Query 029997
Match_columns 184
No_of_seqs 123 out of 860
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:55:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0861 SNARE protein YKT6, sy 100.0 9.5E-51 2.1E-55 297.0 16.3 181 1-184 1-183 (198)
2 KOG0859 Synaptobrevin/VAMP-lik 100.0 2.9E-46 6.3E-51 278.5 13.6 166 1-183 1-170 (217)
3 KOG0862 Synaptobrevin/VAMP-lik 100.0 1.6E-33 3.5E-38 214.1 16.2 174 3-184 2-180 (216)
4 COG5143 SNC1 Synaptobrevin/VAM 100.0 2.4E-30 5.3E-35 194.1 14.0 172 1-184 1-175 (190)
5 PF13774 Longin: Regulated-SNA 99.8 2.7E-18 5.9E-23 115.0 10.7 79 45-126 1-82 (83)
6 KOG0860 Synaptobrevin/VAMP-lik 99.5 2.6E-14 5.6E-19 99.2 6.3 48 136-183 27-74 (116)
7 PF00957 Synaptobrevin: Synapt 99.4 2.4E-13 5.2E-18 92.2 5.3 47 137-183 2-48 (89)
8 PF04099 Sybindin: Sybindin-li 95.1 0.93 2E-05 33.1 13.2 95 3-103 1-112 (142)
9 PF04086 SRP-alpha_N: Signal r 94.3 0.31 6.7E-06 39.5 8.3 90 42-132 4-100 (279)
10 PF09426 Nyv1_N: Vacuolar R-SN 93.9 0.1 2.2E-06 37.5 4.1 56 45-100 46-110 (141)
11 KOG3368 Transport protein part 91.9 3.5 7.6E-05 29.7 13.2 94 1-100 1-102 (140)
12 COG5143 SNC1 Synaptobrevin/VAM 91.3 0.11 2.4E-06 39.7 1.5 45 139-183 95-139 (190)
13 PF01217 Clat_adaptor_s: Clath 90.5 5.1 0.00011 28.9 14.1 94 4-107 3-96 (141)
14 PF08923 MAPKK1_Int: Mitogen-a 90.0 5.3 0.00012 28.3 12.0 94 3-102 17-112 (119)
15 KOG0938 Adaptor complexes medi 88.2 13 0.00028 31.3 11.2 70 57-129 42-116 (446)
16 COG5122 TRS23 Transport protei 86.8 8.8 0.00019 27.0 10.0 84 45-131 46-130 (134)
17 KOG3369 Transport protein part 80.1 13 0.00029 28.2 7.2 44 58-103 123-167 (199)
18 PF04799 Fzo_mitofusin: fzo-li 71.4 14 0.0003 27.9 5.5 45 138-182 109-153 (171)
19 PF06008 Laminin_I: Laminin Do 65.6 58 0.0013 26.1 8.5 53 122-179 181-233 (264)
20 KOG0781 Signal recognition par 60.6 82 0.0018 28.1 8.7 83 17-107 11-95 (587)
21 smart00096 UTG Uteroglobin. 57.5 24 0.00052 22.5 3.9 43 122-164 19-62 (69)
22 PF01099 Uteroglobin: Uteroglo 57.0 17 0.00038 22.7 3.2 44 121-164 16-60 (67)
23 cd00633 Secretoglobin Secretog 50.9 36 0.00077 21.2 3.9 43 121-163 16-59 (67)
24 PHA03011 hypothetical protein; 48.5 75 0.0016 21.8 5.3 57 121-179 63-119 (120)
25 PF10112 Halogen_Hydrol: 5-bro 48.2 62 0.0013 24.7 5.7 45 120-164 134-182 (199)
26 KOG1983 Tomosyn and related SN 48.0 8.6 0.00019 37.0 1.0 30 154-183 943-972 (993)
27 KOG0811 SNARE protein PEP12/VA 47.4 58 0.0013 26.5 5.5 46 137-182 179-224 (269)
28 PF05739 SNARE: SNARE domain; 46.5 63 0.0014 19.3 6.2 43 137-179 3-45 (63)
29 PF03164 Mon1: Trafficking pro 45.5 2E+02 0.0044 24.8 9.3 52 56-107 53-104 (415)
30 PF04628 Sedlin_N: Sedlin, N-t 44.3 80 0.0017 22.4 5.4 91 16-106 6-106 (132)
31 PF12277 DUF3618: Protein of u 42.2 60 0.0013 18.9 3.7 27 140-166 5-31 (49)
32 PF03908 Sec20: Sec20; InterP 42.0 85 0.0018 20.8 5.0 34 143-179 6-39 (92)
33 PF02520 DUF148: Domain of unk 41.1 70 0.0015 22.0 4.6 40 122-164 23-62 (113)
34 KOG2740 Clathrin-associated pr 39.6 1.4E+02 0.003 25.6 6.6 45 64-108 53-97 (418)
35 PF06825 HSBP1: Heat shock fac 39.4 59 0.0013 19.7 3.4 40 140-182 12-51 (54)
36 PF05527 DUF758: Domain of unk 38.0 55 0.0012 25.1 3.9 78 83-166 108-185 (186)
37 PHA02557 22 prohead core prote 37.0 1.3E+02 0.0029 24.4 6.0 91 91-181 89-190 (271)
38 PF04048 Sec8_exocyst: Sec8 ex 36.3 56 0.0012 23.6 3.6 35 137-171 85-122 (142)
39 CHL00139 rpl18 ribosomal prote 36.1 58 0.0013 22.7 3.5 63 4-70 27-93 (109)
40 TIGR00060 L18_bact ribosomal p 35.2 62 0.0013 22.7 3.5 60 4-70 36-98 (114)
41 PF08858 IDEAL: IDEAL domain; 34.8 41 0.00088 18.5 2.0 19 149-167 9-27 (37)
42 PHA03386 P10 fibrous body prot 34.1 95 0.0021 21.0 4.0 15 138-152 19-33 (94)
43 COG1242 Predicted Fe-S oxidore 33.8 2.1E+02 0.0047 23.6 6.7 90 12-102 39-142 (312)
44 PLN03223 Polycystin cation cha 32.8 1.1E+02 0.0024 30.8 5.7 45 136-180 1579-1623(1634)
45 PHA01811 hypothetical protein 31.6 62 0.0013 20.2 2.6 20 55-74 3-22 (78)
46 PTZ00032 60S ribosomal protein 31.3 69 0.0015 25.0 3.4 32 40-71 163-196 (211)
47 smart00397 t_SNARE Helical reg 31.2 1.2E+02 0.0025 17.9 5.8 44 137-180 11-54 (66)
48 smart00537 DCX Domain in the D 29.9 57 0.0012 21.6 2.5 48 39-86 34-83 (89)
49 PF13077 DUF3909: Protein of u 29.6 1.3E+02 0.0028 20.0 4.1 37 61-97 69-108 (108)
50 PHA02979 hypothetical protein; 28.2 1.6E+02 0.0034 20.8 4.4 31 58-88 61-91 (140)
51 COG5541 RET3 Vesicle coat comp 27.0 2.7E+02 0.0059 20.8 7.7 67 37-105 41-108 (187)
52 cd00193 t_SNARE Soluble NSF (N 26.4 1.4E+02 0.003 17.2 5.7 42 138-179 6-47 (60)
53 PF00957 Synaptobrevin: Synapt 26.2 1.9E+02 0.0041 18.7 5.8 46 138-183 10-55 (89)
54 PF09388 SpoOE-like: Spo0E lik 26.1 1.3E+02 0.0029 17.0 4.4 31 143-173 2-39 (45)
55 PF15601 Imm42: Immunity prote 25.7 1.1E+02 0.0023 22.3 3.4 26 131-156 46-71 (134)
56 PF12579 DUF3755: Protein of u 24.3 65 0.0014 17.6 1.6 19 137-155 16-34 (35)
57 PF07897 DUF1675: Protein of u 24.2 86 0.0019 25.7 3.0 26 63-88 238-263 (284)
58 PF12352 V-SNARE_C: Snare regi 24.2 1.8E+02 0.0038 17.7 5.8 44 137-180 7-50 (66)
59 KOG2196 Nuclear porin [Nuclear 23.5 4E+02 0.0086 21.5 7.1 79 84-173 65-151 (254)
60 PF12732 YtxH: YtxH-like prote 23.2 2E+02 0.0044 18.0 5.6 12 118-129 21-32 (74)
61 PF07352 Phage_Mu_Gam: Bacteri 22.3 3.1E+02 0.0067 19.8 5.5 44 137-180 9-53 (149)
62 COG0776 HimA Bacterial nucleoi 20.8 1.2E+02 0.0025 20.6 2.7 26 144-169 19-44 (94)
63 PF13040 DUF3901: Protein of u 20.6 1.8E+02 0.0039 16.4 3.2 26 151-176 9-34 (40)
64 PF05542 DUF760: Protein of un 20.3 98 0.0021 20.4 2.2 27 139-165 14-41 (86)
65 PF04100 Vps53_N: Vps53-like, 20.1 1.6E+02 0.0036 25.1 4.1 40 121-160 140-179 (383)
No 1
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.5e-51 Score=296.97 Aligned_cols=181 Identities=59% Similarity=0.890 Sum_probs=170.3
Q ss_pred CeEEEEEEEeeCCCCCCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeeccEEEEEEee-CCEEEE
Q 029997 1 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNR-NGLCVM 79 (184)
Q Consensus 1 M~i~~~~v~r~~~~~~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~~~k~~~~~~~~~~h~l~~-~~~~~~ 79 (184)
||||+++|+|+++ +++.+|+.+.|+++||||+|++++|+|.|+++++++|.+|++|+++++++|.+|++++ ||++++
T Consensus 1 Mki~sl~V~~~~~--~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~g~rqsvk~~~Y~~h~yvrndgL~~V 78 (198)
T KOG0861|consen 1 MKIYSLSVLHKGT--SDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGPGQRQSVKHEEYLVHVYVRNDGLCGV 78 (198)
T ss_pred CceEEEEEEeeCC--cchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCcccccccccceeEEEEEEecCCeeEE
Confidence 9999999999954 7999999999999999999999999999999999999999999999999999999999 599999
Q ss_pred EEecCCCChHHHHHHHHHHHHHHHhhcccc-hhhhhcCCCCCchHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHhH
Q 029997 80 GFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTI 158 (184)
Q Consensus 80 ~vtd~~~~~~~af~fL~ei~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~m~~y~~~~~~d~l~~i~~~l~evk~im~~Ni 158 (184)
+++|.+||.|+||.+|.+|.++|....+.. |+ +.......++.|+.++.+|+||..+|+|.++|+||+|+|.||+++|
T Consensus 79 ~~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~-~~~~~~~~~~~L~~~l~kyqdP~ead~l~kvQ~EldETKiiLhkTi 157 (198)
T KOG0861|consen 79 LIADDEYPVRVAFTLLNKVLDEFTTKVPATQWP-VGETADLSYPYLDTLLSKYQDPAEADPLLKVQNELDETKIILHKTI 157 (198)
T ss_pred EEecCcCchhHHHHHHHHHHHHHhhcCcccccC-cCCCcCCCchhHHHHHHHhcChhhhChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997765554 87 3333446789999999999999999999999999999999999999
