Query 029996
Match_columns 184
No_of_seqs 94 out of 96
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 10:49:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xbr_A Protein (T protein); co 9.6 74 0.0025 25.5 0.4 22 6-28 56-78 (184)
2 4a04_A T-box transcription fac 8.2 59 0.002 26.5 -0.8 21 7-27 71-93 (203)
3 1b69_A Protein (integrase); in 7.1 1.6E+02 0.0056 20.4 1.2 16 2-17 13-28 (69)
4 3t46_A SCIN-D; secreted, virul 6.7 1.9E+02 0.0066 21.2 1.5 15 162-176 75-89 (91)
5 2win_M Staphylococcal compleme 6.2 2.2E+02 0.0077 20.9 1.6 15 162-176 77-91 (92)
6 3t49_A SCIN-B, fibrinogen-bind 5.7 2.3E+02 0.0078 20.0 1.3 13 162-174 60-72 (73)
7 2qrd_A SNF1-like protein kinas 5.6 1.6E+02 0.0054 22.7 0.5 17 156-172 21-37 (137)
8 3h6q_A Macrocypin 1A; mycocypi 5.1 2.8E+02 0.0096 22.4 1.7 17 6-22 2-20 (169)
9 4h6h_A Fibrinogen-binding prot 5.0 2.9E+02 0.01 20.1 1.5 13 162-174 74-86 (87)
10 3t47_A SCIN-D; secreted, virul 4.6 2.4E+02 0.0083 20.2 0.9 13 162-174 68-80 (81)
No 1
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4
Probab=9.60 E-value=74 Score=25.55 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=16.5
Q ss_pred eeecceeEEEEeccC-CCCCccee
Q 029996 6 WIENRKYTYRRELKW-PVEAIDIH 28 (184)
Q Consensus 6 ~i~~~~yty~h~~~~-p~~~~dih 28 (184)
.+.|.||.| |+++| |++..|-+
T Consensus 56 ~~D~~ryk~-~~~~W~~~gkae~~ 78 (184)
T 1xbr_A 56 AADNHRWKY-VNGEWVPGGKPEPQ 78 (184)
T ss_dssp ESSSCEEEE-ETTEEEEESSCCCC
T ss_pred EccCceEEE-ECCcEEEcCccCCC
Confidence 356899999 78888 77777643
No 2
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}
Probab=8.15 E-value=59 Score=26.50 Aligned_cols=21 Identities=19% Similarity=0.629 Sum_probs=15.9
Q ss_pred eecceeEEE-EeccC-CCCCcce
Q 029996 7 IENRKYTYR-RELKW-PVEAIDI 27 (184)
Q Consensus 7 i~~~~yty~-h~~~~-p~~~~di 27 (184)
+.|.||.|. |.++| |++..|-
T Consensus 71 ~D~~ryry~~~~~~W~~~gkae~ 93 (203)
T 4a04_A 71 VDDKRYRYAFHSSSWLVAGKADP 93 (203)
T ss_dssp SCSEEEEEETTTTEEEEEEECCC
T ss_pred ccCCeEEecccCCCEeECCccCC
Confidence 568899997 88888 7666654
No 3
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=7.12 E-value=1.6e+02 Score=20.39 Aligned_cols=16 Identities=25% Similarity=0.492 Sum_probs=12.9
Q ss_pred CcceeeecceeEEEEe
Q 029996 2 VGENWIENRKYTYRRE 17 (184)
Q Consensus 2 ~~~~~i~~~~yty~h~ 17 (184)
-||+.=+|+||.|.-.
