Query 029998
Match_columns 184
No_of_seqs 158 out of 1328
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:56:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 4.6E-51 1E-55 308.0 14.5 144 4-149 2-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 4.4E-50 9.4E-55 308.3 16.5 143 4-148 6-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 5.3E-47 1.1E-51 293.0 18.3 146 1-149 1-149 (152)
4 KOG0419 Ubiquitin-protein liga 100.0 6.8E-47 1.5E-51 278.6 14.2 145 1-147 1-149 (152)
5 PLN00172 ubiquitin conjugating 100.0 4.5E-46 9.8E-51 286.4 17.8 142 5-148 3-147 (147)
6 KOG0416 Ubiquitin-protein liga 100.0 2.3E-44 5E-49 275.6 13.1 154 1-154 1-154 (189)
7 KOG0418 Ubiquitin-protein liga 100.0 7.7E-43 1.7E-47 271.2 14.6 149 1-150 1-155 (200)
8 KOG0425 Ubiquitin-protein liga 100.0 8.7E-42 1.9E-46 258.3 15.2 141 5-147 7-164 (171)
9 KOG0424 Ubiquitin-protein liga 100.0 1E-41 2.3E-46 254.5 14.8 147 1-149 1-158 (158)
10 PF00179 UQ_con: Ubiquitin-con 100.0 1.2E-40 2.6E-45 253.7 13.9 135 7-143 1-140 (140)
11 KOG0421 Ubiquitin-protein liga 100.0 9.3E-41 2E-45 249.5 10.9 139 4-145 30-171 (175)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 7.7E-40 1.7E-44 249.7 15.3 136 6-143 2-141 (141)
13 smart00212 UBCc Ubiquitin-conj 100.0 3.9E-39 8.4E-44 246.8 16.7 140 6-147 1-145 (145)
14 KOG0426 Ubiquitin-protein liga 100.0 1.8E-39 4E-44 239.5 13.8 144 1-146 1-162 (165)
15 KOG0422 Ubiquitin-protein liga 100.0 1.8E-36 3.9E-41 225.4 13.9 145 4-151 3-152 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 5.6E-35 1.2E-39 224.3 11.2 144 4-150 29-177 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 8.3E-34 1.8E-38 218.1 8.3 145 4-150 11-158 (223)
18 KOG0427 Ubiquitin conjugating 99.9 1E-27 2.2E-32 177.0 10.1 114 4-120 16-134 (161)
19 KOG0894 Ubiquitin-protein liga 99.9 5.8E-26 1.3E-30 180.3 14.5 107 1-113 1-117 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 3.1E-22 6.7E-27 159.6 13.9 141 7-149 23-171 (258)
21 KOG0428 Non-canonical ubiquiti 99.8 2.7E-20 5.8E-25 150.7 9.4 110 3-115 11-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.6 1.6E-16 3.4E-21 149.5 6.4 112 6-119 850-979 (1101)
23 KOG0896 Ubiquitin-conjugating 99.5 4.3E-14 9.2E-19 105.2 7.2 107 4-111 6-121 (138)
24 KOG0895 Ubiquitin-conjugating 99.5 9.3E-14 2E-18 131.1 10.2 108 4-113 283-404 (1101)
25 KOG0897 Predicted ubiquitin-co 98.4 6.7E-07 1.5E-11 65.1 5.9 78 49-128 13-93 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.3 5.2E-06 1.1E-10 62.7 9.7 66 45-112 34-105 (133)
27 PF05743 UEV: UEV domain; Int 98.0 1.1E-05 2.3E-10 60.2 4.9 77 29-112 32-116 (121)
28 KOG2391 Vacuolar sorting prote 97.2 0.0029 6.2E-08 54.5 9.5 78 29-113 52-137 (365)
29 PF08694 UFC1: Ubiquitin-fold 96.9 0.00037 8E-09 52.9 1.4 92 5-107 26-139 (161)
30 PF14462 Prok-E2_E: Prokaryoti 96.2 0.06 1.3E-06 40.2 9.0 92 15-111 9-119 (122)
31 PF05773 RWD: RWD domain; Int 95.3 0.042 9E-07 39.1 5.0 66 6-72 4-74 (113)
32 KOG3357 Uncharacterized conser 94.4 0.054 1.2E-06 40.7 3.6 96 5-104 29-139 (167)
33 smart00591 RWD domain in RING 94.0 0.38 8.2E-06 33.8 7.3 26 45-70 39-64 (107)
34 PF14457 Prok-E2_A: Prokaryoti 93.2 0.13 2.8E-06 40.2 4.0 61 50-112 56-125 (162)
35 KOG0309 Conserved WD40 repeat- 88.6 1.9 4.1E-05 41.4 7.4 64 6-70 423-490 (1081)
36 KOG4018 Uncharacterized conser 78.1 6.7 0.00015 32.0 5.6 37 31-68 32-70 (215)
37 PF09765 WD-3: WD-repeat regio 75.9 8.2 0.00018 32.9 5.9 80 5-105 101-181 (291)
38 PF06084 Cytomega_TRL10: Cytom 61.4 32 0.0007 25.5 5.6 14 91-104 58-71 (150)
39 PF03366 YEATS: YEATS family; 56.8 35 0.00075 23.5 5.0 43 30-74 2-44 (84)
40 KOG1832 HIV-1 Vpr-binding prot 46.2 13 0.00028 36.8 1.9 6 44-49 1269-1274(1516)
41 PF13950 Epimerase_Csub: UDP-g 43.3 14 0.0003 24.0 1.2 14 92-105 37-50 (62)
42 cd00421 intradiol_dioxygenase 42.9 35 0.00076 25.8 3.5 24 46-69 65-89 (146)
43 KOG1832 HIV-1 Vpr-binding prot 38.6 23 0.0005 35.2 2.3 6 71-76 1272-1277(1516)
44 PF06524 NOA36: NOA36 protein; 38.1 22 0.00047 30.1 1.8 6 8-13 18-23 (314)
45 KOG0662 Cyclin-dependent kinas 37.1 29 0.00063 28.3 2.3 54 61-115 167-223 (292)
46 cd03457 intradiol_dioxygenase_ 36.9 48 0.001 26.4 3.6 24 46-69 86-109 (188)
47 PF06113 BRE: Brain and reprod 33.1 57 0.0012 28.5 3.7 25 46-70 305-329 (333)
48 PF03847 TFIID_20kDa: Transcri 31.7 1.3E+02 0.0028 19.9 4.4 47 107-153 5-51 (68)
49 KOG0177 20S proteasome, regula 31.5 12 0.00027 30.0 -0.6 31 81-112 135-165 (200)
50 cd03459 3,4-PCD Protocatechuat 30.9 71 0.0015 24.7 3.6 24 46-69 72-100 (158)
51 PF06113 BRE: Brain and reprod 30.6 70 0.0015 27.9 3.8 43 29-77 53-96 (333)
52 cd07981 TAF12 TATA Binding Pro 30.2 1.5E+02 0.0033 19.5 4.7 47 107-153 7-53 (72)
53 PF14460 Prok-E2_D: Prokaryoti 29.4 89 0.0019 24.4 4.0 41 70-114 90-133 (175)
54 KOG1991 Nuclear transport rece 29.0 1.7E+02 0.0036 29.4 6.3 19 159-177 896-914 (1010)
55 PF05470 eIF-3c_N: Eukaryotic 28.4 78 0.0017 29.8 4.0 9 138-146 116-124 (595)
56 PF00845 Gemini_BL1: Geminivir 26.0 1.3E+02 0.0028 25.3 4.4 45 28-73 101-154 (276)
57 PF05470 eIF-3c_N: Eukaryotic 25.5 81 0.0017 29.8 3.5 31 121-151 106-136 (595)
58 KOG0291 WD40-repeat-containing 25.5 1.3E+02 0.0029 29.3 4.9 16 155-170 859-874 (893)
59 smart00340 HALZ homeobox assoc 24.9 50 0.0011 20.0 1.4 11 5-15 21-31 (44)
60 KOG3203 Mitochondrial/chloropl 24.2 37 0.0008 26.4 0.9 14 71-86 50-63 (165)
61 KOG4445 Uncharacterized conser 23.4 95 0.0021 26.9 3.3 25 47-71 45-69 (368)
62 KOG1047 Bifunctional leukotrie 22.9 78 0.0017 29.7 2.8 29 42-71 248-279 (613)
63 PF09943 DUF2175: Uncharacteri 22.3 85 0.0019 22.6 2.4 20 30-51 1-20 (101)
64 PF14442 Bd3614_N: Bd3614-like 22.2 1.9E+02 0.0041 21.7 4.2 22 159-180 97-118 (138)
65 KOG0416 Ubiquitin-protein liga 22.1 98 0.0021 24.6 2.9 21 31-51 48-68 (189)
66 PF15017 AF1Q: Drug resistance 21.8 88 0.0019 21.9 2.3 13 168-180 62-74 (87)
67 PLN03196 MOC1-like protein; Pr 21.5 86 0.0019 28.7 2.9 16 139-154 436-451 (487)
68 TIGR02423 protocat_alph protoc 21.2 1.3E+02 0.0027 24.2 3.4 24 46-69 96-124 (193)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-51 Score=308.00 Aligned_cols=144 Identities=36% Similarity=0.737 Sum_probs=139.3
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
+.+||.||++++ +++|+++.+.++|+++|+++|.||.+||||||+|.+.|.||++||++||+|+|.|+||||||+ .
