Query 029997
Match_columns 184
No_of_seqs 123 out of 860
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 10:50:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kyq_A YKT6, synaptobrevin hom 100.0 9.8E-53 3.3E-57 323.3 9.0 180 1-183 2-183 (199)
2 2nut_C Vesicle-trafficking pro 100.0 6.3E-45 2.1E-49 280.2 11.0 173 3-184 3-180 (196)
3 4b93_A Vesicle-associated memb 100.0 9.8E-47 3.3E-51 288.5 0.8 167 1-184 2-171 (189)
4 3bw6_A Synaptobrevin homolog Y 100.0 1.9E-37 6.6E-42 227.3 15.4 137 1-139 5-144 (144)
5 4afi_A AP-3 complex subunit de 99.9 8.1E-28 2.8E-32 180.5 11.2 116 1-133 54-172 (173)
6 2vx8_A Nucleoporin-like protei 99.9 9.9E-24 3.4E-28 157.8 14.0 111 1-131 44-156 (169)
7 1gl2_A Endobrevin; membrane pr 99.7 1.3E-17 4.3E-22 105.6 4.8 51 133-183 4-54 (65)
8 3b5n_A Synaptobrevin homolog 1 99.7 1.1E-16 3.8E-21 99.9 5.7 46 138-183 2-47 (61)
9 1n7s_A Vesicle-associated memb 99.7 1E-16 3.6E-21 100.8 5.5 48 136-183 2-49 (63)
10 2nps_A VAMP-4, vesicle-associa 99.7 2.8E-17 9.7E-22 106.6 2.8 52 132-183 2-53 (74)
11 1l4a_A Synaptobrevin; snare, s 99.7 8.5E-17 2.9E-21 105.8 4.7 52 133-184 10-61 (80)
12 1sfc_A VAMP 2, protein (synapt 99.6 8.5E-16 2.9E-20 104.3 5.5 48 136-183 28-75 (96)
13 3hd7_A Vesicle-associated memb 99.6 1E-15 3.5E-20 103.0 5.6 48 136-183 3-50 (91)
14 1urq_A M-tomosyn isoform; tran 99.5 2.4E-14 8.4E-19 89.3 4.6 46 138-183 4-49 (63)
15 2kog_A Vesicle-associated memb 99.5 1.8E-15 6.3E-20 106.4 -2.2 49 135-183 30-78 (119)
16 3zym_A Phosphatidylinositol-bi 98.5 1.6E-08 5.6E-13 82.1 0.8 33 136-168 278-310 (310)
17 3fie_C Fragment of vesicle-ass 98.5 5.5E-11 1.9E-15 66.6 -10.3 31 136-166 7-37 (38)
18 2j3t_C Trafficking protein par 96.4 0.1 3.4E-06 37.3 12.0 98 1-104 1-107 (145)
19 2fz0_A R-snare NYV1P, V-snare 94.9 0.029 9.8E-07 39.4 4.0 58 43-100 48-114 (149)
20 3cue_A Transport protein parti 94.8 0.5 1.7E-05 36.0 11.0 46 59-104 120-188 (219)
21 2fh5_A Signal recognition part 94.6 0.23 7.7E-06 37.0 8.7 137 17-164 20-164 (185)
22 3cue_C Transport protein parti 93.0 0.89 3.1E-05 32.8 9.1 98 1-104 1-113 (159)
23 2j3w_A Sedlin, trafficking pro 92.9 1.7 5.8E-05 30.6 11.1 46 59-105 65-111 (142)
24 3tjz_C Coatomer subunit zeta-1 91.8 2.6 8.9E-05 30.1 11.8 92 4-106 14-105 (153)
25 1w63_Q Adapter-related protein 91.2 3 0.0001 29.8 14.3 95 3-107 2-96 (158)
26 2vgl_S AP-2 complex subunit si 90.9 3 0.0001 29.2 14.2 95 3-107 2-96 (142)
27 2j3t_D Trafficking protein par 89.0 2.2 7.6E-05 32.4 8.1 86 46-133 118-211 (219)
28 2vgl_M AP-2 complex subunit MU 84.5 16 0.00056 30.3 13.4 49 59-107 46-94 (435)
29 1w63_M Adaptor-related protein 84.2 5 0.00017 33.3 8.6 48 60-107 49-96 (423)
30 1txp_A HnRNP C, heterogeneous 75.7 2 6.7E-05 21.4 2.0 25 141-169 2-26 (28)
31 1t3j_A Mitofusin 1; coiled coi 66.1 17 0.00057 23.9 5.5 45 138-182 36-80 (96)
32 2nps_B Syntaxin 13, vesicle-as 65.9 20 0.00067 21.8 5.7 43 137-179 5-47 (71)
33 1ccd_A Clara cell 17 KD protei 63.3 10 0.00035 23.7 4.0 44 121-164 20-64 (77)
34 3b5n_B Protein SSO1; snare com 62.6 23 0.00078 21.4 5.7 42 138-179 10-51 (69)
35 1jth_B Syntaxin 1A; coiled-coi 60.2 27 0.00093 21.5 5.7 41 138-178 10-50 (77)
36 1n7s_B Syntaxin 1A; neuronal s 59.9 25 0.00087 21.1 5.7 42 138-179 12-53 (68)
37 1gl2_B Syntaxin 7; membrane pr 58.3 27 0.00092 20.8 5.7 42 138-179 9-50 (65)
38 1utg_A Uteroglobin; steroid bi 58.0 9.1 0.00031 23.5 3.0 43 122-164 19-62 (70)
39 3hd7_B Syntaxin-1A; membrane p 51.9 45 0.0015 22.0 5.9 42 138-179 21-62 (109)
40 1nhl_A Synaptosomal-associated 51.0 33 0.0011 19.6 5.0 38 143-180 5-42 (54)
41 3leq_A Uncharacterized protein 49.6 57 0.002 22.0 9.3 89 4-97 20-111 (126)
42 1sfc_B Protein (syntaxin 1A), 45.5 53 0.0018 20.5 5.7 42 138-179 21-62 (83)
43 3lcn_C MRNA transport factor G 45.1 28 0.00097 17.2 3.4 22 137-158 5-26 (29)
44 1utr_A Uteroglobin; clara cell 40.6 16 0.00054 23.8 2.2 43 122-164 40-83 (96)
45 2ygg_A Sodium/hydrogen exchang 39.8 30 0.001 21.2 3.1 22 144-165 6-27 (70)
46 1l4a_C S-SNAP25 fusion protein 35.5 83 0.0028 19.8 6.1 58 123-181 13-70 (83)
47 1j3w_A Giding PROTEIN-MGLB; gl 34.8 1.2E+02 0.0041 21.5 11.9 85 16-102 37-129 (163)
48 1n7s_C SNAP-25A; neuronal snar 34.0 84 0.0029 19.5 6.0 45 136-180 21-65 (79)
49 1zkr_A Major allergen I polype 33.2 44 0.0015 23.7 3.6 43 122-164 20-64 (153)
50 2grg_A Hypothetical protein; Y 32.3 60 0.0021 21.7 3.9 44 43-86 64-107 (120)
51 3cpt_A Mitogen-activated prote 32.3 1.3E+02 0.0044 21.1 13.5 84 16-99 46-130 (143)
52 1mg4_A Doublecortin, doublecor 26.6 36 0.0012 22.8 2.1 49 37-85 42-95 (113)
53 3k4t_A Virion-associated prote 26.5 97 0.0033 19.9 4.0 27 139-165 3-32 (95)
54 3v2d_S 50S ribosomal protein L 25.9 52 0.0018 22.0 2.8 59 4-69 35-95 (112)
55 3f4m_A Tumor necrosis factor, 25.2 1.1E+02 0.0036 22.0 4.5 76 83-166 85-160 (161)
56 2kfe_A Meucin-24; alpha-helix, 23.8 74 0.0025 15.4 2.5 20 137-156 4-23 (26)
57 2xus_A Breast cancer metastasi 22.7 45 0.0015 18.9 1.7 15 138-152 32-46 (49)
58 3r8s_O 50S ribosomal protein L 21.4 22 0.00074 24.1 0.2 62 4-69 34-99 (116)
59 2pjw_V Vacuolar protein sortin 21.3 1.7E+02 0.0058 18.7 5.1 41 137-177 32-72 (91)
60 1y4m_A HERV-FRD_6P24.1 proviru 21.1 1.2E+02 0.0042 17.4 3.4 21 137-157 6-26 (53)
No 1
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=9.8e-53 Score=323.25 Aligned_cols=180 Identities=43% Similarity=0.678 Sum_probs=168.2
Q ss_pred CeEEEEEEEeeCCCCCCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeeccEEEE-EEeeCCEEEE
Q 029997 1 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVH-SYNRNGLCVM 79 (184)
Q Consensus 1 M~i~~~~v~r~~~~~~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~~~k~~~~~~~~~~h-~l~~~~~~~~ 79 (184)
|||||++|+|+++ +++++|++++|+|+||+|+|++++|.+.|+++.++++++|++|+++++|+|.|| |+..+|++|+
T Consensus 2 mk~~~~~v~~~~~--~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl 79 (199)
T 3kyq_A 2 MKLYSLSVFYKGE--PKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGV 79 (199)
T ss_dssp CCEEEEEEEEECS--SCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEE
