Query 029998
Match_columns 184
No_of_seqs 158 out of 1328
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 10:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ayz_A UBC2, ubiquitin-conjuga 100.0 1.9E-51 6.4E-56 321.9 17.6 151 1-153 1-155 (169)
2 2aak_A UBC1, ubiquitin conjuga 100.0 3.3E-48 1.1E-52 298.6 18.0 147 1-149 1-151 (152)
3 4gpr_A Ubiquitin-conjugating e 100.0 3.7E-48 1.3E-52 298.0 17.9 143 4-148 5-150 (151)
4 2c2v_B Ubiquitin-conjugating e 100.0 1.5E-48 5.1E-53 301.2 15.4 147 1-149 2-152 (154)
5 2bep_A Ubiquitin-conjugating e 100.0 7E-48 2.4E-52 298.8 17.9 148 1-149 5-159 (159)
6 1zdn_A Ubiquitin-conjugating e 100.0 6.5E-48 2.2E-52 298.8 16.1 142 4-147 14-158 (158)
7 2ayv_A Ubiquitin-conjugating e 100.0 2.2E-47 7.6E-52 298.0 18.6 142 4-147 22-166 (166)
8 3k9o_A Ubiquitin-conjugating e 100.0 1.6E-47 5.5E-52 307.0 18.0 150 1-151 2-158 (201)
9 2r0j_A Ubiquitin carrier prote 100.0 1.1E-47 3.8E-52 294.8 16.2 144 4-149 2-148 (149)
10 1jat_A Ubiquitin-conjugating e 100.0 7.1E-48 2.4E-52 297.6 15.2 147 2-150 4-153 (155)
11 1fxt_A Ubiquitin-conjugating e 100.0 6.8E-48 2.3E-52 295.9 14.4 144 4-148 2-149 (149)
12 1z2u_A Ubiquitin-conjugating e 100.0 2.6E-47 8.9E-52 293.0 17.5 143 4-148 5-150 (150)
13 2c4o_A Ubiquitin-conjugating e 100.0 4.4E-47 1.5E-51 296.0 18.3 143 4-148 20-165 (165)
14 2onu_A Ubiquitin-conjugating e 100.0 2.4E-48 8.1E-53 299.5 10.9 150 2-151 1-150 (152)
15 2ucz_A UBC7, ubiquitin conjuga 100.0 3.2E-47 1.1E-51 296.7 17.3 146 1-148 1-164 (165)
16 1yh2_A HSPC150 protein similar 100.0 5.2E-47 1.8E-51 296.6 18.0 147 3-151 4-157 (169)
17 2e2c_A Ubiquitin conjugating e 100.0 6.8E-47 2.3E-51 292.4 18.0 142 4-148 10-154 (156)
18 2gjd_A Ubiquitin-conjugating e 100.0 5.3E-47 1.8E-51 293.4 17.1 146 1-148 1-157 (157)
19 3h8k_A Ubiquitin-conjugating e 100.0 1E-46 3.6E-51 293.5 18.4 145 2-148 2-163 (164)
20 2pwq_A Ubiquitin conjugating e 100.0 4.1E-47 1.4E-51 307.5 16.0 148 4-152 24-174 (216)
21 3bzh_A Ubiquitin-conjugating e 100.0 7.3E-47 2.5E-51 301.6 17.2 144 3-148 48-194 (194)
22 2f4z_A Tgtwinscan_2721 - E2 do 100.0 9.6E-47 3.3E-51 300.6 17.4 144 4-148 33-192 (193)
23 3rcz_B SUMO-conjugating enzyme 100.0 1.6E-46 5.5E-51 292.3 17.2 143 4-148 11-163 (163)
24 2grr_A Ubiquitin-conjugating e 100.0 1.6E-46 5.6E-51 291.7 16.5 147 1-149 4-161 (161)
25 3e46_A Ubiquitin-conjugating e 100.0 3.9E-46 1.3E-50 307.9 18.0 150 1-151 54-210 (253)
26 2z5d_A Ubiquitin-conjugating e 100.0 4.6E-47 1.6E-51 299.2 11.6 149 4-153 26-174 (179)
27 1i7k_A Ubiquitin-conjugating e 100.0 3.5E-46 1.2E-50 294.3 15.5 144 4-150 31-177 (179)
28 1wzv_A Ubiquitin-conjugating e 100.0 6.5E-46 2.2E-50 286.6 16.6 144 4-150 5-153 (155)
29 1tte_A Ubiquitin-conjugating e 100.0 1.7E-46 5.8E-51 303.6 13.5 150 2-152 1-154 (215)
30 3fn1_B NEDD8-conjugating enzym 100.0 2E-45 6.7E-50 287.1 16.9 144 2-148 13-167 (167)
31 1yrv_A Ubiquitin-conjugating l 100.0 2.1E-45 7.4E-50 287.5 14.5 143 1-145 20-168 (169)
32 3rz3_A Ubiquitin-conjugating e 100.0 5.5E-45 1.9E-49 288.5 16.5 144 4-149 8-174 (183)
33 1y8x_A Ubiquitin-conjugating e 100.0 8.8E-45 3E-49 281.7 17.0 142 1-145 4-147 (160)
34 1yf9_A Ubiquitin carrier prote 100.0 1.4E-45 4.8E-50 289.0 12.2 149 4-153 13-161 (171)
35 2y9m_A Ubiquitin-conjugating e 100.0 1.2E-44 4E-49 284.0 17.1 147 1-148 3-168 (172)
36 1c4z_D UBCH7, ubiquitin conjug 100.0 6.8E-45 2.3E-49 280.6 12.2 146 1-150 1-151 (154)
37 2nvu_C NEDD8-conjugating enzym 100.0 6.8E-44 2.3E-48 281.5 16.7 141 3-146 26-168 (180)
38 2awf_A Ubiquitin-conjugating e 100.0 2.8E-44 9.4E-49 281.9 13.9 137 4-142 18-172 (172)
39 3o2u_A NEDD8-conjugating enzym 100.0 3.6E-43 1.2E-47 279.5 15.2 143 2-147 28-178 (190)
40 4ddg_A Ubiquitin-conjugating e 100.0 5.4E-43 1.8E-47 306.1 17.1 147 2-150 2-151 (399)
41 4ds2_A Ubiquitin-conjugating e 100.0 1.2E-42 4.1E-47 271.4 12.7 140 1-141 5-164 (167)
42 3ceg_A Baculoviral IAP repeat- 100.0 2.4E-39 8.1E-44 274.7 14.0 150 4-155 77-250 (323)
43 2fo3_A Ubiquitin-conjugating e 100.0 3.1E-39 1.1E-43 241.1 12.7 115 1-117 4-122 (125)
44 2q0v_A Ubiquitin-conjugating e 100.0 3.7E-39 1.3E-43 249.1 9.0 126 3-131 21-156 (156)
45 2h2y_A Ubiquitin-conjugating e 100.0 3.6E-38 1.2E-42 238.5 14.2 114 1-116 18-135 (136)
46 1jat_B Ubiquitin-conjugating e 100.0 1.8E-39 6.3E-44 246.1 5.9 126 1-128 2-138 (138)
47 2a4d_A Ubiquitin-conjugating e 100.0 3.8E-38 1.3E-42 244.2 11.1 121 4-125 26-156 (160)
48 2a7l_A Hypothetical ubiquitin- 100.0 2.1E-37 7.2E-42 234.3 11.2 110 1-112 20-136 (136)
49 2hlw_A Ubiquitin-conjugating e 100.0 1.7E-37 5.8E-42 242.8 8.8 121 4-125 36-166 (170)
50 1zuo_A Hypothetical protein LO 100.0 1.1E-36 3.7E-41 241.5 2.2 139 1-149 24-183 (186)
51 2f4w_A Ubiquitin-conjugating e 100.0 1.5E-34 5.2E-39 229.3 14.5 131 4-138 15-154 (187)
52 2z6o_A UFM1-conjugating enzyme 99.9 1.5E-26 5.2E-31 178.1 1.4 99 5-107 34-147 (172)
53 3r3q_A Suppressor protein STP2 99.8 1.7E-18 5.8E-23 133.8 8.5 110 6-118 31-161 (162)
54 3kpa_A Probable ubiquitin fold 99.6 1.6E-17 5.6E-22 125.4 0.0 99 5-107 36-149 (168)
55 3obq_A Tumor susceptibility ge 99.4 2E-13 6.8E-18 103.7 6.6 78 27-112 51-137 (146)
56 2ebm_A RWD domain-containing p 96.4 0.013 4.3E-07 42.3 7.3 68 1-70 8-78 (128)
57 2yz0_A Serine/threonine-protei 94.6 0.17 5.9E-06 36.7 8.0 41 29-70 45-85 (138)
58 2ebk_A RWD domain-containing p 93.9 0.25 8.6E-06 35.4 7.5 63 6-69 10-78 (128)
59 2day_A Ring finger protein 25; 93.7 0.34 1.2E-05 34.6 8.0 65 6-70 11-82 (128)
60 1ukx_A GCN2, GCN2 EIF2alpha ki 91.8 1 3.5E-05 32.3 8.3 40 29-69 44-85 (137)
61 3zqs_A E3 ubiquitin-protein li 89.6 2.9 0.0001 32.3 9.5 78 6-105 4-81 (186)
62 2daw_A RWD domain containing p 87.9 0.69 2.4E-05 34.4 4.7 23 48-70 76-98 (154)
63 2dax_A Protein C21ORF6; RWD do 86.5 0.53 1.8E-05 34.8 3.3 24 47-70 73-96 (152)
64 2cwb_A Chimera of immunoglobul 79.9 0.42 1.4E-05 33.9 0.4 42 113-154 20-61 (108)
65 3rls_A YAF9, protein AF-9 homo 40.2 63 0.0022 24.5 5.8 45 27-73 30-74 (175)
66 3qrl_A Transcription initiatio 39.7 66 0.0023 23.5 5.6 43 29-73 32-77 (140)
67 2ful_A EIF-5, eukaryotic trans 24.5 16 0.00055 27.6 0.1 9 120-128 121-129 (177)
68 2iu1_A EIF5, eukaryotic transl 22.1 33 0.0011 26.7 1.4 31 118-148 113-149 (208)
69 2bum_A Protocatechuate 3,4-dio 21.5 79 0.0027 24.4 3.5 25 45-69 109-138 (209)
70 1h3o_B Transcription initiatio 21.3 1.1E+02 0.0036 19.9 3.6 47 107-153 11-57 (76)
No 1
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-51 Score=321.85 Aligned_cols=151 Identities=30% Similarity=0.622 Sum_probs=143.2
Q ss_pred CCc-hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccccc
Q 029998 1 MSS-PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (184)
Q Consensus 1 Mss-~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (184)
||+ +.+||++||+++ ++.|+++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+|||||
T Consensus 1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN 80 (169)
T 1ayz_A 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN 80 (169)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCC
Confidence 876 789999999987 7789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcccccc
Q 029998 77 VDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENIV 153 (184)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~~~ 153 (184)
|+. +|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+....+
T Consensus 81 I~~-~G~ICl~iL~~~WsP~~~i~~vL~s-i~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~~~~~ 155 (169)
T 1ayz_A 81 VYA-NGEICLDILQNRWTPTYDVASILTS-IQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWEDDMDD 155 (169)
T ss_dssp BCT-TSBBCCGGGTTTCCTTCCHHHHHHH-HHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCC-CCeEeehhhccCCCCcCcHHHHHHH-HHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCCCccC
Confidence 995 9999999999999999999999988 99999999999999999999999999999999999999999976544
No 2
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=3.3e-48 Score=298.59 Aligned_cols=147 Identities=30% Similarity=0.687 Sum_probs=141.2
Q ss_pred CCc-hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccccc
Q 029998 1 MSS-PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (184)
Q Consensus 1 Mss-~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (184)
||+ +.+||++|++++ ++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (152)
T 2aak_A 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPN 80 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCC
Confidence 886 789999999987 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcc
Q 029998 77 VDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKK 149 (184)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~ 149 (184)
|+. +|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+.