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~-~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID-S 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC-c
Confidence 357999999877 788999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcc
Q 029998 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKK 149 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~ 149 (184)
+|+||+++|+.+|+|+++|.+||++ |++||.+||+++|++.+++.+|+.|+.+|.++||+||++||+.
T Consensus 81 ~G~IclDILk~~WsPAl~i~~Vlls-I~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLS-ICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHH-HHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999974
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-50 Score=308.28 Aligned_cols=143 Identities=41% Similarity=0.842 Sum_probs=139.1
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETIND-GLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~-nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (184)
+.+||++|++++ +++++++.+..+ |+++|+++|.||.+|||+||+|++.|.||.+||++||+|+|.++||||||+
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~- 84 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD- 84 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcC-
Confidence 799999999988 568999999988 999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 029998 80 MSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAK 148 (184)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~ 148 (184)
.+|+||+++|++.|+|+++|.+||.+ |++||.+||.++|+|.+|+++|++|+++|.++||+++++|+.
T Consensus 85 ~~G~vCLdIL~~~WsP~~~l~sILls-l~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 85 PSGNVCLDILKDRWSPVYTLETILLS-LQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCCChhHHHhCCCCccccHHHHHHH-HHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 69999999999999999999999988 999999999999999999999999999999999999999986
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=5.3e-47 Score=292.99 Aligned_cols=146 Identities=34% Similarity=0.700 Sum_probs=140.6
Q ss_pred CCchHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccc
Q 029998 1 MSSPSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (184)
Q Consensus 1 Mss~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 77 (184)
|+ +.+||++|++.+ ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 1 ~~-~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV 79 (152)
T PTZ00390 1 MS-ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79 (152)
T ss_pred Cc-HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence 55 579999999987 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcc
Q 029998 78 DEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKK 149 (184)
Q Consensus 78 ~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~ 149 (184)
+. +|.||+++|.+.|+|++||.+||++ |++||.+|++++|+|.+||++|++|++.|.++||+|+++||..
T Consensus 80 ~~-~G~iCl~iL~~~W~p~~ti~~iL~~-i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 80 DK-LGRICLDILKDKWSPALQIRTVLLS-IQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CC-CCeEECccCcccCCCCCcHHHHHHH-HHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 95 9999999999999999999999988 9999999999999999999999999999999999999999984
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-47 Score=278.65 Aligned_cols=145 Identities=35% Similarity=0.743 Sum_probs=139.2
Q ss_pred CCc-hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccccc
Q 029998 1 MSS-PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (184)
Q Consensus 1 Mss-~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (184)
|++ |-+||.++++++ ++.||+..|.++|++.|.++|+||.+|||+||+|++.|.|++.||.+||.|+|.+.+||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 788 678899999988 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHh
Q 029998 77 VDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147 (184)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a 147 (184)
|+ .+|.||+++|..+|+|+|++.+||.+ ||+||.+|++++|+|.+||++|.+|+.+|.+++|..+.+.-
T Consensus 81 vy-a~G~iClDiLqNrWsp~Ydva~ILts-iQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw 149 (152)
T KOG0419|consen 81 VY-ADGSICLDILQNRWSPTYDVASILTS-IQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSW 149 (152)
T ss_pred cC-CCCcchHHHHhcCCCCchhHHHHHHH-HHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhh
Confidence 99 58999999999999999999999988 99999999999999999999999999999999999987653
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=4.5e-46 Score=286.39 Aligned_cols=142 Identities=34% Similarity=0.734 Sum_probs=137.3
Q ss_pred HHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCCC
Q 029998 5 SKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMS 81 (184)
Q Consensus 5 ~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~ 81 (184)
.+||++|++++ +++|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||+.||+|+|.|+||||||+. +
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~-~ 81 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS-N 81 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC-C
Confidence 59999999987 5789999999999999999999999999999999999999999999999999999999999994 9
Q ss_pred CeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 029998 82 GSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAK 148 (184)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~ 148 (184)
|.||+++|.+.|+|+++|++||.+ |++||.+|++++|+|.+|+++|.+|+++|.++||+|+++||.
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~~-i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLLS-ISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHHH-HHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999988 999999999999999999999999999999999999999984
No 6
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-44 Score=275.62 Aligned_cols=154 Identities=70% Similarity=1.251 Sum_probs=150.0
Q ss_pred CCchHHHHHHHHHhcCCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 1 MSSPSKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 1 Mss~~kRL~kEl~~l~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
|++..||+..++.+|..++..|...++++.+++|.+.||.+|||+||+++++|.+|++||++.|.|.|.++||||||++.
T Consensus 1 ms~~~rRid~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 1 MSSGKRRIDTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred CCCcccchhhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhccccccc
Q 029998 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENIVN 154 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~~~~ 154 (184)
+|.||++.+++.|+|.+.+..|+..++-.||..||+.+|+|.+||.+|.++++.|.++||.+++|||+.....+
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~~~~~ 154 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPEALKE 154 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999886555
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-43 Score=271.20 Aligned_cols=149 Identities=30% Similarity=0.667 Sum_probs=143.6
Q ss_pred CCchHHHHHHHHHhcC------CCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccc
Q 029998 1 MSSPSKRRDMDVMKLM------MSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (184)
Q Consensus 1 Mss~~kRL~kEl~~l~------~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (184)
|+-+.+|+++|+++.+ ..||.+...++++.+.++.|.||++|||+||+|.+.|.+|.+|||+||+|+|.|+|||
T Consensus 1 m~~~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH 80 (200)
T KOG0418|consen 1 MSNAFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH 80 (200)
T ss_pred CccHHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence 6668899999999862 4589999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhccc
Q 029998 75 PNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKE 150 (184)
Q Consensus 75 PnV~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~ 150 (184)
|||...+|.||+++|++.|++++||+.+|.+ ||++|..|++.+|....++++|.+|++.|.+.||.|+..||.++
T Consensus 81 PnVSs~tGaICLDilkd~Wa~slTlrtvLis-lQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~~ 155 (200)
T KOG0418|consen 81 PNVSSQTGAICLDILKDQWAASLTLRTVLIS-LQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGGR 155 (200)
T ss_pred CCCCcccccchhhhhhcccchhhhHHHHHHH-HHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999 99999999999999999999999999999999999999999987
No 8
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-42 Score=258.33 Aligned_cols=141 Identities=31% Similarity=0.625 Sum_probs=130.3
Q ss_pred HHHHHHHHHhc---CCCCceEEecCC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 5 SKRRDMDVMKL---MMSDYNVETIND-GLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 5 ~kRL~kEl~~l---~~~gi~v~~~~~-nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
..-|+++|++| +..|+++.+.++ |+++|.|.|+||++|+|+||.|+..+.||.+||.+||+++|.|++|||||++
T Consensus 7 ~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~- 85 (171)
T KOG0425|consen 7 SLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE- 85 (171)
T ss_pred HHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC-
Confidence 34555666655 788999988876 8999999999999999999999999999999999999999999999999995
Q ss_pred CCeEeccCCC-------------CCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHh
Q 029998 81 SGSVCLDVIN-------------QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147 (184)
Q Consensus 81 ~G~icl~~l~-------------~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a 147 (184)
+|.+|++||. +.|.|.+|+++||++ |.+||.+||.++|+|-+|++.|++|+++|.++|++++.+.-
T Consensus 86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllS-iIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~ 164 (171)
T KOG0425|consen 86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLS-IISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQ 164 (171)
T ss_pred CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHH-HHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 9999999995 479999999999999 99999999999999999999999999999999999998753
No 9
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-41 Score=254.53 Aligned_cols=147 Identities=30% Similarity=0.612 Sum_probs=137.0
Q ss_pred CCc-hHHHHHHHHHhc---CCCCceEEecCC-----CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecc
Q 029998 1 MSS-PSKRRDMDVMKL---MMSDYNVETIND-----GLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNK 71 (184)
Q Consensus 1 Mss-~~kRL~kEl~~l---~~~gi~v~~~~~-----nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (184)
||+ +..||+.|-+.. .+-|+++.|..+ |++.|.|.|.|+.+|+|+||.|.+++.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 666 788999998765 567999988753 69999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCeEeccCCCCC--CCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcc
Q 029998 72 IYHPNVDEMSGSVCLDVINQS--WSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKK 149 (184)
Q Consensus 72 i~HPnV~~~~G~icl~~l~~~--W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~ 149 (184)
+|||||++ +|.|||++|.+. |+|+.||.+||.. ||.||..||+.+|+|.+|...|.+|+..|.++||.++++||.+
T Consensus 81 l~HPNVyp-sgtVcLsiL~e~~~W~paitikqiL~g-IqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 81 LFHPNVYP-SGTVCLSILNEEKDWRPAITIKQILLG-IQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred CcCCCcCC-CCcEehhhhccccCCCchhhHHHHHHH-HHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 99999995 999999999854 9999999999977 9999999999999999999999999999999999999999864
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.2e-40 Score=253.72 Aligned_cols=135 Identities=39% Similarity=0.821 Sum_probs=123.9
Q ss_pred HHHHHHHhc---CCCCceEEecCC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCCCC
Q 029998 7 RRDMDVMKL---MMSDYNVETIND-GLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSG 82 (184)
Q Consensus 7 RL~kEl~~l---~~~gi~v~~~~~-nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G 82 (184)
||++|++.+ ++.|+.+.+.++ |++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+ .+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-ccc
Confidence 899999877 788999999987 999999999999999999999999999999999999999999999999999 699
Q ss_pred eEeccCCCC-CCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 029998 83 SVCLDVINQ-SWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYC 143 (184)
Q Consensus 83 ~icl~~l~~-~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~ 143 (184)
.||+++|.. .|+|+++|.+||.+ |+++|.+|+.++++|.+|+++|++++++|.++||+|.