T ss_pred ceEEEEEEEEcCC--CCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEE
Confidence 9999999999864 689999999999999999999999999999999999999999999999999999 7777999999
Q ss_pred EEecCCCChHHHHHHHHHHHHHHHhhcccc-hhhhhcCCCCCchHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHhH
Q 029997 80 GFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTI 158 (184)
Q Consensus 80 ~vtd~~~~~~~af~fL~ei~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~m~~y~~~~~~d~l~~i~~~l~evk~im~~Ni 158 (184)
|+||++||+|+||.||++|+++|...|+.. |... +..++.++.|+++|++|+||+..|++.+++.+|+||++||++||
T Consensus 80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~-~~~~~~f~~l~~~m~~Y~dp~~~d~l~~~q~el~evk~iM~~NI 158 (199)
T 3kyq_A 80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVG-SPATIHYTALDGHLSRYQNPREADPMSKVQAELDETKIILHNTM 158 (199)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTC-CTTTCCCCTHHHHHHHTTSGGGCCCCHHHHHHHHTCCCEEESSG
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhcc-cccccccHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999854 5432 23555568999999999999999999999999999999999999
Q ss_pred HHHHhchhchHHHHHhhHHhhhhhc
Q 029997 159 DSVLARGEKLDSLVEKSSDLSAASQ 183 (184)
Q Consensus 159 ~~iL~Rge~Le~L~~ks~~L~~~sk 183 (184)
+++|+|||+||+|++||++|+++|+
T Consensus 159 ~~vl~RgekLd~L~~ks~~L~~~s~ 183 (199)
T 3kyq_A 159 ESLLERGEKLDDLVSKSEVLGTQSK 183 (199)
T ss_dssp GGTSCTTCCHHHHHHHCSSSCHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=6.3e-45 Score=280.20 Aligned_cols=173 Identities=20% Similarity=0.345 Sum_probs=111.2
Q ss_pred EEEEEEEeeCCCCCCcceeeeeeecCCC-chhhHhhHHHHHHHHHHHHhccCCC--CCceeEeeccEEEEEEeeCCEEEE
Q 029997 3 ITALLVLKCNPDGSDPVVLATAMDVSHF-GYFQRSSVKEFILFVARTVGKRTPP--GQRQSVQHEEYKVHSYNRNGLCVM 79 (184)
Q Consensus 3 i~~~~v~r~~~~~~d~~~L~~~~d~~~~-~~~~r~~~ke~~~~i~~~il~~i~~--~~k~~~~~~~~~~h~l~~~~~~~~ 79 (184)
|+|++|+|. +|++|||+++|++.+ |+ ++..+++. ++.+++++++ ++|+++++|+|.|||+.++|++|+
T Consensus 3 i~ya~IaR~----~d~~iLa~~~d~~~~~~~-~~~~~~~~----a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l 73 (196)
T 2nut_C 3 VLLTMIARV----ADGLPLAASMQEDEQSGR-DLQQYQSQ----AKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYL 73 (196)
T ss_dssp CCCEEEEET----TTCCEEEEECCCC------CHHHHHHH----HHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEE
T ss_pred eEEEEEEEc----CCCcEEEEeecccccccc-cHHHHHHH----HHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEE
Confidence 689999996 789999999998876 54 66666665 5666667764 589999999999999999999999
Q ss_pred EEecCCCChHHHHHHHHHHHHHHHhhcccchhhhh-cC-CCCCchHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHh
Q 029997 80 GFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQ-AD-NMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKT 157 (184)
Q Consensus 80 ~vtd~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~-~~-~~~~~~~l~~~m~~y~~~~~~d~l~~i~~~l~evk~im~~N 157 (184)
||||++||+++||.||++|+++|...|+..+.+.. +. .+.|.+.|+++|++|+||+..|+|.+++.+|+||++||++|
T Consensus 74 ~i~d~~yp~r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~im~~n 153 (196)
T 2nut_C 74 VLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVAN 153 (196)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTGGGHHHHHHHHTTTSCCC-----------------CCEEE
T ss_pred EEEcCCcchHHHHHHHHHHHHHHHHhccchhccccCCCchHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987654321 11 23567788888888999999999999999999999999999
Q ss_pred HHHHHhchhchHHHHHhhHHhhhhhcC
Q 029997 158 IDSVLARGEKLDSLVEKSSDLSAASQT 184 (184)
Q Consensus 158 i~~iL~Rge~Le~L~~ks~~L~~~sk~ 184 (184)
|+++|+|||+||.|++||++|+.+|++
T Consensus 154 i~~vl~Rge~l~~L~~ks~~L~~~s~~ 180 (196)
T 2nut_C 154 IEEVLQRGEALSALDSKANNLSSLSKK 180 (196)
T ss_dssp HHHHC----------------------
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999874
No 3
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=9.8e-47 Score=288.45 Aligned_cols=167 Identities=28% Similarity=0.408 Sum_probs=138.6
Q ss_pred CeEEEEEEEeeCCCCCCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCC-CCceeEeeccEEEEEEeeCCEEEE
Q 029997 1 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPP-GQRQSVQHEEYKVHSYNRNGLCVM 79 (184)
Q Consensus 1 M~i~~~~v~r~~~~~~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~-~~k~~~~~~~~~~h~l~~~~~~~~ 79 (184)
|+|+|++|+|. .+||++++..+ ++| ..+++.+|+++|+ ++|+++++|+|.|||++++|++|+
T Consensus 2 M~ilYa~VArg------~~iLae~t~~~--gnf---------~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl 64 (189)
T 4b93_A 2 MAILFAVVARG------TTILAKHAWCG--GNF---------LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYL 64 (189)
T ss_dssp CSEEEEEEEET------TEEEEEEESSE--ECH---------HHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEE
T ss_pred CceEEEEEEeC------CEEEEeCCCCC--CCH---------HHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEE
Confidence 99999999993 58999998776 677 5689999999998 479999999999999999999999
Q ss_pred EEecCCCChHHHHHHHHHHHHHHHhhcccchhhhhcC--CCCCchHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHh
Q 029997 80 GFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQAD--NMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKT 157 (184)
Q Consensus 80 ~vtd~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~~~--~~~~~~~l~~~m~~y~~~~~~d~l~~i~~~l~evk~im~~N 157 (184)
||||++||+++||.||++|+++|...|+..+.++.+. ...|.+.|+.+|++|++|+..|++.+++.+|+||++||++|
T Consensus 65 ~i~d~~yp~r~af~fL~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~im~~N 144 (189)
T 4b93_A 65 CITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRN 144 (189)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHCC-------CCHHHHHTTTTCCEEC
T ss_pred EEEcCccCHHHHHHHHHHHHHHHHhhccccccccCCccccchhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998775543322 23467889999999999999999999999999999999999
Q ss_pred HHHHHhchhchHHHHHhhHHhhhhhcC
Q 029997 158 IDSVLARGEKLDSLVEKSSDLSAASQT 184 (184)
Q Consensus 158 i~~iL~Rge~Le~L~~ks~~L~~~sk~ 184 (184)
|+++|+|||+||.|++||++|+.+|+.