T Consensus 81 v~~-~G~iCl~iL~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 151 (152)
T 2aak_A 81 IYA-DGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151 (152)
T ss_dssp BCT-TSBBCCGGGTTSCCTTCCHHHHHHH-HHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred CCC-CCEEechhhcCCCCCCCcHHHHHHH-HHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 995 9999999999999999999999988 9999999999999999999999999999999999999999975
No 3
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=3.7e-48 Score=298.04 Aligned_cols=143 Identities=31% Similarity=0.750 Sum_probs=139.2
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
|.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+||||||+.
T Consensus 5 a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~- 83 (151)
T 4gpr_A 5 AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK- 83 (151)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECC-
Confidence 789999999987 7789999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 029998 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAK 148 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~ 148 (184)
+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~ 150 (151)
T 4gpr_A 84 NGVICLDILKDQWSPALTLSRVLLS-ISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYAR 150 (151)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCEEEcccccCCCCCCCcHHHHHHH-HHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988 999999999999999999999999999999999999999996
No 4
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-48 Score=301.18 Aligned_cols=147 Identities=33% Similarity=0.630 Sum_probs=138.8
Q ss_pred CCc-hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccccc
Q 029998 1 MSS-PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (184)
Q Consensus 1 Mss-~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (184)
||. +.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 81 (154)
T 2c2v_B 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN 81 (154)
T ss_dssp CSCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCc
Confidence 444 679999999987 7789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcc
Q 029998 77 VDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKK 149 (184)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~ 149 (184)
|+ .+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+.
T Consensus 82 v~-~~G~iCl~iL~~~W~p~~~i~~vl~~-i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~ 152 (154)
T 2c2v_B 82 VD-KLGRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN 152 (154)
T ss_dssp BC-TTCBBCCHHHHTSCCTTCCHHHHHHH-HHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred Cc-cCCeEEchhccCCCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 99 58999999999999999999999988 9999999999999999999999999999999999999999975
No 5
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=7e-48 Score=298.81 Aligned_cols=148 Identities=26% Similarity=0.653 Sum_probs=141.1
Q ss_pred CCc-hHHHHHHHHHhc------CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccc
Q 029998 1 MSS-PSKRRDMDVMKL------MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (184)
Q Consensus 1 Mss-~~kRL~kEl~~l------~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (184)
|++ +.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 664 789999999987 3679999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcc
Q 029998 74 HPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKK 149 (184)
Q Consensus 74 HPnV~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~ 149 (184)
||||+..+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 159 (159)
T 2bep_A 85 HPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 159 (159)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred ccCCCCCCCEEeChhhhccCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhcC
Confidence 99999558999999999999999999999988 9999999999999999999999999999999999999999974
No 6
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.5e-48 Score=298.75 Aligned_cols=142 Identities=25% Similarity=0.549 Sum_probs=137.7
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
+.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 14 ~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~- 92 (158)
T 1zdn_A 14 IIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGA- 92 (158)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCC-
Confidence 579999999987 6789999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHh
Q 029998 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a 147 (184)
+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||
T Consensus 93 ~G~iCl~iL~~~W~p~~~i~~vL~~-i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 93 NGEICVNVLKRDWTAELGIRHVLLT-IKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp TSBBCHHHHTTTCCTTCCHHHHHHH-HHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCEEehhhcCCCCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999988 99999999999999999999999999999999999999997
No 7
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=2.2e-47 Score=297.96 Aligned_cols=142 Identities=35% Similarity=0.767 Sum_probs=138.0
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
+.+||++|++++ ++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+ .
T Consensus 22 ~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~-~ 100 (166)
T 2ayv_A 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN-S 100 (166)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC-C
Confidence 689999999987 778999999999999999999999999999999999999999999999999999999999999 4
Q ss_pred CCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHh
Q 029998 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a 147 (184)
+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||
T Consensus 101 ~G~ICL~iL~~~WsP~~ti~~vL~s-I~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 101 QGAICLDILKDQWSPALTISKVLLS-ISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCeEEcccccccCCCCCcHHHHHHH-HHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999988 99999999999999999999999999999999999999997
No 8
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=1.6e-47 Score=307.02 Aligned_cols=150 Identities=25% Similarity=0.638 Sum_probs=141.6
Q ss_pred CCc-hHHHHHHHHHhc------CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccc
Q 029998 1 MSS-PSKRRDMDVMKL------MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (184)
Q Consensus 1 Mss-~~kRL~kEl~~l------~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (184)
||+ +.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 81 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 81 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence 776 799999999987 2569999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcccc
Q 029998 74 HPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKEN 151 (184)
Q Consensus 74 HPnV~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~ 151 (184)
||||+..+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||++..
T Consensus 82 HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~-i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~~ 158 (201)
T 3k9o_A 82 HPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPV 158 (201)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC
T ss_pred cCCCcCCCCeeeCcccccCCCCCCCHHHHHHH-HHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccccc
Confidence 99999559999999999999999999999988 999999999999999999999999999999999999999999743
No 9
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=1.1e-47 Score=294.81 Aligned_cols=144 Identities=30% Similarity=0.681 Sum_probs=138.9
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
+.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~- 80 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK- 80 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCC-
Confidence 459999999987 7789999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcc
Q 029998 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKK 149 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~ 149 (184)
+|+||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+.
T Consensus 81 ~G~iCl~iL~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 81 LGRICLDILKDKWSPALQIRTVLLS-IQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp TCBBCCGGGTTTCCTTSCHHHHHHH-HHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEechhcCCCCCCCCcHHHHHHH-HHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 8999999999999999999999988 9999999999999999999999999999999999999999975
No 10
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=7.1e-48 Score=297.64 Aligned_cols=147 Identities=38% Similarity=0.723 Sum_probs=141.2
Q ss_pred CchHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccccccc
Q 029998 2 SSPSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (184)
Q Consensus 2 ss~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 78 (184)
+++.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 83 (155)
T 1jat_A 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 83 (155)
T ss_dssp CSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC
Confidence 34689999999987 778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhccc
Q 029998 79 EMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKE 150 (184)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~ 150 (184)
.+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+.+
T Consensus 84 -~~G~iCl~iL~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~~ 153 (155)
T 1jat_A 84 -RLGRICLDVLKTNWSPALQIRTVLLS-IQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKKK 153 (155)
T ss_dssp -TTCCBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEEC
T ss_pred -CCCEEEchhhccCCCCCCCHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccC
Confidence 69999999999999999999999988 99999999999999999999999999999999999999999865
No 11
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=6.8e-48 Score=295.93 Aligned_cols=144 Identities=30% Similarity=0.693 Sum_probs=138.3
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETIND-GLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~-nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (184)
+.+||++|++++ ++.|+++.+.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 469999999987 678999999887 9999999999999999999999999999999999999999999999999995
Q ss_pred CCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 029998 80 MSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAK 148 (184)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~ 148 (184)
.+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALIS-LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHHH-HHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 59999999999999999999999988 999999999999999999999999999999999999999985
No 12
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=2.6e-47 Score=292.99 Aligned_cols=143 Identities=34% Similarity=0.743 Sum_probs=138.6
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
+.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 5 ~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~- 83 (150)
T 1z2u_A 5 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 83 (150)
T ss_dssp HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCC-
Confidence 689999999987 6789999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 029998 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAK 148 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~ 148 (184)
+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~~-i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 84 NGSICLDILRSQWSPALTISKVLLS-ICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCeEeeccccCCCCCCCCHHHHHHH-HHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999988 999999999999999999999999999999999999999985
No 13
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=4.4e-47 Score=296.01 Aligned_cols=143 Identities=32% Similarity=0.735 Sum_probs=138.6
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
+.+||++|++++ ++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 20 ~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~- 98 (165)
T 2c4o_A 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 98 (165)
T ss_dssp HHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCC-
Confidence 689999999987 6789999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 029998 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAK 148 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~ 148 (184)
+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 99 ~G~ICl~iL~~~W~P~~ti~~vL~s-i~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 99 NGSICLDILRSQWSPALTISKVLLS-ICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred CCeEeehhhcCCCCCcCcHHHHHHH-HHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999988 999999999999999999999999999999999999999985
No 14
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=2.4e-48 Score=299.52 Aligned_cols=150 Identities=59% Similarity=1.110 Sum_probs=141.5
Q ss_pred CchHHHHHHHHHhcCCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCCC
Q 029998 2 SSPSKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMS 81 (184)
Q Consensus 2 ss~~kRL~kEl~~l~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~ 81 (184)
+++.+||++|++++...|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+..+
T Consensus 1 ~sa~~Rl~kEl~~l~~~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~ 80 (152)
T 2onu_A 1 GTSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEAS 80 (152)
T ss_dssp --CCCHHHHTHHHHHHHTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTT
T ss_pred ChHHHHHHHHHHhcCcCCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcC
Confidence 35789999999999777999999999999999999999999999999999999999999999999999999999999558
Q ss_pred CeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcccc
Q 029998 82 GSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKEN 151 (184)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~ 151 (184)
|.||+++|.++|+|+++|.+||.++|++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+...
T Consensus 81 G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~~~ 150 (152)
T 2onu_A 81 GSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASKDL 150 (152)
T ss_dssp CBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCGGG
T ss_pred CeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999999999999876799999999999999999999999999999999999999998653
No 15
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=3.2e-47 Score=296.67 Aligned_cols=146 Identities=26% Similarity=0.490 Sum_probs=138.4
Q ss_pred CCc-hHHHHHHHHHhc---CCCCceEEecC-CCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccc
Q 029998 1 MSS-PSKRRDMDVMKL---MMSDYNVETIN-DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (184)
Q Consensus 1 Mss-~~kRL~kEl~~l---~~~gi~v~~~~-~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 75 (184)
|++ +.+||++|++.+ ++.|+++.+.+ +|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||
T Consensus 1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 80 (165)
T 2ucz_A 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP 80 (165)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccC
Confidence 776 789999999987 67899999976 6999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEeccCC-------------CCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 029998 76 NVDEMSGSVCLDVI-------------NQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEY 142 (184)
Q Consensus 76 nV~~~~G~icl~~l-------------~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~ 142 (184)
||+. +|+||+++| .++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|
T Consensus 81 Nv~~-~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~s-i~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~ 158 (165)
T 2ucz_A 81 NIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLS-VMSMLSEPNIESGANIDACILWRDNRPEFERQVKLS 158 (165)
T ss_dssp TBCT-TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHH-HHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCC-CCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHH-HHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHH
Confidence 9995 899999999 6789999999999988 999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 029998 143 CERYAK 148 (184)
Q Consensus 143 ~~~~a~ 148 (184)
+++|+.