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~~-i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILLS-IQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHHH-HHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred cchhhhhhcccCCcccccccHHHH-HHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999985 59999999999988 9999999999999999999999999999999999984
No 11
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-41 Score=249.54 Aligned_cols=139 Identities=35% Similarity=0.691 Sum_probs=132.5
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
..|||++||..| ..+||++.|.++|++.|.++|.||++|+|+|-.|++.+.||.+||+.||+|+|+|++|||||| .
T Consensus 30 V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD-~ 108 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD-L 108 (175)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc-c
Confidence 479999999998 456999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHH
Q 029998 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCER 145 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~ 145 (184)
.|.||+++|++.|+..|.++.||++ ||+||-+||..+|+|..||+++. |.++|++.+.+.-++
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILLS-iQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILLS-IQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHHH-HHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 9999999999999999999999999 99999999999999999999997 999999998877654
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=7.7e-40 Score=249.66 Aligned_cols=136 Identities=40% Similarity=0.836 Sum_probs=130.3
Q ss_pred HHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCCCC
Q 029998 6 KRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSG 82 (184)
Q Consensus 6 kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G 82 (184)
|||++|++.+ ++.|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.+++|||||+ .+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-ENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CCC
Confidence 7999999886 567999999999999999999999999999999999999999999999999999999999999 699
Q ss_pred eEeccCCCCC-CCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 029998 83 SVCLDVINQS-WSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYC 143 (184)
Q Consensus 83 ~icl~~l~~~-W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~ 143 (184)
.||+++|... |+|+++|.+||.+ |+++|.+|+.++|+|.+|+++|++|+++|.++||.|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~-i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLS-LQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHH-HHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999877 9999999999988 9999999999999999999999999999999999874
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=3.9e-39 Score=246.83 Aligned_cols=140 Identities=39% Similarity=0.797 Sum_probs=133.3
Q ss_pred HHHHHHHHhc---CCCCceEEecCC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCCC
Q 029998 6 KRRDMDVMKL---MMSDYNVETIND-GLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMS 81 (184)
Q Consensus 6 kRL~kEl~~l---~~~gi~v~~~~~-nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~ 81 (184)
+||++|++.+ ++.|+.+.+.++ |+++|+++|.||.+|||+||+|++.|.||++||+.||+|+|.+++|||||+. +
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~-~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDS-S 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECC-C
Confidence 5899999876 567999888776 9999999999999999999999999999999999999999999999999995 9
Q ss_pred CeEeccCCC-CCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHh
Q 029998 82 GSVCLDVIN-QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147 (184)
Q Consensus 82 G~icl~~l~-~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a 147 (184)
|.||+++|. ++|+|++++.+||.. |+.+|.+|+.++++|.+|+++|.++++.|.++|+.++++|+
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~-i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLLS-IQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999998 899999999999988 99999999999999999999999999999999999999985
No 14
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-39 Score=239.53 Aligned_cols=144 Identities=28% Similarity=0.563 Sum_probs=135.7
Q ss_pred CCc-hHHHHHHHHHhc---CCCCceEEecC-CCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccc
Q 029998 1 MSS-PSKRRDMDVMKL---MMSDYNVETIN-DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (184)
Q Consensus 1 Mss-~~kRL~kEl~~l---~~~gi~v~~~~-~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 75 (184)
|+. |.|||++|+++| ++.||.+.|.+ +|++.|.|.|.||++|+|+||+|..++.||.+||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 555 899999999988 78899998875 5899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEeccCCC-------------CCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 029998 76 NVDEMSGSVCLDVIN-------------QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEY 142 (184)
Q Consensus 76 nV~~~~G~icl~~l~-------------~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~ 142 (184)
||+ .+|+||+++|. +.|+|.++++.||++ +.+||.+||.++.+|.+|+.++++++.+|.+.||..
T Consensus 81 Niy-~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLS-V~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~l 158 (165)
T KOG0426|consen 81 NIY-PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLS-VVSMLAEPNDESGANVDACKMWREDREEFEKIAKRL 158 (165)
T ss_pred ccc-CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHH-HHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHH
Confidence 999 59999999994 479999999999999 999999999999999999999999999999999999
Q ss_pred HHHH
Q 029998 143 CERY 146 (184)
Q Consensus 143 ~~~~ 146 (184)
++|.
T Consensus 159 vrKt 162 (165)
T KOG0426|consen 159 VRKT 162 (165)
T ss_pred HHHh
Confidence 8874
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-36 Score=225.36 Aligned_cols=145 Identities=31% Similarity=0.657 Sum_probs=133.8
Q ss_pred hHHHHHHHHHhcCCCC---c-eEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccC
Q 029998 4 PSKRRDMDVMKLMMSD---Y-NVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (184)
Q Consensus 4 ~~kRL~kEl~~l~~~g---i-~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (184)
+.+||.|||..|...+ + .+..++.|++.|++.|. |.+-||..|.|+++|.||.+|||+||+|.|.|+|||||||+
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 5799999999884333 2 35667789999999998 89999999999999999999999999999999999999996
Q ss_pred CCCeEeccCCC-CCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcccc
Q 029998 80 MSGSVCLDVIN-QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKEN 151 (184)
Q Consensus 80 ~~G~icl~~l~-~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~ 151 (184)
.|.+|+.++. ++|.|++.+.+||+. +..++.+|+++.|++.++|..|.+|+..|.++|.++++||+..+.
T Consensus 82 -~gqvClPiis~EnWkP~T~teqVlqa-Li~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~rp 152 (153)
T KOG0422|consen 82 -KGQVCLPIISAENWKPATRTEQVLQA-LIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEKRP 152 (153)
T ss_pred -CCceeeeeeecccccCcccHHHHHHH-HHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCcCC
Confidence 7999999885 899999999999988 999999999999999999999999999999999999999998764
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-35 Score=224.34 Aligned_cols=144 Identities=32% Similarity=0.717 Sum_probs=129.0
Q ss_pred hHHHHHHHHHhc-CCCCceEE--ecCCCcc--eEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccccccc
Q 029998 4 PSKRRDMDVMKL-MMSDYNVE--TINDGLN--EFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (184)
Q Consensus 4 ~~kRL~kEl~~l-~~~gi~v~--~~~~nl~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 78 (184)
+.-||++++..+ .+++++.. ...+++. ++.++|. |..+.|.||.|+|.+.+|+.||+.||+|+|+|+||||||+
T Consensus 29 a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId 107 (184)
T KOG0420|consen 29 ALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNID 107 (184)
T ss_pred HHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcC
Confidence 678999999887 45565532 2234444 5999998 9999999999999999999999999999999999999999
Q ss_pred CCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhccc
Q 029998 79 EMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKE 150 (184)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~ 150 (184)
..|.||++||+++|+|+.+|.+|+.. ++.||.+|++++|+|.+||.++++|++.|..+||.....++...
T Consensus 108 -~~GnVCLnILRedW~P~lnL~sIi~G-L~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v~~ 177 (184)
T KOG0420|consen 108 -LDGNVCLNILREDWRPVLNLNSIIYG-LQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCVGQ 177 (184)
T ss_pred -CcchHHHHHHHhcCccccchHHHHHH-HHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCccCc
Confidence 59999999999999999999999966 99999999999999999999999999999999999998887654
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-34 Score=218.15 Aligned_cols=145 Identities=23% Similarity=0.572 Sum_probs=139.5
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
..+.|.+|+..+ ||.||.|.+.++++....+.|.||.||||++|.|++.+.+..+||.+||+-.|+|+||||||- .
