Query 029996
Match_columns 184
No_of_seqs 94 out of 96
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:54:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4551 GPI-GlcNAc transferase 100.0 5.3E-44 1.1E-48 293.6 8.7 175 8-183 1-184 (184)
2 PF10181 PIG-H: GPI-GlcNAc tra 99.9 5.6E-27 1.2E-31 167.7 8.9 65 90-154 1-69 (69)
3 COG1575 MenA 1,4-dihydroxy-2-n 26.8 1E+02 0.0022 28.2 4.3 23 36-58 220-242 (303)
4 PRK14750 kdpF potassium-transp 18.8 1.3E+02 0.0028 18.7 2.3 17 46-62 12-28 (29)
5 PF12046 DUF3529: Protein of u 17.4 6.2E+02 0.014 21.5 6.9 79 11-90 55-135 (173)
6 PRK14748 kdpF potassium-transp 14.4 2.1E+02 0.0045 17.9 2.4 19 44-62 10-28 (29)
7 PF10003 DUF2244: Integral mem 12.9 6.8E+02 0.015 19.6 8.5 30 76-105 51-80 (140)
8 PF02920 Integrase_DNA: DNA bi 12.8 46 0.00099 24.2 -0.9 15 2-16 13-27 (67)
9 PF05297 Herpes_LMP1: Herpesvi 12.6 70 0.0015 29.9 0.0 41 40-84 31-75 (381)
10 PF11982 DUF3483: Domain of un 11.8 3.8E+02 0.0082 23.8 4.2 16 24-39 50-65 (224)
No 1
>KOG4551 consensus GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-44 Score=293.59 Aligned_cols=175 Identities=39% Similarity=0.633 Sum_probs=161.1
Q ss_pred ecceeEEEEeccC--CCCCcceeEEEEecCCc------cchhhhHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHH
Q 029996 8 ENRKYTYRRELKW--PVEAIDIHHVVVRRSRA------SRFFIYVCLVIGLSNAVFLVLSKHESVTILFWSFILSASLLK 79 (184)
Q Consensus 8 ~~~~yty~h~~~~--p~~~~dih~~~v~~s~~------~~~~~~~~~v~lla~~~~~~l~~~~~~~~~l~s~~~~~~l~~ 79 (184)
+|+||||.|++.. .-+..|+|+..+.-+-. +.+...+|.+|+.+||++.+. .+|++....|.+.++-++++
T Consensus 1 ~~~~~t~~~~~g~~lt~~r~~~~p~~ief~~~t~~~s~~~l~f~lcf~~~~~yG~~~l~-~~~~~~~~~~~~~LsglL~~ 79 (184)
T KOG4551|consen 1 SNKRYTYIHESGSKLTRERIDIHPVIIEFSSGTGYASRWGLGFFLCFLASSMYGIIHLK-QDNPARTLSWGCLLSGLLVM 79 (184)
T ss_pred CCcceeeeecccchhhhhhhccCcceEEeecCCchhcccchhhHHHHHHHHHhhhhhhh-cCCchHHHHHHHHHHHHHHH
Confidence 5899999999864 55689999998865433 557888999999999999988 58889889999999999999
Q ss_pred HHhhcccceeeEEEEcCceeEEEEEeecCceeeEEeecCCccceEEeeceeCcEEEEEEEEEEecCCeEE-eecccCCCC
Q 029996 80 LFLWKPVKQESVIIMPALGVQLETHFLSGRTTRRFFPIGKILRPVLLECVTPLTCYWSLSLIVRDEGELM-LVFKELRPP 158 (184)
Q Consensus 80 ~l~~~~v~~ESLlVi~~lGVQlst~y~sG~~~~rFIp~~kI~diVINEa~~~~~V~~yLaliv~ge~~lv-vvF~~l~Pr 158 (184)
+..+|.|++|||+|+|+||||++++|++|+++++|||+|||+|||||||++++.|.||++++.+++.|.+ +|||.++||
T Consensus 80 lH~~k~V~~Esl~Ii~~lGIQ~~~sy~sgK~ss~fIpidkI~divinE~v~~q~vcYy~~il~~~~~E~hv~VF~~l~Pr 159 (184)
T KOG4551|consen 80 LHSRKFVKKESLIIIPTLGIQLETSYLSGKTSSRFIPIDKILDIVINECVTPQIVCYYSLILFLRGEEQHVLVFKELRPR 159 (184)
T ss_pred HHHHhhcCcceEEEEcccceEEEeeeccCcccceeeEcchhHHhHHhhccchhHhhHhHHhhhcCCcccchhhhhhcCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999987775 599999999
Q ss_pred ccchHHHHHhhhhhhcCCCCCCcCC
Q 029996 159 VKMLVPIWKALCATIDCKESPDADD 183 (184)
Q Consensus 159 ~~~L~~Vyr~~~~~l~~~~~~~~~~ 183 (184)
++||++|||++|++|.+++++.|++
T Consensus 160 ld~Lv~Vyk~~~~~la~~~~s~t~~ 184 (184)
T KOG4551|consen 160 LDMLVPVYKALCAALATDHQSETIA 184 (184)
T ss_pred HHHHHHHHHHHHHHHccCcccccCC
Confidence 9999999999999999999999974
No 2
