Query 030000
Match_columns 184
No_of_seqs 159 out of 1894
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 06:57:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 100.0 7.9E-38 1.7E-42 207.4 21.1 172 11-183 9-180 (181)
2 KOG0084 GTPase Rab1/YPT1, smal 100.0 8.1E-39 1.8E-43 204.4 12.5 157 18-183 8-174 (205)
3 PTZ00133 ADP-ribosylation fact 100.0 1.5E-36 3.1E-41 201.6 20.8 171 11-182 9-179 (182)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.8E-37 3.9E-42 197.7 14.5 163 18-183 21-187 (221)
5 smart00177 ARF ARF-like small 100.0 1.2E-36 2.7E-41 200.9 19.2 166 15-181 9-174 (175)
6 KOG0092 GTPase Rab5/YPT51 and 100.0 2.5E-37 5.3E-42 196.9 14.8 161 17-183 3-169 (200)
7 KOG0075 GTP-binding ADP-ribosy 100.0 5.1E-37 1.1E-41 186.9 14.6 183 1-183 2-184 (186)
8 cd04149 Arf6 Arf6 subfamily. 100.0 3.1E-36 6.7E-41 197.8 18.6 161 17-178 7-167 (168)
9 cd04150 Arf1_5_like Arf1-Arf5- 100.0 6.2E-36 1.3E-40 194.8 18.6 158 20-178 1-158 (159)
10 PF00025 Arf: ADP-ribosylation 100.0 1.2E-34 2.6E-39 191.1 17.9 170 10-180 4-175 (175)
11 cd04158 ARD1 ARD1 subfamily. 100.0 2.4E-34 5.3E-39 189.2 19.2 161 21-182 1-162 (169)
12 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 4.5E-34 9.7E-39 188.7 19.6 161 17-178 13-173 (174)
13 KOG0098 GTPase Rab2, small G p 100.0 1.3E-35 2.8E-40 187.8 11.0 154 18-180 5-167 (216)
14 cd04154 Arl2 Arl2 subfamily. 100.0 3.8E-34 8.3E-39 189.0 18.6 161 17-178 12-172 (173)
15 KOG0070 GTP-binding ADP-ribosy 100.0 1.3E-34 2.9E-39 183.9 14.7 171 13-184 11-181 (181)
16 cd04120 Rab12 Rab12 subfamily. 100.0 1.8E-34 3.9E-39 193.5 16.1 158 21-182 2-164 (202)
17 KOG0078 GTP-binding protein SE 100.0 4.2E-35 9.2E-40 189.9 12.3 157 17-182 10-175 (207)
18 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 8.2E-35 1.8E-39 191.7 13.9 159 19-182 2-165 (172)
19 cd04157 Arl6 Arl6 subfamily. 100.0 8.7E-34 1.9E-38 185.4 18.4 158 21-178 1-161 (162)
20 cd04121 Rab40 Rab40 subfamily. 100.0 6.2E-34 1.3E-38 189.3 17.8 158 18-182 5-168 (189)
21 KOG0394 Ras-related GTPase [Ge 100.0 1.3E-35 2.7E-40 187.5 9.1 167 16-182 6-179 (210)
22 cd01875 RhoG RhoG subfamily. 100.0 4.3E-34 9.4E-39 191.2 16.9 163 18-182 2-178 (191)
23 KOG0080 GTPase Rab18, small G 100.0 2.9E-35 6.3E-40 181.9 10.1 162 18-182 10-175 (209)
24 cd04133 Rop_like Rop subfamily 100.0 4.8E-34 1E-38 187.9 16.0 156 20-182 2-174 (176)
25 KOG0073 GTP-binding ADP-ribosy 100.0 2.8E-33 6.1E-38 173.6 18.3 178 1-182 1-179 (185)
26 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.5E-33 5.3E-38 184.0 18.8 157 21-178 1-166 (167)
27 smart00178 SAR Sar1p-like memb 100.0 6.6E-33 1.4E-37 184.5 20.2 162 17-179 15-183 (184)
28 cd04151 Arl1 Arl1 subfamily. 100.0 2.9E-33 6.2E-38 182.3 18.1 157 21-178 1-157 (158)
29 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.5E-33 3.3E-38 186.6 16.7 158 17-181 3-180 (182)
30 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 6.3E-33 1.4E-37 184.5 18.8 164 18-182 2-171 (183)
31 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.2E-33 9.2E-38 188.0 17.9 160 20-183 1-170 (201)
32 PTZ00369 Ras-like protein; Pro 100.0 1.8E-33 3.9E-38 188.1 15.9 161 17-182 3-168 (189)
33 cd04175 Rap1 Rap1 subgroup. T 100.0 2.8E-33 6.1E-38 183.4 16.5 158 19-181 1-163 (164)
34 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 4.8E-33 1E-37 182.0 17.5 155 22-178 2-163 (164)
35 cd00879 Sar1 Sar1 subfamily. 100.0 3.1E-32 6.6E-37 182.5 21.5 163 17-180 17-190 (190)
36 cd04136 Rap_like Rap-like subf 100.0 2.4E-33 5.2E-38 183.5 15.6 158 19-180 1-162 (163)
37 KOG0095 GTPase Rab30, small G 100.0 4.2E-34 9.1E-39 174.9 11.1 159 19-181 7-169 (213)
38 cd04126 Rab20 Rab20 subfamily. 100.0 7.2E-33 1.6E-37 187.7 18.3 160 20-181 1-190 (220)
39 cd00877 Ran Ran (Ras-related n 100.0 5E-33 1.1E-37 182.3 17.0 156 20-182 1-160 (166)
40 cd04131 Rnd Rnd subfamily. Th 100.0 4E-33 8.8E-38 184.2 16.4 156 19-181 1-176 (178)
41 cd04122 Rab14 Rab14 subfamily. 100.0 1.7E-33 3.7E-38 184.8 14.1 158 19-182 2-165 (166)
42 cd04138 H_N_K_Ras_like H-Ras/N 100.0 5.4E-33 1.2E-37 181.6 16.1 157 19-180 1-161 (162)
43 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.8E-32 4E-37 178.5 18.4 157 21-178 1-157 (158)
44 cd04127 Rab27A Rab27a subfamil 100.0 1.9E-32 4.2E-37 182.0 18.7 160 18-182 3-178 (180)
45 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.2E-32 2.6E-37 181.9 17.3 158 20-179 2-173 (175)
46 PLN03071 GTP-binding nuclear p 100.0 8.6E-33 1.9E-37 188.3 17.1 159 17-182 11-173 (219)
47 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.1E-32 2.4E-37 187.8 17.5 158 18-182 12-189 (232)
48 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 5E-33 1.1E-37 182.9 14.8 158 21-182 2-166 (170)
49 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.9E-32 6.2E-37 179.1 17.8 158 21-178 1-166 (167)
50 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.3E-32 2.7E-37 182.6 16.0 160 20-182 1-167 (182)
51 cd01865 Rab3 Rab3 subfamily. 100.0 2.8E-32 6E-37 178.8 17.4 157 20-182 2-164 (165)
52 cd04119 RJL RJL (RabJ-Like) su 100.0 2.6E-32 5.6E-37 179.4 17.1 157 20-181 1-167 (168)
53 smart00173 RAS Ras subfamily o 100.0 1.5E-32 3.3E-37 179.9 15.8 158 20-182 1-163 (164)
54 cd04156 ARLTS1 ARLTS1 subfamil 100.0 4.5E-32 9.7E-37 177.0 17.9 157 21-178 1-159 (160)
55 KOG0093 GTPase Rab3, small G p 100.0 6.5E-33 1.4E-37 169.1 12.8 156 19-183 21-185 (193)
56 cd04117 Rab15 Rab15 subfamily. 100.0 1.7E-32 3.7E-37 179.0 15.9 155 20-179 1-160 (161)
57 cd04145 M_R_Ras_like M-Ras/R-R 100.0 5.6E-33 1.2E-37 181.9 13.7 158 19-181 2-164 (164)
58 cd04176 Rap2 Rap2 subgroup. T 100.0 1.4E-32 3E-37 180.0 15.2 158 19-180 1-162 (163)
59 cd01871 Rac1_like Rac1-like su 100.0 2.7E-32 5.9E-37 180.0 16.5 159 19-179 1-173 (174)
60 cd04155 Arl3 Arl3 subfamily. 100.0 1.3E-31 2.7E-36 177.0 19.7 161 17-178 12-172 (173)
61 cd04159 Arl10_like Arl10-like 100.0 1E-31 2.2E-36 174.9 18.8 157 22-178 2-158 (159)
62 KOG0087 GTPase Rab11/YPT3, sma 100.0 3.3E-33 7.1E-38 180.5 11.4 155 18-181 13-176 (222)
63 cd01867 Rab8_Rab10_Rab13_like 100.0 5.7E-32 1.2E-36 177.7 17.4 158 19-182 3-166 (167)
64 cd04144 Ras2 Ras2 subfamily. 100.0 1.7E-32 3.7E-37 183.5 15.2 158 21-183 1-165 (190)
65 cd04124 RabL2 RabL2 subfamily. 100.0 7.3E-32 1.6E-36 176.1 16.8 157 20-184 1-161 (161)
66 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 8.7E-32 1.9E-36 176.7 17.3 158 19-182 2-165 (166)
67 cd04111 Rab39 Rab39 subfamily. 100.0 4.3E-32 9.3E-37 184.0 16.2 160 19-182 2-167 (211)
68 cd04134 Rho3 Rho3 subfamily. 100.0 3.8E-32 8.2E-37 181.7 15.5 161 20-182 1-175 (189)
69 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 6E-32 1.3E-36 183.3 16.6 162 20-182 2-177 (222)
70 cd04103 Centaurin_gamma Centau 100.0 3E-32 6.5E-37 177.0 14.2 152 20-179 1-157 (158)
71 cd04116 Rab9 Rab9 subfamily. 100.0 1E-31 2.2E-36 177.0 16.9 160 17-180 3-170 (170)
72 cd04109 Rab28 Rab28 subfamily. 100.0 1.6E-31 3.4E-36 182.0 18.3 158 20-182 1-167 (215)
73 cd01864 Rab19 Rab19 subfamily. 100.0 2E-31 4.4E-36 174.8 18.0 157 19-180 3-165 (165)
74 KOG0086 GTPase Rab4, small G p 100.0 2.5E-32 5.4E-37 167.8 12.4 158 20-181 10-171 (214)
75 KOG0079 GTP-binding protein H- 100.0 1E-32 2.3E-37 168.4 10.6 154 19-182 8-170 (198)
76 cd04110 Rab35 Rab35 subfamily. 100.0 1.1E-31 2.3E-36 180.8 16.5 158 18-182 5-168 (199)
77 cd04140 ARHI_like ARHI subfami 100.0 2.7E-32 5.9E-37 178.9 13.1 156 20-179 2-163 (165)
78 KOG0071 GTP-binding ADP-ribosy 100.0 3.1E-31 6.7E-36 160.5 16.5 173 9-182 7-179 (180)
79 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.6E-31 3.5E-36 176.0 15.9 159 19-181 2-169 (170)
80 cd04132 Rho4_like Rho4-like su 100.0 2.1E-31 4.6E-36 178.0 16.4 157 20-182 1-168 (187)
81 KOG0091 GTPase Rab39, small G 100.0 5.6E-32 1.2E-36 167.8 12.3 156 18-181 7-173 (213)
82 cd04113 Rab4 Rab4 subfamily. 100.0 1.6E-31 3.4E-36 174.6 15.2 155 20-180 1-161 (161)
83 cd04106 Rab23_lke Rab23-like s 100.0 4.1E-31 9E-36 172.8 17.1 153 20-179 1-161 (162)
84 cd04112 Rab26 Rab26 subfamily. 100.0 3.6E-31 7.9E-36 177.3 16.9 158 20-183 1-165 (191)
85 smart00176 RAN Ran (Ras-relate 100.0 3.3E-31 7.1E-36 177.5 16.3 151 25-182 1-155 (200)
86 cd04125 RabA_like RabA-like su 100.0 5.3E-31 1.1E-35 176.2 16.9 159 20-183 1-164 (188)
87 cd04143 Rhes_like Rhes_like su 100.0 6.9E-31 1.5E-35 181.3 17.9 157 20-180 1-170 (247)
88 cd01868 Rab11_like Rab11-like. 100.0 9.6E-31 2.1E-35 171.6 17.2 156 19-180 3-164 (165)
89 cd01892 Miro2 Miro2 subfamily. 100.0 7.3E-31 1.6E-35 172.5 16.4 156 17-182 2-167 (169)
90 cd01861 Rab6 Rab6 subfamily. 100.0 5E-31 1.1E-35 172.2 15.5 155 20-180 1-161 (161)
91 PLN03110 Rab GTPase; Provision 100.0 2.4E-31 5.2E-36 181.0 14.5 160 18-182 11-175 (216)
92 cd01860 Rab5_related Rab5-rela 100.0 1.2E-30 2.6E-35 170.7 17.3 156 19-180 1-162 (163)
93 cd04177 RSR1 RSR1 subgroup. R 100.0 4.4E-31 9.5E-36 173.6 15.2 158 19-180 1-163 (168)
94 cd01866 Rab2 Rab2 subfamily. 100.0 1.6E-30 3.4E-35 171.0 17.8 158 19-182 4-167 (168)
95 cd01863 Rab18 Rab18 subfamily. 100.0 1.5E-30 3.2E-35 170.0 17.0 156 20-180 1-161 (161)
96 cd01862 Rab7 Rab7 subfamily. 100.0 2.1E-30 4.5E-35 171.0 17.6 159 20-182 1-168 (172)
97 smart00175 RAB Rab subfamily o 100.0 2.2E-30 4.8E-35 169.6 17.3 158 20-183 1-164 (164)
98 PF00071 Ras: Ras family; Int 100.0 7.3E-31 1.6E-35 171.6 14.9 155 21-181 1-161 (162)
99 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.7E-30 3.7E-35 170.2 16.5 155 20-180 1-163 (164)
100 cd04142 RRP22 RRP22 subfamily. 100.0 5.7E-31 1.2E-35 176.6 14.3 160 20-183 1-176 (198)
101 cd04139 RalA_RalB RalA/RalB su 100.0 2.3E-30 5.1E-35 169.5 16.6 158 20-182 1-163 (164)
102 cd04135 Tc10 TC10 subfamily. 100.0 2E-30 4.3E-35 171.5 15.9 160 20-180 1-173 (174)
103 cd04118 Rab24 Rab24 subfamily. 100.0 8.6E-31 1.9E-35 175.9 14.2 156 20-182 1-167 (193)
104 smart00174 RHO Rho (Ras homolo 100.0 1.5E-30 3.2E-35 172.1 15.0 159 22-182 1-173 (174)
105 cd01893 Miro1 Miro1 subfamily. 100.0 2.8E-30 6.1E-35 169.4 15.1 160 20-182 1-165 (166)
106 PLN03108 Rab family protein; P 100.0 1.3E-29 2.9E-34 171.8 17.7 159 18-182 5-169 (210)
107 cd01870 RhoA_like RhoA-like su 100.0 7.1E-30 1.5E-34 169.0 15.3 159 20-180 2-174 (175)
108 cd04123 Rab21 Rab21 subfamily. 100.0 1.9E-29 4.2E-34 164.8 17.0 155 20-180 1-161 (162)
109 cd04147 Ras_dva Ras-dva subfam 100.0 9.6E-30 2.1E-34 171.3 15.8 157 21-181 1-163 (198)
110 PLN03118 Rab family protein; P 100.0 4.9E-30 1.1E-34 174.3 14.5 160 17-182 12-178 (211)
111 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.4E-30 3E-35 172.0 11.4 154 20-178 1-171 (173)
112 cd04146 RERG_RasL11_like RERG/ 100.0 4.7E-30 1E-34 168.3 13.8 156 21-181 1-164 (165)
113 cd01873 RhoBTB RhoBTB subfamil 100.0 2.6E-30 5.7E-35 172.8 12.0 157 19-179 2-194 (195)
114 cd00154 Rab Rab family. Rab G 100.0 4.5E-29 9.8E-34 162.3 16.8 153 20-178 1-159 (159)
115 cd04137 RheB Rheb (Ras Homolog 100.0 4.5E-29 9.7E-34 165.8 16.2 159 20-183 2-165 (180)
116 cd04148 RGK RGK subfamily. Th 100.0 1.1E-29 2.4E-34 173.3 13.5 155 20-181 1-163 (221)
117 cd04114 Rab30 Rab30 subfamily. 100.0 8.3E-29 1.8E-33 163.0 17.3 158 18-180 6-168 (169)
118 cd00876 Ras Ras family. The R 100.0 3.9E-29 8.4E-34 163.0 14.6 155 21-180 1-160 (160)
119 cd00157 Rho Rho (Ras homology) 100.0 2.2E-29 4.7E-34 166.0 13.6 157 20-178 1-170 (171)
120 PTZ00132 GTP-binding nuclear p 100.0 5.5E-28 1.2E-32 164.7 17.4 159 17-182 7-169 (215)
121 cd04129 Rho2 Rho2 subfamily. 100.0 2.4E-28 5.3E-33 163.1 15.3 157 20-182 2-174 (187)
122 KOG0074 GTP-binding ADP-ribosy 100.0 1.2E-28 2.6E-33 149.5 12.0 176 4-181 3-179 (185)
123 KOG0076 GTP-binding ADP-ribosy 100.0 3.4E-29 7.4E-34 157.0 9.5 169 15-183 13-189 (197)
124 KOG0072 GTP-binding ADP-ribosy 100.0 7.8E-29 1.7E-33 150.8 9.7 174 10-184 8-182 (182)
125 KOG0088 GTPase Rab21, small G 100.0 8.5E-30 1.8E-34 157.5 5.6 159 18-182 12-176 (218)
126 KOG0081 GTPase Rab27, small G 100.0 4.9E-30 1.1E-34 158.6 2.9 153 20-180 10-180 (219)
127 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.2E-27 4.7E-32 159.0 15.8 117 20-136 1-144 (202)
128 cd01897 NOG NOG1 is a nucleola 100.0 7.7E-27 1.7E-31 153.5 17.9 154 20-180 1-167 (168)
129 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.3E-29 2.9E-34 152.4 4.3 151 24-183 2-162 (192)
130 cd01898 Obg Obg subfamily. Th 100.0 4.1E-27 8.8E-32 155.0 16.3 157 21-180 2-170 (170)
131 KOG0395 Ras-related GTPase [Ge 100.0 7.8E-28 1.7E-32 160.1 11.4 160 18-182 2-166 (196)
132 cd01890 LepA LepA subfamily. 100.0 1.2E-26 2.6E-31 154.0 15.5 152 21-182 2-178 (179)
133 cd04171 SelB SelB subfamily. 100.0 1.8E-26 4E-31 151.0 15.8 153 20-178 1-163 (164)
134 cd01878 HflX HflX subfamily. 100.0 3.1E-26 6.6E-31 155.1 17.2 154 17-180 39-204 (204)
135 KOG0097 GTPase Rab14, small G 99.9 2.8E-26 6E-31 139.6 12.9 155 19-179 11-171 (215)
136 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 9.7E-26 2.1E-30 148.2 16.4 156 21-182 2-167 (168)
137 PRK12299 obgE GTPase CgtA; Rev 99.9 8.9E-26 1.9E-30 161.5 17.3 161 19-183 158-330 (335)
138 PRK03003 GTP-binding protein D 99.9 1.8E-25 4E-30 167.7 19.5 160 18-182 210-383 (472)
139 TIGR00231 small_GTP small GTP- 99.9 2.8E-25 6.1E-30 144.4 17.3 154 19-177 1-160 (161)
140 PRK04213 GTP-binding protein; 99.9 1.5E-26 3.3E-31 156.2 11.3 161 17-183 7-194 (201)
141 PRK15494 era GTPase Era; Provi 99.9 2.1E-25 4.5E-30 160.6 17.7 157 17-182 50-217 (339)
142 cd01889 SelB_euk SelB subfamil 99.9 2.5E-25 5.4E-30 149.2 15.9 157 20-181 1-186 (192)
143 TIGR00436 era GTP-binding prot 99.9 4E-25 8.7E-30 155.2 17.3 153 21-182 2-165 (270)
144 cd00881 GTP_translation_factor 99.9 5.2E-25 1.1E-29 147.3 17.1 157 21-182 1-188 (189)
145 cd04164 trmE TrmE (MnmE, ThdF, 99.9 8.4E-25 1.8E-29 142.1 17.3 144 20-180 2-156 (157)
146 TIGR03156 GTP_HflX GTP-binding 99.9 8.5E-25 1.8E-29 157.7 18.3 152 18-180 188-351 (351)
147 cd01891 TypA_BipA TypA (tyrosi 99.9 6.6E-25 1.4E-29 147.3 16.5 157 20-181 3-192 (194)
148 TIGR03594 GTPase_EngA ribosome 99.9 7E-25 1.5E-29 163.6 18.2 160 18-182 171-345 (429)
149 PF00009 GTP_EFTU: Elongation 99.9 7.7E-25 1.7E-29 146.3 16.3 159 18-182 2-188 (188)
150 PRK05291 trmE tRNA modificatio 99.9 1.3E-24 2.8E-29 161.7 18.6 147 17-181 213-370 (449)
151 TIGR02729 Obg_CgtA Obg family 99.9 8.9E-25 1.9E-29 156.3 16.7 158 19-180 157-328 (329)
152 KOG0393 Ras-related small GTPa 99.9 4.1E-26 8.8E-31 148.8 8.8 164 18-182 3-180 (198)
153 TIGR02528 EutP ethanolamine ut 99.9 3E-25 6.4E-30 142.0 12.7 134 21-177 2-141 (142)
154 PLN00023 GTP-binding protein; 99.9 3.4E-25 7.3E-30 155.4 13.7 121 16-136 18-166 (334)
155 cd01881 Obg_like The Obg-like 99.9 3.4E-25 7.4E-30 146.6 12.7 153 24-179 1-175 (176)
156 cd01888 eIF2_gamma eIF2-gamma 99.9 6.4E-25 1.4E-29 148.1 13.9 160 20-182 1-200 (203)
157 cd01894 EngA1 EngA1 subfamily. 99.9 2E-24 4.2E-29 140.4 15.6 146 23-180 1-157 (157)
158 COG1100 GTPase SAR1 and relate 99.9 1.9E-24 4.2E-29 147.8 16.0 164 18-182 4-186 (219)
159 cd00882 Ras_like_GTPase Ras-li 99.9 5.2E-25 1.1E-29 142.1 12.5 152 24-178 1-157 (157)
160 TIGR00450 mnmE_trmE_thdF tRNA 99.9 8.1E-24 1.8E-28 156.6 20.3 151 16-182 200-361 (442)
161 PF02421 FeoB_N: Ferrous iron 99.9 4.2E-25 9E-30 140.7 11.6 142 20-176 1-156 (156)
162 PRK03003 GTP-binding protein D 99.9 3.3E-24 7.1E-29 160.9 18.0 153 18-182 37-200 (472)
163 KOG4252 GTP-binding protein [S 99.9 1.2E-26 2.7E-31 146.4 4.1 157 17-183 18-183 (246)
164 cd01879 FeoB Ferrous iron tran 99.9 1.7E-24 3.6E-29 140.9 14.2 147 24-181 1-157 (158)
165 cd04105 SR_beta Signal recogni 99.9 3.7E-24 8.1E-29 144.2 15.7 157 21-178 2-202 (203)
166 cd01895 EngA2 EngA2 subfamily. 99.9 1.8E-23 3.8E-28 138.0 17.8 156 19-179 2-173 (174)
167 PTZ00099 rab6; Provisional 99.9 6.2E-24 1.3E-28 140.0 14.1 136 42-183 3-144 (176)
168 PRK12296 obgE GTPase CgtA; Rev 99.9 1.1E-23 2.3E-28 156.3 16.9 161 18-183 158-342 (500)
169 PRK00454 engB GTP-binding prot 99.9 9.7E-24 2.1E-28 142.0 15.3 162 15-182 20-195 (196)
170 PRK12297 obgE GTPase CgtA; Rev 99.9 2.7E-23 5.9E-28 152.3 18.5 156 20-183 159-329 (424)
171 PRK15467 ethanolamine utilizat 99.9 4.7E-24 1E-28 138.4 12.8 142 21-182 3-148 (158)
172 PRK09518 bifunctional cytidyla 99.9 2.6E-23 5.6E-28 162.7 18.9 160 18-182 449-622 (712)
173 TIGR01393 lepA GTP-binding pro 99.9 4.4E-23 9.6E-28 157.6 18.8 154 19-182 3-181 (595)
174 PRK11058 GTPase HflX; Provisio 99.9 8.3E-23 1.8E-27 150.5 19.0 154 20-182 198-363 (426)
175 PRK00093 GTP-binding protein D 99.9 4.5E-23 9.9E-28 154.1 17.6 159 18-181 172-344 (435)
176 TIGR00487 IF-2 translation ini 99.9 5.4E-23 1.2E-27 156.5 17.8 156 17-178 85-247 (587)
177 cd04163 Era Era subfamily. Er 99.9 7.7E-23 1.7E-27 134.0 16.2 154 19-180 3-168 (168)
178 PRK00089 era GTPase Era; Revie 99.9 6.2E-23 1.3E-27 145.9 16.9 157 18-182 4-172 (292)
179 TIGR03598 GTPase_YsxC ribosome 99.9 2.2E-23 4.7E-28 138.3 12.7 148 12-170 11-179 (179)
180 PRK05306 infB translation init 99.9 8.3E-23 1.8E-27 159.0 17.3 156 17-178 288-449 (787)
181 cd00880 Era_like Era (E. coli 99.9 5.9E-23 1.3E-27 133.6 13.7 152 24-180 1-163 (163)
182 TIGR03594 GTPase_EngA ribosome 99.9 1.2E-22 2.7E-27 151.5 17.1 150 21-182 1-161 (429)
183 PRK00093 GTP-binding protein D 99.9 1.5E-22 3.2E-27 151.3 17.3 148 20-179 2-160 (435)
184 CHL00189 infB translation init 99.9 1.7E-22 3.7E-27 156.1 18.0 159 16-180 241-409 (742)
185 COG1159 Era GTPase [General fu 99.9 1.9E-22 4.1E-27 138.2 15.7 157 18-182 5-173 (298)
186 COG2229 Predicted GTPase [Gene 99.9 3.8E-22 8.3E-27 127.1 16.0 155 18-179 9-176 (187)
187 PRK12298 obgE GTPase CgtA; Rev 99.9 2.6E-22 5.6E-27 146.4 16.8 161 20-182 160-334 (390)
188 TIGR00475 selB selenocysteine- 99.9 2E-22 4.4E-27 153.9 16.6 158 20-182 1-167 (581)
189 cd01884 EF_Tu EF-Tu subfamily. 99.9 2.2E-22 4.9E-27 134.3 14.6 146 19-169 2-171 (195)
190 PRK12317 elongation factor 1-a 99.9 1.3E-22 2.7E-27 150.9 14.6 155 16-172 3-196 (425)
191 PRK05433 GTP-binding protein L 99.9 3.5E-22 7.6E-27 152.9 17.1 155 18-182 6-185 (600)
192 PF08477 Miro: Miro-like prote 99.9 1.4E-23 3E-28 130.4 7.4 110 21-132 1-119 (119)
193 TIGR00483 EF-1_alpha translati 99.9 1E-22 2.2E-27 151.4 12.8 154 16-171 4-197 (426)
194 COG1160 Predicted GTPases [Gen 99.9 6E-22 1.3E-26 142.8 16.1 175 3-182 156-352 (444)
195 PRK09518 bifunctional cytidyla 99.9 7.4E-22 1.6E-26 154.6 17.6 153 18-182 274-437 (712)
196 PRK10218 GTP-binding protein; 99.9 8.3E-22 1.8E-26 150.3 17.1 161 17-182 3-196 (607)
197 TIGR01394 TypA_BipA GTP-bindin 99.9 7.4E-22 1.6E-26 150.7 16.8 157 21-182 3-192 (594)
198 cd04166 CysN_ATPS CysN_ATPS su 99.9 2.7E-22 5.8E-27 135.9 12.9 147 21-171 1-184 (208)
199 COG0218 Predicted GTPase [Gene 99.9 1.9E-21 4E-26 126.6 15.1 164 10-183 15-199 (200)
200 cd04168 TetM_like Tet(M)-like 99.9 2.4E-21 5.1E-26 133.2 16.2 157 21-182 1-236 (237)
201 cd01883 EF1_alpha Eukaryotic e 99.9 4.1E-22 8.8E-27 136.0 12.3 147 21-170 1-194 (219)
202 TIGR03680 eif2g_arch translati 99.9 6.8E-22 1.5E-26 145.8 14.3 162 17-181 2-196 (406)
203 COG1160 Predicted GTPases [Gen 99.9 1.3E-21 2.8E-26 141.1 14.9 149 20-180 4-164 (444)
204 TIGR00491 aIF-2 translation in 99.9 1.8E-21 3.8E-26 148.1 16.4 157 19-180 4-215 (590)
205 KOG1673 Ras GTPases [General f 99.9 5.9E-23 1.3E-27 126.8 6.8 161 18-180 19-185 (205)
206 PF10662 PduV-EutP: Ethanolami 99.9 8.5E-22 1.8E-26 122.8 11.9 135 21-177 3-142 (143)
207 PRK04000 translation initiatio 99.9 1.4E-21 3.1E-26 144.1 14.3 164 16-182 6-202 (411)
208 cd01896 DRG The developmentall 99.9 5.5E-21 1.2E-25 131.2 15.9 151 21-181 2-226 (233)
209 cd04165 GTPBP1_like GTPBP1-lik 99.9 5.4E-21 1.2E-25 130.3 14.7 153 21-178 1-220 (224)
210 COG0486 ThdF Predicted GTPase 99.9 2.4E-20 5.3E-25 134.9 18.2 154 15-182 213-377 (454)
211 PRK09554 feoB ferrous iron tra 99.9 6.9E-21 1.5E-25 149.0 16.6 152 18-180 2-167 (772)
212 TIGR00437 feoB ferrous iron tr 99.9 3.9E-21 8.5E-26 147.1 14.1 140 26-180 1-154 (591)
213 PRK12736 elongation factor Tu; 99.9 2.4E-20 5.2E-25 137.2 16.9 161 16-181 9-201 (394)
214 PRK10512 selenocysteinyl-tRNA- 99.9 1.6E-20 3.5E-25 144.0 16.3 156 21-181 2-166 (614)
215 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 1.4E-21 3.1E-26 124.6 8.5 157 18-181 9-169 (216)
216 cd04169 RF3 RF3 subfamily. Pe 99.9 5.9E-20 1.3E-24 128.3 17.1 112 20-136 3-138 (267)
217 cd01876 YihA_EngB The YihA (En 99.9 2.7E-20 5.9E-25 122.2 14.1 154 21-180 1-170 (170)
218 PRK12735 elongation factor Tu; 99.9 3.7E-20 8E-25 136.3 15.5 160 17-181 10-203 (396)
219 PRK04004 translation initiatio 99.9 4.1E-20 8.9E-25 141.2 16.1 154 18-179 5-216 (586)
220 KOG0077 Vesicle coat complex C 99.9 1.5E-20 3.2E-25 117.6 11.0 165 15-180 16-192 (193)
221 TIGR00485 EF-Tu translation el 99.9 5E-20 1.1E-24 135.7 15.4 159 16-179 9-199 (394)
222 cd04167 Snu114p Snu114p subfam 99.9 2E-20 4.4E-25 127.2 12.3 156 21-181 2-211 (213)
223 cd01885 EF2 EF2 (for archaea a 99.8 1E-19 2.2E-24 123.5 14.2 109 21-134 2-138 (222)
224 CHL00071 tufA elongation facto 99.8 7.3E-20 1.6E-24 135.3 14.5 148 16-168 9-180 (409)
225 PRK05124 cysN sulfate adenylyl 99.8 5.7E-20 1.2E-24 137.6 13.3 162 7-172 15-216 (474)
226 cd04104 p47_IIGP_like p47 (47- 99.8 5.4E-20 1.2E-24 123.7 11.9 158 19-183 1-186 (197)
227 PRK00741 prfC peptide chain re 99.8 3.9E-19 8.4E-24 134.3 17.3 115 17-136 8-146 (526)
228 KOG0090 Signal recognition par 99.8 3.3E-19 7.1E-24 116.2 14.3 164 15-180 34-238 (238)
229 PLN00043 elongation factor 1-a 99.8 1.3E-19 2.7E-24 134.8 14.0 151 16-171 4-203 (447)
230 PLN03126 Elongation factor Tu; 99.8 5.3E-19 1.1E-23 132.1 16.6 148 16-168 78-249 (478)
231 COG1084 Predicted GTPase [Gene 99.8 9.5E-19 2.1E-23 121.3 16.5 171 3-180 150-335 (346)
232 PTZ00141 elongation factor 1- 99.8 1.5E-19 3.4E-24 134.4 13.6 152 16-171 4-203 (446)
233 COG0370 FeoB Fe2+ transport sy 99.8 4.7E-19 1E-23 133.4 15.9 149 19-182 3-165 (653)
234 PRK00049 elongation factor Tu; 99.8 3.8E-19 8.2E-24 130.9 15.2 159 17-180 10-202 (396)
235 KOG0462 Elongation factor-type 99.8 1.9E-19 4.1E-24 131.8 12.9 162 15-183 56-237 (650)
236 PRK13351 elongation factor G; 99.8 6.2E-19 1.4E-23 138.1 16.6 115 17-136 6-140 (687)
237 PRK05506 bifunctional sulfate 99.8 3.1E-19 6.7E-24 138.5 14.6 162 6-171 11-211 (632)
238 PLN03127 Elongation factor Tu; 99.8 8.9E-19 1.9E-23 130.2 16.1 162 15-181 57-252 (447)
239 cd01886 EF-G Elongation factor 99.8 8.6E-19 1.9E-23 122.6 15.1 110 21-135 1-130 (270)
240 TIGR02034 CysN sulfate adenyly 99.8 3.3E-19 7.1E-24 131.6 13.4 148 20-171 1-187 (406)
241 cd04170 EF-G_bact Elongation f 99.8 2.5E-18 5.3E-23 120.9 17.0 110 21-135 1-130 (268)
242 KOG1489 Predicted GTP-binding 99.8 6.2E-19 1.3E-23 121.5 13.1 155 18-179 195-365 (366)
243 TIGR00484 EF-G translation elo 99.8 2.1E-18 4.5E-23 135.0 17.9 115 16-135 7-141 (689)
244 KOG3883 Ras family small GTPas 99.8 1.4E-18 2.9E-23 107.4 12.7 164 14-181 4-175 (198)
245 COG0532 InfB Translation initi 99.8 8.7E-19 1.9E-23 128.6 13.8 157 18-180 4-169 (509)
246 TIGR00503 prfC peptide chain r 99.8 2.6E-18 5.6E-23 129.9 16.8 114 17-135 9-146 (527)
247 PF09439 SRPRB: Signal recogni 99.8 5.7E-20 1.2E-24 119.7 6.4 125 18-144 2-135 (181)
248 KOG1423 Ras-like GTPase ERA [C 99.8 1.6E-18 3.5E-23 118.9 13.6 162 17-182 70-272 (379)
249 PTZ00327 eukaryotic translatio 99.8 1.1E-18 2.4E-23 129.6 13.5 163 17-182 32-234 (460)
250 COG5256 TEF1 Translation elong 99.8 2.4E-19 5.2E-24 127.7 9.2 154 16-171 4-201 (428)
251 COG2262 HflX GTPases [General 99.8 7.1E-18 1.5E-22 120.3 16.6 156 17-182 190-357 (411)
252 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 1.2E-18 2.5E-23 118.3 12.2 160 21-181 1-176 (232)
253 KOG1145 Mitochondrial translat 99.8 3.8E-18 8.3E-23 125.2 13.5 160 14-180 148-315 (683)
254 cd00066 G-alpha G protein alph 99.8 3.2E-18 7E-23 122.5 12.7 135 49-183 146-313 (317)
255 smart00275 G_alpha G protein a 99.8 7.3E-18 1.6E-22 121.5 13.7 134 49-182 169-335 (342)
256 COG0481 LepA Membrane GTPase L 99.8 2.8E-18 6.2E-23 124.0 11.3 157 17-183 7-188 (603)
257 PRK12739 elongation factor G; 99.8 2.4E-17 5.3E-22 129.0 16.2 114 17-135 6-139 (691)
258 KOG1707 Predicted Ras related/ 99.8 1E-18 2.2E-23 128.9 7.7 159 16-180 6-174 (625)
259 PF01926 MMR_HSR1: 50S ribosom 99.8 1.4E-17 3.1E-22 102.8 11.3 104 21-130 1-116 (116)
260 PRK00007 elongation factor G; 99.8 3.5E-17 7.5E-22 128.1 15.8 115 16-135 7-141 (693)
261 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 6.3E-17 1.4E-21 108.8 14.6 162 20-183 1-186 (196)
262 KOG1191 Mitochondrial GTPase [ 99.8 9.3E-17 2E-21 116.7 16.0 165 17-182 266-451 (531)
263 COG1217 TypA Predicted membran 99.7 4.2E-17 9E-22 117.8 12.3 161 18-183 4-197 (603)
264 PRK12740 elongation factor G; 99.7 1.2E-16 2.7E-21 125.1 16.0 106 25-135 1-126 (668)
265 PRK09866 hypothetical protein; 99.7 3.4E-16 7.3E-21 118.2 17.1 112 64-178 230-350 (741)
266 COG1163 DRG Predicted GTPase [ 99.7 1E-16 2.2E-21 111.1 13.3 153 19-181 63-289 (365)
267 COG3596 Predicted GTPase [Gene 99.7 3.3E-17 7.1E-22 111.3 10.0 166 14-182 34-223 (296)
268 KOG4423 GTP-binding protein-li 99.7 7.9E-20 1.7E-24 116.4 -2.6 160 19-182 25-195 (229)
269 cd01899 Ygr210 Ygr210 subfamil 99.7 4.7E-16 1E-20 110.8 16.1 155 22-182 1-270 (318)
270 COG0536 Obg Predicted GTPase [ 99.7 1.7E-16 3.6E-21 110.8 12.8 161 20-183 160-335 (369)
271 cd01850 CDC_Septin CDC/Septin. 99.7 3.8E-16 8.1E-21 109.8 12.7 115 19-138 4-160 (276)
272 COG4917 EutP Ethanolamine util 99.7 1.1E-16 2.4E-21 95.8 7.6 138 21-179 3-144 (148)
273 PRK13768 GTPase; Provisional 99.7 6.8E-17 1.5E-21 112.3 7.1 119 64-183 97-249 (253)
274 KOG1490 GTP-binding protein CR 99.7 8.6E-17 1.9E-21 117.1 7.1 178 3-182 150-342 (620)
275 KOG0082 G-protein alpha subuni 99.7 9E-16 1.9E-20 109.0 11.6 136 48-183 179-346 (354)
276 PRK09435 membrane ATPase/prote 99.7 8E-16 1.7E-20 109.8 10.9 108 62-181 147-260 (332)
277 KOG1532 GTPase XAB1, interacts 99.7 3.7E-16 8E-21 106.1 7.9 117 63-182 115-265 (366)
278 PRK09602 translation-associate 99.6 2E-14 4.4E-19 105.4 15.0 79 20-98 2-113 (396)
279 TIGR00490 aEF-2 translation el 99.6 5.7E-15 1.2E-19 116.2 12.8 113 18-135 18-152 (720)
280 COG2895 CysN GTPases - Sulfate 99.6 3.7E-15 7.9E-20 104.5 8.9 150 17-170 4-192 (431)
281 PRK14845 translation initiatio 99.6 2.6E-14 5.5E-19 114.6 14.8 145 31-180 473-672 (1049)
282 cd01882 BMS1 Bms1. Bms1 is an 99.6 1.9E-14 4.2E-19 98.5 12.2 142 17-167 37-182 (225)
283 COG5257 GCD11 Translation init 99.6 1.2E-14 2.6E-19 100.9 11.0 164 17-183 8-204 (415)
284 cd01853 Toc34_like Toc34-like 99.6 6.6E-14 1.4E-18 96.8 14.7 121 16-137 28-165 (249)
285 KOG0458 Elongation factor 1 al 99.6 3.8E-15 8.2E-20 110.3 8.7 156 15-172 173-373 (603)
286 PF04548 AIG1: AIG1 family; I 99.6 1.4E-14 3.1E-19 98.4 10.9 159 20-183 1-188 (212)
287 PF03029 ATP_bind_1: Conserved 99.6 1.1E-15 2.4E-20 105.0 5.4 116 65-181 92-237 (238)
288 PRK07560 elongation factor EF- 99.6 3.7E-14 8E-19 111.9 14.3 112 18-134 19-152 (731)
289 PF05049 IIGP: Interferon-indu 99.6 1.3E-14 2.9E-19 104.4 9.9 160 16-184 32-221 (376)
290 TIGR00101 ureG urease accessor 99.6 4.3E-14 9.3E-19 94.8 11.9 103 64-181 92-196 (199)
291 PTZ00416 elongation factor 2; 99.6 3.5E-14 7.6E-19 113.2 12.8 113 17-134 17-157 (836)
292 TIGR00991 3a0901s02IAP34 GTP-b 99.6 3.2E-13 6.9E-18 95.0 15.5 118 17-135 36-167 (313)
293 TIGR00073 hypB hydrogenase acc 99.6 2E-14 4.3E-19 97.4 9.2 152 14-180 17-206 (207)
294 PLN00116 translation elongatio 99.6 4.7E-14 1E-18 112.6 12.5 113 17-134 17-163 (843)
295 COG4108 PrfC Peptide chain rel 99.6 8.1E-14 1.8E-18 100.4 12.1 113 18-135 11-147 (528)
296 KOG0461 Selenocysteine-specifi 99.6 1.4E-13 3E-18 96.6 13.0 158 18-180 6-192 (522)
297 PF03308 ArgK: ArgK protein; 99.6 1.2E-13 2.6E-18 94.0 12.1 152 18-181 28-230 (266)
298 COG3276 SelB Selenocysteine-sp 99.6 2.1E-13 4.5E-18 98.5 13.2 156 21-181 2-162 (447)
299 PF00503 G-alpha: G-protein al 99.5 9E-14 2E-18 102.7 10.6 131 50-180 221-389 (389)
300 KOG1144 Translation initiation 99.5 1.5E-13 3.3E-18 104.5 10.8 156 19-182 475-688 (1064)
301 TIGR00750 lao LAO/AO transport 99.5 1E-12 2.2E-17 93.7 14.2 108 62-181 125-238 (300)
302 COG1703 ArgK Putative periplas 99.5 6E-13 1.3E-17 91.9 11.2 153 18-182 50-255 (323)
303 COG0480 FusA Translation elong 99.5 1.6E-13 3.5E-18 106.3 9.3 116 16-136 7-143 (697)
304 COG0378 HypB Ni2+-binding GTPa 99.5 2.6E-13 5.7E-18 88.2 8.7 145 20-180 14-200 (202)
305 KOG3905 Dynein light intermedi 99.5 4.7E-13 1E-17 93.2 10.3 160 19-180 52-289 (473)
306 PF00735 Septin: Septin; Inte 99.5 1.2E-12 2.6E-17 92.1 12.0 123 19-146 4-167 (281)
307 PRK10463 hydrogenase nickel in 99.5 3E-13 6.6E-18 94.4 9.0 57 121-180 230-288 (290)
308 COG0050 TufB GTPases - transla 99.5 1.4E-12 3.1E-17 89.7 11.5 161 16-181 9-201 (394)
309 smart00010 small_GTPase Small 99.5 1.7E-13 3.6E-18 85.4 6.2 114 20-170 1-115 (124)
310 KOG3887 Predicted small GTPase 99.4 1.2E-12 2.6E-17 87.7 9.2 162 19-182 27-203 (347)
311 PTZ00258 GTP-binding protein; 99.4 1E-11 2.3E-16 90.5 14.3 82 17-98 19-126 (390)
312 KOG0099 G protein subunit Galp 99.4 1.2E-12 2.6E-17 88.6 7.7 133 51-183 189-371 (379)
313 PF00350 Dynamin_N: Dynamin fa 99.4 5.2E-12 1.1E-16 82.9 10.6 63 65-131 102-168 (168)
314 TIGR00157 ribosome small subun 99.4 1.1E-12 2.4E-17 90.8 7.8 96 74-178 23-120 (245)
315 KOG0085 G protein subunit Galp 99.3 2.2E-12 4.8E-17 86.0 5.7 135 48-182 183-350 (359)
316 KOG3886 GTP-binding protein [S 99.3 8.2E-12 1.8E-16 83.1 7.3 119 19-139 4-134 (295)
317 TIGR00993 3a0901s04IAP86 chlor 99.3 7.9E-11 1.7E-15 90.0 13.0 119 18-136 117-251 (763)
318 COG5019 CDC3 Septin family pro 99.3 6E-11 1.3E-15 84.3 11.6 124 18-146 22-187 (373)
319 TIGR02836 spore_IV_A stage IV 99.3 5.4E-10 1.2E-14 81.2 15.3 151 18-177 16-233 (492)
320 PF05783 DLIC: Dynein light in 99.3 7.1E-11 1.5E-15 88.2 11.1 160 18-181 24-264 (472)
321 KOG2655 Septin family protein 99.3 1.1E-10 2.4E-15 83.5 11.3 123 19-146 21-183 (366)
322 smart00053 DYNc Dynamin, GTPas 99.3 2E-09 4.4E-14 74.0 16.6 70 64-137 125-208 (240)
323 KOG0468 U5 snRNP-specific prot 99.2 3.4E-11 7.4E-16 91.1 7.8 112 18-134 127-262 (971)
324 COG5258 GTPBP1 GTPase [General 99.2 4E-11 8.6E-16 85.6 7.7 155 17-176 115-334 (527)
325 KOG1547 Septin CDC10 and relat 99.2 5.6E-10 1.2E-14 75.1 11.9 138 5-147 30-210 (336)
326 KOG0460 Mitochondrial translat 99.2 2.4E-10 5.2E-15 80.4 10.4 162 15-180 50-244 (449)
327 KOG1707 Predicted Ras related/ 99.2 8.8E-10 1.9E-14 82.5 13.7 154 14-181 420-583 (625)
328 KOG0448 Mitofusin 1 GTPase, in 99.2 5E-10 1.1E-14 85.1 12.3 146 15-165 105-310 (749)
329 KOG0705 GTPase-activating prot 99.2 4.2E-11 9.1E-16 88.8 5.7 159 18-181 29-189 (749)
330 KOG0447 Dynamin-like GTP bindi 99.2 1.3E-09 2.8E-14 81.4 13.0 115 64-181 412-544 (980)
331 PRK09601 GTP-binding protein Y 99.2 3.1E-10 6.6E-15 82.1 9.5 79 20-98 3-107 (364)
332 cd01900 YchF YchF subfamily. 99.2 2.6E-10 5.7E-15 79.8 8.7 77 22-98 1-103 (274)
333 cd01855 YqeH YqeH. YqeH is an 99.2 2.8E-10 6.2E-15 76.2 8.4 99 76-181 23-125 (190)
334 cd01859 MJ1464 MJ1464. This f 99.2 3.5E-10 7.6E-15 73.4 8.5 94 78-181 3-96 (156)
335 KOG0467 Translation elongation 99.1 7.4E-10 1.6E-14 85.1 10.6 111 17-132 7-135 (887)
336 PRK12289 GTPase RsgA; Reviewed 99.1 3.8E-10 8.3E-15 81.8 7.9 91 80-179 82-173 (352)
337 KOG0410 Predicted GTP binding 99.1 9.5E-10 2.1E-14 77.0 9.3 150 17-181 176-341 (410)
338 cd01858 NGP_1 NGP-1. Autoanti 99.1 7.3E-10 1.6E-14 72.0 8.2 53 18-73 101-156 (157)
339 KOG1143 Predicted translation 99.1 6.9E-10 1.5E-14 79.2 8.3 153 19-176 167-383 (591)
340 KOG0466 Translation initiation 99.1 2.3E-10 5E-15 79.5 5.5 114 65-181 126-241 (466)
341 cd04178 Nucleostemin_like Nucl 99.1 1.1E-09 2.4E-14 71.9 7.9 53 18-73 116-171 (172)
342 KOG0463 GTP-binding protein GP 99.1 6.6E-10 1.4E-14 79.5 7.1 153 19-176 133-353 (641)
343 KOG1954 Endocytosis/signaling 99.0 9.3E-09 2E-13 73.4 11.5 118 18-139 57-229 (532)
344 KOG0465 Mitochondrial elongati 99.0 6.5E-10 1.4E-14 83.5 6.0 114 16-134 36-169 (721)
345 KOG3859 Septins (P-loop GTPase 99.0 1.7E-09 3.6E-14 74.4 7.1 124 18-146 41-201 (406)
346 KOG1486 GTP-binding protein DR 99.0 1.3E-08 2.8E-13 69.1 11.2 85 18-102 61-154 (364)
347 cd01854 YjeQ_engC YjeQ/EngC. 99.0 3E-09 6.5E-14 75.6 8.5 88 82-178 73-161 (287)
348 PRK12288 GTPase RsgA; Reviewed 99.0 3.7E-09 8.1E-14 76.7 8.9 89 85-179 118-206 (347)
349 cd01855 YqeH YqeH. YqeH is an 99.0 3E-09 6.6E-14 71.2 7.1 53 18-73 126-189 (190)
350 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 3.2E-09 6.8E-14 67.7 6.6 54 20-74 84-138 (141)
351 KOG0464 Elongation factor G [T 98.9 5E-10 1.1E-14 81.0 2.7 126 18-148 36-184 (753)
352 cd01858 NGP_1 NGP-1. Autoanti 98.9 1.1E-08 2.4E-13 66.4 8.7 90 84-180 5-94 (157)
353 PRK00098 GTPase RsgA; Reviewed 98.9 5.5E-09 1.2E-13 74.7 7.8 86 84-178 77-164 (298)
354 KOG0459 Polypeptide release fa 98.9 1.1E-09 2.4E-14 78.7 3.9 159 15-173 75-278 (501)
355 cd01856 YlqF YlqF. Proteins o 98.9 7.3E-09 1.6E-13 68.2 7.4 97 72-180 3-100 (171)
356 cd01849 YlqF_related_GTPase Yl 98.9 1.3E-08 2.8E-13 65.9 7.9 82 89-179 1-83 (155)
357 cd01856 YlqF YlqF. Proteins o 98.9 1.5E-08 3.3E-13 66.7 8.2 54 18-74 114-170 (171)
358 PRK09563 rbgA GTPase YlqF; Rev 98.9 1.9E-08 4.2E-13 71.6 9.1 56 17-75 119-177 (287)
359 cd01859 MJ1464 MJ1464. This f 98.9 1.8E-08 3.9E-13 65.4 8.3 55 18-73 100-155 (156)
360 TIGR03596 GTPase_YlqF ribosome 98.9 1.8E-08 3.8E-13 71.4 8.6 54 18-74 117-173 (276)
361 TIGR03596 GTPase_YlqF ribosome 98.9 1.6E-08 3.5E-13 71.6 8.4 99 72-182 5-104 (276)
362 cd01851 GBP Guanylate-binding 98.9 1.1E-07 2.3E-12 65.3 11.7 83 18-100 6-104 (224)
363 COG1618 Predicted nucleotide k 98.8 3.6E-07 7.7E-12 58.1 12.5 147 17-182 3-177 (179)
364 TIGR03597 GTPase_YqeH ribosome 98.8 7.6E-09 1.6E-13 75.8 5.7 99 74-179 50-151 (360)
365 COG0012 Predicted GTPase, prob 98.8 4.9E-08 1.1E-12 70.1 9.1 80 19-98 2-108 (372)
366 KOG2486 Predicted GTPase [Gene 98.8 1.5E-08 3.2E-13 69.7 5.9 155 16-178 133-313 (320)
367 TIGR00092 GTP-binding protein 98.8 6.9E-08 1.5E-12 70.2 9.6 79 20-98 3-108 (368)
368 cd01849 YlqF_related_GTPase Yl 98.8 7E-08 1.5E-12 62.5 7.8 54 17-73 98-154 (155)
369 PRK09563 rbgA GTPase YlqF; Rev 98.7 6.4E-08 1.4E-12 68.9 7.9 100 71-182 7-107 (287)
370 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 5.6E-08 1.2E-12 61.9 7.0 80 81-168 5-84 (141)
371 PRK10416 signal recognition pa 98.7 2.1E-07 4.6E-12 67.0 10.2 138 19-173 114-302 (318)
372 KOG1491 Predicted GTP-binding 98.7 1.1E-07 2.4E-12 67.3 7.9 82 17-98 18-125 (391)
373 PRK14974 cell division protein 98.7 1.1E-07 2.4E-12 68.7 8.1 94 63-173 222-322 (336)
374 COG5192 BMS1 GTP-binding prote 98.7 1.2E-07 2.6E-12 71.5 7.9 111 18-137 68-179 (1077)
375 PF03193 DUF258: Protein of un 98.7 5.6E-08 1.2E-12 62.6 5.3 23 20-42 36-58 (161)
376 COG1161 Predicted GTPases [Gen 98.7 1.1E-07 2.5E-12 68.6 7.4 55 17-74 130-187 (322)
377 cd03112 CobW_like The function 98.6 2.3E-07 5.1E-12 60.2 7.9 21 22-42 3-23 (158)
378 TIGR00064 ftsY signal recognit 98.6 3.2E-07 7E-12 64.7 9.2 95 62-173 153-260 (272)
379 KOG1534 Putative transcription 98.6 3.4E-07 7.4E-12 60.8 8.5 117 64-181 98-251 (273)
380 PRK12288 GTPase RsgA; Reviewed 98.6 1.9E-07 4.2E-12 67.9 7.8 54 22-78 208-271 (347)
381 TIGR03348 VI_IcmF type VI secr 98.6 5.6E-07 1.2E-11 75.2 11.0 112 22-135 114-257 (1169)
382 KOG1487 GTP-binding protein DR 98.6 3.3E-07 7.2E-12 62.7 7.6 81 20-100 60-149 (358)
383 cd03114 ArgK-like The function 98.6 1.9E-07 4E-12 59.9 5.7 58 63-132 91-148 (148)
384 PRK01889 GTPase RsgA; Reviewed 98.6 7.5E-07 1.6E-11 65.3 9.5 84 85-177 110-193 (356)
385 PRK13796 GTPase YqeH; Provisio 98.5 4.3E-07 9.3E-12 66.8 7.4 54 19-75 160-221 (365)
386 COG0523 Putative GTPases (G3E 98.5 4.7E-06 1E-10 60.0 11.9 133 22-163 4-184 (323)
387 TIGR03597 GTPase_YqeH ribosome 98.5 4.3E-07 9.4E-12 66.7 6.8 55 19-76 154-216 (360)
388 PF02492 cobW: CobW/HypB/UreG, 98.5 2E-07 4.4E-12 61.8 4.6 78 63-146 84-167 (178)
389 PRK13796 GTPase YqeH; Provisio 98.5 7.3E-07 1.6E-11 65.6 7.5 97 76-180 58-158 (365)
390 TIGR01425 SRP54_euk signal rec 98.5 2.3E-06 5E-11 63.7 10.1 110 19-135 100-253 (429)
391 PRK12289 GTPase RsgA; Reviewed 98.5 4.2E-07 9.2E-12 66.2 6.1 52 22-76 175-236 (352)
392 TIGR00157 ribosome small subun 98.4 7.4E-07 1.6E-11 62.0 6.5 52 21-76 122-183 (245)
393 COG1162 Predicted GTPases [Gen 98.4 1.5E-06 3.2E-11 61.2 7.3 54 21-77 166-229 (301)
394 cd03115 SRP The signal recogni 98.4 1.5E-06 3.3E-11 57.3 6.2 67 63-136 82-154 (173)
395 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2.7E-06 5.9E-11 60.6 7.5 55 20-77 162-226 (287)
396 KOG0469 Elongation factor 2 [T 98.3 7.4E-07 1.6E-11 66.5 4.3 112 18-134 18-163 (842)
397 KOG2423 Nucleolar GTPase [Gene 98.3 5E-07 1.1E-11 65.4 3.0 71 3-74 291-362 (572)
398 PRK11537 putative GTP-binding 98.3 1.1E-05 2.4E-10 58.2 10.0 67 64-136 91-165 (318)
399 PF00448 SRP54: SRP54-type pro 98.3 8.9E-07 1.9E-11 59.4 3.6 67 62-135 82-154 (196)
400 PRK13695 putative NTPase; Prov 98.3 6.1E-05 1.3E-09 49.8 11.9 21 20-40 1-21 (174)
401 PRK00098 GTPase RsgA; Reviewed 98.3 5.7E-06 1.2E-10 59.3 7.5 24 20-43 165-188 (298)
402 PF09547 Spore_IV_A: Stage IV 98.2 6.8E-05 1.5E-09 55.3 12.6 23 18-40 16-38 (492)
403 PRK10867 signal recognition pa 98.2 6.5E-06 1.4E-10 61.6 7.1 67 62-135 182-254 (433)
404 PRK14722 flhF flagellar biosyn 98.2 7.7E-06 1.7E-10 60.0 6.5 23 19-41 137-159 (374)
405 TIGR00959 ffh signal recogniti 98.1 1.3E-05 2.7E-10 60.1 7.4 79 62-147 181-266 (428)
406 TIGR02475 CobW cobalamin biosy 98.1 4E-05 8.8E-10 55.9 9.9 79 63-147 92-199 (341)
407 KOG0780 Signal recognition par 98.1 1E-05 2.2E-10 58.6 6.3 55 59-113 179-239 (483)
408 PRK11889 flhF flagellar biosyn 98.1 1.5E-05 3.3E-10 58.6 7.0 23 18-40 240-262 (436)
409 cd01983 Fer4_NifH The Fer4_Nif 98.1 7.6E-05 1.6E-09 43.9 8.7 97 22-129 2-99 (99)
410 KOG2484 GTPase [General functi 98.1 4.2E-06 9.2E-11 60.6 3.5 65 7-73 240-306 (435)
411 COG3640 CooC CO dehydrogenase 98.0 5.4E-05 1.2E-09 51.4 8.2 64 64-134 134-198 (255)
412 PRK12727 flagellar biosynthesi 98.0 3.3E-05 7.2E-10 58.9 7.9 110 18-135 349-498 (559)
413 COG0541 Ffh Signal recognition 98.0 1.3E-05 2.8E-10 59.0 5.6 96 18-113 99-238 (451)
414 COG1162 Predicted GTPases [Gen 98.0 2.2E-05 4.8E-10 55.4 6.4 88 85-179 77-165 (301)
415 KOG1533 Predicted GTPase [Gene 98.0 7.8E-06 1.7E-10 55.3 3.8 21 20-40 3-23 (290)
416 PF05621 TniB: Bacterial TniB 98.0 0.00013 2.9E-09 51.7 9.8 118 4-131 46-190 (302)
417 COG0552 FtsY Signal recognitio 98.0 1.9E-05 4.1E-10 56.4 5.7 111 18-135 138-298 (340)
418 COG1419 FlhF Flagellar GTP-bin 98.0 0.0001 2.2E-09 54.2 9.4 110 19-135 203-352 (407)
419 PRK00771 signal recognition pa 98.0 2.6E-05 5.6E-10 58.6 6.5 23 18-40 94-116 (437)
420 KOG1424 Predicted GTP-binding 98.0 1.1E-05 2.5E-10 60.3 4.4 51 19-73 314-368 (562)
421 PRK14721 flhF flagellar biosyn 98.0 2.4E-05 5.2E-10 58.3 6.1 23 19-41 191-213 (420)
