Query 029994
Match_columns 184
No_of_seqs 228 out of 2139
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:52:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 1.6E-22 3.5E-27 148.1 16.0 91 12-102 23-114 (144)
2 KOG0533 RRM motif-containing p 99.8 7.5E-19 1.6E-23 137.5 16.3 156 19-175 79-239 (243)
3 TIGR01659 sex-lethal sex-letha 99.8 5E-19 1.1E-23 146.5 15.9 84 21-104 191-277 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 4.9E-18 1.1E-22 140.8 13.3 84 20-103 266-350 (352)
5 TIGR01659 sex-lethal sex-letha 99.7 1.2E-17 2.7E-22 138.2 11.7 84 18-101 102-186 (346)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.7E-17 3.6E-22 137.6 11.2 83 21-103 1-84 (352)
7 PF00076 RRM_1: RNA recognitio 99.7 2.2E-17 4.8E-22 105.6 9.1 70 26-95 1-70 (70)
8 KOG0107 Alternative splicing f 99.7 1.4E-16 2.9E-21 117.2 13.9 81 20-104 7-87 (195)
9 KOG0105 Alternative splicing f 99.7 3.5E-17 7.5E-22 121.5 10.5 79 21-101 4-82 (241)
10 KOG0121 Nuclear cap-binding pr 99.7 1.3E-17 2.8E-22 116.8 7.4 83 19-101 32-115 (153)
11 TIGR01648 hnRNP-R-Q heterogene 99.7 1.5E-16 3.2E-21 138.6 15.7 78 20-104 230-309 (578)
12 KOG0130 RNA-binding protein RB 99.7 6E-17 1.3E-21 114.5 7.8 88 17-104 66-154 (170)
13 KOG0122 Translation initiation 99.7 1.8E-16 3.8E-21 122.1 10.9 84 19-102 185-269 (270)
14 KOG4207 Predicted splicing fac 99.7 2.8E-16 6.1E-21 118.4 11.4 90 15-104 5-95 (256)
15 KOG0113 U1 small nuclear ribon 99.7 2.8E-15 6.1E-20 118.4 15.2 90 18-107 96-186 (335)
16 KOG0125 Ataxin 2-binding prote 99.7 4E-16 8.6E-21 124.6 10.0 91 13-104 86-176 (376)
17 PF14259 RRM_6: RNA recognitio 99.7 6.8E-16 1.5E-20 99.1 9.2 70 26-95 1-70 (70)
18 KOG0117 Heterogeneous nuclear 99.7 2E-15 4.4E-20 124.7 12.9 93 10-103 71-165 (506)
19 KOG0149 Predicted RNA-binding 99.6 1E-15 2.3E-20 117.3 9.6 82 19-101 8-90 (247)
20 PLN03120 nucleic acid binding 99.6 2.1E-15 4.5E-20 118.7 11.2 78 23-103 4-81 (260)
21 TIGR01645 half-pint poly-U bin 99.6 2.6E-15 5.6E-20 131.3 11.3 83 21-103 202-285 (612)
22 TIGR01645 half-pint poly-U bin 99.6 2.5E-15 5.4E-20 131.4 10.5 82 18-99 102-184 (612)
23 TIGR01648 hnRNP-R-Q heterogene 99.6 3.6E-15 7.9E-20 130.0 11.0 78 20-97 55-133 (578)
24 TIGR01628 PABP-1234 polyadenyl 99.6 5.3E-15 1.2E-19 130.0 11.0 78 24-101 1-79 (562)
25 KOG4212 RNA-binding protein hn 99.6 1.5E-14 3.2E-19 119.5 12.3 82 23-104 44-126 (608)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.6 1.2E-14 2.5E-19 126.2 12.4 83 20-102 292-375 (509)
27 TIGR01622 SF-CC1 splicing fact 99.6 1.2E-14 2.6E-19 124.6 12.2 81 22-102 185-266 (457)
28 PLN03213 repressor of silencin 99.6 5.8E-15 1.3E-19 123.6 9.4 79 21-102 8-88 (759)
29 smart00362 RRM_2 RNA recogniti 99.6 1.4E-14 3E-19 91.8 9.2 72 25-97 1-72 (72)
30 TIGR01628 PABP-1234 polyadenyl 99.6 1.1E-14 2.3E-19 128.1 11.4 84 20-103 282-365 (562)
31 PLN03121 nucleic acid binding 99.6 2.3E-14 5E-19 111.3 11.2 77 22-101 4-80 (243)
32 KOG0131 Splicing factor 3b, su 99.6 1E-14 2.2E-19 108.0 7.3 85 18-102 4-89 (203)
33 TIGR01622 SF-CC1 splicing fact 99.5 3.9E-14 8.5E-19 121.5 11.1 80 21-101 87-167 (457)
34 smart00360 RRM RNA recognition 99.5 4.8E-14 1E-18 88.9 8.7 70 28-97 1-71 (71)
35 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 7.1E-14 1.5E-18 120.8 12.6 80 20-103 272-352 (481)
36 KOG0117 Heterogeneous nuclear 99.5 5.5E-14 1.2E-18 116.3 11.1 81 18-105 254-334 (506)
37 cd00590 RRM RRM (RNA recogniti 99.5 1.4E-13 3E-18 87.6 10.1 74 25-98 1-74 (74)
38 KOG0145 RNA-binding protein EL 99.5 8.1E-14 1.8E-18 108.6 10.5 86 17-102 272-358 (360)
39 KOG0114 Predicted RNA-binding 99.5 6.2E-14 1.4E-18 94.9 8.6 83 18-102 13-95 (124)
40 KOG0145 RNA-binding protein EL 99.5 4.6E-14 1E-18 109.9 9.1 86 19-104 37-123 (360)
41 KOG0111 Cyclophilin-type pepti 99.5 9.9E-15 2.2E-19 111.1 4.1 84 20-103 7-91 (298)
42 COG0724 RNA-binding proteins ( 99.5 1E-13 2.3E-18 108.9 10.1 79 23-101 115-194 (306)
43 KOG0116 RasGAP SH3 binding pro 99.5 4.2E-13 9.2E-18 112.8 14.1 85 19-104 284-369 (419)
44 KOG0126 Predicted RNA-binding 99.5 2.4E-15 5.3E-20 111.3 0.6 82 20-101 32-114 (219)
45 KOG0148 Apoptosis-promoting RN 99.5 1.4E-13 3E-18 107.7 9.4 81 19-104 160-240 (321)
46 KOG0108 mRNA cleavage and poly 99.5 8.4E-14 1.8E-18 117.6 8.5 81 24-104 19-100 (435)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 2.2E-13 4.7E-18 117.8 10.3 75 22-101 1-77 (481)
48 KOG0148 Apoptosis-promoting RN 99.5 2.6E-13 5.5E-18 106.2 8.4 84 20-103 59-143 (321)
49 KOG0144 RNA-binding protein CU 99.5 7.6E-14 1.6E-18 115.1 5.7 86 21-106 122-210 (510)
50 KOG0144 RNA-binding protein CU 99.5 1.8E-13 3.9E-18 112.9 7.7 85 21-105 32-120 (510)
51 KOG0146 RNA-binding protein ET 99.4 3.1E-13 6.8E-18 105.7 6.5 88 17-104 279-367 (371)
52 KOG0127 Nucleolar protein fibr 99.4 9.9E-13 2.1E-17 111.4 9.6 85 21-105 115-199 (678)
53 PF13893 RRM_5: RNA recognitio 99.4 2E-12 4.3E-17 79.5 7.9 56 40-99 1-56 (56)
54 KOG0127 Nucleolar protein fibr 99.4 1.6E-12 3.4E-17 110.1 9.3 88 17-104 286-380 (678)
55 KOG0415 Predicted peptidyl pro 99.4 7.8E-13 1.7E-17 107.0 6.3 84 19-102 235-319 (479)
56 smart00361 RRM_1 RNA recogniti 99.4 3.4E-12 7.3E-17 82.2 7.9 61 37-97 2-70 (70)
57 KOG0109 RNA-binding protein LA 99.3 1.2E-12 2.7E-17 103.3 5.8 72 24-102 3-74 (346)
58 KOG0124 Polypyrimidine tract-b 99.3 9.6E-13 2.1E-17 106.9 4.6 76 23-98 113-189 (544)
59 KOG0147 Transcriptional coacti 99.3 2.5E-12 5.3E-17 108.9 6.6 81 26-106 281-362 (549)
60 KOG0123 Polyadenylate-binding 99.3 7.9E-12 1.7E-16 104.4 9.5 78 26-105 79-156 (369)
61 TIGR01642 U2AF_lg U2 snRNP aux 99.3 1.9E-11 4E-16 106.2 10.6 77 18-100 170-258 (509)
62 KOG0131 Splicing factor 3b, su 99.3 1.5E-11 3.3E-16 91.3 7.2 91 15-105 88-180 (203)
63 KOG0109 RNA-binding protein LA 99.2 1.2E-11 2.7E-16 97.7 5.8 80 20-106 75-154 (346)
64 KOG4206 Spliceosomal protein s 99.2 7.2E-11 1.6E-15 90.4 8.7 85 18-104 4-92 (221)
65 KOG4661 Hsp27-ERE-TATA-binding 99.2 6.7E-11 1.4E-15 101.0 7.9 82 23-104 405-487 (940)
66 KOG4208 Nucleolar RNA-binding 99.2 1.5E-10 3.3E-15 87.5 8.6 86 17-102 43-130 (214)
67 KOG0146 RNA-binding protein ET 99.1 1.6E-10 3.6E-15 90.6 7.0 84 22-105 18-104 (371)
68 KOG0153 Predicted RNA-binding 99.1 2.3E-10 5E-15 92.5 8.0 82 15-101 220-302 (377)
69 KOG0132 RNA polymerase II C-te 99.1 2.1E-10 4.6E-15 100.7 8.2 79 23-106 421-499 (894)
70 KOG4212 RNA-binding protein hn 99.1 2.4E-10 5.1E-15 95.0 7.9 79 17-99 530-608 (608)
71 KOG4205 RNA-binding protein mu 99.1 2.5E-10 5.4E-15 92.9 7.8 102 5-107 79-181 (311)
72 KOG0124 Polypyrimidine tract-b 99.1 3E-10 6.5E-15 92.6 7.4 81 23-103 210-291 (544)
73 KOG0110 RNA-binding protein (R 99.1 4.5E-10 9.7E-15 97.9 8.2 77 24-100 516-596 (725)
74 KOG0123 Polyadenylate-binding 99.1 6.9E-10 1.5E-14 92.8 8.5 75 24-103 2-76 (369)
75 KOG1548 Transcription elongati 99.0 8.6E-10 1.9E-14 89.2 8.4 82 20-101 131-220 (382)
76 KOG4205 RNA-binding protein mu 99.0 3.8E-10 8.3E-15 91.8 5.3 82 22-104 5-87 (311)
77 KOG0110 RNA-binding protein (R 99.0 3.4E-10 7.3E-15 98.6 4.8 87 18-104 608-695 (725)
78 KOG1457 RNA binding protein (c 99.0 9.2E-09 2E-13 78.9 11.6 86 22-107 33-123 (284)
79 KOG4454 RNA binding protein (R 99.0 2.4E-10 5.3E-15 87.2 2.7 83 19-102 5-87 (267)
80 PF13865 FoP_duplication: C-te 99.0 3.1E-09 6.8E-14 68.9 7.4 21 157-177 36-56 (74)
81 KOG1995 Conserved Zn-finger pr 99.0 6.3E-09 1.4E-13 84.6 10.5 86 19-104 62-156 (351)
82 KOG4209 Splicing factor RNPS1, 98.9 4E-09 8.7E-14 82.8 7.4 85 19-104 97-182 (231)
83 KOG0106 Alternative splicing f 98.9 1.6E-09 3.5E-14 83.5 4.0 71 24-101 2-72 (216)
84 KOG4211 Splicing factor hnRNP- 98.8 3.3E-08 7.1E-13 83.3 8.8 81 19-102 6-86 (510)
85 KOG0151 Predicted splicing reg 98.8 3.2E-08 6.8E-13 86.6 8.0 83 19-101 170-256 (877)
86 KOG4660 Protein Mei2, essentia 98.7 1.6E-08 3.6E-13 86.2 5.4 72 20-95 72-143 (549)
87 KOG0226 RNA-binding proteins [ 98.7 2.1E-08 4.5E-13 78.3 4.8 85 19-103 186-271 (290)
88 PF04059 RRM_2: RNA recognitio 98.7 3.5E-07 7.7E-12 62.3 9.4 78 24-101 2-86 (97)
89 KOG1190 Polypyrimidine tract-b 98.6 1.6E-07 3.4E-12 77.8 8.5 79 23-105 297-376 (492)
90 KOG4211 Splicing factor hnRNP- 98.6 2.1E-07 4.6E-12 78.6 8.6 79 21-100 101-180 (510)
91 PF08777 RRM_3: RNA binding mo 98.6 2.4E-07 5.1E-12 64.3 6.4 73 23-100 1-78 (105)
92 KOG0120 Splicing factor U2AF, 98.5 1.2E-07 2.5E-12 81.4 5.4 92 12-103 278-370 (500)
93 KOG4849 mRNA cleavage factor I 98.5 1.6E-07 3.5E-12 76.4 5.8 79 22-100 79-160 (498)
94 PF11608 Limkain-b1: Limkain b 98.3 2.6E-06 5.7E-11 55.9 6.9 70 24-102 3-77 (90)
95 KOG0106 Alternative splicing f 98.3 3.5E-07 7.7E-12 70.7 3.3 73 17-96 93-165 (216)
96 KOG1457 RNA binding protein (c 98.2 1.5E-06 3.2E-11 67.0 4.6 69 18-89 205-273 (284)
97 KOG1456 Heterogeneous nuclear 98.2 1.7E-05 3.8E-10 65.3 11.0 84 17-104 281-365 (494)
98 KOG4210 Nuclear localization s 98.2 2.1E-06 4.5E-11 69.7 4.6 85 18-103 179-265 (285)
99 KOG0147 Transcriptional coacti 98.2 8.2E-07 1.8E-11 75.9 2.2 79 23-102 179-258 (549)
100 KOG4206 Spliceosomal protein s 98.2 1.7E-05 3.8E-10 61.1 8.9 80 17-100 140-220 (221)
101 KOG4307 RNA binding protein RB 98.1 1.5E-05 3.3E-10 70.2 8.3 74 25-98 869-943 (944)
102 KOG1456 Heterogeneous nuclear 98.1 0.00015 3.3E-09 59.9 13.5 83 17-103 114-200 (494)
103 KOG0105 Alternative splicing f 98.1 0.00018 3.8E-09 54.2 12.3 76 17-98 109-186 (241)
104 KOG1190 Polypyrimidine tract-b 98.1 2.4E-05 5.2E-10 65.1 8.3 86 14-102 404-491 (492)
105 COG5175 MOT2 Transcriptional r 97.9 2.6E-05 5.6E-10 63.5 6.4 80 23-102 114-203 (480)
106 KOG1365 RNA-binding protein Fu 97.9 3E-05 6.6E-10 64.1 6.8 83 19-101 276-361 (508)
107 KOG2314 Translation initiation 97.9 4.3E-05 9.4E-10 65.9 7.7 80 22-101 57-143 (698)
108 KOG1548 Transcription elongati 97.9 6.2E-05 1.3E-09 61.5 7.8 87 17-106 259-356 (382)
109 KOG2202 U2 snRNP splicing fact 97.9 7.8E-06 1.7E-10 64.1 2.3 64 39-102 84-148 (260)
110 KOG0120 Splicing factor U2AF, 97.8 7.2E-05 1.6E-09 64.5 7.1 62 40-101 426-491 (500)
111 PF14605 Nup35_RRM_2: Nup53/35 97.8 8.6E-05 1.9E-09 44.9 5.4 52 24-81 2-53 (53)
112 KOG1855 Predicted RNA-binding 97.6 5.3E-05 1.2E-09 63.4 3.4 66 21-86 229-308 (484)
113 KOG3152 TBP-binding protein, a 97.6 8.3E-05 1.8E-09 58.4 4.3 72 22-93 73-157 (278)
114 KOG4307 RNA binding protein RB 97.6 7.4E-05 1.6E-09 66.0 4.4 84 17-100 428-512 (944)
115 KOG1365 RNA-binding protein Fu 97.5 0.00011 2.4E-09 60.8 4.6 77 22-99 160-240 (508)
116 PF13865 FoP_duplication: C-te 97.5 0.00029 6.3E-09 45.6 5.2 18 160-177 54-71 (74)
117 KOG0129 Predicted RNA-binding 97.5 0.00037 8.1E-09 59.7 7.2 68 16-83 363-432 (520)
118 PF10309 DUF2414: Protein of u 97.5 0.00089 1.9E-08 41.7 6.9 55 23-84 5-62 (62)
119 KOG2416 Acinus (induces apopto 97.5 0.00011 2.5E-09 63.7 3.9 80 17-101 438-521 (718)
120 KOG0129 Predicted RNA-binding 97.5 0.00059 1.3E-08 58.5 7.9 63 21-84 257-326 (520)
121 KOG0112 Large RNA-binding prot 97.5 0.00021 4.6E-09 64.7 5.5 82 19-105 451-534 (975)
122 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00082 1.8E-08 46.1 7.1 76 22-99 5-89 (100)
123 PF08675 RNA_bind: RNA binding 97.4 0.0015 3.2E-08 43.0 7.3 58 21-86 7-64 (87)
124 PF08952 DUF1866: Domain of un 97.3 0.00087 1.9E-08 48.8 6.6 58 39-104 52-109 (146)
125 KOG0128 RNA-binding protein SA 97.3 0.00017 3.6E-09 65.0 3.4 82 20-101 733-814 (881)
126 KOG1996 mRNA splicing factor [ 97.3 0.001 2.2E-08 53.5 6.8 65 37-101 300-366 (378)
127 KOG4676 Splicing factor, argin 97.1 0.00089 1.9E-08 55.7 5.4 76 24-100 8-87 (479)
128 KOG2591 c-Mpl binding protein, 97.0 0.0015 3.1E-08 56.7 5.4 76 17-98 169-248 (684)
129 KOG0128 RNA-binding protein SA 96.9 4.5E-05 9.9E-10 68.5 -4.4 67 24-90 668-735 (881)
130 KOG2193 IGF-II mRNA-binding pr 96.5 0.0027 5.9E-08 53.5 3.8 74 24-102 2-76 (584)
131 KOG0115 RNA-binding protein p5 96.5 0.004 8.6E-08 49.2 4.5 62 24-85 32-93 (275)
132 PF03467 Smg4_UPF3: Smg-4/UPF3 96.5 0.0055 1.2E-07 46.4 4.9 72 21-92 5-83 (176)
133 PRK11634 ATP-dependent RNA hel 96.5 0.055 1.2E-06 48.8 11.9 67 25-100 488-561 (629)
134 KOG2068 MOT2 transcription fac 95.9 0.0027 5.9E-08 51.9 0.7 80 24-103 78-164 (327)
135 KOG2253 U1 snRNP complex, subu 95.8 0.012 2.5E-07 52.2 4.1 73 18-98 35-107 (668)
136 KOG0112 Large RNA-binding prot 95.7 0.0023 5E-08 58.2 -0.4 80 21-100 370-449 (975)
137 PF03880 DbpA: DbpA RNA bindin 95.6 0.093 2E-06 33.7 6.9 59 33-99 11-74 (74)
138 PF15023 DUF4523: Protein of u 95.2 0.18 4E-06 36.6 7.9 75 18-99 81-159 (166)
139 KOG2135 Proteins containing th 95.1 0.014 2.9E-07 49.9 2.2 74 23-102 372-446 (526)
140 PF04847 Calcipressin: Calcipr 94.9 0.095 2.1E-06 39.9 6.1 62 36-102 8-71 (184)
141 KOG2193 IGF-II mRNA-binding pr 94.6 0.0027 5.9E-08 53.5 -3.1 80 23-104 80-159 (584)
142 KOG4285 Mitotic phosphoprotein 94.5 0.17 3.6E-06 41.2 6.8 63 24-93 198-260 (350)
143 KOG4660 Protein Mei2, essentia 94.2 0.083 1.8E-06 46.0 4.9 78 24-101 389-472 (549)
144 PF07576 BRAP2: BRCA1-associat 94.0 1.3 2.8E-05 30.8 9.7 68 23-91 12-81 (110)
145 PF11767 SET_assoc: Histone ly 93.8 0.45 9.7E-06 30.0 6.4 55 34-96 11-65 (66)
146 KOG4574 RNA-binding protein (c 93.4 0.065 1.4E-06 48.9 2.9 69 30-103 305-375 (1007)
147 KOG4210 Nuclear localization s 92.8 0.075 1.6E-06 43.3 2.2 81 21-101 86-167 (285)
148 KOG2318 Uncharacterized conser 91.5 1.1 2.4E-05 39.6 7.9 82 17-98 168-302 (650)
149 KOG0804 Cytoplasmic Zn-finger 89.9 1.7 3.6E-05 37.4 7.3 68 23-91 74-142 (493)
150 KOG4410 5-formyltetrahydrofola 88.8 2.4 5.1E-05 34.5 7.1 46 24-74 331-377 (396)
151 KOG4483 Uncharacterized conser 86.9 1.6 3.5E-05 37.0 5.3 56 21-82 389-445 (528)
152 KOG4454 RNA binding protein (R 81.2 0.34 7.4E-06 37.8 -0.8 81 18-98 75-159 (267)
153 KOG4019 Calcineurin-mediated s 79.0 1.9 4.2E-05 32.6 2.6 77 21-102 8-90 (193)
154 PF10567 Nab6_mRNP_bdg: RNA-re 77.4 8.6 0.00019 31.4 6.0 78 23-100 15-106 (309)
155 KOG4676 Splicing factor, argin 75.6 0.39 8.4E-06 40.5 -2.1 75 24-102 152-226 (479)
156 smart00596 PRE_C2HC PRE_C2HC d 75.6 6.5 0.00014 24.9 3.9 61 38-101 2-64 (69)
157 PF15513 DUF4651: Domain of un 75.4 9.1 0.0002 23.7 4.4 20 38-57 9-28 (62)
158 PF07530 PRE_C2HC: Associated 73.4 9.6 0.00021 24.0 4.3 61 38-101 2-64 (68)
159 COG5638 Uncharacterized conser 70.2 21 0.00046 30.6 6.8 45 13-57 136-185 (622)
160 KOG4365 Uncharacterized conser 68.9 0.73 1.6E-05 39.5 -2.0 79 23-102 3-82 (572)
161 KOG2295 C2H2 Zn-finger protein 68.8 0.78 1.7E-05 40.3 -1.9 71 21-91 229-300 (648)
162 KOG4213 RNA-binding protein La 67.3 17 0.00037 27.6 5.1 49 35-83 118-169 (205)
163 PRK11901 hypothetical protein; 65.7 41 0.0009 27.9 7.5 60 22-86 244-306 (327)
164 KOG4008 rRNA processing protei 63.5 7.1 0.00015 30.9 2.6 36 18-53 35-70 (261)
165 COG0724 RNA-binding proteins ( 63.0 9.8 0.00021 29.0 3.5 65 16-80 218-283 (306)
166 COG4907 Predicted membrane pro 62.6 8.2 0.00018 33.6 3.1 13 74-86 525-537 (595)
167 PF02714 DUF221: Domain of unk 56.8 16 0.00034 29.9 3.8 35 67-103 1-35 (325)
168 KOG1295 Nonsense-mediated deca 56.3 12 0.00027 31.5 3.0 68 23-90 7-78 (376)
