BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029996
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14442|PIGH_HUMAN Phosphatidylinositol N-acetylglucosaminyltransferase subunit H
OS=Homo sapiens GN=PIGH PE=1 SV=1
Length = 188
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 71 FILSASLLKLFLWKPVKQESVIIMPALGVQLETHFLSGRTTRRFFPIGKILRPVLLECVT 130
FI LL + + QE+++I+ +LG+Q+ + + SG+ + F +GK+ V+ E +
Sbjct: 70 FITLLGLLGYLHFVKIDQETLLIIDSLGIQMTSSYASGKESTTFIEMGKVKDIVINEAIY 129
Query: 131 PLTCYWSLSLIVRDE------GELMLVFKELRPPVKMLVPIWKA 168
+ L ++++D +++ VF+ +P + L+ ++++
Sbjct: 130 MQKVIYYLCILLKDPVEPHGISQVVPVFQSAKPRLDCLIEVYRS 173
>sp|Q5M9N4|PIGH_MOUSE Phosphatidylinositol N-acetylglucosaminyltransferase subunit H
OS=Mus musculus GN=Pigh PE=2 SV=1
Length = 188
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 75/155 (48%), Gaps = 26/155 (16%)
Query: 39 RFFIYVCLVIGLSNAVFLVLSKHESVTILFW------------SFILSAS-------LLK 79
R++ C GLS+A L L +VT W S +LSA+ LL
Sbjct: 20 RYYSPYCREFGLSSAR-LSLCSLTAVTCAVWLAAYGLFTLCENSMVLSATIFITILGLLG 78
Query: 80 LFLWKPVKQESVIIMPALGVQLETHFLSGRTTRRFFPIGKILRPVLLECVTPLTCYWSLS 139
+ + QE+++I+ +LG+Q+ + + SG+ + F + K+ ++ E + + L
Sbjct: 79 YLHFVKIDQETLLIIDSLGIQMTSSYASGKESTTFIEMDKVKDIIINEAIYMQKVIYYLC 138
Query: 140 LIVRDEGE------LMLVFKELRPPVKMLVPIWKA 168
+++++ G+ ++ VF+ +P + L+ ++++
Sbjct: 139 ILLKEPGKPHEISRVVPVFQSAKPRLDCLIEVYRS 173
>sp|Q32L89|PIGH_BOVIN Phosphatidylinositol N-acetylglucosaminyltransferase subunit H
OS=Bos taurus GN=PIGH PE=2 SV=1
Length = 188
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/104 (19%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 71 FILSASLLKLFLWKPVKQESVIIMPALGVQLETHFLSGRTTRRFFPIGKILRPVLLECVT 130
FI LL + + E+++I+ +LG+Q+ + + SG+ + F +GK+ ++ E +
Sbjct: 70 FITLLGLLGYLHFVKIDHETLLIIDSLGIQMTSSYASGKESTTFIEMGKVKDVIINEAIY 129
Query: 131 PLTCYWSLSLIVRDE------GELMLVFKELRPPVKMLVPIWKA 168
+ L ++++D +++ +F+ +P + L+ ++++
Sbjct: 130 MQKVIYYLCILLKDPVEPHGISQVVPIFQSAKPRLDCLIEVYRS 173
>sp|P58274|LONB_THEVO Archaeal Lon protease OS=Thermoplasma volcanium (strain ATCC 51530
/ DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=TV0493
PE=3 SV=1
Length = 655
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 34 RSRASRFFIYVCLVIGLSNAVFLVLSKHESVTILFWSFILSASLLKLFLWKPVKQESVII 93
RSR+ F I+ +++G+ A+ L S+T++F++ + +A L + PV + +
Sbjct: 122 RSRSIMFVIFSVVLLGIIAAIVL-----RSITLIFFAIMAAAFLYMAMAFNPVIRNEKAM 176
Query: 94 MPALGV 99
+P L V
Sbjct: 177 VPKLLV 182
>sp|Q9HJ89|LONB_THEAC Archaeal Lon protease OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=Ta1081 PE=1 SV=1
Length = 657
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 34 RSRASRFFIYVCLVIGLSNAVFLVLSKHESVTILFWSFILSASLLKLFLWKPVKQESVII 93
RSR+ F I+ +++G+ A+ L S+T++F++ + +A L + PV + +
Sbjct: 122 RSRSIMFVIFSVVLLGIIAAIVL-----RSITLIFFAIMAAAFLYMAMAFNPVIRNERAM 176
Query: 94 MPALGV 99
+P L V
Sbjct: 177 VPKLLV 182
>sp|O94296|YOOC_SCHPO Probable phospholipid-transporting ATPase C887.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC887.12 PE=3 SV=1
Length = 1258
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 98 GVQLETHFLSGRTTRRFFPIGKILRPVLLECVTPLTCYWSLSLIVRDEGELMLVFKELRP 157
GV L T+ L RRFF + + R V+ V+PL + ++ R+ GE++L +
Sbjct: 854 GVSL-TYALDFSLERRFFELASLCRAVICCRVSPLQKALIVKMVKRNTGEVLLAIGDGAN 912
Query: 158 PVKML 162
V M+
Sbjct: 913 DVPMI 917
>sp|Q32131|NU5C_DIGGR NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment)
OS=Digitalis grandiflora GN=ndhF PE=3 SV=1
Length = 699
Score = 30.0 bits (66), Expect = 9.9, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 21/109 (19%)
Query: 43 YVCLVIGLSN---AVFLVLSKHESVTILFW-SFILSASLLKLFLWKPVKQESVIIMPALG 98
Y+ L +G+ + A+F +++ S +LF S + S+ + + P K +++++M L
Sbjct: 321 YMMLALGMGSYRSALFHLITHAYSKALLFLGSGSVIHSMETIVGYSPEKSQNMVLMGGL- 379
Query: 99 VQLETHFLSGRTTRRFFPIGKI---LRPVLLECVTPLTCYWSLSLIVRD 144
R++ PI KI L + L + PL C+WS I+ D
Sbjct: 380 -------------RKYVPITKISFLLGTLSLCGIPPLACFWSKDEILND 415
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.141 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,721,988
Number of Sequences: 539616
Number of extensions: 2316461
Number of successful extensions: 6171
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6168
Number of HSP's gapped (non-prelim): 13
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)