Q ss_pred HHHHhchhchHHHHHhhHHhhhhhcC
Q 029997 159 DSVLARGEKLDSLVEKSSDLSAASQT 184 (184)
Q Consensus 159 ~~iL~Rge~Le~L~~ks~~L~~~sk~ 184 (184)
+.+|+||||||+||+||++|+.+|||
T Consensus 158 esVL~RgEKLDdLV~KSe~Ls~qSKm 183 (198)
T KOG0861|consen 158 ESVLERGEKLDDLVSKSENLSLQSKM 183 (198)
T ss_pred HHHHHccchHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999986
No 2
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-46 Score=278.51 Aligned_cols=166 Identities=26% Similarity=0.415 Sum_probs=153.9
Q ss_pred CeEEEEEEEeeCCCCCCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCC--CceeEeeccEEEEEEeeCCEEE
Q 029997 1 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPG--QRQSVQHEEYKVHSYNRNGLCV 78 (184)
Q Consensus 1 M~i~~~~v~r~~~~~~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~~--~k~~~~~~~~~~h~l~~~~~~~ 78 (184)
|.|+|++|+|. +++|+++++++ |+| ..|+.++|+++|++ .|.+|++|+|+||++++||++|
T Consensus 1 m~iiYs~VARG------TvvLaeft~~~--gNf---------~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~ty 63 (217)
T KOG0859|consen 1 MSIIYSFVARG------TVILAEFTEFS--GNF---------SSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTY 63 (217)
T ss_pred CceeEEEEecc------eEEEEeeeecc--CCH---------HHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEE
Confidence 89999999994 68999999998 777 67899999999974 5999999999999999999999
Q ss_pred EEEecCCCChHHHHHHHHHHHHHHHhhcccchhhhh--cCCCCCchHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHH
Q 029997 79 MGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQ--ADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHK 156 (184)
Q Consensus 79 ~~vtd~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~--~~~~~~~~~l~~~m~~y~~~~~~d~l~~i~~~l~evk~im~~ 156 (184)
+||+|+++.+++||.||++|++.|.+.|+....++. +.+.+|++.|++.|+.|.+..+.|+|.+++.|++|||+||.+
T Consensus 64 lcvadds~gR~ipfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~id~lskvkaqv~evk~vM~e 143 (217)
T KOG0859|consen 64 LCVADDSAGRQIPFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPEISKLAKVKAQVTEVKGVMME 143 (217)
T ss_pred EEEEeccccccccHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998866655 348899999999999997555599999999999999999999
Q ss_pred hHHHHHhchhchHHHHHhhHHhhhhhc
Q 029997 157 TIDSVLARGEKLDSLVEKSSDLSAASQ 183 (184)
Q Consensus 157 Ni~~iL~Rge~Le~L~~ks~~L~~~sk 183 (184)
|||++|+|||+||.|++||++|+.+|.
T Consensus 144 NIekvldRGekiELLVdKTenl~~~s~ 170 (217)
T KOG0859|consen 144 NIEKVLDRGEKIELLVDKTENLRSKSF 170 (217)
T ss_pred HHHHHHhccCeEEeeechhhhhhhhhH
Confidence 999999999999999999999998864
No 3
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-33 Score=214.13 Aligned_cols=174 Identities=25% Similarity=0.433 Sum_probs=150.7
Q ss_pred EEEEEEEeeCCCCCCcceeeeeeecC-CCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeeccEEEEEEeeCCEEEEEE
Q 029997 3 ITALLVLKCNPDGSDPVVLATAMDVS-HFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCVMGF 81 (184)
Q Consensus 3 i~~~~v~r~~~~~~d~~~L~~~~d~~-~~~~~~r~~~ke~~~~i~~~il~~i~~~~k~~~~~~~~~~h~l~~~~~~~~~v 81 (184)
|.+++|+|. .|++||++.+|.+ ..+... ...+.+++.+.+++.+..| +|+|++.|.|.|||+++.|+||+|+
T Consensus 2 i~~T~I~RV----~DGLPLa~s~d~~e~~~~s~-~e~r~q~K~L~kkLs~~s~--~r~Sietg~f~fHfli~~~Vcylvi 74 (216)
T KOG0862|consen 2 ILLTLIARV----RDGLPLAASTDDNEQSGDSL-LEYRQQAKSLFKKLSQQSP--TRCSIETGPFVFHFLIESGVCYLVI 74 (216)
T ss_pred ceeEEEEEe----cCCcccccccCcccCCCchH-HHHHHHHHHHHHhccCCCC--cccccccCCeEEEEEecCCEEEEEE
Confidence 578899998 8999999999943 233332 4477777777777776654 6999999999999999999999999
Q ss_pred ecCCCChHHHHHHHHHHHHHHHhhcccchhhhhcCCCCCchHHHHHHhh----cCCChhhHHHHHHHHHHHHHHHHHHHh
Q 029997 82 MDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNK----YQDPAEADKLLKIQRELDETKIILHKT 157 (184)
Q Consensus 82 td~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~~~~~~~~~~l~~~m~~----y~~~~~~d~l~~i~~~l~evk~im~~N 157 (184)
||..||+.+||.||+++.++|.+.|+..... ++.+|+.+..|+.+|++ |||++..+++.++++++.+|+.+|.+|
T Consensus 75 cd~~yP~kLAF~YLedL~~EF~~~~~~~~~~-~~~RPY~FieFD~~IQk~Kk~ynd~r~~~n~~~~n~el~~v~~im~~n 153 (216)
T KOG0862|consen 75 CDKSYPRKLAFSYLEDLAQEFDKSYGKNIIQ-PASRPYAFIEFDTFIQKTKKRYNDTRSQRNLLKLNQELQDVQRIMVEN 153 (216)
T ss_pred ecCCCcHHHHHHHHHHHHHHHHHhcccccCC-ccCCCeeEEehhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999877433 12488888888888875 999998899999999999999999999
Q ss_pred HHHHHhchhchHHHHHhhHHhhhhhcC
Q 029997 158 IDSVLARGEKLDSLVEKSSDLSAASQT 184 (184)
Q Consensus 158 i~~iL~Rge~Le~L~~ks~~L~~~sk~ 184 (184)
|+.+|.|||.|+.|.+++.+|+..|++
T Consensus 154 iedvl~rg~~l~~l~~~~s~l~~~s~~ 180 (216)
T KOG0862|consen 154 LEDVLQRGEVLNALSSMASELSSESRK 180 (216)
T ss_pred HHHHHhhchHHHhhhhhhhcccHHHHh
Confidence 999999999999999999999988864
No 4
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.97 E-value=2.4e-30 Score=194.09 Aligned_cols=172 Identities=32% Similarity=0.470 Sum_probs=150.9
Q ss_pred CeEEEEEEEeeCCCCCCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeeccEEEEEEeeC-CEEEE
Q 029997 1 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCVM 79 (184)
Q Consensus 1 M~i~~~~v~r~~~~~~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~~~k~~~~~~~~~~h~l~~~-~~~~~ 79 (184)
|+++++.+... .+...|+.+.+.+++++|+|..+++.+.+++..+.+ +.+++.++|.||++..+ |++|+
T Consensus 1 i~s~~~~~~~~----~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~------~~~ies~~~~~~~~~~s~gi~y~ 70 (190)
T COG5143 1 IASISLFRVKG----EPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSAS------RASIESGDYFFHYLKMSSGIVYV 70 (190)
T ss_pred CceEEEEeecC----CcceeeccccccCcccccccchHHHHHHHhcccccc------hhccccCceEEEEEecCCCceeE
Confidence 45555555553 688999999999999999999999998888776665 78899999999999995 99999
Q ss_pred EEecCCCChHHHHHHHHHHHHHHHhhcccc-hhhhhcCCCCCchHHHHHHhh-cCCChhhHHHHHHHHHHHHHHHHHHHh
Q 029997 80 GFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRTAQADNMQPWPYLNEALNK-YQDPAEADKLLKIQRELDETKIILHKT 157 (184)
Q Consensus 80 ~vtd~~~~~~~af~fL~ei~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~m~~-y~~~~~~d~l~~i~~~l~evk~im~~N 157 (184)
|+|+++||.++||.+++++..+|...++.. +.+. ..++.+..++..+++ |++|...|++.+++.+++|||++|++|
T Consensus 71 ~~~~~e~p~~la~~~~~~~~~~~~~s~~~~~~~d~--~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ 148 (190)
T COG5143 71 PISDKEYPNKLAYGYLNSIATEFLKSSALEQLIDD--TVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKN 148 (190)
T ss_pred EecccccchhhhhHHHHhhccHhhhhhhHhhcccC--ccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998776544 3321 245677899999999 999999999999999999999999999
Q ss_pred HHHHHhchhchHHHHHhhHHhhhhhcC
Q 029997 158 IDSVLARGEKLDSLVEKSSDLSAASQT 184 (184)
Q Consensus 158 i~~iL~Rge~Le~L~~ks~~L~~~sk~ 184 (184)
|+++|.|||+|+.|+++|+.|..+|+|
T Consensus 149 ie~~l~R~ekl~~lv~~ss~L~~~s~~ 175 (190)
T COG5143 149 IEKVLYRDEKLDLLVDLSSILLLSSKM 175 (190)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998875
No 5
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=99.78 E-value=2.7e-18 Score=115.03 Aligned_cols=79 Identities=25% Similarity=0.536 Sum_probs=65.4
Q ss_pred HHHHHhccCCC-C-CceeEeeccEEEEEEeeCCEEEEEEecCCCChHHHHHHHHHHHHHHHhhccc-chhhhhcCCCCCc
Q 029997 45 VARTVGKRTPP-G-QRQSVQHEEYKVHSYNRNGLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPW 121 (184)
Q Consensus 45 i~~~il~~i~~-~-~k~~~~~~~~~~h~l~~~~~~~~~vtd~~~~~~~af~fL~ei~~~f~~~~~~-~~~~~~~~~~~~~ 121 (184)
+|++|++++++ + .|.+++.|+|.||+++.+|++|+|+||++||+|+||.||++|+++|...|+. .+.++. ++..