T Consensus 159 ~~~~~~ 164 (165)
T 2ucz_A 159 ILKSLG 164 (165)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 999975
No 16
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.2e-47 Score=296.63 Aligned_cols=147 Identities=28% Similarity=0.624 Sum_probs=140.7
Q ss_pred chHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccC
Q 029998 3 SPSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (184)
Q Consensus 3 s~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (184)
++.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 4 ~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~- 82 (169)
T 1yh2_A 4 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID- 82 (169)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCC-
Confidence 3789999999987 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeccCCC----CCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcccc
Q 029998 80 MSGSVCLDVIN----QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKEN 151 (184)
Q Consensus 80 ~~G~icl~~l~----~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~ 151 (184)
.+|.||+++|. ++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+...
T Consensus 83 ~~G~iCl~iL~~~~~~~W~p~~~i~~vL~s-i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~~ 157 (169)
T 1yh2_A 83 SAGRICLDVLKLPPKGAWRPSLNIATVLTS-IQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQ 157 (169)
T ss_dssp TTCBBCCGGGSCTTTSCCCTTSCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC-
T ss_pred cCCeEecccccCCcccCCCCCCcHHHHHHH-HHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccccc
Confidence 59999999998 899999999999988 999999999999999999999999999999999999999999654
No 17
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=6.8e-47 Score=292.43 Aligned_cols=142 Identities=32% Similarity=0.625 Sum_probs=137.5
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
+.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|||||+.
T Consensus 10 ~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~- 88 (156)
T 2e2c_A 10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ- 88 (156)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCcc-
Confidence 689999999987 6789999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 029998 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAK 148 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~ 148 (184)
+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++| +|+++|.++||+|+++||.
T Consensus 89 ~G~iCl~iL~~~W~p~~~i~~vL~s-i~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~ 154 (156)
T 2e2c_A 89 SGNICLDILKENWTASYDVRTILLS-LQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQS 154 (156)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred CceEECccccccCCCCCcHHHHHHH-HHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999988 9999999999999999999999 8999999999999999985
No 18
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=5.3e-47 Score=293.35 Aligned_cols=146 Identities=32% Similarity=0.583 Sum_probs=137.4
Q ss_pred CCc-hHHHHHHHHHhc---CCCCceEEecC-----CCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecc
Q 029998 1 MSS-PSKRRDMDVMKL---MMSDYNVETIN-----DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNK 71 (184)
Q Consensus 1 Mss-~~kRL~kEl~~l---~~~gi~v~~~~-----~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (184)
||+ +.+||++|++++ ++.|+++.+.. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus 1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (157)
T 2gjd_A 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG 80 (157)
T ss_dssp --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence 776 789999999987 77899998875 389999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCeEeccCCCC--CCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 029998 72 IYHPNVDEMSGSVCLDVINQ--SWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAK 148 (184)
Q Consensus 72 i~HPnV~~~~G~icl~~l~~--~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~ 148 (184)
||||||+ .+|.||+++|.. +|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 81 i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 81 FYHPNVY-PSGTICLSILNEDQDWRPAITLKQIVLG-VQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp CCCTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHH-HHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred CccCCCC-CCCcEeeecccCCCCCCCCCcHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999999 599999999987 79999999999988 999999999999999999999999999999999999999985
No 19
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1e-46 Score=293.46 Aligned_cols=145 Identities=25% Similarity=0.482 Sum_probs=138.3
Q ss_pred CchHHHHHHHHHhc---CCCCceEEecCC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccc
Q 029998 2 SSPSKRRDMDVMKL---MMSDYNVETIND-GLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (184)
Q Consensus 2 ss~~kRL~kEl~~l---~~~gi~v~~~~~-nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 77 (184)
+++.+||++||+++ ++.|+++.+.++ |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV 81 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence 34789999999987 678999998876 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEeccCCC-------------CCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 029998 78 DEMSGSVCLDVIN-------------QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144 (184)
Q Consensus 78 ~~~~G~icl~~l~-------------~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~ 144 (184)
+ .+|+||+++|. ++|+|+++|++||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|++
T Consensus 82 ~-~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~-i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~ 159 (164)
T 3h8k_A 82 Y-PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS-VVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQ 159 (164)
T ss_dssp C-TTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHH-HHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred C-CCCcEeeecccCcccccccccccccCCCCCCcHHHHHHH-HHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9 59999999997 789999999999988 99999999999999999999999999999999999999
Q ss_pred HHhc
Q 029998 145 RYAK 148 (184)
Q Consensus 145 ~~a~ 148 (184)
+++.
T Consensus 160 ~s~~ 163 (164)
T 3h8k_A 160 KSLG 163 (164)
T ss_dssp HHHT
T ss_pred Hhhc
Confidence 9975
No 20
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=4.1e-47 Score=307.45 Aligned_cols=148 Identities=26% Similarity=0.594 Sum_probs=141.2
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
+.+||++|++++ ++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+..
T Consensus 24 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~ 103 (216)
T 2pwq_A 24 ELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQ 103 (216)
T ss_dssp HHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCC
Confidence 789999999987 67899999999999999999999999999999999999999999999999999999999999955
Q ss_pred CCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhccccc
Q 029998 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENI 152 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~~ 152 (184)
+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|++.|.++||+|+++||+.+..
T Consensus 104 ~G~ICL~iL~~~WsP~~ti~~VL~s-I~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~~~~ 174 (216)
T 2pwq_A 104 TGAICLDVLKNEWSPALTIRTALLS-IQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATGPKE 174 (216)
T ss_dssp TCBBCCHHHHHHCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCCC--
T ss_pred CCEEEchhhcccCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCCcc
Confidence 8999999999999999999999988 9999999999999999999999999999999999999999997654
No 21
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=7.3e-47 Score=301.60 Aligned_cols=144 Identities=31% Similarity=0.660 Sum_probs=139.0
Q ss_pred chHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccC
Q 029998 3 SPSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (184)
Q Consensus 3 s~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (184)
.+.+||++||+.+ ++.||++.+.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||||||+.
T Consensus 48 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~ 127 (194)
T 3bzh_A 48 TSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINS 127 (194)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECC
Confidence 4689999999987 6789999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 029998 80 MSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAK 148 (184)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~ 148 (184)
+|.||+++|.++|+|+++|.+||.+ |+.||.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 128 -~G~ICL~iL~~~WsP~~ti~~vL~s-I~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 128 -QGVICLDILKDNWSPALTISKVLLS-ICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp -TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred -CCceechhhhccCCCcCcHHHHHHH-HHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999988 999999999999999999999999999999999999999985
No 22
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=9.6e-47 Score=300.65 Aligned_cols=144 Identities=27% Similarity=0.633 Sum_probs=136.8
Q ss_pred hHHHHHHHHHhc---CC-------------CCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeee
Q 029998 4 PSKRRDMDVMKL---MM-------------SDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIG 67 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~-------------~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~ 67 (184)
+.+||++||+++ ++ .||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+
T Consensus 33 a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~ 112 (193)
T 2f4z_A 33 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK 112 (193)
T ss_dssp HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEE
Confidence 678999999987 33 69999999999999999999999999999999999999999999999999
Q ss_pred eecccccccccCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHh
Q 029998 68 FVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147 (184)
Q Consensus 68 f~t~i~HPnV~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a 147 (184)
|.|+||||||+..+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||
T Consensus 113 F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~s-I~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya 191 (193)
T 2f4z_A 113 FVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLS-IQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA 191 (193)
T ss_dssp ESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred EecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence 99999999999558999999999999999999999988 99999999999999999999999999999999999999999
Q ss_pred c
Q 029998 148 K 148 (184)
Q Consensus 148 ~ 148 (184)
+
T Consensus 192 ~ 192 (193)
T 2f4z_A 192 K 192 (193)
T ss_dssp C
T ss_pred c
Confidence 6
No 23
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=1.6e-46 Score=292.32 Aligned_cols=143 Identities=26% Similarity=0.559 Sum_probs=137.2
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCC-----CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccc
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETIND-----GLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~-----nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 75 (184)
|.+||+||++++ ++.|+++.+.++ |+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+||||
T Consensus 11 ~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HP 90 (163)
T 3rcz_B 11 CKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHP 90 (163)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccC
Confidence 789999999987 788999999876 899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeEeccCCCC--CCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 029998 76 NVDEMSGSVCLDVINQ--SWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAK 148 (184)
Q Consensus 76 nV~~~~G~icl~~l~~--~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~ 148 (184)
||+ .+|.||+++|.. +|+|+++|++||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus 91 nV~-~~G~iCl~iL~~~~~W~p~~ti~~vL~~-i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~ 163 (163)
T 3rcz_B 91 NVY-PSGTVCLSILNEEEGWKPAITIKQILLG-IQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163 (163)
T ss_dssp TBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHH-HHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred CCC-CCCcEeccccCCCCCcCCcCcHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence 999 599999999975 49999999999988 999999999999999999999999999999999999999984
No 24
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=1.6e-46 Score=291.72 Aligned_cols=147 Identities=26% Similarity=0.532 Sum_probs=138.5
Q ss_pred CCc-hHHHHHHHHHhc---CCCCceEEecC-----CCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecc
Q 029998 1 MSS-PSKRRDMDVMKL---MMSDYNVETIN-----DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNK 71 (184)
Q Consensus 1 Mss-~~kRL~kEl~~l---~~~gi~v~~~~-----~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (184)
|++ +.+||++|++++ ++.|+.+.+.. +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus 4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 665 789999999987 67899998864 589999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCeEeccCCCC--CCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcc
Q 029998 72 IYHPNVDEMSGSVCLDVINQ--SWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKK 149 (184)
Q Consensus 72 i~HPnV~~~~G~icl~~l~~--~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~ 149 (184)
||||||+ .+|.||+++|.. +|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||++
T Consensus 84 i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 161 (161)
T 2grr_A 84 LFHPNVY-PSGTVCLSILEEDKDWRPAITIKQILLG-IQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 161 (161)
T ss_dssp CCSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC-
T ss_pred cccCCCC-CCCeEeehhcCCCCCcCCCCcHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence 9999999 599999999986 89999999999988 9999999999999999999999999999999999999999974
No 25
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=3.9e-46 Score=307.89 Aligned_cols=150 Identities=25% Similarity=0.638 Sum_probs=142.5
Q ss_pred CCc-hHHHHHHHHHhc------CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccc
Q 029998 1 MSS-PSKRRDMDVMKL------MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (184)
Q Consensus 1 Mss-~~kRL~kEl~~l------~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (184)
|++ +.+||++||+++ ++.||++.+.++|++.|+++|.||++|||+||+|++.|.||++||++||+|+|.|+||
T Consensus 54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 133 (253)
T 3e46_A 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 133 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence 454 689999999987 3579999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcccc
Q 029998 74 HPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKEN 151 (184)
Q Consensus 74 HPnV~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~ 151 (184)
||||+..+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|++.|.++||+|+++||++..
T Consensus 134 HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~s-I~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~~~ 210 (253)
T 3e46_A 134 HPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPV 210 (253)
T ss_dssp BTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCccCCCCeeecccccCCCCCCCCHHHHHHH-HHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccccc
Confidence 99999558999999999999999999999988 999999999999999999999999999999999999999999753
No 26
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.6e-47 Score=299.17 Aligned_cols=149 Identities=61% Similarity=1.128 Sum_probs=140.9
Q ss_pred hHHHHHHHHHhcCCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCCCCe
Q 029998 4 PSKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGS 83 (184)
Q Consensus 4 ~~kRL~kEl~~l~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G~ 83 (184)
+.+||++||+++.+.|+++.+. +|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+..+|.