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa-a 89 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA-A 89 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc-c
Confidence 368899999988 788999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhccc
Q 029998 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKE 150 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~ 150 (184)
+|.||.+.|+.+|+|..+|+.||.. |..||..|++++++|.+|+.+..+|.+.|.++||.++..+|...
T Consensus 90 NGEICVNtLKkDW~p~LGirHvLlt-ikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p~ 158 (223)
T KOG0423|consen 90 NGEICVNTLKKDWNPSLGIRHVLLT-IKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKPK 158 (223)
T ss_pred CceehhhhhhcccCcccchhhHhhh-hheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999988 99999999999999999999999999999999999999999863
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-27 Score=176.98 Aligned_cols=114 Identities=25% Similarity=0.595 Sum_probs=102.8
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccc-ccccccC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKI-YHPNVDE 79 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnV~~ 79 (184)
|.+||+|||.++ +|.|+... ..+|+.+|.+-+.|.+||.|+|.+|.+.+.||+.||+..|.|.|..++ .||+|+
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY- 93 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY- 93 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee-
Confidence 689999999986 78899888 678999999999999999999999999999999999999999999876 899999
Q ss_pred CCCeEeccCCCCCCCCccchHHHHHHHHHHhhcC-CCCCCCc
Q 029998 80 MSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLY-PNPSDPL 120 (184)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~-p~~~~p~ 120 (184)
++|.||+++|.+.|+|++++.+|+++ |.+||.. .....|.
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvClS-IlSMLSSs~eKqrP~ 134 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCLS-ILSMLSSSKEKQRPT 134 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHHH-HHHHHccCccccCCC
Confidence 69999999999999999999999999 7777764 3334443
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.8e-26 Score=180.31 Aligned_cols=107 Identities=23% Similarity=0.516 Sum_probs=95.5
Q ss_pred CCc--hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecc--cc
Q 029998 1 MSS--PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNK--IY 73 (184)
Q Consensus 1 Mss--~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~ 73 (184)
|++ |.|||+||++.| |.++|.+.|.++|+.+||.+|.||++|||+||.|+.+|.||.+||++||.|++.|| .|
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRF 80 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRF 80 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCce
Confidence 566 789999999987 78899999999999999999999999999999999999999999999999999986 56
Q ss_pred cccccCCCCeEeccCCC---CCCCCccchHHHHHHHHHHhhcC
Q 029998 74 HPNVDEMSGSVCLDVIN---QSWSPMFDLLNIFESFLPQLLLY 113 (184)
Q Consensus 74 HPnV~~~~G~icl~~l~---~~W~p~~~i~~iL~~~i~~ll~~ 113 (184)
.+| -++||++.. +.|+|.+++.+||.. +.++|.+
T Consensus 81 ktn-----tRLCLSiSDfHPdsWNP~WsVStILtG-LlSFM~e 117 (244)
T KOG0894|consen 81 KTN-----TRLCLSISDFHPDSWNPGWSVSTILTG-LLSFMTE 117 (244)
T ss_pred ecC-----ceEEEeccccCcCcCCCcccHHHHHHH-HHHHHhc
Confidence 644 589999885 889999999999977 6555543
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.1e-22 Score=159.61 Aligned_cols=141 Identities=18% Similarity=0.329 Sum_probs=124.0
Q ss_pred HHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCC--CCCeeeeecccccccccCCC
Q 029998 7 RRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPY--KSPSIGFVNKIYHPNVDEMS 81 (184)
Q Consensus 7 RL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~--~pP~v~f~t~i~HPnV~~~~ 81 (184)
.|+.|+.-. +..||+|.|.-.|-+.|.++|++ ..+.|.||+|+|+|.+|.+||. .-|+|.|.+.+|||+|.+.+
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~s 101 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKS 101 (258)
T ss_pred HHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCc
Confidence 345555432 67899999999999999999995 6778999999999999999994 58999999999999999999
Q ss_pred CeEeccCCCCCCCC-ccchHHHHHHHHHHhhcCCCCCCC--ccHHHHHHHHhCHHHHHHHHHHHHHHHhcc
Q 029998 82 GSVCLDVINQSWSP-MFDLLNIFESFLPQLLLYPNPSDP--LNGDAASLMMKDRKQYDQKVKEYCERYAKK 149 (184)
Q Consensus 82 G~icl~~l~~~W~p-~~~i~~iL~~~i~~ll~~p~~~~p--~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~ 149 (184)
+.+|++-....|+. ...|+.||.. +|.+|++|+...+ .|++|+.+|+++++.|.++|+++++....-
T Consensus 102 keLdl~raf~eWRk~ehhiwqvL~y-lqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~~ 171 (258)
T KOG0429|consen 102 KELDLNRAFPEWRKEEHHIWQVLVY-LQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRSM 171 (258)
T ss_pred cceeHhhhhhhhhccccHHHHHHHH-HHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999877667976 7789999987 9999999988765 599999999999999999999999876543
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.7e-20 Score=150.74 Aligned_cols=110 Identities=24% Similarity=0.526 Sum_probs=92.8
Q ss_pred chHHHHHHHHHhcC--CCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 3 SPSKRRDMDVMKLM--MSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 3 s~~kRL~kEl~~l~--~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
.+.|||+||...+. ...+-..|.++|+++|+++|+||.+|-|+||+|+.+|.||.+||++||.+..+|+--.-- .
T Consensus 11 paVkRlmkEa~El~~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE---~ 87 (314)
T KOG0428|consen 11 PAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFE---V 87 (314)
T ss_pred HHHHHHHHHHHHhcCchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCcee---e
Confidence 36899999999984 345778999999999999999999999999999999999999999999999998643322 3
Q ss_pred CCeEeccCCC---CCCCCccchHHHHHHHHHHhhcCCC
Q 029998 81 SGSVCLDVIN---QSWSPMFDLLNIFESFLPQLLLYPN 115 (184)
Q Consensus 81 ~G~icl~~l~---~~W~p~~~i~~iL~~~i~~ll~~p~ 115 (184)
+.+||+++.. +.|.|+|+|+..|..+|-.|=..|+
T Consensus 88 nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 88 NKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred CceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 4589999885 7899999999999885555545554
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.6e-16 Score=149.53 Aligned_cols=112 Identities=24% Similarity=0.504 Sum_probs=96.5
Q ss_pred HHHHHHHHh----c---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecc--ccccc
Q 029998 6 KRRDMDVMK----L---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNK--IYHPN 76 (184)
Q Consensus 6 kRL~kEl~~----l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPn 76 (184)
+|++++..+ + .+.||.|...++.+..+.+.|.||.+|||..|.|.|.|.||.+||..||.|...+. .++||
T Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npn 929 (1101)
T KOG0895|consen 850 AQWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPN 929 (1101)
T ss_pred HHHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcc
Confidence 355555543 2 57799999999999999999999999999999999999999999999999999874 69999
Q ss_pred ccCCCCeEeccCCC-------CCCCCccchHHHHHHHHHHhhc--CCCCCCC
Q 029998 77 VDEMSGSVCLDVIN-------QSWSPMFDLLNIFESFLPQLLL--YPNPSDP 119 (184)
Q Consensus 77 V~~~~G~icl~~l~-------~~W~p~~~i~~iL~~~i~~ll~--~p~~~~p 119 (184)
.|+ .|+||+++|+ +-|+|+-+|.+||.+ ||.|+. .|.++.+
T Consensus 930 ly~-~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s-~q~l~l~~~py~ne~ 979 (1101)
T KOG0895|consen 930 LYE-DGKVCLSLLNTWHGRGNEVWNPSSSILQVLVS-IQGLVLNEEPYFNEA 979 (1101)
T ss_pred ccc-ccceehhhhccccCCCccccCcchhHHHHHHH-hhhhhcccccccCcc
Confidence 994 9999999996 569999999999988 999875 4544443
No 23
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.3e-14 Score=105.20 Aligned_cols=107 Identities=19% Similarity=0.309 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhc----CCCCceEEecCC---CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccccc
Q 029998 4 PSKRRDMDVMKL----MMSDYNVETIND---GLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (184)
Q Consensus 4 ~~kRL~kEl~~l----~~~gi~v~~~~~---nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (184)
+..||++||.+= .+..++....++ -+..|..+|.||+.|+||+.+|.++|.+.++||..||.|+|.+++.-+.