T Consensus 1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~---~~~~ 77 (83)
T PF13774_consen 1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSAS---PYSF 77 (83)
T ss_dssp HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTST---TTTT
T ss_pred CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccC---Ccch
Confidence 48999999995 5 7999999999999999999999999999999999999999999999999983 455443 4433
Q ss_pred hHHHH
Q 029997 122 PYLNE 126 (184)
Q Consensus 122 ~~l~~ 126 (184)
..|++
T Consensus 78 ~~F~~ 82 (83)
T PF13774_consen 78 KEFDS 82 (83)
T ss_dssp HHHHH
T ss_pred hhcCC
Confidence 55543
No 6
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.6e-14 Score=99.24 Aligned_cols=48 Identities=38% Similarity=0.598 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhhc
Q 029997 136 EADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQ 183 (184)
Q Consensus 136 ~~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~sk 183 (184)
..+++.++++||+||++||.+||+|+|||||||++|++||+.|+.+|.
T Consensus 27 ~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as 74 (116)
T KOG0860|consen 27 ANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGAS 74 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999998874
No 7
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.42 E-value=2.4e-13 Score=92.16 Aligned_cols=47 Identities=43% Similarity=0.688 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhhc
Q 029997 137 ADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQ 183 (184)
Q Consensus 137 ~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~sk 183 (184)
.|++.+++++|++|+++|.+||+++++|||+||+|++||++|+.+|+
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~ 48 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAK 48 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhH
Confidence 58999999999999999999999999999999999999999999885
No 8
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=95.06 E-value=0.93 Score=33.13 Aligned_cols=95 Identities=18% Similarity=0.293 Sum_probs=51.2
Q ss_pred EEEEEEEeeCCCCCCcceeeeeeecCC------CchhhHhhHHHHHHHHHHHHhccCCC----------CCceeEeeccE
Q 029997 3 ITALLVLKCNPDGSDPVVLATAMDVSH------FGYFQRSSVKEFILFVARTVGKRTPP----------GQRQSVQHEEY 66 (184)
Q Consensus 3 i~~~~v~r~~~~~~d~~~L~~~~d~~~------~~~~~r~~~ke~~~~i~~~il~~i~~----------~~k~~~~~~~~ 66 (184)
|+++.|+-. +.+++-...+.-.. ...-..+-.-. +-+-.+.++.++.| +.-.+++.+.|
T Consensus 1 IyslyI~nr----~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g-~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~y 75 (142)
T PF04099_consen 1 IYSLYIFNR----SGGLIYYREWNRSKNEGQPKLSSNEYKLLAG-MLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTY 75 (142)
T ss_dssp EEEEEEE-T----TS-EEEEEETSSSS--E-SSSCHHHHHHHHH-HHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-
T ss_pred CeEEEEEeC----CcceeeehhhCCCCccccCCCChhHHHHHHh-hHHHHHHHHHHhCCCCcccccccceeEEEEEeCCE
Confidence 567777775 45677666665432 11111111111 12334444455444 23567889999
Q ss_pred EEEEEee-CCEEEEEEecCCCChHHHHHHHHHHHHHHH
Q 029997 67 KVHSYNR-NGLCVMGFMDDHYPVRSSFSLLNQVLDEYQ 103 (184)
Q Consensus 67 ~~h~l~~-~~~~~~~vtd~~~~~~~af~fL~ei~~~f~ 103 (184)
.+|++-. .|+-|+++||+..+. ..-.+++.+.+-|.
T Consensus 76 klh~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~ 112 (142)
T PF04099_consen 76 KLHCFETPTGLKFVLITDPNVPS-LRDELLRIYYELYV 112 (142)
T ss_dssp EEEEEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHH
T ss_pred EEEEEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHH
Confidence 9999998 999999999999863 33445555555554
No 9
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=94.35 E-value=0.31 Score=39.50 Aligned_cols=90 Identities=16% Similarity=0.167 Sum_probs=53.3
Q ss_pred HHHHHHHHhccCCCCCceeEeeccEEEEEEeeC--CEEEEEEecCCCChHHHHHHHHHHHHHHHhhcccchhhhh---c-
Q 029997 42 ILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN--GLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQ---A- 115 (184)
Q Consensus 42 ~~~i~~~il~~i~~~~k~~~~~~~~~~h~l~~~--~~~~~~vtd~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~---~- 115 (184)
+..+++.++-. ....-.+|.+++|.+++...+ +++||||--.-..-..+=.||+.|+..|...|+....... .
T Consensus 4 in~LI~~vlle-eR~~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~l~~~~~~~~~ 82 (279)
T PF04086_consen 4 INALIRDVLLE-ERSGNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQLKQLKPNTSI 82 (279)
T ss_dssp HHHHHHHTGGG--------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHHHHSSSTHHHH
T ss_pred HHHHHHHhhee-eccCCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHHhhcccccccc
Confidence 34555665532 112446789999999998885 6999999888888878888999999999999987633111 1
Q ss_pred -CCCCCchHHHHHHhhcC
Q 029997 116 -DNMQPWPYLNEALNKYQ 132 (184)
Q Consensus 116 -~~~~~~~~l~~~m~~y~ 132 (184)
....|...|+.++....
T Consensus 83 ~~~~~Fd~~F~~~l~~~e 100 (279)
T PF04086_consen 83 NEYFDFDEEFDQLLKELE 100 (279)
T ss_dssp T-----HHHHHHHHHHHC
T ss_pred ccchhHHHHHHHHHHHHH
Confidence 12367788888887653
No 10
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=93.95 E-value=0.1 Score=37.49 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=38.0
Q ss_pred HHHHHhccCCC--C---CceeEe-eccEEEEEEee---CCEEEEEEecCCCChHHHHHHHHHHHH
Q 029997 45 VARTVGKRTPP--G---QRQSVQ-HEEYKVHSYNR---NGLCVMGFMDDHYPVRSSFSLLNQVLD 100 (184)
Q Consensus 45 i~~~il~~i~~--~---~k~~~~-~~~~~~h~l~~---~~~~~~~vtd~~~~~~~af~fL~ei~~ 100 (184)
|-..+++++-| | +|+|.. .++|-++|-.+ ++-+++|.+..+.|+-+|...|.|++.
T Consensus 46 i~dmVlPkVV~v~GNKVTK~S~~lIDGyDCYYTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK~ 110 (141)
T PF09426_consen 46 IHDMVLPKVVPVEGNKVTKMSMHLIDGYDCYYTTEDNDDNKVLVCFTRVDVPKILPIRLLSELKG 110 (141)
T ss_dssp HHHTTGGG----SS-SSEE--S--SSSEEEEE---SS-TTEEEEEEEETTS-SSHHHHHHHHHTT
T ss_pred HhhccccceEEccCCeEEEEEeecccccceeeecccCCCCeEEEEEEecCCcceecHHHHHhhcc
Confidence 44555666644 3 566776 79999999883 679999999999999999999999865
No 11
>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.95 E-value=3.5 Score=29.69 Aligned_cols=94 Identities=16% Similarity=0.214 Sum_probs=66.2
Q ss_pred CeEEEEEEEeeCCCCCCcceeeeeeecCC---CchhhHhhHHHHHHHHHHHHhccCCCC----CceeEeeccEEEEEEee
Q 029997 1 MKITALLVLKCNPDGSDPVVLATAMDVSH---FGYFQRSSVKEFILFVARTVGKRTPPG----QRQSVQHEEYKVHSYNR 73 (184)
Q Consensus 1 M~i~~~~v~r~~~~~~d~~~L~~~~d~~~---~~~~~r~~~ke~~~~i~~~il~~i~~~----~k~~~~~~~~~~h~l~~ 73 (184)
|-|+...|+-. ...++...++--.. .+..+.-..-=-|-|-.|.+..++.|+ +-.++..+.|..|++..
