHHHHHHHHHh
Q 029993 77 LVILVLDEADRLLDMGFQKQISYIISR 103 (184)
Q Consensus 77 l~~lVvDEaD~l~~~~~~~~l~~i~~~ 103 (184)
-..+++||+|.+-.. ....+..++..
T Consensus 101 ~~~l~lDEi~~l~~~-~q~~Ll~~l~~ 126 (265)
T 2bjv_A 101 GGTLFLDELATAPMM-VQEKLLRVIEY 126 (265)
T ss_dssp TSEEEEESGGGSCHH-HHHHHHHHHHH
T ss_pred CcEEEEechHhcCHH-HHHHHHHHHHh
Confidence 368999999987543 34455555554
No 245
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=21.08 E-value=88 Score=24.19 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=12.0
Q ss_pred CceEEEechhhHhhc
Q 029993 76 NLVILVLDEADRLLD 90 (184)
Q Consensus 76 ~l~~lVvDEaD~l~~ 90 (184)
.-..+++||+|.+..
T Consensus 105 ~~~vl~iDEid~l~~ 119 (322)
T 1xwi_A 105 KPSIIFIDEIDSLCG 119 (322)
T ss_dssp SSEEEEEETTTGGGC
T ss_pred CCcEEEeecHHHhcc
Confidence 346899999999854
No 246
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=20.93 E-value=1.1e+02 Score=23.71 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=10.8
Q ss_pred eEEEechhhHhhc
Q 029993 78 VILVLDEADRLLD 90 (184)
Q Consensus 78 ~~lVvDEaD~l~~ 90 (184)
..+++||+|.|..
T Consensus 191 ~vl~IDEi~~l~~ 203 (368)
T 3uk6_A 191 GVLFIDEVHMLDI 203 (368)
T ss_dssp CEEEEESGGGSBH
T ss_pred ceEEEhhccccCh
Confidence 4999999998743
No 247
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=20.86 E-value=69 Score=20.74 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhcC---CCceEEEEECCcchHHHHHHHHHcCCcEeeechHHHHHHHHhcCCccCCCceEEEechhh
Q 029993 13 AQIYHVAQPFISTL---PDVKSMLLVGGVEVKADVKKIEEEGANLLIGTPGRLYDIMERMDVLDFRNLVILVLDEAD 86 (184)
Q Consensus 13 ~Qi~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~IlV~TP~~l~~~~~~~~~~~~~~l~~lVvDEaD 86 (184)
..+.+.+..+++.. .+-++.-+..+...+.....+.+..+++.+-+|.-+.+.+++.+.+..+ .+.++..||
T Consensus 25 ~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~~klvp~~--~y~~~~~~~ 99 (104)
T 3pc6_A 25 RRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEKQKLLPHQ--LYGVVPQAH 99 (104)
T ss_dssp HHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHHHTSCCCGG--GGBCCCCGG
T ss_pred HHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHhcCccCCcc--cceecchhh
Confidence 33445555554422 1223444444443434444555678999999999999999983333322 455555554
No 248
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=20.64 E-value=97 Score=25.99 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=33.4
Q ss_pred EEEEeccHHHHHHHHHHHHHhhhcCCCceEEEEECCc-chHHHHHHHHHcCCcEeeec-hHHHHHHHHhcCCccCCC---
Q 029993 2 GMIISPTRELSAQIYHVAQPFISTLPDVKSMLLVGGV-EVKADVKKIEEEGANLLIGT-PGRLYDIMERMDVLDFRN--- 76 (184)
Q Consensus 2 alIl~PtreLa~Qi~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~IlV~T-P~~l~~~~~~~~~~~~~~--- 76 (184)
+||++||...+.++++.+.. .. ..+-|.. +..+-.... ..+..|++|. -+.+.+ .+|+.+
T Consensus 387 ~lvff~S~~~~~~v~~~l~~-------~~-~~~q~~~~~~~~~l~~f-~~~~~il~~V~~~~~~E------GiD~~~~~~ 451 (540)
T 2vl7_A 387 VLVFFPSYEMLESVRIHLSG-------IP-VIEENKKTRHEEVLELM-KTGKYLVMLVMRAKESE------GVEFREKEN 451 (540)
T ss_dssp EEEEESCHHHHHHHHTTCTT-------SC-EEESTTTCCHHHHHHHH-HTSCCEEEEEC---------------------
T ss_pred EEEEeCCHHHHHHHHHHhcc-------Cc-eEecCCCCcHHHHHHHH-hcCCeEEEEEecCceec------ceecCCCcc
Confidence 68999999999988765432 22 2223332 333333333 3355688743 234444 456554
Q ss_pred -ceEEEech
Q 029993 77 -LVILVLDE 84 (184)
Q Consensus 77 -l~~lVvDE 84 (184)
++.+|++.
T Consensus 452 ~~~~Vii~~ 460 (540)
T 2vl7_A 452 LFESLVLAG 460 (540)
T ss_dssp CEEEEEEES
T ss_pred cccEEEEEC
Confidence 88888864
No 249
>2x9q_A Cyclodipeptide synthetase; ligase; 2.02A {Mycobacterium tuberculosis}
Probab=20.55 E-value=63 Score=25.11 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCcEeee--------chHHHHHHHHhcCCccCCCceEEEechhhH
Q 029993 42 ADVKKIEEEGANLLIG--------TPGRLYDIMERMDVLDFRNLVILVLDEADR 87 (184)
Q Consensus 42 ~~~~~l~~~~~~IlV~--------TP~~l~~~~~~~~~~~~~~l~~lVvDEaD~ 87 (184)
+.-..+..++-|++|| +..+|..++.. ..-+|+++.+++-||...
T Consensus 71 ~~C~~I~~r~~HaliGISPfNSyFS~dri~~Li~W-a~~~F~~VdVl~~d~~~~ 123 (289)
T 2x9q_A 71 QQCQIIHTEGDHAVIGVSPGNSYFSRQRLRDLGLW-GLTNFDRVDFVYTDVHVA 123 (289)
T ss_dssp HHHHHHHHHTCEEEEEECTTCTTSCHHHHHHHHHH-HHHHCSEEEEEECCSSHH
T ss_pred hhHHHHHhcCCeEEEEECCCCCccCHHHHHHHHHH-HHhcCCeeEEEecChHHH
Confidence 3445566778899999 56788888887 667899999999998643
Done!