T Consensus 145 i~~vl~Rge~l~~L~~ks~~L~~~s~~ 171 (189)
T 4b93_A 145 IDLVAQRGERLELLIDKTENLVDSSVT 171 (189)
T ss_dssp CCCBCTTSSBCCCCEETTCC-------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999873
No 4
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=100.00 E-value=1.9e-37 Score=227.33 Aligned_cols=137 Identities=38% Similarity=0.676 Sum_probs=121.3
Q ss_pred CeEEEEEEEeeCCCCCCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeeccEEEEEE-eeCCEEEE
Q 029997 1 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSY-NRNGLCVM 79 (184)
Q Consensus 1 M~i~~~~v~r~~~~~~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~~~k~~~~~~~~~~h~l-~~~~~~~~ 79 (184)
|||+|++|+|.++ +++++|++++|++++++|+|++++|.+.++++++++|+++++|+++++|+|+||++ +.+|++|+
T Consensus 5 Mkl~~~~v~r~~~--~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 5 MRIYYIGVFRSGG--EKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp CCEEEEEEEECCS--SSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEEECTTSEEEE
T ss_pred EEEEEEEEEecCC--CCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEEEEeCCEEEEEEEecCCEEEE
Confidence 9999999999632 46999999999999999999999999999999999999999999999999999999 66999999
Q ss_pred EEecCCCChHHHHHHHHHHHHHHHhhcccc-hhhhhcCC-CCCchHHHHHHhhcCCChhhHH
Q 029997 80 GFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRTAQADN-MQPWPYLNEALNKYQDPAEADK 139 (184)
Q Consensus 80 ~vtd~~~~~~~af~fL~ei~~~f~~~~~~~-~~~~~~~~-~~~~~~l~~~m~~y~~~~~~d~ 139 (184)
||||++||+|+||.||++|+++|...|+.. |.++.... ++.++.|+++|++|+||++.|+
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~~~~f~~l~~~i~kYqdp~~aD~ 144 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKMKQLDTYISKYQDPSQADA 144 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCGGGCCTHHHHHHHHTSCC-----
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccCCcchHHHHHHHHHhCchhhcCC
Confidence 999999999999999999999999999987 76543222 6667999999999999998775
No 5
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=99.95 E-value=8.1e-28 Score=180.55 Aligned_cols=116 Identities=23% Similarity=0.343 Sum_probs=104.0
Q ss_pred CeEEEEEEEeeCCCCCCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCC-CCceeEeeccEEEEEEeeCCEEEE
Q 029997 1 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPP-GQRQSVQHEEYKVHSYNRNGLCVM 79 (184)
Q Consensus 1 M~i~~~~v~r~~~~~~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~-~~k~~~~~~~~~~h~l~~~~~~~~ 79 (184)
|+|+|++|+|. .+||+++++.+ ++| ..+++++|+++|+ +.|+++++|+|.|||++++|++|+
T Consensus 54 M~I~Ya~VArg------~tiLAE~t~~~--gnf---------~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl 116 (173)
T 4afi_A 54 MAILFAVVARG------TTILAKHAWCG--GNF---------LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYL 116 (173)
T ss_dssp CCEEEEEEEET------TEEEEEEESSC--CCH---------HHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEE
T ss_pred ccEEEEEEECC------CEEEEEccCCC--CCH---------HHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEE
Confidence 99999999994 58999999877 677 5689999999998 589999999999999999999999
Q ss_pred EEecCCCChHHHHHHHHHHHHHHHhhcccchhhhhcC--CCCCchHHHHHHhhcCC
Q 029997 80 GFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQAD--NMQPWPYLNEALNKYQD 133 (184)
Q Consensus 80 ~vtd~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~~~--~~~~~~~l~~~m~~y~~ 133 (184)
||||++||+++||.||++|+++|...|+..|.++.+. +..|.+.|+++|++||+
T Consensus 117 ~i~D~~~~rr~aF~FLedI~~eF~~~yg~~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 117 CITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred EEECCccChhHHHHHHHHHHHHHHHHhchhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998777665433 44688999999999985
No 6
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.91 E-value=9.9e-24 Score=157.81 Aligned_cols=111 Identities=23% Similarity=0.333 Sum_probs=95.0
Q ss_pred CeEEEEEEEeeCCCCCCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCC-CCceeEeeccEEEEEEeeCCEEEE
Q 029997 1 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPP-GQRQSVQHEEYKVHSYNRNGLCVM 79 (184)
Q Consensus 1 M~i~~~~v~r~~~~~~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~-~~k~~~~~~~~~~h~l~~~~~~~~ 79 (184)
|+|+|++|+|. ++||+++++.+ ++| ..+++.+++++++ ++|+++++|+|.|||+++||++|+
T Consensus 44 M~ilYa~VaRG------~~VLae~t~~~--gnf---------~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl 106 (169)
T 2vx8_A 44 MAILFAVVARG------TTILAKHAWCG--GNF---------LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYL 106 (169)
T ss_dssp SCCCEEEEEET------TEEEEEEESSC--BSH---------HHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEE
T ss_pred CceEEEEEEcC------CEEEEEeccCC--CCH---------HHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEE
Confidence 89999999994 59999999866 566 5579999999998 689999999999999999999999
Q ss_pred EEecCCCChHHHHHHHHHHHHHHHhhcccchhhhhcCCCCCch-HHHHHHhhc
Q 029997 80 GFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWP-YLNEALNKY 131 (184)
Q Consensus 80 ~vtd~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~~~~~~~~~-~l~~~m~~y 131 (184)
||||++||+++||.||++|+++|...|+..|.++ .++.+. .|+.+|++|
T Consensus 107 ~I~D~~yp~r~AF~fLedI~~eF~~~y~~~~~~a---~pysf~~eF~~~Lk~~ 156 (169)
T 2vx8_A 107 CITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTA---LPYAMNSEFSSVLAAQ 156 (169)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHHTTGGGTC---CTTTTHHHHHHHHSCC
T ss_pred EEEccccchHHHHHHHHHHHHHHHHHhhhhhhcc---CCcchhHHHHHHHHHH
Confidence 9999999999999999999999999998776554 233333 666666554
No 7
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.70 E-value=1.3e-17 Score=105.56 Aligned_cols=51 Identities=37% Similarity=0.595 Sum_probs=44.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhhc
Q 029997 133 DPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQ 183 (184)
Q Consensus 133 ~~~~~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~sk 183 (184)
+|...|+|.+++.+|+||+.||.+||+++|+|||+||.|++||++|+.+|+
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~ 54 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSE 54 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 566789999999999999999999999999999999999999999999886
No 8
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.66 E-value=1.1e-16 Score=99.95 Aligned_cols=46 Identities=33% Similarity=0.568 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhhc
Q 029997 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQ 183 (184)
Q Consensus 138 d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~sk 183 (184)
|++.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|+
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~ 47 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQ 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999886
No 9
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.66 E-value=1e-16 Score=100.81 Aligned_cols=48 Identities=29% Similarity=0.460 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhhc
Q 029997 136 EADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQ 183 (184)
Q Consensus 136 ~~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~sk 183 (184)
+.|+|.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|+
T Consensus 2 ~~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~ 49 (63)
T 1n7s_A 2 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGAS 49 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999999999999999999999999886
No 10
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.66 E-value=2.8e-17 Score=106.58 Aligned_cols=52 Identities=33% Similarity=0.519 Sum_probs=46.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhhc
Q 029997 132 QDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQ 183 (184)
Q Consensus 132 ~~~~~~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~sk 183 (184)
++|...|+|.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|+
T Consensus 2 ~~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~ 53 (74)
T 2nps_A 2 SMGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNAT 53 (74)
T ss_dssp ----CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3566789999999999999999999999999999999999999999999886
No 11
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.65 E-value=8.5e-17 Score=105.82 Aligned_cols=52 Identities=23% Similarity=0.401 Sum_probs=48.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhhcC
Q 029997 133 DPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQT 184 (184)
Q Consensus 133 ~~~~~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~sk~ 184 (184)
+|...|+|.+++.+|+||++||.+||++||+|||+||.|++||++|+.+|+.