T Consensus 1 Mtiy~~yIFdR----~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeT 76 (140)
T KOG3368|consen 1 MTIYNFYIFDR----NGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGFLSYKTSKYKLHFYET 76 (140)
T ss_pred CeEEEEEEEcC----CccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcccCeeEEeeceeEEEEEEc
Confidence 77888888876 45688888876532 232211111113457778888888764 34678899999999998
Q ss_pred -CCEEEEEEecCCCChHHHHHHHHHHHH
Q 029997 74 -NGLCVMGFMDDHYPVRSSFSLLNQVLD 100 (184)
Q Consensus 74 -~~~~~~~vtd~~~~~~~af~fL~ei~~ 100 (184)
.|+=++-.||+.... .-..|+.|-+
T Consensus 77 ptglk~vl~Tdpk~~~--ir~vLq~IYs 102 (140)
T KOG3368|consen 77 PTGLKFVLNTDPKAGS--IRDVLQYIYS 102 (140)
T ss_pred CCCcEEEEecCCCccc--HHHHHHHHHH
Confidence 999999999998766 4566776666
No 12
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=91.31 E-value=0.11 Score=39.71 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhhc
Q 029997 139 KLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQ 183 (184)
Q Consensus 139 ~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~sk 183 (184)
+...++..+++++.+|..|+++.++||++...+.|+.++|+.+++
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~ 139 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELE 139 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHH
Confidence 467888899999999999999999999999999999999887653
No 13
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=90.48 E-value=5.1 Score=28.86 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=62.0
Q ss_pred EEEEEEeeCCCCCCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeeccEEEEEEeeCCEEEEEEec
Q 029997 4 TALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCVMGFMD 83 (184)
Q Consensus 4 ~~~~v~r~~~~~~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~~~k~~~~~~~~~~h~l~~~~~~~~~vtd 83 (184)
-+++|+=. ++-.+++.+++..+ ... .+.....+.+.+..+-+ +.--.+.++++.+-|...+++.++++++
T Consensus 3 ~~i~i~n~----~G~~i~~k~y~~~~-~~~----~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~vy~~~~dl~~~~v~~ 72 (141)
T PF01217_consen 3 KAILILNS----QGKRILSKYYRDVS-EEE----RQKLFEKFIKKKSSRNS-KQSPIFEHDNYRIVYKRYSDLYFVVVGD 72 (141)
T ss_dssp EEEEEEET----TSEEEEEEESSTST-SHH----HHHHHHHHHHHHHTSSS-SSTSEEEETTEEEEEEEETTEEEEEEES
T ss_pred EEEEEEcC----CCCEEEehhcCCcc-HHH----HHHHHHHHHHHHHhccc-ccceeeecccceeeeEeeccEEEEEEee
Confidence 34555554 34467777774221 111 23444555566666632 2234466889888777779999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcc
Q 029997 84 DHYPVRSSFSLLNQVLDEYQKNFG 107 (184)
Q Consensus 84 ~~~~~~~af~fL~ei~~~f~~~~~ 107 (184)
.+...-....||..+.+.+..-++
T Consensus 73 ~~eNel~~~e~l~~~v~~l~~~~~ 96 (141)
T PF01217_consen 73 ENENELLLLEFLHRLVEVLDDYFG 96 (141)
T ss_dssp STSBHHHHHHHHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHhhhhhhhhhc
Confidence 999999999999988777766554
No 14
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=89.96 E-value=5.3 Score=28.30 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=57.9
Q ss_pred EEEEEEEeeCCCCCCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCC--CceeEeeccEEEEEEeeCCEEEEE
Q 029997 3 ITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPG--QRQSVQHEEYKVHSYNRNGLCVMG 80 (184)
Q Consensus 3 i~~~~v~r~~~~~~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~~--~k~~~~~~~~~~h~l~~~~~~~~~ 80 (184)
+.+++|.. +|++|+....+.+....-.|.++-......+.+ +.++.-+ ......+++|....+....+++..
T Consensus 17 l~~I~itD-----rDGvpi~~v~~~~~~~~~~~~~~~~tf~~a~~Q-~~KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~ 90 (119)
T PF08923_consen 17 LQAIVITD-----RDGVPIAKVSSDSAPESAMRPSLLSTFAMAIDQ-ASKLGLGKNKSIIAYYDSYQVVQFNKLPLYITF 90 (119)
T ss_dssp EEEEEEEE-----TTS-EEEEEE-TTS-GGGGSHHHHCCHHHHHHH-HTTSSS-SEEEEEEEESSEEEEEEEETTEEEEE
T ss_pred eEEEEEEC-----CCCcEEEEecCCCCcchhhhhHHHHHHHHHhhc-ccccCCCCceEEEEEeCCEEEEEEeCCCeEEEE
Confidence 46777777 589999998876542222233333222333333 4455433 334445888888777788999999
Q ss_pred EecCCCChHHHHHHHHHHHHHH
Q 029997 81 FMDDHYPVRSSFSLLNQVLDEY 102 (184)
Q Consensus 81 vtd~~~~~~~af~fL~ei~~~f 102 (184)
+|+++...-....+-+++..-+
T Consensus 91 ias~~aN~G~il~l~~~L~~~l 112 (119)
T PF08923_consen 91 IASSNANTGLILSLEEELAPIL 112 (119)
T ss_dssp EEETTS-HHHHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHhHHHHHHHH
Confidence 9999998888777777776544
No 15
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.21 E-value=13 Score=31.27 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=51.2
Q ss_pred CceeE-eeccEEEEEEeeCCEEEEEEecCCCChHHHHHHHHHHHHHHHhhcccc-hhhhhcCCCCC---chHHHHHHh
Q 029997 57 QRQSV-QHEEYKVHSYNRNGLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRTAQADNMQP---WPYLNEALN 129 (184)
Q Consensus 57 ~k~~~-~~~~~~~h~l~~~~~~~~~vtd~~~~~~~af~fL~ei~~~f~~~~~~~-~~~~~~~~~~~---~~~l~~~m~ 129 (184)
-|..+ +.|+-.||+...+++-.++||..+......|.||.++-.-+..-|+.. ..+. ...| ..-|+.+|.
T Consensus 42 ~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~eFl~kl~avm~aYfgk~~Eeai---knnf~lI~ElLDemld 116 (446)
T KOG0938|consen 42 VRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFEFLYKLDAVMNAYFGKDREEAI---KNNFVLIYELLDEMLD 116 (446)
T ss_pred cCCCeeEecceeEEEEeeccEEEEEEecCCCchhhHHHHHHHHHHHHHHHhcccchhhh---hhceEeHHHHHHHHHh
Confidence 34544 589999999999999999999999999999999999888776655532 2222 2223 355666666
No 16
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=86.79 E-value=8.8 Score=26.97 Aligned_cols=84 Identities=10% Similarity=0.151 Sum_probs=45.7
Q ss_pred HHHHHhccCCCCCceeEeeccEEEEEEee-CCEEEEEEecCCCChHHHHHHHHHHHHHHHhhcccchhhhhcCCCCCchH
Q 029997 45 VARTVGKRTPPGQRQSVQHEEYKVHSYNR-NGLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPY 123 (184)
Q Consensus 45 i~~~il~~i~~~~k~~~~~~~~~~h~l~~-~~~~~~~vtd~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~~~~~~~~~~ 123 (184)
|+.++..-..+..+.....+++..|++.. .|.-|+.++.+. +...+|+ |+.+...|. .|....+.-....|.....
T Consensus 46 I~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kFV~~~~k~-t~na~~q-l~kiY~lYs-dYV~knPfys~EMPI~c~l 122 (134)
T COG5122 46 ILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKFVFVAEKR-TVNALFQ-LQKIYSLYS-DYVTKNPFYSPEMPIQCSL 122 (134)
T ss_pred hhhhcccCCCCCceEEEEeccEEEEEEEecCCcEEEEEecCC-chhHHHH-HHHHHHHHH-HHhhcCCCCCcccceehhh
Confidence 34444432223467888899999999988 899999999443 3334454 444444443 2222111111123444455
Q ss_pred HHHHHhhc
Q 029997 124 LNEALNKY 131 (184)
Q Consensus 124 l~~~m~~y 131 (184)
++..+++|
T Consensus 123 Fde~lkrm 130 (134)
T COG5122 123 FDEHLKRM 130 (134)
T ss_pred hhHHHHHH
Confidence 55555544
No 17
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.06 E-value=13 Score=28.16 Aligned_cols=44 Identities=14% Similarity=0.326 Sum_probs=36.6
Q ss_pred ceeEeeccEEEEEEee-CCEEEEEEecCCCChHHHHHHHHHHHHHHH
Q 029997 58 RQSVQHEEYKVHSYNR-NGLCVMGFMDDHYPVRSSFSLLNQVLDEYQ 103 (184)
Q Consensus 58 k~~~~~~~~~~h~l~~-~~~~~~~vtd~~~~~~~af~fL~ei~~~f~ 103 (184)
....+.+.+..|++.. .|+-|+++|++.. ..|=.+|+.|...|.