>PF10181 PIG-H: GPI-GlcNAc transferase complex, PIG-H component; InterPro: IPR019328 This entry represents a conserved domain found in PIG-H proteins. PIG-H is a family of conserved proteins that complexes with three other proteins to form the GPI-GnT (glycosylphosphatidylinositol anchor biosynthesis transferase) complex. It appears to be a peripheral membrane protein that faces the cytoplasm and which is involved in the first step in GPI anchor formation. ; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity
Probab=99.94 E-value=5.6e-27 Score=167.68 Aligned_cols=65 Identities=42% Similarity=0.788 Sum_probs=63.2
Q ss_pred eEEEEcCceeEEEEE---eecCce-eeEEeecCCccceEEeeceeCcEEEEEEEEEEecCCeEEeeccc
Q 029996 90 SVIIMPALGVQLETH---FLSGRT-TRRFFPIGKILRPVLLECVTPLTCYWSLSLIVRDEGELMLVFKE 154 (184)
Q Consensus 90 SLlVi~~lGVQlst~---y~sG~~-~~rFIp~~kI~diVINEa~~~~~V~~yLaliv~ge~~lvvvF~~ 154 (184)
||+|||++|||+|++ |++|+. +++|||+++|+|++|||||++++|+||||+++||+++++++||+
T Consensus 1 SllV~~~~GiQl~t~~g~~~~g~~~~~~FIp~~~I~divInE~~~~~~V~fyL~vl~k~~~~l~v~F~~ 69 (69)
T PF10181_consen 1 SLLVIPGLGIQLSTKRGWYFSGRSSSRRFIPIDKIIDIVINEGFTGFQVIFYLAVLVKGESSLVVVFPE 69 (69)
T ss_pred CEEEECCcEEEEEEEeCcEEcCceeEEEEEEHHHeeEEEEEeeEECCEEEEEEEEEEECCCeEEEeCCC
Confidence 899999999999999 999987 89999999999999999999999999999999999999999985
No 3
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=26.81 E-value=1e+02 Score=28.23 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=9.4
Q ss_pred CccchhhhHHHHHHHHHHHHHHH
Q 029996 36 RASRFFIYVCLVIGLSNAVFLVL 58 (184)
Q Consensus 36 ~~~~~~~~~~~v~lla~~~~~~l 58 (184)
++|.++.-...++.++..++..+
T Consensus 220 ~~~~l~~~l~~~a~l~~~~~~i~ 242 (303)
T COG1575 220 NARKLYAALLVVAYLAIVIFVIL 242 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333344444444444
No 4
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=18.76 E-value=1.3e+02 Score=18.73 Aligned_cols=17 Identities=12% Similarity=0.364 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhcCc
Q 029996 46 LVIGLSNAVFLVLSKHE 62 (184)
Q Consensus 46 ~v~lla~~~~~~l~~~~ 62 (184)
..++++|-+|.++|.|.
T Consensus 12 v~lLl~YLvYAL~naE~ 28 (29)
T PRK14750 12 VLLLLGYLVYALFNAED 28 (29)
T ss_pred HHHHHHHHHHHHcCccc
Confidence 35667899999988764
No 5
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=17.42 E-value=6.2e+02 Score=21.49 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=39.3
Q ss_pred eeEEEEeccCCCCCcceeEEEEecCCccchhhhHHHHHHHHHHHHHHHhcCchhhHHHHH-HHHHHHHHHHHhhcc-cce
Q 029996 11 KYTYRRELKWPVEAIDIHHVVVRRSRASRFFIYVCLVIGLSNAVFLVLSKHESVTILFWS-FILSASLLKLFLWKP-VKQ 88 (184)
Q Consensus 11 ~yty~h~~~~p~~~~dih~~~v~~s~~~~~~~~~~~v~lla~~~~~~l~~~~~~~~~l~s-~~~~~~l~~~l~~~~-v~~ 88 (184)
+.+|....--|++++=.-+=.|+.|.+--.|.-+|+.+-++|...-+. --....++.|. +.+..=++.+.||++ -+.
T Consensus 55 ~r~y~v~~~d~~~~~itFeG~V~pS~~lA~fLt~l~~~Gl~cl~LVL~-~l~P~~g~~~~~L~lLsPlAG~~Yw~kA~R~ 133 (173)
T PF12046_consen 55 QRNYRVAEGDAEGEVITFEGFVAPSWFLAIFLTFLAAIGLACLGLVLS-ILFPDLGWWPLLLVLLSPLAGIFYWQKAGRP 133 (173)
T ss_pred hcCceecccCccccEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHHHH-HHcCCcccHHHHHHHHhhhhhhhhhhcCCCc
Confidence 455666654455666556667777777666666665554444322221 11222222222 222223555666665 556
Q ss_pred ee
Q 029996 89 ES 90 (184)
Q Consensus 89 ES 90 (184)
|.