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~ 61 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQ 61 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTT
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999999999999999999864
No 12
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.60 E-value=8.5e-16 Score=104.25 Aligned_cols=48 Identities=29% Similarity=0.460 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhhc
Q 029997 136 EADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQ 183 (184)
Q Consensus 136 ~~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~sk 183 (184)
..|+|.+++.+|+||++||++||++||+|||+||.|++||++|+.+|+
T Consensus 28 ~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~ 75 (96)
T 1sfc_A 28 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGAS 75 (96)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999885
No 13
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.60 E-value=1e-15 Score=103.00 Aligned_cols=48 Identities=29% Similarity=0.459 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhhc
Q 029997 136 EADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQ 183 (184)
Q Consensus 136 ~~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~sk 183 (184)
+.|++.+++.+|+||++||.+||+++|+|||+||.|++||++|+++|+
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~ 50 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGAS 50 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999999999999999999999999886
No 14
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.49 E-value=2.4e-14 Score=89.32 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhhc
Q 029997 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQ 183 (184)
Q Consensus 138 d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~sk 183 (184)
.++..++.++++|++||.+||+++++|||+|+.|++||++|..+|+
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~ 49 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSAD 49 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999875
No 15
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.46 E-value=1.8e-15 Score=106.42 Aligned_cols=49 Identities=29% Similarity=0.455 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhhc
Q 029997 135 AEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQ 183 (184)
Q Consensus 135 ~~~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~sk 183 (184)
...|++.+++.+|+||++||++||+++|+|||+||.|++||++|+.+|+
T Consensus 30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~ 78 (119)
T 2kog_A 30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGAS 78 (119)
T ss_dssp SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 3469999999999999999999999999999999999999999998875
No 16
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.51 E-value=1.6e-08 Score=82.13 Aligned_cols=33 Identities=33% Similarity=0.645 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHhchhch
Q 029997 136 EADKLLKIQRELDETKIILHKTIDSVLARGEKL 168 (184)
Q Consensus 136 ~~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~L 168 (184)
..|.+.++++||+||++||.+|||++|+|||+|
T Consensus 278 p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 278 HMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 468999999999999999999999999999987
No 17
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.47 E-value=5.5e-11 Score=66.58 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHhchh
Q 029997 136 EADKLLKIQRELDETKIILHKTIDSVLARGE 166 (184)
Q Consensus 136 ~~d~l~~i~~~l~evk~im~~Ni~~iL~Rge 166 (184)
..|++.+++.+|+||++||.+||+++|+||+
T Consensus 7 ~~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 7 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred chhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 3589999999999999999999999999996
No 18
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=96.36 E-value=0.1 Score=37.31 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=61.9
Q ss_pred CeEEEEEEEeeCCCCCCcceeeeeeecC---CCchhhHhhHHHHHHHHHHHHhccCCCC----CceeEeeccEEEEEEee
Q 029997 1 MKITALLVLKCNPDGSDPVVLATAMDVS---HFGYFQRSSVKEFILFVARTVGKRTPPG----QRQSVQHEEYKVHSYNR 73 (184)
Q Consensus 1 M~i~~~~v~r~~~~~~d~~~L~~~~d~~---~~~~~~r~~~ke~~~~i~~~il~~i~~~----~k~~~~~~~~~~h~l~~ 73 (184)
|.++++.|+-. ++.++-...+.-+ ..+.-.....-..+-.-++.+.+++.|. .-.+++.++|..|++..
T Consensus 1 M~i~~~~Ii~k----~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T 76 (145)
T 2j3t_C 1 MTVHNLYLFDR----NGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYET 76 (145)
T ss_dssp -CEEEEEEECT----TSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEEC
T ss_pred CeEEEEEEEeC----CCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEc
Confidence 88999999986 4556655544322 1110111111122334455555555442 34778889999999998
Q ss_pred -CCEEEEEEecCCCChHHHHHHHHHHH-HHHHh
Q 029997 74 -NGLCVMGFMDDHYPVRSSFSLLNQVL-DEYQK 104 (184)
Q Consensus 74 -~~~~~~~vtd~~~~~~~af~fL~ei~-~~f~~ 104 (184)
.|+=|+.++|+..+. .-.||.+|. +.|..
T Consensus 77 ~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~ 107 (145)
T 2j3t_C 77 PTGIKVVMNTDLGVGP--IRDVLHHIYSALYVE 107 (145)
T ss_dssp TTSCEEEEEECTTCCC--CHHHHHHHHHTTHHH
T ss_pred CCCCEEEEEecCCcch--HHHHHHHHHHHHHHH
Confidence 899999999997655 568888888 56654
No 19
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.029 Score=39.40 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=46.4
Q ss_pred HHHHHHHhccCCC--C---CceeEe-eccEEEEEEee---CCEEEEEEecCCCChHHHHHHHHHHHH
Q 029997 43 LFVARTVGKRTPP--G---QRQSVQ-HEEYKVHSYNR---NGLCVMGFMDDHYPVRSSFSLLNQVLD 100 (184)
Q Consensus 43 ~~i~~~il~~i~~--~---~k~~~~-~~~~~~h~l~~---~~~~~~~vtd~~~~~~~af~fL~ei~~ 100 (184)
+-|-..+++++-| + +|++.. .++|-++|-.. ++.+++|.+..+.|+-++..+|.++++
T Consensus 48 ~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 48 NLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp HHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred HHHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 3455667777644 3 467777 79999999884 568999999999999999999999976
No 20
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.5 Score=35.98 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=35.6
Q ss_pred eeEeeccEEEEEEee-CCEEEEEEecCCCCh----------------------HHHHHHHHHHHHHHHh
Q 029997 59 QSVQHEEYKVHSYNR-NGLCVMGFMDDHYPV----------------------RSSFSLLNQVLDEYQK 104 (184)
Q Consensus 59 ~~~~~~~~~~h~l~~-~~~~~~~vtd~~~~~----------------------~~af~fL~ei~~~f~~ 104 (184)
..+..+.|.+|++.. .|+=|++++|+..+. .-.-.||.+|...|..
T Consensus 120 ~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd 188 (219)
T 3cue_A 120 RQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSD 188 (219)
T ss_dssp CEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHH
Confidence 456678899999888 899999999998743 4467888888877765
No 21
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=94.64 E-value=0.23 Score=36.97 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=64.6
Q ss_pred CcceeeeeeecCC-CchhhHhhHHHHHHHHHHHHhccCCCCCceeEeeccEEEEEEeeC--CEEEEEEecCCCChHHHHH
Q 029997 17 DPVVLATAMDVSH-FGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN--GLCVMGFMDDHYPVRSSFS 93 (184)
Q Consensus 17 d~~~L~~~~d~~~-~~~~~r~~~ke~~~~i~~~il~~i~~~~k~~~~~~~~~~h~l~~~--~~~~~~vtd~~~~~~~af~ 93 (184)
.|++|=++...+. ++. .+..+++.++-.= .....++.+|+|.+++..++ +++|++|=..-.+-..+=.
T Consensus 20 GGvVLWs~~~~~~~~~~--------~IN~LIr~VlLEE-R~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD~ 90 (185)
T 2fh5_A 20 GGLVLWCFQGVSDSCTG--------PVNALIRSVLLQE-RGGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDK 90 (185)
T ss_dssp TSBEEEEEBTTTBSCCC--------HHHHHHHHTGGGC--------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHH
T ss_pred CeEEEEeecCCcccccc--------hHHHHHHHhhhcc-ccCCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHHH
Confidence 5788877533321 121 2234455554321 12235688999999998885 6999999777767777778
Q ss_pred HHHHHHHHHHhhcccchhh---hh--cCCCCCchHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 029997 94 LLNQVLDEYQKNFGESWRT---AQ--ADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLAR 164 (184)
Q Consensus 94 fL~ei~~~f~~~~~~~~~~---~~--~~~~~~~~~l~~~m~~y~~~~~~d~l~~i~~~l~evk~im~~Ni~~iL~R 164 (184)
||+.|+..|...|+..... +. .....|-..+++++..-........ .+.....++... -.++++.++++
T Consensus 91 LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~-~k~mr~fees~k-s~k~~~~~i~~ 164 (185)
T 2fh5_A 91 LIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRA-PTTMKKFEDSEK-AKKPVRSMIET 164 (185)
T ss_dssp HHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHHHHTC----------------------------
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHHHHHHhhh-HHhhccHhhhhh-hhhhhhhhccc
Confidence 9999999999999665221 11 1123466677776654221100011 222344555554 45666666655
No 22
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=92.97 E-value=0.89 Score=32.83 Aligned_cols=98 Identities=16% Similarity=0.272 Sum_probs=60.8
Q ss_pred CeEEEEEEEeeCCCCCCcceeeeeeec------CCC---chhhHhhHHHHHHHHHHHHhccCCCC----CceeEeeccEE
Q 029997 1 MKITALLVLKCNPDGSDPVVLATAMDV------SHF---GYFQRSSVKEFILFVARTVGKRTPPG----QRQSVQHEEYK 67 (184)
Q Consensus 1 M~i~~~~v~r~~~~~~d~~~L~~~~d~------~~~---~~~~r~~~ke~~~~i~~~il~~i~~~----~k~~~~~~~~~ 67 (184)
|.|+++.|+-. ++.++-...+.. +.. ..-.....---+-+-++.+.+++.|. .-.+++.+.|.