422 PF13207 AAA_17: AAA domain; P 98.0 7.9E-06 1.7E-10 50.5 3.1 21 21-41 1-21 (121)
423 cd00009 AAA The AAA+ (ATPases 97.9 0.00032 6.9E-09 44.4 10.4 26 18-43 18-43 (151)
424 PRK08118 topology modulation p 97.9 9.3E-06 2E-10 53.2 3.1 21 21-41 3-23 (167)
425 KOG0057 Mitochondrial Fe/S clu 97.9 5.7E-05 1.2E-09 57.2 7.5 25 16-40 375-399 (591)
426 cd02038 FleN-like FleN is a me 97.9 0.00021 4.5E-09 45.4 9.1 104 24-133 5-109 (139)
427 KOG2485 Conserved ATP/GTP bind 97.9 3.8E-05 8.1E-10 54.2 6.0 25 17-41 141-165 (335)
428 PRK12724 flagellar biosynthesi 97.9 2.5E-05 5.4E-10 58.0 5.4 21 20-40 224-244 (432)
429 PRK07261 topology modulation p 97.9 1E-05 2.3E-10 53.2 3.0 21 20-40 1-21 (171)
430 COG0563 Adk Adenylate kinase a 97.9 1.1E-05 2.4E-10 53.3 3.0 23 20-42 1-23 (178)
431 PF13555 AAA_29: P-loop contai 97.9 1.7E-05 3.7E-10 42.5 3.0 20 21-40 25-44 (62)
432 PRK04195 replication factor C 97.8 0.00023 5E-09 54.6 9.9 37 5-41 24-61 (482)
433 PRK05703 flhF flagellar biosyn 97.8 0.0002 4.2E-09 53.9 9.1 66 63-135 299-371 (424)
434 PRK06696 uridine kinase; Valid 97.8 3.7E-05 8E-10 52.9 4.9 38 3-40 6-43 (223)
435 KOG0781 Signal recognition par 97.8 5.3E-05 1.2E-09 56.5 5.8 120 15-135 374-544 (587)
436 cd03110 Fer4_NifH_child This p 97.8 0.0011 2.3E-08 44.0 11.7 67 62-135 91-157 (179)
437 PRK12726 flagellar biosynthesi 97.8 0.00044 9.6E-09 50.9 10.4 23 18-40 205-227 (407)
438 COG1116 TauB ABC-type nitrate/ 97.8 2.3E-05 4.9E-10 53.8 3.6 21 21-41 31-51 (248)
439 PF06858 NOG1: Nucleolar GTP-b 97.8 0.00012 2.5E-09 38.4 5.3 44 87-132 13-58 (58)
440 COG3523 IcmF Type VI protein s 97.8 0.00014 3.1E-09 60.4 8.5 112 22-135 128-270 (1188)
441 TIGR03574 selen_PSTK L-seryl-t 97.8 5.3E-05 1.1E-09 53.0 5.4 19 22-40 2-20 (249)
442 PF13671 AAA_33: AAA domain; P 97.8 1.9E-05 4.1E-10 50.3 2.9 19 22-40 2-20 (143)
443 COG1136 SalX ABC-type antimicr 97.8 1.9E-05 4.2E-10 53.7 2.9 23 20-42 32-54 (226)
444 PF04665 Pox_A32: Poxvirus A32 97.8 2.5E-05 5.4E-10 53.8 3.5 27 16-42 10-36 (241)
445 COG1126 GlnQ ABC-type polar am 97.8 2.3E-05 5E-10 52.6 3.1 26 18-43 27-52 (240)
446 COG4619 ABC-type uncharacteriz 97.8 7.2E-05 1.6E-09 48.4 5.2 58 19-88 29-86 (223)
447 PRK10751 molybdopterin-guanine 97.8 6.8E-05 1.5E-09 49.2 5.2 22 20-41 7-28 (173)
448 cd02019 NK Nucleoside/nucleoti 97.8 2.9E-05 6.4E-10 43.0 2.9 20 22-41 2-21 (69)
449 PRK12723 flagellar biosynthesi 97.8 0.00055 1.2E-08 50.9 10.1 110 19-135 174-326 (388)
450 cd03222 ABC_RNaseL_inhibitor T 97.7 0.00024 5.2E-09 47.0 7.5 25 18-42 24-48 (177)
451 PRK06995 flhF flagellar biosyn 97.7 0.00012 2.6E-09 55.6 6.8 21 20-40 257-277 (484)
452 cd01129 PulE-GspE PulE/GspE Th 97.7 0.00031 6.7E-09 49.6 8.4 34 9-42 70-103 (264)
453 PF13521 AAA_28: AAA domain; P 97.7 1.9E-05 4.2E-10 51.5 2.0 22 21-42 1-22 (163)
454 PF05729 NACHT: NACHT domain 97.7 0.00039 8.4E-09 45.2 8.1 20 22-41 3-22 (166)
455 PF00005 ABC_tran: ABC transpo 97.7 4E-05 8.6E-10 48.5 3.1 25 18-42 10-34 (137)
456 PRK06217 hypothetical protein; 97.7 4.5E-05 9.8E-10 50.8 3.2 22 20-41 2-23 (183)
457 PRK05480 uridine/cytidine kina 97.7 5.2E-05 1.1E-09 51.6 3.5 26 16-41 3-28 (209)
458 PF13191 AAA_16: AAA ATPase do 97.7 5.5E-05 1.2E-09 50.3 3.5 36 5-40 10-45 (185)
459 PHA00729 NTP-binding motif con 97.7 0.00011 2.4E-09 50.1 4.9 28 14-41 12-39 (226)
460 PRK14723 flhF flagellar biosyn 97.6 0.00011 2.5E-09 58.5 5.6 21 21-41 187-207 (767)
461 PRK06731 flhF flagellar biosyn 97.6 0.001 2.2E-08 47.0 9.6 111 19-136 75-226 (270)
462 cd03116 MobB Molybdenum is an 97.6 5.1E-05 1.1E-09 49.3 2.9 21 21-41 3-23 (159)
463 cd00820 PEPCK_HprK Phosphoenol 97.6 5.7E-05 1.2E-09 45.3 2.8 21 20-40 16-36 (107)
464 PF03266 NTPase_1: NTPase; In 97.6 6.1E-05 1.3E-09 49.4 3.1 20 21-40 1-20 (168)
465 KOG2743 Cobalamin synthesis pr 97.6 0.00077 1.7E-08 47.7 8.5 22 21-42 59-80 (391)
466 cd03238 ABC_UvrA The excision 97.6 5.4E-05 1.2E-09 50.0 2.9 25 16-40 18-42 (176)
467 PRK01889 GTPase RsgA; Reviewed 97.6 0.00021 4.5E-09 52.7 6.1 24 20-43 196-219 (356)
468 PF13238 AAA_18: AAA domain; P 97.6 5.6E-05 1.2E-09 47.1 2.8 20 22-41 1-20 (129)
469 cd02042 ParA ParA and ParB of 97.6 0.0012 2.6E-08 39.5 8.6 81 22-111 2-84 (104)
470 PRK09270 nucleoside triphospha 97.6 0.00013 2.8E-09 50.4 4.8 25 17-41 31-55 (229)
471 PRK03839 putative kinase; Prov 97.6 6.3E-05 1.4E-09 49.9 3.1 21 21-41 2-22 (180)
472 PRK06547 hypothetical protein; 97.6 0.00015 3.2E-09 47.8 4.7 26 16-41 12-37 (172)
473 COG1120 FepC ABC-type cobalami 97.6 6.2E-05 1.4E-09 52.3 3.0 21 21-41 30-50 (258)
474 TIGR00235 udk uridine kinase. 97.6 8.9E-05 1.9E-09 50.4 3.6 25 17-41 4-28 (207)
475 PF00004 AAA: ATPase family as 97.5 8E-05 1.7E-09 46.6 3.0 20 22-41 1-20 (132)
476 cd04178 Nucleostemin_like Nucl 97.5 0.00012 2.6E-09 48.2 3.9 55 89-146 1-55 (172)
477 cd00071 GMPK Guanosine monopho 97.5 8.4E-05 1.8E-09 47.1 3.0 21 22-42 2-22 (137)
478 PRK14530 adenylate kinase; Pro 97.5 8.2E-05 1.8E-09 50.9 3.1 21 20-40 4-24 (215)
479 PRK10078 ribose 1,5-bisphospho 97.5 7.7E-05 1.7E-09 49.8 2.9 22 21-42 4-25 (186)
480 TIGR02322 phosphon_PhnN phosph 97.5 8.3E-05 1.8E-09 49.3 3.0 21 21-41 3-23 (179)
481 cd01130 VirB11-like_ATPase Typ 97.5 0.00012 2.6E-09 48.9 3.8 26 17-42 23-48 (186)
482 COG1936 Predicted nucleotide k 97.5 8.5E-05 1.8E-09 48.1 2.8 21 20-40 1-21 (180)
483 PF03215 Rad17: Rad17 cell cyc 97.5 0.0011 2.4E-08 51.2 9.2 38 4-41 28-67 (519)
484 COG3840 ThiQ ABC-type thiamine 97.5 0.00012 2.6E-09 48.0 3.5 24 19-42 25-48 (231)
485 COG1117 PstB ABC-type phosphat 97.5 7.1E-05 1.5E-09 50.3 2.5 19 22-40 36-54 (253)
486 smart00763 AAA_PrkA PrkA AAA d 97.5 0.00016 3.5E-09 52.7 4.6 38 4-41 60-100 (361)
487 cd02036 MinD Bacterial cell di 97.5 0.0043 9.4E-08 40.9 11.2 65 65-135 64-128 (179)
488 PLN02674 adenylate kinase 97.5 0.00015 3.2E-09 50.4 4.2 24 17-40 29-52 (244)
489 TIGR00554 panK_bact pantothena 97.5 0.00018 3.9E-09 51.3 4.6 25 16-40 59-83 (290)
490 PRK08233 hypothetical protein; 97.5 0.00011 2.3E-09 48.8 3.3 23 19-41 3-25 (182)
491 COG3839 MalK ABC-type sugar tr 97.5 0.00012 2.5E-09 53.1 3.6 21 22-42 32-52 (338)
492 KOG3347 Predicted nucleotide k 97.5 7.4E-05 1.6E-09 47.2 2.3 24 17-40 5-28 (176)
493 cd02023 UMPK Uridine monophosp 97.5 9.3E-05 2E-09 49.9 3.0 20 22-41 2-21 (198)
494 TIGR01360 aden_kin_iso1 adenyl 97.5 9.2E-05 2E-09 49.4 2.9 21 20-40 4-24 (188)
495 smart00382 AAA ATPases associa 97.5 0.00011 2.4E-09 46.2 3.2 25 20-44 3-27 (148)
496 TIGR00150 HI0065_YjeE ATPase, 97.5 0.00055 1.2E-08 42.9 6.1 24 19-42 22-45 (133)
497 cd03264 ABC_drug_resistance_li 97.5 8.3E-05 1.8E-09 50.7 2.7 25 17-42 24-48 (211)
498 COG1763 MobB Molybdopterin-gua 97.5 0.0018 3.9E-08 42.0 8.4 19 22-40 5-23 (161)
499 PF03205 MobB: Molybdopterin g 97.5 0.00013 2.8E-09 46.3 3.2 21 21-41 2-22 (140)
500 cd03243 ABC_MutS_homologs The 97.5 0.0016 3.5E-08 44.1 8.6 21 20-40 30-50 (202)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=7.9e-38 Score=207.40 Aligned_cols=172 Identities=34% Similarity=0.630 Sum_probs=148.8
Q ss_pred HhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCE
Q 030000 11 LRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSA 90 (184)
Q Consensus 11 ~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 90 (184)
.++.+.++.+||+++|+.+||||||++++..+.+. .+.+|.+.....++..++.+.+||+||++++...+..+++++|+
T Consensus 9 ~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~ 87 (181)
T PLN00223 9 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
T ss_pred HHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 34445577899999999999999999999887775 46788888888888889999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 91 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|+|+++++++.....++..++......++|+++++||+|+....+.+++.+.++......+.+.++++||++|+|++
T Consensus 88 iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 99999999999999888888877665444679999999999998877778888888776555566678899999999999
Q ss_pred HHHHHHHHHhhhc
Q 030000 171 AVIDWLIKHSKTA 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
++|+||.+.+.++
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988764
No 2
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-39 Score=204.36 Aligned_cols=157 Identities=30% Similarity=0.491 Sum_probs=136.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.-|||+++|+.|+|||+|+.++..+.+...+..|+|+.+.. ++.+.+++++|||+||++|++....+|++++++|+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~ 87 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF 87 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence 35999999999999999999999999999999999977764 55677999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-----HHHHHHHhCCCccCCCcee-EEEeeeccCC
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-----KQALVDQLGLESITDREVC-CYMISCKDSI 167 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 167 (184)
|||+++.+||.++..|+.++-++.. .++|.++|+||+|+.+... .+++...++. + ++++||+++.
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~--------~~f~ETSAK~~~ 158 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGI--------PIFLETSAKDST 158 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHHHHHhcCC--------cceeecccCCcc
Confidence 9999999999999999999866544 6799999999999976432 2333333332 4 9999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030000 168 NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~~ 183 (184)
|++++|..|...++.+
T Consensus 159 NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 159 NVEDAFLTLAKELKQR 174 (205)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999888764
No 3
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.5e-36 Score=201.61 Aligned_cols=171 Identities=33% Similarity=0.618 Sum_probs=144.9
Q ss_pred HhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCE
Q 030000 11 LRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSA 90 (184)
Q Consensus 11 ~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 90 (184)
+++...++.+||+++|++|||||||++++..+.+.. +.+|.+.....+...++.+.+||+||++++...+..+++++|+
T Consensus 9 ~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ 87 (182)
T PTZ00133 9 FKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNG 87 (182)
T ss_pred HHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence 444556778999999999999999999998777764 5678887777778888999999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 91 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|+|++++.++.....++..++......++|+++|+||.|+.+.....++.+.++......+.+.++++||++|.|++
T Consensus 88 iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 88 LIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 99999999999999888888877655444578999999999997666666777777765555556678899999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|++|.+.+.+
T Consensus 168 e~~~~l~~~i~~ 179 (182)
T PTZ00133 168 EGLDWLSANIKK 179 (182)
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-37 Score=197.69 Aligned_cols=163 Identities=22% Similarity=0.353 Sum_probs=140.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.+|++++|+.++||||||++++.+.|...+.+|+|+++.. ++...+.+++|||+||++|+++.+.|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 45999999999999999999999999999999999977654 45667999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|||+++..+|++...|+....+.....++-+++|+||.||.+..... ...+....+..+..|.++||+.|+||.++|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs---~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVS---IEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhh---HHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 99999999999999999999999888789999999999997764322 222222223334579999999999999999
Q ss_pred HHHHHHhhhc
Q 030000 174 DWLIKHSKTA 183 (184)
Q Consensus 174 ~~i~~~~~~~ 183 (184)
..|...++.+
T Consensus 178 rrIaa~l~~~ 187 (221)
T KOG0094|consen 178 RRIAAALPGM 187 (221)
T ss_pred HHHHHhccCc
Confidence 9998887653
No 5
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=1.2e-36 Score=200.95 Aligned_cols=166 Identities=34% Similarity=0.631 Sum_probs=143.1
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
..++.+||+++|++|||||||++++..+.+. .+.+|.+.....+....+.+.+||+||++++...+..+++++|++|+|
T Consensus 9 ~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 9 FGNKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 3456799999999999999999999877774 466888887777778889999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+|++++.++.....++..++......++|+++|+||+|+......+++.+.++......+.+.++++||++|.|++++|+
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~ 167 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLT 167 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHH
Confidence 99999999999998888887654446799999999999977666677777777665556677788999999999999999
Q ss_pred HHHHHhh
Q 030000 175 WLIKHSK 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
||.+.+.
T Consensus 168 ~l~~~~~ 174 (175)
T smart00177 168 WLSNNLK 174 (175)
T ss_pred HHHHHhc
Confidence 9988764
No 6
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-37 Score=196.88 Aligned_cols=161 Identities=25% Similarity=0.416 Sum_probs=136.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Eeec--CEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|+.++|||||+-|+..+.|.+...+|+|..+.. +... .+++.||||+|+++|+++-+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 357999999999999999999999999999889999955543 4433 488999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--cCHHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|||+++.+||.....|+.++..... +++-+.+|+||+|+.+. ...++...... ..+..++++||++|.|++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe-----~~gll~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAE-----SQGLLFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHH-----hcCCEEEEEecccccCHH
Confidence 99999999999999999999977765 78888899999999873 22333222221 234469999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030000 171 AVIDWLIKHSKTA 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
++|..|.+.++..
T Consensus 157 ~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 157 EIFQAIAEKLPCS 169 (200)
T ss_pred HHHHHHHHhccCc
Confidence 9999999998764
No 7
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=100.00 E-value=5.1e-37 Score=186.88 Aligned_cols=183 Identities=72% Similarity=1.168 Sum_probs=175.5
Q ss_pred CchHHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHh
Q 030000 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80 (184)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 80 (184)
|++++....|+++.+-+.++.+.++|..+||||||++.+..+.+.+...||.|++..++..+++.+.+||.||+++|++.
T Consensus 2 ~~~~~k~L~wi~~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsm 81 (186)
T KOG0075|consen 2 CAKLRKKLVWICNSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 81 (186)
T ss_pred hhHHHHHHHHHHHHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEE
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|..|++.+++++||+|+.+++........+..++......++|+++++||.|+..+-....+.+++++.....+++..|.
T Consensus 82 WerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~s 161 (186)
T KOG0075|consen 82 WERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFS 161 (186)
T ss_pred HHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCHHHHHHHHHHHhhhc
Q 030000 161 ISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
+|+++..||+.+.+|+.++-...
T Consensus 162 iScke~~Nid~~~~Wli~hsk~~ 184 (186)
T KOG0075|consen 162 ISCKEKVNIDITLDWLIEHSKSL 184 (186)
T ss_pred EEEcCCccHHHHHHHHHHHhhhh
Confidence 99999999999999999987653
No 8
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=3.1e-36 Score=197.77 Aligned_cols=161 Identities=35% Similarity=0.646 Sum_probs=137.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
++.+||+++|++|+|||||++++..+.+. .+.+|.+.....+....+.+.+||+||++++...+..+++++|++++|+|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D 85 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 85 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 56799999999999999999999877765 45678887777777888999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
++++.++.....++...+......++|+++|+||+|+......++..+.++........++++++||++|.|++++|+||
T Consensus 86 ~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 86 SADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred CCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence 99999999998888888765444578999999999997655666777776655445556689999999999999999999
Q ss_pred HH
Q 030000 177 IK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 166 ~~ 167 (168)
T cd04149 166 SS 167 (168)
T ss_pred hc
Confidence 65
No 9
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=6.2e-36 Score=194.78 Aligned_cols=158 Identities=33% Similarity=0.637 Sum_probs=135.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+||+++|.+|||||||++++..+.+. .+.+|.+.....+....+.+.+||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~ 79 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC
Confidence 58999999999999999999888776 46788888777778888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 100 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
+.++.....++..+.......+.|+++++||+|+......+++.+.+.......+.+.++++||++|.|++++|+||.+
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 80 RERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 9999999888887765544456899999999999765555566666665555556677889999999999999999865
No 10
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=1.2e-34 Score=191.08 Aligned_cols=170 Identities=36% Similarity=0.722 Sum_probs=152.1
Q ss_pred HHhhhhc-cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 10 WLRSLFF-KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 10 ~~~~~~~-~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
.+++... +++.+|+++|+.||||||+++++..+... ...||.|.....+...++.+.+||.+|+..++..|..+++++
T Consensus 4 ~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~ 82 (175)
T PF00025_consen 4 VLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNA 82 (175)
T ss_dssp HHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTE
T ss_pred HHHHhcccCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeeeCcEEEEEEeccccccccccceeecccc
Confidence 3444443 78899999999999999999999876544 477899999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccC-CCceeEEEeeeccCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT-DREVCCYMISCKDSI 167 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 167 (184)
|++|||+|+++.+.+......+..++......++|+++++||+|+......+++.+.+.+.... .+.+.++.|||.+|+
T Consensus 83 ~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~ 162 (175)
T PF00025_consen 83 DGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE 162 (175)
T ss_dssp SEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred ceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence 9999999999999999999999999887666789999999999998888888888888877765 678899999999999
Q ss_pred CHHHHHHHHHHHh
Q 030000 168 NIDAVIDWLIKHS 180 (184)
Q Consensus 168 ~i~~l~~~i~~~~ 180 (184)
|+.+.++||.+.+
T Consensus 163 Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 163 GVDEGLEWLIEQI 175 (175)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC
Confidence 9999999999864
No 11
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=2.4e-34 Score=189.16 Aligned_cols=161 Identities=30% Similarity=0.582 Sum_probs=135.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 100 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
||+++|++|||||||++++.++.+. .+.+|.+.....++..++.+.+||+||++++...+..+++++|++++|+|++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~ 79 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHR 79 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcH
Confidence 6899999999999999999988765 467888887777888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc-CCCceeEEEeeeccCCCHHHHHHHHHHH
Q 030000 101 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 179 (184)
.++.....|+..++......+.|+++++||+|+......++..+.+..... ..+.+.++++||++|.||+++|+|+.+.
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 80 DRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred HHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 999999999988876654556899999999999766566666555543322 2234578899999999999999999987
Q ss_pred hhh
Q 030000 180 SKT 182 (184)
Q Consensus 180 ~~~ 182 (184)
+..
T Consensus 160 ~~~ 162 (169)
T cd04158 160 LVA 162 (169)
T ss_pred Hhh
Confidence 654
No 12
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=4.5e-34 Score=188.70 Aligned_cols=161 Identities=30% Similarity=0.578 Sum_probs=138.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|++|+|||||++++..+.+.. ..+|.+.....+......+.+||+||++++...+..+++++|++++|+|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID 91 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence 357899999999999999999999888764 5788888877888888999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
+++++++.....++..++......++|+++++||+|+....+.+++.+.++........++++++||++|+|+++++++|
T Consensus 92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 99998888888888877665545679999999999997655666777777655444556789999999999999999999
Q ss_pred HH
Q 030000 177 IK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 172 ~~ 173 (174)
T cd04153 172 AS 173 (174)
T ss_pred hc
Confidence 75
No 13
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-35 Score=187.84 Aligned_cols=154 Identities=21% Similarity=0.330 Sum_probs=133.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+|++++|+.|+|||+|+.+++...|.+....|+|+.+. .++...+++++|||+|++.|++....+++.+.++++
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 3689999999999999999999999999999999996654 366778999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-----HHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|||+++.++|..+..|+..+..+. .++..+++++||+|+....++ +.+.+..+ ..++++||++++|
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehg--------LifmETSakt~~~ 155 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHG--------LIFMETSAKTAEN 155 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcC--------ceeehhhhhhhhh
Confidence 999999999999999999996654 478999999999999664332 33444433 4689999999999
Q ss_pred HHHHHHHHHHHh
Q 030000 169 IDAVIDWLIKHS 180 (184)
Q Consensus 169 i~~l~~~i~~~~ 180 (184)
++|+|......+
T Consensus 156 VEEaF~nta~~I 167 (216)
T KOG0098|consen 156 VEEAFINTAKEI 167 (216)
T ss_pred HHHHHHHHHHHH
Confidence 999998776655
No 14
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=3.8e-34 Score=188.97 Aligned_cols=161 Identities=32% Similarity=0.605 Sum_probs=135.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|++|||||||++++.+..+ ....+|.++....+....+.+.+||+||++.+...+..+++++|++++|+|
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVD 90 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 4568999999999999999999987644 356678887777777778999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
++++.++.....++..++......++|+++++||+|+.+....++..+.+.........++++++||++|.|++++++++
T Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 91 SSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 99998998888888877665445689999999999997765666666666544334556789999999999999999998
Q ss_pred HH
Q 030000 177 IK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 171 ~~ 172 (173)
T cd04154 171 VD 172 (173)
T ss_pred hc
Confidence 75
No 15
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-34 Score=183.89 Aligned_cols=171 Identities=34% Similarity=0.665 Sum_probs=161.7
Q ss_pred hhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 13 SLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.++.+++.+|+++|..++||||++.++..+++... .||+|++...++.++..+.+||.+|+++++..|..|+++.+++|
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 46778999999999999999999999988887655 99999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+|.+|++++......+..++......+.|+++++||.|+...-+..++.+.+++..+..+.+.+..|||.+|+|+.+.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHH
Confidence 99999999999999999999999888789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcC
Q 030000 173 IDWLIKHSKTAK 184 (184)
Q Consensus 173 ~~~i~~~~~~~~ 184 (184)
++|+.+.+.+++
T Consensus 170 l~wl~~~~~~~~ 181 (181)
T KOG0070|consen 170 LDWLSNNLKKRR 181 (181)
T ss_pred HHHHHHHHhccC
Confidence 999999988754
No 16
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.8e-34 Score=193.54 Aligned_cols=158 Identities=22% Similarity=0.368 Sum_probs=125.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.|+++|..|+|||||++++..+.+...+.+|.+..+. .+.. ..+.+++||++|++++...+..+++++|++|+|||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999999998888888875443 3443 34889999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
++++++|+.+..|+..+. .....++|+++|+||+|+...... .+..+.+... ...+.++++||++|.||+++|++
T Consensus 82 vtd~~Sf~~l~~w~~~i~-~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~---~~~~~~~etSAktg~gV~e~F~~ 157 (202)
T cd04120 82 ITKKETFDDLPKWMKMID-KYASEDAELLLVGNKLDCETDREISRQQGEKFAQQ---ITGMRFCEASAKDNFNVDEIFLK 157 (202)
T ss_pred CcCHHHHHHHHHHHHHHH-HhCCCCCcEEEEEECcccccccccCHHHHHHHHHh---cCCCEEEEecCCCCCCHHHHHHH
Confidence 999999999998887653 333467999999999998643222 1111111100 11346999999999999999999
Q ss_pred HHHHhhh
Q 030000 176 LIKHSKT 182 (184)
Q Consensus 176 i~~~~~~ 182 (184)
+.+.+.+
T Consensus 158 l~~~~~~ 164 (202)
T cd04120 158 LVDDILK 164 (202)
T ss_pred HHHHHHH
Confidence 9987754
No 17
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-35 Score=189.92 Aligned_cols=157 Identities=25% Similarity=0.427 Sum_probs=134.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|||||+++.++..+.|...+.+|+|+.+.. .....+.+++|||+||++|+.....|++.+++++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 356999999999999999999999999999999999977754 3455688999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-----HHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-----KQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|||+++..+|+++..|+..+ .......+|.++|+||+|+..... -+.+...+ +++++++||++|.
T Consensus 90 LvyDitne~Sfeni~~W~~~I-~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~--------G~~F~EtSAk~~~ 160 (207)
T KOG0078|consen 90 LVYDITNEKSFENIRNWIKNI-DEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREY--------GIKFFETSAKTNF 160 (207)
T ss_pred EEEEccchHHHHHHHHHHHHH-HhhCCCCCcEEEeeccccccccccccHHHHHHHHHHh--------CCeEEEccccCCC
Confidence 999999999999999977766 444556999999999999966322 13333333 3469999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
||++.|-.+.+.+.+
T Consensus 161 NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 161 NIEEAFLSLARDILQ 175 (207)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988874
No 18
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=8.2e-35 Score=191.71 Aligned_cols=159 Identities=18% Similarity=0.272 Sum_probs=128.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|.+|+|||||++++..+.+...+.+|.+..+. . +....+.+.+||+||++++...+..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 479999999999999999999999998888888875443 2 3344578999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|++++.++.....|+..+.......++|+++|+||+|+...... ++.. .+ ....++++++|||++|.||+++|
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~----a~~~~~~~~e~Sa~~~~~v~~~f 156 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGR-NL----AREFNCPFFETSAALRHYIDDAF 156 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHH-HH----HHHhCCEEEEEecCCCCCHHHHH
Confidence 99999999999887766544434467999999999998653222 1111 11 11234579999999999999999
Q ss_pred HHHHHHhhh
Q 030000 174 DWLIKHSKT 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+++...+.+
T Consensus 157 ~~l~~~~~~ 165 (172)
T cd04141 157 HGLVREIRR 165 (172)
T ss_pred HHHHHHHHH
Confidence 999987764
No 19
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=8.7e-34 Score=185.43 Aligned_cols=158 Identities=32% Similarity=0.662 Sum_probs=131.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGY-SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+|+++|++|||||||++++.+..+ ...+.+|.+.....+...++.+.+||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998763 5566788887777777788999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCC--CCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHH
Q 030000 100 RDSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLI 177 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 177 (184)
+.++.....++..+.... ...++|+++++||+|+.+.....+..+.++........++++++||++|.|+++++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 988888888877776542 235799999999999976555556666655443334456799999999999999999986
Q ss_pred H
Q 030000 178 K 178 (184)
Q Consensus 178 ~ 178 (184)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 5
No 20
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=6.2e-34 Score=189.32 Aligned_cols=158 Identities=20% Similarity=0.343 Sum_probs=128.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|..|+|||||+.++..+.+...+.+|.+..+. .+ +...+.+++||++|++++...+..+++++|++++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 4689999999999999999999998887777777665442 23 3345889999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|||++++.+|..+..|+..+.... ++.|+++|+||.|+.... ..++..+.. ....++++++||++|.||++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a-----~~~~~~~~e~SAk~g~~V~~ 157 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYA-----ERNGMTFFEVSPLCNFNITE 157 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHH-----HHcCCEEEEecCCCCCCHHH
Confidence 999999999999999988885543 579999999999996422 222222211 12345799999999999999
Q ss_pred HHHHHHHHhhh
Q 030000 172 VIDWLIKHSKT 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+++.+.+..
T Consensus 158 ~F~~l~~~i~~ 168 (189)
T cd04121 158 SFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 21
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=187.49 Aligned_cols=167 Identities=24% Similarity=0.404 Sum_probs=136.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
.+..+||+++|++|+|||||++++.+.+|...+..|+|..+.. ++...+.++||||+||++|.++-..+++++|.+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 3456999999999999999999999999999999999966554 445568899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
++|||.+++.+|+++..|..+++.+.. ...-|+++++||+|+......+...+....-......+|+|++|||.+.|
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 999999999999999999999988754 34579999999999966332211111111001123467999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
|.+.|..+...+..
T Consensus 166 V~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 166 VDEAFEEIARRALA 179 (210)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
No 22
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=4.3e-34 Score=191.21 Aligned_cols=163 Identities=20% Similarity=0.266 Sum_probs=126.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
..+||+++|+.|+|||||+.++..+.+...+.+|.+..+. .++...+.+.+|||+|++++...+..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 3589999999999999999999999998888899886554 2445568899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc---------cCCCc-eeEEEeee
Q 030000 95 VDAADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES---------ITDRE-VCCYMISC 163 (184)
Q Consensus 95 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~Sa 163 (184)
||++++.+|+.+.. |...+... .+++|+++|+||.|+.+.....+......... ....+ ++++++||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999974 55544332 25799999999999965322111111111000 01112 47999999
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
++|+||+++|+++.+.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987654
No 23
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.9e-35 Score=181.91 Aligned_cols=162 Identities=26% Similarity=0.406 Sum_probs=139.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|+.|+|||||+-+|..+.|.+....|+|.++. .+....+++.+|||+||++|+.+.+.|++.+.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 3599999999999999999999999999999899996654 356777999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|||++.+++|..+..|+.++-.+...+++-.++|+||+|..++. ...+..++...+...+.++++||++.+|++..|
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R---~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESER---VVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcc---cccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 99999999999999999999888888899999999999974322 222333344445566779999999999999999
Q ss_pred HHHHHHhhh
Q 030000 174 DWLIKHSKT 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.+.+.+.+
T Consensus 167 eelveKIi~ 175 (209)
T KOG0080|consen 167 EELVEKIIE 175 (209)
T ss_pred HHHHHHHhc
Confidence 999988764
No 24
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=4.8e-34 Score=187.91 Aligned_cols=156 Identities=23% Similarity=0.332 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||+.++..+.+...+.+|.+..+.. ++...+.+.+|||+|++++......++++++++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 689999999999999999999999988888998754432 34456889999999999999999999999999999999
Q ss_pred CCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCccccc------------CHHHHHHHhCCCccCCCce-eEEEee
Q 030000 97 AADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEAL------------SKQALVDQLGLESITDREV-CCYMIS 162 (184)
Q Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~S 162 (184)
++++.+|+.+ ..|+..+.... +++|+++|+||+|+.+.. ..++. +.+. ...+. ++++||
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~-~~~a----~~~~~~~~~E~S 154 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQG-EELR----KQIGAAAYIECS 154 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHH-HHHH----HHcCCCEEEECC
Confidence 9999999998 57777664432 479999999999995431 11111 1111 11223 599999
Q ss_pred eccCCCHHHHHHHHHHHhhh
Q 030000 163 CKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~ 182 (184)
|++|.||+++|+.+.+.+.+
T Consensus 155 Ak~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 155 SKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred CCcccCHHHHHHHHHHHHhc
Confidence 99999999999999987654
No 25
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=2.8e-33 Score=173.57 Aligned_cols=178 Identities=31% Similarity=0.579 Sum_probs=157.6
Q ss_pred CchHHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHh
Q 030000 1 MGFLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80 (184)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 80 (184)
|+++.-++..... +++++|+++|..||||||+++++.+.. .....||.|+...+...+.+++++||.+||...++.
T Consensus 1 mg~lsilrk~k~k---erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~ 76 (185)
T KOG0073|consen 1 MGLLSILRKQKLK---EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSY 76 (185)
T ss_pred CcHHHHHHHHHhh---hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEecceEEEEEEcCCcchhHHH
Confidence 5666666655422 358999999999999999999996544 667889999999999999999999999999999999
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc-CCCceeEE
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCY 159 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (184)
|..|+.++|++|+|+|..++.+++.....+...+.....-+.|++++.||.|+......+++...+.+... ...+++++
T Consensus 77 W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~ 156 (185)
T KOG0073|consen 77 WKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLV 156 (185)
T ss_pred HHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEE
Confidence 99999999999999999999999999999998887766677999999999999887888888888888776 77899999
Q ss_pred EeeeccCCCHHHHHHHHHHHhhh
Q 030000 160 MISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 160 ~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.||+.+|+++.+-++|+.+.+-+
T Consensus 157 ~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 157 KCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred EEeccccccHHHHHHHHHHHHHH
Confidence 99999999999999999987754
No 26
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=2.5e-33 Score=183.96 Aligned_cols=157 Identities=34% Similarity=0.574 Sum_probs=136.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 100 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
+|+++|++|||||||++++.+. +...+.+|.+.....+...++.+++||+||++.+...+..+++++|++++|+|+++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~ 79 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDD 79 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCch
Confidence 4899999999999999999866 666778899988778888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccC---CCceeEEEeeeccC------CCHHH
Q 030000 101 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT---DREVCCYMISCKDS------INIDA 171 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~~i~~ 171 (184)
.++.....++..+.......++|+++|+||+|+.......++.+.+...... ...+.+++|||++| .|+.+
T Consensus 80 ~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 80 DRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred hHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHH
Confidence 9999999998888766555689999999999998877777777777665443 23567888999998 89999
Q ss_pred HHHHHHH
Q 030000 172 VIDWLIK 178 (184)
Q Consensus 172 l~~~i~~ 178 (184)
.|+|+.+
T Consensus 160 ~~~wl~~ 166 (167)
T cd04161 160 GLRWLLA 166 (167)
T ss_pred HHHHHhc
Confidence 9999975
No 27
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=6.6e-33 Score=184.53 Aligned_cols=162 Identities=31% Similarity=0.553 Sum_probs=137.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|.+|||||||++++.++.+. .+.+|.+.....+...++++.+||+||+..+...+..+++++|++++|+|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD 93 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVD 93 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 66799999999999999999999987664 34567776666777788999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccC-------CCceeEEEeeeccCCCH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT-------DREVCCYMISCKDSINI 169 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i 169 (184)
++++.++.....++..++......++|+++++||+|+......+++.+.+++.... .+...+++|||++|+|+
T Consensus 94 ~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~ 173 (184)
T smart00178 94 AYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGY 173 (184)
T ss_pred CCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCCh
Confidence 99998888888888877665445679999999999997766778888888764422 25678999999999999
Q ss_pred HHHHHHHHHH
Q 030000 170 DAVIDWLIKH 179 (184)
Q Consensus 170 ~~l~~~i~~~ 179 (184)
+++++||.+.