169 PF03468 XS: XS domain; Inter 56.1 22 0.00048 24.9 3.9 49 24-74 9-66 (116)
170 PRK11230 glycolate oxidase sub 51.4 79 0.0017 27.9 7.5 63 23-85 189-255 (499)
171 COG4907 Predicted membrane pro 50.6 17 0.00036 31.8 3.0 11 38-48 489-499 (595)
172 PF07292 NID: Nmi/IFP 35 domai 49.9 9.3 0.0002 25.5 1.1 25 20-44 49-73 (88)
173 PRK06958 single-stranded DNA-b 48.0 73 0.0016 24.2 5.9 12 23-34 5-16 (182)
174 PF14893 PNMA: PNMA 45.3 25 0.00055 29.3 3.2 28 19-46 14-41 (331)
175 COG3254 Uncharacterized conser 43.0 97 0.0021 21.3 5.2 41 38-81 27-68 (105)
176 PF11430 EGL-1: Programmed cel 42.2 11 0.00025 17.9 0.4 10 164-173 12-21 (21)
177 KOG0156 Cytochrome P450 CYP2 s 41.3 72 0.0016 28.1 5.6 59 27-94 36-97 (489)
178 COG1512 Beta-propeller domains 40.9 46 0.00099 27.0 4.0 10 37-46 80-89 (271)
179 KOG2891 Surface glycoprotein [ 39.8 50 0.0011 27.0 4.0 36 22-57 148-195 (445)
180 COG5193 LHP1 La protein, small 39.7 12 0.00027 31.8 0.6 59 24-82 175-244 (438)
181 PRK10905 cell division protein 39.3 92 0.002 25.9 5.5 60 23-86 247-308 (328)
182 KOG3293 Small nuclear ribonucl 37.8 44 0.00095 23.6 3.0 11 85-95 57-67 (134)
183 PF09707 Cas_Cas2CT1978: CRISP 37.1 84 0.0018 20.8 4.2 50 21-72 23-72 (86)
184 PF03438 Pneumo_NS1: Pneumovir 35.7 28 0.00062 23.9 1.8 20 160-179 112-131 (136)
185 PF11411 DNA_ligase_IV: DNA li 35.1 32 0.00068 18.9 1.6 16 33-48 19-34 (36)
186 KOG0116 RasGAP SH3 binding pro 35.1 67 0.0015 27.8 4.3 11 73-83 301-311 (419)
187 PLN02805 D-lactate dehydrogena 34.6 2E+02 0.0044 25.8 7.5 50 36-85 279-332 (555)
188 PF03439 Spt5-NGN: Early trans 34.2 47 0.001 21.6 2.6 24 63-86 43-66 (84)
189 TIGR00387 glcD glycolate oxida 30.3 2.2E+02 0.0047 24.3 6.7 49 37-85 146-198 (413)
190 KOG2187 tRNA uracil-5-methyltr 29.1 87 0.0019 27.9 4.1 39 64-102 63-101 (534)
191 PF11823 DUF3343: Protein of u 28.6 81 0.0017 19.7 3.0 24 66-89 3-26 (73)
192 PF07237 DUF1428: Protein of u 28.6 2E+02 0.0043 19.8 5.8 45 40-84 25-85 (103)
193 PF00403 HMA: Heavy-metal-asso 28.1 1.3E+02 0.0029 17.6 6.4 54 25-83 1-58 (62)
194 PRK06958 single-stranded DNA-b 27.6 2.4E+02 0.0052 21.4 5.8 9 161-169 171-179 (182)
195 COG0030 KsgA Dimethyladenosine 26.8 1.1E+02 0.0024 24.6 4.1 31 23-53 95-125 (259)
196 PRK11558 putative ssRNA endonu 26.5 1.2E+02 0.0026 20.6 3.6 51 21-73 25-75 (97)
197 PRK11634 ATP-dependent RNA hel 26.2 1.1E+02 0.0024 27.9 4.4 9 74-82 501-509 (629)
198 PF04026 SpoVG: SpoVG; InterP 26.0 1.6E+02 0.0035 19.3 4.1 25 49-73 2-27 (84)
199 COG3171 Uncharacterized protei 25.8 64 0.0014 22.5 2.2 22 160-184 40-61 (119)
200 PHA01632 hypothetical protein 25.8 82 0.0018 19.1 2.4 20 27-46 20-39 (64)
201 KOG0226 RNA-binding proteins [ 25.7 30 0.00066 27.8 0.7 75 23-97 96-173 (290)
202 PF15502 MPLKIP: M-phase-speci 25.7 1.1E+02 0.0025 22.3 3.7 12 167-182 114-125 (151)
203 PHA00370 III attachment protei 25.5 1.7E+02 0.0036 23.7 4.7 7 31-37 12-18 (297)
204 PRK10629 EnvZ/OmpR regulon mod 25.3 2.5E+02 0.0055 19.9 8.1 72 22-100 34-109 (127)
205 cd00027 BRCT Breast Cancer Sup 25.1 1.3E+02 0.0028 17.2 3.5 26 24-49 2-27 (72)
206 TIGR03636 L23_arch archaeal ri 24.6 2E+02 0.0044 18.5 5.3 56 26-83 16-73 (77)
207 PRK14548 50S ribosomal protein 24.1 2.2E+02 0.0047 18.7 5.1 56 26-83 23-80 (84)
208 KOG1232 Proteins containing th 23.4 1.2E+02 0.0027 26.1 3.9 48 34-81 235-286 (511)
209 KOG1655 Protein involved in va 23.3 69 0.0015 24.7 2.2 17 163-179 128-144 (218)
210 PF00398 RrnaAD: Ribosomal RNA 23.0 85 0.0018 24.9 2.8 28 22-49 96-125 (262)
211 PF13689 DUF4154: Domain of un 21.9 2.1E+02 0.0046 20.4 4.5 60 37-100 2-61 (145)
212 PF08156 NOP5NT: NOP5NT (NUC12 21.8 27 0.00058 21.9 -0.3 37 38-84 27-64 (67)
213 PRK13259 regulatory protein Sp 21.7 1.9E+02 0.0042 19.5 3.8 25 49-73 2-27 (94)
214 KOG3172 Small nuclear ribonucl 21.6 2.8E+02 0.0062 19.1 5.7 21 81-101 55-75 (119)
215 cd04904 ACT_AAAH ACT domain of 20.3 2.3E+02 0.005 17.5 7.8 50 37-86 14-65 (74)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.90 E-value=1.6e-22 Score=148.13 Aligned_cols=91 Identities=24% Similarity=0.452 Sum_probs=84.0
Q ss_pred CCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 029994 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLD 90 (184)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~ 90 (184)
..+...+....+++|||+|||+.++|++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.
T Consensus 23 ~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~ 102 (144)
T PLN03134 23 VTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN 102 (144)
T ss_pred cccccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345556667889999999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CceEEEEEeeCC
Q 029994 91 GKPMKIEIVGTN 102 (184)
Q Consensus 91 g~~i~V~~~~~~ 102 (184)
++.|+|+++..+
T Consensus 103 Gr~l~V~~a~~~ 114 (144)
T PLN03134 103 GRHIRVNPANDR 114 (144)
T ss_pred CEEEEEEeCCcC
Confidence 999999998754
No 2
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.82 E-value=7.5e-19 Score=137.47 Aligned_cols=156 Identities=45% Similarity=0.687 Sum_probs=105.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
.....++|+|.|||+.|+++||+++|.+|+.++.+.+.+++.+.+.|+|-|.|...++|.+||+.|++..++|+.|+|.+
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 44445899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCC-CCCCCCC-CCCCC-CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCChhhHhHHHHHH
Q 029994 99 VGTNIATRTAAP-AANVNFG-NSNGV-PRGGQGRGGAFRRL--RGGGGGGGRGFGRGRGRGRERNEKISAEDLDADLDKY 173 (184)
Q Consensus 99 ~~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~~gg~~g~g--~ggg~~g~~g~~~g~~~g~~r~~~~~~~~lD~el~~y 173 (184)
..+........- .....+. +..+. .+...+++. .+.. +++....++-...++...+....++++||||+|||+|
T Consensus 159 i~~~~~~~r~~~~~~~~~r~~~~~r~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~R~~k~~~tae~lDaeld~Y 237 (243)
T KOG0533|consen 159 ISSPSQSKRLPVGATKPLRAPNSNRTPARVSRGDKA-SGASKRRRGAGRPGGKFKGGKRGKREAKPEKTAEELDAELDAY 237 (243)
T ss_pred ecCccccccccccccccccccccccccccccCCCCc-cCcccccCCCccccccccCCCCCCcCCcCcccHHHHHHHHHHH
Confidence 887554432110 0000000 00010 000001100 0001 1111100111122223344577799999999999999
Q ss_pred hh
Q 029994 174 YS 175 (184)
Q Consensus 174 ~~ 175 (184)
|+
T Consensus 238 ~~ 239 (243)
T KOG0533|consen 238 MA 239 (243)
T ss_pred Hh
Confidence 99
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.82 E-value=5e-19 Score=146.50 Aligned_cols=84 Identities=25% Similarity=0.522 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCC--ceEEEE
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDG--KPMKIE 97 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g--~~i~V~ 97 (184)
...++|||+|||+.++|++|+++|++||.|+.|+|+.++ ++++++||||+|.+.++|++||+.||+..|.+ ++|+|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 346789999999999999999999999999999999998 89999999999999999999999999998876 688888
Q ss_pred EeeCCCC
Q 029994 98 IVGTNIA 104 (184)
Q Consensus 98 ~~~~~~~ 104 (184)
+++....
T Consensus 271 ~a~~~~~ 277 (346)
T TIGR01659 271 LAEEHGK 277 (346)
T ss_pred ECCcccc
Confidence 8876543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=4.9e-18 Score=140.79 Aligned_cols=84 Identities=18% Similarity=0.266 Sum_probs=78.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 029994 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
...+.+|||+|||+.+++++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 266 ~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 266 DGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3445689999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred eeCCC
Q 029994 99 VGTNI 103 (184)
Q Consensus 99 ~~~~~ 103 (184)
+..+.
T Consensus 346 ~~~~~ 350 (352)
T TIGR01661 346 KTNKA 350 (352)
T ss_pred ccCCC
Confidence 88654
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.75 E-value=1.2e-17 Score=138.21 Aligned_cols=84 Identities=25% Similarity=0.408 Sum_probs=79.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 029994 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
......++|||+|||++++|++|+++|++||+|+.|+|+.++ ++++++||||+|.++++|++||+.||+..|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 455578999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEeeC
Q 029994 97 EIVGT 101 (184)
Q Consensus 97 ~~~~~ 101 (184)
.++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 98765
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.74 E-value=1.7e-17 Score=137.63 Aligned_cols=83 Identities=29% Similarity=0.492 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
++.++|||+|||..++|++|+++|++||+|..|+|+.++ +++++|||||+|.+.++|++||+.||+..|.|+.|+|+++
T Consensus 1 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 1 ESKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 357899999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred eCCC
Q 029994 100 GTNI 103 (184)
Q Consensus 100 ~~~~ 103 (184)
++..
T Consensus 81 ~~~~ 84 (352)
T TIGR01661 81 RPSS 84 (352)
T ss_pred cccc
Confidence 7544
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=2.2e-17 Score=105.56 Aligned_cols=70 Identities=30% Similarity=0.599 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 029994 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 26 l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
|||+|||..+++++|+++|++||.|..+.+..+.++..+++|||+|.+.++|++|++.|++..+.+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999887888999999999999999999999999999999885
No 8
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1.4e-16 Score=117.22 Aligned_cols=81 Identities=22% Similarity=0.353 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029994 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
....++|||+||+..+++.+|+.+|..||+|..|.|-.. +.|||||||+++.+|+.|+..|++..|.|..|+|+++
T Consensus 7 ~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 7 RNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred cCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 455899999999999999999999999999999988764 4789999999999999999999999999999999999
Q ss_pred eCCCC
Q 029994 100 GTNIA 104 (184)
Q Consensus 100 ~~~~~ 104 (184)
+....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 86544
No 9
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=3.5e-17 Score=121.46 Aligned_cols=79 Identities=19% Similarity=0.346 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
...++|||+|||..+.|.+|+++|.+||.|..|.|...+ .+..||||+|+++.+|+.||..-++..++++.|+|++.+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 457899999999999999999999999999999886433 235699999999999999999999999999999999986
Q ss_pred C
Q 029994 101 T 101 (184)
Q Consensus 101 ~ 101 (184)
.
T Consensus 82 g 82 (241)
T KOG0105|consen 82 G 82 (241)
T ss_pred C
Confidence 4
No 10
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1.3e-17 Score=116.79 Aligned_cols=83 Identities=31% Similarity=0.528 Sum_probs=77.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
....+++|||+||++.++|++|.+||+++|+|..|-+-.|+ +..+.|||||+|.+.++|+.|++.+++..++.++|+|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 44568999999999999999999999999999999999999 77899999999999999999999999999999999999
Q ss_pred EeeC
Q 029994 98 IVGT 101 (184)
Q Consensus 98 ~~~~ 101 (184)
|...
T Consensus 112 ~D~G 115 (153)
T KOG0121|consen 112 WDAG 115 (153)
T ss_pred cccc
Confidence 8653
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.73 E-value=1.5e-16 Score=138.62 Aligned_cols=78 Identities=27% Similarity=0.375 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhC--CCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 20 IETGTKLYISNLDYGVSNEDIKELFSEV--GDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~--G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
....++|||+||++++++++|+++|++| |.|++|+++ ++||||+|.+.++|++||+.||+.+|.|+.|+|+
T Consensus 230 ~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 230 MAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred cccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456899999999999999999999999 999999876 4599999999999999999999999999999999
Q ss_pred EeeCCCC
Q 029994 98 IVGTNIA 104 (184)
Q Consensus 98 ~~~~~~~ 104 (184)
++++...
T Consensus 303 ~Akp~~~ 309 (578)
T TIGR01648 303 LAKPVDK 309 (578)
T ss_pred EccCCCc
Confidence 9987544
No 12
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=6e-17 Score=114.50 Aligned_cols=88 Identities=24% Similarity=0.394 Sum_probs=82.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 029994 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
|.-...++.|||.+++..++|++|.+.|..||+|++|++..|+ ++..+|||+|+|++.++|++||..+|+..|.++.|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 4556678999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEEeeCCCC
Q 029994 96 IEIVGTNIA 104 (184)
Q Consensus 96 V~~~~~~~~ 104 (184)
|.|+..+.+
T Consensus 146 VDw~Fv~gp 154 (170)
T KOG0130|consen 146 VDWCFVKGP 154 (170)
T ss_pred EEEEEecCC
Confidence 999987554
No 13
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.8e-16 Score=122.09 Aligned_cols=84 Identities=26% Similarity=0.424 Sum_probs=80.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
..+..++|.|.||+.+++|.+|.+||..||.|.+|.|.+|+ +|.++|||||.|.+.++|.+||..|||+-++.-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 45578899999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EeeCC
Q 029994 98 IVGTN 102 (184)
Q Consensus 98 ~~~~~ 102 (184)
|+++.
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99874
No 14
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.69 E-value=2.8e-16 Score=118.41 Aligned_cols=90 Identities=26% Similarity=0.427 Sum_probs=84.8
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 029994 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
..|+..+.-++|.|-||.+-++.++|..+|++||.|-.|.|..|+ +..++|||||-|.+..+|+.|+++|++..|+|+.
T Consensus 5 ~~PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRe 84 (256)
T KOG4207|consen 5 RPPPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRE 84 (256)
T ss_pred CCCCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccce
Confidence 447888888999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEEEeeCCCC
Q 029994 94 MKIEIVGTNIA 104 (184)
Q Consensus 94 i~V~~~~~~~~ 104 (184)
|+|++++-...
T Consensus 85 lrVq~arygr~ 95 (256)
T KOG4207|consen 85 LRVQMARYGRP 95 (256)
T ss_pred eeehhhhcCCC
Confidence 99999986544
No 15
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=2.8e-15 Score=118.39 Aligned_cols=90 Identities=23% Similarity=0.439 Sum_probs=83.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 029994 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
...++-++|||.-|++.++|..|+..|+.||+|+.|.|+.++ +++++|||||+|+++.++..|.+..++..|+++.|.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 344778999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCC
Q 029994 97 EIVGTNIATRT 107 (184)
Q Consensus 97 ~~~~~~~~~~~ 107 (184)
.+-........