T Consensus 1 M~i~~~~Ii~r----~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~yk 76 (159)
T 3cue_C 1 MGIYSFWIFDR----HCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYR 76 (159)
T ss_dssp CCCCEEEEECS----SSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCB
T ss_pred CeEEEEEEEcC----CCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEE
Confidence 88899999886 345554443321 000 00111111223345566677776553 23567789999
Q ss_pred EEEEee-CCEEEEEEecCCCChHHHHHHHHHHHH-HHHh
Q 029997 68 VHSYNR-NGLCVMGFMDDHYPVRSSFSLLNQVLD-EYQK 104 (184)
Q Consensus 68 ~h~l~~-~~~~~~~vtd~~~~~~~af~fL~ei~~-~f~~ 104 (184)
.|++.. .|+-|++++|...+. .-.+|.+|.. .|..
T Consensus 77 l~~~eT~TgiKFvl~td~~~~~--i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 77 VHTYCTASGLWFVLLSDFKQQS--YTQVLQYIYSHIYVK 113 (159)
T ss_dssp EEEECCSSCCEEEEECCSSSSC--THHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEEeCCCcch--HHHHHHHHHHHHHHH
Confidence 999998 899999999987554 4577888886 6654
No 23
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=92.91 E-value=1.7 Score=30.60 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=35.9
Q ss_pred eeEeeccEEEEEEee-CCEEEEEEecCCCChHHHHHHHHHHHHHHHhh
Q 029997 59 QSVQHEEYKVHSYNR-NGLCVMGFMDDHYPVRSSFSLLNQVLDEYQKN 105 (184)
Q Consensus 59 ~~~~~~~~~~h~l~~-~~~~~~~vtd~~~~~~~af~fL~ei~~~f~~~ 105 (184)
.+...++|..|++.. .|+=|+.++|+. ...-.-.||++|.+.|...
T Consensus 65 ~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~ 111 (142)
T 2j3w_A 65 TVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKF 111 (142)
T ss_dssp EEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHH
T ss_pred eeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHH
Confidence 455678899999888 899999999974 2445678899988877653
No 24
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=91.78 E-value=2.6 Score=30.11 Aligned_cols=92 Identities=16% Similarity=0.086 Sum_probs=59.1
Q ss_pred EEEEEEeeCCCCCCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeeccEEEEEEeeCCEEEEEEec
Q 029997 4 TALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCVMGFMD 83 (184)
Q Consensus 4 ~~~~v~r~~~~~~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~~~k~~~~~~~~~~h~l~~~~~~~~~vtd 83 (184)
=+++|+-. +.-.+|+.++.....+.-.+ +...+.+.+.+. +- + .-.+.++++.+.|....++.|+++++
T Consensus 14 ~~ililn~----~Gk~~lsK~Y~~~~~~~~~~---~~~e~~i~~~~~-r~--~-~~i~~~~~~~~vy~~~~~Lyfv~~~~ 82 (153)
T 3tjz_C 14 KAILILDN----DGDRLFAKYYDDTYPSVKEQ---KAFEKNIFNKTH-RT--D-SEIALLEGLTVVYKSSIDLYFYVIGS 82 (153)
T ss_dssp EEEEEECT----TSCEEEEEECSSSSCSHHHH---HHHHHHHHHHHS-SC--C-CCEEEETTEEEEEEECSSCEEEEEEE
T ss_pred eEEEEECC----CCCEEEEEeCCCCCCCHHHH---HHHHHHHHHHHh-CC--C-CCEEEECCEEEEEEEECCEEEEEEEc
Confidence 34555543 34467788776321111111 112223445542 31 1 23566889999888889999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhhc
Q 029997 84 DHYPVRSSFSLLNQVLDEYQKNF 106 (184)
Q Consensus 84 ~~~~~~~af~fL~ei~~~f~~~~ 106 (184)
.+...-..+.||..+-+.+..-+
T Consensus 83 ~~eNel~ile~L~~~ve~l~~yf 105 (153)
T 3tjz_C 83 SYENELMLMTVLNCLFDSLSQML 105 (153)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHh
Confidence 99999999999998877776655
No 25
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.19 E-value=3 Score=29.78 Aligned_cols=95 Identities=13% Similarity=0.145 Sum_probs=59.8
Q ss_pred EEEEEEEeeCCCCCCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeeccEEEEEEeeCCEEEEEEe
Q 029997 3 ITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCVMGFM 82 (184)
Q Consensus 3 i~~~~v~r~~~~~~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~~~k~~~~~~~~~~h~l~~~~~~~~~vt 82 (184)
|=+++|+=. ++-.+|+..+.... ..++. ..++.+.+.+..+-+ ..--.+..+++.|-|...+++.|+|++
T Consensus 2 I~~i~Il~~----~Gk~~lsk~y~~~~-~~~~~----~~~~~~~~~i~~~~~-~~~~~i~~~~~~~vy~~~~~Lyfv~~~ 71 (158)
T 1w63_Q 2 MRFMLLFSR----QGKLRLQKWYLATS-DKERK----KMVRELMQVVLARKP-KMCSFLEWRDLKVVYKRYASLYFCCAI 71 (158)
T ss_dssp EEEEEEECS----SSCEEEEEESSCCC-HHHHH----HHHHHHHHHHHTSCS-SSCSEEEETTEEEEEEEETTEEEEEEE
T ss_pred eEEEEEECC----CCCEEEEEeCCCCC-HHHHH----HHHHHHHHHHhccCC-CCCCeEEECCEEEEEEEECCEEEEEEe
Confidence 334555533 23466777665331 22222 223334555555421 222345688888888778999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcc
Q 029997 83 DDHYPVRSSFSLLNQVLDEYQKNFG 107 (184)
Q Consensus 83 d~~~~~~~af~fL~ei~~~f~~~~~ 107 (184)
+.+...-..+.||..+-+-+..-++
T Consensus 72 ~~~~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 72 EGQDNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999987776655444
No 26
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=90.88 E-value=3 Score=29.15 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=60.2
Q ss_pred EEEEEEEeeCCCCCCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCCCceeEeeccEEEEEEeeCCEEEEEEe
Q 029997 3 ITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCVMGFM 82 (184)
Q Consensus 3 i~~~~v~r~~~~~~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~~~k~~~~~~~~~~h~l~~~~~~~~~vt 82 (184)
|=+++|+=. ++-.+|+..+.... +..++ ...+.+.+.+..+- +..--.+.++++.|-|...+++.|+|++
T Consensus 2 I~~i~i~~~----~Gk~~l~k~y~~~~-~~~~~----~~~~~f~~~v~~~~-~~~~~~~~~~~~~~vy~~~~~Lyfv~~~ 71 (142)
T 2vgl_S 2 IRFILIQNR----AGKTRLAKWYMQFD-DDEKQ----KLIEEVHAVVTVRD-AKHTNFVEFRNFKIIYRRYAGLYFCICV 71 (142)
T ss_dssp EEEEEEEET----TSCEEEEEECSCCC-HHHHH----HHHHHHHHHHHTCC-TTSCSEEEETTEEEEEEEETTEEEEEEE
T ss_pred eEEEEEEcC----CCCEEEEEeCCCCC-hhhhH----HHHHHHHHHHhcCC-CCCCCEEEECCEEEEEEEECCEEEEEEe
Confidence 334555533 23466777665321 22222 23344455555442 1222345688888888777999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcc
Q 029997 83 DDHYPVRSSFSLLNQVLDEYQKNFG 107 (184)
Q Consensus 83 d~~~~~~~af~fL~ei~~~f~~~~~ 107 (184)
+.+.+.-..+.||..+.+-+..-++
T Consensus 72 ~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 72 DVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999987776655554
No 27
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=89.00 E-value=2.2 Score=32.45 Aligned_cols=86 Identities=16% Similarity=0.202 Sum_probs=54.6
Q ss_pred HHHHhccCCCC----CceeEeeccEEEEEEee-CCEEEEEEecCCCChHHHHHHHHHHHHHHHhhcc-cchhhhh-c-CC
Q 029997 46 ARTVGKRTPPG----QRQSVQHEEYKVHSYNR-NGLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFG-ESWRTAQ-A-DN 117 (184)
Q Consensus 46 ~~~il~~i~~~----~k~~~~~~~~~~h~l~~-~~~~~~~vtd~~~~~~~af~fL~ei~~~f~~~~~-~~~~~~~-~-~~ 117 (184)
.+.+..++.|. .-.+++.+.|..|++.. .|+-|++++|+.-+. .-.||.+|.+.|....- +..-... + ..