T Consensus 174 ~~~~~wl~~~ 183 (184)
T smart00178 174 GEGFKWLSQY 183 (184)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 28
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=2.9e-33 Score=182.28 Aligned_cols=157 Identities=39% Similarity=0.707 Sum_probs=129.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 100 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
||+++|++++|||||++++..+.+. ...+|.+.....++..+..+.+||+||++.+...+..+++.++++++|+|++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 79 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDR 79 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 6899999999999999999877765 356777777777778889999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 101 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
.++.....++..+++.....+.|+++++||+|+.+.....++.+.++.........+++++||++|.|++++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 80 DRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 777776676766655444457999999999999765555556555554434445568999999999999999999875
No 29
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.5e-33 Score=186.62 Aligned_cols=158 Identities=17% Similarity=0.235 Sum_probs=125.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+..+||+++|++|+|||||+.++..+.+...+.+|.+..+. .++...+.+.+|||+|++++......+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 35689999999999999999999999998888888875543 234456889999999999999999999999999999
Q ss_pred EEeCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCcccc--------------cCHHHHHHHhCCCccCCCc-ee
Q 030000 94 VVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEA--------------LSKQALVDQLGLESITDRE-VC 157 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~-~~ 157 (184)
|||++++.+|..+ ..|...+.... ++.|+++|+||+|+.+. ...++..+ .....+ .+
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~-----~a~~~~~~~ 155 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN-----MAKQIGAAT 155 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH-----HHHHcCCCE
Confidence 9999999999997 67777665432 57999999999998542 11111111 111223 37
Q ss_pred EEEeeeccCCC-HHHHHHHHHHHhh
Q 030000 158 CYMISCKDSIN-IDAVIDWLIKHSK 181 (184)
Q Consensus 158 ~~~~Sa~~~~~-i~~l~~~i~~~~~ 181 (184)
+++|||++|+| |+++|+.+...+.
T Consensus 156 ~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 156 YIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred EEECCcCCCCCCHHHHHHHHHHHHh
Confidence 99999999998 9999999988654
No 30
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=6.3e-33 Score=184.55 Aligned_cols=164 Identities=28% Similarity=0.521 Sum_probs=130.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe-----ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+.+||+++|++|||||||++++..+.+... .+|.+....... ...+.+.+||+||++++...+..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998877644 566665544432 24688999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccC-CCceeEEEeeeccCCCHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT-DREVCCYMISCKDSINIDA 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~ 171 (184)
+|+|++++.++.....++..+.......+.|+++++||+|+.+.....+....+...... ...++++++||++|+|+++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 999999988888888777777665555679999999999987655555555554433222 2346789999999999999
Q ss_pred HHHHHHHHhhh
Q 030000 172 VIDWLIKHSKT 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
++++|.+.+.+
T Consensus 161 l~~~l~~~l~~ 171 (183)
T cd04152 161 GLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 31
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.2e-33 Score=188.02 Aligned_cols=160 Identities=26% Similarity=0.404 Sum_probs=128.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe---ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT---KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~---~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+||+++|++|+|||||++++.++.+...+.+|.+..+. .+. ...+.+.+||+||++++...+..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999999988888888885443 333 3468899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcC---CCCCCCcEEEEEeCCCccc--ccCHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 95 VDAADRDSVPIARSELHELLMK---PSLSGIPLLVLGNKIDKSE--ALSKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~iivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
||+++++++..+..|+..+... ....++|+++|+||+|+.. ....++..+..... ....++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCH
Confidence 9999999999998887766432 2236789999999999963 23333333322211 1146999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030000 170 DAVIDWLIKHSKTA 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
+++|+++.+.+.+.
T Consensus 157 ~e~f~~l~~~l~~~ 170 (201)
T cd04107 157 EEAMRFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
No 32
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=188.12 Aligned_cols=161 Identities=20% Similarity=0.307 Sum_probs=130.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...+||+++|++|+|||||++++..+.+...+.+|.+..+.. ++...+.+++|||||++++...+..++++++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 346999999999999999999999998887788887755542 44556789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|+++++++.....|...+.+.....++|+++++||+|+.+.. ...+..+... ....+++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK-----SFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH-----HhCCEEEEeeCCCCCCHHH
Confidence 99999999999999988888766555689999999999985432 2111111111 1134799999999999999
Q ss_pred HHHHHHHHhhh
Q 030000 172 VIDWLIKHSKT 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+++.+.+.+
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 33
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.8e-33 Score=183.39 Aligned_cols=158 Identities=20% Similarity=0.331 Sum_probs=127.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
++||+++|.+|+|||||+++++.+.+...+.+|.+..+. . +....+.+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 479999999999999999999988887777777764332 2 3344577889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|.++..+++....|+..+.......+.|+++++||+|+..... .+.. +.+. .....+++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNLA----RQWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHHH----HHhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999999988887665567899999999999965322 1211 1111 0112479999999999999999
Q ss_pred HHHHHHhh
Q 030000 174 DWLIKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
+++.+.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 34
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=4.8e-33 Score=182.02 Aligned_cols=155 Identities=35% Similarity=0.629 Sum_probs=133.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD 101 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 101 (184)
|+++|++|+|||||++++.++.+...+.+|.+.....+...++.+.+||+||++++...+..+++++|++++|+|++++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 78999999999999999999888888889988877778888999999999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc-CCCceeEEEeeecc------CCCHHHHHH
Q 030000 102 SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCKD------SINIDAVID 174 (184)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~i~~l~~ 174 (184)
++.....|+..+.... .++|+++|+||+|+.......++.+.++.... ....+.++++||++ ++|+.++|+
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 8988888888775442 58999999999999776666666666554444 34567889999988 999999999
Q ss_pred HHHH
Q 030000 175 WLIK 178 (184)
Q Consensus 175 ~i~~ 178 (184)
.++.
T Consensus 160 ~~~~ 163 (164)
T cd04162 160 QLIN 163 (164)
T ss_pred HHhc
Confidence 8764
No 35
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=3.1e-32 Score=182.51 Aligned_cols=163 Identities=33% Similarity=0.576 Sum_probs=137.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|++|||||||++++.++.+. .+.+|.+.....+...+..+.+||+||++++...+..++++++++++|+|
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 45799999999999999999999987764 56677777777788888999999999999999889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc-----------CCCceeEEEeeecc
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-----------TDREVCCYMISCKD 165 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~ 165 (184)
+++..++.....++..++......+.|+++++||+|+......++..+.++.... ....+++++|||++
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK 175 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence 9999889888888888876655567999999999999766666777776654221 12456799999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030000 166 SINIDAVIDWLIKHS 180 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~ 180 (184)
|+|++++|+|+.+.+
T Consensus 176 ~~gv~e~~~~l~~~~ 190 (190)
T cd00879 176 RQGYGEAFRWLSQYL 190 (190)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998753
No 36
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.4e-33 Score=183.53 Aligned_cols=158 Identities=20% Similarity=0.323 Sum_probs=125.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|||||||++++..+.+...+.+|.+..+ ..+ ....+.+.+||+||++++...+..++++++++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 37999999999999999999999888777777766332 223 344477889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
|++++.++.....|+..+.......++|+++++||+|+.+.... .+....+.. ....+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR----QWGCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999998888866555568999999999998653221 111111111 1125799999999999999999
Q ss_pred HHHHHh
Q 030000 175 WLIKHS 180 (184)
Q Consensus 175 ~i~~~~ 180 (184)
++.+.+
T Consensus 157 ~l~~~~ 162 (163)
T cd04136 157 DLVRQI 162 (163)
T ss_pred HHHHhc
Confidence 998765
No 37
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-34 Score=174.91 Aligned_cols=159 Identities=24% Similarity=0.385 Sum_probs=133.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-|||+++|+.|+|||+|++++..+-|++..+.|+|..+. ++++..+++++|||+|+++|++..+.+++.++++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 489999999999999999999999999999999995554 3556779999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
||++...+|+-+..|+.++-.+.+ .++--++|+||+|+.+. .++.++++.+........++++||++.+|++.+|.
T Consensus 87 ydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 999999999999999999876644 56777889999998654 33334444333334555689999999999999998
Q ss_pred HHHHHhh
Q 030000 175 WLIKHSK 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
.+.-.+.
T Consensus 163 ~~a~rli 169 (213)
T KOG0095|consen 163 DLACRLI 169 (213)
T ss_pred HHHHHHH
Confidence 8876553
No 38
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=7.2e-33 Score=187.73 Aligned_cols=160 Identities=24% Similarity=0.419 Sum_probs=127.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+||+++|.+|+|||||++++..+.+.. ..+|.+..+.......+.+.+||++|++.+...+..+++++|++|+|||+++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~ 79 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN 79 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCC
Confidence 589999999999999999999999874 5778887766666677889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc-------------------c--CH---HHHHHHhCCC------
Q 030000 100 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA-------------------L--SK---QALVDQLGLE------ 149 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-------------------~--~~---~~~~~~~~~~------ 149 (184)
+++|..+..|+..+... ...++|+++|+||+|+.+. . .. ..+.+.....
T Consensus 80 ~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~ 158 (220)
T cd04126 80 VQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDED 158 (220)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccccc
Confidence 99999999888877654 3357999999999998651 0 11 1222222100
Q ss_pred ccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 150 SITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.......++++|||++|.||+++|+.+++.+.
T Consensus 159 ~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 159 LSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 00012357999999999999999999998765
No 39
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=5e-33 Score=182.33 Aligned_cols=156 Identities=23% Similarity=0.441 Sum_probs=127.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe----ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||+++++.+.+...+.+|.+....... ...+.+.+||+||++.+......++..+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888788888876655432 34588999999999999888888999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
|++++.++..+..|+..+..... ++|+++|+||+|+.+.....+..+.. .....+++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQITFH-----RKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHHHHH-----HHcCCEEEEEeCCCCCChHHHHHH
Confidence 99999999999988888766543 89999999999997433222221111 123457999999999999999999
Q ss_pred HHHHhhh
Q 030000 176 LIKHSKT 182 (184)
Q Consensus 176 i~~~~~~ 182 (184)
+.+.+.+
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9988764
No 40
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4e-33 Score=184.25 Aligned_cols=156 Identities=17% Similarity=0.228 Sum_probs=123.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|+|||||++++..+.+...+.+|.+..+. .++...+.+.+|||+|++++......+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 379999999999999999999999998888888875543 23445688999999999999999999999999999999
Q ss_pred eCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCcccc--------------cCHHHHHHHhCCCccCCCce-eEE
Q 030000 96 DAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEA--------------LSKQALVDQLGLESITDREV-CCY 159 (184)
Q Consensus 96 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~ 159 (184)
|++++++|+.+ ..|...+.... ++.|+++|+||+|+.+. ...++. +.+ ....+. +++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~-~~~----a~~~~~~~~~ 153 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQG-CAI----AKQLGAEIYL 153 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHH-HHH----HHHhCCCEEE
Confidence 99999999996 67777665432 57999999999998541 111111 111 111232 699
Q ss_pred EeeeccCCC-HHHHHHHHHHHhh
Q 030000 160 MISCKDSIN-IDAVIDWLIKHSK 181 (184)
Q Consensus 160 ~~Sa~~~~~-i~~l~~~i~~~~~ 181 (184)
+|||++|+| |+++|+.+.....
T Consensus 154 E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 154 ECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred ECccCcCCcCHHHHHHHHHHHHh
Confidence 999999995 9999999988543
No 41
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.7e-33 Score=184.75 Aligned_cols=158 Identities=21% Similarity=0.301 Sum_probs=127.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|+|||||++++..+.+...+.+|.+..... ++...+.+.+||+||++++...+..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 3799999999999999999999999888877787755432 334457899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.++..+..|+..+... ..++.|+++|+||+|+..... .++..+... ...++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFAD-----ENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 9999999999999998876443 235789999999999965432 222222221 12457999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 42
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=5.4e-33 Score=181.62 Aligned_cols=157 Identities=18% Similarity=0.287 Sum_probs=125.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|+|||||++++.++.+...+.+|.+..+.. +....+.+.+||+||++++...+..++++++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 3799999999999999999999998877777777644322 3334467889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
|+++..++.....|+..+.+.....+.|+++|+||+|+.+... ..+..+... ....+++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK-----SYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH-----HhCCeEEEecCCCCCCHHHHHH
Confidence 9999999999988888877665556899999999999865322 222212111 1234699999999999999999
Q ss_pred HHHHHh
Q 030000 175 WLIKHS 180 (184)
Q Consensus 175 ~i~~~~ 180 (184)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998765
No 43
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=100.00 E-value=1.8e-32 Score=178.49 Aligned_cols=157 Identities=38% Similarity=0.714 Sum_probs=136.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 100 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
||+++|.+|||||||++++.++.+ ....+|.+.....+......+.+||+||++.+...+..+++++|++++|+|++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~ 79 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDR 79 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 689999999999999999998873 4567788888888888899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 101 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
.++.....++..+.......+.|+++++||+|+......++..+.++........++++++||++|.|++++|++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 80 ERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 899998888888877655678999999999999877666677776665444456778999999999999999999875
No 44
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.9e-32 Score=182.02 Aligned_cols=160 Identities=21% Similarity=0.364 Sum_probs=129.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee------------ecCEEEEEEEcCCccchhHhHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT------------KGNVTIKLWDLGGQRRFRTMWER 83 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~------------~~~~~~~~~d~~g~~~~~~~~~~ 83 (184)
..+||+++|++|||||||++++..+.+...+.+|.+..+.. +. ...+.+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999999988888888755532 22 23478999999999999999999
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEe
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMI 161 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++++|++++|+|+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++..+... ..+.+++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD-----KYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH-----HcCCeEEEE
Confidence 999999999999999999999999998877655444678999999999996532 2222211111 112469999
Q ss_pred eeccCCCHHHHHHHHHHHhhh
Q 030000 162 SCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
||++|.|++++|+++.+.+.+
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999987654
No 45
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.2e-32 Score=181.86 Aligned_cols=158 Identities=19% Similarity=0.213 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||++++..+.+...+.+|.+..+. .+. ...+.+++||++|++++...+..+++++|++|+|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 69999999999999999999999998888898876554 333 334889999999999999988889999999999999
Q ss_pred CCCCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCC---------cc-CCCceeEEEeeecc
Q 030000 97 AADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE---------SI-TDREVCCYMISCKD 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~Sa~~ 165 (184)
+++++++..+.. |...+... .+++|+++|+||+|+.......+........ .. ....+.++++||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999975 65555332 2579999999999986532211110000000 00 11235799999999
Q ss_pred CCCHHHHHHHHHHH
Q 030000 166 SINIDAVIDWLIKH 179 (184)
Q Consensus 166 ~~~i~~l~~~i~~~ 179 (184)
|.|++++|+.++..
T Consensus 160 g~~v~~~f~~~~~~ 173 (175)
T cd01874 160 QKGLKNVFDEAILA 173 (175)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999874
No 46
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=8.6e-33 Score=188.30 Aligned_cols=159 Identities=22% Similarity=0.374 Sum_probs=130.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe----ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|||||||+++++.+.+...+.+|.+....... ...+.+.+||++|++++...+..++++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56799999999999999999999999998888899886655432 34589999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|||++++.++..+..|+..+... ..+.|+++|+||+|+.......+..+ + .....++++++||++|.|++++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~~-~----~~~~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-F----HRKKNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHHH-H----HHhcCCEEEEcCCCCCCCHHHH
Confidence 999999999999999998887654 25799999999999864322111111 1 1123457999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+.+
T Consensus 164 f~~l~~~~~~ 173 (219)
T PLN03071 164 FLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHc
Confidence 9999988754
No 47
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.1e-32 Score=187.78 Aligned_cols=158 Identities=21% Similarity=0.253 Sum_probs=125.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
..+||+++|++|+|||||+.++..+.|...+.+|.+..+.. +....+.+.+|||+|+++|......+++++|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 46899999999999999999999999998888998755542 334568899999999999999999999999999999
Q ss_pred EeCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCcccc--------------cCHHHHHHHhCCCccCCCce-eE
Q 030000 95 VDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEA--------------LSKQALVDQLGLESITDREV-CC 158 (184)
Q Consensus 95 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~-~~ 158 (184)
||++++.+|... ..|+..+.... ++.|+++|+||+|+.+. ...++. +.+ ....++ .+
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~-~~~----a~~~~~~~~ 164 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQG-CAL----AKQLGAEVY 164 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHH-HHH----HHHcCCCEE
Confidence 999999999984 67777665432 47899999999998542 111111 111 112233 58
Q ss_pred EEeeeccCC-CHHHHHHHHHHHhhh
Q 030000 159 YMISCKDSI-NIDAVIDWLIKHSKT 182 (184)
Q Consensus 159 ~~~Sa~~~~-~i~~l~~~i~~~~~~ 182 (184)
++|||++|+ ||+++|+.+...+.+
T Consensus 165 ~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 165 LECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred EEccCCcCCcCHHHHHHHHHHHHHH
Confidence 999999998 899999999877644
No 48
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=5e-33 Score=182.89 Aligned_cols=158 Identities=23% Similarity=0.364 Sum_probs=126.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
||+++|++|||||||++++..+.+...+.+|.+..+.. +......+++||+||++++...+..+++++|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988888998865532 23345789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH---HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK---QALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
+++++++.....|+..+.+.......|+++|+||+|+.+.... ++....+. .....+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA----AEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH----HHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999998888766544456789999999998654221 11111111 1112468999999999999999
Q ss_pred HHHHHHhhh
Q 030000 174 DWLIKHSKT 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+.+.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999987643
No 49
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=100.00 E-value=2.9e-32 Score=179.13 Aligned_cols=158 Identities=34% Similarity=0.664 Sum_probs=129.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC------CCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGG------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+|+++|++|+|||||++++.... ....+.+|.+.....+...+..+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 58999999999999999997532 233456788877777888899999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc--cCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES--ITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+.+++++.....++..+.......++|+++++||+|+.......+..+.+.... .....++++++||++|+|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888888888888877655556899999999999977655555555544321 2234568999999999999999
Q ss_pred HHHHHH
Q 030000 173 IDWLIK 178 (184)
Q Consensus 173 ~~~i~~ 178 (184)
++||.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999975
No 50
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.3e-32 Score=182.60 Aligned_cols=160 Identities=25% Similarity=0.437 Sum_probs=124.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|+.|+|||||++++..+.+...+.+|.+..+. .+. ...+.+.+||++|++++...+..+++++|++++|+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888899986553 343 34478999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc---CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
|++++.++..+..|+..+.... ....| ++|+||+|+.... ......+.. .......+.+++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~-~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQA-RKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHH-HHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999888775542 24566 5789999985321 111111110 0011122357999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+..
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 51
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=2.8e-32 Score=178.81 Aligned_cols=157 Identities=23% Similarity=0.403 Sum_probs=126.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.++.+...+.+|.+..+. .+. ...+.+.+||+||++++...+..++++++++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988877888875443 232 33478999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|.++++++..+..|+..+... .....|+++|+||+|+.+... .++..+... ..+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLAD-----QLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHH
Confidence 999999999999888876443 335789999999999965432 122111111 112369999999999999999
Q ss_pred HHHHHHhhh
Q 030000 174 DWLIKHSKT 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+++.+.+..
T Consensus 156 ~~l~~~~~~ 164 (165)
T cd01865 156 ERLVDIICD 164 (165)
T ss_pred HHHHHHHHh
Confidence 999988765
No 52
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2.6e-32 Score=179.40 Aligned_cols=157 Identities=20% Similarity=0.330 Sum_probs=127.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||+++++++.+...+.+|.+..+. .+ ....+.+++||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888888886543 23 344688999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCC----CCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 96 DAADRDSVPIARSELHELLMKPSL----SGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
|++++.++.....|+..+.+.... .+.|+++|+||+|+.+.. ..++...... ....+++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-----SKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-----HcCCeEEEEECCCCCCH
Confidence 999999999999988888665442 579999999999996422 2222222111 12246999999999999
Q ss_pred HHHHHHHHHHhh
Q 030000 170 DAVIDWLIKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~~~ 181 (184)
+++++++.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 53
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.5e-32 Score=179.90 Aligned_cols=158 Identities=22% Similarity=0.332 Sum_probs=125.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|||||||++++.++.+...+.+|.+..+. . +....+.+.+||+||++++...+..++++++++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999998887777676653322 2 33345788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+++++++.....|...+.......+.|+++++||+|+.... ..+...+.... ...+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ-----WGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH-----cCCEEEEeecCCCCCHHHHHH
Confidence 99999999999888877665555679999999999986532 22222111111 124799999999999999999
Q ss_pred HHHHHhhh
Q 030000 175 WLIKHSKT 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99988764
No 54
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=4.5e-32 Score=177.03 Aligned_cols=157 Identities=28% Similarity=0.558 Sum_probs=128.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEee-cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+|+++|++|||||||++++.++.+.. ..+|.+.....+.. ..+.+.+||+||+..+...+..++.++|++++|+|+.+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~ 79 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSD 79 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc
Confidence 58999999999999999999888753 46777766655553 45789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccC-CCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 100 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIT-DREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
+.++.....++..++......+.|+++++||+|+......+++...+...... ...++++++||++|+|+++++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 80 EARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 88888888888888765544689999999999997655556666555433222 24567999999999999999999864
No 55
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-33 Score=169.10 Aligned_cols=156 Identities=25% Similarity=0.466 Sum_probs=135.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---Ee-ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VT-KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+|++++|+..+|||||+.++.+..|......|.|+.+.. ++ .+.+++++|||+|+++++...-.++++++++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 4799999999999999999999999999999999977654 22 3458899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-----CHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
||+++.++|.....|...+. .....+.|+|+++||||+.++. ....+.+.++. .+|++||+.+.|+
T Consensus 101 yDitNeeSf~svqdw~tqIk-tysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf--------efFEtSaK~NinV 171 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWITQIK-TYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF--------EFFETSAKENINV 171 (193)
T ss_pred EecCCHHHHHHHHHHHHHhe-eeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh--------HHhhhcccccccH
Confidence 99999999999999988774 4466899999999999996643 23556666665 4999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030000 170 DAVIDWLIKHSKTA 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
.++|+.+.+.++.+
T Consensus 172 k~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 172 KQVFERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
No 56
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.7e-32 Score=179.02 Aligned_cols=155 Identities=23% Similarity=0.365 Sum_probs=124.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++..+.+...+.+|.+.... .+.. ..+.+.+||++|++++...+..+++++|++++|+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888886543 3333 3478899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
|+++++++..+..|+..+... ...+.|+++|+||.|+...... .+....+.. ....+++++||++|.|++++|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAK----EYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999988877544 2357999999999998654322 111111111 1124689999999999999999
Q ss_pred HHHHH
Q 030000 175 WLIKH 179 (184)
Q Consensus 175 ~i~~~ 179 (184)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99875
No 57
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=5.6e-33 Score=181.95 Aligned_cols=158 Identities=22% Similarity=0.307 Sum_probs=126.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|+|||||++++.++.+.....+|.+..+.. +....+.+.+||+||++++...+..+++++|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888877766776643332 3344477899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|++++.++.....|+..+.+.....+.|+++++||+|+..... .++..+... ...++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-----KLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-----HcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999999888877655556899999999999865432 222111111 123479999999999999999
Q ss_pred HHHHHHhh
Q 030000 174 DWLIKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
+++.+.++
T Consensus 157 ~~l~~~~~ 164 (164)
T cd04145 157 HDLVRVIR 164 (164)
T ss_pred HHHHHhhC
Confidence 99988763
No 58
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.4e-32 Score=179.96 Aligned_cols=158 Identities=15% Similarity=0.289 Sum_probs=125.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
++||+++|.+|+|||||++++..+.+...+.+|.+..+ ..+ +...+.+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999999998877777765222 223 344567889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH-HHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
|++++.++.....|+..+.......++|+++|+||+|+....... .....+.. ....+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE----EWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH----HhCCEEEEecCCCCCCHHHHHH
Confidence 999999999999988887665545689999999999986532211 11111111 1124789999999999999999
Q ss_pred HHHHHh
Q 030000 175 WLIKHS 180 (184)
Q Consensus 175 ~i~~~~ 180 (184)
++.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998765
No 59
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2.7e-32 Score=179.98 Aligned_cols=159 Identities=20% Similarity=0.251 Sum_probs=120.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|||||||+.++..+.+...+.+|.+..+. .++...+.+.+|||+|++++...+..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 379999999999999999999999998888888764432 23445588999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCC--------Ccc-CCCceeEEEeeec
Q 030000 96 DAADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGL--------ESI-TDREVCCYMISCK 164 (184)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~--------~~~-~~~~~~~~~~Sa~ 164 (184)
|++++++|..+.. |+..+... .++.|+++|+||+|+.+... .+...+.... ... .....++++|||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999864 55544332 25799999999999854221 1111110000 000 0112479999999
Q ss_pred cCCCHHHHHHHHHHH
Q 030000 165 DSINIDAVIDWLIKH 179 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~ 179 (184)
+|+|++++|+.+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
No 60
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=100.00 E-value=1.3e-31 Score=177.02 Aligned_cols=161 Identities=33% Similarity=0.647 Sum_probs=137.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|++|||||||++++.+..+. ...+|.+.....+...+..+.+||+||+..+...+..++++++++++|+|
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D 90 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVID 90 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEe
Confidence 45799999999999999999999876654 35677787777777788999999999999988888899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
+.+..++.....++...+......++|+++++||+|+.+....+++.+.++......+.++++++||++|+|++++++||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 91 SADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 99888888888887777665555679999999999997776677777777766666666778999999999999999999
Q ss_pred HH
Q 030000 177 IK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 171 ~~ 172 (173)
T cd04155 171 CK 172 (173)
T ss_pred hc
Confidence 75
No 61
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=100.00 E-value=1e-31 Score=174.87 Aligned_cols=157 Identities=71% Similarity=1.180 Sum_probs=135.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD 101 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 101 (184)
|+++|++|||||||++++.+..+.....+|.+.....+......+.+||+||++.+...+..+++.+|++++|+|+++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 78999999999999999999999888889999888888778899999999999999999999999999999999999888
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 102 SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
++.....++..+.......++|+++++||+|+.+.....+..+.+..........+++++|+++|.|++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88877777777766555568999999999998776655566666655444455678999999999999999999975
No 62
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-33 Score=180.51 Aligned_cols=155 Identities=25% Similarity=0.415 Sum_probs=134.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.-|||+++|++++|||-|+.++..++|.....+|+|+.+.+ ++.+.++.+||||+||++|+.....+++.+.++++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 45999999999999999999999999999999999977765 55677999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc-----cCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA-----LSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|||++...+|++...|+.++..+.. .++++++|+||+||... ++.+.+.+..++ .++++||+++.|
T Consensus 93 VYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l--------~f~EtSAl~~tN 163 (222)
T KOG0087|consen 93 VYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGL--------FFLETSALDATN 163 (222)
T ss_pred EEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhccccchhhhHhHHHhcCc--------eEEEeccccccc
Confidence 9999999999999999999977655 68999999999999652 223334443333 599999999999
Q ss_pred HHHHHHHHHHHhh
Q 030000 169 IDAVIDWLIKHSK 181 (184)
Q Consensus 169 i~~l~~~i~~~~~ 181 (184)
+++.|+.+...+-
T Consensus 164 Ve~aF~~~l~~I~ 176 (222)
T KOG0087|consen 164 VEKAFERVLTEIY 176 (222)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877653
No 63
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=5.7e-32 Score=177.66 Aligned_cols=158 Identities=26% Similarity=0.417 Sum_probs=128.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|+|||||++++.++.+...+.+|.+..+. .+. ...+.+.+||+||++++...+..+++++|++++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 589999999999999999999999998888888875443 333 3447899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+++++++..+..|+..+... ...+.|+++++||+|+.+.. ..++..+... ....+++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALAD-----EYGIKFLETSAKANINVEEA 156 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999888877554 33679999999999997532 2222222221 12347999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+..
T Consensus 157 ~~~i~~~~~~ 166 (167)
T cd01867 157 FFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 64
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.7e-32 Score=183.52 Aligned_cols=158 Identities=18% Similarity=0.272 Sum_probs=124.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 97 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
||+++|.+|+|||||++++..+.+...+.+|.+..+.. +....+.+.+||+||++++...+..+++++|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999998887777877744322 334456799999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCC--CCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 98 ADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
++..++..+..|+..+..... ..++|+++|+||+|+..... ..+..+.. ...+++++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALA-----RRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHH-----HHhCCEEEEecCCCCCCHHHHH
Confidence 999999999988877754332 35789999999999864322 11111111 1123469999999999999999
Q ss_pred HHHHHHhhhc
Q 030000 174 DWLIKHSKTA 183 (184)
Q Consensus 174 ~~i~~~~~~~ 183 (184)
+++.+.+..+
T Consensus 156 ~~l~~~l~~~ 165 (190)
T cd04144 156 YTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHh
Confidence 9999887643
No 65
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=7.3e-32 Score=176.10 Aligned_cols=157 Identities=25% Similarity=0.392 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++..+.+.....++.+..... ++...+.+.+||++|++++...+..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999998887777766544322 3445678999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
|++++.++.....|+..+... .++.|+++++||+|+.... ..+..+ +. ....++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKFN-FA----EKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999888888777543 2478999999999984321 111111 11 112357999999999999999999
Q ss_pred HHHHhhhcC
Q 030000 176 LIKHSKTAK 184 (184)
Q Consensus 176 i~~~~~~~~ 184 (184)
+.+.+.+.|
T Consensus 153 l~~~~~~~~ 161 (161)
T cd04124 153 AIKLAVSYK 161 (161)
T ss_pred HHHHHHhcC
Confidence 999887765
No 66
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=8.7e-32 Score=176.66 Aligned_cols=158 Identities=25% Similarity=0.420 Sum_probs=126.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|||||||++++.++.+...+.+|.+.... .+. ...+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 479999999999999999999998887777777774433 333 3357899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+++++++..+..|+..+.... ..+.|+++++||+|+.+.... ++...... ...++++++||++|+|+.++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFAD-----ELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHH-----HcCCeEEEEECCCCcCHHHH
Confidence 99999999999999888775442 357899999999998654321 22222111 12347999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 67
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.3e-32 Score=183.96 Aligned_cols=160 Identities=24% Similarity=0.383 Sum_probs=128.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee---ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT---KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~---~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+||+++|++|+|||||++++.++.+...+.+|.+..... +. ...+.+++||+||++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 4899999999999999999999999887777887755432 32 234789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
|||++++.++..+..|+..+.........|+++++||+|+.+.... .+..+.+. ...+.+++++||++|+|++++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sak~g~~v~e~ 157 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA----KDLGMKYIETSARTGDNVEEA 157 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH----HHhCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999988876555456889999999998653221 11111111 112257999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|++|.+.+.+
T Consensus 158 f~~l~~~~~~ 167 (211)
T cd04111 158 FELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 68
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3.8e-32 Score=181.67 Aligned_cols=161 Identities=22% Similarity=0.267 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.||+++|++|+|||||++++..+.+...+.+|.+..+.. ++...+.+++||++|++++...+..++++++++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 389999999999999999999999988778887755432 33345789999999999998888889999999999999
Q ss_pred CCCCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhC---------CCcc-CCCceeEEEeeecc
Q 030000 97 AADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG---------LESI-TDREVCCYMISCKD 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~Sa~~ 165 (184)
++++.+|..... |+..+... ..+.|+++|+||+|+.......+...... .... ....++++++||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999998864 66555433 25799999999999965433221111110 0000 11235799999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030000 166 SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~ 182 (184)
|.|++++|+++.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988764
No 69
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=6e-32 Score=183.32 Aligned_cols=162 Identities=18% Similarity=0.268 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+|+|++|+|||||+.++..+.+...+.+|.+..+. .++...+.+.+|||+|++.|......+++++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 79999999999999999999999999888899886554 234456889999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHH--------HhCCCccCCCc-eeEEEeeeccC
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVD--------QLGLESITDRE-VCCYMISCKDS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~~~Sa~~~ 166 (184)
++++++|+.+..+|...+... .+++|+++|+||+|+.+.... +...+ ..+.......+ .+|++|||+++
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~ 160 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS 160 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 999999999965444443332 367999999999998653110 10000 00000011123 37999999999
Q ss_pred CC-HHHHHHHHHHHhhh
Q 030000 167 IN-IDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~-i~~l~~~i~~~~~~ 182 (184)
++ |+++|+.+......
T Consensus 161 ~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 161 ERSVRDVFHVATVASLG 177 (222)
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 85 99999998876543
No 70
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=3e-32 Score=176.97 Aligned_cols=152 Identities=22% Similarity=0.326 Sum_probs=115.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 97 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+||+++|+.|+|||||+.++..+.+.....++.+.....+... .+.+.+||++|++. ..+++++|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 4899999999999999999998888766656555433444444 47799999999975 2456789999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--cCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 98 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+++.+|+....|+..+.......++|+++|+||.|+... ... .+..+.+.. ....+.+++|||++|.||+++|+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~---~~~~~~~~e~SAk~~~~i~~~f~ 152 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA---DMKRCSYYETCATYGLNVERVFQ 152 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH---HhCCCcEEEEecCCCCCHHHHHH
Confidence 999999999999888876655567999999999998431 111 111111111 11235799999999999999999
Q ss_pred HHHHH
Q 030000 175 WLIKH 179 (184)
Q Consensus 175 ~i~~~ 179 (184)
.+.+.
T Consensus 153 ~~~~~ 157 (158)
T cd04103 153 EAAQK 157 (158)
T ss_pred HHHhh
Confidence 99865
No 71
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1e-31 Score=177.02 Aligned_cols=160 Identities=25% Similarity=0.394 Sum_probs=127.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..+||+++|++|+|||||++++..+.+...+.+|.+.... . ++...+.+.+||+||++++...+..+++++|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 35689999999999999999999999988877788775543 2 3445578899999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|+++++++..+..|...+..... ..++|+++++||+|+.... ..++..+.... ....+++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE----NGDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH----CCCCeEEEEECCCCCC
Confidence 99999999999999888887755432 3578999999999986422 22333222211 1123689999999999
Q ss_pred HHHHHHHHHHHh
Q 030000 169 IDAVIDWLIKHS 180 (184)
Q Consensus 169 i~~l~~~i~~~~ 180 (184)
+.++|+++.+.+
T Consensus 159 v~~~~~~~~~~~ 170 (170)
T cd04116 159 VAAAFEEAVRRV 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 72
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.6e-31 Score=181.99 Aligned_cols=158 Identities=22% Similarity=0.330 Sum_probs=126.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEee---cCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+||+++|++|+|||||++++.++.+...+.+|.+.... .+.. ..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999999998888889885543 2332 358899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCC--CCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+++++++..+..|+..+..... ..+.|+++|+||+|+..... .++.. .+.. ....+++++||++|+|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~-~~~~----~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHA-RFAQ----ANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHH-HHHH----HcCCEEEEEECCCCCCHH
Confidence 999999999999988887765432 24578999999999964321 11111 1111 112468999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|+++.+.+..
T Consensus 156 ~lf~~l~~~l~~ 167 (215)
T cd04109 156 LLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 73
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2e-31 Score=174.76 Aligned_cols=157 Identities=26% Similarity=0.390 Sum_probs=124.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|+|||||++++..+.+...+.+|.+.. ...+...+ +.+.+||+||++++...+..+++++|++++|
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 5899999999999999999999888877777777643 33444444 6889999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.++..+..|+..+... ...++|+++|+||+|+.+... .+...+.... .....++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~~ 157 (165)
T cd01864 83 YDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEK----NGMLAVLETSAKESQNVEEA 157 (165)
T ss_pred EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHH----cCCcEEEEEECCCCCCHHHH
Confidence 9999999999998888877543 346799999999999975432 1221111111 11235899999999999999
Q ss_pred HHHHHHHh
Q 030000 173 IDWLIKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
++++.+.+
T Consensus 158 ~~~l~~~l 165 (165)
T cd01864 158 FLLMATEL 165 (165)
T ss_pred HHHHHHhC
Confidence 99998753
No 74
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-32 Score=167.75 Aligned_cols=158 Identities=22% Similarity=0.346 Sum_probs=129.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+|++++|+.|+|||+|+.++....+......|+|+.+.. ++ .+.++++||||+||++|++....+++.+.+.++||
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVY 89 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 89 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEE
Confidence 899999999999999999999999999999999977654 33 45588999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
|+++.++|..+..|+..... ...+++-+++++||.|+.+..+..- .+ .......++..++++|+++|+|++|.|-.
T Consensus 90 D~TsrdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~R~Vtf-lE--As~FaqEnel~flETSa~TGeNVEEaFl~ 165 (214)
T KOG0086|consen 90 DITSRDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPEREVTF-LE--ASRFAQENELMFLETSALTGENVEEAFLK 165 (214)
T ss_pred eccchhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChhhhhhH-HH--HHhhhcccceeeeeecccccccHHHHHHH
Confidence 99999999999999998744 4457888999999999966543311 11 11122233446899999999999999977
Q ss_pred HHHHhh
Q 030000 176 LIKHSK 181 (184)
Q Consensus 176 i~~~~~ 181 (184)
....+.
T Consensus 166 c~~tIl 171 (214)
T KOG0086|consen 166 CARTIL 171 (214)
T ss_pred HHHHHH
Confidence 666554
No 75
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1e-32 Score=168.39 Aligned_cols=154 Identities=28% Similarity=0.489 Sum_probs=131.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-++.+|+|++|+|||+|+.++..+.|..++..|+|.++.. +++..++++|||++|+++|+.+...+++..+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 3678899999999999999999999999999999966543 556679999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-----CHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
||.++.+||.+..+|+.++.+... .+|-++|+||.|..+.. +...+....+ +.+|++|+++++|+
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncd--sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg--------ie~FETSaKe~~Nv 157 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCD--SVPKVLVGNKNDDPERRVVDTEDARAFALQMG--------IELFETSAKENENV 157 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCc--cccceecccCCCCccceeeehHHHHHHHHhcC--------chheehhhhhcccc
Confidence 999999999999999999966544 78999999999987632 2233333333 35899999999999
Q ss_pred HHHHHHHHHHhhh
Q 030000 170 DAVIDWLIKHSKT 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+.+|.-|.+.+.+
T Consensus 158 E~mF~cit~qvl~ 170 (198)
T KOG0079|consen 158 EAMFHCITKQVLQ 170 (198)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999887654
No 76
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.1e-31 Score=180.80 Aligned_cols=158 Identities=25% Similarity=0.441 Sum_probs=127.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|++|+|||||++++.++.+...+.+|.+..+. .+. ...+.+.+||+||++.+...+..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 4689999999999999999999999888778888875543 333 334678999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|+++++++..+..|+..+... ....|+++|+||+|+.+... .++..+... ....+++++||++|.||++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAG-----QMGISLFETSAKENINVEE 157 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECCCCcCHHH
Confidence 99999999999999888877543 25789999999999875432 222222211 1125799999999999999
Q ss_pred HHHHHHHHhhh
Q 030000 172 VIDWLIKHSKT 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+++.+.+..
T Consensus 158 lf~~l~~~~~~ 168 (199)
T cd04110 158 MFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 77
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.7e-32 Score=178.86 Aligned_cols=156 Identities=21% Similarity=0.296 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||+++++++.+...+.+|.+..+.. .....+.+.+||+||++++......+++.++++++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 799999999999999999999999887777777644432 33455789999999999999888889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcC--CCCCCCcEEEEEeCCCcccccCHH-HHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 97 AADRDSVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
++++.++.....|+..+... ....++|+++|+||+|+.+..... +...... .....+++++||++|+|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACA----TEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHH----HHhCCcEEEeecCCCCCHHHHH
Confidence 99999999988887655332 223579999999999996532211 1111111 1123468999999999999999
Q ss_pred HHHHHH
Q 030000 174 DWLIKH 179 (184)
Q Consensus 174 ~~i~~~ 179 (184)
++|.+.
T Consensus 158 ~~l~~~ 163 (165)
T cd04140 158 QELLNL 163 (165)
T ss_pred HHHHhc
Confidence 999864
No 78
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-31 Score=160.49 Aligned_cols=173 Identities=35% Similarity=0.626 Sum_probs=159.9
Q ss_pred HHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
..+.+++.+++++|+.+|..++||||++..+.-+.. ....+|.|++...+..++..+++||.+|+...+..|..|+...
T Consensus 7 k~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gt 85 (180)
T KOG0071|consen 7 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGT 85 (180)
T ss_pred HHHHHHhCcccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCC
Confidence 445556788999999999999999999999975543 4667899999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
.++|+|+|+.+.+.++..+..+..++........|+++..||.|+.....++++.+.+.+...+.+.+.+.++|+.+|+|
T Consensus 86 qglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdg 165 (180)
T KOG0071|consen 86 QGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDG 165 (180)
T ss_pred ceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchh
Confidence 99999999999999999999999999998888999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
..+-+.|+...++.
T Consensus 166 L~eglswlsnn~~~ 179 (180)
T KOG0071|consen 166 LKEGLSWLSNNLKE 179 (180)
T ss_pred HHHHHHHHHhhccC
Confidence 99999999987653
No 79
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.6e-31 Score=175.96 Aligned_cols=159 Identities=28% Similarity=0.451 Sum_probs=126.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EE--eecCEEEEEEEcCCccchh-HhHHhhccCCCEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFR-TMWERYCRGVSAILY 93 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~i~ 93 (184)
.+||+++|++|+|||||+++++.+.+...+.+|.+.... .+ ....+.+.+||+||++++. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 479999999999999999999999888777777775443 23 3445889999999999887 467888999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeecc---CCCH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKD---SINI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i 169 (184)
|+|++++.++.....|+..+.......++|+++|+||+|+...... .+..+.+.. ....+++++||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD----AHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH----HcCCcEEEEeccCCcCCCCH
Confidence 9999999999999998887766655568999999999998654321 122222211 1235799999999 8999
Q ss_pred HHHHHHHHHHhh
Q 030000 170 DAVIDWLIKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~~~ 181 (184)
.++|..+.+.++
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 80
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.1e-31 Score=178.00 Aligned_cols=157 Identities=20% Similarity=0.281 Sum_probs=121.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEe---ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT---KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~---~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.++.+...+.+|.+..+. .+. ...+.+.+|||||++++...+..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 48999999999999999999999998888888775543 233 33578999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCccccc------CHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 96 DAADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEAL------SKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++.+++.... |+..+... .++.|+++|+||+|+.... ...+..+.... ....+++++||++|.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK----QGAFAYLECSAKTMEN 154 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHH----cCCcEEEEccCCCCCC
Confidence 9999999998865 55444322 2579999999999986532 11111111110 1112689999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
++++|+.+.+.+..
T Consensus 155 v~~~f~~l~~~~~~ 168 (187)
T cd04132 155 VEEVFDTAIEEALK 168 (187)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988765
No 81
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5.6e-32 Score=167.85 Aligned_cols=156 Identities=26% Similarity=0.429 Sum_probs=132.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee---ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT---KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~---~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
-+++++|+|++-+|||||+..+..+++..-..||+|.++.. ++ +..+++++|||+||++|++....++++.-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 46899999999999999999999999999999999976643 22 44588999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCccccc-----CHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+|||++++++|+....|+.+...... ..++-+.+|++|+|+.... +.+++....+ ..++++|+++|
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg--------M~FVETSak~g 158 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG--------MAFVETSAKNG 158 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcC--------ceEEEecccCC
Confidence 99999999999999999998866655 4456677899999997532 2344444444 45999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 030000 167 INIDAVIDWLIKHSK 181 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~ 181 (184)
.|+++.|..+.+.+.
T Consensus 159 ~NVeEAF~mlaqeIf 173 (213)
T KOG0091|consen 159 CNVEEAFDMLAQEIF 173 (213)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999999888764
No 82
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.6e-31 Score=174.62 Aligned_cols=155 Identities=22% Similarity=0.336 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.++.+.....++.+..+. .++...+.+++||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777777764443 23344578999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|++++.++..+..|+..+... ..+++|+++++||+|+..... .++....... ..++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQE-----NGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHHH
Confidence 999999999998888766433 346899999999999965322 2222222211 12579999999999999999
Q ss_pred HHHHHHh
Q 030000 174 DWLIKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+++.+.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 83
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=4.1e-31 Score=172.78 Aligned_cols=153 Identities=23% Similarity=0.435 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee----ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT----KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~----~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+||+++|++|+|||||++++..+.+...+.+|.+..+.. +. ...+.+.+||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998887778888765532 22 345889999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|+++++++..+..|...+... ..++|+++|+||+|+..... .++..+.... ..++++++|+++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKR-----LQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHH-----cCCeEEEEECCCCCCHHH
Confidence 99999999999998888776432 25799999999999865332 2222221111 123699999999999999
Q ss_pred HHHHHHHH
Q 030000 172 VIDWLIKH 179 (184)
Q Consensus 172 l~~~i~~~ 179 (184)
+++++.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99999865
No 84
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.6e-31 Score=177.26 Aligned_cols=158 Identities=27% Similarity=0.436 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+||+++|++|||||||++++..+.+.. .+.+|.+..+.. +....+.+++||+||++++...+..+++++|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888753 556676644432 334457899999999999999899999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+++..++.....|+..+... ...++|+++|+||+|+.... ..++.. .+.. ....+++++||++|+|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~-~l~~----~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGE-RLAK----EYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHH-HHHH----HcCCeEEEEeCCCCCCHHHH
Confidence 9999999999998888777554 33578999999999996432 112211 1111 11247999999999999999
Q ss_pred HHHHHHHhhhc
Q 030000 173 IDWLIKHSKTA 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
|++|.+.+...
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 85
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=3.3e-31 Score=177.53 Aligned_cols=151 Identities=22% Similarity=0.419 Sum_probs=123.3
Q ss_pred EcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC
Q 030000 25 IGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 100 (184)
Q Consensus 25 ~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
+|.+|||||||+++++.+.+...+.+|.+...... +...+.+.+||++|++++..++..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 59999999999999999988888888988665432 23468899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 101 DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
.++..+..|+..+.+.. .++|+++|+||+|+.......+..+ + .....+.+++|||++|.||.++|+++.+.+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~-~----~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSIT-F----HRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHH-H----HHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999998888776543 5799999999999854321111111 1 122356799999999999999999999877
Q ss_pred hh
Q 030000 181 KT 182 (184)
Q Consensus 181 ~~ 182 (184)
..
T Consensus 154 ~~ 155 (200)
T smart00176 154 IG 155 (200)
T ss_pred Hh
Confidence 54
No 86
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=5.3e-31 Score=176.17 Aligned_cols=159 Identities=23% Similarity=0.393 Sum_probs=125.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.++.+...+.+|.+..+. .+ ....+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988777788774443 23 334578899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
|+++++++..+..|+..+.... ..+.|+++++||+|+.+.... .+....+. ....++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC----DSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999888775443 246899999999998753321 11111111 11233699999999999999999
Q ss_pred HHHHHhhhc
Q 030000 175 WLIKHSKTA 183 (184)
Q Consensus 175 ~i~~~~~~~ 183 (184)
++.+.+.++
T Consensus 156 ~l~~~~~~~ 164 (188)
T cd04125 156 LLVKLIIKR 164 (188)
T ss_pred HHHHHHHHH
Confidence 999887653
No 87
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.98 E-value=6.9e-31 Score=181.26 Aligned_cols=157 Identities=19% Similarity=0.324 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccce-eEEE--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGF-NMRK--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~-~~~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||+++++.+.+...+.+|.+. .... +....+.+.+|||+|++.+......++.++|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999998777787762 2223 33445889999999999998888888899999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcC--------CCCCCCcEEEEEeCCCccc--ccCHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 97 AADRDSVPIARSELHELLMK--------PSLSGIPLLVLGNKIDKSE--ALSKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+++.++|+.+..|+..+... ....++|+++|+||+|+.. ....++..+.... ...+.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence 99999999999888877543 1235799999999999964 2233444444332 12457999999999
Q ss_pred CCHHHHHHHHHHHh
Q 030000 167 INIDAVIDWLIKHS 180 (184)
Q Consensus 167 ~~i~~l~~~i~~~~ 180 (184)
.|++++|++|.+..
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999865
No 88
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.98 E-value=9.6e-31 Score=171.56 Aligned_cols=156 Identities=22% Similarity=0.362 Sum_probs=124.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|||||||++++.++.+...+.+|.+..+. .+... .+.+.+||+||++++...+..++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999999888777777775443 33333 36789999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.++..+..|+..+.... ..++|+++|+||+|+.... ..++...... ....+++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE-----KNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 99999999999998888765543 3468999999999986532 2222222221 12357999999999999999
Q ss_pred HHHHHHHh
Q 030000 173 IDWLIKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
++++.+.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
No 89
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=7.3e-31 Score=172.50 Aligned_cols=156 Identities=18% Similarity=0.217 Sum_probs=123.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEE--EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
++.+||+++|.+|+|||||+++++++.+. ..+.+|.+..+. .+ ....+.+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999987 778888775432 23 34447889999999999988888889999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-----CHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
++|+|++++.++.....|+..+.. ..++|+++|+||+|+.+.. ..+++.+.++.. .++++||++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccC
Confidence 999999999888888777765422 2479999999999986432 223333333221 3589999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030000 167 INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~ 182 (184)
.|++++|+.+.+.+..