T Consensus 123 ie~LetdtF~l~~~QTlTG~KFVvis~~~~--~~aD~lLrKiYelYs 167 (199)
T KOG3369|consen 123 IEVLETDTFTLHIFQTLTGTKFVVIAEPGT--QGADSLLRKIYELYS 167 (199)
T ss_pred eEEEEeccEEEEEEEccCCcEEEEEecCCc--hhHHHHHHHHHHHHH
Confidence 3556789999999998 9999999999987 447788888877774
No 18
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=71.36 E-value=14 Score=27.94 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhh
Q 029997 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAAS 182 (184)
Q Consensus 138 d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~s 182 (184)
.....+..++++++.-|.+.|+++=..=++||.+..++..|...+
T Consensus 109 ~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa 153 (171)
T PF04799_consen 109 STFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKA 153 (171)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466889999999999999999999999999999999999988654
No 19
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=65.62 E-value=58 Score=26.06 Aligned_cols=53 Identities=26% Similarity=0.359 Sum_probs=25.3
Q ss_pred hHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhh
Q 029997 122 PYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS 179 (184)
Q Consensus 122 ~~l~~~m~~y~~~~~~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~ 179 (184)
+.+...+..|+ +++..++.-|++..+...+--+.--.+...|+++..|-+.++
T Consensus 181 ~~i~~~L~~~~-----~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~ 233 (264)
T PF06008_consen 181 EAIRDDLNDYN-----AKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELS 233 (264)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 355555555555544444444444444445555554444444
No 20
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.65 E-value=82 Score=28.11 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=56.1
Q ss_pred CcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeeccEEEEEEeeC--CEEEEEEecCCCChHHHHHH
Q 029997 17 DPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN--GLCVMGFMDDHYPVRSSFSL 94 (184)
Q Consensus 17 d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~~~k~~~~~~~~~~h~l~~~--~~~~~~vtd~~~~~~~af~f 94 (184)
.+++|-.+...+. +|.. .+.+++ -..++++ .+.--+++++.|+.-|--++ +++|+|+-.+-..-..+-.|
T Consensus 11 gG~vLw~~~~~~~--~~~~-~in~lI---~~~ll~e--r~~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv~~l 82 (587)
T KOG0781|consen 11 GGLVLWCYQEVGD--NLKG-PINALI---RSVLLSE--RGGVNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYVDKL 82 (587)
T ss_pred CcEEEEEecccch--hccc-hHHHHH---HHHHHHh--hcCcccCchhheeEeeeecCCccEEEEEEEeccchhhhHHHH
Confidence 5789988887652 3322 233332 2222322 12223377888888877774 69999998888887888899
Q ss_pred HHHHHHHHHhhcc
Q 029997 95 LNQVLDEYQKNFG 107 (184)
Q Consensus 95 L~ei~~~f~~~~~ 107 (184)
|+++.+.|...|.
T Consensus 83 l~~v~~~f~e~~~ 95 (587)
T KOG0781|consen 83 LNDVLNLFREKYD 95 (587)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998885
No 21
>smart00096 UTG Uteroglobin.
Probab=57.53 E-value=24 Score=22.49 Aligned_cols=43 Identities=7% Similarity=0.111 Sum_probs=30.6
Q ss_pred hHHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 029997 122 PYLNEALNKYQDP-AEADKLLKIQRELDETKIILHKTIDSVLAR 164 (184)
Q Consensus 122 ~~l~~~m~~y~~~-~~~d~l~~i~~~l~evk~im~~Ni~~iL~R 164 (184)
..+...+++|+.+ .-.+...++++-+|....-=..||-++|++
T Consensus 19 ~~Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~k 62 (69)
T smart00096 19 SSYEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEK 62 (69)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4577788889865 446788888888887666666666666653
No 22
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=57.00 E-value=17 Score=22.73 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=30.9
Q ss_pred chHHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 029997 121 WPYLNEALNKYQDP-AEADKLLKIQRELDETKIILHKTIDSVLAR 164 (184)
Q Consensus 121 ~~~l~~~m~~y~~~-~~~d~l~~i~~~l~evk~im~~Ni~~iL~R 164 (184)
...++..+++|+.+ .......++++-++..-.-=..||.++|++
T Consensus 16 ~~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~~ 60 (67)
T PF01099_consen 16 PEEYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLEK 60 (67)
T ss_dssp HHHHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 36788889999865 456788888888887777777777777753
No 23
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=50.91 E-value=36 Score=21.21 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=31.4
Q ss_pred chHHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 029997 121 WPYLNEALNKYQDP-AEADKLLKIQRELDETKIILHKTIDSVLA 163 (184)
Q Consensus 121 ~~~l~~~m~~y~~~-~~~d~l~~i~~~l~evk~im~~Ni~~iL~ 163 (184)
...+...+++|+.+ .......++|+-+++...-=..|+-++|+
T Consensus 16 ~~~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~ 59 (67)
T cd00633 16 EEEYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59 (67)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Confidence 35788888999855 45678888888888776666666666654
No 24
>PHA03011 hypothetical protein; Provisional
Probab=48.52 E-value=75 Score=21.83 Aligned_cols=57 Identities=25% Similarity=0.391 Sum_probs=44.4
Q ss_pred chHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhh
Q 029997 121 WPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS 179 (184)
Q Consensus 121 ~~~l~~~m~~y~~~~~~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~ 179 (184)
...++++.-+||.- .|...-+.+++.+...+..+|.|.+.-=...+|.|.+.-.+++
T Consensus 63 ~e~ldeL~~qYN~L--~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~s 119 (120)
T PHA03011 63 IEILDELIAQYNEL--LDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANLS 119 (120)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhccC
Confidence 35677777788853 4788888999999999999999998887777887776665553
No 25
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=48.17 E-value=62 Score=24.69 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=30.5
Q ss_pred CchHHHHHHhhcC----CChhhHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 029997 120 PWPYLNEALNKYQ----DPAEADKLLKIQRELDETKIILHKTIDSVLAR 164 (184)
Q Consensus 120 ~~~~l~~~m~~y~----~~~~~d~l~~i~~~l~evk~im~~Ni~~iL~R 164 (184)
.-|...+++++|. .|...+.+.+..++++++-+.+.+++++.+++
T Consensus 134 yLp~~~~l~~kY~~l~~~~~~~~~~~~~l~e~~~~L~~l~~~f~~~~~~ 182 (199)
T PF10112_consen 134 YLPTAVKLLEKYAELESQPVKSEEIKQSLEEIEETLDTLNQAFEKDLDK 182 (199)
T ss_pred HhhHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777777774 45445667777777777777777777766654
No 26
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.99 E-value=8.6 Score=37.01 Aligned_cols=30 Identities=20% Similarity=0.489 Sum_probs=25.1
Q ss_pred HHHhHHHHHhchhchHHHHHhhHHhhhhhc
Q 029997 154 LHKTIDSVLARGEKLDSLVEKSSDLSAASQ 183 (184)
Q Consensus 154 m~~Ni~~iL~Rge~Le~L~~ks~~L~~~sk 183 (184)
...=-+.+++|||+|+.++++|++|+++++
T Consensus 943 ~~~a~~~l~e~~erL~~~e~~t~~~~~sa~ 972 (993)
T KOG1983|consen 943 ASGALQPLNERGERLSRLEERTAEMANSAK 972 (993)
T ss_pred hhhcchhhHhhccccchHHHHHHHhhccHH
Confidence 334456788999999999999999998875
No 27
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.39 E-value=58 Score=26.52 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhh
Q 029997 137 ADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAAS 182 (184)
Q Consensus 137 ~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~s 182 (184)
...+.+|+.+|-||.+|+.+==..|=+-|+.+|++.+.-++.+...
T Consensus 179 ~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nv 224 (269)
T KOG0811|consen 179 EQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNV 224 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Confidence 4688999999999999999988888899999999998888877654
No 28
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=46.50 E-value=63 Score=19.34 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhh
Q 029997 137 ADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS 179 (184)
Q Consensus 137 ~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~ 179 (184)
.+.|..|...|.++++++.+==+.|-+-|+-|+.|.+..+.-.
T Consensus 3 d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~ 45 (63)
T PF05739_consen 3 DEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRAN 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHH
Confidence 3567888888888888887777777777888888877666543
No 29
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=45.48 E-value=2e+02 Score=24.83 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=42.3
Q ss_pred CCceeEeeccEEEEEEeeCCEEEEEEecCCCChHHHHHHHHHHHHHHHhhcc
Q 029997 56 GQRQSVQHEEYKVHSYNRNGLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFG 107 (184)
Q Consensus 56 ~~k~~~~~~~~~~h~l~~~~~~~~~vtd~~~~~~~af~fL~ei~~~f~~~~~ 107 (184)
+.=.++..|+..|.++.+..+.++||+...-|......-|+-+.....+...
T Consensus 53 d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~qL~~ly~qils~lt 104 (415)
T PF03164_consen 53 DELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRKQLDYLYSQILSILT 104 (415)
T ss_pred CcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHHHHHHHHHHHHHhcc
Confidence 3446788999999999999999999999999988777888777766655443
No 30
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=44.32 E-value=80 Score=22.42 Aligned_cols=91 Identities=15% Similarity=0.175 Sum_probs=47.9
Q ss_pred CCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCC-C--CC---ceeEeeccEEEEEEee-CCEEEEEEec---CC
Q 029997 16 SDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTP-P--GQ---RQSVQHEEYKVHSYNR-NGLCVMGFMD---DH 85 (184)
Q Consensus 16 ~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~-~--~~---k~~~~~~~~~~h~l~~-~~~~~~~vtd---~~ 85 (184)
..|+.+.+....+....-.....-..+...|-.+++..- . +. +.....++|..+-++. .++=|+.+++ ..