T Consensus 26 a~~RL~kEl~~l~~~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ 104 (179)
T 2z5d_A 26 GKRRMDTDVIKLIESKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGT 104 (179)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred HHHHHHHHHHhcCcCCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCe
Confidence 6899999999997789999887 579999999999999999999999999999999999999999999999999955999
Q ss_pred EeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcccccc
Q 029998 84 VCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENIV 153 (184)
Q Consensus 84 icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~~~ 153 (184)
||+++|.++|+|+++|.+||.++|++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+.+..+
T Consensus 105 ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~~~~~~ 174 (179)
T 2z5d_A 105 VCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALK 174 (179)
T ss_dssp BCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSSHHHHC
T ss_pred EeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcccchhh
Confidence 9999999999999999999976699999999999999999999999999999999999999999976543
No 27
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.5e-46 Score=294.30 Aligned_cols=144 Identities=31% Similarity=0.581 Sum_probs=137.7
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
+.+||++||+++ ++.||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+.
T Consensus 31 ~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~- 109 (179)
T 1i7k_A 31 VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT- 109 (179)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCcccc-
Confidence 689999999987 6789999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhccc
Q 029998 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKE 150 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~ 150 (184)
+|.||+++|.+.|+|+++|.+||.+ |++||.+|++++|+|.+|+++| +|+++|.++|++++++++..+
T Consensus 110 ~G~ICL~iL~~~WsP~~ti~~vL~s-I~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~~~ 177 (179)
T 1i7k_A 110 QGNISLDILKEKWSALYDVRTILLS-IQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTSQ 177 (179)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC--
T ss_pred CCeEEcccCcCcCCCCCCHHHHHHH-HHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999988 9999999999999999999999 999999999999999998764
No 28
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=6.5e-46 Score=286.62 Aligned_cols=144 Identities=28% Similarity=0.556 Sum_probs=138.2
Q ss_pred hHHHHHHHHHhc---CCCCceE-EecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccC
Q 029998 4 PSKRRDMDVMKL---MMSDYNV-ETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v-~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (184)
+.+||++|++++ ++.|+++ .+.++|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++|||||+.
T Consensus 5 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~ 83 (155)
T 1wzv_A 5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE 83 (155)
T ss_dssp CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCC
Confidence 679999999987 6779999 788889999999999 99999999999999999999999999999999999999995
Q ss_pred CCCeEeccCC-CCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhccc
Q 029998 80 MSGSVCLDVI-NQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKE 150 (184)
Q Consensus 80 ~~G~icl~~l-~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~ 150 (184)
+|.||+++| .++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+++
T Consensus 84 -~G~iCl~iL~~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~~ 153 (155)
T 1wzv_A 84 -NGQICLPIISSENWKPCTKTCQVLEA-LNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVDR 153 (155)
T ss_dssp -TCBCCCGGGCTTTCCTTCCHHHHHHH-HHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEEC
T ss_pred -CCeEeecCCCccCCCCCCcHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999 8999999999999988 99999999999999999999999999999999999999999865
No 29
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=1.7e-46 Score=303.62 Aligned_cols=150 Identities=30% Similarity=0.672 Sum_probs=141.5
Q ss_pred CchHHHHHHHHHhc---CCCCceEEecCC-CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccc
Q 029998 2 SSPSKRRDMDVMKL---MMSDYNVETIND-GLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (184)
Q Consensus 2 ss~~kRL~kEl~~l---~~~gi~v~~~~~-nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 77 (184)
|++.+||++|++.+ +++||++.+.++ ++++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+||||||
T Consensus 1 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 80 (215)
T 1tte_A 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI 80 (215)
T ss_dssp CTTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSS
T ss_pred ChHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcC
Confidence 45789999999987 778999999876 46799999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhccccc
Q 029998 78 DEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENI 152 (184)
Q Consensus 78 ~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~~ 152 (184)
+..+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|++.|.++||+|+++||+....
T Consensus 81 ~~~~G~ICL~iL~~~WsP~~ti~~VL~s-I~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~~~~ 154 (215)
T 1tte_A 81 SSVTGAICLDILRNAWSPVITLKSALIS-LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASETSN 154 (215)
T ss_dssp CSSSSCCCSSTTTCCSCTTCCHHHHHHH-HHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCCCSC
T ss_pred cCCCCEEECccCCCCCCCcCcHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccCCCc
Confidence 9549999999999999999999999988 9999999999999999999999999999999999999999997643
No 30
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=2e-45 Score=287.08 Aligned_cols=144 Identities=31% Similarity=0.600 Sum_probs=135.5
Q ss_pred CchHHHHHHHHHhc---CCCCceEEec-CCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccc
Q 029998 2 SSPSKRRDMDVMKL---MMSDYNVETI-NDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (184)
Q Consensus 2 ss~~kRL~kEl~~l---~~~gi~v~~~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 77 (184)
+.+.+||++||+.+ ++.|+++.+. +++++.|+++| ||++|||+||+|++.|.||++||++||+|+|.|+||||||
T Consensus 13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 91 (167)
T 3fn1_B 13 SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI 91 (167)
T ss_dssp CHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCC
Confidence 44789999999987 6789999865 57899999999 8999999999999999999999999999999999999999
Q ss_pred cCCCCeEeccCCCC------CCCCccchHHHHHHHHHHhhcC-CCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhc
Q 029998 78 DEMSGSVCLDVINQ------SWSPMFDLLNIFESFLPQLLLY-PNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAK 148 (184)
Q Consensus 78 ~~~~G~icl~~l~~------~W~p~~~i~~iL~~~i~~ll~~-p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~ 148 (184)
+ .+|.||+++|.. +|+|+++|.+||.+ |++||.+ |++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus 92 ~-~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~-i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 92 T-ETGEICLSLLREHSIDGTGWAPTRTLKDVVWG-LNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp C-TTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHH-HHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred C-CCCEEechhhccCCCCCCCCCCcCcHHHHHHH-HHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9 599999999975 79999999999988 9999999 69999999999999999999999999999999995
No 31
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.1e-45 Score=287.46 Aligned_cols=143 Identities=25% Similarity=0.531 Sum_probs=134.6
Q ss_pred CCc-hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccccc
Q 029998 1 MSS-PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (184)
Q Consensus 1 Mss-~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (184)
|++ +.+||++|++.+ ++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 20 M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 99 (169)
T 1yrv_A 20 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPN 99 (169)
T ss_dssp GGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCc
Confidence 665 789999999987 7789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEeccCCC--CCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHH
Q 029998 77 VDEMSGSVCLDVIN--QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCER 145 (184)
Q Consensus 77 V~~~~G~icl~~l~--~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~ 145 (184)
|+..+|.||+++|. ++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++ |+++++
T Consensus 100 I~~~~G~ICL~iL~~~~~WsP~~ti~~vL~s-I~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 100 VDPHTGQPCIDFLDNPEKWNTNYTLSSILLA-LQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp BCTTTCCBCCHHHHCGGGCCTTCCHHHHHHH-HHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred ccCCCCeEeehhhcCCcCCCCcCCHHHHHHH-HHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 93369999999998 899999999999988 99999999999999999999999999999998 888754
No 32
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=5.5e-45 Score=288.48 Aligned_cols=144 Identities=28% Similarity=0.593 Sum_probs=136.2
Q ss_pred hHHHHHHHHHhc---CCCCceEE-ecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVE-TINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~-~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (184)
+.+||++||+.+ ++.|+++. +.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 8 a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~ 87 (183)
T 3rz3_A 8 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE 87 (183)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCC
Confidence 789999999987 77899998 56779999999999999999999999999999999999999999999999999995
Q ss_pred CCCeEeccCCC-------------CCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHh------CHHHHHHHHH
Q 029998 80 MSGSVCLDVIN-------------QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMK------DRKQYDQKVK 140 (184)
Q Consensus 80 ~~G~icl~~l~-------------~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~------~~~~f~~~~r 140 (184)
+|.||+++|. ++|+|+++|++||.+ |++||.+|++++|+|.+|+.+|++ ++++|.++||
T Consensus 88 -~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~s-i~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~v~ 165 (183)
T 3rz3_A 88 -TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS-VISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIR 165 (183)
T ss_dssp -TSBBCCTTC--------------CCCCTTCCHHHHHHH-HHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred -CCcEehhhcCcccccccccccccCCCCCcCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHHHH
Confidence 9999999996 789999999999988 999999999999999999999988 7899999999
Q ss_pred HHHHHHhcc
Q 029998 141 EYCERYAKK 149 (184)
Q Consensus 141 ~~~~~~a~~ 149 (184)
++++++...
T Consensus 166 ~~v~~s~~~ 174 (183)
T 3rz3_A 166 KQVLGTKVD 174 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 33
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=8.8e-45 Score=281.74 Aligned_cols=142 Identities=29% Similarity=0.620 Sum_probs=135.0
Q ss_pred CCchHHHHHHHHHhc-CCCCceEE-ecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccccccc
Q 029998 1 MSSPSKRRDMDVMKL-MMSDYNVE-TINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (184)
Q Consensus 1 Mss~~kRL~kEl~~l-~~~gi~v~-~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 78 (184)
|+.+.+||++|++++ +++|+++. +.++|+++|+++| ||++|||+||+|++.|.||++||++||+|+|.|+||||||+
T Consensus 4 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (160)
T 1y8x_A 4 ASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 82 (160)
T ss_dssp CCHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred ccHHHHHHHHHHHhcCCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCC
Confidence 556899999999998 56799998 7788999999998 99999999999999999999999999999999999999999
Q ss_pred CCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHH
Q 029998 79 EMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCER 145 (184)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~ 145 (184)
. +|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|++.
T Consensus 83 ~-~G~iCl~iL~~~W~p~~~i~~vL~~-i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~ 147 (160)
T 1y8x_A 83 L-EGNVCLNILREDWKPVLTINSIIYG-LQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 147 (160)
T ss_dssp T-TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred C-CCeEEcccchhhccCCCCHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 5 8999999999999999999999988 999999999999999999999999999999999999874
No 34
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=1.4e-45 Score=288.98 Aligned_cols=149 Identities=54% Similarity=0.948 Sum_probs=136.6
Q ss_pred hHHHHHHHHHhcCCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCCCCe
Q 029998 4 PSKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGS 83 (184)
Q Consensus 4 ~~kRL~kEl~~l~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G~ 83 (184)
+.+||++|++++....+.| +.++|++.|+++|.||++|||+||+|++.|.||++||++||+|+|.|+||||||+..+|.
T Consensus 13 ~~~RL~~El~~l~~~~~~v-~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~ 91 (171)
T 1yf9_A 13 SNRRREMDYMRLCNSTRKV-YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGS 91 (171)
T ss_dssp CCHHHHHHHHHHHSSSSCE-EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred HHHHHHHHHHHHHhCCCCC-CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCe
Confidence 5799999999984333445 457899999999999999999999999999999999999999999999999999955999
Q ss_pred EeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcccccc
Q 029998 84 VCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENIV 153 (184)
Q Consensus 84 icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~~~ 153 (184)
||+++|.++|+|+++|.+||.++|+.||.+|++++|+|.+|+++|++|+++|.++||+|+++||+.....