T Consensus 152 ~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 152 DSSNELFTKLATAAQY 167 (169)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 9999999999987754
No 90
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.98 E-value=5e-31 Score=172.22 Aligned_cols=155 Identities=22% Similarity=0.363 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++++..+.....++.+..+ ..+.. ..+.+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999988777777776443 33333 3467999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|++++.++.....|+..+..... .+.|+++++||+|+.+.. ..++...... ....+++++|+++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-----ELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEEeCCCCCCHHHHH
Confidence 99999999999988887765433 379999999999995432 2222222211 123579999999999999999
Q ss_pred HHHHHHh
Q 030000 174 DWLIKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+++.+.+
T Consensus 155 ~~i~~~l 161 (161)
T cd01861 155 RKIASAL 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 91
>PLN03110 Rab GTPase; Provisional
Probab=99.98 E-value=2.4e-31 Score=180.99 Aligned_cols=160 Identities=21% Similarity=0.331 Sum_probs=128.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|++|+|||||++++.++.+...+.+|.+..+. .+. ...+.+.+||+||++++...+..++++++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 4589999999999999999999999888777788876543 333 344789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
|+|++++.++..+..|+..+.... ..++|+++|+||+|+...... .+....+.. ...++++++||++|.|++++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~----~~~~~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAE----KEGLSFLETSALEATNVEKA 165 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHH----HcCCEEEEEeCCCCCCHHHH
Confidence 999999999999998887765442 357999999999998653322 122222211 12457999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+.+
T Consensus 166 f~~l~~~i~~ 175 (216)
T PLN03110 166 FQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHH
Confidence 9999887754
No 92
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.98 E-value=1.2e-30 Score=170.75 Aligned_cols=156 Identities=26% Similarity=0.411 Sum_probs=125.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EE--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RK--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
++||+++|++|+|||||++++.++.+.....+|.+..+ .. ++.....+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999988776677766332 22 344557899999999999999899999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+++++++.....|+..+..... .++|+++++||+|+.... ..++..+.... ...+++++||++|.|+.++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYADE-----NGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHHH-----cCCEEEEEECCCCCCHHHH
Confidence 999999999999988887765543 679999999999987422 23222222211 1247999999999999999
Q ss_pred HHHHHHHh
Q 030000 173 IDWLIKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
++++.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999876
No 93
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.98 E-value=4.4e-31 Score=173.62 Aligned_cols=158 Identities=20% Similarity=0.295 Sum_probs=125.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
++||+++|.+|||||||++++.++.+...+.+|.+..+. . +....+.+.+||+||++++...+..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 479999999999999999999999887777777764432 2 3334478899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|.++++++.....|...+.......+.|+++++||.|+.+.... ++..... . .....+++++||++|.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~-~---~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLS-Q---QWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHH-H---HcCCceEEEeeCCCCCCHHHHH
Confidence 99999999999988887766555568999999999998654321 1111111 0 0112579999999999999999
Q ss_pred HHHHHHh
Q 030000 174 DWLIKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+++...+
T Consensus 157 ~~i~~~~ 163 (168)
T cd04177 157 IDLVRQI 163 (168)
T ss_pred HHHHHHH
Confidence 9999765
No 94
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.98 E-value=1.6e-30 Score=170.96 Aligned_cols=158 Identities=20% Similarity=0.292 Sum_probs=126.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|++|+|||||++++.++.+.....+|.+.... . +......+.+||+||++++......+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 489999999999999999999998887777777664432 2 333447899999999999999889999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.++..+..|+..+.... .++.|+++|+||.|+.+.. ..++...... ....+++++||++|+|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAK-----EHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999888775543 3679999999999997432 2222222221 12346999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|+++.+.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 95
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=1.5e-30 Score=169.98 Aligned_cols=156 Identities=26% Similarity=0.438 Sum_probs=125.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.++.+.....++.+..+. . +....+.+.+||+||++.+......+++++|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999988887666777765443 2 2334578999999999999988899999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
|++++.++.....|+..+.......+.|+++++||+|+.... ..++..+... ...++++++|+++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR-----KHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH-----HcCCEEEEEecCCCCCHHHHHH
Confidence 999999999998888877666666789999999999997432 2322222221 1245799999999999999999
Q ss_pred HHHHHh
Q 030000 175 WLIKHS 180 (184)
Q Consensus 175 ~i~~~~ 180 (184)
++.+.+
T Consensus 156 ~~~~~~ 161 (161)
T cd01863 156 ELVEKI 161 (161)
T ss_pred HHHHhC
Confidence 998763
No 96
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.98 E-value=2.1e-30 Score=171.04 Aligned_cols=159 Identities=26% Similarity=0.440 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.+..+.....+|.+..+. .+ ....+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887777777765432 23 334477889999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCC---CCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 96 DAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
|+.++.++.....|...+..... ..++|+++|+||+|+..+. ..+........ ....+++++|+++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS----NGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH----cCCceEEEEECCCCCCHH
Confidence 99999998888777766544332 3479999999999997422 23332222211 112479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 157 ~l~~~i~~~~~~ 168 (172)
T cd01862 157 QAFETIARKALE 168 (172)
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 97
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=2.2e-30 Score=169.61 Aligned_cols=158 Identities=25% Similarity=0.454 Sum_probs=126.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|||||||++++.+..+.....++.+.... .+... .+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777777775443 33333 378999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|++++.+++.+..|+..+..... +++|+++++||+|+.+.. ..+...+... ...++++++|+++|+|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAE-----EHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHH
Confidence 99999999998888777655433 589999999999987632 2222222211 123469999999999999999
Q ss_pred HHHHHHhhhc
Q 030000 174 DWLIKHSKTA 183 (184)
Q Consensus 174 ~~i~~~~~~~ 183 (184)
++|.+.+.++
T Consensus 155 ~~i~~~~~~~ 164 (164)
T smart00175 155 EELAREILKR 164 (164)
T ss_pred HHHHHHHhhC
Confidence 9999987653
No 98
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=7.3e-31 Score=171.62 Aligned_cols=155 Identities=29% Similarity=0.502 Sum_probs=128.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--E--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--V--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
||+++|++|||||||++++.++.+...+.+|.+..... + +...+.+.+||++|++++.......++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999998888888655543 2 3355789999999999999989999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
.++++++..+..|+..+..... .+.|+++++||.|+.+.. ..++..+... ..+.+++++|++++.||.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-----ELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-----HTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-----HhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999999888766544 568999999999998632 2222222221 1124799999999999999999
Q ss_pred HHHHHhh
Q 030000 175 WLIKHSK 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
.+.+.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
No 99
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=1.7e-30 Score=170.23 Aligned_cols=155 Identities=16% Similarity=0.303 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccceeEEE--E--e-ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG--GYSEDMIPTVGFNMRK--V--T-KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~t~~~~~~~--~--~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+||+++|++|||||||++++..+ .+...+.+|.+..... + . ...+.+.+||+||++.+...+..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 5677777888755432 2 2 34588999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH-HHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA-LVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+|+|+++++++.....|+..+.... .+.|+++|+||+|+.+...... ..+.+. .....+++++||++|.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999998888887765442 5699999999999965432221 111111 11124699999999999999
Q ss_pred HHHHHHHHh
Q 030000 172 VIDWLIKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+++.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998865
No 100
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=5.7e-31 Score=176.65 Aligned_cols=160 Identities=20% Similarity=0.259 Sum_probs=119.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEE--eecCEEEEEEEcCCccchh--------HhHHhhccC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKV--TKGNVTIKLWDLGGQRRFR--------TMWERYCRG 87 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~--~~~~~~~~~~d~~g~~~~~--------~~~~~~~~~ 87 (184)
+||+|+|.+|+|||||++++.++.+...+.+|.+... ..+ ....+.+.+|||||...+. ......+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999998877777776332 223 3344788999999965431 112345789
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCC--CCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeee
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+|++++|||++++++++....|+..+.... ...++|+++|+||+|+.... ..++..+... ....++++++||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCcEEEecC
Confidence 999999999999999999988888776543 24679999999999996532 1222111111 112457999999
Q ss_pred ccCCCHHHHHHHHHHHhhhc
Q 030000 164 KDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~~ 183 (184)
++|.|++++|+.+.+.+-.+
T Consensus 157 k~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 157 KYNWHILLLFKELLISATTR 176 (198)
T ss_pred CCCCCHHHHHHHHHHHhhcc
Confidence 99999999999999876543
No 101
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=2.3e-30 Score=169.48 Aligned_cols=158 Identities=22% Similarity=0.327 Sum_probs=127.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||++++..+.+...+.++.+..+.. +....+.+.+||+||+.++......+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999988877777766643333 33345789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--cCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+.++.++.....|+..+.......++|+++|+||+|+.+. ........... ....+++++||++|.|++++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLAR-----QWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHH-----HhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999888877655568999999999999762 22222222111 1124799999999999999999
Q ss_pred HHHHHhhh
Q 030000 175 WLIKHSKT 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99988754
No 102
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=2e-30 Score=171.47 Aligned_cols=160 Identities=19% Similarity=0.237 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|+|||||++++..+.+...+.+|.+..+. . +....+.+.+||+||++.+...+..+++++|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999887777777653322 2 33345778999999999999888889999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc----------cCCCceeEEEeeeccC
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES----------ITDREVCCYMISCKDS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~Sa~~~ 166 (184)
.+++.++......+...+... .++.|+++++||+|+.+............... ......+++++||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999998865444444333 46899999999999855322111111000000 0011236899999999
Q ss_pred CCHHHHHHHHHHHh
Q 030000 167 INIDAVIDWLIKHS 180 (184)
Q Consensus 167 ~~i~~l~~~i~~~~ 180 (184)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998865
No 103
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=8.6e-31 Score=175.88 Aligned_cols=156 Identities=22% Similarity=0.319 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+||+++|++|+|||||++++..+.+.. .+.+|.+..+. .+. ...+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988864 56677775442 233 3447788999999999998888999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC------HHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS------KQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|++++.++.....|+..+... ..+.|+++|+||+|+.+... .++..+ +. .....+++++||++|.|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~g 153 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD-FA----DEIKAQHFETSSKTGQN 153 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHH-HH----HHcCCeEEEEeCCCCCC
Confidence 9999999999888888776443 24799999999999864321 111111 11 11234689999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
++++++++.+.+.+
T Consensus 154 v~~l~~~i~~~~~~ 167 (193)
T cd04118 154 VDELFQKVAEDFVS 167 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
No 104
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=1.5e-30 Score=172.08 Aligned_cols=159 Identities=23% Similarity=0.284 Sum_probs=118.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
|+|+|++|+|||||++++..+.+...+.+|....+. . +....+.+.+|||||++++...+..+++++|++++|+|++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 579999999999999999999988777777654433 2 2334567999999999999998899999999999999999
Q ss_pred CCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHH--------hCCCccCCCc-eeEEEeeeccCC
Q 030000 99 DRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQ--------LGLESITDRE-VCCYMISCKDSI 167 (184)
Q Consensus 99 ~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~--------~~~~~~~~~~-~~~~~~Sa~~~~ 167 (184)
++++++.+.. |+..+... .+++|+++|+||+|+...... ....+. .........+ .+++++||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999998864 55555433 257999999999998653211 000000 0000001112 368999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
|++++|+.+.+.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999987754
No 105
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.8e-30 Score=169.43 Aligned_cols=160 Identities=19% Similarity=0.240 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 97 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+||+++|++|+|||||++++..+.+.....++...... .+....+.+++||+||++.+...+..++..+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999998886554443332222 2344678899999999998888778888999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH---HHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 98 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ---ALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+++.++..+..++...++... .+.|+++|+||+|+.+..... +....+.. .. ....+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~-~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMN-EF-REIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHH-HH-hcccEEEEeccccccCHHHHHH
Confidence 999999987654444433322 479999999999997654321 11111100 00 0112689999999999999999
Q ss_pred HHHHHhhh
Q 030000 175 WLIKHSKT 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
.+.+.+..
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887643
No 106
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=1.3e-29 Score=171.83 Aligned_cols=159 Identities=19% Similarity=0.289 Sum_probs=126.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|++|+|||||++++....+...+.+|.+.... .+....+.+.+||++|++.+...+..+++++|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999998888777777775543 233344778999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|++++.++..+..|+..+.... ..+.|+++++||+|+.... ..++..+... ...++++++||+++.|+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAK-----EHGLIFMEASAKTAQNVEE 158 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHH
Confidence 999999999999988877665432 3579999999999986532 2222222211 1234799999999999999
Q ss_pred HHHHHHHHhhh
Q 030000 172 VIDWLIKHSKT 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+++.+.+.+
T Consensus 159 ~f~~l~~~~~~ 169 (210)
T PLN03108 159 AFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHH
Confidence 99999887753
No 107
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=7.1e-30 Score=168.96 Aligned_cols=159 Identities=20% Similarity=0.257 Sum_probs=118.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.||+++|++|||||||++++..+.+...+.+|.+..+. . +....+.+.+||+||++++...+..++.++|++++|+|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999888777777764432 2 33445788999999999998888788999999999999
Q ss_pred CCCCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc----------cCCCceeEEEeeecc
Q 030000 97 AADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES----------ITDREVCCYMISCKD 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~Sa~~ 165 (184)
+++++++..... |...+... ..+.|+++++||+|+.+.....+......... ......++++|||++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999888864 44444322 24789999999999865322111111000000 001234799999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030000 166 SINIDAVIDWLIKHS 180 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~ 180 (184)
|.|++++|+++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 108
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=1.9e-29 Score=164.78 Aligned_cols=155 Identities=25% Similarity=0.353 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||+++++++.+.....++.+... ..+. ...+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999998888766555554333 2333 33467899999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|+++++++.....|+..+..... .++|+++++||+|+..... .++..+... ....+++++|+++|+|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAK-----SVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHH
Confidence 99999999988888777655433 4799999999999875332 222222221 123468999999999999999
Q ss_pred HHHHHHh
Q 030000 174 DWLIKHS 180 (184)
Q Consensus 174 ~~i~~~~ 180 (184)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998865
No 109
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=9.6e-30 Score=171.27 Aligned_cols=157 Identities=22% Similarity=0.290 Sum_probs=123.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc-eeEEEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG-FNMRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 97 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
||+++|++|+|||||+++++.+.+...+.+|.. .....+...+ +.+++||+||+..+...+..+++++|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999999888776666654 3223344333 7899999999999988888899999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 98 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+++.++.....|+..+.......++|+++++||+|+.+... .+...+... .....+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHH
Confidence 99999999998888887765556899999999999865321 111111111 01124689999999999999999
Q ss_pred HHHHHhh
Q 030000 175 WLIKHSK 181 (184)
Q Consensus 175 ~i~~~~~ 181 (184)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998765
No 110
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=4.9e-30 Score=174.31 Aligned_cols=160 Identities=21% Similarity=0.362 Sum_probs=122.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|+|||||++++..+.+. .+.+|.+.... .+. ...+.+.+||+||++++...+..+++++|+++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 35799999999999999999999987764 45666665442 233 34578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 93 YVVDAADRDSVPIARSELHELLM-KPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
+|+|+++++++..+..++...+. .....+.|+++|+||+|+...... ++...... ....+++++||++|.|+
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~-----~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK-----EHGCLFLECSAKTRENV 165 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence 99999999999998775544433 233456899999999998654322 22221111 12346999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030000 170 DAVIDWLIKHSKT 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++|+++.+.+..
T Consensus 166 ~~l~~~l~~~~~~ 178 (211)
T PLN03118 166 EQCFEELALKIME 178 (211)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987754
No 111
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=1.4e-30 Score=172.02 Aligned_cols=154 Identities=21% Similarity=0.257 Sum_probs=115.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EE--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RK--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+|++++|++|+|||||+.++..+.+...+.+|....+ .. ++...+.+.+||+||++++...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999999888887777764222 12 33445788999999999999988889999999999999
Q ss_pred CCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-------------HHHHHHhCCCccCCCceeEEEee
Q 030000 97 AADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSK-------------QALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
++++.+++... .|+..+... ..+.|+++++||+|+.+.... .+....+.. ......++++|
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~---~~~~~~~~e~S 155 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE---KIGACEYIECS 155 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH---HhCCCeEEEEe
Confidence 99999999885 455555432 246999999999998643210 000111100 01123799999
Q ss_pred eccCCCHHHHHHHHHH
Q 030000 163 CKDSINIDAVIDWLIK 178 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~ 178 (184)
|++|.|++++|+.++-
T Consensus 156 a~~~~~v~~lf~~~~~ 171 (173)
T cd04130 156 ALTQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 9999999999998763
No 112
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=4.7e-30 Score=168.26 Aligned_cols=156 Identities=17% Similarity=0.232 Sum_probs=117.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE---EEEeecCEEEEEEEcCCccc-hhHhHHhhccCCCEEEEEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQRR-FRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~d~~g~~~-~~~~~~~~~~~~~~~i~v~d 96 (184)
||+++|++|+|||||+++++.+.+...+.+|.+..+ ..++...+.+.+||+||++. +......+++++|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 589999999999999999998887766666654222 22444557899999999985 34456778899999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCC-CHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSI-NIDAV 172 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l 172 (184)
++++.+++.+..|+..+..... ..+.|+++|+||+|+.+... .++..+... ....+++++||++|. |++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLAS-----ELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHH-----HcCCEEEEeCCCCCchhHHHH
Confidence 9999999999888776654332 45799999999999865322 211111111 112469999999995 99999
Q ss_pred HHHHHHHhh
Q 030000 173 IDWLIKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
|+++.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998764
No 113
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.6e-30 Score=172.83 Aligned_cols=157 Identities=20% Similarity=0.238 Sum_probs=110.7
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCCCCccce-e-EE-----------EEeecCEEEEEEEcCCccchhH
Q 030000 19 EMELSLIGLQNAGKTSLVN-TIATGG-----YSEDMIPTVGF-N-MR-----------KVTKGNVTIKLWDLGGQRRFRT 79 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~-~~~~~~-----~~~~~~~t~~~-~-~~-----------~~~~~~~~~~~~d~~g~~~~~~ 79 (184)
.+||+++|+.|+|||||+. ++.++. +...+.+|.+. . +. .++...+.+.+|||+|+++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 555443 34556677752 1 11 23455789999999999763
Q ss_pred hHHhhccCCCEEEEEEeCCCCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccC----------------HHHH
Q 030000 80 MWERYCRGVSAILYVVDAADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALS----------------KQAL 142 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------------~~~~ 142 (184)
....+++++|++++|||++++.++..+.. |...+.... ++.|+++|+||+|+..... ....
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 34557899999999999999999999974 666553332 4789999999999853100 0000
Q ss_pred HHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHH
Q 030000 143 VDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 179 (184)
....+.......++++++|||++|.||+++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 0000111111234579999999999999999999864
No 114
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=4.5e-29 Score=162.33 Aligned_cols=153 Identities=27% Similarity=0.462 Sum_probs=123.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE--e--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV--T--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~--~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
+||+++|++|+|||||++++.+..+.....+|.+...... . .....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998887777777655542 2 24588999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc--cccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS--EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|+++++++.....|+..+.... ..+.|+++++||+|+. .....++..+.... ...+++++|+++|.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-----NGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHH-----cCCeEEEEecCCCCCHHHHH
Confidence 9999888999888887776553 2579999999999996 22233333332221 34579999999999999999
Q ss_pred HHHHH
Q 030000 174 DWLIK 178 (184)
Q Consensus 174 ~~i~~ 178 (184)
++|.+
T Consensus 155 ~~i~~ 159 (159)
T cd00154 155 QSLAE 159 (159)
T ss_pred HHHhC
Confidence 99863
No 115
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=4.5e-29 Score=165.83 Aligned_cols=159 Identities=17% Similarity=0.330 Sum_probs=126.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee-EEEEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN-MRKVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~-~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.||+++|++|+|||||++++.++.+.....+|.+.. ...+.. ..+.+.+||+||++++...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999888876666666532 233333 34678999999999999889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
.++..+++....++..+.+.....+.|+++++||+|+..... .++...... ....+++++||++|.|+.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE-----SWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999988887766556889999999999864322 111111111 1124799999999999999999
Q ss_pred HHHHHhhhc
Q 030000 175 WLIKHSKTA 183 (184)
Q Consensus 175 ~i~~~~~~~ 183 (184)
++.+.+...
T Consensus 157 ~l~~~~~~~ 165 (180)
T cd04137 157 LLIEEIEKV 165 (180)
T ss_pred HHHHHHHHh
Confidence 999887653
No 116
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=1.1e-29 Score=173.28 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccc--eeEEE--EeecCEEEEEEEcCCccchhHhHHhhcc-CCCEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS-EDMIPTVG--FNMRK--VTKGNVTIKLWDLGGQRRFRTMWERYCR-GVSAILY 93 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~--~~~~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~-~~~~~i~ 93 (184)
+||+++|++|+|||||++++..+.+. ..+.++.+ ..... +......+.+||+||++.+ ....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 58999999999999999999888775 55556653 22233 3345688999999999832 2334556 8999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|||++++.++.....|+..+.......++|+++|+||+|+.+... .++. ..+. ....++++++||++|.|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~a----~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RACA----VVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHHH----HHcCCeEEEecCCCCCCHHH
Confidence 999999999999988888776654446899999999999865432 1111 1111 11234689999999999999
Q ss_pred HHHHHHHHhh
Q 030000 172 VIDWLIKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
+|+++.+.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 117
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=8.3e-29 Score=162.97 Aligned_cols=158 Identities=24% Similarity=0.366 Sum_probs=122.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..++|+++|++|||||||++++..+.+.....+|.+... ..+... .+.+.+||+||++.+...+..++..+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 458999999999999999999998888777777776333 233333 4678999999999999988999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
|+|+.++.++.....|+..+... ...++|+++++||+|+.+.... ....+.+.. ....+++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSD----AQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHH----HcCCeEEEeeCCCCCCHHHH
Confidence 99999988888888877655332 3357999999999998654332 222222211 11246999999999999999
Q ss_pred HHHHHHHh
Q 030000 173 IDWLIKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
|+++.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998764
No 118
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=3.9e-29 Score=163.05 Aligned_cols=155 Identities=25% Similarity=0.361 Sum_probs=123.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 97 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
||+++|++|||||||++++++..+.....++.+.... .+... .+.+.+||+||++.+......+++++|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 6899999999999999999988877777776663222 23333 57899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 98 ADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
++++++.....++..+.........|+++++||+|+.... ..+........ ...+++++|+++|.|+++++++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKE-----WGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHH-----cCCcEEEeccCCCCCHHHHHHH
Confidence 9999999999988888776555689999999999987632 12222222111 1147999999999999999999
Q ss_pred HHHHh
Q 030000 176 LIKHS 180 (184)
Q Consensus 176 i~~~~ 180 (184)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98764
No 119
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=2.2e-29 Score=166.01 Aligned_cols=157 Identities=18% Similarity=0.283 Sum_probs=116.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
+||+++|++|||||||++++.++.+.....++...... ......+.+.+||+||++++.......++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999999886666665543222 233446789999999999888777788899999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH----------HHHHhCCCccCCCceeEEEeeeccC
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA----------LVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
++++.++......+...+.... .+.|+++|+||+|+........ ..+.... .......+++++||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKL-AKEIGAIGYMECSALTQ 158 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHH-HHHhCCeEEEEeecCCC
Confidence 9998888887665544443322 4799999999999976553211 0000000 01112237999999999
Q ss_pred CCHHHHHHHHHH
Q 030000 167 INIDAVIDWLIK 178 (184)
Q Consensus 167 ~~i~~l~~~i~~ 178 (184)
.|+++++++|.+
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 120
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=5.5e-28 Score=164.73 Aligned_cols=159 Identities=23% Similarity=0.429 Sum_probs=128.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----eecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|||||||+++++.+.+...+.+|.+...... ..+.+.+.+||++|++++...+..++.++++++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 4569999999999999999999988888888888888766553 345689999999999999888888999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+|+++..++..+..|+..+.... .+.|+++++||+|+.+.....+..... ......++++|+++|.|++++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 87 IMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFH-----RKKNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHH-----HHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999988887775442 478999999999986432222222211 122346899999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|.+|.+.+..
T Consensus 160 f~~ia~~l~~ 169 (215)
T PTZ00132 160 FLWLARRLTN 169 (215)
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 121
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=2.4e-28 Score=163.07 Aligned_cols=157 Identities=22% Similarity=0.262 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.||+++|++|+|||||++++..+.+...+.+|....+. . +......+.+||++|++.+.......+.+++++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988887666666553332 2 23344678999999999887776677899999999999
Q ss_pred CCCCCCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccC------------HHHHHHHhCCCccCCCceeEEEeee
Q 030000 97 AADRDSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALS------------KQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++.+++..+.. |...+... .+++|+++|+||+|+.+... .++ ...+.. .....+++++||
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~e~Sa 155 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQ-GKRVAK---EIGAKKYMECSA 155 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHH-HHHHHH---HhCCcEEEEccC
Confidence 999999998875 55555432 24699999999999854211 011 111100 011236999999
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
++|.|++++|+++.+.+..
T Consensus 156 ~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 156 LTGEGVDDVFEAATRAALL 174 (187)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999977654
No 122
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.96 E-value=1.2e-28 Score=149.54 Aligned_cols=176 Identities=30% Similarity=0.532 Sum_probs=156.4
Q ss_pred HHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecC-EEEEEEEcCCccchhHhHH
Q 030000 4 LDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRFRTMWE 82 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~ 82 (184)
+.++...+++.+ .+++||+++|-.++|||||++.+. ++.+....+|.|++..++...+ +.+++||.+|+...+..|.
T Consensus 3 l~til~~~ks~t-~rEirilllGldnAGKTT~LKqL~-sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWs 80 (185)
T KOG0074|consen 3 LETILCCCKSRT-RREIRILLLGLDNAGKTTFLKQLK-SEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWS 80 (185)
T ss_pred HHHHHHHhcCCC-cceEEEEEEecCCCcchhHHHHHc-cCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhh
Confidence 344444455544 788999999999999999999995 4445677899999999998776 9999999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEee
Q 030000 83 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.|+.+.|++|||+|.+|...|+.+...+.+++.......+|+++..||.|+......++....+.+.....+.+.+-+||
T Consensus 81 NYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~cs 160 (185)
T KOG0074|consen 81 NYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECS 160 (185)
T ss_pred hhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCc
Confidence 99999999999999999999999999999999888888999999999999999888889998888888888899999999
Q ss_pred eccCCCHHHHHHHHHHHhh
Q 030000 163 CKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~ 181 (184)
|.+++|+..-.+|+....+
T Consensus 161 als~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 161 ALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred cccccCccCcchhhhcCCC
Confidence 9999999999999887654
No 123
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.4e-29 Score=156.97 Aligned_cols=169 Identities=32% Similarity=0.609 Sum_probs=148.0
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhc-------CCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccC
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIAT-------GGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRG 87 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~-------~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 87 (184)
+.+..+.|+++|..++|||||+.+.-. +-.+....+|.|.+...+...+..+.+||.+||+..++.|..+|..
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHH
Confidence 456789999999999999999998752 1122345679999999999889999999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCC-CccCCCceeEEEeeeccC
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL-ESITDREVCCYMISCKDS 166 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~ 166 (184)
++++|+++|+++++.++.....+..+.......++|+++.+||.|+.+....+++...++. .....+..++.++||.+|
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~g 172 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTG 172 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence 9999999999999999999999999888888889999999999999988888888877773 334456778999999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q 030000 167 INIDAVIDWLIKHSKTA 183 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~~ 183 (184)
+||++...|+...++++
T Consensus 173 egv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 173 EGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccHHHHHHHHHHHHhhc
Confidence 99999999999998875
No 124
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.8e-29 Score=150.75 Aligned_cols=174 Identities=34% Similarity=0.599 Sum_probs=155.8
Q ss_pred HHhhhhcc-ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 10 WLRSLFFK-QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 10 ~~~~~~~~-~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
+++.+... .+.+|+++|..|+||||++.++.-++. ....||.|++...+.+++.++++||.+|+...+..|..|+.+.
T Consensus 8 ~f~~L~g~e~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt 86 (182)
T KOG0072|consen 8 LFKALQGPEREMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADT 86 (182)
T ss_pred HHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCccccccccccceeeEccCcccccHHHHHHhccc
Confidence 34444444 789999999999999999988865553 3567899999999999999999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++|||+|.+|.+.+......+..++.+....+..++++.||.|..-.....+....+++.....+.+.+|.+||.+|+|
T Consensus 87 ~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~G 166 (182)
T KOG0072|consen 87 DAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEG 166 (182)
T ss_pred ceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccC
Confidence 99999999999999999998888888887778888999999999988888899999999988888999999999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q 030000 169 IDAVIDWLIKHSKTAK 184 (184)
Q Consensus 169 i~~l~~~i~~~~~~~~ 184 (184)
+++..+|+.+-++.++
T Consensus 167 ld~~~DWL~~~l~~~~ 182 (182)
T KOG0072|consen 167 LDPAMDWLQRPLKSRQ 182 (182)
T ss_pred CcHHHHHHHHHHhccC
Confidence 9999999999888753
No 125
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=8.5e-30 Score=157.49 Aligned_cols=159 Identities=28% Similarity=0.389 Sum_probs=127.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
-.|||+++|..-+|||||+-+++.++|.....+|....+ .+++ ....++.||||+||++|+..-+.|+++.+++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 369999999999999999999999999888777765333 3333 445778999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|||++|+++|+....|..++..... ..+-+++|+||+|+.+... .++..... ......++++||+++.||.+
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDLEeeR~Vt~qeAe~YA-----esvGA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDLEEERQVTRQEAEAYA-----ESVGALYMETSAKDNVGISE 165 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccHHHhhhhhHHHHHHHH-----HhhchhheecccccccCHHH
Confidence 9999999999999999998855433 6688999999999965322 12222211 22344699999999999999
Q ss_pred HHHHHHHHhhh
Q 030000 172 VIDWLIKHSKT 182 (184)
Q Consensus 172 l~~~i~~~~~~ 182 (184)
+|+.+...+.+
T Consensus 166 lFe~Lt~~MiE 176 (218)
T KOG0088|consen 166 LFESLTAKMIE 176 (218)
T ss_pred HHHHHHHHHHH
Confidence 99988876643
No 126
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.9e-30 Score=158.63 Aligned_cols=153 Identities=24% Similarity=0.432 Sum_probs=127.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe-------------ecCEEEEEEEcCCccchhHhHHhhcc
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT-------------KGNVTIKLWDLGGQRRFRTMWERYCR 86 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~-------------~~~~~~~~~d~~g~~~~~~~~~~~~~ 86 (184)
+|.+.+|++|+||||++.+...++|.....+|+|+++..-. ...+-+++|||+||++|++..-.+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999997776521 12367899999999999999999999
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-----HHHHHHhCCCccCCCceeEEEe
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESITDREVCCYMI 161 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
++=++++++|+++..+|.+...|+.++..+.-..+..+++++||+|+.+.... ..+.+.++ .|||++
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyg--------lPYfET 161 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYG--------LPYFET 161 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhC--------CCeeee
Confidence 99999999999999999999999998866655567789999999999664322 23333333 479999
Q ss_pred eeccCCCHHHHHHHHHHHh
Q 030000 162 SCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~~~ 180 (184)
||-+|.||++..+.+.+.+
T Consensus 162 SA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 162 SACTGTNVEKAVELLLDLV 180 (219)
T ss_pred ccccCcCHHHHHHHHHHHH
Confidence 9999999998887776654
No 127
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=2.2e-27 Score=159.01 Aligned_cols=117 Identities=28% Similarity=0.403 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe-------ecCEEEEEEEcCCccchhHhHHhhccCCCE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT-------KGNVTIKLWDLGGQRRFRTMWERYCRGVSA 90 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~-------~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 90 (184)
+||+++|++|+|||||++++.++.+...+.+|.+.... .+. ...+.+++||++|++++......+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999998888888884432 222 245789999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCC------------------CCCCCcEEEEEeCCCcccc
Q 030000 91 ILYVVDAADRDSVPIARSELHELLMKP------------------SLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~iivv~nK~D~~~~ 136 (184)
+|+|||++++.+++.+..|+..+.... ...++|+++|+||.|+.+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 999999999999999999998886531 2357999999999998653
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.96 E-value=7.7e-27 Score=153.46 Aligned_cols=154 Identities=18% Similarity=0.124 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEeecCEEEEEEEcCCccchh---------HhHHhhccCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRFR---------TMWERYCRGV 88 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~~~~ 88 (184)
.+|+++|++|+|||||++++.+..+.... ..|.+.....+...+..+++|||||+.... .........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 37999999999999999999988764322 235556666666677899999999974210 1111112336
Q ss_pred CEEEEEEeCCCCCCH--HHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 89 SAILYVVDAADRDSV--PIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
|++++|+|+++..++ .....++..+... ..+.|+++|+||+|+.+.....+..+.. ....++++++||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEEE-----ELEGEEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHhh-----hhccCceEEEEeccc
Confidence 899999999887654 4444555544322 1479999999999997654433311111 223457999999999
Q ss_pred CCHHHHHHHHHHHh
Q 030000 167 INIDAVIDWLIKHS 180 (184)
Q Consensus 167 ~~i~~l~~~i~~~~ 180 (184)
.|++++++++.+++
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999876
No 129
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.3e-29 Score=152.43 Aligned_cols=151 Identities=28% Similarity=0.462 Sum_probs=126.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC
Q 030000 24 LIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 24 v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
++|++++|||+|+-++..+.|-. ...+|+|+.+.. +....+++++|||+||++|++....+++++|+.+++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999999988777743 445788876653 4566789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc-----cCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 99 DRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA-----LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
+..||++...|+.++..+. ...+.+++++||+|+..+ ++-+.+.+..+. |++++||++|.|++..|
T Consensus 82 nkasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i--------pfmetsaktg~nvd~af 152 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI--------PFMETSAKTGFNVDLAF 152 (192)
T ss_pred cchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchhhccccchHHHHHHHHCC--------CceeccccccccHhHHH
Confidence 9999999999999886653 367889999999999542 233555565554 69999999999999999
Q ss_pred HHHHHHhhhc
Q 030000 174 DWLIKHSKTA 183 (184)
Q Consensus 174 ~~i~~~~~~~ 183 (184)
-.|.+.+.+.
T Consensus 153 ~~ia~~l~k~ 162 (192)
T KOG0083|consen 153 LAIAEELKKL 162 (192)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.96 E-value=4.1e-27 Score=155.04 Aligned_cols=157 Identities=23% Similarity=0.209 Sum_probs=110.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecCE-EEEEEEcCCccc----h---hHhHHhhccCCCE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNV-TIKLWDLGGQRR----F---RTMWERYCRGVSA 90 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~----~---~~~~~~~~~~~~~ 90 (184)
+|+++|.+|||||||++++.+...... ...|.......+...+. .+.+|||||+.+ . ...+...+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 689999999999999999987654221 22344444444555555 899999999642 1 1122233557999
Q ss_pred EEEEEeCCCC-CCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 91 ILYVVDAADR-DSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 91 ~i~v~d~~~~-~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|++++ .++.....|...+..... ..++|+++|+||+|+.+.....+....+... ....+++++||+++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKE---LWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhh---CCCCCEEEEecCCCCC
Confidence 9999999998 788888877776654322 2478999999999997655443333322111 0234689999999999
Q ss_pred HHHHHHHHHHHh
Q 030000 169 IDAVIDWLIKHS 180 (184)
Q Consensus 169 i~~l~~~i~~~~ 180 (184)
++++++++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 131
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=7.8e-28 Score=160.05 Aligned_cols=160 Identities=26% Similarity=0.366 Sum_probs=135.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.+||+++|.+|+|||+|..++..+.|...+.+|++..+.+ ++.+.+.+.|+||+|++++..+...++++.+++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999854543 556668899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
|++++..||+....++..+.+......+|+++|+||+|+.... ..++- +.+ .....++++++||+.+.+++++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg-~~l----a~~~~~~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEG-KAL----ARSWGCAFIETSAKLNYNVDEV 156 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHH-HHH----HHhcCCcEEEeeccCCcCHHHH
Confidence 9999999999999999999777777789999999999997632 22221 111 2334456999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
|..+...+..
T Consensus 157 F~~L~r~~~~ 166 (196)
T KOG0395|consen 157 FYELVREIRL 166 (196)
T ss_pred HHHHHHHHHh
Confidence 9999987765
No 132
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.95 E-value=1.2e-26 Score=154.03 Aligned_cols=152 Identities=20% Similarity=0.297 Sum_probs=108.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC-------CCCCCCCcc------ceeE----EEE-----eecCEEEEEEEcCCccchh
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGG-------YSEDMIPTV------GFNM----RKV-----TKGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~-------~~~~~~~t~------~~~~----~~~-----~~~~~~~~~~d~~g~~~~~ 78 (184)
+|+++|++++|||||++++++.. +...+.++. +... ... +..++.+++|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998632 111111111 1111 112 3457889999999999999
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCccCCCc
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESITDRE 155 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~ 155 (184)
..+..+++++|++++|+|+++..+......+.. ... .++|+++|+||+|+.+... .+++.+.++. ..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~-----~~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGL-----DP 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCC-----Cc
Confidence 999999999999999999998766666554433 221 4689999999999864321 1233333322 12
Q ss_pred eeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 156 VCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 156 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..++++||++|+|++++++++.+.++.
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 358999999999999999999987753
No 133
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.95 E-value=1.8e-26 Score=150.99 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=103.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCC--CCCccceeEEEEeec-CEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG---YSED--MIPTVGFNMRKVTKG-NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~---~~~~--~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.|+++|++|+|||||++++.+.. +... ...|.+.....+... +..+.+|||||++++......+++++|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 368999999999999999998632 2222 223444444444444 6789999999999988777778899999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH----HHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
|+|+++..... ....+. .+... ...|+++++||+|+.+.... ++..+.+... .....+++++||++|+|+
T Consensus 81 V~d~~~~~~~~-~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 81 VVAADEGIMPQ-TREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEECCCCccHh-HHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCcCH
Confidence 99997632111 112111 11111 22489999999999654221 2233333211 113457999999999999
Q ss_pred HHHHHHHHH
Q 030000 170 DAVIDWLIK 178 (184)
Q Consensus 170 ~~l~~~i~~ 178 (184)
+++++++.+
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998864
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.95 E-value=3.1e-26 Score=155.06 Aligned_cols=154 Identities=22% Similarity=0.279 Sum_probs=109.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEeecC-EEEEEEEcCCccc---------hhHhHHhh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGN-VTIKLWDLGGQRR---------FRTMWERY 84 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~---------~~~~~~~~ 84 (184)
+..++|+++|++|||||||++++.+..+.. ...+|.......+...+ ..+.+||+||..+ +.... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 345899999999999999999999876432 23345555555555444 4899999999732 22211 23
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+.++|++++|+|++++.++.....+...+ ......++|+++|+||+|+.+..... .. ......+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcC
Confidence 66899999999999888877665544433 33334578999999999996643322 11 12234469999999
Q ss_pred cCCCHHHHHHHHHHHh
Q 030000 165 DSINIDAVIDWLIKHS 180 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~ 180 (184)
+|.|+++++++|.+++
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998764
No 135
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.8e-26 Score=139.59 Aligned_cols=155 Identities=21% Similarity=0.327 Sum_probs=124.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.||-+++|+-|+|||+|+..+...+|-...+.|+|..+. .+....+++++||++|+++|+.....+++.+.+.++|
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv 90 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 90 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence 589999999999999999999988887777788875554 3556678899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++.+.++..+..|+....+. ..++..+++++||.|+....+. ++..+... .....++++||++|.|+++.
T Consensus 91 yditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~fae-----engl~fle~saktg~nveda 164 (215)
T KOG0097|consen 91 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFAE-----ENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred EEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHHh-----hcCeEEEEecccccCcHHHH
Confidence 9999999999999999887544 3477889999999999664432 22222111 22346999999999999988
Q ss_pred HHHHHHH
Q 030000 173 IDWLIKH 179 (184)
Q Consensus 173 ~~~i~~~ 179 (184)
|-...+.
T Consensus 165 fle~akk 171 (215)
T KOG0097|consen 165 FLETAKK 171 (215)
T ss_pred HHHHHHH
Confidence 8544433
No 136
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.95 E-value=9.7e-26 Score=148.19 Aligned_cols=156 Identities=22% Similarity=0.252 Sum_probs=110.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEee---cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.|+++|++|+|||||++++..+.+.....+ |.......+.. .+..+.+|||||++.+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998876654322 33333333443 3678999999999999888888899999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHH---hCCCc--cCCCceeEEEeeeccCCCHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ---LGLES--ITDREVCCYMISCKDSINID 170 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~Sa~~~~~i~ 170 (184)
|+++........ .+..+ .. .++|+++|+||+|+.... .+...+. +.... .....++++++|+++|+|++
T Consensus 82 d~~~~~~~~~~~-~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQTIE-AIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHHHH-HHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 998754332222 12222 22 478999999999986432 2222221 11111 12345689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+..++
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T cd01887 156 DLLEAILLLAEK 167 (168)
T ss_pred HHHHHHHHhhhc
Confidence 999999987653
No 137
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.95 E-value=8.9e-26 Score=161.52 Aligned_cols=161 Identities=19% Similarity=0.195 Sum_probs=118.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEee-cCEEEEEEEcCCccc-------hhHhHHhhccCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTK-GNVTIKLWDLGGQRR-------FRTMWERYCRGV 88 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~-------~~~~~~~~~~~~ 88 (184)
-..|+++|.++||||||++++.+.+.... ..+|.......+.. ....+.+||+||..+ ....+..+++++
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 46799999999999999999997654322 23566666766766 457899999999642 233445567789
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccccCHH-HHHHHhCCCccCCCceeEEEeeeccC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+++++|+|+++.++++....|..++..+.. ..++|+++|+||+|+.+..... +..+... .....+++++||+++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~----~~~~~~i~~iSAktg 313 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALEL----AALGGPVFLISAVTG 313 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHH----HhcCCCEEEEEcCCC
Confidence 999999999988888888888777755422 2478999999999986544322 1111111 112357999999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q 030000 167 INIDAVIDWLIKHSKTA 183 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~~ 183 (184)
+|++++++++.+.+.+.
T Consensus 314 ~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 314 EGLDELLRALWELLEEA 330 (335)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988654
No 138
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.94 E-value=1.8e-25 Score=167.66 Aligned_cols=160 Identities=21% Similarity=0.183 Sum_probs=113.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCcc----------chhHhH-Hh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR----------RFRTMW-ER 83 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~-~~ 83 (184)
..++|+++|.+|+|||||++++++.... ...+.|.......+...+..+.+|||||.. .+.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4689999999999999999999987642 223344445455566777888999999953 222221 23
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++++|++++|+|++++.++.... ++..+.. .++|+++|+||+|+.+........+.+..........+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 578999999999999988877664 3333322 47899999999999754332222222221111223457999999
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
++|.|++++|+.+.+.+++
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987754
No 139
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=2.8e-25 Score=144.36 Aligned_cols=154 Identities=22% Similarity=0.322 Sum_probs=116.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EeecC--EEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+||+++|.+|+|||||++++..+.+...+.++.+..... +...+ +.+.+||+||+..+...+....++++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3799999999999999999999888766666666655544 55556 8899999999999998888888999999999
Q ss_pred EeCCCC-CCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADR-DSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|.... .++.... .+...+...... +.|+++++||+|+............+... ...+++++||++|.|+.++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAKLKTHVAFLFAKL----NGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcchhhHHHHHHHhhc----cCCceEEeecCCCCCHHHH
Confidence 998766 5555554 444444443332 78999999999997654333333333221 2235999999999999999
Q ss_pred HHHHH
Q 030000 173 IDWLI 177 (184)
Q Consensus 173 ~~~i~ 177 (184)
+++|.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 99874
No 140
>PRK04213 GTP-binding protein; Provisional
Probab=99.94 E-value=1.5e-26 Score=156.19 Aligned_cols=161 Identities=25% Similarity=0.304 Sum_probs=106.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCC-----------ccchhHhHHhhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG-----------QRRFRTMWERYC 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g-----------~~~~~~~~~~~~ 85 (184)
...++|+++|.+|+|||||++++.+..+.....++.+.....+... .+.+||||| ++.+...+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 3468999999999999999999998776554445444433344433 689999999 566666655554
Q ss_pred c----CCCEEEEEEeCCCCCCHH---------HHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCc
Q 030000 86 R----GVSAILYVVDAADRDSVP---------IARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLES 150 (184)
Q Consensus 86 ~----~~~~~i~v~d~~~~~~~~---------~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~ 150 (184)
. .++++++|+|..+...+. .....+...+.. .++|+++|+||+|+.+.. ..+++.+.++...
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 3 457888899986432210 011111222222 479999999999986543 2344444444311
Q ss_pred -cCCCceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 151 -ITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 151 -~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
......+++++||++| |+++++++|.+.+...
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 1111236899999999 9999999999987653
No 141
>PRK15494 era GTPase Era; Provisional
Probab=99.94 E-value=2.1e-25 Score=160.59 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=110.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccc-hhHh-------HHhhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR-FRTM-------WERYC 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~-~~~~-------~~~~~ 85 (184)
.+.++|+++|.+|+|||||+|++.+..+. +...+|.+.....+...+.++.+|||||..+ +... ....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 35679999999999999999999987764 3344555555566777888999999999743 2211 11247
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.++|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+.+. ...+..+.+... .....++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccC
Confidence 78999999999754 455554444433332 34677889999998643 233333333211 1234699999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030000 166 SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~ 182 (184)
|.|++++++++.+.++.
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999999999988764
No 142
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.94 E-value=2.5e-25 Score=149.16 Aligned_cols=157 Identities=18% Similarity=0.137 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC----CCCC-----CCCCccceeEEEEee--------------cCEEEEEEEcCCccc
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG----GYSE-----DMIPTVGFNMRKVTK--------------GNVTIKLWDLGGQRR 76 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~----~~~~-----~~~~t~~~~~~~~~~--------------~~~~~~~~d~~g~~~ 76 (184)
++|+++|++++|||||+++++.. .+.. ....|.+.....+.. .++.+++|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 1111 122444444333332 268899999999987
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH----HHHHHHhCC--Cc
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALVDQLGL--ES 150 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~~~~~~~--~~ 150 (184)
+..........+|++++|+|+.+.........+. +... .+.|+++++||+|+...... ++..+.+.. ..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6555555567889999999998755444332222 1111 25799999999998754332 222222111 01
Q ss_pred cCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 151 ITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.....++++++||++|+|++++++++.+.+.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1224568999999999999999999998775
No 143
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=4e-25 Score=155.16 Aligned_cols=153 Identities=20% Similarity=0.172 Sum_probs=104.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccchh--------HhHHhhccCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR--------TMWERYCRGVS 89 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~~~~ 89 (184)
+|+++|.+|+|||||+|++++.+.. .....|...........+.++.+|||||..... .....+++++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999987653 222233333333344556789999999965321 12334578999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
++++|+|+++..+.. .++...+.. .+.|+++|+||+|+.+..........+... ....+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL---EDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh---cCCCceEEEecCCCCCH
Confidence 999999998876654 222333332 478999999999996433222222222111 11126899999999999
Q ss_pred HHHHHHHHHHhhh
Q 030000 170 DAVIDWLIKHSKT 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++++++.+.++.