T Consensus 6 n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~~~~~~ 85 (132)
T PF04628_consen 6 NNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHDMSDNS 85 (132)
T ss_dssp S-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEECGGG-S
T ss_pred CcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEecccCC
Confidence 355665555544422200001113344455555555321 1 11 3455678888888877 7788888887 45
Q ss_pred CChHHHHHHHHHHHHHHHhhc
Q 029997 86 YPVRSSFSLLNQVLDEYQKNF 106 (184)
Q Consensus 86 ~~~~~af~fL~ei~~~f~~~~ 106 (184)
....-.-.|..+|+..|....
T Consensus 86 ~~d~~ik~fF~~vh~~Y~~~~ 106 (132)
T PF04628_consen 86 IRDEDIKQFFKEVHELYVKAL 106 (132)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHc
Confidence 666678888888888887654
No 31
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=42.16 E-value=60 Score=18.94 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhchh
Q 029997 140 LLKIQRELDETKIILHKTIDSVLARGE 166 (184)
Q Consensus 140 l~~i~~~l~evk~im~~Ni~~iL~Rge 166 (184)
..+|+.+|+.++.-|..+++.+-.|=.
T Consensus 5 ~~~ie~dIe~tR~~La~tvd~L~~r~~ 31 (49)
T PF12277_consen 5 PDEIERDIERTRAELAETVDELAARLS 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 578999999999999999999887754
No 32
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=42.03 E-value=85 Score=20.77 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhh
Q 029997 143 IQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS 179 (184)
Q Consensus 143 i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~ 179 (184)
+-+.+..++..|.+.+++- ...++.|.+.|+.|.
T Consensus 6 vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~ 39 (92)
T PF03908_consen 6 VTESLRRTRQMMAQEVERS---ELTLQTLEESSATLR 39 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHH
Confidence 4445555555665555543 334555555555554
No 33
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=41.07 E-value=70 Score=21.97 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=27.0
Q ss_pred hHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 029997 122 PYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLAR 164 (184)
Q Consensus 122 ~~l~~~m~~y~~~~~~d~l~~i~~~l~evk~im~~Ni~~iL~R 164 (184)
..+.....+|+ -.+.+.+...++..-+.-+.+|+..++.+
T Consensus 23 ~~l~~Wa~~~~---v~~~~~~f~~~~~~~~~~~~~~~~~vi~~ 62 (113)
T PF02520_consen 23 EQLDEWAEKYG---VQDQYNEFKAQVQAQKEEVRKNVTAVISN 62 (113)
T ss_pred HHHHHHHHHCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555 34677777777777777777777777665
No 34
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.60 E-value=1.4e+02 Score=25.59 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=33.5
Q ss_pred ccEEEEEEeeCCEEEEEEecCCCChHHHHHHHHHHHHHHHhhccc
Q 029997 64 EEYKVHSYNRNGLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE 108 (184)
Q Consensus 64 ~~~~~h~l~~~~~~~~~vtd~~~~~~~af~fL~ei~~~f~~~~~~ 108 (184)
..|.++-..++++.+++++.-+.|-=.++.||..|.+-|..-|+.
T Consensus 53 p~hylfsv~~~~i~~~~~st~e~pPL~~iefL~rv~dv~~eyFg~ 97 (418)
T KOG2740|consen 53 PHHYLFSVYRDLIFFCAVSTVETPPLMVIEFLHRVVDVLLEYFGG 97 (418)
T ss_pred CceeeeeeeccCcEEEEEEeccCCChhHHHHHHHHHHHHHHHhcc
Confidence 344444445577777777777888888999999999988776663
No 35
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=39.44 E-value=59 Score=19.66 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhh
Q 029997 140 LLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAAS 182 (184)
Q Consensus 140 l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~s 182 (184)
+.+++...+.+-+-+..=||. =|.|||+|+..-.+|..+|
T Consensus 12 L~qmq~kFq~mS~~I~~riDe---M~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 12 LQQMQDKFQTMSDQILGRIDE---MSSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHCCHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhc
Confidence 344444444444444333443 3667778777777776665
No 36
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=38.04 E-value=55 Score=25.10 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=44.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcccchhhhhcCCCCCchHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 029997 83 DDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVL 162 (184)
Q Consensus 83 d~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~~~~~~~~~~l~~~m~~y~~~~~~d~l~~i~~~l~evk~im~~Ni~~iL 162 (184)
+-+|.+.+--..|.|.++.-....... ..+..-..++.....|.+|.=.+.+-.-+.+..+.-.-+.+.++++|
T Consensus 108 ~fTfD~~~L~~~L~ec~~~L~~lv~~H------LT~KS~~Ri~~vF~~f~~~efL~~lf~~~~~~~~~L~~i~~~Lnkll 181 (186)
T PF05527_consen 108 DFTFDRNYLSKLLKECRDLLHQLVEPH------LTPKSHGRIDHVFNFFSDPEFLDALFSPDEEYRDHLGKICDGLNKLL 181 (186)
T ss_dssp TS---HHHHHHHHHHHHHHHHHHHTTT------S-HHHHHHHHHHHHHHT-HHHHHHHTSG--GGHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHh------CChhhHHHHHHHHHhhCChHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 444555555555555555443332111 01222346777777788876666665556778888888899999999
Q ss_pred hchh
Q 029997 163 ARGE 166 (184)
Q Consensus 163 ~Rge 166 (184)
++|.
T Consensus 182 d~g~ 185 (186)
T PF05527_consen 182 DEGS 185 (186)
T ss_dssp HTT-
T ss_pred hCCC
Confidence 9995
No 37
>PHA02557 22 prohead core protein; Provisional
Probab=36.99 E-value=1.3e+02 Score=24.41 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhhcccch-hhhhcC-CCCCchHHHHHHhhcC--CC-hhhHHHHHHHHHHHHHHHHHHHhHHHHHhch
Q 029997 91 SFSLLNQVLDEYQKNFGESW-RTAQAD-NMQPWPYLNEALNKYQ--DP-AEADKLLKIQRELDETKIILHKTIDSVLARG 165 (184)
Q Consensus 91 af~fL~ei~~~f~~~~~~~~-~~~~~~-~~~~~~~l~~~m~~y~--~~-~~~d~l~~i~~~l~evk~im~~Ni~~iL~Rg 165 (184)
+=.||+.+-.+|...-...+ ...++. .-.|..-|+.+....| =| ...|.+..+..+|++-+.-...-++...++.
T Consensus 89 vd~~l~~~~~eW~~ENk~Av~~~IKaem~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~ 168 (271)
T PHA02557 89 ADKYLDHLAKEWLAENKLAVDRGIKAELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVALE 168 (271)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688888888876432221 111111 1234466777766644 23 3568999999999999999999998888888
Q ss_pred hchHHH------HHhhHHhhhh
Q 029997 166 EKLDSL------VEKSSDLSAA 181 (184)
Q Consensus 166 e~Le~L------~~ks~~L~~~ 181 (184)
+.++.+ .+.|.+|.++
T Consensus 169 e~i~~~~r~~i~~e~t~gLtds 190 (271)
T PHA02557 169 EYINEVKREVILSEVTKDLTES 190 (271)
T ss_pred HHHHHHHHHHHHHHHHcchhHH
Confidence 887765 4556666554
No 38
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=36.33 E-value=56 Score=23.65 Aligned_cols=35 Identities=14% Similarity=0.390 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH---hHHHHHhchhchHHH
Q 029997 137 ADKLLKIQRELDETKIILHK---TIDSVLARGEKLDSL 171 (184)
Q Consensus 137 ~d~l~~i~~~l~evk~im~~---Ni~~iL~Rge~Le~L 171 (184)
..++..+++.|.+.+..+.. .+.++..|+.+...+
T Consensus 85 q~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~m 122 (142)
T PF04048_consen 85 QERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEM 122 (142)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 35666666666666666543 244444444443333
No 39
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=36.14 E-value=58 Score=22.66 Aligned_cols=63 Identities=10% Similarity=0.123 Sum_probs=31.8
Q ss_pred EEEEEEeeCCCCCCcceeeeeeecCC-C-chhhHhhHHHHHHHHHHHHhccCCC-C-CceeEeeccEEEEE
Q 029997 4 TALLVLKCNPDGSDPVVLATAMDVSH-F-GYFQRSSVKEFILFVARTVGKRTPP-G-QRQSVQHEEYKVHS 70 (184)
Q Consensus 4 ~~~~v~r~~~~~~d~~~L~~~~d~~~-~-~~~~r~~~ke~~~~i~~~il~~i~~-~-~k~~~~~~~~~~h~ 70 (184)
+|+-|+.. .++..|++++..+. + +......-.+.+..+...+.++... + +...++.++|.||=
T Consensus 27 iyaQvidd----~~g~tlasaST~ek~~~~~~~~~~n~~aA~~vG~lla~ra~~~gi~~vvfDrgg~~yhG 93 (109)
T CHL00139 27 IYAQIIDD----TNGKTLVACSTLEPDVKSSLSSTSTCDASKLVGQKLAKKSLKKGITKVVFDRGGKLYHG 93 (109)
T ss_pred EEEEEEEC----CCCCEEEEEecCchhhhccccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCccch
Confidence 45656653 23466666654321 1 1111111223344455555554432 4 56788888888873
No 40
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=35.22 E-value=62 Score=22.75 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=31.6
Q ss_pred EEEEEEeeCCCCCCcceeeeeeecCC-CchhhHhhHHHHHHHHHHHHhccCCC-C-CceeEeeccEEEEE
Q 029997 4 TALLVLKCNPDGSDPVVLATAMDVSH-FGYFQRSSVKEFILFVARTVGKRTPP-G-QRQSVQHEEYKVHS 70 (184)
Q Consensus 4 ~~~~v~r~~~~~~d~~~L~~~~d~~~-~~~~~r~~~ke~~~~i~~~il~~i~~-~-~k~~~~~~~~~~h~ 70 (184)
+|+-|+.. .....|++++..+- +. ...-.+....+...+.++... + ++..|+.++|.||=
T Consensus 36 iyaQiIdd----~~~~tlasaST~ek~~~---~~~n~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhG 98 (114)
T TIGR00060 36 IYAQVIDD----SKSEVLASASTLEKKLK---YTGNKDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHG 98 (114)
T ss_pred EEEEEEEC----CCCEEEEEEecchhhhc---CCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchH
Confidence 45555543 34566666664431 21 111123334455555555432 4 56788899999984
No 41
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=34.75 E-value=41 Score=18.51 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=14.0
Q ss_pred HHHHHHHHhHHHHHhchhc
Q 029997 149 ETKIILHKTIDSVLARGEK 167 (184)
Q Consensus 149 evk~im~~Ni~~iL~Rge~ 167 (184)
--++-+...||..|++|++
T Consensus 9 ~~~~~L~~~ID~ALd~~D~ 27 (37)
T PF08858_consen 9 FRKEQLLELIDEALDNRDK 27 (37)
T ss_dssp HHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHcCCH
Confidence 3456677889999999875
No 42
>PHA03386 P10 fibrous body protein; Provisional
Probab=34.13 E-value=95 Score=20.97 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q 029997 138 DKLLKIQRELDETKI 152 (184)
Q Consensus 138 d~l~~i~~~l~evk~ 152 (184)
+|++.+|.+|++++.