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred cchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 567899988753 333445544443 2779999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEeccCCC--CCCCCccchHHHHHHHHHHhh
Q 029998 77 VDEMSGSVCLDVIN--QSWSPMFDLLNIFESFLPQLL 111 (184)
Q Consensus 77 V~~~~G~icl~~l~--~~W~p~~~i~~iL~~~i~~ll 111 (184)
|+..+|.|.-..+. .+|+..++++.+|.. ++.++
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~-lr~~m 121 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSYSIKMVLGQ-LRKEM 121 (138)
T ss_pred cccCCCccCccccchhhcccccchhhHHHHh-hhHHH
Confidence 99888887553332 789999999999988 65443
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=9.3e-14 Score=131.11 Aligned_cols=108 Identities=25% Similarity=0.536 Sum_probs=98.9
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecc---cccccc
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNK---IYHPNV 77 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~---i~HPnV 77 (184)
..+|+++|+.-+ .+.|+.+.+.+..+...++.|.||.+|||++|+|.|.|.||..||..||.|.+++. .+.||.
T Consensus 283 ~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNl 362 (1101)
T KOG0895|consen 283 WSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNL 362 (1101)
T ss_pred hHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCc
Confidence 368999999866 67899999999999999999999999999999999999999999999999999976 799999
Q ss_pred cCCCCeEeccCCC-------CCCCCc-cchHHHHHHHHHHhhcC
Q 029998 78 DEMSGSVCLDVIN-------QSWSPM-FDLLNIFESFLPQLLLY 113 (184)
Q Consensus 78 ~~~~G~icl~~l~-------~~W~p~-~~i~~iL~~~i~~ll~~ 113 (184)
+. +|+||+++|. +.|++. .+|.++|.. ||.++.+
T Consensus 363 Yn-~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~s-IQ~Li~~ 404 (1101)
T KOG0895|consen 363 YN-DGKVCLSLLGTWTGSRREKWTPNGSSLLQVLES-IQGLILN 404 (1101)
T ss_pred cc-CceEEeeeeeecccccccCCCccccchhhhhhh-hhhhhcc
Confidence 95 9999999984 579997 899999988 9998864
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=6.7e-07 Score=65.15 Aligned_cols=78 Identities=15% Similarity=0.345 Sum_probs=56.9
Q ss_pred EEEEEEcCCCCCCCCCeeeeecccccccccCCCCeEeccCCC-CCCCCccchHHHHHHHHHHhhcCCC--CCCCccHHHH
Q 029998 49 WKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVIN-QSWSPMFDLLNIFESFLPQLLLYPN--PSDPLNGDAA 125 (184)
Q Consensus 49 f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G~icl~~l~-~~W~p~~~i~~iL~~~i~~ll~~p~--~~~p~N~ea~ 125 (184)
..+.+.|+.+||+.||.++...|+---..-..+|.||+.+|. ++|+.+++++.+++. |..++-.-. ...+++.+-.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~q-iaatlVkG~~ri~~~a~k~sk 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQ-IAATLVKGGARIEFPAEKSSK 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHH-HHHHhhccceeEecCcchhhh
Confidence 567788999999999999976554322222347899999996 789999999999988 777775543 3455554433
Q ss_pred HHH
Q 029998 126 SLM 128 (184)
Q Consensus 126 ~l~ 128 (184)
+|
T Consensus 92 -~~ 93 (122)
T KOG0897|consen 92 -LY 93 (122)
T ss_pred -Hh
Confidence 55
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.34 E-value=5.2e-06 Score=62.67 Aligned_cols=66 Identities=27% Similarity=0.636 Sum_probs=58.0
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeeeeccc---ccccccCCCCeEec---cCCCCCCCCccchHHHHHHHHHHhhc
Q 029998 45 EGGVWKIRVELPDAYPYKSPSIGFVNKI---YHPNVDEMSGSVCL---DVINQSWSPMFDLLNIFESFLPQLLL 112 (184)
Q Consensus 45 egg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnV~~~~G~icl---~~l~~~W~p~~~i~~iL~~~i~~ll~ 112 (184)
.|+.+.+.|.||+.||..||.|....+. +-|||+. +|.+|+ ...-+.|.|...+..+|.. +..+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~~~~~~D~~~P~~~~~~~l~~-a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLDEELVLDPWDPEGIIADCLER-AIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEEEecCCcccCccCHHHHHHHHHHH-HHHHHH
Confidence 6899999999999999999999998644 7899995 999999 6777899999999999988 666665
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.99 E-value=1.1e-05 Score=60.18 Aligned_cols=77 Identities=26% Similarity=0.479 Sum_probs=50.5
Q ss_pred cceEEEEEeCCCCCCCCCCEE--EEEEEcCCCCCCCCCeeeeeccc-----ccccccCCCCeEeccCCCCCCCC-ccchH
Q 029998 29 LNEFNVEFHGPKESLYEGGVW--KIRVELPDAYPYKSPSIGFVNKI-----YHPNVDEMSGSVCLDVINQSWSP-MFDLL 100 (184)
Q Consensus 29 l~~w~~~i~Gp~~tpyegg~f--~~~i~fp~~YP~~pP~v~f~t~i-----~HPnV~~~~G~icl~~l~~~W~p-~~~i~ 100 (184)
+....++|. -.|.|..| .+.|.+|.+||..||.|...... -+.+|+ .+|+|.+..| .+|.+ ..+|.
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL-~~W~~~~s~L~ 105 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYL-QNWNPPSSNLV 105 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHH-HT--TTTS-HH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchh-ccCCCCCCCHH
Confidence 444555553 35888888 57778999999999999886432 244999 5999998888 46766 78888
Q ss_pred HHHHHHHHHhhc
Q 029998 101 NIFESFLPQLLL 112 (184)
Q Consensus 101 ~iL~~~i~~ll~ 112 (184)
.++.. ++..|.
T Consensus 106 ~lv~~-l~~~F~ 116 (121)
T PF05743_consen 106 DLVQE-LQAVFS 116 (121)
T ss_dssp HHHHH-HHHCCC
T ss_pred HHHHH-HHHHHh
Confidence 88866 665553
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.0029 Score=54.48 Aligned_cols=78 Identities=26% Similarity=0.438 Sum_probs=57.7
Q ss_pred cceEEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCeeeeecc-----cccccccCCCCeEeccCCCCCCCC-ccchH
Q 029998 29 LNEFNVEFHGPKESLYEGGVWK--IRVELPDAYPYKSPSIGFVNK-----IYHPNVDEMSGSVCLDVINQSWSP-MFDLL 100 (184)
Q Consensus 29 l~~w~~~i~Gp~~tpyegg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~HPnV~~~~G~icl~~l~~~W~p-~~~i~ 100 (184)
++...++|. .+|.|..|. +.|.+.+.||+.||.+..... -.|-+|+ .+|.|.|..|. +|.+ +..|.
T Consensus 52 ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd-~nG~V~LPYLh-~W~~pssdLv 125 (365)
T KOG2391|consen 52 LLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVD-PNGKVYLPYLH-NWDPPSSDLV 125 (365)
T ss_pred hhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccC-CCCeEechhhc-cCCCccchHH
Confidence 555555554 578888774 677789999999999977631 1399999 59999999995 5765 77777
Q ss_pred HHHHHHHHHhhcC
Q 029998 101 NIFESFLPQLLLY 113 (184)
Q Consensus 101 ~iL~~~i~~ll~~ 113 (184)
.+++. +...|.+
T Consensus 126 ~Liq~-l~a~f~~ 137 (365)
T KOG2391|consen 126 GLIQE-LIAAFSE 137 (365)
T ss_pred HHHHH-HHHHhcC
Confidence 77766 6666654
No 29
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.93 E-value=0.00037 Score=52.94 Aligned_cols=92 Identities=20% Similarity=0.352 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcC----------CCCceEEecCCCcceEEEEEeCCCCCCCCCCE--EEEEEEcCCCCCCCCCeeeeec--
Q 029998 5 SKRRDMDVMKLM----------MSDYNVETINDGLNEFNVEFHGPKESLYEGGV--WKIRVELPDAYPYKSPSIGFVN-- 70 (184)
Q Consensus 5 ~kRL~kEl~~l~----------~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~--f~~~i~fp~~YP~~pP~v~f~t-- 70 (184)
.+||..|+..|- ..-+.++ .+.+-..|.+.--= .|+--. |.+++.+|..||..||.|..-.