T Consensus 153 ~~L~~~l~~~l~~ 165 (270)
T TIGR00436 153 SFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998765
No 144
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.94 E-value=5.2e-25 Score=147.30 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC------------------CccceeEEEEeecCEEEEEEEcCCccchhHhHH
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMI------------------PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE 82 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~------------------~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 82 (184)
+|+++|.+|+|||||++++++........ .+.......+...+..+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999998766544321 222333344556678999999999999888888
Q ss_pred hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH----HHHHHhCCCcc-------
Q 030000 83 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLESI------- 151 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~----~~~~~~~~~~~------- 151 (184)
.+++.+|++++|+|+.++...... ..+... .. .+.|+++++||+|+....... ...+.+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~-~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR-EHLRIA-RE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH-HHHHHH-HH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 889999999999999876544322 222222 22 579999999999997644432 23333332211
Q ss_pred --CCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 152 --TDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 152 --~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.....+++++||++|.|++++++++.+.++.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 2246789999999999999999999998763
No 145
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.94 E-value=8.4e-25 Score=142.07 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccchhH--------hHHhhccCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT--------MWERYCRGV 88 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~ 88 (184)
++|+++|++|+|||||++++++.... .....+.......+...+..+.+|||||...+.. .....+.++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 58999999999999999999976642 1222333344445666778999999999765432 122456789
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|+.++.+......+.. ..+.|+++++||+|+.+.... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998777766543322 357999999999999765433 1223345799999999999
Q ss_pred HHHHHHHHHHHh
Q 030000 169 IDAVIDWLIKHS 180 (184)
Q Consensus 169 i~~l~~~i~~~~ 180 (184)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
No 146
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.94 E-value=8.5e-25 Score=157.67 Aligned_cols=152 Identities=22% Similarity=0.266 Sum_probs=110.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEee-cCEEEEEEEcCCcc---------chhHhHHhhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQR---------RFRTMWERYC 85 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~---------~~~~~~~~~~ 85 (184)
..++|+++|.+|+|||||+|++.+.... ....+|.+.....+.. .+..+.+|||||.. .+.... ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 3489999999999999999999987643 2345677776666666 46789999999972 233322 247
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.++|++++|+|++++.+......+.. ++......+.|+++|+||+|+.+..... .... ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~-~L~~l~~~~~piIlV~NK~Dl~~~~~v~---~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEK-VLEELGAEDIPQLLVYNKIDLLDEPRIE---RLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHH-HHHHhccCCCCEEEEEEeecCCChHhHH---HHHh------CCCCEEEEEccC
Confidence 78999999999999887766544333 3333334578999999999996532221 1111 112589999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030000 166 SINIDAVIDWLIKHS 180 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~ 180 (184)
|.|+++++++|.+.+
T Consensus 337 g~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 337 GEGLDLLLEAIAERL 351 (351)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998753
No 147
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.94 E-value=6.6e-25 Score=147.34 Aligned_cols=157 Identities=25% Similarity=0.311 Sum_probs=106.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--CCCCCCC----------------CCccceeEEEEeecCEEEEEEEcCCccchhHhH
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT--GGYSEDM----------------IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMW 81 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~--~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~ 81 (184)
-+|+++|++++|||||+++++. +.+.... ..|.......+...+..+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999996 4443322 122233334567788999999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCC--ccCCCce
Q 030000 82 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLE--SITDREV 156 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~--~~~~~~~ 156 (184)
..+++++|++++|+|+++.. +.....++..... .++|+++++||+|+..... .++..+.+... ......+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998642 2333333333322 4789999999999865322 12222222110 1122356
Q ss_pred eEEEeeeccCCCH----------HHHHHHHHHHhh
Q 030000 157 CCYMISCKDSINI----------DAVIDWLIKHSK 181 (184)
Q Consensus 157 ~~~~~Sa~~~~~i----------~~l~~~i~~~~~ 181 (184)
+++++||++|.|+ .++.+.|.+.++
T Consensus 158 ~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 158 PVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred CEEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence 8999999999765 455555555443
No 148
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.94 E-value=7e-25 Score=163.59 Aligned_cols=160 Identities=19% Similarity=0.165 Sum_probs=112.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccchhHh-----------HHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM-----------WER 83 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-----------~~~ 83 (184)
..++|+++|.+++|||||++++++... ....+.|.......+...+..+.+|||||..+.... ...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 358999999999999999999997653 222334444444556667778999999997543321 123
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc-cccCHHHHHHHhCCCccCCCceeEEEee
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS-EALSKQALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
+++.+|++++|+|+.++.+..... .+..... .++|+++|+||+|+. +....++..+.+..........+++++|
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 578899999999999876665543 2222222 478999999999997 3233334444433222223456899999
Q ss_pred eccCCCHHHHHHHHHHHhhh
Q 030000 163 CKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~ 182 (184)
|++|.|++++++++.+....
T Consensus 326 A~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887653
No 149
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.94 E-value=7.7e-25 Score=146.27 Aligned_cols=159 Identities=23% Similarity=0.268 Sum_probs=115.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC--------------------CCCCCccceeEEEEe--ecCEEEEEEEcCCcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS--------------------EDMIPTVGFNMRKVT--KGNVTIKLWDLGGQR 75 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~--------------------~~~~~t~~~~~~~~~--~~~~~~~~~d~~g~~ 75 (184)
+..+|+++|+.++|||||+++|+..... ....-|.......+. .....++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 5689999999999999999999943321 112345566666777 889999999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhC-----CCc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG-----LES 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~-----~~~ 150 (184)
.|.......+..+|++|+|+|+.++-... ....+..... .++|+++|+||+|+... ...+..+.+. ...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~----~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE----LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH----TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeecccccccc-cccccccccc----cccceEEeeeeccchhh-hHHHHHHHHHHHhccccc
Confidence 99998889999999999999998764433 3333333322 47899999999999832 2222222111 111
Q ss_pred cCC-CceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 151 ITD-REVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 151 ~~~-~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
... ..++++++||++|.|++++++.+.+.++.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLPS 188 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS--
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCcC
Confidence 112 36799999999999999999999998863
No 150
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.94 E-value=1.3e-24 Score=161.69 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=111.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccchhHh--------HHhhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM--------WERYC 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~ 85 (184)
+..++|+++|.+|+|||||+|++++.+. ......|.+.....+...+..+.+|||||.+++... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 3568999999999999999999998663 223344656666667778889999999998754332 22357
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+++|++++|+|++++.++.....+.. ..+.|+++|+||+|+.+..... .....+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 88999999999998877764433221 3578999999999996543222 11234689999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030000 166 SINIDAVIDWLIKHSK 181 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~ 181 (184)
|.|++++++++.+.+.
T Consensus 355 g~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 355 GEGIDELREAIKELAF 370 (449)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998875
No 151
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.93 E-value=8.9e-25 Score=156.29 Aligned_cols=158 Identities=20% Similarity=0.208 Sum_probs=114.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecC-EEEEEEEcCCccc-------hhHhHHhhccCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGN-VTIKLWDLGGQRR-------FRTMWERYCRGV 88 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~-------~~~~~~~~~~~~ 88 (184)
...|+++|.++||||||++++........ ..+|.......++..+ ..+.+||+||..+ ....+..+++++
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 46799999999999999999997654322 2345556666666666 8899999999642 223344456789
Q ss_pred CEEEEEEeCCCC---CCHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 89 SAILYVVDAADR---DSVPIARSELHELLMKP-SLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 89 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+++++|+|+++. .+++....+..++.... ...+.|+++|+||+|+......++..+.+... ...+++++||+
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~----~~~~vi~iSAk 312 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKA----LGKPVFPISAL 312 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHH----cCCcEEEEEcc
Confidence 999999999876 57777777666654432 12478999999999997654444444333211 12469999999
Q ss_pred cCCCHHHHHHHHHHHh
Q 030000 165 DSINIDAVIDWLIKHS 180 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~ 180 (184)
+++|+++++++|.+.+
T Consensus 313 tg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 313 TGEGLDELLYALAELL 328 (329)
T ss_pred CCcCHHHHHHHHHHHh
Confidence 9999999999998865
No 152
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.93 E-value=4.1e-26 Score=148.82 Aligned_cols=164 Identities=21% Similarity=0.296 Sum_probs=126.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---Ee-ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VT-KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+|++|+|+.++|||+|+-.+..+.|+..+.||...++.. +. ...+.+.+|||+||++|...+...+.++|.+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 46899999999999999999999999999999998855443 42 566889999999999999988888999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc----------cCCCceeEEEeee
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES----------ITDREVCCYMISC 163 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~Sa 163 (184)
||++.++.++++...-|...+++.. +++|+++|++|.|+.+.....+.....+... ....-..+++|||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 9999999999997555544444444 7899999999999974321111111111100 0012256999999
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
++..|+.++|+........
T Consensus 162 ~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhCCcHHHHHHHHHHHhc
Confidence 9999999999988877643
No 153
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=3e-25 Score=142.04 Aligned_cols=134 Identities=21% Similarity=0.221 Sum_probs=92.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCcc-----chhHhHHhhccCCCEEEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR-----RFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~-----~~~~~~~~~~~~~~~~i~v~ 95 (184)
||+++|++|+|||||++++.+..+. +.+|.+..+ .. .+||+||+. .+.... ..++++|++++|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~-----~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~ 70 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY-----ND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQ 70 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE-----cC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEe
Confidence 8999999999999999999877652 334443322 11 689999973 233333 3578999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
|++++.++... .|. ... ..|+++++||+|+.+.. ..++..+..... ...+++++||++|.|++++|+
T Consensus 71 d~~~~~s~~~~-~~~-~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 71 SATDPESRFPP-GFA-SIF------VKPVIGLVTKIDLAEADVDIERAKELLETA----GAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred cCCCCCcCCCh-hHH-Hhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHc----CCCcEEEEecCCCCCHHHHHH
Confidence 99999887542 222 221 24999999999986532 222222222111 112689999999999999999
Q ss_pred HHH
Q 030000 175 WLI 177 (184)
Q Consensus 175 ~i~ 177 (184)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 154
>PLN00023 GTP-binding protein; Provisional
Probab=99.93 E-value=3.4e-25 Score=155.37 Aligned_cols=121 Identities=21% Similarity=0.392 Sum_probs=102.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEee---------------cCEEEEEEEcCCccchh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK---------------GNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~---------------~~~~~~~~d~~g~~~~~ 78 (184)
....+||+++|+.|+|||||++++.++.+...+.+|+|.... .+.. ..+.+++||++|++++.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 345799999999999999999999999998888889886542 2332 34779999999999999
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-----------CCCCcEEEEEeCCCcccc
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS-----------LSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~iivv~nK~D~~~~ 136 (184)
.++..++++++++|+|+|+++..++..+..|+..+..... ..++|+++|+||+|+.+.
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999999999988865421 135899999999999653
No 155
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.93 E-value=3.4e-25 Score=146.62 Aligned_cols=153 Identities=24% Similarity=0.238 Sum_probs=107.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEeec-CEEEEEEEcCCccch-------hHhHHhhccCCCEEEE
Q 030000 24 LIGLQNAGKTSLVNTIATGGY--SEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQRRF-------RTMWERYCRGVSAILY 93 (184)
Q Consensus 24 v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~-------~~~~~~~~~~~~~~i~ 93 (184)
++|++|+|||||++++.+... ......|.......+... +..+.+||+||..+. ...+...++++|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998764 222334555555556666 888999999996321 1122345778999999
Q ss_pred EEeCCCC------CCHHHHHHHHHHHhcCCC------CCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEe
Q 030000 94 VVDAADR------DSVPIARSELHELLMKPS------LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMI 161 (184)
Q Consensus 94 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
|+|+.+. .++.....+...+..... ..+.|+++|+||+|+............. .......+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE---LALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH---HhcCCCCCEEEE
Confidence 9999887 466666666666644322 1479999999999997654433321111 112234569999
Q ss_pred eeccCCCHHHHHHHHHHH
Q 030000 162 SCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~~ 179 (184)
||+++.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999999765
No 156
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.93 E-value=6.4e-25 Score=148.14 Aligned_cols=160 Identities=16% Similarity=0.174 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCCccceeEEEEee---------------------------------
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSE-----DMIPTVGFNMRKVTK--------------------------------- 61 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~-----~~~~t~~~~~~~~~~--------------------------------- 61 (184)
++|+++|+.|+|||||++.+....... ....|....+..+.+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 478999999999999999996431111 111122211111111
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA 141 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~ 141 (184)
....+.+||+||++++...+...+..+|++++|+|+.++.........+..+... ...|+++++||+|+........
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 1267999999999999888888889999999999998642211222222222111 2357999999999975332222
Q ss_pred HHHHhCC--CccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 142 LVDQLGL--ESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 142 ~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..+.+.. .......++++++||++|+|++++++++.+.++.
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 2222111 1111234579999999999999999999988764
No 157
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.93 E-value=2e-24 Score=140.39 Aligned_cols=146 Identities=23% Similarity=0.216 Sum_probs=102.0
Q ss_pred EEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccchhH--------hHHhhccCCCEE
Q 030000 23 SLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT--------MWERYCRGVSAI 91 (184)
Q Consensus 23 ~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~~~~ 91 (184)
+++|.+|+|||||++++++... ......|...........+..+.+|||||...+.. .....++++|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4789999999999999997652 12222344455555667778999999999877543 334567889999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
++|+|+.+..+.... ++..++.. .+.|+++|+||+|+.+..........++ ..+++++|+++|.|+++
T Consensus 81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLG-------FGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcC-------CCCeEEEecccCCCHHH
Confidence 999999765444332 23333332 3599999999999976433211111111 11579999999999999
Q ss_pred HHHHHHHHh
Q 030000 172 VIDWLIKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+++++.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998764
No 158
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=1.9e-24 Score=147.80 Aligned_cols=164 Identities=26% Similarity=0.401 Sum_probs=121.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEee----cCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+||+++|++|||||||++++..+.+...+.+|.+..+..... ..+++.+||++|++++...+..++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34899999999999999999999999998888887755544222 15779999999999999999999999999999
Q ss_pred EEeCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHH-----------hCCCccC-CCceeEEE
Q 030000 94 VVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ-----------LGLESIT-DREVCCYM 160 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~ 160 (184)
|+|..+..++... ..|...+ ......+.|+++++||+|+............ ....... .....+++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l-~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEEL-RELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEecccchhhhHHHHHHHHHH-HHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 9999984454444 5554444 3333357999999999999876432211110 0000000 01223899
Q ss_pred eeec--cCCCHHHHHHHHHHHhhh
Q 030000 161 ISCK--DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 161 ~Sa~--~~~~i~~l~~~i~~~~~~ 182 (184)
+|++ ++.++++++..+...+.+
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHH
Confidence 9999 999999999998887753
No 159
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.93 E-value=5.2e-25 Score=142.10 Aligned_cols=152 Identities=28% Similarity=0.451 Sum_probs=114.6
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEee----cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC
Q 030000 24 LIGLQNAGKTSLVNTIATGGY-SEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 24 v~G~~~~GKstli~~~~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
++|++|+|||||++++.+... .....+|. ........ ....+.+||+||+..+...+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 44444444 44444433 3788999999999988888888899999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 99 DRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
++.+......++..........+.|+++++||+|+.............. .......+++++|++++.|+.+++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQ--LAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHH--HHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 9888887777644444445557899999999999976554433210000 11223457999999999999999999863
No 160
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.93 E-value=8.1e-24 Score=156.63 Aligned_cols=151 Identities=23% Similarity=0.283 Sum_probs=108.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC--C-CCCCCccceeEEEEeecCEEEEEEEcCCccchhHh--------HHhh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGY--S-EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM--------WERY 84 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~--~-~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~ 84 (184)
.++.++|+++|++|+|||||+|++++... . ...+.|.......+...+..+.+|||||+.+.... ...+
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 34679999999999999999999997653 2 22233444555567778889999999998654432 2356
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++++|++++|+|++++.++... |+.... ..++|+++|+||+|+... +.+.+.+. ...+++.+|++
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV~NK~Dl~~~-~~~~~~~~--------~~~~~~~vSak 344 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILVLNKIDLKIN-SLEFFVSS--------KVLNSSNLSAK 344 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEEEECccCCCc-chhhhhhh--------cCCceEEEEEe
Confidence 7899999999999988877654 444332 246899999999998643 22222221 12358899999
Q ss_pred cCCCHHHHHHHHHHHhhh
Q 030000 165 DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~ 182 (184)
+ .||+++++.+.+.+.+
T Consensus 345 ~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 345 Q-LKIKALVDLLTQKINA 361 (442)
T ss_pred c-CCHHHHHHHHHHHHHH
Confidence 8 6899998888877643
No 161
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=4.2e-25 Score=140.72 Aligned_cols=142 Identities=26% Similarity=0.344 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecCEEEEEEEcCCccch------hHhHHhhc--cCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRF------RTMWERYC--RGVS 89 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~------~~~~~~~~--~~~~ 89 (184)
++|+++|.|++|||||+|++++.+.... ++.|.......+...+..+.++|+||.-.. ......++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 5899999999999999999998875433 445777777778888999999999993221 12223333 5899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc----CHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++++|+|+++ ++.......++.. .++|+++++||+|..... +.+.+.+.++. |++.+||++
T Consensus 81 ~ii~VvDa~~---l~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~--------pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATN---LERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV--------PVIPVSART 145 (156)
T ss_dssp EEEEEEEGGG---HHHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS---------EEEEBTTT
T ss_pred EEEEECCCCC---HHHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC--------CEEEEEeCC
Confidence 9999999976 3333333333433 379999999999998754 45667776654 699999999
Q ss_pred CCCHHHHHHHH
Q 030000 166 SINIDAVIDWL 176 (184)
Q Consensus 166 ~~~i~~l~~~i 176 (184)
++|++++.+.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
No 162
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=3.3e-24 Score=160.93 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=108.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccc--------hhHhHHhhcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWERYCR 86 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~ 86 (184)
...+|+++|.+|+|||||++++++.... ...+.|.......+...+..+.+|||||.+. +......+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 3478999999999999999999976542 2222344445555667778899999999763 3344556788
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.+|++++|+|+++..+... ..+...+.. .++|+++|+||+|+..... +..+..... . . ..+++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g-~---~-~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSLG-L---G-EPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhcC-C---C-CeEEEEcCCC
Confidence 9999999999998766543 223333332 4799999999999864321 111111111 1 1 2478999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030000 167 INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~ 182 (184)
.|++++++++.+.+.+
T Consensus 185 ~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 185 RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcHHHHHHHHhhccc
Confidence 9999999999988754
No 163
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.93 E-value=1.2e-26 Score=146.39 Aligned_cols=157 Identities=25% Similarity=0.417 Sum_probs=133.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+.-+|++|+|..++||||++++++.+-|...+..|++.++.. +..+++.+.+||++|++++......+++++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 356999999999999999999999999999999999976654 5566778889999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-----HHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-----KQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+||+.+|..+|+....|...+.+.. ..+|.++|-||+|+.+... .+-..+.+ +..++-+|++...
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l--------~~RlyRtSvked~ 167 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL--------HKRLYRTSVKEDF 167 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHh--------hhhhhhhhhhhhh
Confidence 9999999999999999999986653 4899999999999976432 22233333 2347889999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030000 168 NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~~ 183 (184)
|+...|.++++.+.++
T Consensus 168 NV~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 168 NVMHVFAYLAEKLTQQ 183 (246)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999887653
No 164
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.93 E-value=1.7e-24 Score=140.93 Aligned_cols=147 Identities=24% Similarity=0.253 Sum_probs=103.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEeecCEEEEEEEcCCccchhH------hHHhhc--cCCCEEEE
Q 030000 24 LIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRRFRT------MWERYC--RGVSAILY 93 (184)
Q Consensus 24 v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~~~~~~i~ 93 (184)
++|.+|+|||||++++.+........ .|.......++..+..+.+|||||+..+.. ....++ +++|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999876443333 355555566777778899999999876543 244455 48999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|+|+.+..... .++..+.. .++|+++++||+|+.+........+.+.. ..+.+++++|+++|.|+.+++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSE----LLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHH----hhCCCeEEEEccCCCCHHHHH
Confidence 99998754322 23333322 36899999999999764332221221111 112469999999999999999
Q ss_pred HHHHHHhh
Q 030000 174 DWLIKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
+++.+..+
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988754
No 165
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.93 E-value=3.7e-24 Score=144.24 Aligned_cols=157 Identities=24% Similarity=0.297 Sum_probs=113.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe----ecCEEEEEEEcCCccchhHhHHhhccCC-CEEEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQRRFRTMWERYCRGV-SAILYVV 95 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~d~~g~~~~~~~~~~~~~~~-~~~i~v~ 95 (184)
+|+++|++|||||||++++..+.+.....++ ......+. .....+.+||+||+.+++..+..+++++ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988776555443 22332222 2467899999999999999888899998 9999999
Q ss_pred eCCCC-CCHHHHHHHHHHHhcCC--CCCCCcEEEEEeCCCcccccCHHHHHHHhC-------------C-----------
Q 030000 96 DAADR-DSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSEALSKQALVDQLG-------------L----------- 148 (184)
Q Consensus 96 d~~~~-~~~~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~~~~~~~~~~~-------------~----------- 148 (184)
|+.+. .++.....++..++... ...++|+++++||+|+......+.+.+.+. +
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~ 160 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE 160 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99887 66777766666554322 225899999999999876543322111110 0
Q ss_pred -----------CccCCCceeEEEeeeccCC-CHHHHHHHHHH
Q 030000 149 -----------ESITDREVCCYMISCKDSI-NIDAVIDWLIK 178 (184)
Q Consensus 149 -----------~~~~~~~~~~~~~Sa~~~~-~i~~l~~~i~~ 178 (184)
.......+.++++|++.+. |++++.+||.+
T Consensus 161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0001136788999998876 69999999875
No 166
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=1.8e-23 Score=137.98 Aligned_cols=156 Identities=20% Similarity=0.138 Sum_probs=105.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccchh-----------HhHHhh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-----------TMWERY 84 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~~~~~~ 84 (184)
.++|+++|++|+|||||++++++.... .....+.......+...+..+.+||+||..+.. ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 578999999999999999999876532 112223333334455566778999999964321 111234
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--cCHHHHHHHhCCCccCCCceeEEEee
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
+.++|++++|+|+.++.+..... .+..... .+.|+++++||+|+... ...+...+.+..........+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLR-IAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHH-HHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 67899999999998887765432 2222221 36899999999999765 33333333332221112345799999
Q ss_pred eccCCCHHHHHHHHHHH
Q 030000 163 CKDSINIDAVIDWLIKH 179 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~ 179 (184)
|++++|+.++++++.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 167
>PTZ00099 rab6; Provisional
Probab=99.92 E-value=6.2e-24 Score=139.96 Aligned_cols=136 Identities=21% Similarity=0.368 Sum_probs=106.8
Q ss_pred CCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCC
Q 030000 42 GGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKP 117 (184)
Q Consensus 42 ~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 117 (184)
+.|...+.+|.+..+.. +....+.+.+|||||++++...+..+++++|++++|+|++++.+|.....|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677788899866643 33456889999999999999999999999999999999999999999999988886653
Q ss_pred CCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 118 SLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 118 ~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
. .++|+++|+||+|+.+.. ...+...... .....++++||++|+||+++|++|.+.+.+.
T Consensus 83 ~-~~~piilVgNK~DL~~~~~v~~~e~~~~~~-----~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 83 G-KDVIIALVGNKTDLGDLRKVTYEEGMQKAQ-----EYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred C-CCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3 568999999999986422 2222222111 1234689999999999999999999988653
No 168
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=1.1e-23 Score=156.25 Aligned_cols=161 Identities=22% Similarity=0.208 Sum_probs=113.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEeecCEEEEEEEcCCccch-------hHhHHhhccCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF-------RTMWERYCRGV 88 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~-------~~~~~~~~~~~ 88 (184)
--..|+++|.++||||||+++|.+.+... .+.+|.......++..+..+.+||+||.... ......+++++
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 34789999999999999999999765432 2345777777788888899999999995321 12233457789
Q ss_pred CEEEEEEeCCCC----CCHHHHHHHHHHHhcCC----------CCCCCcEEEEEeCCCcccccCHHHH-HHHhCCCccCC
Q 030000 89 SAILYVVDAADR----DSVPIARSELHELLMKP----------SLSGIPLLVLGNKIDKSEALSKQAL-VDQLGLESITD 153 (184)
Q Consensus 89 ~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~~iivv~nK~D~~~~~~~~~~-~~~~~~~~~~~ 153 (184)
+++++|+|+++. +.+.....+..++..+. ...+.|.++|+||+|+.+.....+. .+.+. .
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~-----~ 312 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE-----A 312 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH-----H
Confidence 999999999753 34444444433343322 2347899999999999654332222 22221 1
Q ss_pred CceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 154 REVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
..++++++||++++|+++++++|.+.+...
T Consensus 313 ~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 313 RGWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 245799999999999999999999888653
No 169
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.92 E-value=9.7e-24 Score=142.01 Aligned_cols=162 Identities=20% Similarity=0.240 Sum_probs=105.2
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEeecCEEEEEEEcCCc----------cchhHhHHh
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGGQ----------RRFRTMWER 83 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~d~~g~----------~~~~~~~~~ 83 (184)
+....++|+++|++|+|||||+++++++.+.....++.+.... .....+.++.+||+||. +.+......
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 4456789999999999999999999987644444444332111 11112468999999994 334444444
Q ss_pred hccC---CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEE
Q 030000 84 YCRG---VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 84 ~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
++.. ++++++|+|..++..... .++...+.. .++|+++++||+|+.+....+...+.+... ......++++
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l~~~~~~~~~ 173 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKA-LKFGDDEVIL 173 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHH-HHhcCCceEE
Confidence 4544 467888899876544332 222233322 468999999999997654443333222111 1111457899
Q ss_pred eeeccCCCHHHHHHHHHHHhhh
Q 030000 161 ISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+||++|.|++++++.|.+.+..
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999988764
No 170
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=2.7e-23 Score=152.28 Aligned_cols=156 Identities=20% Similarity=0.261 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEeec-CEEEEEEEcCCccc-------hhHhHHhhccCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKG-NVTIKLWDLGGQRR-------FRTMWERYCRGVS 89 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~-------~~~~~~~~~~~~~ 89 (184)
..|+++|.++||||||++++.+.+... .+.+|.......+... +..+.+||+||..+ ....+..++++++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 489999999999999999999766432 2334666666666665 68899999999632 1223334567799
Q ss_pred EEEEEEeCCCC---CCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 90 AILYVVDAADR---DSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 90 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++++|+|+++. +++.....+..++..+.. ..++|.++|+||+|+.... ..+++.+.+. .+++++||+
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~ 310 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISAL 310 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCC
Confidence 99999999764 566666666555544322 2478999999999984321 1122222222 368999999
Q ss_pred cCCCHHHHHHHHHHHhhhc
Q 030000 165 DSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~~ 183 (184)
+++|++++++++.+.+.+.
T Consensus 311 tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 311 TGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 9999999999999887653
No 171
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.92 E-value=4.7e-24 Score=138.43 Aligned_cols=142 Identities=19% Similarity=0.211 Sum_probs=95.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCcc----chhHhHHhhccCCCEEEEEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR----RFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~----~~~~~~~~~~~~~~~~i~v~d 96 (184)
+|+++|++|+|||||++++.+.. .. ..+|.+..+. .. .+||+||.. ++.......++++|++++|+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~-~~~~~~v~~~---~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d 73 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TL-ARKTQAVEFN---DK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHG 73 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-cc-CccceEEEEC---CC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEe
Confidence 79999999999999999987543 21 1223222221 11 269999962 232233344789999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
+++..++.. .++... ..+.|+++++||+|+.. .+.+...+.+.... ...+++++||++|+|++++++++
T Consensus 74 ~~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~~---~~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 74 ANDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPD-ADVAATRKLLLETG---FEEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred CCCcccccC--HHHHhc-----cCCCCeEEEEEccccCc-ccHHHHHHHHHHcC---CCCCEEEEECCCccCHHHHHHHH
Confidence 998776532 333332 13679999999999854 33333333322111 12479999999999999999999
Q ss_pred HHHhhh
Q 030000 177 IKHSKT 182 (184)
Q Consensus 177 ~~~~~~ 182 (184)
.+.+.+
T Consensus 143 ~~~~~~ 148 (158)
T PRK15467 143 ASLTKQ 148 (158)
T ss_pred HHhchh
Confidence 988754
No 172
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.92 E-value=2.6e-23 Score=162.68 Aligned_cols=160 Identities=17% Similarity=0.117 Sum_probs=114.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccc----------hhHh-HHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR----------FRTM-WER 83 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~-~~~ 83 (184)
..++|+++|.+|+|||||++++++... ....+.|.+.....+...+..+.+|||||..+ +... ...
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 358999999999999999999998764 22233455555555667777889999999532 2111 123
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++++|++++|+|+++..+...... +..+.. .++|+++|+||+|+.+....+...+.+..........+++++||
T Consensus 529 ~i~~advvilViDat~~~s~~~~~i-~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLKV-MSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 4788999999999998887776543 333322 47899999999999764443344333322211233457899999
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
++|.|++++++.+.+.+.+
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988765
No 173
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.92 E-value=4.4e-23 Score=157.63 Aligned_cols=154 Identities=20% Similarity=0.249 Sum_probs=111.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC-------CCCCC----------CCccceeEEEEe-----ecCEEEEEEEcCCccc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGG-------YSEDM----------IPTVGFNMRKVT-----KGNVTIKLWDLGGQRR 76 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~-------~~~~~----------~~t~~~~~~~~~-----~~~~~~~~~d~~g~~~ 76 (184)
.-+|+++|+.++|||||+++++... +...+ +.|+......+. ...+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3579999999999999999998642 11111 112222222232 2348899999999999
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCccCC
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESITD 153 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~ 153 (184)
|...+..+++.+|++++|+|+++..+.+....|.... . .++|+++|+||+|+..... .+++.+.++.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~----- 152 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGL----- 152 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCC-----
Confidence 9999999999999999999999877777665554432 2 3689999999999864321 1233333322
Q ss_pred CceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 154 REVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
....++++||++|.|+++++++|.+.++.
T Consensus 153 ~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 153 DASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred CcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 11258999999999999999999988764
No 174
>PRK11058 GTPase HflX; Provisional
Probab=99.91 E-value=8.3e-23 Score=150.52 Aligned_cols=154 Identities=24% Similarity=0.267 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEeecCE-EEEEEEcCCccch--hHhH------HhhccCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGNV-TIKLWDLGGQRRF--RTMW------ERYCRGV 88 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~--~~~~------~~~~~~~ 88 (184)
.+|+++|.+|+|||||+|++.+.+... ....|.+.....+...+. .+.+|||||..+. ...+ ...++++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 689999999999999999999766432 234566666656655543 7899999997331 1222 2336789
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCcee-EEEeeeccCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVC-CYMISCKDSI 167 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 167 (184)
|++++|+|++++.++.....+.. ++......++|+++|+||+|+.+.... .. .... ...+ ++++||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~-iL~el~~~~~pvIiV~NKiDL~~~~~~-~~-~~~~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNT-VLEEIDAHEIPTLLVMNKIDMLDDFEP-RI-DRDE------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHH-HHHHhccCCCCEEEEEEcccCCCchhH-HH-HHHh------cCCCceEEEeCCCCC
Confidence 99999999999877766543322 333333357999999999998643211 11 1110 0112 5789999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
|+++++++|.+.+..
T Consensus 349 GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 349 GIPLLFQALTERLSG 363 (426)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999988753
No 175
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=4.5e-23 Score=154.05 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=111.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccchhH-----------hHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT-----------MWER 83 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~~ 83 (184)
..++|+++|.+|+|||||++++++.... ...+.|.......+...+..+.+|||||..+... ....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 5699999999999999999999976531 1222344444445566778899999999643211 1223
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++.+|++++|+|++++.+..... .+..... .++|+++++||+|+.+....++..+.+..........+++++||
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 578899999999999876665443 2222222 46899999999999754434444444432222234568999999
Q ss_pred ccCCCHHHHHHHHHHHhh
Q 030000 164 KDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~ 181 (184)
++|.|++++++.+.+...
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887654
No 176
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.91 E-value=5.4e-23 Score=156.50 Aligned_cols=156 Identities=21% Similarity=0.271 Sum_probs=110.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCE-EEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNV-TIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~-~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+..+|+++|++++|||||++++.+..+.....+ |.......+...+. .+.+|||||++.|..++...+..+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4568999999999999999999998776554332 33333344444333 89999999999999999888999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc----cCCCceeEEEeeeccCCCH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES----ITDREVCCYMISCKDSINI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~i 169 (184)
|+|+++....+.... +... ...++|+++++||+|+... ..++..+.+.... ......+++++||++|+|+
T Consensus 165 VVda~dgv~~qT~e~-i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVMPQTIEA-ISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCCHhHHHH-HHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 999987543333322 2222 2247999999999998642 2233333322111 1112357999999999999
Q ss_pred HHHHHHHHH
Q 030000 170 DAVIDWLIK 178 (184)
Q Consensus 170 ~~l~~~i~~ 178 (184)
+++++++..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999864
No 177
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.91 E-value=7.7e-23 Score=134.00 Aligned_cols=154 Identities=23% Similarity=0.217 Sum_probs=103.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC---CCccceeEEEEeecCEEEEEEEcCCccchhH--------hHHhhccC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDM---IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT--------MWERYCRG 87 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~ 87 (184)
..+|+++|++|+|||||++++.+....... ..+.......+......+.+||+||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999876542211 1222222333455668899999999654322 23445788
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc-ccCHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALSKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+|++++|+|+.++.. ....++...+.. .+.|+++++||+|+.. .....+..+.+... ....+++.+|++++
T Consensus 83 ~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~ 154 (168)
T cd04163 83 VDLVLFVVDASEPIG--EGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALKG 154 (168)
T ss_pred CCEEEEEEECCCccC--chHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEeccC
Confidence 999999999987622 222233333222 3689999999999973 33334333333221 22357899999999
Q ss_pred CCHHHHHHHHHHHh
Q 030000 167 INIDAVIDWLIKHS 180 (184)
Q Consensus 167 ~~i~~l~~~i~~~~ 180 (184)
.|+++++++|.+.+
T Consensus 155 ~~~~~l~~~l~~~~ 168 (168)
T cd04163 155 ENVDELLEEIVKYL 168 (168)
T ss_pred CChHHHHHHHHhhC
Confidence 99999999998764
No 178
>PRK00089 era GTPase Era; Reviewed
Probab=99.91 E-value=6.2e-23 Score=145.90 Aligned_cols=157 Identities=22% Similarity=0.205 Sum_probs=105.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCcccee-EEEEeecCEEEEEEEcCCccchh--------HhHHhhcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFN-MRKVTKGNVTIKLWDLGGQRRFR--------TMWERYCR 86 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~-~~~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~ 86 (184)
+.-.|+++|++|||||||+|++++...... ...|.... .......+.++.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 456799999999999999999998765321 12222222 22233456899999999964432 22334578
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc-ccCHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALSKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++|++++|+|+++. +.....++...+. ..+.|+++|+||+|+.. ........+.+... ....+++++||++
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCC
Confidence 89999999999873 2223333333333 24689999999999973 23333333333221 1234689999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030000 166 SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~ 182 (184)
|.|++++++++.+.++.
T Consensus 156 ~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 156 GDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999988754
No 179
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.91 E-value=2.2e-23 Score=138.30 Aligned_cols=148 Identities=22% Similarity=0.294 Sum_probs=95.8
Q ss_pred hhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCc----cceeEEEEeecCEEEEEEEcCCcc----------ch
Q 030000 12 RSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPT----VGFNMRKVTKGNVTIKLWDLGGQR----------RF 77 (184)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~d~~g~~----------~~ 77 (184)
...+..+.++|+++|++|+|||||++++++..+.....++ ........+ ..+.+||+||.. .+
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~ 87 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEKEKW 87 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHHHHH
Confidence 3445567899999999999999999999987643333333 333333222 268999999942 23
Q ss_pred hHhHHhhcc---CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH----HHHHHHhCCCc
Q 030000 78 RTMWERYCR---GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALVDQLGLES 150 (184)
Q Consensus 78 ~~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~~~~~~~~~ 150 (184)
......+++ .++++++|+|+.++.+.... .+...+.. .++|+++++||+|+.+..+. +++.+.+...
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~- 161 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD- 161 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc-
Confidence 333334444 46899999999875554443 22223322 47899999999999754333 2233333221
Q ss_pred cCCCceeEEEeeeccCCCHH
Q 030000 151 ITDREVCCYMISCKDSINID 170 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~i~ 170 (184)
....+++++||++|+|++
T Consensus 162 --~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 --ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred --cCCCceEEEECCCCCCCC
Confidence 233479999999999973
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.91 E-value=8.3e-23 Score=159.01 Aligned_cols=156 Identities=22% Similarity=0.293 Sum_probs=112.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.+...|+++|+.++|||||+++|..+.+...... |.......+...+..+++|||||++.|..++...+..+|++++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILV 367 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLV 367 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEE
Confidence 4678999999999999999999987766543322 33333344566678999999999999999999889999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhC---C-CccCCCceeEEEeeeccCCCHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG---L-ESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+++....+.... +... ...++|+++++||+|+... +.+.....+. . .......++++++||++|+|++
T Consensus 368 VdAddGv~~qT~e~-i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~ 441 (787)
T PRK05306 368 VAADDGVMPQTIEA-INHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID 441 (787)
T ss_pred EECCCCCCHhHHHH-HHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence 99987543333222 2222 2257999999999999653 2222222221 1 0111234689999999999999
Q ss_pred HHHHHHHH
Q 030000 171 AVIDWLIK 178 (184)
Q Consensus 171 ~l~~~i~~ 178 (184)
+++++|..
T Consensus 442 eLle~I~~ 449 (787)
T PRK05306 442 ELLEAILL 449 (787)
T ss_pred HHHHhhhh
Confidence 99999874
No 181
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.91 E-value=5.9e-23 Score=133.58 Aligned_cols=152 Identities=25% Similarity=0.200 Sum_probs=106.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCCC-CCCC--CccceeEEEEeec-CEEEEEEEcCCccchhH-------hHHhhccCCCEEE
Q 030000 24 LIGLQNAGKTSLVNTIATGGYS-EDMI--PTVGFNMRKVTKG-NVTIKLWDLGGQRRFRT-------MWERYCRGVSAIL 92 (184)
Q Consensus 24 v~G~~~~GKstli~~~~~~~~~-~~~~--~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~-------~~~~~~~~~~~~i 92 (184)
++|++|||||||++++.+.... .... .+........... ...+.+||+||...... ....++.++|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999876544 2222 2323333333333 67899999999765532 3445778999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|+|+.+........ +.... ...+.|+++++||+|+..........+............+++++|++++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999887776655 22222 2258999999999999876655544322222233445678999999999999999
Q ss_pred HHHHHHHh
Q 030000 173 IDWLIKHS 180 (184)
Q Consensus 173 ~~~i~~~~ 180 (184)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
No 182
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=1.2e-22 Score=151.55 Aligned_cols=150 Identities=24% Similarity=0.280 Sum_probs=108.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCc--------cchhHhHHhhccCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ--------RRFRTMWERYCRGVS 89 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~--------~~~~~~~~~~~~~~~ 89 (184)
+|+++|.+|+|||||+|++.+.... ...+.|.......+...+..+.+|||||. +.+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999976632 22334555666667778889999999996 344455666788999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
++++|+|+.++.+... ..+..+++. .++|+++|+||+|+............++. .+++++||++|.|+
T Consensus 81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg~-------~~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLGF-------GEPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcCC-------CCeEEEeCCcCCCh
Confidence 9999999977544332 333334333 47899999999998654322111111111 15899999999999
Q ss_pred HHHHHHHHHHhhh
Q 030000 170 DAVIDWLIKHSKT 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
+++++++.+.+..
T Consensus 149 ~~ll~~i~~~l~~ 161 (429)
T TIGR03594 149 GDLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999988754
No 183
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.5e-22 Score=151.32 Aligned_cols=148 Identities=22% Similarity=0.236 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccc--------hhHhHHhhccCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWERYCRGV 88 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~~~ 88 (184)
++|+++|.+|+|||||++++.+... ....+.|.......+...+..+.+|||||+.. .......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5899999999999999999997763 22223355556666777789999999999876 233345567899
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|+.++.+.. ..++..++.. .+.|+++|+||+|+.+.. ....+..... ...++++||++|.|
T Consensus 82 d~il~vvd~~~~~~~~--~~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~lg-----~~~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLTPA--DEEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYSLG-----LGEPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCCHH--HHHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHhcC-----CCCCEEEEeeCCCC
Confidence 9999999998754433 2233333333 378999999999975422 1222222111 11378999999999
Q ss_pred HHHHHHHHHHH
Q 030000 169 IDAVIDWLIKH 179 (184)
Q Consensus 169 i~~l~~~i~~~ 179 (184)
++++++++.+.
T Consensus 150 v~~l~~~I~~~ 160 (435)
T PRK00093 150 IGDLLDAILEE 160 (435)
T ss_pred HHHHHHHHHhh
Confidence 99999999873
No 184
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.91 E-value=1.7e-22 Score=156.05 Aligned_cols=159 Identities=20% Similarity=0.268 Sum_probs=112.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--Ccc--ceeEEEEee--cCEEEEEEEcCCccchhHhHHhhccCCC
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTV--GFNMRKVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVS 89 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~--~~~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 89 (184)
..+...|+++|++++|||||++++....+..... .|. +.....+.. .+..+.+|||||++.|..++...+..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3567899999999999999999999776654322 222 222222222 4589999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCC----ccCCCceeEEEeeecc
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE----SITDREVCCYMISCKD 165 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~ 165 (184)
++++|+|+.+....+.... +..+ ...++|+++++||+|+... ..++..+.+... ......++++++||++
T Consensus 321 iaILVVDA~dGv~~QT~E~-I~~~----k~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEA-INYI----QAANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEEECcCCCChhhHHH-HHHH----HhcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999987544333222 2222 2257899999999998653 223333322111 1112246899999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030000 166 SINIDAVIDWLIKHS 180 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~ 180 (184)
|.|++++++++....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999987643
No 185
>COG1159 Era GTPase [General function prediction only]
Probab=99.90 E-value=1.9e-22 Score=138.18 Aligned_cols=157 Identities=24% Similarity=0.197 Sum_probs=112.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccch--------hHhHHhhcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF--------RTMWERYCR 86 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~--------~~~~~~~~~ 86 (184)
+.--|+++|.|++|||||+|++++.+.. +...+|.......+..++.++.++||||..+- .......+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 4567899999999999999999988753 23333444445556677899999999994332 223334578
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++|++++|+|+++.... ...+....++. .+.|+++++||+|...+.. .....+.+... .....++++||++
T Consensus 85 dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~---~~f~~ivpiSA~~ 156 (298)
T COG1159 85 DVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL---LPFKEIVPISALK 156 (298)
T ss_pred cCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh---CCcceEEEeeccc
Confidence 89999999999764332 33333333333 4689999999999887665 34444444322 2223799999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030000 166 SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~ 182 (184)
|.|++.+.+.+.+.++.
T Consensus 157 g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 157 GDNVDTLLEIIKEYLPE 173 (298)
T ss_pred cCCHHHHHHHHHHhCCC
Confidence 99999999999998865
No 186
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.90 E-value=3.8e-22 Score=127.06 Aligned_cols=155 Identities=26% Similarity=0.374 Sum_probs=123.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC------------CCCCCccceeEEEEeecC-EEEEEEEcCCccchhHhHHhh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS------------EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRFRTMWERY 84 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~------------~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~ 84 (184)
...||+|.|+.++||||+++++...... .....|..+++......+ ..+.+++||||++|..+|..+
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l 88 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEIL 88 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHH
Confidence 5689999999999999999999855421 112246667777766555 889999999999999999999
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
.+.+.++|+++|.+.+..+ .. ..+..++.... .+|++|++||.|+.+....+++.+.+.... ...+++..+|.
T Consensus 89 ~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~a~ 161 (187)
T COG2229 89 SRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEIDAT 161 (187)
T ss_pred hCCcceEEEEEecCCCcch-HH-HHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeeecc
Confidence 9999999999999998888 22 22333333322 299999999999999988888888887653 45689999999
Q ss_pred cCCCHHHHHHHHHHH
Q 030000 165 DSINIDAVIDWLIKH 179 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~ 179 (184)
++++..+.++.+...
T Consensus 162 e~~~~~~~L~~ll~~ 176 (187)
T COG2229 162 EGEGARDQLDVLLLK 176 (187)
T ss_pred cchhHHHHHHHHHhh
Confidence 999999998887765
No 187
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2.6e-22 Score=146.40 Aligned_cols=161 Identities=20% Similarity=0.230 Sum_probs=112.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecC-EEEEEEEcCCccc-------hhHhHHhhccCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGN-VTIKLWDLGGQRR-------FRTMWERYCRGVS 89 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~-------~~~~~~~~~~~~~ 89 (184)
..|+++|.++||||||+|++.+.+.... +.+|.......+...+ ..+.++|+||..+ .......++++++
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 4799999999999999999997664322 3346666666676664 5699999999643 1222334688899
Q ss_pred EEEEEEeCC---CCCCHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 90 AILYVVDAA---DRDSVPIARSELHELLMKP-SLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 90 ~~i~v~d~~---~~~~~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++++|+|++ +.+.+.....+...+.... ...+.|+++|+||+|+.......+..+.+... .....+++.+||++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~t 317 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAAS 317 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCC
Confidence 999999987 4556666666666554431 12368999999999996544333222222111 01112589999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030000 166 SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~ 182 (184)
+.|+++++++|.+.++.
T Consensus 318 g~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 318 GLGVKELCWDLMTFIEE 334 (390)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999998865
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.90 E-value=2e-22 Score=153.90 Aligned_cols=158 Identities=20% Similarity=0.192 Sum_probs=110.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC---CCCCC--CCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG---YSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~---~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.|+++|++++|||||++++.+.. +..+. +.|....+..+...+..+.+||+||+++|...+...+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999998633 32222 3344555555666778999999999999999888889999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCHHHHHHHhCC--CccC-CCceeEEEeeeccCCCHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSKQALVDQLGL--ESIT-DREVCCYMISCKDSINID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+++....+. ...+. ++.. .++| +++|+||+|+.+....+...+.+.. .... ....+++++||++|+|++
T Consensus 81 VDa~~G~~~qT-~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 81 VDADEGVMTQT-GEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EECCCCCcHHH-HHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 99987432222 22222 2222 3577 9999999999764432222211111 0011 124689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+..
T Consensus 156 eL~~~L~~l~~~ 167 (581)
T TIGR00475 156 ELKKELKNLLES 167 (581)
T ss_pred hHHHHHHHHHHh
Confidence 999998876653
No 189
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.90 E-value=2.2e-22 Score=134.34 Aligned_cols=146 Identities=17% Similarity=0.128 Sum_probs=99.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC------------------CCCCCCccceeEEEEeecCEEEEEEEcCCccchhHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGY------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 80 (184)
+++|+++|+.++|||||+++|+.... ....+.|.......++..+.++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 58999999999999999999985310 012223444444556677889999999999998888
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCH-H----HHHHHhCCCccCCC
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-Q----ALVDQLGLESITDR 154 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 154 (184)
....+..+|++++|+|+...-... ....+..+ .. .++| +++++||+|+...... + ++.+.+........
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~-~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLA-RQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHH-HH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 888889999999999997643222 22222322 22 3566 7789999998643221 1 22222222222234
Q ss_pred ceeEEEeeeccCCCH
Q 030000 155 EVCCYMISCKDSINI 169 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~i 169 (184)
.++++++||++|.|+
T Consensus 157 ~v~iipiSa~~g~n~ 171 (195)
T cd01884 157 NTPIVRGSALKALEG 171 (195)
T ss_pred CCeEEEeeCccccCC
Confidence 678999999999985
No 190
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.90 E-value=1.3e-22 Score=150.93 Aligned_cols=155 Identities=19% Similarity=0.146 Sum_probs=104.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCCCCCccceeEEEEeec
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGY---------------------------------SEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~---------------------------------~~~~~~t~~~~~~~~~~~ 62 (184)
.+++++|+++|++++|||||+++|+...- ....+.|.......++..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 45789999999999999999999983211 012344666666778888
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--H-
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--K- 139 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~- 139 (184)
++.+.+|||||++++.......+..+|++++|+|+++...+.....+...+.... ...|+++++||+|+.+... .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 9999999999999887766666789999999999987322222222222222221 2246999999999965211 1
Q ss_pred ---HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 140 ---QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 140 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+++.+.+.........++++++||++|+|+++.
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 222222222222223467999999999999873
No 191
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.90 E-value=3.5e-22 Score=152.87 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=110.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------CCCCccceeEEEE-----eecCEEEEEEEcCCcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGG--YSE---------------DMIPTVGFNMRKV-----TKGNVTIKLWDLGGQR 75 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~--~~~---------------~~~~t~~~~~~~~-----~~~~~~~~~~d~~g~~ 75 (184)
+..+|+++|+.++|||||+.+++... +.. ..+.|+......+ +..++.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 44689999999999999999998531 110 1122322222223 2346899999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH---HHHHHHhCCCccC
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK---QALVDQLGLESIT 152 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 152 (184)
+|...+..+++.+|++++|+|+++.........+... .. .++|+++|+||+|+...... +++.+.++.