T Consensus 92 iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~~~~~~ 161 (171)
T 1yf9_A 92 VCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHATPQKAL 161 (171)
T ss_dssp BCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHH
T ss_pred EeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcChhhHh
Confidence 9999999999999999999988348999999999999999999999999999999999999999975443
No 35
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=1.2e-44 Score=284.04 Aligned_cols=147 Identities=25% Similarity=0.512 Sum_probs=135.5
Q ss_pred CCc-hHHHHHHHHHhcC-----------CC---CceEEe-cCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCC
Q 029998 1 MSS-PSKRRDMDVMKLM-----------MS---DYNVET-INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSP 64 (184)
Q Consensus 1 Mss-~~kRL~kEl~~l~-----------~~---gi~v~~-~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP 64 (184)
|++ +.+||++||+.+. +. ++.+.+ .++|+++|+++|.||++|||+||+|+|+|.||++||++||
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP 82 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence 666 7899999999751 22 356677 7789999999999999999999999999999999999999
Q ss_pred eeeeec-ccccccccCCCCeEeccCCC-CCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHh-CHHHHHHHHHH
Q 029998 65 SIGFVN-KIYHPNVDEMSGSVCLDVIN-QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMK-DRKQYDQKVKE 141 (184)
Q Consensus 65 ~v~f~t-~i~HPnV~~~~G~icl~~l~-~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~-~~~~f~~~~r~ 141 (184)
+|+|.| +||||||+..+|.||+++|. ++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++ |+++|.++||+
T Consensus 83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~s-i~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~ 161 (172)
T 2y9m_A 83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHA-VWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKY 161 (172)
T ss_dssp EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHH
T ss_pred EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHH
Confidence 999999 99999996458999999998 899999999999988 999999999999999999999999 99999999999
Q ss_pred HHHHHhc
Q 029998 142 YCERYAK 148 (184)
Q Consensus 142 ~~~~~a~ 148 (184)
|+++++.
T Consensus 162 ~~~~~~~ 168 (172)
T 2y9m_A 162 FLAERER 168 (172)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9999986
No 36
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=6.8e-45 Score=280.61 Aligned_cols=146 Identities=33% Similarity=0.649 Sum_probs=131.9
Q ss_pred CCchHHHHHHHHHhc---CCCCceEEe-cCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccccc
Q 029998 1 MSSPSKRRDMDVMKL---MMSDYNVET-INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (184)
Q Consensus 1 Mss~~kRL~kEl~~l---~~~gi~v~~-~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (184)
|+ +.+||++|++.+ ++.|+.+.+ .++|++.|+++|. |++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 1 m~-a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 78 (154)
T 1c4z_D 1 MA-ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN 78 (154)
T ss_dssp ----CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred Cc-HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCcccc
Confidence 43 579999999988 567888654 5679999999998 99999999999999999999999999999999999999
Q ss_pred ccCCCCeEeccCCC-CCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhccc
Q 029998 77 VDEMSGSVCLDVIN-QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKE 150 (184)
Q Consensus 77 V~~~~G~icl~~l~-~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~ 150 (184)
|+. +|.||+++|. ++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+++
T Consensus 79 v~~-~G~iCl~iL~~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~~ 151 (154)
T 1c4z_D 79 IDE-KGQVCLPVISAENWKPATKTDQVIQS-LIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKR 151 (154)
T ss_dssp BCT-TCBBCCTTTSSSSCCTTCCHHHHHHH-HHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC----
T ss_pred CCC-CCEEECCCCCCCCCCCCCcHHHHHHH-HHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhcccC
Confidence 994 9999999996 899999999999988 99999999999999999999999999999999999999999865
No 37
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.8e-44 Score=281.51 Aligned_cols=141 Identities=28% Similarity=0.585 Sum_probs=134.1
Q ss_pred chHHHHHHHHHhc-CCCCceEE-ecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 3 SPSKRRDMDVMKL-MMSDYNVE-TINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 3 s~~kRL~kEl~~l-~~~gi~v~-~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
.+.+||++||+++ +++|+++. +.++|+++|+++| ||++|||+||+|++.|.||++||++||+|+|.|+||||||+.
T Consensus 26 ~~~~RL~kEl~~l~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~- 103 (180)
T 2nvu_C 26 AAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL- 103 (180)
T ss_dssp HHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-
T ss_pred HHHHHHHHHHHhcCCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCC-
Confidence 3789999999998 66799998 7788999999998 999999999999999999999999999999999999999995
Q ss_pred CCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHH
Q 029998 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY 146 (184)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~ 146 (184)
+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+.+|++|+++|.++||+|++..
T Consensus 104 ~G~iCl~iL~~~W~p~~~i~~vL~s-i~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~ 168 (180)
T 2nvu_C 104 EGNVALNILREDWKPVLTINSIIYG-LQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 168 (180)
T ss_dssp TSBBCCGGGTTSCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSE
T ss_pred CCcEEcccccccCCCCCCHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhC
Confidence 8999999999999999999999988 9999999999999999999999999999999999998753
No 38
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=2.8e-44 Score=281.94 Aligned_cols=137 Identities=32% Similarity=0.662 Sum_probs=103.6
Q ss_pred hHHHHHHHHHhc---CCCCceEEecC-CCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETIN-DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~-~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 79 (184)
+.+||++||++| ++.||++.+.+ +|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 18 ~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~~ 97 (172)
T 2awf_A 18 GSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK 97 (172)
T ss_dssp THHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCCC
Confidence 789999999987 77899999876 69999999999999999999999999999999999999999999999999995
Q ss_pred CCCeEeccCCC-------------CCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHH-HHHHHHHHH
Q 029998 80 MSGSVCLDVIN-------------QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRK-QYDQKVKEY 142 (184)
Q Consensus 80 ~~G~icl~~l~-------------~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~-~f~~~~r~~ 142 (184)
+|+||+++|. ++|+|+++|++||.+ |++||.+|++++|+|.+|+++|++|++ +|.++||+|
T Consensus 98 -~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~s-I~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 98 -NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMIS-VISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp -TCBBCCGGGSCC---------CTTSCCTTCCHHHHHHH-HHHHHSCC-----------------------------
T ss_pred -CCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHH-HHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 8999999996 689999999999988 999999999999999999999999999 999999976
No 39
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=3.6e-43 Score=279.54 Aligned_cols=143 Identities=31% Similarity=0.587 Sum_probs=135.0
Q ss_pred CchHHHHHHHHHhc-CCCCceEE----ecCCCcc---eEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccc
Q 029998 2 SSPSKRRDMDVMKL-MMSDYNVE----TINDGLN---EFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (184)
Q Consensus 2 ss~~kRL~kEl~~l-~~~gi~v~----~~~~nl~---~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (184)
+++.+||++||+++ +++|+++. +.++|++ +|+++|. |++|||+||+|++.|.||++||++||+|+|.|+||
T Consensus 28 s~a~~RL~kEl~~l~~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 106 (190)
T 3o2u_A 28 SAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIF 106 (190)
T ss_dssp CHHHHHHHHHHHTCCCCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred cHHHHHHHHHHHhccCCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcc
Confidence 45789999999998 56799998 7888999 9999997 88899999999999999999999999999999999
Q ss_pred cccccCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHh
Q 029998 74 HPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147 (184)
Q Consensus 74 HPnV~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a 147 (184)
||||+. +|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|++.+.
T Consensus 107 HPnV~~-~G~iCl~iL~~~W~p~~~i~~vL~~-i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~~ 178 (190)
T 3o2u_A 107 HPNIDL-KGNVCLNILREDWSPALDLQSIITG-LLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGS 178 (190)
T ss_dssp CTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTCE
T ss_pred cCCCCC-CCeEechhccCCCCCCCCHHHHHHH-HHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhcC
Confidence 999994 9999999999999999999999988 99999999999999999999999999999999999996554
No 40
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=5.4e-43 Score=306.11 Aligned_cols=147 Identities=31% Similarity=0.684 Sum_probs=141.6
Q ss_pred CchHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccccccc
Q 029998 2 SSPSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (184)
Q Consensus 2 ss~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 78 (184)
+.|.+||++|++.+ +++|+++.|.++|++.|+++|.||++|||+||+|++.|.||++||++||+|+|.|+||||||+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 81 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence 34789999999987 778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhccc
Q 029998 79 EMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKE 150 (184)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~ 150 (184)
. +|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+|+++|++|+++|.++||+|+++||+..
T Consensus 82 ~-~G~iCl~il~~~W~p~~~i~~vL~~-i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~~ 151 (399)
T 4ddg_A 82 S-NGSISLDILRSQWSPALTISKVLLS-ICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMGG 151 (399)
T ss_dssp T-TCBBCCGGGTTSCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSCT
T ss_pred C-CCeEeCcccccCCCccccHHHHHHH-HHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhccc
Confidence 4 9999999999999999999999988 99999999999999999999999999999999999999999874
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.2e-42 Score=271.39 Aligned_cols=140 Identities=23% Similarity=0.455 Sum_probs=131.0
Q ss_pred CCc-hHHHHHHHHHhc---C------------CCCceEEecCCCcceEEEEEeCCCCCCCC--CCEEEEEEEcCCCCCCC
Q 029998 1 MSS-PSKRRDMDVMKL---M------------MSDYNVETINDGLNEFNVEFHGPKESLYE--GGVWKIRVELPDAYPYK 62 (184)
Q Consensus 1 Mss-~~kRL~kEl~~l---~------------~~gi~v~~~~~nl~~w~~~i~Gp~~tpye--gg~f~~~i~fp~~YP~~ 62 (184)
||+ +.+||++|++.+ + +.++.+.+.++|+++|+++|.||++|||+ ||.|++.|.||++||++
T Consensus 5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~ 84 (167)
T 4ds2_A 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE 84 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence 776 789999999987 4 56889999999999999999999999999 99999999999999999
Q ss_pred CCeeeeecccccccccCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcC--CCCCCCccHHHHHHHHhCHHHHHHHHH
Q 029998 63 SPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLY--PNPSDPLNGDAASLMMKDRKQYDQKVK 140 (184)
Q Consensus 63 pP~v~f~t~i~HPnV~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~--p~~~~p~N~ea~~l~~~~~~~f~~~~r 140 (184)
||+|+|.|+||||||+ .+|.||+++|.++|+|++++.++|+.+|+.|+.. |++++|+|.+|+++|++|+++|.++||
T Consensus 85 pP~v~f~t~i~HPnv~-~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vr 163 (167)
T 4ds2_A 85 PPTVRFVTPVYSPLVT-GEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163 (167)
T ss_dssp CCEEEESSCCCCSSCC-TTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHT
T ss_pred CCEEEEeCCcccccCC-CCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHh
Confidence 9999999999999999 5999999999999999999999877768888875 899999999999999999999999998
Q ss_pred H
Q 029998 141 E 141 (184)
Q Consensus 141 ~ 141 (184)
+
T Consensus 164 r 164 (167)
T 4ds2_A 164 R 164 (167)
T ss_dssp T
T ss_pred h
Confidence 3
No 42
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=274.68 Aligned_cols=150 Identities=23% Similarity=0.489 Sum_probs=136.3
Q ss_pred hHHHHHHHHHhc---CCC----CceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecc-----
Q 029998 4 PSKRRDMDVMKL---MMS----DYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNK----- 71 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~----gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~----- 71 (184)
+.+||++|++.+ ++. ++.+.+.++|++.|+++|.||.+|||+||+|+|.|.||++||++||+|+|.|+
T Consensus 77 ~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ 156 (323)
T 3ceg_A 77 RARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSV 156 (323)
T ss_dssp HHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcc
Confidence 789999999987 444 45677889999999999999999999999999999999999999999999998
Q ss_pred cccccccCCCCeEeccCCC-------CCCCCcc-chHHHHHHHHHHhhc--CCCCCCCccHHH--HHHHHhCHHHHHHHH
Q 029998 72 IYHPNVDEMSGSVCLDVIN-------QSWSPMF-DLLNIFESFLPQLLL--YPNPSDPLNGDA--ASLMMKDRKQYDQKV 139 (184)
Q Consensus 72 i~HPnV~~~~G~icl~~l~-------~~W~p~~-~i~~iL~~~i~~ll~--~p~~~~p~N~ea--~~l~~~~~~~f~~~~ 139 (184)
||||||+ .+|.||+++|. ++|+|++ +|.+||.+ |++||. +|++++|+|.+| +.+|.+|+..|.++|
T Consensus 157 ifHPNV~-~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLls-IqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~v 234 (323)
T 3ceg_A 157 RFNPNLY-NDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVS-VQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNI 234 (323)
T ss_dssp CCBTTBC-TTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHH-HHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHH
T ss_pred cccCCCC-cCCeEechhhccccCCCcCCCCcCcCCHHHHHHH-HHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHH
Confidence 9999999 59999999997 6899999 89999988 999996 777899999987 679999999999999
Q ss_pred HHHHHHHhcccccccC
Q 029998 140 KEYCERYAKKENIVNS 155 (184)
Q Consensus 140 r~~~~~~a~~~~~~~~ 155 (184)
|+|+++||+......-
T Consensus 235 r~~t~k~A~~~~l~~P 250 (323)
T 3ceg_A 235 RQATVKWAMLEQIRNP 250 (323)
T ss_dssp HHHHHHHTTHHHHHSC
T ss_pred HHHHHHHhhHHHHhCC
Confidence 9999999987655543
No 43
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=3.1e-39 Score=241.11 Aligned_cols=115 Identities=20% Similarity=0.472 Sum_probs=101.3
Q ss_pred CCchHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccc-cccc
Q 029998 1 MSSPSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKI-YHPN 76 (184)
Q Consensus 1 Mss~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPn 76 (184)
|+++.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||||
T Consensus 4 m~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn 83 (125)
T 2fo3_A 4 MGNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTH 83 (125)
T ss_dssp -----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCc
Confidence 788899999999987 677999999999999999999999999999999999999999999999999999996 9999
Q ss_pred ccCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCCC
Q 029998 77 VDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPS 117 (184)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~ 117 (184)
|+ .+|+||+++|.++|+|+++|++||.+ |++||.+|+..