T Consensus 176 DvERgRTvkgW 186 (335)
T KOG0113|consen 176 DVERGRTVKGW 186 (335)
T ss_pred Eeccccccccc
Confidence 99887666544
No 16
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=4e-16 Score=124.58 Aligned_cols=91 Identities=21% Similarity=0.391 Sum_probs=81.6
Q ss_pred CCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 029994 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
.+...+..+..++|||+|||+...|-||+.+|.+||+|..|+|+.+..| +|||+||+|++.++|++|-++||+..+.|+
T Consensus 86 ~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGR 164 (376)
T KOG0125|consen 86 PSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGR 164 (376)
T ss_pred CCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeece
Confidence 4455667777899999999999999999999999999999999988643 489999999999999999999999999999
Q ss_pred eEEEEEeeCCCC
Q 029994 93 PMKIEIVGTNIA 104 (184)
Q Consensus 93 ~i~V~~~~~~~~ 104 (184)
+|.|..+.....
T Consensus 165 kIEVn~ATarV~ 176 (376)
T KOG0125|consen 165 KIEVNNATARVH 176 (376)
T ss_pred EEEEeccchhhc
Confidence 999998876543
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.67 E-value=6.8e-16 Score=99.13 Aligned_cols=70 Identities=31% Similarity=0.581 Sum_probs=64.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 029994 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 26 l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
|||+|||+++++++|.++|+.||.|..+.+..++.+.++++|||+|.+.++|++|++.+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999988788999999999999999999999999999999874
No 18
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=2e-15 Score=124.73 Aligned_cols=93 Identities=22% Similarity=0.416 Sum_probs=83.8
Q ss_pred CCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCc
Q 029994 10 PVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQ 88 (184)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~ 88 (184)
||.+|..+.+ .-+|-|||+.||.++.|++|.-||++.|+|-.++|++|+ +|.++|||||+|.+.++|++||+.||+++
T Consensus 71 PpP~weg~~p-~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~E 149 (506)
T KOG0117|consen 71 PPPGWEGPPP-PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYE 149 (506)
T ss_pred CCCcccCCCC-CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcc
Confidence 4444666555 669999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred cC-CceEEEEEeeCCC
Q 029994 89 LD-GKPMKIEIVGTNI 103 (184)
Q Consensus 89 ~~-g~~i~V~~~~~~~ 103 (184)
|. |+.|.|+++...-
T Consensus 150 ir~GK~igvc~Svan~ 165 (506)
T KOG0117|consen 150 IRPGKLLGVCVSVANC 165 (506)
T ss_pred ccCCCEeEEEEeeecc
Confidence 96 8999999887543
No 19
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=1e-15 Score=117.32 Aligned_cols=82 Identities=24% Similarity=0.418 Sum_probs=75.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
.+..-++|||++|+|++..++|+++|++||+|.+..|+.|+ +++++||+||+|.+.+.|.+|++. .+..|+|++..+.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 45567899999999999999999999999999999999999 999999999999999999999964 6688999999999
Q ss_pred EeeC
Q 029994 98 IVGT 101 (184)
Q Consensus 98 ~~~~ 101 (184)
++.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 8865
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.64 E-value=2.1e-15 Score=118.74 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=71.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCC
Q 029994 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTN 102 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~ 102 (184)
.++|||+|||+.++|++|+++|+.||.|..|.|+.++. .++||||+|.++++|+.||. |++..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999988763 46899999999999999994 9999999999999998754
Q ss_pred C
Q 029994 103 I 103 (184)
Q Consensus 103 ~ 103 (184)
.
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 3
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.63 E-value=2.6e-15 Score=131.32 Aligned_cols=83 Identities=18% Similarity=0.318 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
...++|||+|||.++++++|+++|+.||.|..|+|..++ +++++|||||+|.+.++|.+||+.||+.+|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 346899999999999999999999999999999999998 7889999999999999999999999999999999999998
Q ss_pred eCCC
Q 029994 100 GTNI 103 (184)
Q Consensus 100 ~~~~ 103 (184)
.++.
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 8644
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.62 E-value=2.5e-15 Score=131.39 Aligned_cols=82 Identities=23% Similarity=0.459 Sum_probs=77.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 029994 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
......++|||+|||+.+++++|+++|.+||.|..|+|+.++ +++++|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 102 ~a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV 181 (612)
T TIGR01645 102 QALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKV 181 (612)
T ss_pred hhhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeee
Confidence 445567999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEe
Q 029994 97 EIV 99 (184)
Q Consensus 97 ~~~ 99 (184)
...
T Consensus 182 ~rp 184 (612)
T TIGR01645 182 GRP 184 (612)
T ss_pred ccc
Confidence 854
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.61 E-value=3.6e-15 Score=130.00 Aligned_cols=78 Identities=22% Similarity=0.434 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CceEEEE
Q 029994 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLD-GKPMKIE 97 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~-g~~i~V~ 97 (184)
....++|||+|||++++|++|+++|++||.|..|+|++|.++++++||||+|.+.++|++||+.||+.+|. ++.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 44579999999999999999999999999999999999999999999999999999999999999998885 5665554
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.60 E-value=5.3e-15 Score=129.98 Aligned_cols=78 Identities=29% Similarity=0.445 Sum_probs=74.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 029994 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
.+|||+|||.++||++|+++|++||.|..|+|+++. +++++|||||+|.+.++|++||+.|++..|.|+.|+|.++..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 379999999999999999999999999999999998 799999999999999999999999999999999999998753
No 25
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.60 E-value=1.5e-14 Score=119.54 Aligned_cols=82 Identities=21% Similarity=0.474 Sum_probs=76.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHh-hCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 029994 23 GTKLYISNLDYGVSNEDIKELFS-EVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~-~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
...+||+|||+++.|++|++||. +.|+|++|++..|.++++++||.|||+++|.+++|+++||.+++.|++|.|.....
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 35599999999999999999996 78999999999999999999999999999999999999999999999999987765
Q ss_pred CCC
Q 029994 102 NIA 104 (184)
Q Consensus 102 ~~~ 104 (184)
...
T Consensus 124 ~q~ 126 (608)
T KOG4212|consen 124 EQR 126 (608)
T ss_pred hhh
Confidence 443
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.60 E-value=1.2e-14 Score=126.24 Aligned_cols=83 Identities=25% Similarity=0.411 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 029994 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
....++|||+|||+.+++++|+++|++||.|..+.|+.+. ++.++|||||+|.+.++|+.||+.||+..|.++.|.|.+
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred eeCC
Q 029994 99 VGTN 102 (184)
Q Consensus 99 ~~~~ 102 (184)
+...
T Consensus 372 a~~~ 375 (509)
T TIGR01642 372 ACVG 375 (509)
T ss_pred CccC
Confidence 8653
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.59 E-value=1.2e-14 Score=124.64 Aligned_cols=81 Identities=27% Similarity=0.589 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029994 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
..++|||+|||..+++++|+++|++||.|..|.|+.+. ++++++||||+|.+.++|++|++.||+..|.|+.|+|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 37899999999999999999999999999999999998 77999999999999999999999999999999999999987
Q ss_pred CC
Q 029994 101 TN 102 (184)
Q Consensus 101 ~~ 102 (184)
..
T Consensus 265 ~~ 266 (457)
T TIGR01622 265 DS 266 (457)
T ss_pred CC
Confidence 43
No 28
>PLN03213 repressor of silencing 3; Provisional
Probab=99.59 E-value=5.8e-15 Score=123.62 Aligned_cols=79 Identities=19% Similarity=0.347 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCH--HHHHHHHHHhCCCccCCceEEEEE
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR--ADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~--e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
....+|||+||++.+++++|+.+|+.||.|..|.|++. ++ +|||||+|.+. .++.+||..||+..+.|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 44689999999999999999999999999999999933 55 89999999987 789999999999999999999999
Q ss_pred eeCC
Q 029994 99 VGTN 102 (184)
Q Consensus 99 ~~~~ 102 (184)
+++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8874
No 29
>smart00362 RRM_2 RNA recognition motif.
Probab=99.59 E-value=1.4e-14 Score=91.83 Aligned_cols=72 Identities=39% Similarity=0.664 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 25 ~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
+|||+|||..+++++|+++|.+||.|..+.+..++ +.++++|||+|.+.++|++|++.+++..+.++.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 6778999999999999999999999999999988863
No 30
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.59 E-value=1.1e-14 Score=128.11 Aligned_cols=84 Identities=32% Similarity=0.539 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029994 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
....++|||+||++.+++++|+++|++||.|..|+|+.+.++.++|||||+|.+.++|++||..||+..|.|++|.|.++
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 44578899999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred eCCC
Q 029994 100 GTNI 103 (184)
Q Consensus 100 ~~~~ 103 (184)
..+.
T Consensus 362 ~~k~ 365 (562)
T TIGR01628 362 QRKE 365 (562)
T ss_pred cCcH
Confidence 8643
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.58 E-value=2.3e-14 Score=111.31 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=70.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 029994 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
.+++|||+||++.+||++|+++|+.||+|..|+|+.+. ...+||||+|.++++++.|+ .|++..|.++.|.|..+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 46899999999999999999999999999999999874 44579999999999999999 6999999999999988764
No 32
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.56 E-value=1e-14 Score=107.97 Aligned_cols=85 Identities=29% Similarity=0.435 Sum_probs=79.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 029994 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
.+.+...+|||+||+..++++.|+++|-+.|+|..++|..++ +...+|||||+|.++|+|+-||+.||...|.|++|+|
T Consensus 4 ~~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 4 IERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred cccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 345678999999999999999999999999999999999999 8889999999999999999999999999999999999
Q ss_pred EEeeCC
Q 029994 97 EIVGTN 102 (184)
Q Consensus 97 ~~~~~~ 102 (184)
..+...
T Consensus 84 ~kas~~ 89 (203)
T KOG0131|consen 84 NKASAH 89 (203)
T ss_pred Eecccc
Confidence 998843
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.55 E-value=3.9e-14 Score=121.46 Aligned_cols=80 Identities=25% Similarity=0.403 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
...++|||+|||..+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||. |++..|.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 347899999999999999999999999999999999998 88999999999999999999995 8999999999999876
Q ss_pred eC
Q 029994 100 GT 101 (184)
Q Consensus 100 ~~ 101 (184)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 53
No 34
>smart00360 RRM RNA recognition motif.
Probab=99.55 E-value=4.8e-14 Score=88.95 Aligned_cols=70 Identities=36% Similarity=0.644 Sum_probs=65.5
Q ss_pred EcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 28 ISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 28 V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
|+|||..+++++|+++|.+||.|..+.+..++ +++++++|||+|.+.++|..|++.+++..+.++.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999887 68899999999999999999999999999999998873
No 35
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.55 E-value=7.1e-14 Score=120.84 Aligned_cols=80 Identities=25% Similarity=0.323 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 029994 20 IETGTKLYISNLDY-GVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 20 ~~~~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
..++++|||+||++ .+++++|+++|++||.|.+|+|+.++ ++||||+|.+.++|+.||..||+..|.|++|+|.+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 45789999999998 69999999999999999999998764 58999999999999999999999999999999999
Q ss_pred eeCCC
Q 029994 99 VGTNI 103 (184)
Q Consensus 99 ~~~~~ 103 (184)
++...
T Consensus 348 s~~~~ 352 (481)
T TIGR01649 348 SKQQN 352 (481)
T ss_pred ccccc
Confidence 87643
No 36
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=5.5e-14 Score=116.32 Aligned_cols=81 Identities=31% Similarity=0.466 Sum_probs=74.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
.....-+.|||.||+.+|||+.|+++|++||.|++|+.++| ||||.|.+.++|.+|++.+|+.+|+|..|.|.
T Consensus 254 d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvt 326 (506)
T KOG0117|consen 254 DTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVT 326 (506)
T ss_pred hhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEE
Confidence 35556789999999999999999999999999999998754 99999999999999999999999999999999
Q ss_pred EeeCCCCC
Q 029994 98 IVGTNIAT 105 (184)
Q Consensus 98 ~~~~~~~~ 105 (184)
++++....
T Consensus 327 LAKP~~k~ 334 (506)
T KOG0117|consen 327 LAKPVDKK 334 (506)
T ss_pred ecCChhhh
Confidence 99986543
No 37
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.53 E-value=1.4e-13 Score=87.58 Aligned_cols=74 Identities=35% Similarity=0.613 Sum_probs=68.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 029994 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 25 ~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
+|+|+|||..+++++|+++|..+|.|..+.+..+....+.++|||+|.+.++|+.|++.+++..+.++.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999887557789999999999999999999999999999998864
No 38
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=8.1e-14 Score=108.59 Aligned_cols=86 Identities=16% Similarity=0.263 Sum_probs=80.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 029994 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
|.....+++|||-||.+++.|..|+++|..||.|..|+|++|- +.+++||+||.+.+.++|..||..||+..+.++.|.
T Consensus 272 p~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ 351 (360)
T KOG0145|consen 272 PGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 351 (360)
T ss_pred CCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence 4555568999999999999999999999999999999999999 799999999999999999999999999999999999
Q ss_pred EEEeeCC
Q 029994 96 IEIVGTN 102 (184)
Q Consensus 96 V~~~~~~ 102 (184)
|.+...+
T Consensus 352 VsFKtnk 358 (360)
T KOG0145|consen 352 VSFKTNK 358 (360)
T ss_pred EEEecCC
Confidence 9998654
No 39
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=6.2e-14 Score=94.95 Aligned_cols=83 Identities=25% Similarity=0.421 Sum_probs=74.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
-+.+....|||.|||+.+|.+++.++|.+||.|..|+|-..+ ..+|.|||.|++..+|++|+..|++..+.++.+.|-
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 445668899999999999999999999999999999987655 237899999999999999999999999999999998
Q ss_pred EeeCC
Q 029994 98 IVGTN 102 (184)
Q Consensus 98 ~~~~~ 102 (184)
+..+.
T Consensus 91 yyq~~ 95 (124)
T KOG0114|consen 91 YYQPE 95 (124)
T ss_pred ecCHH
Confidence 87653
No 40
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=4.6e-14 Score=109.92 Aligned_cols=86 Identities=24% Similarity=0.452 Sum_probs=80.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
..+..+.|.|--||.++|+++|+.+|...|+|+.|++++|+ +|++.||+||.|.++++|++||..||+..+..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 35567889999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EeeCCCC
Q 029994 98 IVGTNIA 104 (184)
Q Consensus 98 ~~~~~~~ 104 (184)
++++...
T Consensus 117 yARPSs~ 123 (360)
T KOG0145|consen 117 YARPSSD 123 (360)
T ss_pred eccCChh
Confidence 9998643
No 41
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=9.9e-15 Score=111.12 Aligned_cols=84 Identities=24% Similarity=0.406 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 029994 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
.+...+|||++|..+|+|..|...|-.||.|..|.|..|. ++++++|+||+|...|+|.+||..||..+|.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 4557899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred eeCCC
Q 029994 99 VGTNI 103 (184)
Q Consensus 99 ~~~~~ 103 (184)
+++..
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 99854
No 42
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.51 E-value=1e-13 Score=108.91 Aligned_cols=79 Identities=33% Similarity=0.656 Sum_probs=76.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 029994 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
.++|||+|||..+++++|.++|.+||.|..|.+..++ ++++++||||+|.+.++|..|++.+++..|.++.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999997 899999999999999999999999999999999999999764
No 43
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.51 E-value=4.2e-13 Score=112.76 Aligned_cols=85 Identities=16% Similarity=0.345 Sum_probs=71.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
+......|||.|||.++++.+|+++|.+||.|+...|..-. .++..+|+||+|.+.++++.||++ +-..|++++|.|+
T Consensus 284 ~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 284 PRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred eeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 33445669999999999999999999999999988876544 445448999999999999999986 5788999999999
Q ss_pred EeeCCCC
Q 029994 98 IVGTNIA 104 (184)
Q Consensus 98 ~~~~~~~ 104 (184)
..++...
T Consensus 363 ek~~~~~ 369 (419)
T KOG0116|consen 363 EKRPGFR 369 (419)
T ss_pred ecccccc
Confidence 9876443
No 44
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=2.4e-15 Score=111.31 Aligned_cols=82 Identities=26% Similarity=0.527 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 029994 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
...+.-|||+|||+..||.||-.+|++||+|..|.+++|+ ||+++||||+.|++-.+...|+..|||..|.|+.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 3457889999999999999999999999999999999999 999999999999999999999999999999999999987
Q ss_pred eeC
Q 029994 99 VGT 101 (184)
Q Consensus 99 ~~~ 101 (184)
...
T Consensus 112 v~~ 114 (219)
T KOG0126|consen 112 VSN 114 (219)
T ss_pred ccc
Confidence 554
No 45
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.4e-13 Score=107.66 Aligned_cols=81 Identities=20% Similarity=0.371 Sum_probs=74.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
.....|+|||+||+..++|++|++.|+.||+|.+|+|..+ +||+||.|+++|+|..||..+|+.+|.|+.+++.|
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 4456899999999999999999999999999999999866 67999999999999999999999999999999999
Q ss_pred eeCCCC
Q 029994 99 VGTNIA 104 (184)
Q Consensus 99 ~~~~~~ 104 (184)
-+....
T Consensus 235 GKe~~~ 240 (321)
T KOG0148|consen 235 GKEGDD 240 (321)
T ss_pred cccCCC
Confidence 886544
No 46
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.49 E-value=8.4e-14 Score=117.57 Aligned_cols=81 Identities=22% Similarity=0.528 Sum_probs=78.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCC
Q 029994 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTN 102 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~ 102 (184)
+.|||+|||++++|++|..+|+..|.|..++++.|+ +|+++||+|++|.+.++|+.|++.||+.++.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999999999998865
Q ss_pred CC
Q 029994 103 IA 104 (184)
Q Consensus 103 ~~ 104 (184)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.48 E-value=2.2e-13 Score=117.85 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHh--CCCccCCceEEEEEe
Q 029994 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRY--NNVQLDGKPMKIEIV 99 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l--~g~~~~g~~i~V~~~ 99 (184)
++++|||+|||+.++|++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.| ++..|.|+.|.|.++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 5789999999999999999999999999999998854 569999999999999999875 678999999999998
Q ss_pred eC
Q 029994 100 GT 101 (184)
Q Consensus 100 ~~ 101 (184)
..
T Consensus 76 ~~ 77 (481)
T TIGR01649 76 TS 77 (481)
T ss_pred CC
Confidence 54
No 48
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.6e-13 Score=106.20 Aligned_cols=84 Identities=20% Similarity=0.380 Sum_probs=78.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 029994 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
...-..|||+.|...++-++|++.|.+||+|..++|++|. ++++|||+||.|.+.++|+.||..|||..|..+.|+-.|
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 3336789999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred eeCCC
Q 029994 99 VGTNI 103 (184)
Q Consensus 99 ~~~~~ 103 (184)
+..+.
T Consensus 139 ATRKp 143 (321)
T KOG0148|consen 139 ATRKP 143 (321)
T ss_pred cccCc
Confidence 87654
No 49
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=7.6e-14 Score=115.12 Aligned_cols=86 Identities=28% Similarity=0.476 Sum_probs=78.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCC-CccCC--ceEEEE
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNN-VQLDG--KPMKIE 97 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g-~~~~g--~~i~V~ 97 (184)
...++|||+-|+..+||.+++++|++||.|+.|.|.++..+.++||+||.|.+.|.|..||+.||+ .++.| .+|.|.
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 347899999999999999999999999999999999999999999999999999999999999999 55655 699999
Q ss_pred EeeCCCCCC
Q 029994 98 IVGTNIATR 106 (184)
Q Consensus 98 ~~~~~~~~~ 106 (184)
|+.+..+..
T Consensus 202 FADtqkdk~ 210 (510)
T KOG0144|consen 202 FADTQKDKD 210 (510)
T ss_pred ecccCCCch
Confidence 998876543
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.8e-13 Score=112.92 Aligned_cols=85 Identities=26% Similarity=0.488 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCC-CccCC--ceEEE
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNN-VQLDG--KPMKI 96 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g-~~~~g--~~i~V 96 (184)
....++||+-||.+++|.||+++|++||.|.+|.|++|+ ++.++|||||.|.+.++|.+||.+||+ +.|.| ++|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 456789999999999999999999999999999999999 899999999999999999999999998 55655 78888
Q ss_pred EEeeCCCCC
Q 029994 97 EIVGTNIAT 105 (184)
Q Consensus 97 ~~~~~~~~~ 105 (184)
.++..+...