T Consensus 118 Ld~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~~~--ir~~l~~IyelYvd~V~kNPFY~~~~pI~s 195 (219)
T 2j3t_D 118 LFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAG--IDSLLRKIYEIYSDFALKNPFYSLEMPIRC 195 (219)
T ss_dssp HHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTTCCC--HHHHHHHHHHHHHHHHTTCTTCCTTSCCCC
T ss_pred HHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCCchH--HHHHHHHHHHHHHHHhccCCCCCCCCccch
Confidence 45555555542 33677889999999998 899999999987444 66888888877765322 2211110 1 12
Q ss_pred CCCchHHHHHHhhcCC
Q 029997 118 MQPWPYLNEALNKYQD 133 (184)
Q Consensus 118 ~~~~~~l~~~m~~y~~ 133 (184)
+.|-..++.++++++.
T Consensus 196 ~~Fd~~v~~l~~~~~~ 211 (219)
T 2j3t_D 196 ELFDQNLKLALEVAEK 211 (219)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 2344566666666654
No 28
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=84.51 E-value=16 Score=30.29 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=40.5
Q ss_pred eeEeeccEEEEEEeeCCEEEEEEecCCCChHHHHHHHHHHHHHHHhhcc
Q 029997 59 QSVQHEEYKVHSYNRNGLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFG 107 (184)
Q Consensus 59 ~~~~~~~~~~h~l~~~~~~~~~vtd~~~~~~~af~fL~ei~~~f~~~~~ 107 (184)
-.+..+++.|-|...+++.|+|+++.+...-..+.||..+.+-+..-++
T Consensus 46 ~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 46 PVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp SEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3467889988888889999999999999999999999987766655444
No 29
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=84.24 E-value=5 Score=33.33 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=40.3
Q ss_pred eEeeccEEEEEEeeCCEEEEEEecCCCChHHHHHHHHHHHHHHHhhcc
Q 029997 60 SVQHEEYKVHSYNRNGLCVMGFMDDHYPVRSSFSLLNQVLDEYQKNFG 107 (184)
Q Consensus 60 ~~~~~~~~~h~l~~~~~~~~~vtd~~~~~~~af~fL~ei~~~f~~~~~ 107 (184)
.++.+++.|.|...+++.|+|+++.+...-..+.||..+.+-+..-++
T Consensus 49 ~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~~l~~yf~ 96 (423)
T 1w63_M 49 ILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFK 96 (423)
T ss_dssp EEEETTEEEEEEEETTEEEEEEESSCCCTHHHHHHHHHHHHHHHHHSS
T ss_pred EEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 456888988888889999999999999999999999988776655444
No 30
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=75.67 E-value=2 Score=21.41 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhchhchH
Q 029997 141 LKIQRELDETKIILHKTIDSVLARGEKLD 169 (184)
Q Consensus 141 ~~i~~~l~evk~im~~Ni~~iL~Rge~Le 169 (184)
..|+.++..+| .+||.+|+|=|+++
T Consensus 2 Q~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 2 QAIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 35666776665 57888888876654
No 31
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=66.08 E-value=17 Score=23.85 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhhh
Q 029997 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAAS 182 (184)
Q Consensus 138 d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~s 182 (184)
.....+..+|++++.-|.+-|+.+=.+=..||.+..++.-|..-|
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA 80 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKA 80 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456888999999999999999999999999999998888887644
No 32
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=65.90 E-value=20 Score=21.78 Aligned_cols=43 Identities=9% Similarity=0.224 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhh
Q 029997 137 ADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS 179 (184)
Q Consensus 137 ~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~ 179 (184)
...+.+|...+.|+.+++.+==..|-+-|+-||.+....+.-.
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 47 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSE 47 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3678899999999999999988888999999998877655544
No 33
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=63.34 E-value=10 Score=23.71 Aligned_cols=44 Identities=11% Similarity=0.079 Sum_probs=35.1
Q ss_pred chHHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 029997 121 WPYLNEALNKYQDP-AEADKLLKIQRELDETKIILHKTIDSVLAR 164 (184)
Q Consensus 121 ~~~l~~~m~~y~~~-~~~d~l~~i~~~l~evk~im~~Ni~~iL~R 164 (184)
...++..+++|+.+ .-.....++++-++....-=..||.++|++
T Consensus 20 ~~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 20 ESNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 36788889999865 456788899999988777788888888765
No 34
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=62.60 E-value=23 Score=21.37 Aligned_cols=42 Identities=19% Similarity=0.389 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhh
Q 029997 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS 179 (184)
Q Consensus 138 d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~ 179 (184)
..+.+|.+.+.|+.+++.+==..+.+-|+-||.+....+.-.
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 51 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQ 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 678899999999999999988899999999998877665544
No 35
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=60.20 E-value=27 Score=21.47 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHh
Q 029997 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDL 178 (184)
Q Consensus 138 d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L 178 (184)
..+.+|.+.+.|+.+++.+==..+.+-|+-||.+....+.-
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a 50 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA 50 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 57889999999999999998888889999988886655543
No 36
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=59.94 E-value=25 Score=21.05 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhh
Q 029997 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS 179 (184)
Q Consensus 138 d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~ 179 (184)
..+.+|.+.+.|+.+++.+==..+.+-|+-||.+....+.-.
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 53 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 53 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 678899999999999999988899999999998877665544
No 37
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=58.25 E-value=27 Score=20.79 Aligned_cols=42 Identities=10% Similarity=0.213 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhh
Q 029997 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS 179 (184)
Q Consensus 138 d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~ 179 (184)
..+.+|.+.+.++.+++.+==..+-+-|+-||.+....+.-.
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 50 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAE 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999988888999999999877665544
No 38
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=58.02 E-value=9.1 Score=23.46 Aligned_cols=43 Identities=12% Similarity=0.225 Sum_probs=33.2
Q ss_pred hHHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 029997 122 PYLNEALNKYQDP-AEADKLLKIQRELDETKIILHKTIDSVLAR 164 (184)
Q Consensus 122 ~~l~~~m~~y~~~-~~~d~l~~i~~~l~evk~im~~Ni~~iL~R 164 (184)
..++..+++|+.+ .-.....++++-++....-=..||.++|++
T Consensus 19 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 19 SSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5788889999865 456788888888887777777788777765
No 39
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=51.93 E-value=45 Score=22.04 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhh
Q 029997 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS 179 (184)
Q Consensus 138 d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~ 179 (184)
+.+.++.+.+.|+++++.+==..+-+.|+-||.+....++-.
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~ 62 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 62 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 577888888888888888887888888888888876655443
No 40
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=50.97 E-value=33 Score=19.64 Aligned_cols=38 Identities=21% Similarity=0.113 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhh
Q 029997 143 IQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSA 180 (184)
Q Consensus 143 i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~ 180 (184)
...-+.|+.++-.+.+..+-..||.|+.....-++...
T Consensus 5 ~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~ 42 (54)
T 1nhl_A 5 ILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHh
Confidence 45567888889999999999999999888776665544
No 41
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=49.60 E-value=57 Score=22.00 Aligned_cols=89 Identities=11% Similarity=0.101 Sum_probs=41.9
Q ss_pred EEEEEEeeCCCCCCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCCCC--CceeEee-ccEEEEEEeeCCEEEEE
Q 029997 4 TALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPG--QRQSVQH-EEYKVHSYNRNGLCVMG 80 (184)
Q Consensus 4 ~~~~v~r~~~~~~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~~--~k~~~~~-~~~~~h~l~~~~~~~~~ 80 (184)
-+++++- .|++++++....+....-.--.+-..+-..++.+...+..+ ....++. ++|.|-+-..++.+.++
T Consensus 20 ~~avlvs-----~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~~G~l~v~~ag~~a~L~v 94 (126)
T 3leq_A 20 DHAVVLS-----EDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMGKGYLILTAAGPGAHLVV 94 (126)
T ss_dssp EEEEEEE-----TTSCEEEECTTSCHHHHHHHHHHHHHHHHC-------------CEEEEECSSCEEEEEESSTTEEEEE
T ss_pred eEEEEEc-----CCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeCCCEEEEEEeCCCcEEEE
Confidence 3455555 48999998754331010000111112222333333344333 2345564 45666555557888888
Q ss_pred EecCCCChHHHHHHHHH
Q 029997 81 FMDDHYPVRSSFSLLNQ 97 (184)
Q Consensus 81 vtd~~~~~~~af~fL~e 97 (184)
+++++..--....-+..