T Consensus 84 v~-~~G~iCl~iL~~~W~P~~~i~~vl~s-i~~ll~~p~~~ 122 (125)
T 2fo3_A 84 VY-SNGDICLSLLGDDYNPSLSISGLVLS-IISMLSSAKEK 122 (125)
T ss_dssp BC-TTSBBCCGGGTTTCCTTCCHHHHHHH-HHHHHC-----
T ss_pred CC-CCCEEEchhcCCCCCCCCcHHHHHHH-HHHHHhCcccc
Confidence 99 49999999999999999999999988 99999999865
No 44
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=3.7e-39 Score=249.09 Aligned_cols=126 Identities=19% Similarity=0.329 Sum_probs=114.2
Q ss_pred chHHHHHHHHHhc----CCCCceEEecC-C--CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccc
Q 029998 3 SPSKRRDMDVMKL----MMSDYNVETIN-D--GLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (184)
Q Consensus 3 s~~kRL~kEl~~l----~~~gi~v~~~~-~--nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 75 (184)
++.+||++||+++ +++|+++.+.. + |++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||
T Consensus 21 ~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HP 100 (156)
T 2q0v_A 21 PRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMS 100 (156)
T ss_dssp CHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccC
Confidence 3789999999986 46689998854 3 599999999999999999999999999999999999999999999999
Q ss_pred cccCCCCeE---eccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhC
Q 029998 76 NVDEMSGSV---CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKD 131 (184)
Q Consensus 76 nV~~~~G~i---cl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~ 131 (184)
||+. +|+| |+++|. +|+|+++|++||.+ |++||.+|++++++|.+|+.+|.+|
T Consensus 101 NV~~-~G~icisCL~iL~-~WsP~~ti~~vL~s-I~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 101 CVDN-CGRVIKNNLHILK-NWNRNYTIETILIS-LRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp TBCT-TSBBCGGGSHHHH-TCCTTCCHHHHHHH-HHHHTTSTTTTTCCCCCTTCBC---
T ss_pred CCcc-CCeEehhhccccc-CCCCcCcHHHHHHH-HHHHHhCCCCCCcCChHHHHHhhhC
Confidence 9995 8999 888887 59999999999988 9999999999999999999998765
No 45
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.6e-38 Score=238.50 Aligned_cols=114 Identities=21% Similarity=0.485 Sum_probs=107.7
Q ss_pred CCchHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccc-cccc
Q 029998 1 MSSPSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKI-YHPN 76 (184)
Q Consensus 1 Mss~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPn 76 (184)
|+++.+||++|++++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||||
T Consensus 18 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn 97 (136)
T 2h2y_A 18 LGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTH 97 (136)
T ss_dssp TTSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCc
Confidence 456889999999987 678999999999999999999999999999999999999999999999999999996 9999
Q ss_pred ccCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhcCCCC
Q 029998 77 VDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNP 116 (184)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~ 116 (184)
|+. +|+||+++|.++|+|+++|.+||.+ |++||.+|+.
T Consensus 98 v~~-~G~ICl~iL~~~WsP~~ti~~vL~s-i~sll~~p~~ 135 (136)
T 2h2y_A 98 VYS-NGDICLSVLGDDYNPSLSISGLILS-IISMLSSAKE 135 (136)
T ss_dssp BCT-TCCBCCGGGTTTCCTTCCHHHHHHH-HHHHHSSSCC
T ss_pred CCC-CCEEECccccCCCCCCCcHHHHHHH-HHHHHhCcCc
Confidence 994 9999999999999999999999988 9999999874
No 46
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=1.8e-39 Score=246.12 Aligned_cols=126 Identities=18% Similarity=0.317 Sum_probs=112.9
Q ss_pred CCc--hHHHHHHHHHhc----CCCCceEEecC-C--CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecc
Q 029998 1 MSS--PSKRRDMDVMKL----MMSDYNVETIN-D--GLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNK 71 (184)
Q Consensus 1 Mss--~~kRL~kEl~~l----~~~gi~v~~~~-~--nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 71 (184)
|++ +.+||++|++++ ++.|+++.+.. + |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+
T Consensus 2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 775 679999999986 46799998854 3 49999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCeE--eccCCCCCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHH
Q 029998 72 IYHPNVDEMSGSV--CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLM 128 (184)
Q Consensus 72 i~HPnV~~~~G~i--cl~~l~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~ 128 (184)
||||||+..+|.| |+++|. +|+|+++|++||.+ |++||.+|++++|+|.+|+.+|
T Consensus 82 i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~-i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 82 INLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLD-LRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp CCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHH-HHHHHTSHHHHTSCCCCTTCBC
T ss_pred cccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHH-HHHHHcCCCCCCCCCcchhhcC
Confidence 9999999645999 899886 89999999999988 9999999999999999988654
No 47
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=3.8e-38 Score=244.25 Aligned_cols=121 Identities=19% Similarity=0.338 Sum_probs=110.8
Q ss_pred hHHHHHHHHHhc---CCCC-ceEEec-CCC--cceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccccc
Q 029998 4 PSKRRDMDVMKL---MMSD-YNVETI-NDG--LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~g-i~v~~~-~~n--l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (184)
+.+||++|++++ ++.| +++.+. ++| +++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 26 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 105 (160)
T 2a4d_A 26 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 105 (160)
T ss_dssp HHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCC
Confidence 689999999987 4556 778774 444 999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEeccCCC--CCCCCccchHHHHHHHHHHhhc-CCCCCCCccHHHH
Q 029998 77 VDEMSGSVCLDVIN--QSWSPMFDLLNIFESFLPQLLL-YPNPSDPLNGDAA 125 (184)
Q Consensus 77 V~~~~G~icl~~l~--~~W~p~~~i~~iL~~~i~~ll~-~p~~~~p~N~ea~ 125 (184)
|+..+|+||+++|. ++|+|+++|++||.+ |++||. +|++++|+|.||+
T Consensus 106 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~s-I~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 106 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQE-LRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp BCTTTCBBCGGGSHHHHTCCTTCCHHHHHHH-HHHHHTSTTTTTCCCCCTTC
T ss_pred EECCCCEEehhhcCCccCCCccCcHHHHHHH-HHHHHccCCCCCCCCChhhc
Confidence 99559999999998 899999999999988 999995 7999999999987
No 48
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.1e-37 Score=234.28 Aligned_cols=110 Identities=25% Similarity=0.600 Sum_probs=102.9
Q ss_pred CCchHHHHHHHHHhc---CCCCceEE--ecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccc--
Q 029998 1 MSSPSKRRDMDVMKL---MMSDYNVE--TINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIY-- 73 (184)
Q Consensus 1 Mss~~kRL~kEl~~l---~~~gi~v~--~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~-- 73 (184)
|+++++||++|++++ ++.|+++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 20 Ms~~~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~ 99 (136)
T 2a7l_A 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPV 99 (136)
T ss_dssp GTTSCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCC
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCC
Confidence 777679999999987 67799865 78889999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCeEeccCCCCCCCCccchHHHHHHHHHHhhc
Q 029998 74 HPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLL 112 (184)
Q Consensus 74 HPnV~~~~G~icl~~l~~~W~p~~~i~~iL~~~i~~ll~ 112 (184)
||||+. +|+||+++|.++|+|+++|++||.+ |++||.