T Consensus 19 ~KVdaLQ~qV~dv~~ 33 (94)
T PHA03386 19 TKVDALQTQLNGLEE 33 (94)
T ss_pred hHHHHHHHHHHHHHh
Confidence 566666666666653
No 43
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=33.83 E-value=2.1e+02 Score=23.62 Aligned_cols=90 Identities=13% Similarity=0.153 Sum_probs=54.0
Q ss_pred CCCCCCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeeccEEE-------------EEEeeCCEEE
Q 029997 12 NPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKV-------------HSYNRNGLCV 78 (184)
Q Consensus 12 ~~~~~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~~~k~~~~~~~~~~-------------h~l~~~~~~~ 78 (184)
++-++.++..|+....+.+..-...++++++...+..+-++-+.+ +...-...|+= ..+...+++-
T Consensus 39 Gti~rGGCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~-kyiaYFQ~~TNTyApvevLre~ye~aL~~~~VVG 117 (312)
T COG1242 39 GTIGRGGCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWKRG-KYIAYFQAYTNTYAPVEVLREMYEQALSEAGVVG 117 (312)
T ss_pred CcccCCceeeecCCCCCccccCcccCHHHHHHHHHHHHHHhhcCC-cEEEEEeccccccCcHHHHHHHHHHHhCcCCeeE
Confidence 334467889987666554333334578888877777777776543 22211211111 1144568888
Q ss_pred EEEe-cCCCChHHHHHHHHHHHHHH
Q 029997 79 MGFM-DDHYPVRSSFSLLNQVLDEY 102 (184)
Q Consensus 79 ~~vt-d~~~~~~~af~fL~ei~~~f 102 (184)
+||. .|++-..-...+|+|..+++
T Consensus 118 LsIgTRPDClpd~VldlL~e~~~r~ 142 (312)
T COG1242 118 LSIGTRPDCLPDDVLDLLAEYNKRY 142 (312)
T ss_pred EeecCCCCCCcHHHHHHHHHHhhhe
Confidence 8775 56775556688888877664
No 44
>PLN03223 Polycystin cation channel protein; Provisional
Probab=32.78 E-value=1.1e+02 Score=30.82 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhh
Q 029997 136 EADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSA 180 (184)
Q Consensus 136 ~~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~ 180 (184)
..|.|.+-++.|-+++.-+.++=-++++|.++|.++++|-.+|..
T Consensus 1579 e~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~ 1623 (1634)
T PLN03223 1579 EVDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLEN 1623 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 356788888889999999999999999999999999999877754
No 45
>PHA01811 hypothetical protein
Probab=31.63 E-value=62 Score=20.24 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=15.5
Q ss_pred CCCceeEeeccEEEEEEeeC
Q 029997 55 PGQRQSVQHEEYKVHSYNRN 74 (184)
Q Consensus 55 ~~~k~~~~~~~~~~h~l~~~ 74 (184)
++.-.+....+|.+||+-++
T Consensus 3 ~ddivtlrvkgyi~hyldd~ 22 (78)
T PHA01811 3 VDDIVTLRVKGYILHYLDDD 22 (78)
T ss_pred cccEEEEEEeeEEEEEEcCc
Confidence 44556778899999999874
No 46
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=31.28 E-value=69 Score=24.96 Aligned_cols=32 Identities=13% Similarity=0.303 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhccCCC-C-CceeEeeccEEEEEE
Q 029997 40 EFILFVARTVGKRTPP-G-QRQSVQHEEYKVHSY 71 (184)
Q Consensus 40 e~~~~i~~~il~~i~~-~-~k~~~~~~~~~~h~l 71 (184)
+....|...|.++... + .+..|+.++|.||=-
T Consensus 163 eaA~~VGk~IAerAl~kGI~kVvFDRgGy~YHGR 196 (211)
T PTZ00032 163 KAAYELGKLIGRKALSKGISKVRFDRAHYKYAGK 196 (211)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCCCCeehhH
Confidence 3445555555555432 4 678899999999953
No 47
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=31.19 E-value=1.2e+02 Score=17.90 Aligned_cols=44 Identities=20% Similarity=0.370 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhh
Q 029997 137 ADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSA 180 (184)
Q Consensus 137 ~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~ 180 (184)
.+.+..+...+.+++++..+=-..+-+-|+-|+.+....+....
T Consensus 11 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~ 54 (66)
T smart00397 11 DEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADV 54 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46788888888888888876666666678888888777665543
No 48
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=29.92 E-value=57 Score=21.62 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhccCCCCCceeEeeccEEEEEEee--CCEEEEEEecCCC
Q 029997 39 KEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNR--NGLCVMGFMDDHY 86 (184)
Q Consensus 39 ke~~~~i~~~il~~i~~~~k~~~~~~~~~~h~l~~--~~~~~~~vtd~~~ 86 (184)
..++..+++.+.-.+|.+-|..++.++..+.-+.+ +|=.|+|.+.+.+
T Consensus 34 d~lL~~lt~~v~l~~~~~Vr~lyt~~G~~v~~l~~l~~g~~yVa~g~e~f 83 (89)
T smart00537 34 EALLQDLTEVVKLDLPHGVRKLYTLDGKKVTSLDELEDGGSYVASGTEAF 83 (89)
T ss_pred HHHHHHHhhhcccCCCCCeeEEEcCCCCEECCHHHhCcCCEEEEEcCCcc
Confidence 34455556654445554577888877766655555 7888999877643
No 49
>PF13077 DUF3909: Protein of unknown function (DUF3909)
Probab=29.56 E-value=1.3e+02 Score=19.95 Aligned_cols=37 Identities=11% Similarity=0.284 Sum_probs=21.6
Q ss_pred EeeccEEEEEEee-CCEEEEEEecCCC--ChHHHHHHHHH
Q 029997 61 VQHEEYKVHSYNR-NGLCVMGFMDDHY--PVRSSFSLLNQ 97 (184)
Q Consensus 61 ~~~~~~~~h~l~~-~~~~~~~vtd~~~--~~~~af~fL~e 97 (184)
++.++...+.-.+ +|++++.|+-..- .-+-.|+||++
T Consensus 69 ydrdgi~lym~aeidg~~~vsvsy~edalhlqelfqflee 108 (108)
T PF13077_consen 69 YDRDGIDLYMHAEIDGVCYVSVSYSEDALHLQELFQFLEE 108 (108)
T ss_pred ecccceeEEEEeeeccEEEEEEeechhhHHHHHHHHHhhC
Confidence 4445554444444 8899988764433 33446777753
No 50
>PHA02979 hypothetical protein; Provisional
Probab=28.16 E-value=1.6e+02 Score=20.78 Aligned_cols=31 Identities=10% Similarity=0.274 Sum_probs=23.6
Q ss_pred ceeEeeccEEEEEEeeCCEEEEEEecCCCCh
Q 029997 58 RQSVQHEEYKVHSYNRNGLCVMGFMDDHYPV 88 (184)
Q Consensus 58 k~~~~~~~~~~h~l~~~~~~~~~vtd~~~~~ 88 (184)
+...+..+|.|-.-....+..+|+|..+++-
T Consensus 61 ~LimD~ndYs~e~gN~SnfiiiCI~Sdd~GL 91 (140)
T PHA02979 61 KLIMDANDYSFETGNSSNFIIICICSDDCGL 91 (140)
T ss_pred eeEEecccceEEeCCcccEEEEEEecccccE
Confidence 4555677888876666789999999888764
No 51
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=27.00 E-value=2.7e+02 Score=20.83 Aligned_cols=67 Identities=10% Similarity=-0.014 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHhccCCCCCceeE-eeccEEEEEEeeCCEEEEEEecCCCChHHHHHHHHHHHHHHHhh
Q 029997 37 SVKEFILFVARTVGKRTPPGQRQSV-QHEEYKVHSYNRNGLCVMGFMDDHYPVRSSFSLLNQVLDEYQKN 105 (184)
Q Consensus 37 ~~ke~~~~i~~~il~~i~~~~k~~~-~~~~~~~h~l~~~~~~~~~vtd~~~~~~~af~fL~ei~~~f~~~ 105 (184)
++|+. +...+.+.++.-.. +-++ ...+...-+..-+++.+..++.-+-..-+..+.+++|+..+.--
T Consensus 41 svkke-kefek~l~eKt~k~-~~~Il~f~d~lV~~k~~~dv~~yiv~~meeNE~~l~q~f~~ir~Al~li 108 (187)
T COG5541 41 SVKKE-KEFEKKLAEKTAKD-RESILMFYDRLVMCKRLDDVLLYIVSPMEENEPFLGQVFDEIRAALILI 108 (187)
T ss_pred chhHH-HHHHHHHHHHhhcC-ccceeeEcceeeeeeeehhEEEEEecccccccHHHHHHHHHHHHHHHHH
Confidence 35554 44566666665432 3333 36667776766689999999988888888888888888777543
No 52
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=26.41 E-value=1.4e+02 Score=17.22 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhh
Q 029997 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS 179 (184)
Q Consensus 138 d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~ 179 (184)
+.+..+...+.+++++..+==..+-+-|+.|+.+.+..+...