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~-~~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~---- 156 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA-LE----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGI---- 156 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCC----
Confidence 9999999999999999999999887665554444332 21 46899999999998643221 223332222
Q ss_pred CCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 153 DREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
....++++||++|.|+++++++|.+.++.
T Consensus 157 -~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 157 -DASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred -CcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 12358999999999999999999988764
No 192
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=1.4e-23 Score=130.40 Aligned_cols=110 Identities=25% Similarity=0.511 Sum_probs=81.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC----C--CCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYS----E--DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~----~--~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
||+|+|++|||||||++++.+..+. . ....+..............+.+||++|++.+...+...+.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988776 1 111233333344445555699999999998888777779999999999
Q ss_pred EeCCCCCCHHHHHHH---HHHHhcCCCCCCCcEEEEEeCCC
Q 030000 95 VDAADRDSVPIARSE---LHELLMKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~iivv~nK~D 132 (184)
||++++.++..+..+ +..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999887554 3333221 24599999999998
No 193
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.90 E-value=1e-22 Score=151.44 Aligned_cols=154 Identities=18% Similarity=0.135 Sum_probs=103.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc--CCCC-------------------------------CCCCCccceeEEEEeec
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT--GGYS-------------------------------EDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~--~~~~-------------------------------~~~~~t~~~~~~~~~~~ 62 (184)
.++.++|+++|+.++|||||+++|+. +... ...+.|.+.....+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45679999999999999999999984 2111 11233555556667778
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccC--H
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALS--K 139 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~ 139 (184)
++.+.+||+||+++|.......+..+|++++|+|+++.++..... .+...+.... ...|+++++||+|+.+... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence 899999999999998877777788999999999998874331111 1111122221 2357999999999964211 1
Q ss_pred ----HHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 140 ----QALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 140 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+++.+.+.........++++++||++|+|+.+
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12222222212222356899999999999986
No 194
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.89 E-value=6e-22 Score=142.76 Aligned_cols=175 Identities=20% Similarity=0.184 Sum_probs=127.6
Q ss_pred hHHHHHHHHh-h--hhcc---ceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCC
Q 030000 3 FLDSILNWLR-S--LFFK---QEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 3 ~~~~~~~~~~-~--~~~~---~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g 73 (184)
|++.+.+.++ . .... ..++|+++|.|++|||||+|++++.+. ....+.|.+.....++..+..+.++||+|
T Consensus 156 Lld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAG 235 (444)
T COG1160 156 LLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAG 235 (444)
T ss_pred HHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCC
Confidence 4566666653 1 1111 469999999999999999999998764 34556788888888999999999999999
Q ss_pred ccchhHh-----------HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--cCHH
Q 030000 74 QRRFRTM-----------WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQ 140 (184)
Q Consensus 74 ~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~ 140 (184)
..+-... ....+..++.+++|+|++.+-+.+. .....+... .+.++++++||||+.+. ...+
T Consensus 236 iRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD--~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~ 310 (444)
T COG1160 236 IRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQD--LRIAGLIEE---AGRGIVIVVNKWDLVEEDEATME 310 (444)
T ss_pred CCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH--HHHHHHHHH---cCCCeEEEEEccccCCchhhHHH
Confidence 4432221 2234678999999999987644433 222333222 58999999999999875 4455
Q ss_pred HHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 141 ALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+..+.+..........+++++||++|.++.++++.+.+....
T Consensus 311 ~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 311 EFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred HHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHH
Confidence 555555554455567799999999999999999999876543
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=7.4e-22 Score=154.55 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=105.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccc--------hhHhHHhhcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWERYCR 86 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~ 86 (184)
...+|+++|.+++|||||+|++++.... ...+.|........+..+..+.+|||||.+. +......+++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 3478999999999999999999976542 1222333344444566778999999999653 3344455688
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.+|++++|+|+++. +......+...+.. .++|+++|+||+|+..... ...+...+. . ...+++||++|
T Consensus 354 ~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg-~----~~~~~iSA~~g 421 (712)
T PRK09518 354 LADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLG-L----GEPYPISAMHG 421 (712)
T ss_pred hCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcC-C----CCeEEEECCCC
Confidence 99999999999764 33333333334333 5799999999999854321 112221111 1 12578999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030000 167 INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~ 182 (184)
.|+.++++++.+.+..
T Consensus 422 ~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 422 RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCchHHHHHHHHhccc
Confidence 9999999999988754
No 196
>PRK10218 GTP-binding protein; Provisional
Probab=99.89 E-value=8.3e-22 Score=150.32 Aligned_cols=161 Identities=20% Similarity=0.234 Sum_probs=115.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc--CCCCCC----------------CCCccceeEEEEeecCEEEEEEEcCCccchh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT--GGYSED----------------MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~--~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 78 (184)
++..+|+++|+.++|||||+++++. +.+... ...|.......+++.++.+++|||||+.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 3456899999999999999999996 333221 1123333344567889999999999999999
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCcc--CC
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESI--TD 153 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~--~~ 153 (184)
..+..+++.+|++++|+|+.+.... .....+..... .++|.++++||+|+..... .+++.+.+..... ..
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 9999999999999999999865333 23333443333 4789999999999865332 2333333321111 12
Q ss_pred CceeEEEeeeccCC----------CHHHHHHHHHHHhhh
Q 030000 154 REVCCYMISCKDSI----------NIDAVIDWLIKHSKT 182 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~----------~i~~l~~~i~~~~~~ 182 (184)
..++++.+||++|. ++..+++.|.+.++.
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 45789999999998 589999999988764
No 197
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.89 E-value=7.4e-22 Score=150.68 Aligned_cols=157 Identities=22% Similarity=0.291 Sum_probs=115.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC--CCCC----------------CCCCccceeEEEEeecCEEEEEEEcCCccchhHhHH
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG--GYSE----------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE 82 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~--~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 82 (184)
+|+++|+.++|||||+++|+.. .+.. ..+.|+......+.+.++.+++|||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999852 2211 122344555566888999999999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCcc--CCCcee
Q 030000 83 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESI--TDREVC 157 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~~ 157 (184)
.+++.+|++++|+|+.+. .......++..... .++|+++++||+|+..... ..+..+.+..... ....++
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 999999999999999764 34445555555543 4789999999999865321 1222232221111 123568
Q ss_pred EEEeeeccCC----------CHHHHHHHHHHHhhh
Q 030000 158 CYMISCKDSI----------NIDAVIDWLIKHSKT 182 (184)
Q Consensus 158 ~~~~Sa~~~~----------~i~~l~~~i~~~~~~ 182 (184)
++++||++|. |+..+++.|.+.++.
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 9999999996 799999999998764
No 198
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.89 E-value=2.7e-22 Score=135.89 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=95.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---------------------------------CCCCccceeEEEEeecCEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSE---------------------------------DMIPTVGFNMRKVTKGNVTIK 67 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~---------------------------------~~~~t~~~~~~~~~~~~~~~~ 67 (184)
+|+++|++|+|||||+++|+...-.. ....|.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999997432110 122344444555667788999
Q ss_pred EEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHH
Q 030000 68 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQ 145 (184)
Q Consensus 68 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~ 145 (184)
+|||||++++.......++.+|++++|+|+.++..... ... ..+.... ...++++|+||+|+.+... .......
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~-~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRH-SYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHH-HHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999999887777777899999999999986532222 111 1122221 1245788999999864221 1111111
Q ss_pred hCC--CccCCCceeEEEeeeccCCCHHH
Q 030000 146 LGL--ESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 146 ~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+.. ........+++++||++|.|+.+
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 110 11112235699999999999875
No 199
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.89 E-value=1.9e-21 Score=126.61 Aligned_cols=164 Identities=23% Similarity=0.317 Sum_probs=116.6
Q ss_pred HHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCC----CCCCCCCccceeEEEEeecCEEEEEEEcCC----------cc
Q 030000 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGG----YSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----------QR 75 (184)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g----------~~ 75 (184)
.+...+......|+++|.+++|||||+|++++.+ ....++.|.-.++..+... +.++|.|| .+
T Consensus 15 ~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 15 DIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred CHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHH
Confidence 3445566678899999999999999999999865 2344455666666665554 78999999 44
Q ss_pred chhHhHHhhccC---CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH----HHHHHhCC
Q 030000 76 RFRTMWERYCRG---VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGL 148 (184)
Q Consensus 76 ~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~----~~~~~~~~ 148 (184)
.+......|++. ..++++++|+..+ ....+..+..++.+ .++|+++++||+|..+..... ...+.+..
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~--~~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~ 166 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHP--PKDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKK 166 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCC--CcHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcC
Confidence 455556666643 5789999999554 44445555566555 689999999999998865553 33333333
Q ss_pred CccCCCceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 149 ESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 149 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
....... ++..|+.++.|++++.+.|.+.+...
T Consensus 167 ~~~~~~~--~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 167 PPPDDQW--VVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred CCCccce--EEEEecccccCHHHHHHHHHHHhhcc
Confidence 2222211 78899999999999999999887654
No 200
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.89 E-value=2.4e-21 Score=133.20 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=111.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--------------------CCCCCccceeEEEEeecCEEEEEEEcCCccchhHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYS--------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 80 (184)
+|+++|+.|+|||||+++++...-. .....|.......+.+.+.++++|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999853110 01112333455567788999999999999999998
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc---CHHHHHHHhCC---------
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---SKQALVDQLGL--------- 148 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~---~~~~~~~~~~~--------- 148 (184)
+..+++.+|++++|+|+.+.... ....++..... .++|+++++||+|+.... ..+++.+.++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 99999999999999999876443 23333333322 478999999999986421 11222222211
Q ss_pred ---------------------------------Cc--------------cCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 149 ---------------------------------ES--------------ITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 149 ---------------------------------~~--------------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.. ....-+|++..||.++.|+..+++.+.+.++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 00 0123578999999999999999999998876
Q ss_pred h
Q 030000 182 T 182 (184)
Q Consensus 182 ~ 182 (184)
.
T Consensus 236 ~ 236 (237)
T cd04168 236 T 236 (237)
T ss_pred C
Confidence 4
No 201
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.89 E-value=4.1e-22 Score=135.98 Aligned_cols=147 Identities=19% Similarity=0.132 Sum_probs=97.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--C-------------------------------CCCCCccceeEEEEeecCEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGY--S-------------------------------EDMIPTVGFNMRKVTKGNVTIK 67 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~--~-------------------------------~~~~~t~~~~~~~~~~~~~~~~ 67 (184)
+|+++|+.++|||||+.+|+...- . ...+.|.......+...+..++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999973110 0 0122244445555777889999
Q ss_pred EEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCC------HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc----c
Q 030000 68 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS------VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA----L 137 (184)
Q Consensus 68 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~ 137 (184)
+||+||+..+...+...++.+|++++|+|+.+... .......+... .. ....|+++++||+|+... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCCeEEEEEEccccccccccHH
Confidence 99999999888877778889999999999987421 11112222211 11 123689999999999732 1
Q ss_pred CHHHHHHHh----CCCccCCCceeEEEeeeccCCCHH
Q 030000 138 SKQALVDQL----GLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 138 ~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
...++.+.+ .........++++++||++|+|+.
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 122233222 222222345789999999999986
No 202
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.89 E-value=6.8e-22 Score=145.84 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=104.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC-----CCCCccceeEEE----------------E----ee------cCEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSE-----DMIPTVGFNMRK----------------V----TK------GNVT 65 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~-----~~~~t~~~~~~~----------------~----~~------~~~~ 65 (184)
.++++|+++|++++|||||+++|.+..... ...-|....+.. . +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 457899999999999999999996432111 111122111110 0 01 2467
Q ss_pred EEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHH
Q 030000 66 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ 145 (184)
Q Consensus 66 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~ 145 (184)
+++||+||+++|...+......+|++++|+|++++.........+..+ ... ...|+++++||+|+.+.....+..+.
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999988888888999999999998643112222222222 221 23468999999999764332222222
Q ss_pred hCC--CccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 146 LGL--ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 146 ~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
+.. .......++++++||++|+|++++++++...++
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 111 111123568999999999999999999998654
No 203
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=1.3e-21 Score=141.09 Aligned_cols=149 Identities=22% Similarity=0.209 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccchh---------HhHHhhccC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR---------TMWERYCRG 87 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~~~ 87 (184)
..|+++|.|++|||||+|+|.+.+. ...++.|.+..+...++.+..+.++||+|.+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 5799999999999999999998765 3445678888899999999999999999965322 233345778
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|... ........+..++.. .++|+++|+||+|....+......-.+++. ..+.+||..|.
T Consensus 84 ADvilfvVD~~~--Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~~~~efyslG~g-------~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGRE--GITPADEEIAKILRR---SKKPVILVVNKIDNLKAEELAYEFYSLGFG-------EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCC--CCCHHHHHHHHHHHh---cCCCEEEEEEcccCchhhhhHHHHHhcCCC-------CceEeehhhcc
Confidence 999999999954 344556666666663 579999999999986433222222222322 47999999999
Q ss_pred CHHHHHHHHHHHh
Q 030000 168 NIDAVIDWLIKHS 180 (184)
Q Consensus 168 ~i~~l~~~i~~~~ 180 (184)
|+.++++++.+.+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999986
No 204
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.88 E-value=1.8e-21 Score=148.11 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=104.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEee----------------cCEEEEEEEcCCccchh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDM----IPTVGFNMRKVTK----------------GNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~----~~t~~~~~~~~~~----------------~~~~~~~~d~~g~~~~~ 78 (184)
..-|+++|++++|||||++++.+..+.... .++.+......+. ....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 456999999999999999999987664332 2334433322211 01238899999999999
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--------------HHHHH-
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------KQALV- 143 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------------~~~~~- 143 (184)
.++..+++.+|++++|+|+++....+.... +. .+.. .++|+++++||+|+.+.-. .+...
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~-i~-~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEA-LN-ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHH-HH-HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 999999999999999999987433322221 11 2222 4789999999999864110 00000
Q ss_pred ----------HHhC---CCc-------cCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 144 ----------DQLG---LES-------ITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 144 ----------~~~~---~~~-------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
..+. ... ......+++++||++|+|+++++.++....
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0111 110 112357899999999999999999886543
No 205
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.88 E-value=5.9e-23 Score=126.85 Aligned_cols=161 Identities=24% Similarity=0.420 Sum_probs=127.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
-.+||.++|++..|||||+-...++.+.+.+..+.|.+... +......+.+||.+|++++..+.+....++-++++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 46899999999999999999999999888888888866654 45666889999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
++|++.++++..+..|+.+.... +...+|++ ++||.|+.-.-+ .++..........+.-+.+.++||+....|+++
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~-NktAiPil-vGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGL-NKTAIPIL-VGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK 176 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhcc-CCccceEE-eccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence 99999999999999999988543 33556655 599999754322 222222222222222345799999999999999
Q ss_pred HHHHHHHHh
Q 030000 172 VIDWLIKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+|+.+..++
T Consensus 177 IFK~vlAkl 185 (205)
T KOG1673|consen 177 IFKIVLAKL 185 (205)
T ss_pred HHHHHHHHH
Confidence 999988765
No 206
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.88 E-value=8.5e-22 Score=122.85 Aligned_cols=135 Identities=19% Similarity=0.213 Sum_probs=94.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCC----ccchhHhHHhhccCCCEEEEEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----QRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g----~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
||+++|+.|||||||+++|.+..... ..|....+. =.++|||| ++.+.+.......++|.+++|.|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~--~KTq~i~~~--------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY--KKTQAIEYY--------DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc--CccceeEec--------ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 79999999999999999998655432 223222221 24589999 55666666666779999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc-cccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS-EALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
++++.+.-. ..+... .+.|+|-|+||+|+. +..+.+...+.+...... .+|++|+.+|+|++++.++
T Consensus 73 at~~~~~~p--P~fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 73 ATEPRSVFP--PGFASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred CCCCCccCC--chhhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHH
Confidence 987644321 111212 368999999999998 344455555555443222 3699999999999999998
Q ss_pred HH
Q 030000 176 LI 177 (184)
Q Consensus 176 i~ 177 (184)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 85
No 207
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.88 E-value=1.4e-21 Score=144.06 Aligned_cols=164 Identities=18% Similarity=0.190 Sum_probs=104.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC-----CCCCCccceeEEE--------------Eee-------c-----CE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYS-----EDMIPTVGFNMRK--------------VTK-------G-----NV 64 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~-----~~~~~t~~~~~~~--------------~~~-------~-----~~ 64 (184)
.+++++|+++|+.++|||||+.+|.+.-.. .....|....+.. +.. . ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 456799999999999999999999642111 1112233221111 000 0 36
Q ss_pred EEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHH
Q 030000 65 TIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVD 144 (184)
Q Consensus 65 ~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~ 144 (184)
.+++||+||++++..........+|++++|+|+.++.........+..+ ... ...|+++|+||+|+.+.....+..+
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 7999999999998877777777889999999998653111122222222 111 2246899999999976433221112
Q ss_pred HhC-C-CccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 145 QLG-L-ESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 145 ~~~-~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.+. . ........+++++||++|+|+++++++|.+.++.
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 111 1 0111235689999999999999999999987653
No 208
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.88 E-value=5.5e-21 Score=131.24 Aligned_cols=151 Identities=22% Similarity=0.243 Sum_probs=102.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecCEEEEEEEcCCccchh-------HhHHhhccCCCEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TMWERYCRGVSAI 91 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~~~~ 91 (184)
+|+++|++|+|||||++++.+...... ..+|.......+...+..+++||+||..+.. ......++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 789999999999999999997654322 2245556666677788999999999974322 2334578899999
Q ss_pred EEEEeCCCCCC-HHHHHHHHH----------------------------------------HHhcC--------------
Q 030000 92 LYVVDAADRDS-VPIARSELH----------------------------------------ELLMK-------------- 116 (184)
Q Consensus 92 i~v~d~~~~~~-~~~~~~~~~----------------------------------------~~~~~-------------- 116 (184)
++|+|++++.. ...+...+. .+++.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999976542 221211111 01100
Q ss_pred ----------CCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 117 ----------PSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 117 ----------~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
....-+|+++|+||+|+.+..+.+. +.. ...++++||++|.|++++++.+.+.+.
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~----~~~------~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----LAR------QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH----Hhc------CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0112368999999999865433331 111 124889999999999999999988764
No 209
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.87 E-value=5.4e-21 Score=130.27 Aligned_cols=153 Identities=22% Similarity=0.249 Sum_probs=101.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCC----------------Cc-------cceeE-----------------EEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMI----------------PT-------VGFNM-----------------RKVT 60 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~----------------~t-------~~~~~-----------------~~~~ 60 (184)
||+++|+.++|||||++++..+.+..... .| .|+.. ..++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58899999999999999998655433211 01 11110 2233
Q ss_pred ecCEEEEEEEcCCccchhHhHHhhcc--CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC
Q 030000 61 KGNVTIKLWDLGGQRRFRTMWERYCR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 61 ~~~~~~~~~d~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 138 (184)
..+..++++|+||+++|.......+. .+|++++|+|+..... .....+..++.. .++|+++++||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 45678999999999998776665554 6899999999876533 222222223222 4689999999999866433
Q ss_pred HHH----HHHHhCCCc---------------------cCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 139 KQA----LVDQLGLES---------------------ITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 139 ~~~----~~~~~~~~~---------------------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
..+ +.+.+.... ......++|.+|+.+|+|++++.+.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 322 222332110 1123458999999999999999988753
No 210
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.87 E-value=2.4e-20 Score=134.91 Aligned_cols=154 Identities=19% Similarity=0.225 Sum_probs=115.4
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHH--------h
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE--------R 83 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~--------~ 83 (184)
..+..++++++|.||+|||||+|.|++.+. ..-.++|.+.-...++..++.+.++||+|.++-....+ .
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 345679999999999999999999997764 34456788888888999999999999999665433222 3
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
.++++|.+++|+|++.+.+-..... .. ....+.|+++|.||.|+......... .. ....+++.+|+
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~--~~----~~~~~~~~i~v~NK~DL~~~~~~~~~--~~------~~~~~~i~iSa 358 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLAL--IE----LLPKKKPIIVVLNKADLVSKIELESE--KL------ANGDAIISISA 358 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHH--HH----hcccCCCEEEEEechhcccccccchh--hc------cCCCceEEEEe
Confidence 4788999999999987522222221 11 22357999999999999876553322 11 11226899999
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
++|+|++.+.+.|.+.+..
T Consensus 359 ~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 359 KTGEGLDALREAIKQLFGK 377 (454)
T ss_pred cCccCHHHHHHHHHHHHhh
Confidence 9999999999999887754
No 211
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.87 E-value=6.9e-21 Score=148.96 Aligned_cols=152 Identities=23% Similarity=0.247 Sum_probs=106.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecCEEEEEEEcCCccchhHh----------HHhh-
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM----------WERY- 84 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----------~~~~- 84 (184)
+.++|+++|++|||||||+|++.+.+.... .+.|.......+...+.++.+||+||..++... ...+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 357899999999999999999997654322 233554555567778899999999998765321 1223
Q ss_pred -ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 85 -CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 85 -~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
...+|++++|+|+++.++.. .+..++.+ .++|+++++||+|+.+........+.+.. ..+.+++++|+
T Consensus 82 ~~~~aD~vI~VvDat~ler~l---~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~----~LG~pVvpiSA 150 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNL---YLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSA----RLGCPVIPLVS 150 (772)
T ss_pred hccCCCEEEEEecCCcchhhH---HHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHH----HhCCCEEEEEe
Confidence 24789999999998754422 23333322 47999999999998754333222222211 11347999999
Q ss_pred ccCCCHHHHHHHHHHHh
Q 030000 164 KDSINIDAVIDWLIKHS 180 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~ 180 (184)
++|+|++++.+.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999998764
No 212
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.87 E-value=3.9e-21 Score=147.06 Aligned_cols=140 Identities=25% Similarity=0.278 Sum_probs=99.0
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCEEEEEEEcCCccchhHh------HHhhc--cCCCEEEEEE
Q 030000 26 GLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRTM------WERYC--RGVSAILYVV 95 (184)
Q Consensus 26 G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------~~~~~--~~~~~~i~v~ 95 (184)
|++|+|||||+|++.+........+ |.......++..+..+++||+||+.++... ...++ .++|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 8999999999999998776444444 333444456677788999999998876542 23333 4789999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH----HHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+++.+.. ..+..+..+ .++|+++++||+|+.+.... +.+.+.+ +.+++++||++|+|+++
T Consensus 81 Dat~ler~---l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l--------g~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 81 DASNLERN---LYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERL--------GVPVVPTSATEGRGIER 145 (591)
T ss_pred cCCcchhh---HHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc--------CCCEEEEECCCCCCHHH
Confidence 99874322 222222322 47999999999998654332 2223322 24799999999999999
Q ss_pred HHHHHHHHh
Q 030000 172 VIDWLIKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+++++.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998753
No 213
>PRK12736 elongation factor Tu; Reviewed
Probab=99.87 E-value=2.4e-20 Score=137.22 Aligned_cols=161 Identities=17% Similarity=0.136 Sum_probs=109.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
.+++++|+++|+.++|||||+++|++.... ...+.|.......++..+..+.++|+||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 457899999999999999999999852110 12223444444445566788999999999999
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCHH-----HHHHHhCCCcc
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSKQ-----ALVDQLGLESI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~-----~~~~~~~~~~~ 151 (184)
.......+..+|++++|+|+.+..... ....+..+ .. .++| +++++||+|+.+..+.. ++.+.+.....
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~-~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLA-RQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHH-HH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 887777788999999999997643322 22222222 22 3677 67889999987433221 22222221122
Q ss_pred CCCceeEEEeeeccCC--------CHHHHHHHHHHHhh
Q 030000 152 TDREVCCYMISCKDSI--------NIDAVIDWLIKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~--------~i~~l~~~i~~~~~ 181 (184)
.....+++++||++|. ++.++++.+.+.++
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2234689999999983 68888888887764
No 214
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.86 E-value=1.6e-20 Score=144.04 Aligned_cols=156 Identities=20% Similarity=0.243 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC---CCCC--CCCccceeEEEEee-cCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGG---YSED--MIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~---~~~~--~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
-|+++|+.++|||||++++.+.. +..+ .+.|....+..+.. .+..+.+||+||+++|.......+.++|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 47899999999999999998532 2222 34555544444433 346789999999999988888889999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCHHHHHHHhCCC--ccCCCceeEEEeeeccCCCHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSKQALVDQLGLE--SITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+|+++.-..+. ...+ .++.. .++| +++|+||+|+.+....+...+.+... .......+++++||++|+|+++
T Consensus 82 Vda~eg~~~qT-~ehl-~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 82 VACDDGVMAQT-REHL-AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EECCCCCcHHH-HHHH-HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99976432222 2222 23222 2455 57999999997543332222222110 1112245799999999999999
Q ss_pred HHHHHHHHhh
Q 030000 172 VIDWLIKHSK 181 (184)
Q Consensus 172 l~~~i~~~~~ 181 (184)
++++|.+...
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999987654
No 215
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.4e-21 Score=124.63 Aligned_cols=157 Identities=21% Similarity=0.363 Sum_probs=131.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe---e-cCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT---K-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~---~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..++++++|..|.||||+.++.+.++|...+.+|.|....... + +.+.+..|||+|++.+......++-+..+.++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 3689999999999999999999999999999999996665422 2 34899999999999999988888888999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
++|++.+-++.+...|...+.+.+. ++||++++||.|...... +.........+...+++.|++++.|.+.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvDi~~r~~-----k~k~v~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVDIKARKV-----KAKPVSFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc--CCCeeeeccceecccccc-----ccccceeeecccceeEEeecccccccccch
Confidence 9999999999999999999877654 699999999999855431 122223334556689999999999999999
Q ss_pred HHHHHHhh
Q 030000 174 DWLIKHSK 181 (184)
Q Consensus 174 ~~i~~~~~ 181 (184)
-|+...+.
T Consensus 162 l~LarKl~ 169 (216)
T KOG0096|consen 162 LWLARKLT 169 (216)
T ss_pred HHHhhhhc
Confidence 99988763
No 216
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.86 E-value=5.9e-20 Score=128.29 Aligned_cols=112 Identities=25% Similarity=0.320 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC--CCC----------------------CCCCccceeEEEEeecCEEEEEEEcCCcc
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG--YSE----------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~--~~~----------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 75 (184)
-+|+++|++|+|||||+++++... ... ....++......+++.++++++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999998421 000 01122334445678889999999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
+|.......++.+|++++|+|+++..... ...++. ... ..++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~-~~~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFE-VCR---LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHH-HHH---hcCCCEEEEEECCccCCC
Confidence 98887777889999999999998753322 223332 222 247899999999997553
No 217
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.86 E-value=2.7e-20 Score=122.16 Aligned_cols=154 Identities=21% Similarity=0.251 Sum_probs=97.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecCEEEEEEEcCCccc----------hhHhHHhhcc--
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQRR----------FRTMWERYCR-- 86 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~~----------~~~~~~~~~~-- 86 (184)
.|+++|++|+|||||++.+.++.......++.+... ..+... ..+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 378999999999999999996555444444433222 222222 2889999999432 3333334443
Q ss_pred -CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc-CCCceeEEEeeec
Q 030000 87 -GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCK 164 (184)
Q Consensus 87 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 164 (184)
+++++++++|.....+.... .+..++.. .+.|+++++||+|+.................. .....+++++|++
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDL--EMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHH--HHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 46788999998765332221 12222222 35899999999999654443333222221100 2334578999999
Q ss_pred cCCCHHHHHHHHHHHh
Q 030000 165 DSINIDAVIDWLIKHS 180 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~ 180 (184)
++.++.+++++|.+.+
T Consensus 155 ~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 155 KGQGIDELRALIEKWL 170 (170)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999998753
No 218
>PRK12735 elongation factor Tu; Reviewed
Probab=99.86 E-value=3.7e-20 Score=136.31 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=106.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC-------CC-----------CCCCCCccceeEEEEeecCEEEEEEEcCCccchh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG-------GY-----------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~-------~~-----------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 78 (184)
+++++|+++|++++|||||+++|++. .+ ....+.|.......++..+.++.++||||+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 56799999999999999999999852 00 0012224444444455667889999999999988
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCcccccCH-H----HHHHHhCCCccC
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEALSK-Q----ALVDQLGLESIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+.+....+ ....+..+ .. .++|.+ +++||+|+.+.... + ++.+.+......
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~-~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQ-TREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHH-HH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 87778888999999999997643222 22333322 22 367855 57999999743221 1 222222211111
Q ss_pred CCceeEEEeeeccCC----------CHHHHHHHHHHHhh
Q 030000 153 DREVCCYMISCKDSI----------NIDAVIDWLIKHSK 181 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~----------~i~~l~~~i~~~~~ 181 (184)
....+++++||++|. ++.++++.+.+.++
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 235789999999984 67888888877653
No 219
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.86 E-value=4.1e-20 Score=141.16 Aligned_cols=154 Identities=19% Similarity=0.266 Sum_probs=101.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEee------cC-----E-----EEEEEEcCCccch
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDM----IPTVGFNMRKVTK------GN-----V-----TIKLWDLGGQRRF 77 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~----~~t~~~~~~~~~~------~~-----~-----~~~~~d~~g~~~~ 77 (184)
++..|+++|++++|||||++++.+....... .++.|........ .. . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 4567999999999999999999865543222 1234433222111 00 1 2789999999999
Q ss_pred hHhHHhhccCCCEEEEEEeCCCC---CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC----------------
Q 030000 78 RTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---------------- 138 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---------------- 138 (184)
...+...+..+|++++|+|+++. .++..+. .+.. .++|+++++||+|+...-.
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99888888999999999999873 3333222 2222 4789999999999852100
Q ss_pred --HHH-------HHHHhCCCcc----------CCCceeEEEeeeccCCCHHHHHHHHHHH
Q 030000 139 --KQA-------LVDQLGLESI----------TDREVCCYMISCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 139 --~~~-------~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 179 (184)
.+. ....+....+ .....+++++||++|+|++++++.+...
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 000 1111111111 1245789999999999999999887653
No 220
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.5e-20 Score=117.56 Aligned_cols=165 Identities=33% Similarity=0.538 Sum_probs=136.9
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
.-++.-|++++|..++|||||++.+.+++. ....||.-....++...+.+++-+|.+|+..-+..|..++..++++++.
T Consensus 16 L~kK~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 16 LYKKFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred HhccCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 346788999999999999999999865554 3566777777788889999999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCC------------CccCCCceeEEEee
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL------------ESITDREVCCYMIS 162 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~S 162 (184)
+|+.+.+.+......+..++......++|+++.+||+|...+...++....+.+ .....+...++-||
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcs 174 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCS 174 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEE
Confidence 999999999999998888877666678999999999999887666555544432 12334577889999
Q ss_pred eccCCCHHHHHHHHHHHh
Q 030000 163 CKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~ 180 (184)
...+.+-.+.|.|+...+
T Consensus 175 i~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 175 IVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEccCccceeeeehhhhc
Confidence 999988888888876643
No 221
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.85 E-value=5e-20 Score=135.68 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=104.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC-----C--C-----------CCCCCCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATG-----G--Y-----------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~-----~--~-----------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
.+++++|+++|+.++|||||+++|+.. + . ....+.|.......++..+..+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 356899999999999999999999732 0 0 011334555555556667788999999999999
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCcccccCH-H----HHHHHhCCCcc
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEALSK-Q----ALVDQLGLESI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~-~----~~~~~~~~~~~ 151 (184)
..........+|++++|+|+.+....+. ...+..+ .. .++|.+ +++||+|+.+.... + ++.+.+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQT-REHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHH-HH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 8777777788999999999986433322 2222222 22 357755 68999998753321 1 22222222212
Q ss_pred CCCceeEEEeeeccCC--------CHHHHHHHHHHH
Q 030000 152 TDREVCCYMISCKDSI--------NIDAVIDWLIKH 179 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~--------~i~~l~~~i~~~ 179 (184)
....++++++||++|. ++.++++.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 164 PGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred CccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 2234789999999875 345566665544
No 222
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.85 E-value=2e-20 Score=127.24 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=100.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCC---------------------CCccceeEEEE-----eecCEEEEEEEcCCc
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDM---------------------IPTVGFNMRKV-----TKGNVTIKLWDLGGQ 74 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~---------------------~~t~~~~~~~~-----~~~~~~~~~~d~~g~ 74 (184)
+|+++|+.|+|||||+++++........ ..+.......+ +...+.+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999864432210 01111111112 233588999999999
Q ss_pred cchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc-------ccCHHH---HHH
Q 030000 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-------ALSKQA---LVD 144 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-------~~~~~~---~~~ 144 (184)
.++......++..+|++++|+|+.+..+... ..++..... .+.|+++++||+|+.. .+..+. ..+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~ 156 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIID 156 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHH
Confidence 9998888888999999999999987766543 223332222 3589999999999752 111111 111
Q ss_pred HhC----CCcc------CCCceeEEEeeeccCCCHH--------HHHHHHHHHhh
Q 030000 145 QLG----LESI------TDREVCCYMISCKDSINID--------AVIDWLIKHSK 181 (184)
Q Consensus 145 ~~~----~~~~------~~~~~~~~~~Sa~~~~~i~--------~l~~~i~~~~~ 181 (184)
.+. .... ......+++.|++.++++. ++++.|.+.++
T Consensus 157 ~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 157 EVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 111 1100 0112347889999998776 77777776654
No 223
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.84 E-value=1e-19 Score=123.54 Aligned_cols=109 Identities=23% Similarity=0.228 Sum_probs=78.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--C----------------CCCCccceeEE--EEe--------ecCEEEEEEEcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYS--E----------------DMIPTVGFNMR--KVT--------KGNVTIKLWDLG 72 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~--~----------------~~~~t~~~~~~--~~~--------~~~~~~~~~d~~ 72 (184)
+|+++|+.++|||||+.+|+...-. . ..+-|+..... .+. ...+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999843210 0 01112221111 122 227889999999
Q ss_pred CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
|+.+|......+++.+|++++|+|+.+...... ...+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999988765543 222232322 368999999999975
No 224
>CHL00071 tufA elongation factor Tu
Probab=99.84 E-value=7.3e-20 Score=135.27 Aligned_cols=148 Identities=18% Similarity=0.158 Sum_probs=99.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
.+++++|+++|++++|||||+++|++.... ...+.|.......++.++.++.++||||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 356799999999999999999999953110 01222333333445567788999999999998
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCH-H----HHHHHhCCCcc
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-Q----ALVDQLGLESI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 151 (184)
.......+..+|++++|+|+...-.-+ ....+. .+.. .++| +++++||+|+.+.... + ++.+.+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~-~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQ-TKEHIL-LAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHH-HHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 888888889999999999997643222 222222 2222 3678 7789999999753322 1 22222222112
Q ss_pred CCCceeEEEeeeccCCC
Q 030000 152 TDREVCCYMISCKDSIN 168 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~ 168 (184)
....++++++||.+|+|
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 PGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCcceEEEcchhhccc
Confidence 22357899999999874
No 225
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.84 E-value=5.7e-20 Score=137.63 Aligned_cols=162 Identities=14% Similarity=0.130 Sum_probs=104.5
Q ss_pred HHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCC--CC---------------------------------CCCCc
Q 030000 7 ILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGY--SE---------------------------------DMIPT 51 (184)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~--~~---------------------------------~~~~t 51 (184)
...|+.....+..++|+++|++++|||||+++|+...- .. ..+-|
T Consensus 15 ~~~~~~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiT 94 (474)
T PRK05124 15 VEAYLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGIT 94 (474)
T ss_pred HHHHHhhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCC
Confidence 34455444557789999999999999999999984321 00 01123
Q ss_pred cceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 030000 52 VGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 131 (184)
+...+..++..+.++.++||||++.|.......+..+|++++|+|+...-.-.....+. +.... ...|+++++||+
T Consensus 95 id~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~l--g~~~iIvvvNKi 170 (474)
T PRK05124 95 IDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF--IATLL--GIKHLVVAVNKM 170 (474)
T ss_pred eEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH--HHHHh--CCCceEEEEEee
Confidence 34444456677889999999999998777777789999999999997643221111111 11111 124789999999
Q ss_pred CcccccC--HHHHHHHhCC--CccC-CCceeEEEeeeccCCCHHHH
Q 030000 132 DKSEALS--KQALVDQLGL--ESIT-DREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 132 D~~~~~~--~~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~~i~~l 172 (184)
|+.+... ..+..+.+.. .... ....+++++||++|+|+.++
T Consensus 171 D~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 171 DLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 9874221 2222222211 0011 23568999999999998764
No 226
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.84 E-value=5.4e-20 Score=123.66 Aligned_cols=158 Identities=14% Similarity=0.199 Sum_probs=97.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-----EEEee-cCEEEEEEEcCCccchhHhHHh-----hccC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-----RKVTK-GNVTIKLWDLGGQRRFRTMWER-----YCRG 87 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-----~~~~~-~~~~~~~~d~~g~~~~~~~~~~-----~~~~ 87 (184)
+++|+++|.+|+|||||+|.+++.........+.+... ..+.. ....+.+||+||.......... .+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 37899999999999999999997654432222222110 11111 1236899999997543222222 2567
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---------HHHHHHHh----CCC--ccC
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---------KQALVDQL----GLE--SIT 152 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---------~~~~~~~~----~~~--~~~ 152 (184)
+|+++++.+. ++......+...+.. .+.|+++|+||+|+..+.. .++..+.+ ... ...
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8888887542 344555544445444 3689999999999854211 11222111 110 011
Q ss_pred CCceeEEEeeec--cCCCHHHHHHHHHHHhhhc
Q 030000 153 DREVCCYMISCK--DSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 153 ~~~~~~~~~Sa~--~~~~i~~l~~~i~~~~~~~ 183 (184)
....++|.+|+. .+.++..+.+.|...++..
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 234468999998 6899999999999988764
No 227
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.84 E-value=3.9e-19 Score=134.30 Aligned_cols=115 Identities=23% Similarity=0.294 Sum_probs=82.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc--CCCCC----------------------CCCCccceeEEEEeecCEEEEEEEcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT--GGYSE----------------------DMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~--~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~~~d~~ 72 (184)
.+..+|+++|++++|||||+++++. +.... ....++......+.+.++.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3567899999999999999999973 11000 00112223334577889999999999
Q ss_pred CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
|+.+|......+++.+|++++|+|+.+.-.. ....++... ...++|+++++||+|+...
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCccccc
Confidence 9999988888889999999999999875322 223333322 2257999999999998653
No 228
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.3e-19 Score=116.25 Aligned_cols=164 Identities=27% Similarity=0.356 Sum_probs=115.9
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhcc---CCCEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCR---GVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~---~~~~~ 91 (184)
..+.+-.|+++|+.+||||+|.-++..+... ...+.+..+...+..++-...++|.||+.+.+.....++. ++.++
T Consensus 34 rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~-~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 34 RRSKQNAVLLVGLSDSGKTSLFTQLITGSHR-GTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred hhccCCcEEEEecCCCCceeeeeehhcCCcc-CeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 3445578999999999999999999877433 2233444455556666666899999999999887777776 78999
Q ss_pred EEEEeCC-CCCCHHHHHHHHHHHhcCC--CCCCCcEEEEEeCCCcccccCHHHHHHHhCC-----------------C--
Q 030000 92 LYVVDAA-DRDSVPIARSELHELLMKP--SLSGIPLLVLGNKIDKSEALSKQALVDQLGL-----------------E-- 149 (184)
Q Consensus 92 i~v~d~~-~~~~~~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----------------~-- 149 (184)
|+|+|+. ..........++..++... ..+++|+++++||.|+......+.+.+.+.. .
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 9999974 3444455555555554443 3578999999999999876554333222210 0
Q ss_pred ----------------ccCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 150 ----------------SITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 150 ----------------~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
......+.+.++|++++ +++++.+||.+.+
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 01113567899999999 7999999998763
No 229
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.84 E-value=1.3e-19 Score=134.77 Aligned_cols=151 Identities=14% Similarity=0.130 Sum_probs=102.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCCCCCccceeEEEEeec
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGY---------------------------------SEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~---------------------------------~~~~~~t~~~~~~~~~~~ 62 (184)
.+++++|+++|+.++|||||+.+|+...- ....+-|+......++..
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 35689999999999999999999973110 011222444555567778
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCH-------HHHHHHHHHHhcCCCCCCC-cEEEEEeCCCcc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV-------PIARSELHELLMKPSLSGI-PLLVLGNKIDKS 134 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~iivv~nK~D~~ 134 (184)
+..++++|+||+++|.......+..+|++++|+|+.+. .+ ......+... .. .++ ++++++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-FT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-HH---cCCCcEEEEEEcccCC
Confidence 89999999999999999999999999999999999863 22 1223322222 11 356 578899999976
Q ss_pred cc----cC----HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 135 EA----LS----KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 135 ~~----~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+. .. .+++...+....+....++++++||++|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 21 11 122333332222223357899999999999853
No 230
>PLN03126 Elongation factor Tu; Provisional
Probab=99.83 E-value=5.3e-19 Score=132.07 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=100.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC------C------------CCCCCCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGG------Y------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~------~------------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
.++.++|+++|++++|||||+++|+... . .....-|.......++..+..+.++|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 3567999999999999999999998411 1 111222333334446667889999999999999
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCH-H----HHHHHhCCCcc
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-Q----ALVDQLGLESI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 151 (184)
.......+..+|++++|+|+.+....+ ....+..... .++| +++++||+|+.+.++. + ++.+.+....+
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 888888888999999999998654333 2333332322 3677 7789999999753321 1 22222222222
Q ss_pred CCCceeEEEeeeccCCC
Q 030000 152 TDREVCCYMISCKDSIN 168 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~ 168 (184)
.....+++++|+.+|.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 23467899999998853
No 231
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=9.5e-19 Score=121.31 Aligned_cols=171 Identities=22% Similarity=0.209 Sum_probs=121.4
Q ss_pred hHHHHHHHHhhhhcc--ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEeecCEEEEEEEcCCccc--
Q 030000 3 FLDSILNWLRSLFFK--QEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRR-- 76 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~-- 76 (184)
+|...+++|+.++.= ..+.|+|.|.||+|||||++.+...+...... +|.++....++.+...++++||||.-+
T Consensus 150 fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP 229 (346)
T COG1084 150 FLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP 229 (346)
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCC
Confidence 566778888877443 46899999999999999999999877654444 588899999999999999999999211
Q ss_pred ------hhHhHHhhccC-CCEEEEEEeCCC--CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhC
Q 030000 77 ------FRTMWERYCRG-VSAILYVVDAAD--RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG 147 (184)
Q Consensus 77 ------~~~~~~~~~~~-~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 147 (184)
....-..+++. .++++|++|++. ..+.+.....+..+... .+.|+++|+||+|....+..++....+.
T Consensus 230 l~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~ 306 (346)
T COG1084 230 LEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVL 306 (346)
T ss_pred hHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHH
Confidence 11111122333 568999999974 45666666666666544 3489999999999987666555554433
Q ss_pred CCccCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 148 LESITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
.... .....+++..+.+++.+-..+....
T Consensus 307 ~~~~----~~~~~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 307 EEGG----EEPLKISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred hhcc----ccccceeeeehhhHHHHHHHHHHHh
Confidence 2211 1245678888888888777776653
No 232
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.83 E-value=1.5e-19 Score=134.38 Aligned_cols=152 Identities=17% Similarity=0.161 Sum_probs=103.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC--CCC-------------------------------CCCCCccceeEEEEeec
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATG--GYS-------------------------------EDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~--~~~-------------------------------~~~~~t~~~~~~~~~~~ 62 (184)
.+++++|+++|+.++|||||+.+|+.. ... .....|.......++..
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 356799999999999999999999841 100 11223445555667788
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCC---H---HHHHHHHHHHhcCCCCCCCc-EEEEEeCCCccc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS---V---PIARSELHELLMKPSLSGIP-LLVLGNKIDKSE 135 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~ 135 (184)
+..++++|+||+++|.......+..+|++++|+|+..... + ......+... .. .++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCCeEEEEEEcccccc
Confidence 8999999999999999988888999999999999976421 0 1222222222 21 3665 678999999532
Q ss_pred ----ccCH----HHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 136 ----ALSK----QALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 136 ----~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
.... +++.+.+.........++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1222 22333332222223468899999999999864
No 233
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.83 E-value=4.7e-19 Score=133.37 Aligned_cols=149 Identities=23% Similarity=0.308 Sum_probs=112.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCEEEEEEEcCCccch------hHhHHhhc--cCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRF------RTMWERYC--RGV 88 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~------~~~~~~~~--~~~ 88 (184)
..+|+++|+||+|||||.|++++.+......+ |+.-....+...+.++.++|.||.-.. ......++ .+.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 46799999999999999999998877666555 555666668888889999999993221 11222332 457
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc----cCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA----LSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
|++|-|+|+++-++--.+.-.+.+ .+.|++++.|++|..+. .+.+++.+.++. |++++||+
T Consensus 83 D~ivnVvDAtnLeRnLyltlQLlE-------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv--------PVv~tvA~ 147 (653)
T COG0370 83 DLIVNVVDATNLERNLYLTLQLLE-------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV--------PVVPTVAK 147 (653)
T ss_pred CEEEEEcccchHHHHHHHHHHHHH-------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC--------CEEEEEee
Confidence 999999999886544444433333 37899999999999875 356777777765 69999999
Q ss_pred cCCCHHHHHHHHHHHhhh
Q 030000 165 DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~ 182 (184)
+|+|++++.+.+.+..+.
T Consensus 148 ~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 148 RGEGLEELKRAIIELAES 165 (653)
T ss_pred cCCCHHHHHHHHHHhccc
Confidence 999999999999876554
No 234
>PRK00049 elongation factor Tu; Reviewed
Probab=99.83 E-value=3.8e-19 Score=130.90 Aligned_cols=159 Identities=17% Similarity=0.125 Sum_probs=107.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCCCCccceeEEEEeecCEEEEEEEcCCccchh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 78 (184)
+++++|+++|+.++|||||+++|+..... .....|.......++..+.++.++||||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 56899999999999999999999862110 122234444444455677889999999999888
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCcccccCH-H----HHHHHhCCCccC
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEALSK-Q----ALVDQLGLESIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+....... ....+..+ .. .++|.+ +++||+|+.+.... + ++.+.+......
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~-~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQ-TREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHH-HH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 87778889999999999997643222 22222222 22 367876 58999999753221 1 222222222222
Q ss_pred CCceeEEEeeeccCC----------CHHHHHHHHHHHh
Q 030000 153 DREVCCYMISCKDSI----------NIDAVIDWLIKHS 180 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~----------~i~~l~~~i~~~~ 180 (184)
....+++++||++|. ++..+++.|.+.+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 345789999999875 5678888887754
No 235
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.9e-19 Score=131.81 Aligned_cols=162 Identities=17% Similarity=0.185 Sum_probs=117.0
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCC-----------------CCCCCCCccceeEEEEeecC---EEEEEEEcCCc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGG-----------------YSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQ 74 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~-----------------~~~~~~~t~~~~~~~~~~~~---~~~~~~d~~g~ 74 (184)
+.++--++.|+-+...|||||..+++... ...+.+-|+......+.+.+ +.++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 33556789999999999999999998321 11223334444444444444 99999999999
Q ss_pred cchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCC
Q 030000 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDR 154 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
-+|.......+.-|+++++|+|++..-.-+....++..+ . .+..+|.|+||+|+..... ++....+.. .+...
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~adp-e~V~~q~~~-lF~~~ 208 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSADP-ERVENQLFE-LFDIP 208 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCCH-HHHHHHHHH-HhcCC
Confidence 999999888899999999999998765555444444433 2 4788999999999976543 232222211 11222
Q ss_pred ceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 155 EVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
..+++.+||++|.|++++++.|+++++..