T Consensus 100 HPNV~~-~G~ICL~iL~~~WsP~~ti~~vL~s-I~slL~ 136 (136)
T 2a7l_A 100 HPHVYS-NGHICLSILTEDWSPALSVQSVCLS-IISMLS 136 (136)
T ss_dssp BTTBCT-TCBBCCGGGTTTCCTTSCHHHHHHH-HHHHTC
T ss_pred CccCCC-CCeEEchhcCCCCCCCCcHHHHHHH-HHHHhC
Confidence 999994 9999999999999999999999988 999873
No 49
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=242.84 Aligned_cols=121 Identities=19% Similarity=0.335 Sum_probs=110.6
Q ss_pred hHHHHHHHHHhc---CCCC-ceEEe-cCCC--cceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeeccccccc
Q 029998 4 PSKRRDMDVMKL---MMSD-YNVET-INDG--LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~g-i~v~~-~~~n--l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 76 (184)
+.+||++||+++ ++.| +++.+ .++| +++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 36 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 115 (170)
T 2hlw_A 36 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 115 (170)
T ss_dssp HHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSS
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCC
Confidence 689999999987 4556 67777 4444 999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEeccCCC--CCCCCccchHHHHHHHHHHhhc-CCCCCCCccHHHH
Q 029998 77 VDEMSGSVCLDVIN--QSWSPMFDLLNIFESFLPQLLL-YPNPSDPLNGDAA 125 (184)
Q Consensus 77 V~~~~G~icl~~l~--~~W~p~~~i~~iL~~~i~~ll~-~p~~~~p~N~ea~ 125 (184)
|+..+|.||+++|. ++|+|+++|++||.+ |++||. .|++++|+|.||+
T Consensus 116 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~s-I~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 116 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQE-LRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp BCSSSCBBCTTTCHHHHTCCSSCCHHHHHHH-HHHHHHSTTTSSSCCCSSCC
T ss_pred EeCCCCEEEhhhcCCCCCCCccCcHHHHHHH-HHHHHccCCCCCCCCCcccc
Confidence 98559999999998 899999999999988 999997 5999999999886
No 50
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=1.1e-36 Score=241.45 Aligned_cols=139 Identities=18% Similarity=0.325 Sum_probs=123.0
Q ss_pred CCc-hHHHHHHHHHhc---C---CCCceEEecCCCcceEEEEEeCC-CCCCCCC-----------CEEEEEEEcCCCCCC
Q 029998 1 MSS-PSKRRDMDVMKL---M---MSDYNVETINDGLNEFNVEFHGP-KESLYEG-----------GVWKIRVELPDAYPY 61 (184)
Q Consensus 1 Mss-~~kRL~kEl~~l---~---~~gi~v~~~~~nl~~w~~~i~Gp-~~tpyeg-----------g~f~~~i~fp~~YP~ 61 (184)
|++ +.+||++||+++ + +.++++.+.++|++.|+++|.|| ++|||+| |.|+++|.||++||+
T Consensus 24 ~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~ 103 (186)
T 1zuo_A 24 GSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF 103 (186)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCC
Confidence 444 689999999987 3 47899999999999999999998 9999998 899999999999999
Q ss_pred CCCeeeeecccccc-cccCCCCeEeccCCC-CCCCCccchHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHH
Q 029998 62 KSPSIGFVNKIYHP-NVDEMSGSVCLDVIN-QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKV 139 (184)
Q Consensus 62 ~pP~v~f~t~i~HP-nV~~~~G~icl~~l~-~~W~p~~~i~~iL~~~i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~ 139 (184)
+||+|+|.|++||| ||+ .+|.||+++|. ++|+|+++|++||.+ |++||.+|+... .|..++.+|.+++
T Consensus 104 ~PP~V~f~tpi~hPnnV~-~~G~ICL~iL~~~~WsP~~ti~~VL~s-I~slL~~p~a~~--------~~~~~~~~Y~~~~ 173 (186)
T 1zuo_A 104 DPPFVRVVLPVLSGGYVL-GGGALCMELLTKQGWSSAYSIESVIMQ-INATLVKGKARV--------QFGANKNQYNLAR 173 (186)
T ss_dssp SCCEEEEEESCEESTTBC-GGGBBCCGGGSTTTCCTTSCHHHHHHH-HHHHHHHTTCEE--------CTTCCTTCCCHHH
T ss_pred CCCeEEEeCCccCCCccC-CCCcEEeccCCCCCCCCcCcHHHHHHH-HHHHHcCCChhH--------hhccCHHHHhHHH
Confidence 99999999999999 699 59999999997 789999999999988 999999886532 4556678898888
Q ss_pred HHHHHHHhcc
Q 029998 140 KEYCERYAKK 149 (184)
Q Consensus 140 r~~~~~~a~~ 149 (184)
++++.+.+.+
T Consensus 174 ~~~~~~~~~~ 183 (186)
T 1zuo_A 174 AQQSYNSIVQ 183 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 51
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-34 Score=229.26 Aligned_cols=131 Identities=18% Similarity=0.437 Sum_probs=107.3
Q ss_pred hHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCC
Q 029998 4 PSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80 (184)
Q Consensus 4 ~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~ 80 (184)
+.+||++|++++ ++.||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+ ||||+ .
T Consensus 15 a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~-~ 91 (187)
T 2f4w_A 15 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFK-C 91 (187)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceec-c
Confidence 679999999987 67899999999999999999999999999999999999999999999999999999 99999 4
Q ss_pred CCeEeccCC---CCCCCCccchHHHHHHHHHHhhcCCCCCCC---ccHHHHHHHHhCHHHHHHH
Q 029998 81 SGSVCLDVI---NQSWSPMFDLLNIFESFLPQLLLYPNPSDP---LNGDAASLMMKDRKQYDQK 138 (184)
Q Consensus 81 ~G~icl~~l---~~~W~p~~~i~~iL~~~i~~ll~~p~~~~p---~N~ea~~l~~~~~~~f~~~ 138 (184)
+|+||+++| .++|+|+++|.+||.+ |++||.+|++... ......++|..+...|..+
T Consensus 92 ~G~ICL~iL~~~~~~W~P~~ti~~vL~s-i~sll~~p~p~~g~~~~~~~~r~~~a~~s~~~~~~ 154 (187)
T 2f4w_A 92 NTRLCLSITDFHPDTWNPAWSVSTILTG-LLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLK 154 (187)
T ss_dssp TSCBC----------CCTTCCHHHHHHH-HHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEeeeccccCccCCCCcCcHHHHHHH-HHHHhcCCCCCCcccccChHHHHHHHHHHHHHhhc
Confidence 999999999 6899999999999988 9999999988643 2334445555444444433
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.92 E-value=1.5e-26 Score=178.08 Aligned_cols=99 Identities=19% Similarity=0.278 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCCCCceEEecCCCcceEEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCeeeeecc-cc
Q 029998 5 SKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGG----------VWKIRVELPDAYPYKSPSIGFVNK-IY 73 (184)
Q Consensus 5 ~kRL~kEl~~l~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg----------~f~~~i~fp~~YP~~pP~v~f~t~-i~ 73 (184)
.+||.+|++++.. ++.+..+|++.|.+++.||.||+|+|| .|.++|.||.+||++||+|+|.++ +|
T Consensus 34 ~~RL~eE~k~L~k---~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~ 110 (172)
T 2z6o_A 34 VQRLKEEYQSLIR---YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGK 110 (172)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred HHHHHHHHHHHHH---HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCC
Confidence 7999999998754 466677899999999999999999999 999999999999999999999998 99
Q ss_pred cccccCCCCeEeccCC-CC---CCCCccchHHHHHHHH
Q 029998 74 HPNVDEMSGSVCLDVI-NQ---SWSPMFDLLNIFESFL 107 (184)
Q Consensus 74 HPnV~~~~G~icl~~l-~~---~W~p~~~i~~iL~~~i 107 (184)
||||+. +|+|||++| +. .|+|.++|..+|..++
T Consensus 111 hpnmY~-~G~ICLdIL~kp~Ws~~~P~~~IahiL~lgl 147 (172)
T 2z6o_A 111 TAKMYR-GGKICLTDHFKPLWARNVPKFGLAHLMALGL 147 (172)
T ss_dssp CSSBCT-TSBBCCCTTHHHHHHHHTTSCCHHHHHHHTH
T ss_pred CCCCCC-CCcEechhhccccccccCCccCHHHHHhhcc
Confidence 999995 999999999 43 4669999999995543
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.76 E-value=1.7e-18 Score=133.81 Aligned_cols=110 Identities=22% Similarity=0.364 Sum_probs=88.5
Q ss_pred HHHHHHHHhc----C--CCCceEEecCCCcceEEEEEeCCCCCCCCCCE---EEEEEEcCCCCCCCCCeeeeec------
Q 029998 6 KRRDMDVMKL----M--MSDYNVETINDGLNEFNVEFHGPKESLYEGGV---WKIRVELPDAYPYKSPSIGFVN------ 70 (184)
Q Consensus 6 kRL~kEl~~l----~--~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~---f~~~i~fp~~YP~~pP~v~f~t------ 70 (184)
+|..+|+..+ + .+...+...++....+.+.+.|.-.++|+|+. |.+.|.||.+||++||.|.|.+
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 4455555543 1 12334455667777788888887779999999 8899999999999999998865
Q ss_pred -c---cc-cccccCCCCeEeccCCCCCCCC-ccchHHHHHHHHHHhhcCCCCCC
Q 029998 71 -K---IY-HPNVDEMSGSVCLDVINQSWSP-MFDLLNIFESFLPQLLLYPNPSD 118 (184)
Q Consensus 71 -~---i~-HPnV~~~~G~icl~~l~~~W~p-~~~i~~iL~~~i~~ll~~p~~~~ 118 (184)
+ |+ ||||| .+|+||+++|. +|++ +.+|.++|+. |+++|.+|+++.
T Consensus 111 ~~~~~I~~hpnVD-~~G~I~lpyL~-~W~p~~s~L~~ll~~-l~~lf~ep~~d~ 161 (162)
T 3r3q_A 111 TISSSLPIQEYID-SNGWIALPILH-AWDPAAMNLIMVVQE-LMSLLHEPPQDQ 161 (162)
T ss_dssp TSCTTSTHHHHBC-TTSBBCCGGGG-SCCGGGCCHHHHHHH-HHHTTSCCCCCC
T ss_pred ccccccCCCCCCC-CCCcEeCcccc-cCCCCcCcHHHHHHH-HHHHhcCCCCCC
Confidence 1 77 99999 59999999995 6988 6899999988 999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.64 E-value=1.6e-17 Score=125.36 Aligned_cols=99 Identities=17% Similarity=0.329 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCCCceEEecCCCcceEEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCeeeeecc-cc
Q 029998 5 SKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGG----------VWKIRVELPDAYPYKSPSIGFVNK-IY 73 (184)
Q Consensus 5 ~kRL~kEl~~l~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg----------~f~~~i~fp~~YP~~pP~v~f~t~-i~ 73 (184)
.+||..|+..|-. +|+...++-..|...+.||.||+|.|+ .|.++|.||.+||..||+|+|.+. .+
T Consensus 36 ~~RlkeEy~alI~---yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgk 112 (168)
T 3kpa_A 36 TARLKEEYASLIT---YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGK 112 (168)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred HHHHHHHHHHHHH---HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCc
Confidence 4789889886621 233333455789999999999999999 999999999999999999999995 89
Q ss_pred cccccCCCCeEeccCCC-CCC---CCccchHHHHHHHH
Q 029998 74 HPNVDEMSGSVCLDVIN-QSW---SPMFDLLNIFESFL 107 (184)
Q Consensus 74 HPnV~~~~G~icl~~l~-~~W---~p~~~i~~iL~~~i 107 (184)
|||++. +|+|||+++- .-| .|.++|...|..++
T Consensus 113 t~kmYr-~GkICLdIhwkPlW~~n~P~fGiahalalgl 149 (168)
T 3kpa_A 113 TVKMYR-GGKICMTTHFFPLWARNVPYFGISHVLALGL 149 (168)
T ss_dssp CSSEET-TTEECCCTTHHHHHHHTTTTCCHHHHHHHTH
T ss_pred CccccC-CCcEEeccccchhhHhcCCchhHHHHHHhcc
Confidence 999995 9999999861 222 34667777664433
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.42 E-value=2e-13 Score=103.72 Aligned_cols=78 Identities=26% Similarity=0.468 Sum_probs=68.1
Q ss_pred CCcceEEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCeeeeecc------cccccccCCCCeEeccCCCCCCCC-cc
Q 029998 27 DGLNEFNVEFHGPKESLYEGGVWK--IRVELPDAYPYKSPSIGFVNK------IYHPNVDEMSGSVCLDVINQSWSP-MF 97 (184)
Q Consensus 27 ~nl~~w~~~i~Gp~~tpyegg~f~--~~i~fp~~YP~~pP~v~f~t~------i~HPnV~~~~G~icl~~l~~~W~p-~~ 97 (184)
.++..|.++|. .+|+|+.|. +.|.||.+||+.||.| |.++ ..||||| .+|+||+..|.+ |++ ..