T Consensus 95 la~~~a~lG~v~~em~~ 111 (126)
T 3leq_A 95 LTRQGADVGVVAYQMNM 111 (126)
T ss_dssp EECTTCCHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 99999887655444443
No 42
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=45.46 E-value=53 Score=20.45 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhh
Q 029997 138 DKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS 179 (184)
Q Consensus 138 d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~ 179 (184)
..+.+|.+.+.|+.+++.+==..|-+-|+-||.+....+.-.
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 62 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 578899999999999999888888899999988876655443
No 43
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=45.09 E-value=28 Score=17.18 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhH
Q 029997 137 ADKLLKIQRELDETKIILHKTI 158 (184)
Q Consensus 137 ~d~l~~i~~~l~evk~im~~Ni 158 (184)
.+++.-++..++|-++|..++-
T Consensus 5 ~sKm~lLKKKIEEQr~i~~~~~ 26 (29)
T 3lcn_C 5 ASKMKLLKKKIEEQREILQKTH 26 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999988763
No 44
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=40.63 E-value=16 Score=23.80 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=33.7
Q ss_pred hHHHHHHhhcCCCh-hhHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 029997 122 PYLNEALNKYQDPA-EADKLLKIQRELDETKIILHKTIDSVLAR 164 (184)
Q Consensus 122 ~~l~~~m~~y~~~~-~~d~l~~i~~~l~evk~im~~Ni~~iL~R 164 (184)
+.++..+++|+.+. -.+...++|+-+++...-=..||.++|++
T Consensus 40 ~~Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 40 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp SHHHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67888889998664 45778888888887777777888877764
No 45
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=39.79 E-value=30 Score=21.21 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhch
Q 029997 144 QRELDETKIILHKTIDSVLARG 165 (184)
Q Consensus 144 ~~~l~evk~im~~Ni~~iL~Rg 165 (184)
..+++++++|+..|+-++=+|.
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~ 27 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRL 27 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999887764
No 46
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=35.49 E-value=83 Score=19.81 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=43.6
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhhh
Q 029997 123 YLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAA 181 (184)
Q Consensus 123 ~l~~~m~~y~~~~~~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~~ 181 (184)
.++..+.+..+ ...+.....-.-+++.+.+...++..+..-||.|+......+.+...
T Consensus 13 ~l~~~~~~~~~-esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~d 70 (83)
T 1l4a_C 13 EIQQQCNQVTD-DSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQD 70 (83)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433322 34567777778889999999999999999999999998887776654
No 47
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=34.77 E-value=1.2e+02 Score=21.45 Aligned_cols=85 Identities=12% Similarity=-0.049 Sum_probs=48.7
Q ss_pred CCcceeee-----eeecCCCchhhHhhHHHHHHHHHHHHhccCCCC--CceeEeec-cEEEEEEeeCCEEEEEEecCCCC
Q 029997 16 SDPVVLAT-----AMDVSHFGYFQRSSVKEFILFVARTVGKRTPPG--QRQSVQHE-EYKVHSYNRNGLCVMGFMDDHYP 87 (184)
Q Consensus 16 ~d~~~L~~-----~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~~~--~k~~~~~~-~~~~h~l~~~~~~~~~vtd~~~~ 87 (184)
.|++++++ ....+ ..-.=-..-.-+-..++.+.+.+..+ ....++.+ ++.|-.-..++.+.+++++++.+
T Consensus 37 ~DGl~ia~~~~~~~~~~~--d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~~g~l~v~~~g~~a~L~Vla~~~a~ 114 (163)
T 1j3w_A 37 RKGFVLAHKEALWAPKPP--PLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVFDETAP 114 (163)
T ss_dssp TTSCEEEEEECTTSCCCS--CHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECSSCEEEEEESSTTEEEEEEECTTSC
T ss_pred CCCCEEEeecccccCCCC--cHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCcEEEEEEeCCCeEEEEEeCCCCC
Confidence 38899998 43332 11111112223345556666666654 23455544 45554444588989999999998
Q ss_pred hHHHHHHHHHHHHHH
Q 029997 88 VRSSFSLLNQVLDEY 102 (184)
Q Consensus 88 ~~~af~fL~ei~~~f 102 (184)
--.....+.....+.
T Consensus 115 lG~v~~~m~~~v~~l 129 (163)
T 1j3w_A 115 LGKVKLHGKRASEAL 129 (163)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 766666555544443
No 48
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=34.04 E-value=84 Score=19.45 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHHhhh
Q 029997 136 EADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSA 180 (184)
Q Consensus 136 ~~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~L~~ 180 (184)
..+.+.....-+.|+.++-...+..+-..||.|+.....-.+...
T Consensus 21 s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~ 65 (79)
T 1n7s_C 21 SLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQ 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHh
Confidence 457778888888999999999999999999999888776665543
No 49
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=33.20 E-value=44 Score=23.70 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=30.0
Q ss_pred hHHHHHHhhcCCC-hhhHHHHHHHHHHH-HHHHHHHHhHHHHHhc
Q 029997 122 PYLNEALNKYQDP-AEADKLLKIQRELD-ETKIILHKTIDSVLAR 164 (184)
Q Consensus 122 ~~l~~~m~~y~~~-~~~d~l~~i~~~l~-evk~im~~Ni~~iL~R 164 (184)
+.++..+++|+.+ .-.....++++-++ ....-=..||.++|++
T Consensus 20 eeYk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLek 64 (153)
T 1zkr_A 20 DEYVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDK 64 (153)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 5788889999865 45678888998888 4444445555555544
No 50
>2grg_A Hypothetical protein; YNR034W-AP; helix/beta strand protein, structural genomics, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae} SCOP: d.110.10.1
Probab=32.34 E-value=60 Score=21.71 Aligned_cols=44 Identities=11% Similarity=0.153 Sum_probs=31.4
Q ss_pred HHHHHHHhccCCCCCceeEeeccEEEEEEeeCCEEEEEEecCCC
Q 029997 43 LFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCVMGFMDDHY 86 (184)
Q Consensus 43 ~~i~~~il~~i~~~~k~~~~~~~~~~h~l~~~~~~~~~vtd~~~ 86 (184)
..|.+.---.+....-..++.+++..|++.++|-+.++.|+++-
T Consensus 64 eDIv~lS~veLd~eGyaV~eD~~v~vhvyK~dGkTlvvYT~~nk 107 (120)
T 2grg_A 64 AEIIRKSNAELGRLGYSVYEDAQYIGHAFKKAGHFIVYFTPKNK 107 (120)
T ss_dssp HHHHHHHHHHCSSEEEEEEECSSCEEEEEEETTEEEEEEESCCC
T ss_pred HHHHHHhhhhhcccceeEEecCCEEEEEEeeCCcEEEEEccCCc
Confidence 33444333444444456778899999999999999999998753
No 51
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=32.33 E-value=1.3e+02 Score=21.06 Aligned_cols=84 Identities=14% Similarity=0.044 Sum_probs=49.7
Q ss_pred CCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhc-cCCCCCceeEeeccEEEEEEeeCCEEEEEEecCCCChHHHHHH
Q 029997 16 SDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGK-RTPPGQRQSVQHEEYKVHSYNRNGLCVMGFMDDHYPVRSSFSL 94 (184)
Q Consensus 16 ~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~-~i~~~~k~~~~~~~~~~h~l~~~~~~~~~vtd~~~~~~~af~f 94 (184)
+|+.||....+.+....-.|.++-......+.+..+ .+..+......+++|..--+....+++-.+|.++...-....+
T Consensus 46 rDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~aNtG~Il~L 125 (143)
T 3cpt_A 46 RDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSANTGLIVSL 125 (143)
T ss_dssp TTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTSCHHHHHHH
T ss_pred CCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCCCchhHhhh
Confidence 689999888876643434444444443333333322 1222333344578887755566888888888888877665555
Q ss_pred HHHHH
Q 029997 95 LNQVL 99 (184)
Q Consensus 95 L~ei~ 99 (184)
=+++.