T Consensus 112 k~Ad~E~er 120 (510)
T KOG0144|consen 112 KYADGERER 120 (510)
T ss_pred cccchhhhc
Confidence 888765443
No 51
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=3.1e-13 Score=105.71 Aligned_cols=88 Identities=23% Similarity=0.331 Sum_probs=82.6
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 029994 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
......+|.|||-.||.+..+.+|-++|-.||.|.+.++..|+ ++.+|+|+||.|+++.+++.||..|||..|.-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 3455679999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEEeeCCCC
Q 029994 96 IEIVGTNIA 104 (184)
Q Consensus 96 V~~~~~~~~ 104 (184)
|.+.+++..
T Consensus 359 VQLKRPkda 367 (371)
T KOG0146|consen 359 VQLKRPKDA 367 (371)
T ss_pred hhhcCcccc
Confidence 999987654
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=9.9e-13 Score=111.35 Aligned_cols=85 Identities=25% Similarity=0.406 Sum_probs=78.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
.+.++|.|.||||.|...+|+.+|+.||.|..|.|.....++-+|||||.|.+..+|..||+.||+..|.|++|-|.|+.
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 44899999999999999999999999999999999977777777999999999999999999999999999999999998
Q ss_pred CCCCC
Q 029994 101 TNIAT 105 (184)
Q Consensus 101 ~~~~~ 105 (184)
++...
T Consensus 195 ~Kd~y 199 (678)
T KOG0127|consen 195 DKDTY 199 (678)
T ss_pred ccccc
Confidence 76543
No 53
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.40 E-value=2e-12 Score=79.53 Aligned_cols=56 Identities=30% Similarity=0.578 Sum_probs=50.5
Q ss_pred HHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029994 40 IKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 40 L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
|.++|++||+|..|.+..++ +++|||+|.+.++|+.|++.||+..+.|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999987554 479999999999999999999999999999999985
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.6e-12 Score=110.13 Aligned_cols=88 Identities=31% Similarity=0.514 Sum_probs=78.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHh-----CC-Ccc
Q 029994 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY-----NN-VQL 89 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l-----~g-~~~ 89 (184)
+...+.+.+|||.|||+.+||+.|.++|++||+|..+.|+.++ ++.++|+|||.|.+..+|+.||+.- .+ ..|
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 4555667999999999999999999999999999999999999 9999999999999999999999865 23 678
Q ss_pred CCceEEEEEeeCCCC
Q 029994 90 DGKPMKIEIVGTNIA 104 (184)
Q Consensus 90 ~g~~i~V~~~~~~~~ 104 (184)
.|+.|.|.++-+...
T Consensus 366 ~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 366 DGRLLKVTLAVTRKE 380 (678)
T ss_pred eccEEeeeeccchHH
Confidence 899999999876543
No 55
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=7.8e-13 Score=106.97 Aligned_cols=84 Identities=19% Similarity=0.348 Sum_probs=78.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
-.+|...|||..|.+.++.++|+-+|+.||+|..|.|++++ ++.+..||||+|++.+++++|.-+|++..|+++.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34567899999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EeeCC
Q 029994 98 IVGTN 102 (184)
Q Consensus 98 ~~~~~ 102 (184)
++..-
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 87653
No 56
>smart00361 RRM_1 RNA recognition motif.
Probab=99.37 E-value=3.4e-12 Score=82.19 Aligned_cols=61 Identities=28% Similarity=0.502 Sum_probs=54.4
Q ss_pred HHHHHHHHh----hCCCeEEEE-EEeCC-C--CCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 37 NEDIKELFS----EVGDLKRYS-IHYDR-S--GRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 37 e~~L~~~f~----~~G~i~~v~-i~~~~-~--~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
+++|+++|+ +||.|.+|. |+.++ + +.++||+||+|.+.++|.+|++.||+..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 66666 5 8899999999999999999999999999999998763
No 57
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.35 E-value=1.2e-12 Score=103.30 Aligned_cols=72 Identities=22% Similarity=0.389 Sum_probs=68.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCC
Q 029994 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTN 102 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~ 102 (184)
.+|||+|||..+++.+|+.+|++||+|.+|.|+ |.|+||..++...+..||..||+.+|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 479999999999999999999999999999999 449999999999999999999999999999999998876
No 58
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=9.6e-13 Score=106.89 Aligned_cols=76 Identities=24% Similarity=0.482 Sum_probs=73.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 029994 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
-|+|||+.|.+++.|+.|+..|..||+|++|.+..|. ++++++||||||+-+|.|+.|++.||+..+.|+.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 4899999999999999999999999999999999999 999999999999999999999999999999999999974
No 59
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.32 E-value=2.5e-12 Score=108.95 Aligned_cols=81 Identities=26% Similarity=0.594 Sum_probs=76.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCCCC
Q 029994 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIA 104 (184)
Q Consensus 26 l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~~~ 104 (184)
|||+||++++++++|+.+|+.||.|..|.+..|. +|.++||+||+|.+.++|.+|++.||+.+|-|+.|+|........
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 9999999999999999999999999999999998 999999999999999999999999999999999999998877655
Q ss_pred CC
Q 029994 105 TR 106 (184)
Q Consensus 105 ~~ 106 (184)
..
T Consensus 361 ~~ 362 (549)
T KOG0147|consen 361 TK 362 (549)
T ss_pred cc
Confidence 44
No 60
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=7.9e-12 Score=104.41 Aligned_cols=78 Identities=27% Similarity=0.484 Sum_probs=73.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCCCCC
Q 029994 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIAT 105 (184)
Q Consensus 26 l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~~~~ 105 (184)
|||.||++.++..+|.++|+.||+|.+|++..+..+ +++| ||+|+++++|++||+.+|+..+.+++|.|.+...+...
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999999999999999999999999999999999987 8999 99999999999999999999999999999887765543
No 61
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.29 E-value=1.9e-11 Score=106.22 Aligned_cols=77 Identities=16% Similarity=0.275 Sum_probs=62.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhC------------CCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029994 18 SAIETGTKLYISNLDYGVSNEDIKELFSEV------------GDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~------------G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~ 85 (184)
.......+|||+|||+.+++++|+++|.++ +.|..+.+. +.++||||+|.+.++|+.|| .|+
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----~~kg~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----KEKNFAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----CCCCEEEEEeCCHHHHhhhh-cCC
Confidence 334457899999999999999999999975 234444433 34789999999999999999 599
Q ss_pred CCccCCceEEEEEee
Q 029994 86 NVQLDGKPMKIEIVG 100 (184)
Q Consensus 86 g~~~~g~~i~V~~~~ 100 (184)
+..|.|..|+|....
T Consensus 244 g~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 244 SIIYSNVFLKIRRPH 258 (509)
T ss_pred CeEeeCceeEecCcc
Confidence 999999999987544
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.27 E-value=1.5e-11 Score=91.26 Aligned_cols=91 Identities=23% Similarity=0.331 Sum_probs=81.9
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEE-EEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 029994 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKR-YSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~-v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
........+..|||+||.++++|..|.++|+.||.|.. -+|+++. ++.+++|+||.|.+.+.+.+||..+|+..+..+
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr 167 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNR 167 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCC
Confidence 55667778899999999999999999999999998854 5788888 799999999999999999999999999999999
Q ss_pred eEEEEEeeCCCCC
Q 029994 93 PMKIEIVGTNIAT 105 (184)
Q Consensus 93 ~i~V~~~~~~~~~ 105 (184)
+|+|+++..+...
T Consensus 168 ~itv~ya~k~~~k 180 (203)
T KOG0131|consen 168 PITVSYAFKKDTK 180 (203)
T ss_pred ceEEEEEEecCCC
Confidence 9999999875543
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.24 E-value=1.2e-11 Score=97.73 Aligned_cols=80 Identities=26% Similarity=0.448 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029994 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
...+++|+|+||.+.++-++|+..|.+||+|.+++|+ ++|+||.|.-.++|..||+.|++.+|+|++++|.++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-------cceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 4568999999999999999999999999999999999 459999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 029994 100 GTNIATR 106 (184)
Q Consensus 100 ~~~~~~~ 106 (184)
.......
T Consensus 148 tsrlrta 154 (346)
T KOG0109|consen 148 TSRLRTA 154 (346)
T ss_pred ccccccC
Confidence 8765443
No 64
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.21 E-value=7.2e-11 Score=90.44 Aligned_cols=85 Identities=27% Similarity=0.489 Sum_probs=74.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHH----HHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 029994 18 SAIETGTKLYISNLDYGVSNEDIKE----LFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~----~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
...++..+|||.||+..+..++|+. +|++||.|..|.. .++.+.+|-|||.|.+.+.|..|+..|+|..|.|++
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a--~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISA--FKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEe--cCCCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 4556677999999999999988877 9999999977654 456788999999999999999999999999999999
Q ss_pred EEEEEeeCCCC
Q 029994 94 MKIEIVGTNIA 104 (184)
Q Consensus 94 i~V~~~~~~~~ 104 (184)
++|.+++.+..
T Consensus 82 mriqyA~s~sd 92 (221)
T KOG4206|consen 82 MRIQYAKSDSD 92 (221)
T ss_pred hheecccCccc
Confidence 99999987654
No 65
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.18 E-value=6.7e-11 Score=100.99 Aligned_cols=82 Identities=22% Similarity=0.348 Sum_probs=76.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 029994 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
+..|||.+|...+...+|+.||++||+|.-.+|+.+. +.-.++|+||++.+.++|.+||+.||..+|.|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 5789999999999999999999999999999999887 666788999999999999999999999999999999999887
Q ss_pred CCC
Q 029994 102 NIA 104 (184)
Q Consensus 102 ~~~ 104 (184)
.+.
T Consensus 485 Ep~ 487 (940)
T KOG4661|consen 485 EPG 487 (940)
T ss_pred Ccc
Confidence 654
No 66
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.17 E-value=1.5e-10 Score=87.50 Aligned_cols=86 Identities=21% Similarity=0.348 Sum_probs=78.6
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhC-CCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 029994 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEV-GDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~-G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
.+.......+||..+|..+.+.+|..+|.++ |.|..+.+.+++ ||.+++||||+|++++.|+-|.+.||+..|.++-|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 4566677889999999999999999999988 788888887888 99999999999999999999999999999999999
Q ss_pred EEEEeeCC
Q 029994 95 KIEIVGTN 102 (184)
Q Consensus 95 ~V~~~~~~ 102 (184)
.|.+..+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99998765
No 67
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=1.6e-10 Score=90.60 Aligned_cols=84 Identities=25% Similarity=0.456 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCC-CccCC--ceEEEEE
Q 029994 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNN-VQLDG--KPMKIEI 98 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g-~~~~g--~~i~V~~ 98 (184)
..++|||+-|...-.|+|++.+|..||.|.+|.+.+...+.+|||+||.|.+..+|+.||..||+ .++-| ..|.|.+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 56899999999999999999999999999999999999999999999999999999999999999 45555 6899999
Q ss_pred eeCCCCC
Q 029994 99 VGTNIAT 105 (184)
Q Consensus 99 ~~~~~~~ 105 (184)
+.+..+.
T Consensus 98 ADTdkER 104 (371)
T KOG0146|consen 98 ADTDKER 104 (371)
T ss_pred ccchHHH
Confidence 8876543
No 68
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=2.3e-10 Score=92.46 Aligned_cols=82 Identities=24% Similarity=0.329 Sum_probs=72.3
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhC-CCccCCce
Q 029994 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN-NVQLDGKP 93 (184)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~-g~~~~g~~ 93 (184)
--|+.+...++|||++|-..++|.+|+++|.+||+|+.|.+... +++|||+|.+.+.|+.|.+++- ...|+|.+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 34677788899999999989999999999999999999988754 4599999999999999887554 48889999
Q ss_pred EEEEEeeC
Q 029994 94 MKIEIVGT 101 (184)
Q Consensus 94 i~V~~~~~ 101 (184)
|.|.|.++
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999887
No 69
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.12 E-value=2.1e-10 Score=100.67 Aligned_cols=79 Identities=24% Similarity=0.403 Sum_probs=72.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCC
Q 029994 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTN 102 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~ 102 (184)
+++|||+.|+..++|.+|..+|+.||+|.+|.++.. ++||||.+....+|.+|+.+|.+..+..+.|+|.|+...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 689999999999999999999999999999988754 679999999999999999999999999999999999876
Q ss_pred CCCC
Q 029994 103 IATR 106 (184)
Q Consensus 103 ~~~~ 106 (184)
....
T Consensus 496 G~ks 499 (894)
T KOG0132|consen 496 GPKS 499 (894)
T ss_pred Ccch
Confidence 5443
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.11 E-value=2.4e-10 Score=94.96 Aligned_cols=79 Identities=27% Similarity=0.431 Sum_probs=70.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 029994 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
.....+.|+|+|.|||+++||+.|++-|.+||.|.++.|+ ..+++++ .|.|.++++|+.|+..|++..+.|+.|+|
T Consensus 530 ~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim--e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V 605 (608)
T KOG4212|consen 530 VGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM--ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKV 605 (608)
T ss_pred ccccccccEEEEecCCccccHHHHHHHHHhccceehhhhh--ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeee
Confidence 4566778999999999999999999999999999999884 3456665 89999999999999999999999999999
Q ss_pred EEe
Q 029994 97 EIV 99 (184)
Q Consensus 97 ~~~ 99 (184)
.+.
T Consensus 606 ~y~ 608 (608)
T KOG4212|consen 606 TYF 608 (608)
T ss_pred eeC
Confidence 873
No 71
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.11 E-value=2.5e-10 Score=92.93 Aligned_cols=102 Identities=16% Similarity=0.285 Sum_probs=88.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHH
Q 029994 5 QVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKR 83 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~ 83 (184)
+..+++.........+.....|||++||..+++++|++.|.+||.|..+.++.|. +.++++|+||+|.+++.+.+++.
T Consensus 79 ~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~- 157 (311)
T KOG4205|consen 79 PKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL- 157 (311)
T ss_pred ceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-
Confidence 3345555556666666678899999999999999999999999999999999998 88999999999999999999985
Q ss_pred hCCCccCCceEEEEEeeCCCCCCC
Q 029994 84 YNNVQLDGKPMKIEIVGTNIATRT 107 (184)
Q Consensus 84 l~g~~~~g~~i~V~~~~~~~~~~~ 107 (184)
..-+.|.++.+.|..+.++.....
T Consensus 158 ~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 158 QKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred cceeeecCceeeEeeccchhhccc
Confidence 477999999999999998776554
No 72
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=3e-10 Score=92.57 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=75.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 029994 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
-.+|||..++++.+|+||+.+|+.||+|.+|.+-+.. ...++||+||||.+..+...||..||-..+.|+.|+|-.+-+
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 4799999999999999999999999999999999999 567999999999999999999999999999999999987665
Q ss_pred CC
Q 029994 102 NI 103 (184)
Q Consensus 102 ~~ 103 (184)
+.
T Consensus 290 PP 291 (544)
T KOG0124|consen 290 PP 291 (544)
T ss_pred CC
Confidence 44
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=4.5e-10 Score=97.86 Aligned_cols=77 Identities=30% Similarity=0.500 Sum_probs=70.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCC----cceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029994 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGR----SKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~----~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
++|||.||++.++.++|..+|..+|.|..+.|...+... +.||+||+|.++++|+.|++.|+++.|+|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 449999999999999999999999999999887766432 5599999999999999999999999999999999999
Q ss_pred e
Q 029994 100 G 100 (184)
Q Consensus 100 ~ 100 (184)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 74
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=6.9e-10 Score=92.83 Aligned_cols=75 Identities=28% Similarity=0.340 Sum_probs=70.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCCC
Q 029994 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 103 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~~ 103 (184)
.+|||+ +.|||.+|.++|+.+|+|..|++++|. . +.|||||.|.++++|++||..||...|.|++|+|.|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 468998 889999999999999999999999998 5 99999999999999999999999999999999999987533
No 75
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.05 E-value=8.6e-10 Score=89.15 Aligned_cols=82 Identities=24% Similarity=0.425 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeE--------EEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 029994 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLK--------RYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDG 91 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~--------~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g 91 (184)
....+.|||+|||..+|.+++.++|++||-|. .|+|+.+..|+.+|-+.|.|...+++..||+.|+...|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 44578899999999999999999999999775 4889999999999999999999999999999999999999
Q ss_pred ceEEEEEeeC
Q 029994 92 KPMKIEIVGT 101 (184)
Q Consensus 92 ~~i~V~~~~~ 101 (184)
+.|+|+.|+-
T Consensus 211 ~~~rVerAkf 220 (382)
T KOG1548|consen 211 KKLRVERAKF 220 (382)
T ss_pred cEEEEehhhh
Confidence 9999998874
No 76
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.02 E-value=3.8e-10 Score=91.84 Aligned_cols=82 Identities=23% Similarity=0.426 Sum_probs=74.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029994 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
..++|||++|+|.++++.|++.|.+||+|..|.++.++ ++++++|+||+|.+.+.+.++|. ...+.|.++.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 68999999999999999999999999999999999999 89999999999999999888885 35688999999988877
Q ss_pred CCCC
Q 029994 101 TNIA 104 (184)
Q Consensus 101 ~~~~ 104 (184)
+...
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 6553
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=3.4e-10 Score=98.62 Aligned_cols=87 Identities=21% Similarity=0.386 Sum_probs=77.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 029994 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
+.....+.|+|.|||+..+-.+++.+|..||.|..|.|.... .+.++|||||+|-++.+|..|+..|....|.|+.|.+
T Consensus 608 ~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVL 687 (725)
T KOG0110|consen 608 SKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVL 687 (725)
T ss_pred ccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhe
Confidence 444447899999999999999999999999999999998664 5567999999999999999999999999999999999
Q ss_pred EEeeCCCC
Q 029994 97 EIVGTNIA 104 (184)
Q Consensus 97 ~~~~~~~~ 104 (184)
+|+.....
T Consensus 688 EwA~~d~~ 695 (725)
T KOG0110|consen 688 EWAKSDNT 695 (725)
T ss_pred ehhccchH
Confidence 99987543
No 78
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.99 E-value=9.2e-09 Score=78.95 Aligned_cols=86 Identities=23% Similarity=0.371 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeC-C-CCCcceEEEEEecCHHHHHHHHHHhCCCccC---CceEEE
Q 029994 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-R-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLD---GKPMKI 96 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~-~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~---g~~i~V 96 (184)
.-.+|||.+||.++.-.+|..+|..|---+.+.|... + ...++-++||+|.+..+|++|+..|||..|+ ++.|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3689999999999999999999998855555555443 3 2335679999999999999999999998887 689999
Q ss_pred EEeeCCCCCCC
Q 029994 97 EIVGTNIATRT 107 (184)
Q Consensus 97 ~~~~~~~~~~~ 107 (184)
++++.......
T Consensus 113 ElAKSNtK~kr 123 (284)
T KOG1457|consen 113 ELAKSNTKRKR 123 (284)
T ss_pred eehhcCccccc
Confidence 99987665444
No 79
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=2.4e-10 Score=87.22 Aligned_cols=83 Identities=24% Similarity=0.261 Sum_probs=75.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
..+...+|||.|+-..|+|+.|.++|-+.|+|.+|.|..++.++.+ ||||+|.++..+.-|++.+|+..+.+..|.|.+
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3345689999999999999999999999999999999988877777 999999999999999999999999999999987
Q ss_pred eeCC
Q 029994 99 VGTN 102 (184)
Q Consensus 99 ~~~~ 102 (184)
....
T Consensus 84 r~G~ 87 (267)
T KOG4454|consen 84 RCGN 87 (267)
T ss_pred ccCC
Confidence 6543
No 80
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=98.98 E-value=3.1e-09 Score=68.93 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=18.8
Q ss_pred CCCCCChhhHhHHHHHHhhHH
Q 029994 157 RNEKISAEDLDADLDKYYSEA 177 (184)
Q Consensus 157 r~~~~~~~~lD~el~~y~~~~ 177 (184)
..+++|+||||+|||+||+..
