Query 029996
Match_columns 184
No_of_seqs 94 out of 96
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 10:49:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029996.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029996hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bb8a_ d.10.1.1 (A:) DNA-bind 27.7 10 0.00075 25.2 1.2 17 2-18 13-29 (71)
2 d1rzhh2 f.23.10.1 (H:11-35) Ph 22.4 46 0.0033 17.9 3.1 18 66-83 5-23 (26)
3 d2rhwa1 c.69.1.10 (A:4-286) 2- 8.4 2.6E+02 0.019 18.7 4.9 51 111-173 6-57 (283)
4 d1yfna1 b.136.1.1 (A:4-111) St 7.9 2.1E+02 0.015 19.6 4.1 36 92-128 60-95 (108)
5 d1ou8a_ b.136.1.1 (A:) Stringe 7.6 2.2E+02 0.016 19.4 4.1 36 92-128 58-93 (106)
6 d1kcxa1 b.92.1.3 (A:15-66,A:40 7.5 3.5E+02 0.025 18.6 6.0 85 86-171 44-136 (142)
7 d1to0a_ c.116.1.3 (A:) Hypothe 7.1 26 0.0019 24.9 -1.4 21 150-170 130-150 (157)
8 d1o6da_ c.116.1.3 (A:) Hypothe 6.8 30 0.0022 24.4 -1.2 21 150-170 122-142 (147)
9 d1ns5a_ c.116.1.3 (A:) Hypothe 6.3 33 0.0024 24.2 -1.2 21 150-170 125-145 (153)
10 d1tifa_ d.15.8.1 (A:) Translat 5.7 2.8E+02 0.02 17.5 3.6 41 122-162 2-57 (76)
No 1
>d1bb8a_ d.10.1.1 (A:) DNA-binding domain from tn916 integrase {Enterococcus faecalis [TaxId: 1351]}
Probab=27.68 E-value=10 Score=25.23 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.5
Q ss_pred CcceeeecceeEEEEec
Q 029996 2 VGENWIENRKYTYRREL 18 (184)
Q Consensus 2 ~~~~~i~~~~yty~h~~ 18 (184)
.||++=+||||.|+---
T Consensus 13 ~GEsQR~DGrY~ykY~d 29 (71)
T d1bb8a_ 13 TGESQRKDGRYLYKYID 29 (71)
T ss_dssp TTCEECTTSCEEEEEEC
T ss_pred CCccCcCCCcEEEEEEc
Confidence 49999999999998643
No 2
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=22.36 E-value=46 Score=17.87 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=9.5
Q ss_pred HHHHHH-HHHHHHHHHHhh
Q 029996 66 ILFWSF-ILSASLLKLFLW 83 (184)
Q Consensus 66 ~~l~s~-~~~~~l~~~l~~ 83 (184)
...|++ +|-+++++.+++
T Consensus 5 laiw~fw~ffalli~ylqt 23 (26)
T d1rzhh2 5 LAIYSFWIFLAGLIYYLQT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 344554 455556666654
No 3
>d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]}
Probab=8.42 E-value=2.6e+02 Score=18.70 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=30.7
Q ss_pred eeEEeecCCccceEEeec-eeCcEEEEEEEEEEecCCeEEeecccCCCCccchHHHHHhhhhhh
Q 029996 111 TRRFFPIGKILRPVLLEC-VTPLTCYWSLSLIVRDEGELMLVFKELRPPVKMLVPIWKALCATI 173 (184)
Q Consensus 111 ~~rFIp~~kI~diVINEa-~~~~~V~~yLaliv~ge~~lvvvF~~l~Pr~~~L~~Vyr~~~~~l 173 (184)
+.+|++ +||. +.++++.|+ .+|++++++....+-....+....++.+...+
T Consensus 6 ~~~~~~--------~~~~~~~~~~i~y~----~~G~G~~ivllHG~~~~~~~~~~~~~~l~~~~ 57 (283)
T d2rhwa1 6 TSKFVK--------INEKGFSDFNIHYN----EAGNGETVIMLHGGGPGAGGWSNYYRNVGPFV 57 (283)
T ss_dssp HEEEEE--------EEETTEEEEEEEEE----EECCSSEEEEECCCSTTCCHHHHHTTTHHHHH
T ss_pred CCccEE--------ecCCccCCEEEEEE----EEcCCCeEEEECCCCCChhHHHHHHHHHHHHH
Confidence 456765 3443 556677664 57887777666656556666566555554433
No 4
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]}
Probab=7.91 E-value=2.1e+02 Score=19.57 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=26.3
Q ss_pred EEEcCceeEEEEEeecCceeeEEeecCCccceEEeec
Q 029996 92 IIMPALGVQLETHFLSGRTTRRFFPIGKILRPVLLEC 128 (184)
Q Consensus 92 lVi~~lGVQlst~y~sG~~~~rFIp~~kI~diVINEa 128 (184)
+.|.+=+|+.+..| +|....-+||++.|..|.=.|.