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~ 47 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNAD 47 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888766544455555677777766655544
No 53
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=26.25 E-value=1.9e+02 Score=18.74 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhhc
Q 029997 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQ 183 (184)
Q Consensus 138 d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~sk 183 (184)
+.+.++++.+.+--+-+.++=+++=+=.++-+.|.+.|+....+|+
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~ 55 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAK 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4566666666666666666655555555566777777777776654
No 54
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=26.06 E-value=1.3e+02 Score=16.96 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhHHH-------HHhchhchHHHHH
Q 029997 143 IQRELDETKIILHKTIDS-------VLARGEKLDSLVE 173 (184)
Q Consensus 143 i~~~l~evk~im~~Ni~~-------iL~Rge~Le~L~~ 173 (184)
+..+|+..+..|.+-+++ +++--..||.|..
T Consensus 2 L~~~Ie~~R~~L~~~~~~~~l~~~~vl~~Sq~LD~lI~ 39 (45)
T PF09388_consen 2 LLEEIEELRQELNELAEKKGLTDPEVLELSQELDKLIN 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 456666666666665544 4444455555544
No 55
>PF15601 Imm42: Immunity protein 42
Probab=25.68 E-value=1.1e+02 Score=22.27 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.0
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHH
Q 029997 131 YQDPAEADKLLKIQRELDETKIILHK 156 (184)
Q Consensus 131 y~~~~~~d~l~~i~~~l~evk~im~~ 156 (184)
|+..-..+.+.++.+++++++.++.+
T Consensus 46 Y~g~L~~~~~~~A~~eL~~I~~~l~~ 71 (134)
T PF15601_consen 46 YRGYLRYEELEKALKELEEIRKELKK 71 (134)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 66665678999999999999998865
No 56
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=24.27 E-value=65 Score=17.59 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 029997 137 ADKLLKIQRELDETKIILH 155 (184)
Q Consensus 137 ~d~l~~i~~~l~evk~im~ 155 (184)
.|+|..|.+++.++-++|.
T Consensus 16 R~NI~~il~~m~~mpgim~ 34 (35)
T PF12579_consen 16 RDNILAILNDMNDMPGIMS 34 (35)
T ss_pred HHHHHHHHHHHHcchhhhc
Confidence 4666667777766666664
No 57
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=24.20 E-value=86 Score=25.74 Aligned_cols=26 Identities=4% Similarity=0.011 Sum_probs=21.0
Q ss_pred eccEEEEEEeeCCEEEEEEecCCCCh
Q 029997 63 HEEYKVHSYNRNGLCVMGFMDDHYPV 88 (184)
Q Consensus 63 ~~~~~~h~l~~~~~~~~~vtd~~~~~ 88 (184)
.++++|-|-..+++.+||+|+-.+-.
T Consensus 238 i~g~ly~y~~~~~v~i~c~chg~~~~ 263 (284)
T PF07897_consen 238 IEGFLYKYGKGEEVRIVCVCHGSFLS 263 (284)
T ss_pred eeEEEEEecCCCeEEEEEEecCCCCC
Confidence 45788887666899999999988755
No 58
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=24.16 E-value=1.8e+02 Score=17.66 Aligned_cols=44 Identities=27% Similarity=0.394 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhh
Q 029997 137 ADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSA 180 (184)
Q Consensus 137 ~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~ 180 (184)
.+.|.....-++++.++-.+.++.+-.-++.|.....|..++..
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~ 50 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDS 50 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888999999999999888888888888877776654
No 59
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=23.47 E-value=4e+02 Score=21.47 Aligned_cols=79 Identities=13% Similarity=0.287 Sum_probs=53.3
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcccchhhhhcCCCCCchHHHHHHhhcCCC-----hhhHHHHHHHHHHHHHH---HHHH
Q 029997 84 DHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNKYQDP-----AEADKLLKIQRELDETK---IILH 155 (184)
Q Consensus 84 ~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~~~~~~~~~~l~~~m~~y~~~-----~~~d~l~~i~~~l~evk---~im~ 155 (184)
..-|..+-|.=|+++-.+|...+..+. ..|..++.+-|.. .+..+|..+-.++.+|+ ..+.
T Consensus 65 ~~~~s~l~~~~LeeliNkWs~el~~Qe-----------~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLd 133 (254)
T KOG2196|consen 65 EPAPSSLTYKTLEELINKWSLELEEQE-----------RVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLD 133 (254)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHH
Confidence 445677889999999998877654331 2344444444422 13468888888888876 4677
Q ss_pred HhHHHHHhchhchHHHHH
Q 029997 156 KTIDSVLARGEKLDSLVE 173 (184)
Q Consensus 156 ~Ni~~iL~Rge~Le~L~~ 173 (184)
++++-|+.-...||.+.+
T Consensus 134 q~L~~I~sqQ~ELE~~L~ 151 (254)
T KOG2196|consen 134 QELEFILSQQQELEDLLD 151 (254)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888877777766544
No 60
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=23.19 E-value=2e+02 Score=18.02 Aligned_cols=12 Identities=17% Similarity=-0.020 Sum_probs=6.3
Q ss_pred CCCchHHHHHHh
Q 029997 118 MQPWPYLNEALN 129 (184)
Q Consensus 118 ~~~~~~l~~~m~ 129 (184)
|.....+++.+.
T Consensus 21 P~sG~e~R~~l~ 32 (74)
T PF12732_consen 21 PKSGKETREKLK 32 (74)
T ss_pred CCCcHHHHHHHH
Confidence 444555555553
No 61
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=22.26 E-value=3.1e+02 Score=19.82 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhch-hchHHHHHhhHHhhh
Q 029997 137 ADKLLKIQRELDETKIILHKTIDSVLARG-EKLDSLVEKSSDLSA 180 (184)
Q Consensus 137 ~d~l~~i~~~l~evk~im~~Ni~~iL~Rg-e~Le~L~~ks~~L~~ 180 (184)
..+|..++.+++++...|.+.|+.+=++- ..+..|....+.|..
T Consensus 9 l~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~ 53 (149)
T PF07352_consen 9 LRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEG 53 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788889999999999999888886553 345555555555543
No 62
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=20.77 E-value=1.2e+02 Score=20.61 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhHHHHHhchhchH
Q 029997 144 QRELDETKIILHKTIDSVLARGEKLD 169 (184)
Q Consensus 144 ~~~l~evk~im~~Ni~~iL~Rge~Le 169 (184)
+.+.+++-+.+.+.|...|.+|++++
T Consensus 19 k~~a~~~v~~~~~~i~~aL~~G~~V~ 44 (94)
T COG0776 19 KKDAEEAVDAFLEEITEALAKGERVE 44 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 44788888889999999999999875
No 63
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=20.57 E-value=1.8e+02 Score=16.41 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=18.8
Q ss_pred HHHHHHhHHHHHhchhchHHHHHhhH
Q 029997 151 KIILHKTIDSVLARGEKLDSLVEKSS 176 (184)
Q Consensus 151 k~im~~Ni~~iL~Rge~Le~L~~ks~ 176 (184)
.+.+.+|-..+|...+-++.+.++-+
T Consensus 9 eeLV~eNK~ell~d~~~me~Ieerie 34 (40)
T PF13040_consen 9 EELVRENKQELLNDKEAMEKIEERIE 34 (40)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 35667777888888887777777654
No 64
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=20.28 E-value=98 Score=20.37 Aligned_cols=27 Identities=7% Similarity=0.178 Sum_probs=19.0
Q ss_pred HHHHHHHH-HHHHHHHHHHhHHHHHhch
Q 029997 139 KLLKIQRE-LDETKIILHKTIDSVLARG 165 (184)
Q Consensus 139 ~l~~i~~~-l~evk~im~~Ni~~iL~Rg 165 (184)
.+.++.+. =.||.++|.++|..+|..-
T Consensus 14 ~~~~l~~~~s~ev~e~m~~~v~~llG~l 41 (86)
T PF05542_consen 14 RIQQLSEPASPEVLEAMKQHVSGLLGNL 41 (86)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHcCC
Confidence 33333333 4689999999999998765
No 65
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=20.08 E-value=1.6e+02 Score=25.10 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=31.9
Q ss_pred chHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHhHHH
Q 029997 121 WPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDS 160 (184)
Q Consensus 121 ~~~l~~~m~~y~~~~~~d~l~~i~~~l~evk~im~~Ni~~ 160 (184)
...+.+++.+|+..++.++|.++..+++.++.-+.+-|-.
T Consensus 140 L~av~~L~~~F~~yksi~~I~~L~~~i~~l~~~L~~qI~~ 179 (383)
T PF04100_consen 140 LQAVKELLEHFKPYKSIPQIAELSKRIDQLQNELKEQIFE 179 (383)
T ss_pred HHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888999999999999987777665544
Done!