T Consensus 36 ~~~~kT~EeLDaELD~Ym~~~ 56 (74)
T PF13865_consen 36 KKPPKTAEELDAELDAYMSKT 56 (74)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 377999999999999999765
No 81
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.97 E-value=6.3e-09 Score=84.62 Aligned_cols=86 Identities=21% Similarity=0.381 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeE--------EEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLK--------RYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQL 89 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~--------~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~ 89 (184)
......+|||.+||..+++++|.++|.+++.|. .|+|.+++ |+++|+-|.|.|.+...|+.||..+++..|
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 355578999999999999999999999999885 36788888 999999999999999999999999999999
Q ss_pred CCceEEEEEeeCCCC
Q 029994 90 DGKPMKIEIVGTNIA 104 (184)
Q Consensus 90 ~g~~i~V~~~~~~~~ 104 (184)
.+.+|+|.++.....
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999999886554
No 82
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.91 E-value=4e-09 Score=82.84 Aligned_cols=85 Identities=22% Similarity=0.383 Sum_probs=78.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
...+...+||+|+.+.++.++++.+|+.||.|..|.|..++ .+++++|+||+|.+.+.++.|+. |++..|.++.|.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 44567899999999999998899999999999999999999 77899999999999999999997 99999999999999
Q ss_pred EeeCCCC
Q 029994 98 IVGTNIA 104 (184)
Q Consensus 98 ~~~~~~~ 104 (184)
+.....+
T Consensus 176 ~~r~~~p 182 (231)
T KOG4209|consen 176 LKRTNVP 182 (231)
T ss_pred eeeeecC
Confidence 9887643
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=1.6e-09 Score=83.55 Aligned_cols=71 Identities=23% Similarity=0.405 Sum_probs=65.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 029994 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
..|||++||+.+.+.+|+.||..||+|..|.+. .+|+||+|.+..+|..||..||+.+|.+..+.|+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 479999999999999999999999999998876 56999999999999999999999999998888888763
No 84
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.78 E-value=3.3e-08 Score=83.35 Aligned_cols=81 Identities=20% Similarity=0.357 Sum_probs=67.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
.......|.+.+|||++|+++|.+||+.+ .|+.+.+.+ .+++..|-|||||.+.+++++|++ .+...+..+.|.|..
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR-RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec-cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 34557788999999999999999999999 588754432 278999999999999999999996 488888999999987
Q ss_pred eeCC
Q 029994 99 VGTN 102 (184)
Q Consensus 99 ~~~~ 102 (184)
+...
T Consensus 83 ~~~~ 86 (510)
T KOG4211|consen 83 AGGA 86 (510)
T ss_pred cCCc
Confidence 7543
No 85
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.75 E-value=3.2e-08 Score=86.62 Aligned_cols=83 Identities=25% Similarity=0.332 Sum_probs=74.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCC----CCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRS----GRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~----~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
...-.+.|||+||++.++|+.|...|..||+|..|+|+..++ .....|+||-|-+..+|++|++.|++..+....+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 345579999999999999999999999999999999987762 3467799999999999999999999999999999
Q ss_pred EEEEeeC
Q 029994 95 KIEIVGT 101 (184)
Q Consensus 95 ~V~~~~~ 101 (184)
++-|.+.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999865
No 86
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=1.6e-08 Score=86.22 Aligned_cols=72 Identities=25% Similarity=0.341 Sum_probs=64.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 029994 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
..+..+|+|-|||..|++++|.++|+.||+|+.|..-.. ..+.+||+|.+..+|++|++.|+..+|.++.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 455789999999999999999999999999998665433 367899999999999999999999999999888
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.70 E-value=2.1e-08 Score=78.29 Aligned_cols=85 Identities=20% Similarity=0.335 Sum_probs=76.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
..+...+||++.|..+++.+.|...|.+|-.....++++++ +++++||+||.|.+.+++..|+..|++..++.++|++.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 44557899999999999999999999999888888899998 99999999999999999999999999999999999887
Q ss_pred EeeCCC
Q 029994 98 IVGTNI 103 (184)
Q Consensus 98 ~~~~~~ 103 (184)
.+..+.
T Consensus 266 kS~wke 271 (290)
T KOG0226|consen 266 KSEWKE 271 (290)
T ss_pred hhhHHh
Confidence 665443
No 88
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.66 E-value=3.5e-07 Score=62.26 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=66.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhh--CCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccC----CceEEE
Q 029994 24 TKLYISNLDYGVSNEDIKELFSE--VGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLD----GKPMKI 96 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~--~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~----g~~i~V 96 (184)
++|.|.|||...|.++|.+++.. .|....+.+..|- +....|||||.|.+++.|.+-.+.+++..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998864 3566777888787 7788999999999999999999999997775 467777
Q ss_pred EEeeC
Q 029994 97 EIVGT 101 (184)
Q Consensus 97 ~~~~~ 101 (184)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77764
No 89
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.64 E-value=1.6e-07 Score=77.81 Aligned_cols=79 Identities=25% Similarity=0.377 Sum_probs=71.0
Q ss_pred CCEEEEcCCCCC-CCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 029994 23 GTKLYISNLDYG-VSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 23 ~~~l~V~nLp~~-~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
.+.|.|.||... +|.+.|..+|+-||.|.+|+|..++ +.-|.|.|.+...|+.|++.|+++.|.|++|+|.+++-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 688999999654 9999999999999999999999876 24799999999999999999999999999999999986
Q ss_pred CCCC
Q 029994 102 NIAT 105 (184)
Q Consensus 102 ~~~~ 105 (184)
....
T Consensus 373 ~~vq 376 (492)
T KOG1190|consen 373 TNVQ 376 (492)
T ss_pred cccc
Confidence 5543
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.61 E-value=2.1e-07 Score=78.56 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=67.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEE-EEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKR-YSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~-v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
.+...|.+.+||+.||+++|.+||+-.-.|.. |.++.+..+++.+-|||.|++.+.|++|+.. |...|..+.|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 56789999999999999999999998754444 5567777888999999999999999999975 888899999999765
Q ss_pred e
Q 029994 100 G 100 (184)
Q Consensus 100 ~ 100 (184)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 91
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.55 E-value=2.4e-07 Score=64.26 Aligned_cols=73 Identities=26% Similarity=0.415 Sum_probs=45.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCC-----CccCCceEEEE
Q 029994 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNN-----VQLDGKPMKIE 97 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g-----~~~~g~~i~V~ 97 (184)
++.|+|.+++..++.++|+++|++|+.|..|.+....+ .|||-|.+.+.|+.|++.+.- ..|.+..+.++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~-----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT-----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S-----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC-----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46899999999999999999999999999998875432 899999999999999986653 46677777777
Q ss_pred Eee
Q 029994 98 IVG 100 (184)
Q Consensus 98 ~~~ 100 (184)
+..
T Consensus 76 vLe 78 (105)
T PF08777_consen 76 VLE 78 (105)
T ss_dssp ---
T ss_pred ECC
Confidence 644
No 92
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=1.2e-07 Score=81.38 Aligned_cols=92 Identities=22% Similarity=0.341 Sum_probs=83.1
Q ss_pred CCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 029994 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLD 90 (184)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~ 90 (184)
..+..+......+.|||++||..+++.++++++..||.++...++.+. ++-+++|||.+|.+......||..||+..+.
T Consensus 278 ~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg 357 (500)
T KOG0120|consen 278 LLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG 357 (500)
T ss_pred CcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc
Confidence 345556677778999999999999999999999999999999999888 7899999999999999999999999999999
Q ss_pred CceEEEEEeeCCC
Q 029994 91 GKPMKIEIVGTNI 103 (184)
Q Consensus 91 g~~i~V~~~~~~~ 103 (184)
+++|.|..+-...
T Consensus 358 d~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 358 DKKLVVQRAIVGA 370 (500)
T ss_pred CceeEeehhhccc
Confidence 9999999876543
No 93
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.53 E-value=1.6e-07 Score=76.38 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCC--CeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 029994 22 TGTKLYISNLDYGVSNEDIKELFSEVG--DLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G--~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
...++||+||-|++|++||.+.+...| .+..+++..++ +++++|||+|...+....++.++.|...+|.|+.-.|.-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 346899999999999999988887665 56677888888 899999999999999999999999999999998666654
Q ss_pred ee
Q 029994 99 VG 100 (184)
Q Consensus 99 ~~ 100 (184)
..
T Consensus 159 ~N 160 (498)
T KOG4849|consen 159 YN 160 (498)
T ss_pred cc
Confidence 33
No 94
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.35 E-value=2.6e-06 Score=55.93 Aligned_cols=70 Identities=23% Similarity=0.321 Sum_probs=47.8
Q ss_pred CEEEEcCCCCCCCHHH----HHHHHhhCC-CeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 029994 24 TKLYISNLDYGVSNED----IKELFSEVG-DLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~----L~~~f~~~G-~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
+.|||.|||....-.. |++++..+| .|..| . .+.|+|.|.+.+.|.+|.+.|++..+.|++|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 4689999999888655 667777776 55544 1 35899999999999999999999999999999998
Q ss_pred eeCC
Q 029994 99 VGTN 102 (184)
Q Consensus 99 ~~~~ 102 (184)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 7543
No 95
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=3.5e-07 Score=70.65 Aligned_cols=73 Identities=25% Similarity=0.411 Sum_probs=64.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 029994 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
..+....+.|.|.+|+..+.+.+|++.|..+|++....+. .+++||+|.+.+++..||+.|++..+.++.|++
T Consensus 93 ~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 93 RPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred CCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 3456678999999999999999999999999998554442 459999999999999999999999999999999
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.24 E-value=1.5e-06 Score=66.96 Aligned_cols=69 Identities=22% Similarity=0.326 Sum_probs=55.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 029994 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQL 89 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~ 89 (184)
+....-.+|||-||..+|+|++|+.+|+.|--...++|. .+.|.+ +||++|++.+.|..|+..|+|..|
T Consensus 205 ~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~~~g~~--vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 205 SGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-ARGGMP--VAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-cCCCcc--eEeecHHHHHHHHHHHHHhhccee
Confidence 344445789999999999999999999999765555543 344444 899999999999999998888655
No 97
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.24 E-value=1.7e-05 Score=65.31 Aligned_cols=84 Identities=23% Similarity=0.322 Sum_probs=74.1
Q ss_pred CCCCCCCCEEEEcCCCCC-CCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 029994 17 ASAIETGTKLYISNLDYG-VSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~-~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
+....+++.+.|.+|... ++.+.|..+|-.||.|++|+++..+ .+.|.|++.+..+.++|+..||+..+-|.+|.
T Consensus 281 p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 281 PGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 466778899999999765 6778899999999999999999776 45799999999999999999999999999999
Q ss_pred EEEeeCCCC
Q 029994 96 IEIVGTNIA 104 (184)
Q Consensus 96 V~~~~~~~~ 104 (184)
|.+++-...
T Consensus 357 v~~SkQ~~v 365 (494)
T KOG1456|consen 357 VCVSKQNFV 365 (494)
T ss_pred Eeecccccc
Confidence 999886543
No 98
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.18 E-value=2.1e-06 Score=69.66 Aligned_cols=85 Identities=24% Similarity=0.438 Sum_probs=74.3
Q ss_pred CCCCCCCEEE-EcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 029994 18 SAIETGTKLY-ISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 18 ~~~~~~~~l~-V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
....+..++| |.+|+..+++++|+.+|..++.|..+++..++ ++.+++|+||+|.....+..++.. +...+.+.++.
T Consensus 179 ~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 257 (285)
T KOG4210|consen 179 LSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLR 257 (285)
T ss_pred cccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccc
Confidence 3444556666 99999999999999999999999999999888 899999999999999999999876 78899999999
Q ss_pred EEEeeCCC
Q 029994 96 IEIVGTNI 103 (184)
Q Consensus 96 V~~~~~~~ 103 (184)
|....+..
T Consensus 258 ~~~~~~~~ 265 (285)
T KOG4210|consen 258 LEEDEPRP 265 (285)
T ss_pred cccCCCCc
Confidence 88876543
No 99
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.18 E-value=8.2e-07 Score=75.92 Aligned_cols=79 Identities=27% Similarity=0.384 Sum_probs=72.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 029994 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
..+||+--|+..++..+|.+||+.+|+|..|.|+.|+ +..++|.+||+|.+.+.+..|| .|.|..+.|.+|.|.....
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHH
Confidence 4678888888889999999999999999999999999 8899999999999999999999 6899999999999987654
Q ss_pred C
Q 029994 102 N 102 (184)
Q Consensus 102 ~ 102 (184)
.
T Consensus 258 e 258 (549)
T KOG0147|consen 258 E 258 (549)
T ss_pred H
Confidence 3
No 100
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.16 E-value=1.7e-05 Score=61.09 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=68.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CceEE
Q 029994 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLD-GKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~-g~~i~ 95 (184)
.....+...+|+.|||.+++.+.|..+|.+|.-.+.|.++..+ .+.|||+|.+...+..|...+++..|- ...+.
T Consensus 140 ~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~ 215 (221)
T KOG4206|consen 140 AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQ 215 (221)
T ss_pred ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEE
Confidence 3446778999999999999999999999999888888888654 458999999999999999999997776 77888
Q ss_pred EEEee
Q 029994 96 IEIVG 100 (184)
Q Consensus 96 V~~~~ 100 (184)
|.+++
T Consensus 216 i~~a~ 220 (221)
T KOG4206|consen 216 ITFAK 220 (221)
T ss_pred ecccC
Confidence 87764
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.09 E-value=1.5e-05 Score=70.20 Aligned_cols=74 Identities=20% Similarity=0.340 Sum_probs=66.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCe-EEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 029994 25 KLYISNLDYGVSNEDIKELFSEVGDL-KRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 25 ~l~V~nLp~~~te~~L~~~f~~~G~i-~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
.|-|.|+|+.++-+||-+||..|-.+ ..|.+.++..|+.+|-|-|.|++.++|.+|...|++..|..++|.|.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 78899999999999999999999554 456666666899999999999999999999999999999999998876
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.08 E-value=0.00015 Score=59.91 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=66.5
Q ss_pred CCCCCCCCEEEEcCC--CCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC--c
Q 029994 17 ASAIETGTKLYISNL--DYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDG--K 92 (184)
Q Consensus 17 ~~~~~~~~~l~V~nL--p~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g--~ 92 (184)
+....+.+.|.+.-| -+.+|.+.|..+....|+|.+|.|... ++. -|.|||++.+.|++|.+.||+..|.- +
T Consensus 114 ~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCC 189 (494)
T KOG1456|consen 114 DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCC 189 (494)
T ss_pred CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cce---eeEEeechhHHHHHHHhhcccccccccce
Confidence 344555666666655 445888999999999999999987643 433 69999999999999999999988874 6
Q ss_pred eEEEEEeeCCC
Q 029994 93 PMKIEIVGTNI 103 (184)
Q Consensus 93 ~i~V~~~~~~~ 103 (184)
+|+|+++++..
T Consensus 190 TLKIeyAkP~r 200 (494)
T KOG1456|consen 190 TLKIEYAKPTR 200 (494)
T ss_pred eEEEEecCcce
Confidence 99999998864
No 103
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.05 E-value=0.00018 Score=54.22 Aligned_cols=76 Identities=24% Similarity=0.371 Sum_probs=63.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC--CceE
Q 029994 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLD--GKPM 94 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~--g~~i 94 (184)
++......+|.|++||...+|++|+++..+.|.|....+..| +++.|+|...|+++-||.+|+...+. |-..
T Consensus 109 ppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~ 182 (241)
T KOG0105|consen 109 PPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETA 182 (241)
T ss_pred CcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhccccccCcCcEe
Confidence 566667889999999999999999999999999999888765 48999999999999999999886654 4444
Q ss_pred EEEE
Q 029994 95 KIEI 98 (184)
Q Consensus 95 ~V~~ 98 (184)
.|.+
T Consensus 183 yirv 186 (241)
T KOG0105|consen 183 YIRV 186 (241)
T ss_pred eEEe
Confidence 4443
No 104
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.05 E-value=2.4e-05 Score=65.12 Aligned_cols=86 Identities=21% Similarity=0.290 Sum_probs=67.5
Q ss_pred CCCCCCC-CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC-
Q 029994 14 AGRASAI-ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDG- 91 (184)
Q Consensus 14 ~~~~~~~-~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g- 91 (184)
+...... .++.+|++.|+|..++|++|+.+|.+-|-..+...... +.+-++++.+.+.|+|..|+..++.+.+..
T Consensus 404 sKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~kmal~q~~sveeA~~ali~~hnh~lgen 480 (492)
T KOG1190|consen 404 SKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKMALPQLESVEEAIQALIDLHNHYLGEN 480 (492)
T ss_pred cccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcceeecccCChhHhhhhccccccccCCCC
Confidence 3333334 66789999999999999999999998876544333222 234499999999999999999999999886
Q ss_pred ceEEEEEeeCC
Q 029994 92 KPMKIEIVGTN 102 (184)
Q Consensus 92 ~~i~V~~~~~~ 102 (184)
..|+|.+++..
T Consensus 481 ~hlRvSFSks~ 491 (492)
T KOG1190|consen 481 HHLRVSFSKST 491 (492)
T ss_pred ceEEEEeeccc
Confidence 48999998753
No 105
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.93 E-value=2.6e-05 Score=63.54 Aligned_cols=80 Identities=21% Similarity=0.379 Sum_probs=61.7
Q ss_pred CCEEEEcCCCCCCCHHH----H--HHHHhhCCCeEEEEEEeCC-CC-Ccce--EEEEEecCHHHHHHHHHHhCCCccCCc
Q 029994 23 GTKLYISNLDYGVSNED----I--KELFSEVGDLKRYSIHYDR-SG-RSKG--TAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~----L--~~~f~~~G~i~~v~i~~~~-~~-~~~g--~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
..-+||-+||+.+..++ | .++|.+||.|.+|.|.... +. ...+ -.||+|.+.|+|.+||...++..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45688989988765443 3 5789999999988776543 11 1112 259999999999999999999999999
Q ss_pred eEEEEEeeCC
Q 029994 93 PMKIEIVGTN 102 (184)
Q Consensus 93 ~i~V~~~~~~ 102 (184)
.|+..+-..+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999886554
No 106
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.93 E-value=3e-05 Score=64.10 Aligned_cols=83 Identities=14% Similarity=0.255 Sum_probs=71.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCC-eEE--EEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGD-LKR--YSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~-i~~--v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
...+.-+|.+.+||++.+.++|..+|..|-. |.. |+++.+..|++.|-|||+|.+.|.|.+|..+.+++....+.|.
T Consensus 276 ~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 276 PTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE 355 (508)
T ss_pred CCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE
Confidence 3344778999999999999999999998863 444 8888888999999999999999999999999888888889888
Q ss_pred EEEeeC
Q 029994 96 IEIVGT 101 (184)
Q Consensus 96 V~~~~~ 101 (184)
|.-+..
T Consensus 356 vfp~S~ 361 (508)
T KOG1365|consen 356 VFPCSV 361 (508)
T ss_pred EeeccH
Confidence 876554
No 107
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=4.3e-05 Score=65.93 Aligned_cols=80 Identities=21% Similarity=0.276 Sum_probs=65.6
Q ss_pred CCCEEEEcCCCCCCCH------HHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CceE
Q 029994 22 TGTKLYISNLDYGVSN------EDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLD-GKPM 94 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te------~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~-g~~i 94 (184)
-...|+|-|+|..-.. .-|..+|+++|+|..+.+..+..+..+||.|++|.+..+|+.|++.|||+.|+ .++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3578899999864221 23678899999999998888886679999999999999999999999998886 6788
Q ss_pred EEEEeeC
Q 029994 95 KIEIVGT 101 (184)
Q Consensus 95 ~V~~~~~ 101 (184)
.|...+.