T Consensus 126 e~~L~ 130 (143)
T 3cpt_A 126 EKELA 130 (143)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 52
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Probab=26.58 E-value=36 Score=22.83 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHhccCC--CCCceeEeecc-EEEEEEee--CCEEEEEEecCC
Q 029997 37 SVKEFILFVARTVGKRTP--PGQRQSVQHEE-YKVHSYNR--NGLCVMGFMDDH 85 (184)
Q Consensus 37 ~~ke~~~~i~~~il~~i~--~~~k~~~~~~~-~~~h~l~~--~~~~~~~vtd~~ 85 (184)
++..++..+++.+-++++ .+-|..|+.++ ..++-+.+ ||-.|+|...+.
T Consensus 42 tfd~LL~~lT~~Ls~~v~lp~GVR~lyt~~G~~~I~sl~dL~dG~~YVc~~~e~ 95 (113)
T 1mg4_A 42 SFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGESYVCGSIEP 95 (113)
T ss_dssp SHHHHHHHHHHHHCCSSSSTTCCCEEEETTSSCBCCSGGGCCTTCEEEEESSSC
T ss_pred CHHHHHHHHHHHHhhcCCCCcceeEEEcCCCCeEcCCHHHhhCCCEEEEeCCCC
Confidence 356677888888877664 35677888665 77766666 888999965433
No 53
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=26.47 E-value=97 Score=19.92 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHH---HHHHhHHHHHhch
Q 029997 139 KLLKIQRELDETKI---ILHKTIDSVLARG 165 (184)
Q Consensus 139 ~l~~i~~~l~evk~---im~~Ni~~iL~Rg 165 (184)
+|.+++.+|.++.. -|..-|+.+|+|-
T Consensus 3 nl~~i~~Ei~~~~~~~~~~~~~i~aiL~~~ 32 (95)
T 3k4t_A 3 NLNQIQKEVSEILSDQKSMKADIKAILELL 32 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888888888765 4667788888874
No 54
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=25.93 E-value=52 Score=22.05 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=31.9
Q ss_pred EEEEEEeeCCCCCCcceeeeeeecCCCchhhHhhHHHHHHHHHHHHhccCC-CC-CceeEeeccEEEE
Q 029997 4 TALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTP-PG-QRQSVQHEEYKVH 69 (184)
Q Consensus 4 ~~~~v~r~~~~~~d~~~L~~~~d~~~~~~~~r~~~ke~~~~i~~~il~~i~-~~-~k~~~~~~~~~~h 69 (184)
+|+.|... ..+..|++++..... + +..-.+.+..+-..+.++.. .+ +...++.++|.||
T Consensus 35 iyAQiidd----~~~~tlasAsT~e~~--~-k~~n~~AA~~vG~llA~ra~~~GI~~vvfDrgg~~yh 95 (112)
T 3v2d_S 35 IYAQIIDD----EKGVTLVSASSLALK--L-KGNKTEVARQVGRALAEKALALGIKQVAFDRGPYKYH 95 (112)
T ss_dssp EEEEEEET----TTTEEEEEEETTTTT--C-CCCHHHHHHHHHHHHHHHHHTTTCCBCEEECTTSCSC
T ss_pred EEEEEEec----CCCeEEEEEEecchh--c-cCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCccc
Confidence 45555542 355667766654421 1 12223444455555555432 24 5678888888886
No 55
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=25.16 E-value=1.1e+02 Score=21.98 Aligned_cols=76 Identities=12% Similarity=0.154 Sum_probs=45.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcccchhhhhcCCCCCchHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 029997 83 DDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVL 162 (184)
Q Consensus 83 d~~~~~~~af~fL~ei~~~f~~~~~~~~~~~~~~~~~~~~~l~~~m~~y~~~~~~d~l~~i~~~l~evk~im~~Ni~~iL 162 (184)
+-+|.+.+.-..|.|.++.-......- ..+..-..++.....|.+|.=.+.+-.- +..+.-.-+.+.++++|
T Consensus 85 dfTfD~~~L~~~L~ec~~lL~~lv~~H------LT~KS~~Ri~~vF~~f~~~efL~~lf~~--~~~~~L~kI~~~Lnkll 156 (161)
T 3f4m_A 85 DFTFEAAVLAGLLTECRDVLLELVEHH------LTPKSHGRIRHVFDHFSDPGLLTALYGP--DFTQHLGKICDGLRKLL 156 (161)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHTTT------SCHHHHHHHHHHHHHHTCHHHHHHHTSG--GGHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHhh------CCcchHHHHHHHHHHhCCHHHHHHHhCc--HHHHHHHHHHHHHHHHH
Confidence 445566666666666665554332211 0122234667777777777544444333 66667777788899999
Q ss_pred hchh
Q 029997 163 ARGE 166 (184)
Q Consensus 163 ~Rge 166 (184)
++|.
T Consensus 157 d~g~ 160 (161)
T 3f4m_A 157 DEGK 160 (161)
T ss_dssp HTTC
T ss_pred hCCC
Confidence 9984
No 56
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=23.78 E-value=74 Score=15.44 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 029997 137 ADKLLKIQRELDETKIILHK 156 (184)
Q Consensus 137 ~d~l~~i~~~l~evk~im~~ 156 (184)
..-+.+|++.+.++++-|..
T Consensus 4 kei~~kiK~kl~~akdK~k~ 23 (26)
T 2kfe_A 4 REFMSNLKEKLSGVKEKMKN 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHc
Confidence 34567888888888887753
No 57
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=22.72 E-value=45 Score=18.91 Aligned_cols=15 Identities=20% Similarity=0.439 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHH
Q 029997 138 DKLLKIQRELDETKI 152 (184)
Q Consensus 138 d~l~~i~~~l~evk~ 152 (184)
++|++++.++++|+.
T Consensus 32 ERl~ql~~~Leel~~ 46 (49)
T 2xus_A 32 ERLSQLRLRLEEVGA 46 (49)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 789999999999864
No 58
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=21.37 E-value=22 Score=24.08 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=29.2
Q ss_pred EEEEEEeeCCCCCCcceeeeeeecCC--CchhhHhhHHHHHHHHHHHHhccCCC-C-CceeEeeccEEEE
Q 029997 4 TALLVLKCNPDGSDPVVLATAMDVSH--FGYFQRSSVKEFILFVARTVGKRTPP-G-QRQSVQHEEYKVH 69 (184)
Q Consensus 4 ~~~~v~r~~~~~~d~~~L~~~~d~~~--~~~~~r~~~ke~~~~i~~~il~~i~~-~-~k~~~~~~~~~~h 69 (184)
+|+.|+.. ..+.+|++++.... .+......-.+.+..+-..+.++... + +...++.++|.||
T Consensus 34 IyAQiidd----~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfDrgg~~yh 99 (116)
T 3r8s_O 34 IYAQVIAP----NGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYH 99 (116)
T ss_dssp EEEEEECT----TSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHHHHTTTCCCCEEECTTSCSS
T ss_pred EEEEEEEc----CCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCccc
Confidence 45555542 35566666654321 00000011123334444444444322 4 5678888888765
No 59
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=21.35 E-value=1.7e+02 Score=18.72 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhchhchHHHHHhhHH
Q 029997 137 ADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSD 177 (184)
Q Consensus 137 ~d~l~~i~~~l~evk~im~~Ni~~iL~Rge~Le~L~~ks~~ 177 (184)
..++.++-..+..++--|..+|++-.++.+.|=+|-+|-..
T Consensus 32 d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~ 72 (91)
T 2pjw_V 32 DSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISE 72 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999988888877654
No 60
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=21.10 E-value=1.2e+02 Score=17.37 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 029997 137 ADKLLKIQRELDETKIILHKT 157 (184)
Q Consensus 137 ~d~l~~i~~~l~evk~im~~N 157 (184)
.+.+..++++++-+.++..+|
T Consensus 6 ~~sl~~l~~ql~sla~vvlQN 26 (53)
T 1y4m_A 6 AKALTTMQEQIDSLAAVVLQN 26 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999998888
Done!