T Consensus 209 ~~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 209 PAEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred ccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 33789999999999999999999998764
No 236
>PRK13351 elongation factor G; Reviewed
Probab=99.83 E-value=6.2e-19 Score=138.12 Aligned_cols=115 Identities=24% Similarity=0.190 Sum_probs=89.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC-------------CC-------CCCCccceeEEEEeecCEEEEEEEcCCccc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY-------------SE-------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~-------------~~-------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
.+..+|+|+|+.++|||||+++++...- .. ....|+......+.+.+..+++|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 4567999999999999999999984210 00 133455666667888899999999999999
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
+...+..+++.+|++++|+|+++.........| ... . ..++|+++++||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~-~---~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQA-D---RYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHH-H---hcCCCEEEEEECCCCCCC
Confidence 998899999999999999999887666544333 222 2 247899999999998753
No 237
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.82 E-value=3.1e-19 Score=138.48 Aligned_cols=162 Identities=15% Similarity=0.079 Sum_probs=105.2
Q ss_pred HHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------------------------------CCC
Q 030000 6 SILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSED-----------------------------------MIP 50 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~-----------------------------------~~~ 50 (184)
.+.+++.....++.++|+++|++++|||||+++|+...-... .+-
T Consensus 11 ~~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~ 90 (632)
T PRK05506 11 DILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGI 90 (632)
T ss_pred cHHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCc
Confidence 355666666677889999999999999999999994321100 111
Q ss_pred ccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 030000 51 TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 130 (184)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK 130 (184)
|.......++..+.++.++||||+++|.......+..+|++++|+|+......+.... +. +.... ...++++++||
T Consensus 91 Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~-~~~~~--~~~~iivvvNK 166 (632)
T PRK05506 91 TIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SF-IASLL--GIRHVVLAVNK 166 (632)
T ss_pred CceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HH-HHHHh--CCCeEEEEEEe
Confidence 3333344566677889999999999887777777889999999999976432221111 11 11111 23578899999
Q ss_pred CCcccccC--HHHHHHHhCC--CccCCCceeEEEeeeccCCCHHH
Q 030000 131 IDKSEALS--KQALVDQLGL--ESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 131 ~D~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+|+.+... .++....+.. ........+++++||++|.|+.+
T Consensus 167 ~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 167 MDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 99864211 2222222210 11122345799999999999874
No 238
>PLN03127 Elongation factor Tu; Provisional
Probab=99.82 E-value=8.9e-19 Score=130.20 Aligned_cols=162 Identities=19% Similarity=0.155 Sum_probs=107.3
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcC------C------------CCCCCCCccceeEEEEeecCEEEEEEEcCCccc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATG------G------------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~------~------------~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
..+++++|+++|+.++|||||+++|.+. . .....+.|.......++..+.++.++||||+.+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 4457899999999999999999999621 1 011133455555566777788999999999999
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCH-H----HHHHHhCCCc
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-Q----ALVDQLGLES 150 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-~----~~~~~~~~~~ 150 (184)
|.......+..+|++++|+|+.+....+ ....+. ++.. .++| +++++||+|+.+.... + ++.+.+....
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~-~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHIL-LARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHH-HHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 8887777778899999999997653222 222222 2222 4688 5788999999753222 1 1112222111
Q ss_pred cCCCceeEEEeeec---cCCC-------HHHHHHHHHHHhh
Q 030000 151 ITDREVCCYMISCK---DSIN-------IDAVIDWLIKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~---~~~~-------i~~l~~~i~~~~~ 181 (184)
.....++++.+|+. +|.| +.++++.+.+.++
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 22235688888775 5555 7788888877654
No 239
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.82 E-value=8.6e-19 Score=122.58 Aligned_cols=110 Identities=19% Similarity=0.175 Sum_probs=82.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC--C------------------CCCCCCccceeEEEEeecCEEEEEEEcCCccchhHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGG--Y------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 80 (184)
+|+++|++++|||||+++++... . ......|.......+.+.+.++++|||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 48999999999999999997311 0 012223444555667788999999999999999888
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+...++.+|++++|+|+.+...-.. ...+... . ..++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~-~---~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQA-D---RYNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHH-H---HcCCCEEEEEECCCCCC
Confidence 8999999999999999977543222 2222222 2 24689999999999865
No 240
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.82 E-value=3.3e-19 Score=131.63 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--C---------------------------------CCCCccceeEEEEeecCE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS--E---------------------------------DMIPTVGFNMRKVTKGNV 64 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~--~---------------------------------~~~~t~~~~~~~~~~~~~ 64 (184)
++|+++|+.++|||||+++|+...-. . ...-|.......++..+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999999732110 0 011234444455667788
Q ss_pred EEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHH
Q 030000 65 TIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQAL 142 (184)
Q Consensus 65 ~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~ 142 (184)
++.++||||+++|.......+..+|++++|+|+......+.... +. +.... ...++++++||+|+.+... .++.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~~-~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-SY-IASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-HH-HHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 99999999999998777778899999999999976533222221 11 22221 1346889999999865321 1122
Q ss_pred HHHhCC--CccCCCceeEEEeeeccCCCHHH
Q 030000 143 VDQLGL--ESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 143 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
.+.+.. ........+++++||++|+|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222210 11122346799999999999875
No 241
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.82 E-value=2.5e-18 Score=120.88 Aligned_cols=110 Identities=22% Similarity=0.237 Sum_probs=81.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC--------------------CCCCccceeEEEEeecCEEEEEEEcCCccchhHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSE--------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM 80 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~--------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 80 (184)
+|+++|++|+|||||+++++...... ....+.......+.+.++.+++|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997422110 0122333444556778899999999999988888
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+..+++.+|++++|+|+++......... +... . ..++|.++++||+|...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~~~-~---~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKL-WEFA-D---EAGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHH-H---HcCCCEEEEEECCccCC
Confidence 8888999999999999987655543322 2222 2 24789999999999764
No 242
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.82 E-value=6.2e-19 Score=121.48 Aligned_cols=155 Identities=22% Similarity=0.313 Sum_probs=112.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEeecCEE-EEEEEcCCccc-------hhHhHHhhccC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVT-IKLWDLGGQRR-------FRTMWERYCRG 87 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~-~~~~d~~g~~~-------~~~~~~~~~~~ 87 (184)
....|.++|-|++|||||++++...+...... +|.......+...+.. +.+-|.||.-+ .....-.+++.
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 34568999999999999999999766533322 3555555556655544 99999999333 23345566888
Q ss_pred CCEEEEEEeCCCC---CCHHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEe
Q 030000 88 VSAILYVVDAADR---DSVPIARSELHELLMK-PSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMI 161 (184)
Q Consensus 88 ~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
|+..++|+|++.. ..++.+...+.++-.+ ....+.|.++|+||+|+.+.+.- .++.+.+... .++++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~pv 347 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVPV 347 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEEe
Confidence 9999999999988 7777776666655333 33467899999999999643321 4455554432 48999
Q ss_pred eeccCCCHHHHHHHHHHH
Q 030000 162 SCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~~ 179 (184)
||+++++++++++-|.+.
T Consensus 348 sA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 348 SAKSGEGLEELLNGLREL 365 (366)
T ss_pred eeccccchHHHHHHHhhc
Confidence 999999999999988764
No 243
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.82 E-value=2.1e-18 Score=135.00 Aligned_cols=115 Identities=19% Similarity=0.159 Sum_probs=86.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC--------------------CCCCCccceeEEEEeecCEEEEEEEcCCcc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYS--------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 75 (184)
..+..+|+|+|++++|||||+++|+...-. ...+.|.......+.+.+.++++|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 345678999999999999999999732110 012234445566678889999999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
++.......++.+|++++|+|+.+....... ..+... .. .++|+++++||+|+..
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~-~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQA-NR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHH-HH---cCCCEEEEEECCCCCC
Confidence 9888888899999999999999876554432 222222 22 4689999999999865
No 244
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.81 E-value=1.4e-18 Score=107.42 Aligned_cols=164 Identities=16% Similarity=0.247 Sum_probs=122.1
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeE-EEEeec---CEEEEEEEcCCccch-hHhHHhhcc
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNM-RKVTKG---NVTIKLWDLGGQRRF-RTMWERYCR 86 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~-~~~~~~---~~~~~~~d~~g~~~~-~~~~~~~~~ 86 (184)
..+.+..||+|+|..++|||+++.+++.++... ...+|+.-.+ ..++.. .-.+.++||.|.... ..+-..+++
T Consensus 4 ~kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q 83 (198)
T KOG3883|consen 4 AKMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ 83 (198)
T ss_pred hhhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhc
Confidence 345677999999999999999999999766543 3345665333 333322 245889999997777 456667788
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH-HHHHHhCCCccCCCceeEEEeeecc
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
-+|++++||+..+++||+.....-..+-+......+|+++++||+|+.++.... ...+.+ .....+..+++++.+
T Consensus 84 ~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~W----a~rEkvkl~eVta~d 159 (198)
T KOG3883|consen 84 FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIW----AKREKVKLWEVTAMD 159 (198)
T ss_pred cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHH----HhhhheeEEEEEecc
Confidence 899999999999999999887766666666677789999999999997654321 112222 223345689999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030000 166 SINIDAVIDWLIKHSK 181 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~ 181 (184)
....-+.|.++...+-
T Consensus 160 R~sL~epf~~l~~rl~ 175 (198)
T KOG3883|consen 160 RPSLYEPFTYLASRLH 175 (198)
T ss_pred chhhhhHHHHHHHhcc
Confidence 9999999999887654
No 245
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=8.7e-19 Score=128.58 Aligned_cols=157 Identities=22% Similarity=0.254 Sum_probs=112.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEee---cCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+.+=|+++|+...|||||+..+...+...... -|..+-.+.+.. ....+.++|||||+.|..+...-..-+|.+|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 45678999999999999999998776543322 122222233333 4578999999999999999999888999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCC----CccCCCceeEEEeeeccCCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL----ESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|+++.-..+.... +++....++|+++++||+|..+... ......+.. .........++++||++|+|
T Consensus 84 LVVa~dDGv~pQTiEA-----I~hak~a~vP~iVAiNKiDk~~~np-~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 84 LVVAADDGVMPQTIEA-----INHAKAAGVPIVVAINKIDKPEANP-DKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEccCCcchhHHHH-----HHHHHHCCCCEEEEEecccCCCCCH-HHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 9999988644443332 2222336899999999999986433 333333322 12234567899999999999
Q ss_pred HHHHHHHHHHHh
Q 030000 169 IDAVIDWLIKHS 180 (184)
Q Consensus 169 i~~l~~~i~~~~ 180 (184)
+++|+..+.-..
T Consensus 158 i~eLL~~ill~a 169 (509)
T COG0532 158 IDELLELILLLA 169 (509)
T ss_pred HHHHHHHHHHHH
Confidence 999999887544
No 246
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.81 E-value=2.6e-18 Score=129.92 Aligned_cols=114 Identities=20% Similarity=0.282 Sum_probs=81.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc-CCCCCC-----------------------CCCccceeEEEEeecCEEEEEEEcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT-GGYSED-----------------------MIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~-~~~~~~-----------------------~~~t~~~~~~~~~~~~~~~~~~d~~ 72 (184)
.+..+|+++|++++|||||+++++. ...... ...++......+++.++.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999862 111100 0112223334577889999999999
Q ss_pred CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
|+.+|.......++.+|++++|+|+.+.-. .....++. .... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence 999888877778999999999999976422 22233332 3222 5789999999999853
No 247
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.81 E-value=5.7e-20 Score=119.68 Aligned_cols=125 Identities=21% Similarity=0.317 Sum_probs=75.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe---ecCEEEEEEEcCCccchhHhHHh---hccCCCEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT---KGNVTIKLWDLGGQRRFRTMWER---YCRGVSAI 91 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~d~~g~~~~~~~~~~---~~~~~~~~ 91 (184)
+.-.|+++|+.|||||+|..+|..+.......+. .... .+. .....+.++|+||+++.+..... +..++.++
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 3457999999999999999999988654433333 2222 222 24457899999999998875444 47889999
Q ss_pred EEEEeCCC-CCCHHHHHHHHHHHhcC--CCCCCCcEEEEEeCCCcccccCHHHHHH
Q 030000 92 LYVVDAAD-RDSVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSKQALVD 144 (184)
Q Consensus 92 i~v~d~~~-~~~~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~~~~~~~ 144 (184)
|||+|+.. ........+++..++.. .....+|+++++||+|+........+.+
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~ 135 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKK 135 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHH
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHH
Confidence 99999863 22334444444444332 2246899999999999987655444333
No 248
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.81 E-value=1.6e-18 Score=118.95 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=108.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC---CCccceeEEEEeecCEEEEEEEcCCccc------------hhHhH
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM---IPTVGFNMRKVTKGNVTIKLWDLGGQRR------------FRTMW 81 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~d~~g~~~------------~~~~~ 81 (184)
.+...|+|+|.|++|||||.|.+.+.+..... ..|.-.....+..+..++.++||||.-. +.+..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 46789999999999999999999988764332 2344456666788899999999999221 11123
Q ss_pred HhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-----------------HHHHH
Q 030000 82 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----------------QALVD 144 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----------------~~~~~ 144 (184)
...++++|.+++|+|+++....... ..+.....+ .++|-+++.||.|....... .++.+
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 3457789999999999864333222 222222222 57899999999997653211 11222
Q ss_pred HhCCCc---------cCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 145 QLGLES---------ITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 145 ~~~~~~---------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.+.... -....-.+|.+||++|+||+++-+++....+.
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 221110 01113358999999999999999999887654
No 249
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.81 E-value=1.1e-18 Score=129.57 Aligned_cols=163 Identities=17% Similarity=0.186 Sum_probs=105.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCC--CCCc--cceeEEE---------------Eee-------------
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY---SED--MIPT--VGFNMRK---------------VTK------------- 61 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~--~~~t--~~~~~~~---------------~~~------------- 61 (184)
...++|+++|+...|||||+.+|.+... .++ .+-| .|+.... ...
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 3578999999999999999999985322 111 1112 2222110 000
Q ss_pred ---cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC
Q 030000 62 ---GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 62 ---~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 138 (184)
....+.++|+||++.|.......+..+|++++|+|+.++.......+.+. +.... .-.++++++||+|+.+...
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCHHH
Confidence 02468999999999998888888889999999999986421122222222 22221 1246899999999975433
Q ss_pred HHHHHHHhCC--CccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 139 KQALVDQLGL--ESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 139 ~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..+..+.+.. ........+++++||++|+|++++++.|.+.++.
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 3222222211 0112246689999999999999999999976653
No 250
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.4e-19 Score=127.71 Aligned_cols=154 Identities=21% Similarity=0.151 Sum_probs=107.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc---------------------------------CCCCCCCCCccceeEEEEeec
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT---------------------------------GGYSEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~---------------------------------~~~~~~~~~t~~~~~~~~~~~ 62 (184)
.+.+++++++|+..+|||||+.+|+. .+..++.+-|+......++..
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 35789999999999999999999981 112233445777777778888
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCC-----HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS-----VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
.+.++++|+||+++|-..+.....++|+.|+|+|+.+.+. .....+.-..+.... .-..+|+++||+|+.+-.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccccC
Confidence 8999999999999999988888999999999999987631 111222222222222 245688999999998632
Q ss_pred C--H----HHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 138 S--K----QALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 138 ~--~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
. . .++...+....+.....+|+++|+.+|+|+.+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 1 1 12222111222333467899999999998764
No 251
>COG2262 HflX GTPases [General function prediction only]
Probab=99.80 E-value=7.1e-18 Score=120.32 Aligned_cols=156 Identities=23% Similarity=0.318 Sum_probs=114.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEeec-CEEEEEEEcCCc---------cchhHhHHhh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKG-NVTIKLWDLGGQ---------RRFRTMWERY 84 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~~d~~g~---------~~~~~~~~~~ 84 (184)
+..+.|.++|-.++|||||+|++.+.... .....|.+.....+... +..+.+-||.|- +.|++....
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE- 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE- 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH-
Confidence 35688999999999999999999965543 23346888888887766 588999999992 234444433
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
...+|.++.|+|++++.....+.. ...++...+...+|+++|.||+|+.............. + ..+.+||+
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~-------~-~~v~iSA~ 339 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS-------P-NPVFISAK 339 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC-------C-CeEEEEec
Confidence 457999999999999955444443 34455666667799999999999876554211111111 1 47899999
Q ss_pred cCCCHHHHHHHHHHHhhh
Q 030000 165 DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~ 182 (184)
+|+|++.+.+.|.+.+..
T Consensus 340 ~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 340 TGEGLDLLRERIIELLSG 357 (411)
T ss_pred cCcCHHHHHHHHHHHhhh
Confidence 999999999999998763
No 252
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.80 E-value=1.2e-18 Score=118.34 Aligned_cols=160 Identities=19% Similarity=0.260 Sum_probs=100.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEe-ecCEEEEEEEcCCccchhH-----hHHhhccCCCEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVT-KGNVTIKLWDLGGQRRFRT-----MWERYCRGVSAI 91 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~---~~~t~~~~~~~~~-~~~~~~~~~d~~g~~~~~~-----~~~~~~~~~~~~ 91 (184)
||+++|+.+|||||+.+.++.+-.+.+ ..+|.......+. .....+++||+||+..+.. .....++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 799999999999999999986654433 2367777777775 5678999999999876544 346678999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCcEEEEEeCCCcccccCHHHHHHHh----CC--CccCCCceeEEEeeec
Q 030000 92 LYVVDAADRDSVPIARSELHELLM-KPSLSGIPLLVLGNKIDKSEALSKQALVDQL----GL--ESITDREVCCYMISCK 164 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~Sa~ 164 (184)
|||+|+...+-...+......+.. ....+++.+.++++|+|+..+...++..+.. .. .........++.||..
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~ 160 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIW 160 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TT
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCc
Confidence 999999855544444333332211 1224689999999999997654432222211 11 0111124778999988
Q ss_pred cCCCHHHHHHHHHHHhh
Q 030000 165 DSINIDAVIDWLIKHSK 181 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~ 181 (184)
+ +.+.+.|..|...+.
T Consensus 161 D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 161 D-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp S-THHHHHHHHHHHTTS
T ss_pred C-cHHHHHHHHHHHHHc
Confidence 8 468888888887654
No 253
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.8e-18 Score=125.16 Aligned_cols=160 Identities=19% Similarity=0.249 Sum_probs=118.4
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCC----CCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCC
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSE----DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVS 89 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 89 (184)
...+++.-|.+||+...|||||+..|.+..... ...+.+|.....+. .+..+++.|||||..|..+..+-..-+|
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtD 226 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTD 226 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCcccc
Confidence 344567889999999999999999998665421 22344555555555 5588999999999999999999888999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCC----ccCCCceeEEEeeecc
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE----SITDREVCCYMISCKD 165 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~ 165 (184)
.+++|+.+.|.-..+... .+++...-++|+++++||+|.... +.++..+.+... +.....++++++||++
T Consensus 227 IvVLVVAadDGVmpQT~E-----aIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 227 IVVLVVAADDGVMPQTLE-----AIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred EEEEEEEccCCccHhHHH-----HHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 999999998864444332 333444468999999999997654 444444444322 2234578899999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030000 166 SINIDAVIDWLIKHS 180 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~ 180 (184)
|+|++.+.+.+.-..
T Consensus 301 g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 301 GENLDLLEEAILLLA 315 (683)
T ss_pred CCChHHHHHHHHHHH
Confidence 999999998876543
No 254
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.79 E-value=3.2e-18 Score=122.46 Aligned_cols=135 Identities=20% Similarity=0.270 Sum_probs=102.9
Q ss_pred CCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC----------CCHHHHHHHHHHHhcCCC
Q 030000 49 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR----------DSVPIARSELHELLMKPS 118 (184)
Q Consensus 49 ~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 118 (184)
.+|.|+....+...+..+.+||++|+...+..|..++.+++++++|+|+++. ..+......+..+++...
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 4577777777888899999999999999999999999999999999999874 456677777777777766
Q ss_pred CCCCcEEEEEeCCCccccc------------------CHHHHHHHhC----C-CccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 119 LSGIPLLVLGNKIDKSEAL------------------SKQALVDQLG----L-ESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 119 ~~~~~iivv~nK~D~~~~~------------------~~~~~~~~~~----~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
..++|+++++||.|+.... +.+...+.+. . .....+.+..+.++|.+-.++..+|+.
T Consensus 226 ~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~ 305 (317)
T cd00066 226 FANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDA 305 (317)
T ss_pred ccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHH
Confidence 6789999999999975421 1111111111 0 001235666788999999999999999
Q ss_pred HHHHhhhc
Q 030000 176 LIKHSKTA 183 (184)
Q Consensus 176 i~~~~~~~ 183 (184)
+.+.+...
T Consensus 306 v~~~i~~~ 313 (317)
T cd00066 306 VKDIILQN 313 (317)
T ss_pred HHHHHHHH
Confidence 99887653
No 255
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.78 E-value=7.3e-18 Score=121.52 Aligned_cols=134 Identities=19% Similarity=0.272 Sum_probs=102.3
Q ss_pred CCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC----------CCHHHHHHHHHHHhcCCC
Q 030000 49 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR----------DSVPIARSELHELLMKPS 118 (184)
Q Consensus 49 ~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 118 (184)
.+|.|+....+...+..+.+||.+|+...+..|..++.+++++++|+|+++. ..+......+..+++...
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 3577777777888889999999999999999999999999999999999863 467777777888887766
Q ss_pred CCCCcEEEEEeCCCccccc-----------------CHHHHHHH----hCCCcc--CCCceeEEEeeeccCCCHHHHHHH
Q 030000 119 LSGIPLLVLGNKIDKSEAL-----------------SKQALVDQ----LGLESI--TDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 119 ~~~~~iivv~nK~D~~~~~-----------------~~~~~~~~----~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
..++|+++++||.|+.... +.....+. +..... ..+.+..+.++|.+-.++..+|+.
T Consensus 249 ~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~ 328 (342)
T smart00275 249 FANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDA 328 (342)
T ss_pred ccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHH
Confidence 6789999999999986521 11111111 111111 234566788999999999999999
Q ss_pred HHHHhhh
Q 030000 176 LIKHSKT 182 (184)
Q Consensus 176 i~~~~~~ 182 (184)
+.+.+.+
T Consensus 329 v~~~I~~ 335 (342)
T smart00275 329 VKDIILQ 335 (342)
T ss_pred HHHHHHH
Confidence 8887754
No 256
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=2.8e-18 Score=124.00 Aligned_cols=157 Identities=21% Similarity=0.257 Sum_probs=117.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC-----------------CCCCCCCccce-----eEEEEeecCEEEEEEEcCCc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG-----------------YSEDMIPTVGF-----NMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~-----------------~~~~~~~t~~~-----~~~~~~~~~~~~~~~d~~g~ 74 (184)
++.-+.+++-+-..|||||..+++... ...+.+-|+.. .+..-+++++.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 445678999999999999999998321 22233333332 22222346699999999999
Q ss_pred cchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCcc
Q 030000 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESI 151 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~ 151 (184)
-+|.-...+.+.-|.+.++|+|++..---+.+...+..+- .+.-++.|+||+|++..+. .+++.+.++....
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~ 161 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS 161 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc
Confidence 9998888888888999999999987655555555555442 4788999999999987543 3566666666543
Q ss_pred CCCceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 152 TDREVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
..+.+|||+|.||+++++.|.+.++..
T Consensus 162 -----dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 162 -----DAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred -----hheeEecccCCCHHHHHHHHHhhCCCC
Confidence 478899999999999999999998764
No 257
>PRK12739 elongation factor G; Reviewed
Probab=99.77 E-value=2.4e-17 Score=129.02 Aligned_cols=114 Identities=20% Similarity=0.187 Sum_probs=85.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC--------C------------CCCCCccceeEEEEeecCEEEEEEEcCCccc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY--------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~--------~------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
.+..+|+++|++++|||||+++|+...- . ....-|.......+.+.+.+++++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 4567899999999999999999974210 0 1223455566667788899999999999998
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+...+...++.+|++++|+|+.+.-.... ...+... .. .++|.++++||+|+..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~-~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA-DK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH-HH---cCCCEEEEEECCCCCC
Confidence 88888889999999999999977543322 2222222 22 4689999999999875
No 258
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.77 E-value=1e-18 Score=128.88 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=120.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..+.+||+++|+.|+|||||+-++...+++....+-..... ..+.-..+...++|++..++.......-+++++++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 35679999999999999999999998888766554333222 2233445668999999877777777777999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCC--CCCCcEEEEEeCCCcccccCH--HH----HHHHhCCCccCCCceeEEEeeecc
Q 030000 94 VVDAADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALSK--QA----LVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+|+.+++++++.+...|...++... ..++|+|+|+||+|....... +. +...+... -..++|||++
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei------EtciecSA~~ 159 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI------ETCIECSALT 159 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH------HHHHhhhhhh
Confidence 9999999999999888888877644 357999999999998764432 11 11111111 1378999999
Q ss_pred CCCHHHHHHHHHHHh
Q 030000 166 SINIDAVIDWLIKHS 180 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~ 180 (184)
-.++.++|.+..+.+
T Consensus 160 ~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 160 LANVSELFYYAQKAV 174 (625)
T ss_pred hhhhHhhhhhhhhee
Confidence 999999998877655
No 259
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.77 E-value=1.4e-17 Score=102.76 Aligned_cols=104 Identities=24% Similarity=0.248 Sum_probs=71.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccch---------hHhHHhhccCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF---------RTMWERYCRGV 88 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~---------~~~~~~~~~~~ 88 (184)
+|+|+|.+|+|||||+|+|++.+. ......|....+..+...+..+.++||||.... .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 689999999999999999997532 223344555655666778888899999995321 11223335889
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 130 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK 130 (184)
|++++|+|+.++ .-......+..+ + .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~-~~~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNP-ITEDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSH-SHHHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHH-h----cCCCEEEEEcC
Confidence 999999997662 112222222323 2 58999999998
No 260
>PRK00007 elongation factor G; Reviewed
Probab=99.76 E-value=3.5e-17 Score=128.13 Aligned_cols=115 Identities=19% Similarity=0.194 Sum_probs=84.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc--CCC------C------------CCCCCccceeEEEEeecCEEEEEEEcCCcc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT--GGY------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~--~~~------~------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 75 (184)
..+..+|+++|++++|||||+++|+. +.. . .....|.......+.+.+..++++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 34567899999999999999999973 111 0 122335555556677889999999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
++.......+..+|++++|+|+...-..+. ...+.... . .++|.++++||+|+..
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~-~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQAD-K---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHH-H---cCCCEEEEEECCCCCC
Confidence 888878888999999999999876533332 22222222 2 4689999999999864
No 261
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.76 E-value=6.3e-17 Score=108.82 Aligned_cols=162 Identities=15% Similarity=0.054 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEeecCEEEEEEEcCCccchh-------HhH----Hhh
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDM----IPTVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TMW----ERY 84 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~----~~~ 84 (184)
.+|+++|.+|+|||||+|++++....... +.|...........+..+.++||||..+.. ... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 47999999999999999999977643222 345555555666778899999999944321 111 122
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccccCHHHHHHHhC-----CCccCCCceeE
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQALVDQLG-----LESITDREVCC 158 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 158 (184)
..+.|++++|+++.+ .+.. ....+..+..... ..-.++++++|++|.......++...... +.......+..
T Consensus 81 ~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 457899999999876 2222 1222222222111 11257899999999876544333222111 00000111112
Q ss_pred EE-e--eeccCCCHHHHHHHHHHHhhhc
Q 030000 159 YM-I--SCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 159 ~~-~--Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
|. . |+..+.++.++++.|.+.++.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 22 1 2566789999999999988763
No 262
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=9.3e-17 Score=116.67 Aligned_cols=165 Identities=19% Similarity=0.174 Sum_probs=111.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccch-hH--------hHHhh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF-RT--------MWERY 84 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~-~~--------~~~~~ 84 (184)
+..++|+++|+||+|||||+|.|.+.+. .+..+.|.+.....++..++++.+.||+|..+- .. -....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 4679999999999999999999997764 345566777777788899999999999996651 11 12234
Q ss_pred ccCCCEEEEEEeCC--CCCCHHHHHHHHHHHhc-----CCCCCCCcEEEEEeCCCcccccCH-HH-HHHHhCCCccCCCc
Q 030000 85 CRGVSAILYVVDAA--DRDSVPIARSELHELLM-----KPSLSGIPLLVLGNKIDKSEALSK-QA-LVDQLGLESITDRE 155 (184)
Q Consensus 85 ~~~~~~~i~v~d~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~iivv~nK~D~~~~~~~-~~-~~~~~~~~~~~~~~ 155 (184)
++.+|++++|+|+. +-++-..+...+...-. -....+.|++++.||.|+..+-.. .. ....... ......
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCccc
Confidence 77899999999993 33333333333333211 122356899999999999775211 11 1111111 111222
Q ss_pred eeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 156 VCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 156 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
....++|+++++|++.+.+.+.+.+..
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 235559999999999999999887653
No 263
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.74 E-value=4.2e-17 Score=117.81 Aligned_cols=161 Identities=20% Similarity=0.290 Sum_probs=119.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC------------------CCCCCCCccceeEEEEeecCEEEEEEEcCCccchhH
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGG------------------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 79 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~------------------~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 79 (184)
+--+|+++-+...|||||+..++.+. ...+.+-|+-..-..+.+.++.++++|||||.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 34579999999999999999999432 111222233344445788999999999999999999
Q ss_pred hHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCC---C--ccCCC
Q 030000 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL---E--SITDR 154 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~---~--~~~~~ 154 (184)
..+..+.=.|++++++|+.+. .....+..+.+.+.. +.+.|+|+||+|........-..+.+.+ . .....
T Consensus 84 EVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 999999999999999999865 455566666666665 6777889999998775443222222221 1 12235
Q ss_pred ceeEEEeeeccCC----------CHHHHHHHHHHHhhhc
Q 030000 155 EVCCYMISCKDSI----------NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 155 ~~~~~~~Sa~~~~----------~i~~l~~~i~~~~~~~ 183 (184)
.+|++..|++.|. ++..+|+.|.++++..
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 7789999998775 7889999999998764
No 264
>PRK12740 elongation factor G; Reviewed
Probab=99.74 E-value=1.2e-16 Score=125.11 Aligned_cols=106 Identities=22% Similarity=0.202 Sum_probs=79.8
Q ss_pred EcCCCCCHHHHHHHHhcCCCC--------------------CCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhh
Q 030000 25 IGLQNAGKTSLVNTIATGGYS--------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERY 84 (184)
Q Consensus 25 ~G~~~~GKstli~~~~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 84 (184)
+|++++|||||+++|+...-. .....|.+.....+.+.++.+++|||||+.++...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999632110 012335556666788899999999999999888888888
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+..+|++++|+|++.......... +.... ..++|+++++||+|...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~-~~~~~----~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETV-WRQAE----KYGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHH-HHHHH----HcCCCEEEEEECCCCCC
Confidence 999999999999987665543322 22222 24789999999999864
No 265
>PRK09866 hypothetical protein; Provisional
Probab=99.74 E-value=3.4e-16 Score=118.15 Aligned_cols=112 Identities=20% Similarity=0.182 Sum_probs=73.4
Q ss_pred EEEEEEEcCCccc-----hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC
Q 030000 64 VTIKLWDLGGQRR-----FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 64 ~~~~~~d~~g~~~-----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 138 (184)
.++.++||||... ........+..+|++++|+|+...-+... ..+...++..+ .+.|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 5688999999643 23345567899999999999976544332 23333333321 1369999999999864222
Q ss_pred --HHHHHHHhCC--CccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 139 --KQALVDQLGL--ESITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 139 --~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
.+.+.+.+.. .........+|++||+.|.|++++++.|..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 3333333211 111223446999999999999999999876
No 266
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.74 E-value=1e-16 Score=111.05 Aligned_cols=153 Identities=22% Similarity=0.217 Sum_probs=109.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEeecCEEEEEEEcCCccchh-------HhHHhhccCCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRRFR-------TMWERYCRGVS 89 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~~ 89 (184)
..+|+++|.|++|||||++.+.+.+...... +|.......+++.+.++++.|+||.-... .......++||
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD 142 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence 4789999999999999999999876654433 46666777789999999999999833221 33445688999
Q ss_pred EEEEEEeCCCCCC-HHHHHHHHHHH----------------------------------------hcC------------
Q 030000 90 AILYVVDAADRDS-VPIARSELHEL----------------------------------------LMK------------ 116 (184)
Q Consensus 90 ~~i~v~d~~~~~~-~~~~~~~~~~~----------------------------------------~~~------------ 116 (184)
.+++|+|+..... .+.+...+... ++.
T Consensus 143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~ 222 (365)
T COG1163 143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE 222 (365)
T ss_pred EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence 9999999985433 33333333221 000
Q ss_pred ------------CCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 117 ------------PSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 117 ------------~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.+..-+|.++|.||.|+...+....+.+.. ..+.+||+.+.|++++.+.|.+.+.
T Consensus 223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred CCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 001247889999999997755444444433 4899999999999999999988764
No 267
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=3.3e-17 Score=111.30 Aligned_cols=166 Identities=17% Similarity=0.250 Sum_probs=108.4
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeE-EEEeecCEEEEEEEcCCccc-------hhHhHHh
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNM-RKVTKGNVTIKLWDLGGQRR-------FRTMWER 83 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~-~~~~~~~~~~~~~d~~g~~~-------~~~~~~~ 83 (184)
+....+++|+++|..|+|||||||+++.++..+.. +.+..+.. .......-.+.+||+||..+ ++.....
T Consensus 34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHH
Confidence 34567899999999999999999999965543322 11221111 11223345689999999554 5666777
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc------------CHHHHHH-HhC-CC
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL------------SKQALVD-QLG-LE 149 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~------------~~~~~~~-~~~-~~ 149 (184)
++...|.+++++++.++.--.....+..-+... .+.++++++|.+|...+. ...++.+ +.. ..
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~---~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~ 190 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDFLRDVIILG---LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG 190 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHHHHHHHHhc---cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 889999999999998765443333333323222 348999999999987652 0111111 110 00
Q ss_pred ccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 150 SITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.....-.|++..|...++|+.++...++..++.
T Consensus 191 ~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 191 RLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 011123478889999999999999999988764
No 268
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.73 E-value=7.9e-20 Score=116.42 Aligned_cols=160 Identities=21% Similarity=0.262 Sum_probs=123.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEeec---CEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG---NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
-++++|+|..|+|||+++.+.+...+...+..|+|.... ...+. -+.+.+||.+||+++..+..-+++.+++.++
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i 104 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI 104 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence 489999999999999999999999888888888885443 23333 3567899999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCC---CCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 94 VVDAADRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
|||.++..+|+....|...+-... ...-+|+++..||||...... ...+.+....... .--+++|+|.+.
T Consensus 105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf----~gwtets~Kenk 180 (229)
T KOG4423|consen 105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF----EGWTETSAKENK 180 (229)
T ss_pred EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc----cceeeecccccc
Confidence 999999999999999988774432 234478899999999754221 1222222222211 136899999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
||+|+-..+.+++.-
T Consensus 181 ni~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 181 NIPEAQRELVEKILV 195 (229)
T ss_pred ChhHHHHHHHHHHHh
Confidence 999999999888753
No 269
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.73 E-value=4.7e-16 Score=110.80 Aligned_cols=155 Identities=23% Similarity=0.307 Sum_probs=96.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC------CCCccceeEEEE-------------------e-ecCEEEEEEEcCCc-
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSED------MIPTVGFNMRKV-------------------T-KGNVTIKLWDLGGQ- 74 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~------~~~t~~~~~~~~-------------------~-~~~~~~~~~d~~g~- 74 (184)
|+++|.+++|||||++++.+...... ..++.|...... + .....+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998765321 223333332210 1 13367999999997
Q ss_pred ---cchhHhHH---hhccCCCEEEEEEeCCCC-------------CCHHHH---HHHHHH--------------------
Q 030000 75 ---RRFRTMWE---RYCRGVSAILYVVDAADR-------------DSVPIA---RSELHE-------------------- 112 (184)
Q Consensus 75 ---~~~~~~~~---~~~~~~~~~i~v~d~~~~-------------~~~~~~---~~~~~~-------------------- 112 (184)
+++..... ..++++|++++|+|+... +....+ ...+..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44444333 358999999999999631 111111 110000
Q ss_pred ------------------------HhcC-C--------------------CCCCCcEEEEEeCCCcccccCHHHHHHHhC
Q 030000 113 ------------------------LLMK-P--------------------SLSGIPLLVLGNKIDKSEALSKQALVDQLG 147 (184)
Q Consensus 113 ------------------------~~~~-~--------------------~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 147 (184)
.+.. . ....+|+++++||+|+..... ..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~---~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN---NISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH---HHHHHH
Confidence 0000 0 123579999999999754322 222222
Q ss_pred CCccCCCceeEEEeeeccCCCHHHHHH-HHHHHhhh
Q 030000 148 LESITDREVCCYMISCKDSINIDAVID-WLIKHSKT 182 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~-~i~~~~~~ 182 (184)
. ......++.+||+.+.++.++.+ .+.+.++.
T Consensus 238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 1 11244699999999999999998 68888754
No 270
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1.7e-16 Score=110.79 Aligned_cols=161 Identities=23% Similarity=0.238 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEee-cCEEEEEEEcCCccc-------hhHhHHhhccCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTK-GNVTIKLWDLGGQRR-------FRTMWERYCRGVS 89 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~-~~~~~~~~d~~g~~~-------~~~~~~~~~~~~~ 89 (184)
..|.++|-|++|||||++.+...+...... +|.-.+...++. ..-.+.+-|.||.-+ .....-.++++|.
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 457899999999999999999766543332 455566666664 445699999999433 2223445678899
Q ss_pred EEEEEEeCCCCCC---HHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCccc-ccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 90 AILYVVDAADRDS---VPIARSELHELLMK-PSLSGIPLLVLGNKIDKSE-ALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 90 ~~i~v~d~~~~~~---~~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+++.|+|++..+. .+.......++..+ ....+.|.++|+||+|+.. .+..+++.+.+..... ....++ +|+.
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~--~~~~~~-ISa~ 316 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALG--WEVFYL-ISAL 316 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcC--CCccee-eehh
Confidence 9999999986543 44444444444333 3345789999999999544 4455555555543211 111222 9999
Q ss_pred cCCCHHHHHHHHHHHhhhc
Q 030000 165 DSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~~ 183 (184)
+++|++++...+.+.+.+.
T Consensus 317 t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 317 TREGLDELLRALAELLEET 335 (369)
T ss_pred cccCHHHHHHHHHHHHHHh
Confidence 9999999999998887654
No 271
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.71 E-value=3.8e-16 Score=109.76 Aligned_cols=115 Identities=16% Similarity=0.253 Sum_probs=72.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCCccceeEE--EEeecC--EEEEEEEcCCccchhH---hH
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSED----------MIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRT---MW 81 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~----------~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~---~~ 81 (184)
.++|+++|++|+|||||+|++++..+... ..+|...... .+...+ +.+.+|||||...... .|
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999999999998876543 2334443332 233333 6799999999322110 00
Q ss_pred ------------------H-----hhcc--CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 82 ------------------E-----RYCR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 82 ------------------~-----~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
. ..+. ++|+++|+++.+.. .+......+...+. .++|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCCH
Confidence 0 1122 36778888887642 23333222222322 26899999999999664
Q ss_pred cC
Q 030000 137 LS 138 (184)
Q Consensus 137 ~~ 138 (184)
.+
T Consensus 159 ~e 160 (276)
T cd01850 159 EE 160 (276)
T ss_pred HH
Confidence 43
No 272
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.70 E-value=1.1e-16 Score=95.75 Aligned_cols=138 Identities=17% Similarity=0.184 Sum_probs=94.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCC----ccchhHhHHhhccCCCEEEEEEe
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----QRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g----~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
|++++|..|+|||||.+.+.+...... .|....+. + =-.+|||| +..+.+.......++|++++|-.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQAve~~-----d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQAVEFN-----D--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--ccceeecc-----C--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 689999999999999999975543221 22221111 0 11478998 44454545556788999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
++++.+.-.-. +. .....|+|-+++|+|+.+..+.....+.+.... .-++|.+|+.++.|++++++++
T Consensus 74 and~~s~f~p~--f~------~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----a~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 74 ANDPESRFPPG--FL------DIGVKKVIGVVTKADLAEDADISLVKRWLREAG----AEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred ccCccccCCcc--cc------cccccceEEEEecccccchHhHHHHHHHHHHcC----CcceEEEeccCcccHHHHHHHH
Confidence 98875432111 11 123566999999999998666655555554322 2369999999999999999998
Q ss_pred HHH
Q 030000 177 IKH 179 (184)
Q Consensus 177 ~~~ 179 (184)
...
T Consensus 142 ~~~ 144 (148)
T COG4917 142 ASL 144 (148)
T ss_pred Hhh
Confidence 754
No 273
>PRK13768 GTPase; Provisional
Probab=99.69 E-value=6.8e-17 Score=112.27 Aligned_cols=119 Identities=18% Similarity=0.103 Sum_probs=76.6
Q ss_pred EEEEEEEcCCccchh---HhHHh---hccC--CCEEEEEEeCCCCCCHHHHHHHHH-HHhcCCCCCCCcEEEEEeCCCcc
Q 030000 64 VTIKLWDLGGQRRFR---TMWER---YCRG--VSAILYVVDAADRDSVPIARSELH-ELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~---~~~~~---~~~~--~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
..+.+||+||+.+.. ..+.. .+.. .+++++++|+.............. ...... ..++|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhc
Confidence 468999999976643 22222 2333 789999999976554433322211 111111 1479999999999998
Q ss_pred cccCHHHHHHHhCC--------Cc-----------------cCCCceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 135 EALSKQALVDQLGL--------ES-----------------ITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 135 ~~~~~~~~~~~~~~--------~~-----------------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
+..+.++..+.+.. .. ......+++++|+++++|+++++++|.+.++..
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 76655554443331 00 001235789999999999999999999887643
No 274
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.68 E-value=8.6e-17 Score=117.07 Aligned_cols=178 Identities=20% Similarity=0.158 Sum_probs=121.2
Q ss_pred hHHHHHHHHhhhh--ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEeecCEEEEEEEcCCccc--
Q 030000 3 FLDSILNWLRSLF--FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRR-- 76 (184)
Q Consensus 3 ~~~~~~~~~~~~~--~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~-- 76 (184)
.|++.++++.+++ ..+.-+++++|-+++|||||++.+........+. +|.+.....+...-..+++.||||.-+
T Consensus 150 yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~p 229 (620)
T KOG1490|consen 150 YLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRP 229 (620)
T ss_pred HHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcc
Confidence 5788899998886 5577889999999999999999998766544333 455666677777778899999999221
Q ss_pred --hhHhHH----hhcc-CCCEEEEEEeCCC--CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhC
Q 030000 77 --FRTMWE----RYCR-GVSAILYVVDAAD--RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG 147 (184)
Q Consensus 77 --~~~~~~----~~~~-~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 147 (184)
.+..+. .++. -..+|+|+.|++. ..+.......+..+- ....+.|.|+|+||+|+...++..+-.+.+-
T Consensus 230 lEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIK--pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll 307 (620)
T KOG1490|consen 230 EEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIK--PLFANKVTILVLNKIDAMRPEDLDQKNQELL 307 (620)
T ss_pred hhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhH--HHhcCCceEEEeecccccCccccCHHHHHHH
Confidence 112111 1222 2346899999975 445555555555442 1224789999999999987766533332222
Q ss_pred CCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 148 LESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
........++++++|..+.+|+.++-+...+.+..
T Consensus 308 ~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 308 QTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred HHHHhccCceEEEecccchhceeeHHHHHHHHHHH
Confidence 11122334689999999999998877776666544
No 275
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.68 E-value=9e-16 Score=108.96 Aligned_cols=136 Identities=18% Similarity=0.290 Sum_probs=102.9
Q ss_pred CCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC----------CHHHHHHHHHHHhcCC
Q 030000 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD----------SVPIARSELHELLMKP 117 (184)
Q Consensus 48 ~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~ 117 (184)
..+|.|+....+..++..+.+.|.+||..-+.-|...+.+++++++|+++++.+ ........+..+.+..
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 457889999999999999999999999999999999999999999999998532 3444566667777777
Q ss_pred CCCCCcEEEEEeCCCccccc-----------------CHHHHHHHhC----C-CccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 118 SLSGIPLLVLGNKIDKSEAL-----------------SKQALVDQLG----L-ESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 118 ~~~~~~iivv~nK~D~~~~~-----------------~~~~~~~~~~----~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
.-.+.++|+++||.|+.++. ..++..+.+. . .....+....+.++|.+-.+|+.+|+.
T Consensus 259 ~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~a 338 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDA 338 (354)
T ss_pred ccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHH
Confidence 77889999999999987631 1111111111 1 111114556777899999999999999
Q ss_pred HHHHhhhc
Q 030000 176 LIKHSKTA 183 (184)
Q Consensus 176 i~~~~~~~ 183 (184)
+.+.+...
T Consensus 339 v~d~Ii~~ 346 (354)
T KOG0082|consen 339 VTDTIIQN 346 (354)
T ss_pred HHHHHHHH
Confidence 99887653
No 276
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.67 E-value=8e-16 Score=109.77 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=69.8
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-- 139 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-- 139 (184)
.++.+.++||+|...-... ....+|.++++.+....+.+...... .+ ....++|+||+|+.+....
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~g---i~------E~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKG---IM------ELADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhh---hh------hhhheEEeehhcccchhHHHH
Confidence 4588999999997633322 35569999999875444344332221 11 2224899999998765433
Q ss_pred --HHHHHHhCCCccC--CCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 140 --QALVDQLGLESIT--DREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 140 --~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.++.+.+...... ....+++.+||++|.|++++++.|.++.+
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3333333332111 12257999999999999999999998765
No 277
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.66 E-value=3.7e-16 Score=106.06 Aligned_cols=117 Identities=19% Similarity=0.127 Sum_probs=79.5
Q ss_pred CEEEEEEEcCCccchhHhH------Hhhc--cCCCEEEEEEeCC---CCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 030000 63 NVTIKLWDLGGQRRFRTMW------ERYC--RGVSAILYVVDAA---DRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~------~~~~--~~~~~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 131 (184)
..++.++|||||-+..... ...+ ...-+++|++|.. ++.+|.....+...++-+ .+.|++++.||+
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~ 191 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKT 191 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecc
Confidence 3668999999987643211 1112 2345788999964 566777777777777655 679999999999
Q ss_pred CcccccCHHH-------HHHHhCC--Ccc--------------CCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 132 DKSEALSKQA-------LVDQLGL--ESI--------------TDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 132 D~~~~~~~~~-------~~~~~~~--~~~--------------~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
|+....-..+ +.+.+.. ..+ ..+....+.+|+.+|+|.++.|..+.+.+..
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 9987654322 2222221 000 0145678999999999999999999887653
No 278
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.64 E-value=2e-14 Score=105.40 Aligned_cols=79 Identities=23% Similarity=0.314 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEe------------------------ecCEEEEEEEcCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVT------------------------KGNVTIKLWDLGG 73 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~------------------------~~~~~~~~~d~~g 73 (184)
++|+++|.+++|||||+|++.+........ .|......... .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999877643222 23332222211 1236689999999
Q ss_pred cc----chhHh---HHhhccCCCEEEEEEeCC
Q 030000 74 QR----RFRTM---WERYCRGVSAILYVVDAA 98 (184)
Q Consensus 74 ~~----~~~~~---~~~~~~~~~~~i~v~d~~ 98 (184)
.. ..... .-..++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 23232 333488999999999996
No 279
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.63 E-value=5.7e-15 Score=116.19 Aligned_cols=113 Identities=20% Similarity=0.241 Sum_probs=80.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC---------------CCCC---CCCCccceeE----EEEeecCEEEEEEEcCCcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG---------------GYSE---DMIPTVGFNM----RKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~---------------~~~~---~~~~t~~~~~----~~~~~~~~~~~~~d~~g~~ 75 (184)
+..+|+++|+.++|||||+++++.. ++.. ....|+.... ..+++.++.+++|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4579999999999999999999742 1111 1222433222 2356778999999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+|.......++.+|++++|+|+.+.-.... ...+..... .+.|.++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 998888889999999999999976433222 222222222 4678899999999854
No 280
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.62 E-value=3.7e-15 Score=104.52 Aligned_cols=150 Identities=15% Similarity=0.097 Sum_probs=103.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC-----------------------------------CCCCCCCccceeEEEEee
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG-----------------------------------YSEDMIPTVGFNMRKVTK 61 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~-----------------------------------~~~~~~~t~~~~~~~~~~ 61 (184)
+...+++-+|+..-||||||.+|+.+. .+.+++-|++..+..+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 456899999999999999999999211 123355577788888888
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--H
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--K 139 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~ 139 (184)
...+|.+-|||||++|-..+..-..-||+.|+++|+-. ......+--..+.... .-..+++++||+|+.+-.. .