T Consensus 137 ~v~~f~d 143 (698)
T KOG2314|consen 137 FVRLFKD 143 (698)
T ss_pred Eeehhhh
Confidence 8876543
No 108
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.89 E-value=6.2e-05 Score=61.46 Aligned_cols=87 Identities=14% Similarity=0.258 Sum_probs=68.0
Q ss_pred CCCCCCCCEEEEcCCCC----CCC-------HHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029994 17 ASAIETGTKLYISNLDY----GVS-------NEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~----~~t-------e~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~ 85 (184)
++-....++|.|.||=. ..+ +++|.+-..+||.|.+|.|... .+.|.+-|.|.+.++|..||+.|+
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhc
Confidence 44455568888998821 223 3456677899999999987632 457899999999999999999999
Q ss_pred CCccCCceEEEEEeeCCCCCC
Q 029994 86 NVQLDGKPMKIEIVGTNIATR 106 (184)
Q Consensus 86 g~~~~g~~i~V~~~~~~~~~~ 106 (184)
|..|.|++|..++...+....
T Consensus 336 GR~fdgRql~A~i~DG~t~~~ 356 (382)
T KOG1548|consen 336 GRWFDGRQLTASIWDGKTKFQ 356 (382)
T ss_pred CeeecceEEEEEEeCCcceee
Confidence 999999999999987655433
No 109
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.87 E-value=7.8e-06 Score=64.13 Aligned_cols=64 Identities=20% Similarity=0.352 Sum_probs=54.0
Q ss_pred HHHHHHh-hCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCC
Q 029994 39 DIKELFS-EVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTN 102 (184)
Q Consensus 39 ~L~~~f~-~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~ 102 (184)
+|...|+ +||+|+++.|..+..-.-.|-+||.|...++|++|++.||+..+.|++|..++....
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 3444445 899999987776655567889999999999999999999999999999999987654
No 110
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.79 E-value=7.2e-05 Score=64.49 Aligned_cols=62 Identities=10% Similarity=0.177 Sum_probs=52.4
Q ss_pred HHHHHhhCCCeEEEEEEeC-C---CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 029994 40 IKELFSEVGDLKRYSIHYD-R---SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 40 L~~~f~~~G~i~~v~i~~~-~---~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
++..+++||.|..|.|.++ . ..-..|..||+|.+.+++++|++.|+|..|.++++...+...
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 4555688999999999887 3 233577899999999999999999999999999999888653
No 111
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.78 E-value=8.6e-05 Score=44.93 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=40.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHH
Q 029994 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAV 81 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai 81 (184)
+.|-|.+.+....+. +..+|.+||+|..+.+... ..+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 567888888776544 4558889999999877522 348999999999999985
No 112
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.60 E-value=5.3e-05 Score=63.39 Aligned_cols=66 Identities=26% Similarity=0.280 Sum_probs=56.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeC---C---CCC--------cceEEEEEecCHHHHHHHHHHhCC
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD---R---SGR--------SKGTAEVVYSRRADAVAAVKRYNN 86 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~---~---~~~--------~~g~afV~F~~~e~a~~Ai~~l~g 86 (184)
.++++|.+.|||..-.-+.|.++|+.+|.|+.|+|+.. . .+. .+-+|+|+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46899999999999888999999999999999999876 2 111 145899999999999999998865
No 113
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.60 E-value=8.3e-05 Score=58.43 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=60.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-C--------CCc----ceEEEEEecCHHHHHHHHHHhCCCc
Q 029994 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-S--------GRS----KGTAEVVYSRRADAVAAVKRYNNVQ 88 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~--------~~~----~g~afV~F~~~e~a~~Ai~~l~g~~ 88 (184)
..-.||+++||+.+....|+++|++||.|-+|.+-... + +.. ---++|+|.+...|+.+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 55789999999999999999999999999988775544 3 121 1245799999999999999999999
Q ss_pred cCCce
Q 029994 89 LDGKP 93 (184)
Q Consensus 89 ~~g~~ 93 (184)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.60 E-value=7.4e-05 Score=65.99 Aligned_cols=84 Identities=10% Similarity=0.065 Sum_probs=71.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEE-EEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 029994 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKR-YSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~-v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
+.+...+.+|||..||..+++.++-++|...-.|+. |.|.+..+++.++.|||+|..++++..|...-+.+.+..+.|+
T Consensus 428 p~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 428 PFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEE
Confidence 477788999999999999999999999987666765 7777777888899999999998888888877778888889999
Q ss_pred EEEee
Q 029994 96 IEIVG 100 (184)
Q Consensus 96 V~~~~ 100 (184)
|.-..
T Consensus 508 v~si~ 512 (944)
T KOG4307|consen 508 VDSIA 512 (944)
T ss_pred eechh
Confidence 97543
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.55 E-value=0.00011 Score=60.82 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=62.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhC----CCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 22 TGTKLYISNLDYGVSNEDIKELFSEV----GDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~----G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
.-..|.+.+||+++++.++.++|..- +-.+.|.++...+++..|-|||.|..+++|+.|+.+ |...|..+.|.+.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 35677888999999999999999733 234567777767999999999999999999999976 7777777777665
Q ss_pred Ee
Q 029994 98 IV 99 (184)
Q Consensus 98 ~~ 99 (184)
.+
T Consensus 239 RS 240 (508)
T KOG1365|consen 239 RS 240 (508)
T ss_pred HH
Confidence 43
No 116
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=97.51 E-value=0.00029 Score=45.63 Aligned_cols=18 Identities=39% Similarity=0.612 Sum_probs=15.4
Q ss_pred CCChhhHhHHHHHHhhHH
Q 029994 160 KISAEDLDADLDKYYSEA 177 (184)
Q Consensus 160 ~~~~~~lD~el~~y~~~~ 177 (184)
..+...||+|||+||++.
T Consensus 54 ~~~~~~LD~~Ld~Y~~~~ 71 (74)
T PF13865_consen 54 SKTKSKLDAELDSYMSKK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 467889999999999954
No 117
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00037 Score=59.66 Aligned_cols=68 Identities=16% Similarity=0.311 Sum_probs=62.3
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHh-hCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHH
Q 029994 16 RASAIETGTKLYISNLDYGVSNEDIKELFS-EVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKR 83 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~-~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~ 83 (184)
...+.++.++|||++||.-++-++|-.+|. .||-|..+-|-+|. -+.++|-+=|+|.+..+..+||++
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 356788999999999999999999999999 79999999999995 778999999999999999999974
No 118
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.48 E-value=0.00089 Score=41.70 Aligned_cols=55 Identities=27% Similarity=0.309 Sum_probs=45.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhC---CCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHh
Q 029994 23 GTKLYISNLDYGVSNEDIKELFSEV---GDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRY 84 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~---G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l 84 (184)
...|+|.++.. ++.++|+.+|..| ....+|+++.|. .|.|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 46799999964 7889999999998 134678998776 5899999999999999754
No 119
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.47 E-value=0.00011 Score=63.71 Aligned_cols=80 Identities=28% Similarity=0.329 Sum_probs=63.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHh-hCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC---Cc
Q 029994 17 ASAIETGTKLYISNLDYGVSNEDIKELFS-EVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLD---GK 92 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~-~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~---g~ 92 (184)
|+....++.|||.||-.-.|.-+|+.++. ..|.|... ++|+ .+..|||.|.+.++|.+.+.+||+..+- .+
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk---IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK---IKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH---hhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 45777899999999988889999999999 56666554 2232 3558999999999999999999996653 46
Q ss_pred eEEEEEeeC
Q 029994 93 PMKIEIVGT 101 (184)
Q Consensus 93 ~i~V~~~~~ 101 (184)
.|.|.|...
T Consensus 513 ~L~adf~~~ 521 (718)
T KOG2416|consen 513 HLIADFVRA 521 (718)
T ss_pred eeEeeecch
Confidence 788877543
No 120
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00059 Score=58.45 Aligned_cols=63 Identities=14% Similarity=0.302 Sum_probs=50.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC--C--CCcce---EEEEEecCHHHHHHHHHHh
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR--S--GRSKG---TAEVVYSRRADAVAAVKRY 84 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~--~--~~~~g---~afV~F~~~e~a~~Ai~~l 84 (184)
.-+++|||++||+.++|+.|...|..||.+. |.+.... . -.++| |+|+.|+++..++.-|.+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 4478999999999999999999999999864 6665322 1 23577 9999999998888766543
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.45 E-value=0.00021 Score=64.65 Aligned_cols=82 Identities=17% Similarity=0.215 Sum_probs=71.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC--ceEEE
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDG--KPMKI 96 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g--~~i~V 96 (184)
...+.+.+||++|..|+....|...|..||.|..|.+-.. .-|+||.|++...++.|++.|-+..|.+ +.|.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 5667899999999999999999999999999998776422 3399999999999999999999999986 78999
Q ss_pred EEeeCCCCC
Q 029994 97 EIVGTNIAT 105 (184)
Q Consensus 97 ~~~~~~~~~ 105 (184)
.++.+....
T Consensus 526 dla~~~~~~ 534 (975)
T KOG0112|consen 526 DLASPPGAT 534 (975)
T ss_pred ccccCCCCC
Confidence 998876543
No 122
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.44 E-value=0.00082 Score=46.05 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=49.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEE-E-------EeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 029994 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYS-I-------HYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~-i-------~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
..+.|.|-+.|+. ....|-++|++||.|.+.. + ...+......+..|.|.++.+|++||. .||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3456788889887 5577888999999997664 0 000111224489999999999999996 4999999875
Q ss_pred EE-EEEe
Q 029994 94 MK-IEIV 99 (184)
Q Consensus 94 i~-V~~~ 99 (184)
|. |.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 53 5554
No 123
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.38 E-value=0.0015 Score=43.02 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=45.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNN 86 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g 86 (184)
...+..||+ .|.+....||.++|+.||.|. |.++.+. .|||...+.+.|..++..+..
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT------EEEEEECCCHHHHHHHHHHTT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC------cEEEEeecHHHHHHHHHHhcc
Confidence 345777777 999999999999999999975 7777554 699999999999999987754
No 124
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.35 E-value=0.00087 Score=48.79 Aligned_cols=58 Identities=21% Similarity=0.372 Sum_probs=45.1
Q ss_pred HHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCCCC
Q 029994 39 DIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIA 104 (184)
Q Consensus 39 ~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~~~ 104 (184)
+|-+.|.+||.+.-|+++.+ .-+|+|.+-+.|.+|+. +++.++.|+.|+|.+..+...
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHH
Confidence 57778889999988888743 57999999999999995 799999999999999887543
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.34 E-value=0.00017 Score=64.96 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029994 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
......|+|.|+|+..|.+.|+.++..+|.++.+.++..+.++++|.+||.|.+..++.+++...+...+.-..+.|.+.
T Consensus 733 ~~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 733 FFGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS 812 (881)
T ss_pred hhhhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence 33468899999999999999999999999999999998889999999999999999999999888888887778888886
Q ss_pred eC
Q 029994 100 GT 101 (184)
Q Consensus 100 ~~ 101 (184)
.+
T Consensus 813 np 814 (881)
T KOG0128|consen 813 NP 814 (881)
T ss_pred CC
Confidence 65
No 126
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.28 E-value=0.001 Score=53.49 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=53.1
Q ss_pred HHHHHHHHhhCCCeEEEEEEeCCCC--CcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 029994 37 NEDIKELFSEVGDLKRYSIHYDRSG--RSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 37 e~~L~~~f~~~G~i~~v~i~~~~~~--~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
++++++.+.+||+|.+|.|..+.+. .-..-.||+|+..++|.+|+-.|||..|.|+.+...+..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 3567888999999999988777621 1233579999999999999999999999999988877543
No 127
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.14 E-value=0.00089 Score=55.70 Aligned_cols=76 Identities=12% Similarity=0.215 Sum_probs=61.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC----CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029994 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR----SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~----~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
..|.|.||.+.++.++++.||.-.|+|..+.|+.+. -....-.|||-|.+...+..|.. |.+..|-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 489999999999999999999999999999887644 23345689999999999999975 6677777766666544
Q ss_pred e
Q 029994 100 G 100 (184)
Q Consensus 100 ~ 100 (184)
.
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 128
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.98 E-value=0.0015 Score=56.69 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=60.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhh--CCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCC--CccCCc
Q 029994 17 ASAIETGTKLYISNLDYGVSNEDIKELFSE--VGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNN--VQLDGK 92 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~--~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g--~~~~g~ 92 (184)
-.+..+-|.|.|.-||.++-+++++.||.. +-++..|.+-.+. -.||+|++..+|+.|.+.|.. .+|.|+
T Consensus 169 Vrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 169 VRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred cccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 345566788999999999999999999974 6678888886543 479999999999999887764 677777
Q ss_pred eEEEEE
Q 029994 93 PMKIEI 98 (184)
Q Consensus 93 ~i~V~~ 98 (184)
+|...+
T Consensus 243 pImARI 248 (684)
T KOG2591|consen 243 PIMARI 248 (684)
T ss_pred chhhhh
Confidence 766554
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.89 E-value=4.5e-05 Score=68.47 Aligned_cols=67 Identities=30% Similarity=0.391 Sum_probs=57.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 029994 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLD 90 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~ 90 (184)
.++||+||+..+.+.+|...|..++.|..+.|.... .++.+|+|||+|..++.+.+||.......+.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 578999999999999999999999998888777555 7889999999999999999999765544444
No 130
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.53 E-value=0.0027 Score=53.45 Aligned_cols=74 Identities=26% Similarity=0.282 Sum_probs=58.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCC-CccCCceEEEEEeeCC
Q 029994 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNN-VQLDGKPMKIEIVGTN 102 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g-~~~~g~~i~V~~~~~~ 102 (184)
..+||+||.+.++..+|+.+|...-.-..-.++. ..+|+||.+.+..-|.+|++.+++ .++.|+++.|+...++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 4689999999999999999997541101111111 256999999999999999999998 8889999999887654
No 131
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.53 E-value=0.004 Score=49.18 Aligned_cols=62 Identities=26% Similarity=0.475 Sum_probs=56.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029994 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~ 85 (184)
..|||.||...++-+.|.+.|+.||+|....++.|..++..+-.+|+|...-.+.+|+....
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 78999999999999999999999999988777778788888899999999999999988764
No 132
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.48 E-value=0.0055 Score=46.35 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=46.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhh-CCCe---EEEEEEeCC--C-CCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSE-VGDL---KRYSIHYDR--S-GRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~-~G~i---~~v~i~~~~--~-~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
....+|.|++||+++||+++.+.++. ++.. ..+.-.... . .....-|||.|.+.+++..-+..++++.|.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 45679999999999999998886665 5544 344322222 1 22356799999999999999999999777653
No 133
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.45 E-value=0.055 Score=48.81 Aligned_cols=67 Identities=16% Similarity=0.349 Sum_probs=48.7
Q ss_pred EEEEcCC--CCCCCHHHHHHHHhhCCCe-----EEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 25 KLYISNL--DYGVSNEDIKELFSEVGDL-----KRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 25 ~l~V~nL--p~~~te~~L~~~f~~~G~i-----~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
++|| |+ -..++..+|-.++..-+.| -.|+|.. .|.||+.. .+.+...+..|++..+.|+.|.|+
T Consensus 488 ~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~-------~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 488 LYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA-------SHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC-------CceEEEcC-hhhHHHHHHHhccccccCCceEEE
Confidence 3444 45 3357888888887655544 3455553 38899987 567888899999999999999999
Q ss_pred Eee
Q 029994 98 IVG 100 (184)
Q Consensus 98 ~~~ 100 (184)
.+.
T Consensus 559 ~~~ 561 (629)
T PRK11634 559 LLG 561 (629)
T ss_pred ECC
Confidence 875
No 134
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.90 E-value=0.0027 Score=51.86 Aligned_cols=80 Identities=18% Similarity=0.327 Sum_probs=61.1
Q ss_pred CEEEEcCCCCCCC-HHHHH--HHHhhCCCeEEEEEEeCCC----CCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 029994 24 TKLYISNLDYGVS-NEDIK--ELFSEVGDLKRYSIHYDRS----GRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 24 ~~l~V~nLp~~~t-e~~L~--~~f~~~G~i~~v~i~~~~~----~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
.-+||-+|+..+. |..|+ +.|.+||.|.+|.+..+.+ .-...-+||+|...++|..||...++..+.++.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 5577778877654 44554 5689999999988877552 122335899999999999999999999999998888
Q ss_pred EEeeCCC
Q 029994 97 EIVGTNI 103 (184)
Q Consensus 97 ~~~~~~~ 103 (184)
.+..++.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 7766543
No 135
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.78 E-value=0.012 Score=52.18 Aligned_cols=73 Identities=12% Similarity=0.250 Sum_probs=63.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
.+..+.-+|||+|+...+..+-++.++..+|.|..++... |+|++|..+.-...|+..++-..+++..+.+.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 4455678999999999999999999999999987766542 99999999999999999999999988877765
Q ss_pred E
Q 029994 98 I 98 (184)
Q Consensus 98 ~ 98 (184)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 5
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.73 E-value=0.0023 Score=58.23 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=67.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
..+.+||++||+..+++.+|+..|..+|.|..|.|...+-+.-.-|+||.|.+.+.+-.|+..+.+..|..-.+++-+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 34689999999999999999999999999999998776533444599999999999999998888888776666666653
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.59 E-value=0.093 Score=33.71 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHhhCC-----CeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029994 33 YGVSNEDIKELFSEVG-----DLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 33 ~~~te~~L~~~f~~~G-----~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
..++..+|..++...+ .|-.|+|..+ |+||+-.. +.+..++..|++..+.|++++|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3578888888887664 4556777633 89999874 5888999999999999999999875
No 138
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.20 E-value=0.18 Score=36.65 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=53.3
Q ss_pred CCCCCCCEEEEcCCCCCCC-HHH---HHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 029994 18 SAIETGTKLYISNLDYGVS-NED---IKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~t-e~~---L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
.-..+-.+|.|.=|..++. .+| +...++.||+|..|.+. .+-.|.|.|.+..+|=.|+.+++. ..-|..
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------GRQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------CCceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 3445566777776655543 234 45557899999998774 233799999999999999999876 445666
Q ss_pred EEEEEe
Q 029994 94 MKIEIV 99 (184)
Q Consensus 94 i~V~~~ 99 (184)
+.+.|-
T Consensus 154 ~qCsWq 159 (166)
T PF15023_consen 154 FQCSWQ 159 (166)
T ss_pred EEeecc
Confidence 666654
No 139
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.12 E-value=0.014 Score=49.94 Aligned_cols=74 Identities=19% Similarity=0.338 Sum_probs=58.8
Q ss_pred CCEEEEcCCCCCC-CHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 029994 23 GTKLYISNLDYGV-SNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 23 ~~~l~V~nLp~~~-te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
.+.|-+.-+|+.. +.++|..+|.+||.|..|.|-+.. -.|.|+|.+..+|-.|. ..++..|+++.|+|.|.++
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-----~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-----LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch-----hhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 3445555566664 468999999999999999886542 26899999999997775 4699999999999999887
Q ss_pred C
Q 029994 102 N 102 (184)
Q Consensus 102 ~ 102 (184)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 140
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.89 E-value=0.095 Score=39.92 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=44.3
Q ss_pred CHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhC--CCccCCceEEEEEeeCC
Q 029994 36 SNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN--NVQLDGKPMKIEIVGTN 102 (184)
Q Consensus 36 te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~--g~~~~g~~i~V~~~~~~ 102 (184)
..+.|+++|..|+.+..+.+.. +-.-..|.|.+.+.|.+|...|+ +..+.+..|+|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC-----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4578999999999887665542 23358899999999999999999 89999999999988543
No 141
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.62 E-value=0.0027 Score=53.47 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=66.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCC
Q 029994 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTN 102 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~ 102 (184)
+..+-|.|+|+...|+.|..|+.+||.++.|..+...+. .-..-|+|...+.++.||.+|++..+....++|.+....
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 466889999999999999999999999998876433221 225568899999999999999999999999999987664
Q ss_pred CC
Q 029994 103 IA 104 (184)
Q Consensus 103 ~~ 104 (184)
..