T Consensus 13 ~GesqR~dG~Y~yry~ 28 (69)
T 1b69_A 13 TGESQRKDGRYLYKYI 28 (69)
T ss_dssp TTEEECSSSCEEEEEE
T ss_pred CCeEEccCCcEEEEEE
Confidence 4888889999987754
No 4
>3t46_A SCIN-D; secreted, virulence, immune system; 1.50A {Staphylococcus aureus subsp}
Probab=6.73 E-value=1.9e+02 Score=21.17 Aligned_cols=15 Identities=13% Similarity=0.445 Sum_probs=12.0
Q ss_pred hHHHHHhhhhhhcCC
Q 029996 162 LVPIWKALCATIDCK 176 (184)
Q Consensus 162 L~~Vyr~~~~~l~~~ 176 (184)
|+.||+++.+++.++
T Consensus 75 LE~IY~eIde~i~s~ 89 (91)
T 3t46_A 75 LESIYNSISNPLHSQ 89 (91)
T ss_dssp HHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHhhc
Confidence 788888888887765
No 5
>2win_M Staphylococcal complement inhibitor; serine protease, immune response, innate immunity, zymogen, secreted, protease, glycation; HET: NDG NAG MAN BMA; 3.90A {Staphylococcus aureus}
Probab=6.24 E-value=2.2e+02 Score=20.86 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=11.1
Q ss_pred hHHHHHhhhhhhcCC
Q 029996 162 LVPIWKALCATIDCK 176 (184)
Q Consensus 162 L~~Vyr~~~~~l~~~ 176 (184)
|+.||+++.+++.++
T Consensus 77 LEnIY~eIde~i~~~ 91 (92)
T 2win_M 77 LQKIYNEIDEALKSK 91 (92)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhc
Confidence 678888888877653
No 6
>3t49_A SCIN-B, fibrinogen-binding protein; secreted, virulence, immune system; HET: GOL; 1.45A {Staphylococcus aureus subsp} PDB: 3t4a_G
Probab=5.72 E-value=2.3e+02 Score=20.00 Aligned_cols=13 Identities=31% Similarity=0.462 Sum_probs=9.4
Q ss_pred hHHHHHhhhhhhc
Q 029996 162 LVPIWKALCATID 174 (184)
Q Consensus 162 L~~Vyr~~~~~l~ 174 (184)
|+.||+++.+++.
T Consensus 60 LE~IY~eI~e~i~ 72 (73)
T 3t49_A 60 LEKIYKEIDEIIN 72 (73)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6778888777764
No 7
>2qrd_A SNF1-like protein kinase SSP2; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.129.6.2 PDB: 2ooy_A* 2qr1_A* 2qrc_A* 2oox_A* 2qre_A*
Probab=5.63 E-value=1.6e+02 Score=22.69 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=14.5
Q ss_pred CCCccchHHHHHhhhhh
Q 029996 156 RPPVKMLVPIWKALCAT 172 (184)
Q Consensus 156 ~Pr~~~L~~Vyr~~~~~ 172 (184)
.+|.+++.+|||+++++
T Consensus 21 s~P~eIM~EVyrALk~L 37 (137)
T 2qrd_A 21 GDAPEILLAVYRALQRA 37 (137)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 46789999999999985
No 8
>3h6q_A Macrocypin 1A; mycocypin, cysteine protease inhibitor, kunitz type inhibitor, beta trefoil; 1.64A {Macrolepiota procera}
Probab=5.14 E-value=2.8e+02 Score=22.41 Aligned_cols=17 Identities=29% Similarity=0.233 Sum_probs=11.1
Q ss_pred eeecceeEEEE--eccCCC
Q 029996 6 WIENRKYTYRR--ELKWPV 22 (184)
Q Consensus 6 ~i~~~~yty~h--~~~~p~ 22 (184)
+..||-||.+| |++.|.
T Consensus 2 sfe~G~YTLr~~~~~~sP~ 20 (169)
T 3h6q_A 2 GFEDGFYTILHLAEGQHPN 20 (169)
T ss_dssp CCCCEEEEEEEECTTCCTT
T ss_pred cccCCeEEEEeecccCCCc
Confidence 56677777777 554454
No 9
>4h6h_A Fibrinogen-binding protein; complement system, innate immunity, staphylococcus aureus ST biology, immune system; 2.50A {Staphylococcus aureus subsp} PDB: 4h6i_A
Probab=4.97 E-value=2.9e+02 Score=20.07 Aligned_cols=13 Identities=31% Similarity=0.462 Sum_probs=9.4
Q ss_pred hHHHHHhhhhhhc
Q 029996 162 LVPIWKALCATID 174 (184)
Q Consensus 162 L~~Vyr~~~~~l~ 174 (184)
|+.||+++-+++.
T Consensus 74 LE~IY~eIde~i~ 86 (87)
T 4h6h_A 74 LEKIYKEIDEIIN 86 (87)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 6778887777764
No 10
>3t47_A SCIN-D; secreted, virulence, immune system; 1.30A {Staphylococcus aureus subsp} PDB: 3t48_A*
Probab=4.56 E-value=2.4e+02 Score=20.24 Aligned_cols=13 Identities=15% Similarity=0.473 Sum_probs=7.9
Q ss_pred hHHHHHhhhhhhc
Q 029996 162 LVPIWKALCATID 174 (184)
Q Consensus 162 L~~Vyr~~~~~l~ 174 (184)
|+.||+++.+++.
T Consensus 68 LE~IY~eI~e~i~ 80 (81)
T 3t47_A 68 LESIYNSISNPLH 80 (81)
T ss_dssp HHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHhc
Confidence 5667777666553
Done!