T Consensus 26 ~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLd 100 (161)
T PF08694_consen 26 VQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALPELD 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-GGGT
T ss_pred HHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceeccccC
Confidence 489999998761 1123444 23334555443320 122334 4555667999999999998752
Q ss_pred ----ccccccccCCCCeEeccCCC-CCC---CCccchHHHHHHHH
Q 029998 71 ----KIYHPNVDEMSGSVCLDVIN-QSW---SPMFDLLNIFESFL 107 (184)
Q Consensus 71 ----~i~HPnV~~~~G~icl~~l~-~~W---~p~~~i~~iL~~~i 107 (184)
++|. +|+||++.-. .-| .|.++|...|..++
T Consensus 101 GKTaKMYR------GGkIClt~HFkPLWakN~PkfGIaHalaLGL 139 (161)
T PF08694_consen 101 GKTAKMYR------GGKICLTDHFKPLWAKNVPKFGIAHALALGL 139 (161)
T ss_dssp TT-SSBCC------CCBB---TTHHHHHHCTTTT--HHHHHHHTH
T ss_pred Cchhhhhc------CceEeeecccchhhhhcCCchhHHHHHHhcc
Confidence 4443 8999998653 335 56888887774433
No 30
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.20 E-value=0.06 Score=40.18 Aligned_cols=92 Identities=22% Similarity=0.351 Sum_probs=61.9
Q ss_pred cCCCCceEEecCCCcceEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCCCCeE--eccCC-
Q 029998 15 LMMSDYNVETINDGLNEFNVEFHG--PKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV--CLDVI- 89 (184)
Q Consensus 15 l~~~gi~v~~~~~nl~~w~~~i~G--p~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G~i--cl~~l- 89 (184)
|...|+.++...+.-..|.+ |.| -+.+.|....-.+-|.+|+.||..+|.+.+..|-.... .+|.| |-...
T Consensus 9 L~~~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~---~G~~iP~~~~~~~ 84 (122)
T PF14462_consen 9 LDGRGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA---DGGPIPNAAEVTQ 84 (122)
T ss_pred HHhcCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc---CCCcCCchhcchh
Confidence 44558888887777778877 666 36777999999999999999999999877665433211 12333 33222
Q ss_pred -------------CCCCCC-ccchHHHHHHHHHHhh
Q 029998 90 -------------NQSWSP-MFDLLNIFESFLPQLL 111 (184)
Q Consensus 90 -------------~~~W~p-~~~i~~iL~~~i~~ll 111 (184)
...|+| .-+|.+.|.. |...|
T Consensus 85 ~~~G~~wQrWSRH~~~W~P~~D~l~T~l~~-v~~~L 119 (122)
T PF14462_consen 85 TFDGRTWQRWSRHNNPWRPGVDDLWTHLAR-VEHAL 119 (122)
T ss_pred hcCCeeeeeecCCCCCCCCCCCcHHHHHHH-HHHHH
Confidence 135877 4467777755 65554
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.30 E-value=0.042 Score=39.09 Aligned_cols=66 Identities=15% Similarity=0.266 Sum_probs=36.8
Q ss_pred HHHHHHHHhc---CCCCceEEecCCCcceEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccc
Q 029998 6 KRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHG--PKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKI 72 (184)
Q Consensus 6 kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~G--p~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 72 (184)
.+++.|+..| -.... ......+...+.+.+.+ ...+.-....+.+.|.||++||..+|.|...++.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 3455666554 12222 22233344556666632 2334444578999999999999999999876543
No 32
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.39 E-value=0.054 Score=40.73 Aligned_cols=96 Identities=17% Similarity=0.330 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCCCceEEecCCCcceEEEEEeCCCCCCCCCCE----------EEEEEEcCCCCCCCCCeeeeecc-cc
Q 029998 5 SKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGV----------WKIRVELPDAYPYKSPSIGFVNK-IY 73 (184)
Q Consensus 5 ~kRL~kEl~~l~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~----------f~~~i~fp~~YP~~pP~v~f~t~-i~ 73 (184)
.+||..|++.+.. +|+-..++-..|.-.=..+.||-|-|.+ |.+++.+|-.||-.+|.+....- =-
T Consensus 29 vqrlkeey~sli~---yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgk 105 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA---YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGK 105 (167)
T ss_pred HHHHHHHHHHHHH---HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCch
Confidence 4889999987621 1111112222333223447778777753 45566679999999999875420 01
Q ss_pred cccccCCCCeEeccCC-CCCC---CCccchHHHHH
Q 029998 74 HPNVDEMSGSVCLDVI-NQSW---SPMFDLLNIFE 104 (184)
Q Consensus 74 HPnV~~~~G~icl~~l-~~~W---~p~~~i~~iL~ 104 (184)
.--.+ ..|+||+.-- +.-| .|.++|...+.
T Consensus 106 takmy-rggkiclt~hfkplwarn~pkfgiaha~a 139 (167)
T KOG3357|consen 106 TAKMY-RGGKICLTDHFKPLWARNVPKFGIAHAMA 139 (167)
T ss_pred hhhhh-cCceEeeccccchhhhhcCcchhHHHHHH
Confidence 11223 3899999533 4456 45666666553
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.97 E-value=0.38 Score=33.78 Aligned_cols=26 Identities=31% Similarity=0.649 Sum_probs=22.3
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeeeec
Q 029998 45 EGGVWKIRVELPDAYPYKSPSIGFVN 70 (184)
Q Consensus 45 egg~f~~~i~fp~~YP~~pP~v~f~t 70 (184)
..-.+.+.|.||.+||..+|.|.+.+
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEEC
Confidence 34568999999999999999998775
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=93.20 E-value=0.13 Score=40.20 Aligned_cols=61 Identities=20% Similarity=0.419 Sum_probs=45.9
Q ss_pred EEEEEcCCCCCCCCCeeeeecccc---cccccCCC-----CeEeccCCC-CCCCCccchHHHHHHHHHHhhc
Q 029998 50 KIRVELPDAYPYKSPSIGFVNKIY---HPNVDEMS-----GSVCLDVIN-QSWSPMFDLLNIFESFLPQLLL 112 (184)
Q Consensus 50 ~~~i~fp~~YP~~pP~v~f~t~i~---HPnV~~~~-----G~icl~~l~-~~W~p~~~i~~iL~~~i~~ll~ 112 (184)
.+.|.|+.+||..+|.|.++.+.| +||++. . ..+|+---. ..|.+..|+..+|.. |...|.
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~-~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~r-l~~Wl~ 125 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP-GPEGEPVSLCLYEGPWSEWRPSWGPEGFLDR-LFDWLR 125 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCC-CCCCCCccceEecCCHHHhhhccCHHHHHHH-HHHHHH
Confidence 467899999999999887775433 577773 4 578985443 568999999999877 766663
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.57 E-value=1.9 Score=41.36 Aligned_cols=64 Identities=20% Similarity=0.402 Sum_probs=43.8
Q ss_pred HHHHHHHHhc--CCCCceEEecCCCcceEEEEEeCCCCCCCCCCE-EEEEEEcCCCCCCC-CCeeeeec
Q 029998 6 KRRDMDVMKL--MMSDYNVETINDGLNEFNVEFHGPKESLYEGGV-WKIRVELPDAYPYK-SPSIGFVN 70 (184)
Q Consensus 6 kRL~kEl~~l--~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~-f~~~i~fp~~YP~~-pP~v~f~t 70 (184)
+-|..|+.-+ .-..+.++-.+-.-+.-.+.+.||-.-- .|-+ .++.|.||.+||.+ +|+++|..
T Consensus 423 QnLgeE~S~Ig~k~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~ 490 (1081)
T KOG0309|consen 423 QNLGEEFSLIGVKIRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFEN 490 (1081)
T ss_pred hhHHhHHhHhhccccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEec
Confidence 5567777655 3345555544445567778888764333 4444 48999999999997 79999874
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=78.11 E-value=6.7 Score=31.99 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=25.6
Q ss_pred eEEEEEeCCCCC--CCCCCEEEEEEEcCCCCCCCCCeeee
Q 029998 31 EFNVEFHGPKES--LYEGGVWKIRVELPDAYPYKSPSIGF 68 (184)
Q Consensus 31 ~w~~~i~Gp~~t--pyegg~f~~~i~fp~~YP~~pP~v~f 68 (184)
.+.+.|.--.+. -|.| .+.+.+.++.+||..+|.+.+
T Consensus 32 ~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 32 IFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred cceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence 366666522222 1222 789999999999999999943
No 37
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=75.90 E-value=8.2 Score=32.95 Aligned_cols=80 Identities=18% Similarity=0.339 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCCCCeE
Q 029998 5 SKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84 (184)
Q Consensus 5 ~kRL~kEl~~l~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G~i 84 (184)
-.+|.+|+..+.-.-..-.-.+.++...++.+.. +.....++|.++.+||..+|.+..--++ .
T Consensus 101 ys~ll~EIe~IGW~kl~~i~~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~-~---------- 163 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKLVQIQFDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI-P---------- 163 (291)
T ss_dssp C-CHHHHHHHHHCGCCEEEEE-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS------------
T ss_pred HHHHHHHHHHhccccceEEecCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc-c----------
Confidence 3567777777743333222245678888888872 2267789999999999999976432211 1
Q ss_pred eccCCCCCCCC-ccchHHHHHH
Q 029998 85 CLDVINQSWSP-MFDLLNIFES 105 (184)
Q Consensus 85 cl~~l~~~W~p-~~~i~~iL~~ 105 (184)
+...|.+ ..++.+++..