T Consensus 158 q~ 159 (584)
T KOG2193|consen 158 QN 159 (584)
T ss_pred hh
Confidence 44
No 142
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.48 E-value=0.17 Score=41.17 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=45.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 029994 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
.=|-|-++|+. .-..|..+|++||.|.+.... .+ -.+-+|.|.+..+|++||.+ |+..|++..
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~--~n---gNwMhirYssr~~A~KALsk-ng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP--SN---GNWMHIRYSSRTHAQKALSK-NGTIIDGDV 260 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecC--CC---CceEEEEecchhHHHHhhhh-cCeeeccce
Confidence 33445566654 345678899999998765332 22 33899999999999999975 888888753
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.23 E-value=0.083 Score=46.02 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=48.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHh-hCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccC----CceEEEE
Q 029994 24 TKLYISNLDYGVSNEDIKELFS-EVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLD----GKPMKIE 97 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~-~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~----g~~i~V~ 97 (184)
+++-|.|+|...|...|..... ..|.-..+.+..|= +....|||||.|.+++.+..+.+++||+.+. .+.+.|.
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 3444444444433333322221 23444556666665 5667899999999999999999999995543 2455666
Q ss_pred EeeC
Q 029994 98 IVGT 101 (184)
Q Consensus 98 ~~~~ 101 (184)
|++-
T Consensus 469 YArI 472 (549)
T KOG4660|consen 469 YARI 472 (549)
T ss_pred hhhh
Confidence 6554
No 144
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.96 E-value=1.3 Score=30.81 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=47.7
Q ss_pred CCEEEEc-CCCCCCCHHHHHHHHhhC-CCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 029994 23 GTKLYIS-NLDYGVSNEDIKELFSEV-GDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDG 91 (184)
Q Consensus 23 ~~~l~V~-nLp~~~te~~L~~~f~~~-G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g 91 (184)
.+.|.|- ..|..++.++|..+.+.+ ..|..++|+++... .+-.+.+.|.+.+.|..-.+.+||..|+-
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444443 445555666776665554 35677888877632 34578999999999999999999987764
No 145
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.77 E-value=0.45 Score=29.98 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 029994 34 GVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 34 ~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
.++-++|+..|..|.- .. |..+++ --||.|.+..+|+++....++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~t-----GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDRT-----GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecCC-----EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3678999999999953 33 444543 3589999999999999999998888777654
No 146
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.39 E-value=0.065 Score=48.95 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=56.2
Q ss_pred CCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC--CceEEEEEeeCCC
Q 029994 30 NLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLD--GKPMKIEIVGTNI 103 (184)
Q Consensus 30 nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~--g~~i~V~~~~~~~ 103 (184)
|.+-..+...|..+|++||.|..++..++- ..|.|+|.+.+.|..|+.+|+|.++. |-+.+|.+++.-.
T Consensus 305 nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 305 NNAVNLTSSSLATLCSDYGSVASAWTLRDL-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred cccccchHHHHHHHHHhhcchhhheecccc-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 344456677899999999999988776553 38999999999999999999996654 7788999888644
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=92.81 E-value=0.075 Score=43.27 Aligned_cols=81 Identities=17% Similarity=0.203 Sum_probs=62.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
...+++|++++.+.+.+.++..++..+|.+....+.... ....++++++.|...+.+..|+.......+.+..+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 457899999999999999899999999977666665544 6678999999999999999999754434555555555444
Q ss_pred eC
Q 029994 100 GT 101 (184)
Q Consensus 100 ~~ 101 (184)
..
T Consensus 166 ~~ 167 (285)
T KOG4210|consen 166 TR 167 (285)
T ss_pred cc
Confidence 43
No 148
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.52 E-value=1.1 Score=39.58 Aligned_cols=82 Identities=20% Similarity=0.258 Sum_probs=62.7
Q ss_pred CCCCCCCCEEEEcCCCCC-CCHHHHHHHHhhC----CCeEEEEEEeCCC-----------CC------------------
Q 029994 17 ASAIETGTKLYISNLDYG-VSNEDIKELFSEV----GDLKRYSIHYDRS-----------GR------------------ 62 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~-~te~~L~~~f~~~----G~i~~v~i~~~~~-----------~~------------------ 62 (184)
+...+.+++|-|.|+.|. +...+|..+|+.| |.|.+|.|+...- |.
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred cccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 445677899999999997 7789999998876 5888888765321 11
Q ss_pred -------------------cceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 029994 63 -------------------SKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 63 -------------------~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
..=||.|+|.+.+.|.+..+..+|.+|...-..+.+
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 113789999999999999999999999865444443
No 149
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.88 E-value=1.7 Score=37.38 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=57.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhC-CCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 029994 23 GTKLYISNLDYGVSNEDIKELFSEV-GDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDG 91 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~-G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g 91 (184)
++.|+|--+|..++-.||-.|+..+ -.|..++|++|.... +=.+.|.|.+.++|....+.+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn-rymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN-RYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc-eEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7899999999999999999998754 467889999866322 3368999999999999999999988875
No 150
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=88.78 E-value=2.4 Score=34.48 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=35.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCe-EEEEEEeCCCCCcceEEEEEecCH
Q 029994 24 TKLYISNLDYGVSNEDIKELFSEVGDL-KRYSIHYDRSGRSKGTAEVVYSRR 74 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i-~~v~i~~~~~~~~~g~afV~F~~~ 74 (184)
+-||++||+..+.-.||+..+.+.+.+ .++.|. -+.+-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee-----cCCcceeEecCCc
Confidence 559999999999999999999887654 444443 2356799999653
No 151
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.93 E-value=1.6 Score=37.03 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=46.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCe-EEEEEEeCCCCCcceEEEEEecCHHHHHHHHH
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDL-KRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i-~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~ 82 (184)
+-.+.|-|.++|.....+||..+|+.|+.- -.|+|+.+. .+|..|.+...|..|+-
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhh
Confidence 356899999999999999999999999753 457777554 79999999999999985
No 152
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=81.18 E-value=0.34 Score=37.77 Aligned_cols=81 Identities=28% Similarity=0.339 Sum_probs=64.6
Q ss_pred CCCCCCCEEEEcC----CCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 029994 18 SAIETGTKLYISN----LDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 18 ~~~~~~~~l~V~n----Lp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
...+...+++.++ |...++++.+.+.|++.+.+..+++..+.+++.+.+.|+++......-.++..+.+.++--++
T Consensus 75 ~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 75 EEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKK 154 (267)
T ss_pred ccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCC
Confidence 3444556777777 777889999999999999999999988888888889999998888888888877776666555
Q ss_pred EEEEE
Q 029994 94 MKIEI 98 (184)
Q Consensus 94 i~V~~ 98 (184)
+.+.-
T Consensus 155 ~~~gg 159 (267)
T KOG4454|consen 155 VTIGG 159 (267)
T ss_pred ccccc
Confidence 55543
No 153
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=79.00 E-value=1.9 Score=32.59 Aligned_cols=77 Identities=16% Similarity=0.257 Sum_probs=54.0
Q ss_pred CCCCEEEEcCCCCCCCH-----HHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCc-eE
Q 029994 21 ETGTKLYISNLDYGVSN-----EDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK-PM 94 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te-----~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~-~i 94 (184)
+-.+++.+.+|+..+-. ...+.+|.+|-+.....+. ++.+..-|.|.+++.|..|...++...|.++ .+
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-----rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-----RSFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-----HhhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 44566778888776532 2345566666555444443 2345677899999999999999999999998 77
Q ss_pred EEEEeeCC
Q 029994 95 KIEIVGTN 102 (184)
Q Consensus 95 ~V~~~~~~ 102 (184)
+.-++.+.
T Consensus 83 k~yfaQ~~ 90 (193)
T KOG4019|consen 83 KLYFAQPG 90 (193)
T ss_pred EEEEccCC
Confidence 77776653
No 154
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=77.40 E-value=8.6 Score=31.38 Aligned_cols=78 Identities=10% Similarity=0.247 Sum_probs=56.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC--------CCCcceEEEEEecCHHHHHHH----HHHhCC--Cc
Q 029994 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR--------SGRSKGTAEVVYSRRADAVAA----VKRYNN--VQ 88 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~--------~~~~~g~afV~F~~~e~a~~A----i~~l~g--~~ 88 (184)
.+.|.+.||...++-..+-..|.+||+|+.|.++.+. ..+......+.|-+.+.|..- ++.|.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5677788999888888888889999999999998765 233446788999888877553 233332 45
Q ss_pred cCCceEEEEEee
Q 029994 89 LDGKPMKIEIVG 100 (184)
Q Consensus 89 ~~g~~i~V~~~~ 100 (184)
+.-..|.|.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 566677777765
No 155
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=75.60 E-value=0.39 Score=40.48 Aligned_cols=75 Identities=8% Similarity=0.095 Sum_probs=55.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCC
Q 029994 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTN 102 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~ 102 (184)
.+|+|++|+..+...++-++|..+|.|...++-. +...-+|-|+|..-....-|+. +++.++.-+...+.+.++.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as---k~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS---KSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc---cCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCcc
Confidence 6799999999999999999999999987766542 2223367799988888888875 5777777555555555543
No 156
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=75.55 E-value=6.5 Score=24.92 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=42.1
Q ss_pred HHHHHHHhhCC-CeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 029994 38 EDIKELFSEVG-DLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 38 ~~L~~~f~~~G-~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
++|++.|..+| ++..|.-+..+ +..+...-+|+.....+... .|+-..|.++.+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46778888877 56777777666 45566778888876543333 3556778888888886554
No 157
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=75.42 E-value=9.1 Score=23.73 Aligned_cols=20 Identities=20% Similarity=0.580 Sum_probs=15.9
Q ss_pred HHHHHHHhhCCCeEEEEEEe
Q 029994 38 EDIKELFSEVGDLKRYSIHY 57 (184)
Q Consensus 38 ~~L~~~f~~~G~i~~v~i~~ 57 (184)
++|+++|+..|+|.-+-+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999997665543
No 158
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=73.41 E-value=9.6 Score=24.02 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=42.0
Q ss_pred HHHHHHHhhCC-CeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 029994 38 EDIKELFSEVG-DLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 38 ~~L~~~f~~~G-~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
++|.+.|...| +|..|.-+..+ +..+....||+.....+... .|+=..+.+..|+|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 45677777666 67777666666 66777788999876655322 3455778888888887654
No 159
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=70.23 E-value=21 Score=30.62 Aligned_cols=45 Identities=22% Similarity=0.379 Sum_probs=34.8
Q ss_pred CCCCCCCCCCCCEEEEcCCCCC-CCHHHHHHHHhhC----CCeEEEEEEe
Q 029994 13 QAGRASAIETGTKLYISNLDYG-VSNEDIKELFSEV----GDLKRYSIHY 57 (184)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~-~te~~L~~~f~~~----G~i~~v~i~~ 57 (184)
.+..|...+++.+|-|-|+.|. +...+|..+|+.| |+|..|.|+.
T Consensus 136 ag~~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 136 AGAVPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred ccCccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 4455666888999999999996 7778898888866 5777776543
No 160
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.88 E-value=0.73 Score=39.46 Aligned_cols=79 Identities=4% Similarity=-0.137 Sum_probs=60.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 029994 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
+++.|+..||..+++.+|.-+|..||-|..+.+.... .+.....+||+-.. +++..+|..+.-..+.+..++|.++..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 3456778889999999999999999998887765544 44556678887664 567777777766778888888888765
Q ss_pred C
Q 029994 102 N 102 (184)
Q Consensus 102 ~ 102 (184)
.
T Consensus 82 s 82 (572)
T KOG4365|consen 82 S 82 (572)
T ss_pred h
Confidence 4
No 161
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=68.80 E-value=0.78 Score=40.34 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=53.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDG 91 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g 91 (184)
-..|+|++.|++++++-++|..++..+--+..+.+.... ......+.+|+|.---....|+.+||+..+.-
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 456889999999999999999999988656665554433 33455678899988777778888888765543
No 162
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=67.28 E-value=17 Score=27.62 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=34.7
Q ss_pred CCHHHHHHHHh-hCCCeEEEEEEeCCCC--CcceEEEEEecCHHHHHHHHHH
Q 029994 35 VSNEDIKELFS-EVGDLKRYSIHYDRSG--RSKGTAEVVYSRRADAVAAVKR 83 (184)
Q Consensus 35 ~te~~L~~~f~-~~G~i~~v~i~~~~~~--~~~g~afV~F~~~e~a~~Ai~~ 83 (184)
.|+++|..+.. .-|++.+|.+.....+ ..+|-.||+|.+.+.|.+.++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 45555555543 2268888877655544 6789999999999999988764
No 163
>PRK11901 hypothetical protein; Reviewed
Probab=65.72 E-value=41 Score=27.94 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=40.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEE--EEEecCHHHHHHHHHHhCC
Q 029994 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTA--EVVYSRRADAVAAVKRYNN 86 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~a--fV~F~~~e~a~~Ai~~l~g 86 (184)
...+|-|..+ ..++.|+.|..+++ +..+.++... +|+. .|. |=.|.+.++|+.||..|..
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 3455555443 46888988888875 4556665544 4442 344 3379999999999998764
No 164
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=63.48 E-value=7.1 Score=30.86 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=30.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEE
Q 029994 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRY 53 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v 53 (184)
+..+...++|+-|||..++++.|.++.+++|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 566778899999999999999999999998855443
No 165
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=62.99 E-value=9.8 Score=29.02 Aligned_cols=65 Identities=26% Similarity=0.402 Sum_probs=44.6
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCC-CCcceEEEEEecCHHHHHHH
Q 029994 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRS-GRSKGTAEVVYSRRADAVAA 80 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~F~~~e~a~~A 80 (184)
..........+++.+++..++...+..+|..++.+..+.+..... .....+.++.+.....+..+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (306)
T COG0724 218 KALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALES 283 (306)
T ss_pred ccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhh
Confidence 345566788999999999999999999999999997776665552 22333333444433333333
No 166
>COG4907 Predicted membrane protein [Function unknown]
Probab=62.63 E-value=8.2 Score=33.56 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhCC
Q 029994 74 RADAVAAVKRYNN 86 (184)
Q Consensus 74 ~e~a~~Ai~~l~g 86 (184)
.+.+.+|++.++-
T Consensus 525 ~dkVvkam~~~~~ 537 (595)
T COG4907 525 SDKVVKAMRKALD 537 (595)
T ss_pred HHHHHHHHHHhCc
Confidence 4667777776555
No 167
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=56.78 E-value=16 Score=29.92 Aligned_cols=35 Identities=11% Similarity=0.062 Sum_probs=25.4
Q ss_pred EEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCCC
Q 029994 67 AEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 103 (184)
Q Consensus 67 afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~~ 103 (184)
|||+|++..+|+.|++.+.... .+.++|+.+.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 7999999999999998654433 3556776665443
No 168
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=56.34 E-value=12 Score=31.54 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=45.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCC-eEEEEEEe-CCC--CCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 029994 23 GTKLYISNLDYGVSNEDIKELFSEVGD-LKRYSIHY-DRS--GRSKGTAEVVYSRRADAVAAVKRYNNVQLD 90 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~-i~~v~i~~-~~~--~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~ 90 (184)
-+.|.|.+||...++.+|.+....+-. +....+.. +.+ ..-.+.+||.|...++...-...++++.|-
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 467889999999999988777665421 12222221 111 122567899999999988888888875554
No 169
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=56.13 E-value=22 Score=24.89 Aligned_cols=49 Identities=24% Similarity=0.296 Sum_probs=25.8
Q ss_pred CEEEEcCCCCC---------CCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCH
Q 029994 24 TKLYISNLDYG---------VSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74 (184)
Q Consensus 24 ~~l~V~nLp~~---------~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~ 74 (184)
.++.|-|++.. ++-+.|.+.|+.|..++ ++...++. -+.+++.|+|...
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKD 66 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SS
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCC
Confidence 45666777543 34578999999998775 55555544 3478999999653
No 170
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=51.43 E-value=79 Score=27.88 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=41.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHh----hCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029994 23 GTKLYISNLDYGVSNEDIKELFS----EVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~----~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~ 85 (184)
+..+.++.-....+.-+|..+|. .+|.|+++.+...+..+.....++.|.+.+++..++..+-
T Consensus 189 G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 189 GEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 34444443222223456777664 6788888887766644455677899999999999987754
No 171
>COG4907 Predicted membrane protein [Function unknown]
Probab=50.55 E-value=17 Score=31.75 Aligned_cols=11 Identities=18% Similarity=0.446 Sum_probs=4.8
Q ss_pred HHHHHHHhhCC
Q 029994 38 EDIKELFSEVG 48 (184)
Q Consensus 38 ~~L~~~f~~~G 48 (184)
+..+.+++.|.
T Consensus 489 ~aFKnfLsd~s 499 (595)
T COG4907 489 QAFKNFLSDYS 499 (595)
T ss_pred HHHHHHHHhHH
Confidence 33444444443
No 172
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=49.89 E-value=9.3 Score=25.46 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=20.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHH
Q 029994 20 IETGTKLYISNLDYGVSNEDIKELF 44 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f 44 (184)
....++|.|+|||....+++|++.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 3457889999999999999998553
No 173
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=48.01 E-value=73 Score=24.21 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=8.2
Q ss_pred CCEEEEcCCCCC
Q 029994 23 GTKLYISNLDYG 34 (184)
Q Consensus 23 ~~~l~V~nLp~~ 34 (184)
.+.+.|++|-..
T Consensus 5 N~V~LiGrLg~D 16 (182)
T PRK06958 5 NKVILVGNLGAD 16 (182)
T ss_pred cEEEEEEEecCC
Confidence 566778888554
No 174
>PF14893 PNMA: PNMA
Probab=45.26 E-value=25 Score=29.33 Aligned_cols=28 Identities=11% Similarity=0.279 Sum_probs=23.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhh
Q 029994 19 AIETGTKLYISNLDYGVSNEDIKELFSE 46 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~ 46 (184)
..+.-+.|.|.+||.+|++++|++.+..
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHH
Confidence 4566788999999999999998888753
No 175
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=43.03 E-value=97 Score=21.33 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=27.5
Q ss_pred HHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHH
Q 029994 38 EDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAV 81 (184)
Q Consensus 38 ~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai 81 (184)
.+|..++.+.| |.+-.|..+. +. .-|+|+++.+.+...++|
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n--~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEEN--LLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcc--cEEEEEEEcChHHHHHHH
Confidence 35677888886 6666666665 32 349999999666555554
No 176
>PF11430 EGL-1: Programmed cell death activator EGL-1; InterPro: IPR021543 Initiation of programmed cell death in C.elegans occurs by the binding of EGL-1 to CED-9 which disrupts a complex involving CED-4/CED-9 and allows CED-4 to activate CED-3, a caspase. It is the C-terminal domain of EGL-1 which is involved in the formation of the complex with CED-9. The formation of the complex induces structural rearrangements in CED-9 and EGL-1 adopts an extended alpha-helical conformation []. ; PDB: 1TY4_D.
Probab=42.19 E-value=11 Score=17.87 Aligned_cols=10 Identities=40% Similarity=0.896 Sum_probs=6.4
Q ss_pred hhHhHHHHHH
Q 029994 164 EDLDADLDKY 173 (184)
Q Consensus 164 ~~lD~el~~y 173 (184)
+|+|+||=+|
T Consensus 12 DdFD~emMsy 21 (21)
T PF11430_consen 12 DDFDAEMMSY 21 (21)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhcC
Confidence 5677777554
No 177
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.26 E-value=72 Score=28.11 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=43.5
Q ss_pred EEcCCCCCCC---HHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 029994 27 YISNLDYGVS---NEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 27 ~V~nLp~~~t---e~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
.||||+.-.. ...|..+-.+||+|-.+++-. .-.|.-.+.+.|+.++.. ++..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~--------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS--------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC--------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 4788876533 355666667999998777632 346777889999999965 7888888875
No 178
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=40.85 E-value=46 Score=27.00 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=4.8
Q ss_pred HHHHHHHHhh
Q 029994 37 NEDIKELFSE 46 (184)
Q Consensus 37 e~~L~~~f~~ 46 (184)
|+--.++|.+
T Consensus 80 E~ya~rlfd~ 89 (271)
T COG1512 80 EQYATRLFDK 89 (271)
T ss_pred HHHHHHHHHh
Confidence 3334455654
No 179
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=39.84 E-value=50 Score=26.98 Aligned_cols=36 Identities=11% Similarity=0.313 Sum_probs=27.0
Q ss_pred CCCEEEEcCCCC------------CCCHHHHHHHHhhCCCeEEEEEEe
Q 029994 22 TGTKLYISNLDY------------GVSNEDIKELFSEVGDLKRYSIHY 57 (184)
Q Consensus 22 ~~~~l~V~nLp~------------~~te~~L~~~f~~~G~i~~v~i~~ 57 (184)
..-+||+-+||- -.+|+.|...|..||.|..|.|..