T Consensus 60 L~i~nd~IsF~aRF-~G~~~~i~vP~~AV~aIyarEn 95 (108)
T d1yfna1 60 LELANDEVRFNARF-GGIPRQVSVPLAAVLAIYAREN 95 (108)
T ss_dssp EEECSSEEEEEEEE-TTEEEEEEEEGGGEEEEEETTT
T ss_pred EEEcCCEEEEEEEE-CCeeEEEEEEHHHhheeeeccc
Confidence 34556666666555 5777889999999988877664
No 5
>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]}
Probab=7.65 E-value=2.2e+02 Score=19.38 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=25.9
Q ss_pred EEEcCceeEEEEEeecCceeeEEeecCCccceEEeec
Q 029996 92 IIMPALGVQLETHFLSGRTTRRFFPIGKILRPVLLEC 128 (184)
Q Consensus 92 lVi~~lGVQlst~y~sG~~~~rFIp~~kI~diVINEa 128 (184)
|.|.+=+|+.+..| +|....-+||++.|..|.=.|.
T Consensus 58 L~i~nd~IsF~aRF-~G~~~~i~vP~~AV~aIyarEn 93 (106)
T d1ou8a_ 58 LQLTNDFIQFNARF-KGVSRELYIPMGAALAIYAREN 93 (106)
T ss_dssp EEECSSEEEEEEEE-TTEEEEEEEEGGGEEEEEETTT
T ss_pred EEEeCCEEEEEEEE-CCccEEEEEEHHHhhhheeccc
Confidence 34555566665554 6777889999999988876664
No 6
>d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.47 E-value=3.5e+02 Score=18.59 Aligned_cols=85 Identities=9% Similarity=0.187 Sum_probs=63.0
Q ss_pred cceeeEEEEcCceeEEEEEeecCceeeEEeecCCccceEEeeceeCcEEE-EEEEEEEec-----CCeEEe--ecccCCC
Q 029996 86 VKQESVIIMPALGVQLETHFLSGRTTRRFFPIGKILRPVLLECVTPLTCY-WSLSLIVRD-----EGELML--VFKELRP 157 (184)
Q Consensus 86 v~~ESLlVi~~lGVQlst~y~sG~~~~rFIp~~kI~diVINEa~~~~~V~-~yLaliv~g-----e~~lvv--vF~~l~P 157 (184)
+.-+-..++|+.|..---+.+.- ....=|.-+.++.-.=|=.|.++++. +-...+++| +++++. -.=+++|
T Consensus 44 IDa~G~~v~~~~G~dAdl~i~Dp-~~~~~i~~~~~~sk~~~tpf~G~~~~G~v~~Ti~rG~~v~~~g~~~~~~g~G~fl~ 122 (142)
T d1kcxa1 44 IEANGRMVIIAVGSDADVVIWDP-DKMKTITAKSHKSTVEYNIFEGMECHGSPLVVISQGKIVFEDGNISVSKGMGRFIP 122 (142)
T ss_dssp EECTTCEEECCTTSBCCEEEEEE-EEEEECCTTTCSSSSSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCC
T ss_pred echhhcceeecccccceEEEEec-cceEEEcchhccccCCccCCcCCEEEEEEEEEEECCEEEEECCEEeEcCCCCeEec
Confidence 34455678888888877777663 33455677777777778889999999 888888988 455542 2556999
Q ss_pred CccchHHHHHhhhh
Q 029996 158 PVKMLVPIWKALCA 171 (184)
Q Consensus 158 r~~~L~~Vyr~~~~ 171 (184)
|.+.=..+|+.++.