T Consensus 51 ~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd-~~G~i~lpyL~~-W~~~~s 123 (146)
T 3obq_A 51 RELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVD-ANGKIYLPYLHE-WKHPQS 123 (146)
T ss_dssp CEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBC-TTCBBCCHHHHT-CCTTTC
T ss_pred heEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCC-CCCCEecccccc-cCCCCC
Confidence 47899999997 689999998 5999999999999999 6655 5899999 599999999965 987 88
Q ss_pred chHHHHHHHHHHhhc
Q 029998 98 DLLNIFESFLPQLLL 112 (184)
Q Consensus 98 ~i~~iL~~~i~~ll~ 112 (184)
+|.++|.. ++.+|.
T Consensus 124 nL~~ll~~-l~~~F~ 137 (146)
T 3obq_A 124 DLLGLIQV-MIVVFG 137 (146)
T ss_dssp CHHHHHHH-HHHHHH
T ss_pred CHHHHHHH-HHHHHh
Confidence 99999988 777775
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.36 E-value=0.013 Score=42.34 Aligned_cols=68 Identities=12% Similarity=0.239 Sum_probs=42.2
Q ss_pred CCchHHHHHHHHHhc---CCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeec
Q 029998 1 MSSPSKRRDMDVMKL---MMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVN 70 (184)
Q Consensus 1 Mss~~kRL~kEl~~l---~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 70 (184)
|+....+...|+..| -+..+.+ .......+.+.|..-.+..-..-.+.+.|.||++||..||.|.+.+
T Consensus 8 m~~~~e~q~~EleaL~sIy~d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 8 MTDYGEEQRNELEALESIYPDSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred CCChHHHHHHHHHHHHHHccCceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 434456667777665 2333333 2333466667665322222234578999999999999999998654
No 57
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.17 Score=36.73 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=29.7
Q ss_pred cceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeec
Q 029998 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVN 70 (184)
Q Consensus 29 l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t 70 (184)
...+.+.|.+..+ .-..-.+.+.|.+|.+||..||.|.+.+
T Consensus 45 ~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 45 QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 4667778863222 2123478899999999999999998754
No 58
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.89 E-value=0.25 Score=35.39 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=38.0
Q ss_pred HHHHHHHHhc----CC-CCceEEe-cCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeee
Q 029998 6 KRRDMDVMKL----MM-SDYNVET-INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFV 69 (184)
Q Consensus 6 kRL~kEl~~l----~~-~gi~v~~-~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~ 69 (184)
.+.+.|+..| +. ..+.+.- ...+...+.+.|.. .+..=..-.+.+.|.+|.+||..||.|...
T Consensus 10 e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 10 EPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp HHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 4455666655 32 2343321 11234678888863 221111247899999999999999998755
No 59
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=93.74 E-value=0.34 Score=34.58 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=39.0
Q ss_pred HHHHHHHHhc---CCCCceEEecC--CCcceEEEEEeCCCCCCC--CCCEEEEEEEcCCCCCCCCCeeeeec
Q 029998 6 KRRDMDVMKL---MMSDYNVETIN--DGLNEFNVEFHGPKESLY--EGGVWKIRVELPDAYPYKSPSIGFVN 70 (184)
Q Consensus 6 kRL~kEl~~l---~~~gi~v~~~~--~nl~~w~~~i~Gp~~tpy--egg~f~~~i~fp~~YP~~pP~v~f~t 70 (184)
.+++.|+..| -...+.+.-.. .....+.+.|..+.+..- ..-.+.+.|.||++||..+|.|...+
T Consensus 11 e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 11 WVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp CHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 5567777655 23344443221 124455566653222111 12478899999999999999998775
No 60
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=91.75 E-value=1 Score=32.33 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=27.4
Q ss_pred cceEEEEEeCCCC-C-CCCCCEEEEEEEcCCCCCCCCCeeeee
Q 029998 29 LNEFNVEFHGPKE-S-LYEGGVWKIRVELPDAYPYKSPSIGFV 69 (184)
Q Consensus 29 l~~w~~~i~Gp~~-t-pyegg~f~~~i~fp~~YP~~pP~v~f~ 69 (184)
...+.+.|. +.+ . .-..-.+.+.|.||++||..+|.|.+.
T Consensus 44 ~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 44 PPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp CCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred CcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence 345666665 322 1 111246899999999999999999874
No 61
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=89.63 E-value=2.9 Score=32.26 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCCCceEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccccccccCCCCeEe
Q 029998 6 KRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVC 85 (184)
Q Consensus 6 kRL~kEl~~l~~~gi~v~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~~G~ic 85 (184)
.||.+|+..+.=.- +.-.+.++....+.+..- .|....++|.++.+||..||.+...-|+ |.
T Consensus 4 ~~li~Ei~~iGW~~--l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~--------- 65 (186)
T 3zqs_A 4 SSLIEEIGTLGWDK--LVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV--PF--------- 65 (186)
T ss_dssp CSHHHHHHHHCGGG--EEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS--CC---------
T ss_pred HHHHHHHHHhCCce--eeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc---------
Confidence 35777777663221 222345788888888743 3688999999999999999988654332 11
Q ss_pred ccCCCCCCCCccchHHHHHH
Q 029998 86 LDVINQSWSPMFDLLNIFES 105 (184)
Q Consensus 86 l~~l~~~W~p~~~i~~iL~~ 105 (184)
.-.|++..++..++..
T Consensus 66 ----~~~w~~~ssL~~v~~q 81 (186)
T 3zqs_A 66 ----CASWTPQSSLISIYSQ 81 (186)
T ss_dssp ----CCCCCTTCCHHHHHHH
T ss_pred ----ccccCCCccHHHHHHH
Confidence 1269988899988876
No 62
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=87.93 E-value=0.69 Score=34.38 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.7
Q ss_pred EEEEEEEcCCCCCCCCCeeeeec
Q 029998 48 VWKIRVELPDAYPYKSPSIGFVN 70 (184)
Q Consensus 48 ~f~~~i~fp~~YP~~pP~v~f~t 70 (184)
.+.+.|.+|.+||..+|.|...+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 79999999999999999998654
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=86.49 E-value=0.53 Score=34.80 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.8
Q ss_pred CEEEEEEEcCCCCCCCCCeeeeec
Q 029998 47 GVWKIRVELPDAYPYKSPSIGFVN 70 (184)
Q Consensus 47 g~f~~~i~fp~~YP~~pP~v~f~t 70 (184)
-.+.+.|.+|.+||..||.|....
T Consensus 73 ~~l~L~v~lP~~YP~~~P~i~l~~ 96 (152)
T 2dax_A 73 AMFSLACILPFKYPAVLPEITVRS 96 (152)
T ss_dssp EEEEEEEEECSSTTSSCCCCEEEC
T ss_pred ceEEEEEECCCCCCCCCCeEEEEc
Confidence 368899999999999999998664
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=79.88 E-value=0.42 Score=33.89 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred CCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhccccccc
Q 029998 113 YPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENIVN 154 (184)
Q Consensus 113 ~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~~~~ 154 (184)
--....|....+|++|+++++.|...+|.|+.-||.......
T Consensus 20 ~~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a~~~~~~~ 61 (108)
T 2cwb_A 20 GETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT 61 (108)
T ss_dssp ------------------------------------------
T ss_pred CcccCCchhHHHHHHHHhchhccccccccccccCcCCCCCCC
Confidence 334567889999999999999999999999988887655443
No 65
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=40.25 E-value=63 Score=24.47 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=33.2
Q ss_pred CCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeecccc
Q 029998 27 DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (184)
Q Consensus 27 ~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (184)
+.-+.|.|-+.|+.+.-...-+=++.+.+.+.||. |...+..+.|
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~PPF 74 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAPPF 74 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSSSE
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCCCC
Confidence 35789999999987654444566899999999975 6666655433
No 66
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=39.69 E-value=66 Score=23.47 Aligned_cols=43 Identities=9% Similarity=0.164 Sum_probs=32.6
Q ss_pred cceEE--EEEeCCCCCCCC-CCEEEEEEEcCCCCCCCCCeeeeecccc
Q 029998 29 LNEFN--VEFHGPKESLYE-GGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (184)
Q Consensus 29 l~~w~--~~i~Gp~~tpye-gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 73 (184)
++.|. +.+.|+.+.... .-+=++.+.+.+.|+. |...+..+.|
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n--p~r~v~~pPF 77 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN--PNRTFTDPPF 77 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS--CEEEECSTTC
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC--CeEEEcCCCc
Confidence 57998 889999888664 3555788899999884 7777766544
No 67
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=24.54 E-value=16 Score=27.65 Aligned_cols=9 Identities=0% Similarity=0.106 Sum_probs=4.1
Q ss_pred ccHHHHHHH
Q 029998 120 LNGDAASLM 128 (184)
Q Consensus 120 ~N~ea~~l~ 128 (184)
+..++-..+
T Consensus 121 leEeaIl~W 129 (177)
T 2ful_A 121 ISEEEIMRF 129 (177)
T ss_dssp SCHHHHHHH
T ss_pred hhhHHHHHH
Confidence 455544433
No 68
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=22.11 E-value=33 Score=26.67 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=14.0
Q ss_pred CCccHHHHHHHHhCH------HHHHHHHHHHHHHHhc
Q 029998 118 DPLNGDAASLMMKDR------KQYDQKVKEYCERYAK 148 (184)
Q Consensus 118 ~p~N~ea~~l~~~~~------~~f~~~~r~~~~~~a~ 148 (184)
+.+..++-..+..+. ....++++..++.|-.
T Consensus 113 DIleEEaIl~W~~~~s~~~~~~e~~k~v~~~~~pFI~ 149 (208)
T 2iu1_A 113 DLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIK 149 (208)
T ss_dssp TSSCHHHHHHHHHSCCCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHhcCCcccccHHHHHHHHHHHHHHHH
Confidence 345666555443321 2223345555555443
No 69
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=21.51 E-value=79 Score=24.45 Aligned_cols=25 Identities=28% Similarity=0.636 Sum_probs=22.0
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeeeee
Q 029998 45 EGGVWKIRVELPDAYPY-----KSPSIGFV 69 (184)
Q Consensus 45 egg~f~~~i~fp~~YP~-----~pP~v~f~ 69 (184)
+.|.|.|+-.+|--||. .||.|.|.
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 46899999999999998 78988876
No 70
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=21.28 E-value=1.1e+02 Score=19.90 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=37.0
Q ss_pred HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHhcccccc
Q 029998 107 LPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENIV 153 (184)
Q Consensus 107 i~~ll~~p~~~~p~N~ea~~l~~~~~~~f~~~~r~~~~~~a~~~~~~ 153 (184)
|+.|+..-++...+.+++..+..+=-..|...+-..+.+.|+.+...
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~ 57 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSS 57 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444444566778999999999999999999999999999876554
Done!