T Consensus 134 E~ 135 (173)
T PF12046_consen 134 EQ 135 (173)
T ss_pred ce
Confidence 65
No 6
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=14.44 E-value=2.1e+02 Score=17.85 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhcCc
Q 029996 44 VCLVIGLSNAVFLVLSKHE 62 (184)
Q Consensus 44 ~~~v~lla~~~~~~l~~~~ 62 (184)
++.+.+++|-+|++++.|.
T Consensus 10 ilv~lLlgYLvyALi~aE~ 28 (29)
T PRK14748 10 LLVFLLLGYLVYALINAEA 28 (29)
T ss_pred HHHHHHHHHHHHHHhCccc
Confidence 3446678899999887664
No 7
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=12.93 E-value=6.8e+02 Score=19.63 Aligned_cols=30 Identities=7% Similarity=-0.023 Sum_probs=20.3
Q ss_pred HHHHHHhhcccceeeEEEEcCceeEEEEEe
Q 029996 76 SLLKLFLWKPVKQESVIIMPALGVQLETHF 105 (184)
Q Consensus 76 ~l~~~l~~~~v~~ESLlVi~~lGVQlst~y 105 (184)
...+..+++.-..|.+.+-|+--+-.+...
T Consensus 51 ~a~~~~~r~~~~~E~I~l~~~~~~~~~~~~ 80 (140)
T PF10003_consen 51 YAFRRNYRHARDYERITLSPDDLLVVRVDP 80 (140)
T ss_pred HHHHHHHhhCcCcEEEEEeCCeeEEEEEcC
Confidence 344555666688999999886666665543
No 8
>PF02920 Integrase_DNA: DNA binding domain of tn916 integrase; InterPro: IPR004191 The integrase family of site-specific recombinases catalyze a diverse array of DNA rearrangements in archaebacteria, eubacteria and yeast. The structure of the DNA binding domain of the the conjugative transposon Tn916 integrase protein was determined using NMR spectroscopy. The N-terminal domain was found to be structurally similar to the double stranded RNA binding domain (dsRBD). Experimental evidence suggests that the integrase protein interacts with DNA using residues located on the face of its three stranded beta-sheet [].; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 3QH9_A 1TN9_A 2BB8_A 1BB8_A 1B69_A.
Probab=12.83 E-value=46 Score=24.15 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=12.9
Q ss_pred CcceeeecceeEEEE
Q 029996 2 VGENWIENRKYTYRR 16 (184)
Q Consensus 2 ~~~~~i~~~~yty~h 16 (184)
.||+...|+||.|+-
T Consensus 13 ~gEsqrkdgRy~yky 27 (67)
T PF02920_consen 13 KGESQRKDGRYLYKY 27 (67)
T ss_dssp CCCCCHCCCHCCCCC
T ss_pred hhhHHHHhhhhhhee
Confidence 489999999999875
No 9
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=12.58 E-value=70 Score=29.88 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCchhhHHHHHH----HHHHHHHHHHhhc
Q 029996 40 FFIYVCLVIGLSNAVFLVLSKHESVTILFWSF----ILSASLLKLFLWK 84 (184)
Q Consensus 40 ~~~~~~~v~lla~~~~~~l~~~~~~~~~l~s~----~~~~~l~~~l~~~ 84 (184)
++...+++|+ +.++-=+ ...++.+++|+ +++++++++.+||
T Consensus 31 lll~ail~w~--~iimsd~--t~~a~~vl~sfAvvliiIIiIImlF~Rr 75 (381)
T PF05297_consen 31 LLLVAILVWF--FIIMSDL--TQGALTVLYSFAVVLIIIIIIIMLFKRR 75 (381)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHH--HHHHhcc--ccchHHHHHHHHHHHHHHHHHHHHHHHh
No 10
>PF11982 DUF3483: Domain of unknown function (DUF3483); InterPro: IPR021872 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length. This domain is found associated with PF02754 from PFAM.
Probab=11.83 E-value=3.8e+02 Score=23.81 Aligned_cols=16 Identities=44% Similarity=0.756 Sum_probs=13.4
Q ss_pred CcceeEEEEecCCccc
Q 029996 24 AIDIHHVVVRRSRASR 39 (184)
Q Consensus 24 ~~dih~~~v~~s~~~~ 39 (184)
=+|+||++=|..+..+
T Consensus 50 lVDlHHVVaRd~y~ar 65 (224)
T PF11982_consen 50 LVDLHHVVARDPYIAR 65 (224)
T ss_pred eeechhheeccHHHHh
Confidence 5899999999988744
Done!