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 345677776653 246788999999999999988754
No 180
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=39.67 E-value=12 Score=31.81 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=44.9
Q ss_pred CEEEEcCCCCCCCH--------HHHHHHHhh--CCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHH
Q 029994 24 TKLYISNLDYGVSN--------EDIKELFSE--VGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVK 82 (184)
Q Consensus 24 ~~l~V~nLp~~~te--------~~L~~~f~~--~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~ 82 (184)
..+|+.++..+... +++...|.. .+.+..|...++. ...+.|..|++|...+.++++..
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45666666555443 488899987 6677777777776 66788899999999999999874
No 181
>PRK10905 cell division protein DamX; Validated
Probab=39.34 E-value=92 Score=25.92 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=37.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeC-CCCCc-ceEEEEEecCHHHHHHHHHHhCC
Q 029994 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRS-KGTAEVVYSRRADAVAAVKRYNN 86 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~-~~~~~-~g~afV~F~~~e~a~~Ai~~l~g 86 (184)
..+|-|.-+ .+++.|+.|..+++ +....++.. ++|+. .-.-|=.|.+.++|++||..|..
T Consensus 247 ~YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 247 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred ceEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 345555444 46788888888875 333333332 25542 22234479999999999998764
No 182
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=37.84 E-value=44 Score=23.61 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=4.9
Q ss_pred CCCccCCceEE
Q 029994 85 NNVQLDGKPMK 95 (184)
Q Consensus 85 ~g~~~~g~~i~ 95 (184)
+...|.|..|+
T Consensus 57 pEcYirGttIk 67 (134)
T KOG3293|consen 57 PECYIRGTTIK 67 (134)
T ss_pred ceeEEecceeE
Confidence 33444454443
No 183
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=37.14 E-value=84 Score=20.79 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=31.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEec
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~ 72 (184)
+...-|||++++..+.|.-.+.+.+..+.-.-+-+..+.+ ..||.|-++-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n--eqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN--EQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC--CCCEEEEEeC
Confidence 4566799999998887766666666544433333333333 5678887773
No 184
>PF03438 Pneumo_NS1: Pneumovirus NS1 protein; InterPro: IPR005099 This non-structural protein is one of two found in pneumoviruses. The protein is about 140 amino acids in length. The NS1 protein appears to be important for efficient replication but not essential []. The NS1 protein has been shown by yeast two-hybrid to interact with the viral P protein []. This protein is also known as the 1C protein. It has also been shown that NS1 can potently inhibit transcription and RNA replication [].
Probab=35.72 E-value=28 Score=23.94 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=15.0
Q ss_pred CCChhhHhHHHHHHhhHHHh
Q 029994 160 KISAEDLDADLDKYYSEASE 179 (184)
Q Consensus 160 ~~~~~~lD~el~~y~~~~~~ 179 (184)
+.+..=.|++|.+||+|-+.
T Consensus 112 ~fskrlsds~~~~y~nqls~ 131 (136)
T PF03438_consen 112 KFSKRLSDSEMTKYMNQLSD 131 (136)
T ss_pred EEehhcCHHHHHHHHHHHHH
Confidence 34455569999999998765
No 185
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=35.13 E-value=32 Score=18.89 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHHhhCC
Q 029994 33 YGVSNEDIKELFSEVG 48 (184)
Q Consensus 33 ~~~te~~L~~~f~~~G 48 (184)
..+++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3578999999998764
No 186
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=35.08 E-value=67 Score=27.79 Aligned_cols=11 Identities=18% Similarity=0.178 Sum_probs=5.5
Q ss_pred CHHHHHHHHHH
Q 029994 73 RRADAVAAVKR 83 (184)
Q Consensus 73 ~~e~a~~Ai~~ 83 (184)
+.++++.+.+.
T Consensus 301 ~~~~l~~~Fk~ 311 (419)
T KOG0116|consen 301 TPAELEEVFKQ 311 (419)
T ss_pred CHHHHHHHHhh
Confidence 34455555543
No 187
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=34.60 E-value=2e+02 Score=25.80 Aligned_cols=50 Identities=12% Similarity=0.156 Sum_probs=37.2
Q ss_pred CHHHHHHHH----hhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029994 36 SNEDIKELF----SEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85 (184)
Q Consensus 36 te~~L~~~f----~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~ 85 (184)
+.-+|..+| ..+|-|.++.+...+-......+++.|.+.++|.+|+..+.
T Consensus 279 ~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 279 AGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 345777777 36788888888766644556678999999999998887643
No 188
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=34.15 E-value=47 Score=21.61 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.5
Q ss_pred cceEEEEEecCHHHHHHHHHHhCC
Q 029994 63 SKGTAEVVYSRRADAVAAVKRYNN 86 (184)
Q Consensus 63 ~~g~afV~F~~~e~a~~Ai~~l~g 86 (184)
.+||.|||=.+.+++..|+..+.+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 689999999999999999976654
No 189
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=30.28 E-value=2.2e+02 Score=24.32 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=35.8
Q ss_pred HHHHHHHHh----hCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 029994 37 NEDIKELFS----EVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85 (184)
Q Consensus 37 e~~L~~~f~----~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~ 85 (184)
-.+|..+|. .+|-|.++.+...+......+.++.|.+.+++.+++..+.
T Consensus 146 g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 146 GYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred CCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 346777764 4788888887776644455677889999999999986553
No 190
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=29.14 E-value=87 Score=27.88 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=33.7
Q ss_pred ceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCC
Q 029994 64 KGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTN 102 (184)
Q Consensus 64 ~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~ 102 (184)
..++++.|++.+.+.+|+..+++....+..+.+......
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 459999999999999999999999888888888776553
No 191
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.57 E-value=81 Score=19.71 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=19.7
Q ss_pred EEEEEecCHHHHHHHHHHhCCCcc
Q 029994 66 TAEVVYSRRADAVAAVKRYNNVQL 89 (184)
Q Consensus 66 ~afV~F~~~e~a~~Ai~~l~g~~~ 89 (184)
+.+|.|.+..+|.+|-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 689999999999999887765544
No 192
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=28.57 E-value=2e+02 Score=19.76 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=30.0
Q ss_pred HHHHHhhCCCeEEEEEEeCC--C--------------CCcceEEEEEecCHHHHHHHHHHh
Q 029994 40 IKELFSEVGDLKRYSIHYDR--S--------------GRSKGTAEVVYSRRADAVAAVKRY 84 (184)
Q Consensus 40 L~~~f~~~G~i~~v~i~~~~--~--------------~~~~g~afV~F~~~e~a~~Ai~~l 84 (184)
...+|..||.+..+...-+. . +..--|.+|+|.+.+...++..++
T Consensus 25 a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 25 AAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 45788899987766533222 2 223358899999999998887754
No 193
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=28.08 E-value=1.3e+02 Score=17.58 Aligned_cols=54 Identities=11% Similarity=0.295 Sum_probs=37.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCH----HHHHHHHHH
Q 029994 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR----ADAVAAVKR 83 (184)
Q Consensus 25 ~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~----e~a~~Ai~~ 83 (184)
++.|.++.=.-....|+..+...--|..+.+.... +.+-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~-----~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET-----KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT-----TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC-----CEEEEEEecCCCCHHHHHHHHHH
Confidence 46677776555677889999888778888886542 3677888643 566666654
No 194
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=27.59 E-value=2.4e+02 Score=21.43 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=5.1
Q ss_pred CChhhHhHH
Q 029994 161 ISAEDLDAD 169 (184)
Q Consensus 161 ~~~~~lD~e 169 (184)
-..||+|.+
T Consensus 171 ~~~~~~~~~ 179 (182)
T PRK06958 171 GGFDEMDDD 179 (182)
T ss_pred CCccccccc
Confidence 445666654
No 195
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=26.84 E-value=1.1e+02 Score=24.60 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=23.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEE
Q 029994 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRY 53 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v 53 (184)
.....|+|||++++..-|..++...-.+...
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~ 125 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDM 125 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceE
Confidence 3456699999999999999998865444333
No 196
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=26.53 E-value=1.2e+02 Score=20.57 Aligned_cols=51 Identities=6% Similarity=0.055 Sum_probs=29.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecC
Q 029994 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSR 73 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~ 73 (184)
+...-|||++++..+.+.--+.+-+.++.-.-+-+..+. .. .||.|-++.+
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~-~e-qG~~~~t~G~ 75 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATN-TE-SGFEFQTFGE 75 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCC-CC-CCcEEEecCC
Confidence 445679999998877765444444444432223333332 23 3888888764
No 197
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=26.24 E-value=1.1e+02 Score=27.92 Aligned_cols=9 Identities=22% Similarity=0.224 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 029994 74 RADAVAAVK 82 (184)
Q Consensus 74 ~e~a~~Ai~ 82 (184)
+-...-||.
T Consensus 501 ~~~~~~~i~ 509 (629)
T PRK11634 501 VRHIVGAIA 509 (629)
T ss_pred HHHHHHHHH
Confidence 334444443
No 198
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=25.99 E-value=1.6e+02 Score=19.26 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=19.8
Q ss_pred CeEEEEEEeCC-CCCcceEEEEEecC
Q 029994 49 DLKRYSIHYDR-SGRSKGTAEVVYSR 73 (184)
Q Consensus 49 ~i~~v~i~~~~-~~~~~g~afV~F~~ 73 (184)
+|..|+|..-. .++-+++|-|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46778887766 58889999999976
No 199
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.85 E-value=64 Score=22.54 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=17.3
Q ss_pred CCChhhHhHHHHHHhhHHHhhhccC
Q 029994 160 KISAEDLDADLDKYYSEASEAMQTN 184 (184)
Q Consensus 160 ~~~~~~lD~el~~y~~~~~~~~~~~ 184 (184)
..++|+.|+.+|.||. +..+.|
T Consensus 40 g~~ae~~dea~drFid---evI~~N 61 (119)
T COG3171 40 GTSAEDVDEAVDRFID---EVIAPN 61 (119)
T ss_pred CccHHHHHHHHHHHHH---HHHccC
Confidence 4568999999999999 555554
No 200
>PHA01632 hypothetical protein
Probab=25.84 E-value=82 Score=19.07 Aligned_cols=20 Identities=10% Similarity=0.371 Sum_probs=15.8
Q ss_pred EEcCCCCCCCHHHHHHHHhh
Q 029994 27 YISNLDYGVSNEDIKELFSE 46 (184)
Q Consensus 27 ~V~nLp~~~te~~L~~~f~~ 46 (184)
.|-.+|...||++|+..+.+
T Consensus 20 lieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred ehhhcCCCCCHHHHHHHHHH
Confidence 34578999999999987754
No 201
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=25.71 E-value=30 Score=27.80 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=52.2
Q ss_pred CCEEEEcCCCCCCCHHH-H--HHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 23 GTKLYISNLDYGVSNED-I--KELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~-L--~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
-..++++++-..+..+- | ...|+.|-.+...+++.+.-+....++|+.|.......++-..-++..+.-.+|++.
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 34556666655555443 3 777888877777888888877778899999998777777766555566665555543
No 202
>PF15502 MPLKIP: M-phase-specific PLK1-interacting protein
Probab=25.68 E-value=1.1e+02 Score=22.31 Aligned_cols=12 Identities=25% Similarity=0.720 Sum_probs=8.9
Q ss_pred hHHHHHHhhHHHhhhc
Q 029994 167 DADLDKYYSEASEAMQ 182 (184)
Q Consensus 167 D~el~~y~~~~~~~~~ 182 (184)
+ .+|.|++ .+|-
T Consensus 114 ~-~ie~Yy~---pSML 125 (151)
T PF15502_consen 114 G-GIEQYYH---PSML 125 (151)
T ss_pred C-CHHHhcC---HHhh
Confidence 5 8888888 6664
No 203
>PHA00370 III attachment protein
Probab=25.49 E-value=1.7e+02 Score=23.68 Aligned_cols=7 Identities=14% Similarity=0.244 Sum_probs=3.2
Q ss_pred CCCCCCH
Q 029994 31 LDYGVSN 37 (184)
Q Consensus 31 Lp~~~te 37 (184)
||+-+++
T Consensus 12 ~pf~t~~ 18 (297)
T PHA00370 12 LPFYTHE 18 (297)
T ss_pred cccccCC
Confidence 3554443
No 204
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=25.30 E-value=2.5e+02 Score=19.89 Aligned_cols=72 Identities=11% Similarity=0.109 Sum_probs=47.7
Q ss_pred CCCEEEEcCCCCC---CCHHHHHHHHhhCC-CeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 029994 22 TGTKLYISNLDYG---VSNEDIKELFSEVG-DLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 22 ~~~~l~V~nLp~~---~te~~L~~~f~~~G-~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
+...|.|+..... .+-..+++.+.+-| .++.+..- .....|.|.+.++-.+|.+.|....-++..|.+.
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAln 106 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQ 106 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 3456677766333 45677888888776 23444332 2268899999999999988887665555666666
Q ss_pred Eee
Q 029994 98 IVG 100 (184)
Q Consensus 98 ~~~ 100 (184)
++.
T Consensus 107 l~p 109 (127)
T PRK10629 107 DDN 109 (127)
T ss_pred cCC
Confidence 654
No 205
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=25.11 E-value=1.3e+02 Score=17.20 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=21.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCC
Q 029994 24 TKLYISNLDYGVSNEDIKELFSEVGD 49 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~ 49 (184)
..++|.+.....+.++|++++..+|-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 56788887667788999999999885
No 206
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=24.60 E-value=2e+02 Score=18.50 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=37.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-CC-CeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHH
Q 029994 26 LYISNLDYGVSNEDIKELFSE-VG-DLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83 (184)
Q Consensus 26 l~V~nLp~~~te~~L~~~f~~-~G-~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~ 83 (184)
.|+-.++..++..+|+..++. |+ .|..|....-+.+. --|||.+..-+.|...-.+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~--KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE--KKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--eEEEEEECCCCcHHHHHHh
Confidence 455567888999999988886 44 45566555444322 2599999887777765443
No 207
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=24.06 E-value=2.2e+02 Score=18.70 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=38.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhh-CC-CeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHH
Q 029994 26 LYISNLDYGVSNEDIKELFSE-VG-DLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83 (184)
Q Consensus 26 l~V~nLp~~~te~~L~~~f~~-~G-~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~ 83 (184)
.|+--++..++..+|++.++. |+ .|..|.....+.+. --|||.+...+.|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~--KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE--KKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--EEEEEEeCCCCcHHHHHHh
Confidence 344446788899999988886 44 45666665554332 2599999888887776543
No 208
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=23.43 E-value=1.2e+02 Score=26.05 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=37.2
Q ss_pred CCCHHHHHHHH----hhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHH
Q 029994 34 GVSNEDIKELF----SEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAV 81 (184)
Q Consensus 34 ~~te~~L~~~f----~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai 81 (184)
+-|--+|+.+| ...|.|+.|.|...+..++...||+-.++-+++++++
T Consensus 235 DNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf~~v~k~f 286 (511)
T KOG1232|consen 235 DNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESFDDVQKVF 286 (511)
T ss_pred cCccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEccccHHHHHHHH
Confidence 34556788888 3568889999988777777889999888888887754
No 209
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.32 E-value=69 Score=24.71 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=13.0
Q ss_pred hhhHhHHHHHHhhHHHh
Q 029994 163 AEDLDADLDKYYSEASE 179 (184)
Q Consensus 163 ~~~lD~el~~y~~~~~~ 179 (184)
-|+|-.||.|||.+++|
T Consensus 128 IedlQDem~Dlmd~a~E 144 (218)
T KOG1655|consen 128 IEDLQDEMEDLMDQADE 144 (218)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46777888888887754
No 210
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=23.04 E-value=85 Score=24.92 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=22.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHh--hCCC
Q 029994 22 TGTKLYISNLDYGVSNEDIKELFS--EVGD 49 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~--~~G~ 49 (184)
....+.|+|||+.++..-|..++. .+|.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g~ 125 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFGR 125 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGCE
T ss_pred CCceEEEEEecccchHHHHHHHhhcccccc
Confidence 456788999999999999999987 4543
No 211
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=21.87 E-value=2.1e+02 Score=20.36 Aligned_cols=60 Identities=13% Similarity=0.126 Sum_probs=37.3
Q ss_pred HHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 029994 37 NEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 37 e~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
|.+|+..|- |.-+..+.|.... ...-+-++.+.+.. ...++..+.+..+.+++|.|....
T Consensus 2 e~~lkAa~l-~nf~~f~~WP~~~--~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 2 EYQLKAAYL-YNFAKFIEWPDSA--PSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHHHHHHHH-HHhHhhccCCCCC--CCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 455665543 1123445565442 22336677776655 556788888899999999998764
No 212
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=21.77 E-value=27 Score=21.88 Aligned_cols=37 Identities=14% Similarity=0.297 Sum_probs=24.6
Q ss_pred HHHHHHHhhCCCeEE-EEEEeCCCCCcceEEEEEecCHHHHHHHHHHh
Q 029994 38 EDIKELFSEVGDLKR-YSIHYDRSGRSKGTAEVVYSRRADAVAAVKRY 84 (184)
Q Consensus 38 ~~L~~~f~~~G~i~~-v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l 84 (184)
++|.+.|..+....+ |++ .+|.-|.+.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~vkL----------~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL----------KAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh----------hhccCCCCHHHHHHHHHHh
Confidence 567777765433322 223 6899999999988887654
No 213
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=21.66 E-value=1.9e+02 Score=19.46 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=19.2
Q ss_pred CeEEEEEEeCC-CCCcceEEEEEecC
Q 029994 49 DLKRYSIHYDR-SGRSKGTAEVVYSR 73 (184)
Q Consensus 49 ~i~~v~i~~~~-~~~~~g~afV~F~~ 73 (184)
+|+.|+|..-. .++-+++|-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 46777776554 67889999999986
No 214
>KOG3172 consensus Small nuclear ribonucleoprotein Sm D3 [RNA processing and modification]
Probab=21.56 E-value=2.8e+02 Score=19.11 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=13.9
Q ss_pred HHHhCCCccCCceEEEEEeeC
Q 029994 81 VKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 81 i~~l~g~~~~g~~i~V~~~~~ 101 (184)
+..|+...|.|..|+.-+..+
T Consensus 55 vs~le~V~IRGS~IRFlvlPd 75 (119)
T KOG3172|consen 55 VSQLEQVFIRGSKIRFLVLPD 75 (119)
T ss_pred ceeeeeEEEecCeEEEEECch
Confidence 445666778888887766543
No 215
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=20.25 E-value=2.3e+02 Score=17.55 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=27.1
Q ss_pred HHHHHHHHhhCC-CeEEEEEEeCCCCCcceEEEEEec-CHHHHHHHHHHhCC
Q 029994 37 NEDIKELFSEVG-DLKRYSIHYDRSGRSKGTAEVVYS-RRADAVAAVKRYNN 86 (184)
Q Consensus 37 e~~L~~~f~~~G-~i~~v~i~~~~~~~~~g~afV~F~-~~e~a~~Ai~~l~g 86 (184)
-.++-..|+.++ .+.+|.-...+.....=+-||++. ..+..++|++.|..
T Consensus 14 L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 14 LARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 456777788776 334433322222222334567776 45566777777654
Done!