T Consensus 123 r~~~~~~~~~~~~~ 136 (142)
T d1kcxa1 123 RKPFPEHLYQRVRI 136 (142)
T ss_dssp CCSSCHHHHHHHHH
T ss_pred CCCCChHHHHHHHH
Confidence 99999999998753
No 7
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]}
Probab=7.06 E-value=26 Score=24.86 Aligned_cols=21 Identities=14% Similarity=0.282 Sum_probs=18.8
Q ss_pred eecccCCCCccchHHHHHhhh
Q 029996 150 LVFKELRPPVKMLVPIWKALC 170 (184)
Q Consensus 150 vvF~~l~Pr~~~L~~Vyr~~~ 170 (184)
+.|||-+=|+-.+|.+||+.+
T Consensus 130 mT~pH~l~r~~l~EQiYRa~t 150 (157)
T d1to0a_ 130 MTFPHQLMRLILVEQIYRAFR 150 (157)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHH
Confidence 678899999999999999975
No 8
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=6.76 E-value=30 Score=24.43 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=18.6
Q ss_pred eecccCCCCccchHHHHHhhh
Q 029996 150 LVFKELRPPVKMLVPIWKALC 170 (184)
Q Consensus 150 vvF~~l~Pr~~~L~~Vyr~~~ 170 (184)
..|||-+=|+-.+|.+||+.+
T Consensus 122 mT~pH~l~rv~l~EQlYRa~~ 142 (147)
T d1o6da_ 122 MTFTHGMTVLIVLEQIFRAFK 142 (147)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHH
Confidence 578999999999999999875
No 9
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]}
Probab=6.25 E-value=33 Score=24.18 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=18.7
Q ss_pred eecccCCCCccchHHHHHhhh
Q 029996 150 LVFKELRPPVKMLVPIWKALC 170 (184)
Q Consensus 150 vvF~~l~Pr~~~L~~Vyr~~~ 170 (184)
..|||-+=|+-.+|.+||+.+
T Consensus 125 mT~pH~lar~~l~EQlYRa~~ 145 (153)
T d1ns5a_ 125 LTLPHPLVRVLVAESLYRAWS 145 (153)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHH
Confidence 578999999999999999875
No 10
>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.67 E-value=2.8e+02 Score=17.51 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=27.5
Q ss_pred ceEEeeceeCcEEEEE------EEEEEec---------CCeEEeecccCCCCccch
Q 029996 122 RPVLLECVTPLTCYWS------LSLIVRD---------EGELMLVFKELRPPVKML 162 (184)
Q Consensus 122 diVINEa~~~~~V~~y------Laliv~g---------e~~lvvvF~~l~Pr~~~L 162 (184)
+..|||-|+--+|+-- |+++-.. +-++|.+=++..||+.-+
T Consensus 2 ~~~iNe~I~a~~VrlI~~~G~~lGv~~~~eAl~~A~~~glDLV~vs~~a~PPVcKi 57 (76)
T d1tifa_ 2 DFIINEQIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRI 57 (76)
T ss_dssp CCCBGGGCCCSEEEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEEETTSSSCEEEE
T ss_pred CccccCCccCCEEEEECCCCcEeCeecHHHHHHHHHHcCCCEEEecCCCCCCEEEE
Confidence 4568999998888831 3333322 246688888899987654
Done!