T Consensus 164 ----~~~~w~~~~ssL~~v~~q 181 (291)
T PF09765_consen 164 ----FSLSWSPSQSSLKDVVQQ 181 (291)
T ss_dssp ----HHHHHHCHT-SHHHHHHH
T ss_pred ----hhhhhcccccCHHHHHHH
Confidence 1125777 6778877766
No 38
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=61.42 E-value=32 Score=25.49 Aligned_cols=14 Identities=7% Similarity=0.207 Sum_probs=8.8
Q ss_pred CCCCCccchHHHHH
Q 029998 91 QSWSPMFDLLNIFE 104 (184)
Q Consensus 91 ~~W~p~~~i~~iL~ 104 (184)
..|....-+..++.
T Consensus 58 sawgagsfiatlii 71 (150)
T PF06084_consen 58 SAWGAGSFIATLII 71 (150)
T ss_pred hhcccchHHHHHHH
Confidence 46887666666553
No 39
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=56.81 E-value=35 Score=23.55 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=29.7
Q ss_pred ceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccc
Q 029998 30 NEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (184)
Q Consensus 30 ~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 74 (184)
++|.|-+.|+.+.....-+=++.+.+.+.|+. |...+..+.|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 68999999988765555666889999999887 66666655443
No 40
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=46.20 E-value=13 Score=36.83 Aligned_cols=6 Identities=50% Similarity=1.138 Sum_probs=2.5
Q ss_pred CCCCEE
Q 029998 44 YEGGVW 49 (184)
Q Consensus 44 yegg~f 49 (184)
|-||.|
T Consensus 1269 ~~~G~F 1274 (1516)
T KOG1832|consen 1269 YGGGGF 1274 (1516)
T ss_pred cccccc
Confidence 334444
No 41
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=43.32 E-value=14 Score=23.96 Aligned_cols=14 Identities=21% Similarity=0.816 Sum_probs=9.1
Q ss_pred CCCCccchHHHHHH
Q 029998 92 SWSPMFDLLNIFES 105 (184)
Q Consensus 92 ~W~p~~~i~~iL~~ 105 (184)
+|.|.++|.++|..
T Consensus 37 gW~p~~~L~~~i~~ 50 (62)
T PF13950_consen 37 GWKPKYSLEDMIRD 50 (62)
T ss_dssp ----SSSHHHHHHH
T ss_pred CCCcCCCHHHHHHH
Confidence 79999999999977
No 42
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=42.89 E-value=35 Score=25.80 Aligned_cols=24 Identities=33% Similarity=0.697 Sum_probs=22.2
Q ss_pred CCEEEEEEEcCCCCC-CCCCeeeee
Q 029998 46 GGVWKIRVELPDAYP-YKSPSIGFV 69 (184)
Q Consensus 46 gg~f~~~i~fp~~YP-~~pP~v~f~ 69 (184)
.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 489999999999999 999999887
No 43
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.59 E-value=23 Score=35.18 Aligned_cols=6 Identities=33% Similarity=0.778 Sum_probs=3.2
Q ss_pred cccccc
Q 029998 71 KIYHPN 76 (184)
Q Consensus 71 ~i~HPn 76 (184)
..||||
T Consensus 1272 G~FHP~ 1277 (1516)
T KOG1832|consen 1272 GGFHPS 1277 (1516)
T ss_pred ccccCC
Confidence 345655
No 44
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=38.05 E-value=22 Score=30.13 Aligned_cols=6 Identities=17% Similarity=0.462 Sum_probs=2.8
Q ss_pred HHHHHH
Q 029998 8 RDMDVM 13 (184)
Q Consensus 8 L~kEl~ 13 (184)
++|+++
T Consensus 18 rqk~ir 23 (314)
T PF06524_consen 18 RQKEIR 23 (314)
T ss_pred HHHHHH
Confidence 444444
No 45
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=37.13 E-value=29 Score=28.27 Aligned_cols=54 Identities=24% Similarity=0.415 Sum_probs=40.6
Q ss_pred CCCCeeeeeccccccccc-CCCCeEeccCCCCCC--CCccchHHHHHHHHHHhhcCCC
Q 029998 61 YKSPSIGFVNKIYHPNVD-EMSGSVCLDVINQSW--SPMFDLLNIFESFLPQLLLYPN 115 (184)
Q Consensus 61 ~~pP~v~f~t~i~HPnV~-~~~G~icl~~l~~~W--~p~~~i~~iL~~~i~~ll~~p~ 115 (184)
+.||.|.|-.+.|...|+ ++.|-|--.+.+.+| .|...+.+-|.. |..++-.|+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkr-if~~lg~p~ 223 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKR-IFRLLGTPT 223 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHH-HHHHhCCCc
Confidence 479999999999999998 556666555556666 677788888877 777776664
No 46
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=36.89 E-value=48 Score=26.41 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=22.1
Q ss_pred CCEEEEEEEcCCCCCCCCCeeeee
Q 029998 46 GGVWKIRVELPDAYPYKSPSIGFV 69 (184)
Q Consensus 46 gg~f~~~i~fp~~YP~~pP~v~f~ 69 (184)
.|.|.|+=.+|--||..+|.|.|.
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEE
Confidence 488999999999999999999887
No 47
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=33.13 E-value=57 Score=28.49 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=21.8
Q ss_pred CCEEEEEEEcCCCCCCCCCeeeeec
Q 029998 46 GGVWKIRVELPDAYPYKSPSIGFVN 70 (184)
Q Consensus 46 gg~f~~~i~fp~~YP~~pP~v~f~t 70 (184)
+-.|-+.|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 4458888999999999999999986
No 48
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=31.70 E-value=1.3e+02 Score=19.90 Aligned_cols=47 Identities=21% Similarity=0.372 Sum_probs=35.1
Q ss_pred HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcccccc
Q 029998 107 LPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENIV 153 (184)
Q Consensus 107 i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~~~ 153 (184)
|+.|+..-++...+..++..+...=-..|...+-..+.+.|+.+...
T Consensus 5 l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~ 51 (68)
T PF03847_consen 5 LQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSS 51 (68)
T ss_dssp HHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 56677777888889999999999999999999999999988876544
No 49
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.47 E-value=12 Score=29.98 Aligned_cols=31 Identities=13% Similarity=0.472 Sum_probs=25.5
Q ss_pred CCeEeccCCCCCCCCccchHHHHHHHHHHhhc
Q 029998 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLL 112 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~ 112 (184)
.+.+|+++|...|+|.+|++..+.. ++.++.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~l-mkKCv~ 165 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDL-MKKCVL 165 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHH-HHHHHH
Confidence 5679999999999999999988854 666653
No 50
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=30.89 E-value=71 Score=24.68 Aligned_cols=24 Identities=33% Similarity=0.762 Sum_probs=21.8
Q ss_pred CCEEEEEEEcCCCCC-----CCCCeeeee
Q 029998 46 GGVWKIRVELPDAYP-----YKSPSIGFV 69 (184)
Q Consensus 46 gg~f~~~i~fp~~YP-----~~pP~v~f~ 69 (184)
.|.|.|.-.+|--|| ..||.|.|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 488999999999999 899999887
No 51
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=30.60 E-value=70 Score=27.94 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=34.9
Q ss_pred cceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeee-cccccccc
Q 029998 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFV-NKIYHPNV 77 (184)
Q Consensus 29 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~-t~i~HPnV 77 (184)
...+++.| ||.|...+-.|.|...||..||-+.|. ..-|+|-.
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~ 96 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDP 96 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCCh
Confidence 44666666 599999999999999999999999996 33488843
No 52
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=30.22 E-value=1.5e+02 Score=19.51 Aligned_cols=47 Identities=26% Similarity=0.332 Sum_probs=37.6
Q ss_pred HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcccccc
Q 029998 107 LPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENIV 153 (184)
Q Consensus 107 i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~~~ 153 (184)
|+.|+..-++...+..+|...+..--+.|...+-.-+.++|.....+
T Consensus 7 l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~ 53 (72)
T cd07981 7 LQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSD 53 (72)
T ss_pred HHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45556555666779999999999999999999999999888865443
No 53
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=29.38 E-value=89 Score=24.36 Aligned_cols=41 Identities=29% Similarity=0.441 Sum_probs=23.6
Q ss_pred ccccc---ccccCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCC
Q 029998 70 NKIYH---PNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYP 114 (184)
Q Consensus 70 t~i~H---PnV~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p 114 (184)
|+.|| +||+ .+|+||..... .|.......+..+...+|..+
T Consensus 90 T~Ly~aPf~NV~-~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ 133 (175)
T PF14460_consen 90 TPLYHAPFFNVY-SNGSVCWGNNS---LPKISTLASIEAWEDAFFNSP 133 (175)
T ss_pred CeeEeCCccccC-CCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCC
Confidence 45665 4998 48999997643 233333444545344455554
No 54
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.04 E-value=1.7e+02 Score=29.39 Aligned_cols=19 Identities=21% Similarity=0.637 Sum_probs=9.4
Q ss_pred CCCCCcccCccccCCCCcc
Q 029998 159 EESGDEEISEEESESSDDD 177 (184)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~ 177 (184)
+++.|++++++.|++++||
T Consensus 896 ~~~~~e~~~~d~dD~d~~d 914 (1010)
T KOG1991|consen 896 DDDEEEDFIDDEDDIDEDD 914 (1010)
T ss_pred CCcchhhccCccccccccc
Confidence 4455555555554444444
No 55
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=28.43 E-value=78 Score=29.85 Aligned_cols=9 Identities=44% Similarity=0.918 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 029998 138 KVKEYCERY 146 (184)
Q Consensus 138 ~~r~~~~~~ 146 (184)
++|++.+.|
T Consensus 116 klkK~~k~~ 124 (595)
T PF05470_consen 116 KLKKYNKEY 124 (595)
T ss_pred HHHhhhhhH
Confidence 333333333
No 56
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=26.01 E-value=1.3e+02 Score=25.28 Aligned_cols=45 Identities=13% Similarity=0.361 Sum_probs=29.2
Q ss_pred CcceEEEEEeCCCCCCCCC----CEEEEEEEcC-----CCCCCCCCeeeeecccc
Q 029998 28 GLNEFNVEFHGPKESLYEG----GVWKIRVELP-----DAYPYKSPSIGFVNKIY 73 (184)
Q Consensus 28 nl~~w~~~i~Gp~~tpyeg----g~f~~~i~fp-----~~YP~~pP~v~f~t~i~ 73 (184)
|..-|++..+ ..+|--.. ..|+.++.++ .+-||+||+|+.+++-|
T Consensus 101 Dp~PWkl~Yr-V~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 101 DPIPWKLYYR-VEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCeEEEEE-eecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 3445776665 33333222 3466666664 68999999999998754
No 57
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=25.54 E-value=81 Score=29.76 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=13.5
Q ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHHhcccc
Q 029998 121 NGDAASLMMKDRKQYDQKVKEYCERYAKKEN 151 (184)
Q Consensus 121 N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~ 151 (184)
|..|.+..+..-+.|.+..+....+|...+.
T Consensus 106 nakaln~lkQklkK~~k~~e~~i~~yrenPe 136 (595)
T PF05470_consen 106 NAKALNTLKQKLKKYNKEYEAQIAKYRENPE 136 (595)
T ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHhCCc
Confidence 3333333333334444444444555655443
No 58
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=25.47 E-value=1.3e+02 Score=29.29 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=7.0
Q ss_pred CCCCCCCCCcccCccc
Q 029998 155 STADEESGDEEISEEE 170 (184)
Q Consensus 155 ~~~~~~~~~~~~~~~~ 170 (184)
+.+.+++.++|.+|+|
T Consensus 859 k~~~~~~~~eed~ee~ 874 (893)
T KOG0291|consen 859 KSAKKPEEEEEDSEES 874 (893)
T ss_pred cccCCccccccccccc
Confidence 3334444444444443
No 59
>smart00340 HALZ homeobox associated leucin zipper.
Probab=24.90 E-value=50 Score=19.98 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=9.4
Q ss_pred HHHHHHHHHhc
Q 029998 5 SKRRDMDVMKL 15 (184)
Q Consensus 5 ~kRL~kEl~~l 15 (184)
.+||++|+..|
T Consensus 21 NrRL~ke~~eL 31 (44)
T smart00340 21 NRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHH
Confidence 68999999876
No 60
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=24.25 E-value=37 Score=26.40 Aligned_cols=14 Identities=43% Similarity=0.890 Sum_probs=11.7
Q ss_pred ccccccccCCCCeEec
Q 029998 71 KIYHPNVDEMSGSVCL 86 (184)
Q Consensus 71 ~i~HPnV~~~~G~icl 86 (184)
|+|||+.| .|.+|+
T Consensus 50 PiYhP~~D--cGD~VV 63 (165)
T KOG3203|consen 50 PIYHPSTD--CGDHVV 63 (165)
T ss_pred CccCCccC--CCCEEE
Confidence 79999998 787765
No 61
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=23.40 E-value=95 Score=26.94 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=22.0
Q ss_pred CEEEEEEEcCCCCCCCCCeeeeecc
Q 029998 47 GVWKIRVELPDAYPYKSPSIGFVNK 71 (184)
Q Consensus 47 g~f~~~i~fp~~YP~~pP~v~f~t~ 71 (184)
-.+.+.+..+..||...|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5678889999999999999998864
No 62
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=22.89 E-value=78 Score=29.72 Aligned_cols=29 Identities=28% Similarity=0.703 Sum_probs=23.7
Q ss_pred CCCCCCEEEEEEEcCCCCCCC---CCeeeeecc
Q 029998 42 SLYEGGVWKIRVELPDAYPYK---SPSIGFVNK 71 (184)
Q Consensus 42 tpyegg~f~~~i~fp~~YP~~---pP~v~f~t~ 71 (184)
+||.=|.|-+ +.+|++||+. -|-++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4677788887 5579999996 699999986
No 63
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=22.29 E-value=85 Score=22.61 Aligned_cols=20 Identities=20% Similarity=0.632 Sum_probs=16.6
Q ss_pred ceEEEEEeCCCCCCCCCCEEEE
Q 029998 30 NEFNVEFHGPKESLYEGGVWKI 51 (184)
Q Consensus 30 ~~w~~~i~Gp~~tpyegg~f~~ 51 (184)
.+|.|.|.| +..|+|-.|.|
T Consensus 1 ~kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 1 KKWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred CceEEEecC--CeeeecceEEE
Confidence 379999986 67899999876
No 64
>PF14442 Bd3614_N: Bd3614-like deaminase N-terminal
Probab=22.19 E-value=1.9e+02 Score=21.75 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=10.9
Q ss_pred CCCCCcccCccccCCCCcccCC
Q 029998 159 EESGDEEISEEESESSDDDIAG 180 (184)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~ 180 (184)
+|.++.---..|++|+|||-||
T Consensus 97 dDd~a~a~~~~~~DDddddda~ 118 (138)
T PF14442_consen 97 DDDGASATARASDDDDDDDDAG 118 (138)
T ss_pred CCCcccccCccCcCccchhhhh
Confidence 3333333334555556666564
No 65
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.09 E-value=98 Score=24.55 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=15.6
Q ss_pred eEEEEEeCCCCCCCCCCEEEE
Q 029998 31 EFNVEFHGPKESLYEGGVWKI 51 (184)
Q Consensus 31 ~w~~~i~Gp~~tpyegg~f~~ 51 (184)
.|++.+.=|..=||..=..-|
T Consensus 48 vWkv~V~lPd~YP~KSPSIGF 68 (189)
T KOG0416|consen 48 VWKVRVELPDNYPFKSPSIGF 68 (189)
T ss_pred eEEEEEECCCCCCCCCCcccc
Confidence 688888888888888654443
No 66
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=21.80 E-value=88 Score=21.93 Aligned_cols=13 Identities=62% Similarity=0.813 Sum_probs=5.9
Q ss_pred ccccCCCCcccCC
Q 029998 168 EEESESSDDDIAG 180 (184)
Q Consensus 168 ~~~~~~~~~~~~~ 180 (184)
+.+++++|||-.|
T Consensus 62 e~eee~~ddD~gG 74 (87)
T PF15017_consen 62 EEEEEEEDDDGGG 74 (87)
T ss_pred ccccccccCCCCc
Confidence 3344444555444
No 67
>PLN03196 MOC1-like protein; Provisional
Probab=21.50 E-value=86 Score=28.67 Aligned_cols=16 Identities=6% Similarity=0.156 Sum_probs=9.8
Q ss_pred HHHHHHHHhccccccc
Q 029998 139 VKEYCERYAKKENIVN 154 (184)
Q Consensus 139 ~r~~~~~~a~~~~~~~ 154 (184)
.++++.+|+..+.+..
T Consensus 436 ~~r~v~~y~e~~~~~~ 451 (487)
T PLN03196 436 EQRMSGDFIEGEEMEP 451 (487)
T ss_pred HHHHhhhcccccccCC
Confidence 5566777776654443
No 68
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=21.19 E-value=1.3e+02 Score=24.16 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.8
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeeeee
Q 029998 46 GGVWKIRVELPDAYPY-----KSPSIGFV 69 (184)
Q Consensus 46 gg~f~~~i~fp~~YP~-----~pP~v~f~ 69 (184)
.|.|.|+-.+|-.||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999998 88888776
Done!