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHHH
Confidence 89999999999999999988888888999999999943 3333322222222221 2345788899999977432 2
Q ss_pred HHHHHHhCC--CccCCCceeEEEeeeccCCCHH
Q 030000 140 QALVDQLGL--ESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 140 ~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+++.+.+.. ..+......++++||..|+|+-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 232222211 1122334479999999999875
No 281
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.61 E-value=2.6e-14 Score=114.62 Aligned_cols=145 Identities=18% Similarity=0.193 Sum_probs=92.3
Q ss_pred CHHHHHHHHhcCCCCCCC----CCccceeEEEEee----------------cCEEEEEEEcCCccchhHhHHhhccCCCE
Q 030000 31 GKTSLVNTIATGGYSEDM----IPTVGFNMRKVTK----------------GNVTIKLWDLGGQRRFRTMWERYCRGVSA 90 (184)
Q Consensus 31 GKstli~~~~~~~~~~~~----~~t~~~~~~~~~~----------------~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 90 (184)
+||||+.++.+.+..... .+.+|......+. ....+.+|||||++.|.......+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 399999999977664322 2233433322221 01238999999999998888888888999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC------------------HHHHHHH-------
Q 030000 91 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS------------------KQALVDQ------- 145 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~------------------~~~~~~~------- 145 (184)
+++|+|+++.-..+... .+ ..+.. .++|+++++||+|+..... .+++.+.
T Consensus 553 vlLVVDa~~Gi~~qT~e-~I-~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~ 627 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIE-AI-NILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK 627 (1049)
T ss_pred EEEEEECcccCCHhHHH-HH-HHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence 99999998632222111 11 22222 3689999999999864211 1111111
Q ss_pred ---hCCC-------ccCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 146 ---LGLE-------SITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 146 ---~~~~-------~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
.+.. .-.....+++++||++|+|+++++.++....
T Consensus 628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 1110 0113467899999999999999999886543
No 282
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.61 E-value=1.9e-14 Score=98.52 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=85.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.....|+++|.+|+|||||++.+.............|. .......+.++.++|+||.. .......+.+|++++++|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviD 112 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI---NAMIDIAKVADLVLLLID 112 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEe
Confidence 45677999999999999999999854222111122221 12233467889999999864 223344678999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcE-EEEEeCCCcccccC-HHHHHHHhCCCc--cCCCceeEEEeeeccCC
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPL-LVLGNKIDKSEALS-KQALVDQLGLES--ITDREVCCYMISCKDSI 167 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~ 167 (184)
+........ ..+...+.. .+.|. ++++||+|+.+... .++..+.+.... ....+.+++.+||+++.
T Consensus 113 a~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 113 ASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred cCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 976443322 222223322 35674 45999999874322 222222221100 01234589999998874
No 283
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.2e-14 Score=100.87 Aligned_cols=164 Identities=21% Similarity=0.222 Sum_probs=111.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCC--cc--ceeEE------------------EEe------ecCEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG---YSEDMIP--TV--GFNMR------------------KVT------KGNVT 65 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~---~~~~~~~--t~--~~~~~------------------~~~------~~~~~ 65 (184)
...++|.++|+...|||||..++.+-- +..+... |+ |+... ... .--..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 468999999999999999999997311 1000000 00 00000 000 01145
Q ss_pred EEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHH
Q 030000 66 IKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ 145 (184)
Q Consensus 66 ~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~ 145 (184)
+.++|.||++-....+-+-..-.|+.++|++++.+.......+.+..+ ... .-..++++-||+|+...+...+..+.
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIi--gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EII--GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhh--ccceEEEEecccceecHHHHHHHHHH
Confidence 889999999988776666666679999999999887777776665544 221 23568899999999876554333333
Q ss_pred hCC--CccCCCceeEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 146 LGL--ESITDREVCCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 146 ~~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
+.. ...-..+.|++++||..+.||+.++++|.+.++..
T Consensus 165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 321 12223567899999999999999999999988753
No 284
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.61 E-value=6.6e-14 Score=96.83 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=74.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEeecCEEEEEEEcCCccchh--H--------hHH
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR--T--------MWE 82 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~--~--------~~~ 82 (184)
....++|+++|.+|+|||||+|++++...... ...|...........+..+.+|||||..... . ...
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 35679999999999999999999998764322 1234444444455677889999999965431 0 122
Q ss_pred hhcc--CCCEEEEEEeCCCCCCHHHHH-HHHHHHhcCCC-CCCCcEEEEEeCCCccccc
Q 030000 83 RYCR--GVSAILYVVDAADRDSVPIAR-SELHELLMKPS-LSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 83 ~~~~--~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~ 137 (184)
.++. ..+++++|..++.. ++.... ..+..+....+ .--.++++|.||+|...+.
T Consensus 108 ~~l~~~~idvIL~V~rlD~~-r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMY-RRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHhccCCCEEEEEEcCCCC-CCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 2332 56788888766533 222222 22222222111 1124699999999987543
No 285
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.8e-15 Score=110.31 Aligned_cols=156 Identities=19% Similarity=0.135 Sum_probs=106.3
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhc---------------------------------CCCCCCCCCccceeEEEEee
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIAT---------------------------------GGYSEDMIPTVGFNMRKVTK 61 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~---------------------------------~~~~~~~~~t~~~~~~~~~~ 61 (184)
..+.++..+|+|+..+|||||+.+++. .+-.+..+-|+......++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 334678999999999999999999981 11222333455555556777
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC---CHH--HHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SVP--IARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
....+++.|+||+..|-..+.....++|+.++|+|++... .|+ ...+....+++..+ -..++|++||.|+..-
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSW 330 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCc
Confidence 7889999999999999998888889999999999997421 111 11223333444433 4568999999999763
Q ss_pred c--CHHHHHHHhC-----CCccCCCceeEEEeeeccCCCHHHH
Q 030000 137 L--SKQALVDQLG-----LESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 137 ~--~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
. ..+++...+. ........+.+++||+.+|+|+...
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 2 2233332222 2223345567999999999987644
No 286
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.61 E-value=1.4e-14 Score=98.39 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEeecCEEEEEEEcCCccc-------hhHhHH----hh
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDM----IPTVGFNMRKVTKGNVTIKLWDLGGQRR-------FRTMWE----RY 84 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~~~~----~~ 84 (184)
.+|+++|..||||||++|.+++....... ..|...........+..+.++||||..+ ....+. ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 48999999999999999999987654332 2355555566678889999999999322 111111 22
Q ss_pred ccCCCEEEEEEeCCCCCCHHH--HHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHH-----hC-CCccCCCce
Q 030000 85 CRGVSAILYVVDAADRDSVPI--ARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ-----LG-LESITDREV 156 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~-----~~-~~~~~~~~~ 156 (184)
..+.+++++|++.... +... .-.++..++... --..++|++|..|.......+++.+. +. +......
T Consensus 81 ~~g~ha~llVi~~~r~-t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~-- 155 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRF-TEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG-- 155 (212)
T ss_dssp TT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred cCCCeEEEEEEecCcc-hHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC--
Confidence 4568999999998722 2111 122222222211 12358889999998776654333331 11 1111112
Q ss_pred eEEEeeec------cCCCHHHHHHHHHHHhhhc
Q 030000 157 CCYMISCK------DSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 157 ~~~~~Sa~------~~~~i~~l~~~i~~~~~~~ 183 (184)
.++..+.+ ....+.++++.|-+.+..+
T Consensus 156 R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 156 RYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 24433333 3456888998888887765
No 287
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.60 E-value=1.1e-15 Score=104.99 Aligned_cols=116 Identities=18% Similarity=0.108 Sum_probs=60.9
Q ss_pred EEEEEEcCCccchhHhHHhhc--------cCCCEEEEEEeCCCCCCHHHHHHH-HHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 65 TIKLWDLGGQRRFRTMWERYC--------RGVSAILYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 65 ~~~~~d~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
.+.++|||||.++...+...- ...-++++++|+....+....... +... ...-..+.|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~-s~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSL-SIMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHH-HHHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHH-HHHhhCCCCEEEeeeccCccc
Confidence 689999999998766555432 234478999998765553332221 1111 101114799999999999977
Q ss_pred cc---------CH-----------HHHHHHhCCCccCCCce-eEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 136 AL---------SK-----------QALVDQLGLESITDREV-CCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 136 ~~---------~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.. +. ..+.+.+...-...... .++.+|+++++++.+++..|-+.++
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 22 00 11111111101111223 6999999999999999999988764
No 288
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.60 E-value=3.7e-14 Score=111.92 Aligned_cols=112 Identities=23% Similarity=0.240 Sum_probs=77.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC--CC----------------CCCccceeEEE----EeecCEEEEEEEcCCcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS--ED----------------MIPTVGFNMRK----VTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~----------------~~~t~~~~~~~----~~~~~~~~~~~d~~g~~ 75 (184)
+..+|+++|+.++|||||+.+++...-. .. ..-|+...... ....++.++++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4567999999999999999999842210 00 00122211111 23357889999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
+|.......++.+|++++|+|+...-... ....+..... .+.|.++++||+|..
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhh
Confidence 99888888999999999999987653332 2233333222 256789999999975
No 289
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.59 E-value=1.3e-14 Score=104.39 Aligned_cols=160 Identities=16% Similarity=0.238 Sum_probs=84.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccce-----eEEEEeecC-EEEEEEEcCCccchhHhHHhh-----
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGF-----NMRKVTKGN-VTIKLWDLGGQRRFRTMWERY----- 84 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~-----~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~----- 84 (184)
.+..++|+|+|.+|+|||||||++.+-+.........|. ....+.... ..+.+||.||...-......|
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 346799999999999999999999864433222222221 112233332 349999999954322222222
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCc--ccc-------cC----HHHH----HHHhC
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK--SEA-------LS----KQAL----VDQLG 147 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~--~~~-------~~----~~~~----~~~~~ 147 (184)
+...|.+|++.+- .|....-++...+.. .++|+.+|-||+|. .+. .. .+++ .+.+.
T Consensus 112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 112 FYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp GGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence 4567988887763 455555555555444 57999999999996 111 01 1221 22222
Q ss_pred CCccCCCceeEEEeeecc--CCCHHHHHHHHHHHhhhcC
Q 030000 148 LESITDREVCCYMISCKD--SINIDAVIDWLIKHSKTAK 184 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~--~~~i~~l~~~i~~~~~~~~ 184 (184)
. ......++|.+|..+ ..++..+.+.+.+.++..|
T Consensus 185 k--~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 185 K--AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp C--TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred H--cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 1 222445688898865 4578899999988877653
No 290
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.59 E-value=4.3e-14 Score=94.85 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=64.4
Q ss_pred EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--cCHHH
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQA 141 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~ 141 (184)
....++++.|.......... + ++.+|.|+|+.+...... .....+ ...-++++||+|+.+. .....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~-l--~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE-L--ADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccchh-h--hCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHH
Confidence 56677888884322222111 1 577999999976554321 100111 1223889999999753 33444
Q ss_pred HHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 142 LVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
..+..... ....+++++|+++|+|++++++++.+.+.
T Consensus 160 ~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 160 MERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44444322 23467999999999999999999998764
No 291
>PTZ00416 elongation factor 2; Provisional
Probab=99.58 E-value=3.5e-14 Score=113.22 Aligned_cols=113 Identities=21% Similarity=0.197 Sum_probs=79.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC---C---------------CCCccceeEEEEeec----------CEEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSE---D---------------MIPTVGFNMRKVTKG----------NVTIKL 68 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~---~---------------~~~t~~~~~~~~~~~----------~~~~~~ 68 (184)
++..+|+++|+.++|||||+++|+...-.. . ...|+......+.+. ++.+++
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 445689999999999999999998522100 0 011111111122222 678999
Q ss_pred EEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 69 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 69 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
+||||+.+|.......++.+|++++|+|+.+.-.... ...+..+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence 9999999999888889999999999999987544332 333333333 468999999999986
No 292
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.58 E-value=3.2e-13 Score=94.96 Aligned_cols=118 Identities=17% Similarity=0.142 Sum_probs=70.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCC--ccceeEEEEeecCEEEEEEEcCCccchhHh-------HHhhc-
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSE-DMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRTM-------WERYC- 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-------~~~~~- 85 (184)
.+.++|+++|.+|+||||++|++++..... .... +...........+..+.++||||..+.... ...++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 467999999999999999999999766421 1111 222222333456789999999996643221 11112
Q ss_pred -cCCCEEEEEEeCCCCCCHHHH-HHHHHHHhcCCC-CCCCcEEEEEeCCCccc
Q 030000 86 -RGVSAILYVVDAADRDSVPIA-RSELHELLMKPS-LSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 86 -~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~~iivv~nK~D~~~ 135 (184)
...|++++|.+++.. .+... ...+..+...++ .--.+.++++|++|..+
T Consensus 116 ~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred cCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 258999999665432 22222 222222222111 11246899999999764
No 293
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.57 E-value=2e-14 Score=97.41 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=84.9
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCC------------CCC----CccceeEEEEe-----------------
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSE------------DMI----PTVGFNMRKVT----------------- 60 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~------------~~~----~t~~~~~~~~~----------------- 60 (184)
........|+++|+.|||||||+++++...... ... ...+.....+.
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~ 96 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALE 96 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHH
Confidence 344556778999999999999999998431100 000 00000111100
Q ss_pred ---ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 61 ---KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 61 ---~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
..+..+.++++.|.-.... .+....+..+.|+|+.+.+.... .. ......|.++++||+|+.+..
T Consensus 97 ~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~~-------~~~~~~a~iiv~NK~Dl~~~~ 164 (207)
T TIGR00073 97 DLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--KY-------PGMFKEADLIVINKADLAEAV 164 (207)
T ss_pred HhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--hh-------HhHHhhCCEEEEEHHHccccc
Confidence 1134566777766211000 11112344566777764432211 10 111246789999999997532
Q ss_pred --CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 138 --SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 138 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
...+..+.+... ....+++++||++|+|++++++++.++.
T Consensus 165 ~~~~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 165 GFDVEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhhHHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 233333333211 2346799999999999999999998864
No 294
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.57 E-value=4.7e-14 Score=112.65 Aligned_cols=113 Identities=20% Similarity=0.195 Sum_probs=80.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC--C----------------CCCCccceeEEEEee----------------c
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS--E----------------DMIPTVGFNMRKVTK----------------G 62 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--~----------------~~~~t~~~~~~~~~~----------------~ 62 (184)
.+..+|+|+|+.++|||||+++|+...-. . ....|+......+.+ .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 35578999999999999999999843210 0 011122211111222 3
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
++.++++||||+.+|.......++.+|++|+|+|+...-.... ...+..... .++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 6889999999999999999999999999999999986544333 233333333 479999999999987
No 295
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=8.1e-14 Score=100.36 Aligned_cols=113 Identities=23% Similarity=0.329 Sum_probs=82.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc--CC--------------C--------CCCCCCccceeEEEEeecCEEEEEEEcCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT--GG--------------Y--------SEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~--~~--------------~--------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g 73 (184)
+.-..+|+-+|.+|||||-..++- +. . ....+-++..+...+++.++.+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 345678899999999999999981 10 0 01111233344455788999999999999
Q ss_pred ccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 74 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
|++|.......+.-+|.+++|+|+... ++.....+.++. ...++||+=++||.|...
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVc---rlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVC---RLRDIPIFTFINKLDREG 147 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHH---hhcCCceEEEeecccccc
Confidence 999999888888999999999999654 333333333333 336899999999999644
No 296
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.4e-13 Score=96.63 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=98.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC----CC-----CCCCCccceeEEEE---------eecCEEEEEEEcCCccchhH
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGG----YS-----EDMIPTVGFNMRKV---------TKGNVTIKLWDLGGQRRFRT 79 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~----~~-----~~~~~t~~~~~~~~---------~~~~~~~~~~d~~g~~~~~~ 79 (184)
..++++++|+..||||||.+++..-. |. .+.+-|.+.-+..+ ..+..++.++|+||+.....
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 34899999999999999999997321 11 11222333222222 23458899999999988777
Q ss_pred hHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH----HHHHHhC--CCccC-
Q 030000 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLG--LESIT- 152 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~----~~~~~~~--~~~~~- 152 (184)
......+-.|.+++|+|+...-.-+..+..+.--+ --...++|+||+|...+...+ +..+... ++...
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-----~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-----LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhhh-----hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 77666777899999999975433333222211111 123467888999887653332 2222221 12222
Q ss_pred CCceeEEEeeeccC----CCHHHHHHHHHHHh
Q 030000 153 DREVCCYMISCKDS----INIDAVIDWLIKHS 180 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~----~~i~~l~~~i~~~~ 180 (184)
....|++++||+.| ++|.++.+.+.+.+
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 23479999999999 67777777776654
No 297
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.56 E-value=1.2e-13 Score=94.00 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=92.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc----------------------CCCCCCC------CCccceeEEEE----------
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT----------------------GGYSEDM------IPTVGFNMRKV---------- 59 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~----------------------~~~~~~~------~~t~~~~~~~~---------- 59 (184)
+.+.|+|.|+||+|||||++.+.. +.+-.+. ....+.....+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 568999999999999999999971 0000000 00112222222
Q ss_pred ----------eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEe
Q 030000 60 ----------TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 129 (184)
Q Consensus 60 ----------~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~n 129 (184)
+.-++++.+++|.|--+-.... ..-+|.+++|.-+.-.+..+.++.-+.++ .-++|+|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I---~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vVN 175 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVDI---ADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH---HTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH---HHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEEe
Confidence 1235889999998743322222 44599999999998887777666655555 3489999
Q ss_pred CCCcccccC-HHHHHHHhCCCc--cCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 130 KIDKSEALS-KQALVDQLGLES--ITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 130 K~D~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
|+|...... ..++...+.+.. ......+++.+||.+|.||+++++.|.++-.
T Consensus 176 KaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 176 KADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp --SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 999654332 344444443322 2233468999999999999999999988653
No 298
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.1e-13 Score=98.49 Aligned_cols=156 Identities=15% Similarity=0.105 Sum_probs=114.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-----CCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYS-----EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
-|+..|+-..|||||++.+.+.... .+.+.|.+..+.....++..+.++|.||++++-+.....+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4778999999999999999865433 22345666666666677779999999999999998888888999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
|+++.-..+..+ ...++...+ ....++|+||+|..++...++..+.+..... ....+++.+|+++|+||+++.+.
T Consensus 82 ~~deGl~~qtgE--hL~iLdllg--i~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEGLMAQTGE--HLLILDLLG--IKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccCcchhhHH--HHHHHHhcC--CCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 996543333222 222333322 3456999999999876655555554432211 45567899999999999999999
Q ss_pred HHHHhh
Q 030000 176 LIKHSK 181 (184)
Q Consensus 176 i~~~~~ 181 (184)
|.+..+
T Consensus 157 l~~L~~ 162 (447)
T COG3276 157 LIDLLE 162 (447)
T ss_pred HHHhhh
Confidence 998873
No 299
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.54 E-value=9e-14 Score=102.66 Aligned_cols=131 Identities=21% Similarity=0.313 Sum_probs=93.7
Q ss_pred CccceeEEEEee-cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC----------CCHHHHHHHHHHHhcCCC
Q 030000 50 PTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR----------DSVPIARSELHELLMKPS 118 (184)
Q Consensus 50 ~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 118 (184)
+|.|+....+.. .+..+.++|++|+..-+.-|..++.+++++|+|+++++. ..+......+..+.+...
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~ 300 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW 300 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence 466677777777 889999999999999999999999999999999998632 235556677777777766
Q ss_pred CCCCcEEEEEeCCCcccc--------------------cCHHHHHHHhC----CCcc-CC--CceeEEEeeeccCCCHHH
Q 030000 119 LSGIPLLVLGNKIDKSEA--------------------LSKQALVDQLG----LESI-TD--REVCCYMISCKDSINIDA 171 (184)
Q Consensus 119 ~~~~~iivv~nK~D~~~~--------------------~~~~~~~~~~~----~~~~-~~--~~~~~~~~Sa~~~~~i~~ 171 (184)
..+.|+++++||.|+... .+.+...+.+. .... .. +.+.++.++|.+..++..
T Consensus 301 ~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~ 380 (389)
T PF00503_consen 301 FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRK 380 (389)
T ss_dssp GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHH
T ss_pred cccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHH
Confidence 678999999999997542 11122222221 1111 11 556677899999999999
Q ss_pred HHHHHHHHh
Q 030000 172 VIDWLIKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+|+.+.+.+
T Consensus 381 v~~~v~~~i 389 (389)
T PF00503_consen 381 VFNAVKDII 389 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhcCcC
Confidence 999988754
No 300
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=1.5e-13 Score=104.51 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=107.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEe----------------ecCEEEEEEEcCCccchh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMI----PTVGFNMRKVT----------------KGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~----~t~~~~~~~~~----------------~~~~~~~~~d~~g~~~~~ 78 (184)
..-+||+|+..+|||-|+..+.+.+...... ..+|.++.... ..-..+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 4568999999999999999998766544322 23343333322 122447899999999999
Q ss_pred HhHHhhccCCCEEEEEEeCCCC---CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc------cC-----------
Q 030000 79 TMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA------LS----------- 138 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~------~~----------- 138 (184)
.........||.+|+|+|+... +++..+. +++. .+.|+||++||+|.+-. .+
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqtiESi~-----lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-----LLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchhHHHH-----HHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 9988888999999999999753 3333322 2222 58999999999996421 11
Q ss_pred -HHHHHHHhC----------CC---cc----CCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 139 -KQALVDQLG----------LE---SI----TDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 139 -~~~~~~~~~----------~~---~~----~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..++..++. +. .+ ....+.++++||.+|+||.+|+-+|++..+.
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 122222221 11 01 1246789999999999999999999987664
No 301
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.51 E-value=1e-12 Score=93.75 Aligned_cols=108 Identities=13% Similarity=0.005 Sum_probs=66.6
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA 141 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~ 141 (184)
.++++.++||+|..... ......+|.++++.+.. +...+..+...+ .++|.++++||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 36889999999854221 23456678888775543 333333333222 3577899999999976543222
Q ss_pred HHHHh----CC--CccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 142 LVDQL----GL--ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 142 ~~~~~----~~--~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
....+ .. ........+++.+||++|.|++++++++.++..
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 11111 11 001112236899999999999999999988643
No 302
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.49 E-value=6e-13 Score=91.89 Aligned_cols=153 Identities=17% Similarity=0.181 Sum_probs=97.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC-----C------CCCCCCCccc-----------------eeEEE-----------
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG-----G------YSEDMIPTVG-----------------FNMRK----------- 58 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~-----~------~~~~~~~t~~-----------------~~~~~----------- 58 (184)
+...|+|.|.||+|||||+..|... . ..++...|-| .....
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 5578999999999999999999710 0 0011111111 11111
Q ss_pred ---------EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEe
Q 030000 59 ---------VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 129 (184)
Q Consensus 59 ---------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~n 129 (184)
++.-++++.|++|.|--+..-.. ..-+|.+++|.=+.-.+..+.++.-+.++ --++|+|
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~I---~~~aDt~~~v~~pg~GD~~Q~iK~GimEi---------aDi~vIN 197 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEVDI---ANMADTFLVVMIPGAGDDLQGIKAGIMEI---------ADIIVIN 197 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchhHH---hhhcceEEEEecCCCCcHHHHHHhhhhhh---------hheeeEe
Confidence 12235889999998753332222 33389999988887777777776665554 3488999
Q ss_pred CCCccccc-CHHHHHHHhCCCc----cCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 130 KIDKSEAL-SKQALVDQLGLES----ITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 130 K~D~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
|.|....+ ...++...+.... ......+++.+||.+|+|+.++++.|.++.+.
T Consensus 198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 99964432 1233333333321 22345679999999999999999999988653
No 303
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.6e-13 Score=106.32 Aligned_cols=116 Identities=22% Similarity=0.224 Sum_probs=87.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC--------CC------------CCCCCccceeEEEEeecC-EEEEEEEcCCc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGG--------YS------------EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQ 74 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~--------~~------------~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~ 74 (184)
..+..+|+++|+.++|||||..+++... .. ...+-|+.....++.+.. +.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 3456789999999999999999998211 00 112224444555577784 99999999999
Q ss_pred cchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
-+|.......++-+|++++|+|+...-..+.. ..|.+..+ .++|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~----~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADK----YGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhh----cCCCeEEEEECcccccc
Confidence 99999999999999999999999765444333 33333333 58999999999998654
No 304
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.49 E-value=2.6e-13 Score=88.17 Aligned_cols=145 Identities=15% Similarity=0.182 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCC----------------------CCCCccceeEEE-E----------------e
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSE----------------------DMIPTVGFNMRK-V----------------T 60 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~----------------------~~~~t~~~~~~~-~----------------~ 60 (184)
++|.|.|++|||||+|+.+++..-... ...+..+..+.. . .
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 789999999999999999987211000 001111111110 0 0
Q ss_pred ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCcEEEEEeCCCcccccCH
Q 030000 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLM-KPSLSGIPLLVLGNKIDKSEALSK 139 (184)
Q Consensus 61 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~iivv~nK~D~~~~~~~ 139 (184)
.....+.+++.+| .-... .++.-..+.-|+|+|.+..+... .+ ...... .-++|+||.|+.+....
T Consensus 94 ~~~~Dll~iEs~G-NL~~~--~sp~L~d~~~v~VidvteGe~~P---------~K~gP~i~~-aDllVInK~DLa~~v~~ 160 (202)
T COG0378 94 FPDLDLLFIESVG-NLVCP--FSPDLGDHLRVVVIDVTEGEDIP---------RKGGPGIFK-ADLLVINKTDLAPYVGA 160 (202)
T ss_pred CCcCCEEEEecCc-ceecc--cCcchhhceEEEEEECCCCCCCc---------ccCCCceeE-eeEEEEehHHhHHHhCc
Confidence 1114566777777 11111 11111233788999987654332 11 111122 45789999999886544
Q ss_pred --HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 140 --QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 140 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
+.+.+..... +...+++++|+++|+|++++++|+....
T Consensus 161 dlevm~~da~~~---np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 161 DLEVMARDAKEV---NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred cHHHHHHHHHHh---CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 5555544332 3456899999999999999999998754
No 305
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.49 E-value=4.7e-13 Score=93.25 Aligned_cols=160 Identities=16% Similarity=0.228 Sum_probs=105.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeec----CEEEEEEEcCCccchhHhHHhhccCC----CE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG----NVTIKLWDLGGQRRFRTMWERYCRGV----SA 90 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~----~~ 90 (184)
.-+|+|+|+.|+|||||+.++-+.+ ..+.+.-.++.+..+..+ -.++++|-..|...........+... ..
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e-~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE-TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc-ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 4579999999999999999997655 445555555555554432 36688999999877777666655432 36
Q ss_pred EEEEEeCCCC-CCHHHHHHHHHHHhcC-----------------------------------------------------
Q 030000 91 ILYVVDAADR-DSVPIARSELHELLMK----------------------------------------------------- 116 (184)
Q Consensus 91 ~i~v~d~~~~-~~~~~~~~~~~~~~~~----------------------------------------------------- 116 (184)
+|++.|.+++ .-++.+..|...+..+
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 8889999988 3344444444332110
Q ss_pred -------CCCCCCcEEEEEeCCCcccccC-----HHH----HHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 117 -------PSLSGIPLLVLGNKIDKSEALS-----KQA----LVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 117 -------~~~~~~~iivv~nK~D~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
....++|++||+||+|...--+ .++ +...+. .+....+...+++|+++..||+-+.++|.++.
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lR-kFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLR-KFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHH-HHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 0125789999999999843111 111 111111 11223355789999999999999999998764
No 306
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.48 E-value=1.2e-12 Score=92.14 Aligned_cols=123 Identities=17% Similarity=0.224 Sum_probs=70.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------CCccceeEEE--Eee--cCEEEEEEEcCCccch------h
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDM----------IPTVGFNMRK--VTK--GNVTIKLWDLGGQRRF------R 78 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~----------~~t~~~~~~~--~~~--~~~~~~~~d~~g~~~~------~ 78 (184)
.++|+|+|..|+|||||+|.|++....... ..+..+.... +.. ....+.++||||-... .
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999976543332 1122222222 222 2367889999992110 0
Q ss_pred HhHH--------hhc-------------cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 79 TMWE--------RYC-------------RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 79 ~~~~--------~~~-------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
.... .++ .+.|+++|+++++.. .+....-.....+. ..+++|.|+.|+|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence 0111 111 246899999998754 33333333333333 468999999999998876
Q ss_pred CHHHHHHHh
Q 030000 138 SKQALVDQL 146 (184)
Q Consensus 138 ~~~~~~~~~ 146 (184)
+.+.+.+.+
T Consensus 159 el~~~k~~i 167 (281)
T PF00735_consen 159 ELQAFKQRI 167 (281)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665544444
No 307
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.48 E-value=3e-13 Score=94.41 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=42.2
Q ss_pred CCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 121 GIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 121 ~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
..+-++++||+|+.+.. +.+...+.+... ....+++.+|+++|+|++++.+|+.+..
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~l---np~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREV---NPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhh---CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 46679999999997632 344444444321 2456799999999999999999998754
No 308
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.4e-12 Score=89.70 Aligned_cols=161 Identities=18% Similarity=0.161 Sum_probs=105.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc----------------CCCCCCC--CCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT----------------GGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~----------------~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
.+.+++|+.+|+.+.|||||..++.. ++.+++. +-|+...-..++..+..+..+|+||+.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 35789999999999999999988861 0111111 12333333335566778889999999999
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCHHH-----HHHHhCCCcc
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSKQA-----LVDQLGLESI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~~-----~~~~~~~~~~ 151 (184)
-..+..-..+.|+.|+|+.+++....+.-...+.. ..-++| +++++||+|+.+..+..+ ..+.+..-.+
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLla-----rqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLA-----RQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhh-----hhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 98888888889999999999886555443332221 113564 667789999987544322 2233333333
Q ss_pred CCCceeEEEeeeccCC--------CHHHHHHHHHHHhh
Q 030000 152 TDREVCCYMISCKDSI--------NIDAVIDWLIKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~--------~i~~l~~~i~~~~~ 181 (184)
.....|++..||+..- .|.+|.+.+.+.++
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 3456788888886432 25666666666554
No 309
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.46 E-value=1.7e-13 Score=85.44 Aligned_cols=114 Identities=20% Similarity=0.166 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
+||+++|..|+|||+|+.++....+...+. +|.+ +........+.++.++.|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 589999999999999999998777765444 4444 2233344567789999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 99 DRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+..++... |...+... ...+.|.++++||.|+.+.... .+... ..++++|+++|.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~~---~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQV---ATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCcC---CHHHH--------HHHHHHhCCCcchhh
Confidence 88887654 44434332 3356889999999997432211 11111 135678999999875
No 310
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.2e-12 Score=87.75 Aligned_cols=162 Identities=21% Similarity=0.293 Sum_probs=103.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC---CccceeEEEEeecCEEEEEEEcCCccchhH---hHHhhccCCCEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMI---PTVGFNMRKVTKGNVTIKLWDLGGQRRFRT---MWERYCRGVSAIL 92 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~---~~~~~~~~~~~~i 92 (184)
..+|+++|...|||||+.+..+..-.+.+.. +|.......+...-+.+.+||.|||..+.. .....++++.+.+
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 3569999999999999999887554433211 222233333445557899999999886543 3556788999999
Q ss_pred EEEeCCCCCCHHHHHHH-HHHHhcCCCCCCCcEEEEEeCCCcccccCH--------HHHHHHhCCCccCCCceeEEEeee
Q 030000 93 YVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKIDKSEALSK--------QALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+|+|+.+.. .+.+... +.....+.-.+++.+-+++.|+|-...+.. +...+.+...........++.+|.
T Consensus 107 fvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 999996532 2222221 111223444578899999999998764322 122222222233345667888887
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
.+. .|-|.|..+.+.+..
T Consensus 186 yDH-SIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 186 YDH-SIFEAFSKVVQKLIP 203 (347)
T ss_pred cch-HHHHHHHHHHHHHhh
Confidence 654 588888888877643
No 311
>PTZ00258 GTP-binding protein; Provisional
Probab=99.43 E-value=1e-11 Score=90.52 Aligned_cols=82 Identities=21% Similarity=0.336 Sum_probs=58.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeec-----------------CEEEEEEEcCCccc-
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQRR- 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~-----------------~~~~~~~d~~g~~~- 76 (184)
...++|+++|.|++|||||+|++.+...... +..|.......+... ..++.++|+||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 4568999999999999999999987665433 233555555554433 23589999999432
Q ss_pred ------hhHhHHhhccCCCEEEEEEeCC
Q 030000 77 ------FRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 77 ------~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
.....-..++++|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1223334578899999999984
No 312
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=99.41 E-value=1.2e-12 Score=88.64 Aligned_cols=133 Identities=21% Similarity=0.238 Sum_probs=93.9
Q ss_pred ccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC----------CCHHHHHHHHHHHhcCCCCC
Q 030000 51 TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR----------DSVPIARSELHELLMKPSLS 120 (184)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~ 120 (184)
|.|+...++....+.+.++|.+||.+-+.-|...+.+..++|+|+..+.. ..+......+..+++..-..
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 66777778888889999999999999999999999999999999987742 23334444455555554456
Q ss_pred CCcEEEEEeCCCcccccC---HHHHHHHh------------------------------------C-CCccCCCceeEEE
Q 030000 121 GIPLLVLGNKIDKSEALS---KQALVDQL------------------------------------G-LESITDREVCCYM 160 (184)
Q Consensus 121 ~~~iivv~nK~D~~~~~~---~~~~~~~~------------------------------------~-~~~~~~~~~~~~~ 160 (184)
.+.+|+++||.|+....- ...+.+.+ . ...-..+.+...+
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 688999999999865211 01111111 0 0011123455678
Q ss_pred eeeccCCCHHHHHHHHHHHhhhc
Q 030000 161 ISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
++|.+-++|..+|+...+.++.+
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr~ 371 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQRM 371 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHHH
Confidence 99999999999999988887754
No 313
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.41 E-value=5.2e-12 Score=82.93 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=42.2
Q ss_pred EEEEEEcCCccc----hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 030000 65 TIKLWDLGGQRR----FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 65 ~~~~~d~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 131 (184)
.+.++|+||... ....+..+++.+|++++|.+++...+-.....+.. .... ....+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~-~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQ-MLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHH-HHTT---TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHH-HhcC---CCCeEEEEEcCC
Confidence 378999999543 23567778899999999999987555443333333 3333 334489999984
No 314
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.41 E-value=1.1e-12 Score=90.80 Aligned_cols=96 Identities=18% Similarity=0.128 Sum_probs=73.1
Q ss_pred ccchhHhHHhhccCCCEEEEEEeCCCCC-CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH-HHHHHhCCCcc
Q 030000 74 QRRFRTMWERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ-ALVDQLGLESI 151 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~-~~~~~~~~~~~ 151 (184)
.+++..+...+++++|++++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+..... +..+.+.
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~---- 94 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR---- 94 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH----
Confidence 3566667777899999999999999877 89999888875532 579999999999996533221 2222221
Q ss_pred CCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 152 TDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
...++++++||++|+|++++++.+.+
T Consensus 95 -~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 -NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred -HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 23457999999999999999998764
No 315
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=99.34 E-value=2.2e-12 Score=86.02 Aligned_cols=135 Identities=19% Similarity=0.300 Sum_probs=95.5
Q ss_pred CCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC----------CCCCHHHHHHHHHHHhcCC
Q 030000 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA----------DRDSVPIARSELHELLMKP 117 (184)
Q Consensus 48 ~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~ 117 (184)
..||.|+....++..+..+.++|.+|+..-+.-|...+++...+++++..+ +....+.....+..++.+.
T Consensus 183 RvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yP 262 (359)
T KOG0085|consen 183 RVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 262 (359)
T ss_pred ecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccc
Confidence 346777777777788888999999999988888888888776666655443 4556777777778888888
Q ss_pred CCCCCcEEEEEeCCCcccccC------------------HHH----HHHHhC-CCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 118 SLSGIPLLVLGNKIDKSEALS------------------KQA----LVDQLG-LESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 118 ~~~~~~iivv~nK~D~~~~~~------------------~~~----~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
...+-++|+++||.|+.++.- .+. +.+.+. ...-..+...-.+++|.+-+||.-+|.
T Consensus 263 WF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFa 342 (359)
T KOG0085|consen 263 WFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFA 342 (359)
T ss_pred cccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHH
Confidence 878899999999999876321 111 111111 111112334456789999999999999
Q ss_pred HHHHHhhh
Q 030000 175 WLIKHSKT 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
.+.+.+.+
T Consensus 343 aVkDtiLq 350 (359)
T KOG0085|consen 343 AVKDTILQ 350 (359)
T ss_pred HHHHHHHH
Confidence 98887754
No 316
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=8.2e-12 Score=83.13 Aligned_cols=119 Identities=24% Similarity=0.382 Sum_probs=81.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEee-cCEEEEEEEcCCccchhHhHH-----hhccCCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWE-----RYCRGVS 89 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~-----~~~~~~~ 89 (184)
.-||+++|.+|||||++=..++.+-. ..-.+.|+++.-...+. ++..+++||++|++.+..... ..+++.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 45899999999999998777763332 22334566655555543 458899999999996654332 3577899
Q ss_pred EEEEEEeCCCCCCHHHHHHH---HHHHhcCCCCCCCcEEEEEeCCCcccccCH
Q 030000 90 AILYVVDAADRDSVPIARSE---LHELLMKPSLSGIPLLVLGNKIDKSEALSK 139 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~iivv~nK~D~~~~~~~ 139 (184)
++++|+|+...+-...+..+ +..+++ ..+...++...+|.|+......
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~--~SP~AkiF~l~hKmDLv~~d~r 134 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQ--NSPEAKIFCLLHKMDLVQEDAR 134 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHh--cCCcceEEEEEeechhcccchH
Confidence 99999999876544444333 333332 3467888999999999875544
No 317
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.31 E-value=7.9e-11 Score=90.00 Aligned_cols=119 Identities=15% Similarity=0.126 Sum_probs=71.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC-CCCC--CCccceeEEEEeecCEEEEEEEcCCccchh----------HhHHhh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGY-SEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRFR----------TMWERY 84 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~----------~~~~~~ 84 (184)
...+|+++|.+|+||||++|++++... .... ..|...........+..+.++||||..... .....+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 347899999999999999999998753 2221 223333222233457889999999955321 112223
Q ss_pred cc--CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCC-CCcEEEEEeCCCcccc
Q 030000 85 CR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLS-GIPLLVLGNKIDKSEA 136 (184)
Q Consensus 85 ~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~iivv~nK~D~~~~ 136 (184)
+. .+|++++|..+........-...+..+...++.. -...||++|+.|..++
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 33 4799999988753333212222333332222211 1457899999998863
No 318
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.31 E-value=6e-11 Score=84.25 Aligned_cols=124 Identities=19% Similarity=0.345 Sum_probs=78.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------CCCccceeEEE--Eeec--CEEEEEEEcCCccch---hHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSED----------MIPTVGFNMRK--VTKG--NVTIKLWDLGGQRRF---RTM 80 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~----------~~~t~~~~~~~--~~~~--~~~~~~~d~~g~~~~---~~~ 80 (184)
-.++|+++|+.|+|||||+|+|++...... ..+|+.+...+ +... ...++++||||--++ ...
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 469999999999999999999997633222 12333333333 2222 367889999992211 111
Q ss_pred H-----------Hhhc--------------cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 81 W-----------ERYC--------------RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 81 ~-----------~~~~--------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
| ..++ .+.|+++|.+.++.. .+..+.-..+.-+. ..+.+|.|+.|+|...
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~lT 176 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS----KRVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh----cccCeeeeeeccccCC
Confidence 1 1111 136889999998643 44444433333332 4688999999999988
Q ss_pred ccCHHHHHHHh
Q 030000 136 ALSKQALVDQL 146 (184)
Q Consensus 136 ~~~~~~~~~~~ 146 (184)
..+...+.+.+
T Consensus 177 ~~El~~~K~~I 187 (373)
T COG5019 177 DDELAEFKERI 187 (373)
T ss_pred HHHHHHHHHHH
Confidence 77765555554
No 319
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.28 E-value=5.4e-10 Score=81.24 Aligned_cols=151 Identities=16% Similarity=0.181 Sum_probs=84.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC----CCC--------------CCCC---CccceeE---EEEe-----ecCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG----GYS--------------EDMI---PTVGFNM---RKVT-----KGNVTIKL 68 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~----~~~--------------~~~~---~t~~~~~---~~~~-----~~~~~~~~ 68 (184)
..+-|+|+|+.++|||||+|+|.+. +.. ...+ .|....+ ..++ .....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4688999999999999999999966 222 1122 2333333 2222 33478999
Q ss_pred EEcCCcc--------chhH-----------h----------HHhhcc-CCCEEEEEE-eCC----CCCCHHHH-HHHHHH
Q 030000 69 WDLGGQR--------RFRT-----------M----------WERYCR-GVSAILYVV-DAA----DRDSVPIA-RSELHE 112 (184)
Q Consensus 69 ~d~~g~~--------~~~~-----------~----------~~~~~~-~~~~~i~v~-d~~----~~~~~~~~-~~~~~~ 112 (184)
+||+|-. +... . ....+. .++..++|. |.+ .++.+... ..+...
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 9999911 1111 0 223344 788888887 764 11223333 333333
Q ss_pred HhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee--ccCCCHHHHHHHHH
Q 030000 113 LLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC--KDSINIDAVIDWLI 177 (184)
Q Consensus 113 ~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~l~~~i~ 177 (184)
+ +. .++|+++++||+|-...+. .+..+.+.. .+ ..+++.+|+ .+.+.|..+++.+.
T Consensus 176 L-k~---~~kPfiivlN~~dp~~~et-~~l~~~l~e-ky---~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 176 L-KE---LNKPFIILLNSTHPYHPET-EALRQELEE-KY---DVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred H-Hh---cCCCEEEEEECcCCCCchh-HHHHHHHHH-Hh---CCceEEEEHHHcCHHHHHHHHHHHH
Confidence 3 33 5899999999999433222 222222211 01 124555554 44556666666554
No 320
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.28 E-value=7.1e-11 Score=88.24 Aligned_cols=160 Identities=18% Similarity=0.247 Sum_probs=98.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe--ec----CEEEEEEEcCCccchhHhHHhhccCC---
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT--KG----NVTIKLWDLGGQRRFRTMWERYCRGV--- 88 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~--~~----~~~~~~~d~~g~~~~~~~~~~~~~~~--- 88 (184)
..-.|+|+|..++|||||+.+|.+.+ .+.++.+..|.-++ .. ...+.+|...|...+..+....+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34689999999999999999986543 23344454444333 22 25689999988777777666655432
Q ss_pred -CEEEEEEeCCCCCCHHHH-HHHHHHH------------------------h-cC------C------------------
Q 030000 89 -SAILYVVDAADRDSVPIA-RSELHEL------------------------L-MK------P------------------ 117 (184)
Q Consensus 89 -~~~i~v~d~~~~~~~~~~-~~~~~~~------------------------~-~~------~------------------ 117 (184)
-.+|+|+|.+.|..+... ..|+..+ + .+ .
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 368899999975544311 1111110 0 00 0
Q ss_pred ------------CCCCCcEEEEEeCCCcccccCH---------HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 118 ------------SLSGIPLLVLGNKIDKSEALSK---------QALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 118 ------------~~~~~~iivv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
..-++|++||++|+|....-+. +-+...+. ......+..++++|++...+++-++.+|
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR-~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLR-TFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHH-HHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 0124899999999997542111 11111111 1122345678889999999999999998
Q ss_pred HHHhh
Q 030000 177 IKHSK 181 (184)
Q Consensus 177 ~~~~~ 181 (184)
.+.+.
T Consensus 260 ~h~l~ 264 (472)
T PF05783_consen 260 LHRLY 264 (472)
T ss_pred HHHhc
Confidence 88764
No 321
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.1e-10 Score=83.47 Aligned_cols=123 Identities=17% Similarity=0.300 Sum_probs=77.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCCccceeEEEE--eec--CEEEEEEEcCCccc---------
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSED---------MIPTVGFNMRKV--TKG--NVTIKLWDLGGQRR--------- 76 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~---------~~~t~~~~~~~~--~~~--~~~~~~~d~~g~~~--------- 76 (184)
.|+++++|+.|.|||||+|+|+...+... ...|..+..... +.. ...++++||||-.+
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 59999999999999999999997644332 112333333332 222 36688999999221
Q ss_pred -----hhHhHHhh-----------cc--CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC
Q 030000 77 -----FRTMWERY-----------CR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 77 -----~~~~~~~~-----------~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 138 (184)
..+....| +. +.|+++|.+.++.. .+..+.-.++.-+. ..+++|.|+.|+|.....+
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCHHH
Confidence 11111222 22 46889999998743 34444433333332 4788999999999988766
Q ss_pred HHHHHHHh
Q 030000 139 KQALVDQL 146 (184)
Q Consensus 139 ~~~~~~~~ 146 (184)
...+.+..
T Consensus 176 l~~~K~~I 183 (366)
T KOG2655|consen 176 LNQFKKRI 183 (366)
T ss_pred HHHHHHHH
Confidence 65544444
No 322
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.26 E-value=2e-09 Score=73.97 Aligned_cols=70 Identities=19% Similarity=0.138 Sum_probs=43.7
Q ss_pred EEEEEEEcCCccc-------------hhHhHHhhccC-CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEe
Q 030000 64 VTIKLWDLGGQRR-------------FRTMWERYCRG-VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 129 (184)
Q Consensus 64 ~~~~~~d~~g~~~-------------~~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~n 129 (184)
..+.++|+||-.. ...+...++++ .+.+++|+|+...-.-....... ..+ ...+.|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia-~~l---d~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLA-KEV---DPQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHH-HHH---HHcCCcEEEEEE
Confidence 5688999999532 12345556774 45889999886432222211222 222 235789999999
Q ss_pred CCCccccc
Q 030000 130 KIDKSEAL 137 (184)
Q Consensus 130 K~D~~~~~ 137 (184)
|.|..+..
T Consensus 201 K~D~~~~~ 208 (240)
T smart00053 201 KLDLMDEG 208 (240)
T ss_pred CCCCCCcc
Confidence 99997643
No 323
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=3.4e-11 Score=91.15 Aligned_cols=112 Identities=19% Similarity=0.265 Sum_probs=81.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCc---------------cceeE---------EEEeecCEEEEEEEcCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPT---------------VGFNM---------RKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t---------------~~~~~---------~~~~~~~~~~~~~d~~g 73 (184)
...+|+++|+-++|||+|+..|..+..+.....+ .|... ...+.+.+-+++.||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 3467899999999999999999854432221110 01111 11234558899999999
Q ss_pred ccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 74 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
+-.|.......++.+|++++++|+.+.-.+.. ...+...+ ..+.|+.+|+||.|..
T Consensus 207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai----q~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI----QNRLPIVVVINKVDRL 262 (971)
T ss_pred cccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH----hccCcEEEEEehhHHH
Confidence 99999999999999999999999987755543 33333333 3589999999999964
No 324
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.24 E-value=4e-11 Score=85.56 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=100.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc----------------ceeEEE--E-------------------
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV----------------GFNMRK--V------------------- 59 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~----------------~~~~~~--~------------------- 59 (184)
+.++.|++.|+.+.|||||...|.-++.....+.|. ...+.. +
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 467899999999999999999998655444333222 122211 1
Q ss_pred --eecCEEEEEEEcCCccchhHhHHhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 60 --TKGNVTIKLWDLGGQRRFRTMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 60 --~~~~~~~~~~d~~g~~~~~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+..+.-+.++|+.|++.|.+....- -++.|-.++++.+++.-+...- +.+.-. ...+.|+++++||+|+.+
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk-EHLgi~----~a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK-EHLGIA----LAMELPVIVVVTKIDMVP 269 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh-Hhhhhh----hhhcCCEEEEEEecccCc
Confidence 1123558899999999988765543 3568999999999876444322 222212 225799999999999987
Q ss_pred ccCHHHHHHH----hCC--------------------CccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 136 ALSKQALVDQ----LGL--------------------ESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 136 ~~~~~~~~~~----~~~--------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
.+..+...+. +.. ......-.|+|.+|+.+|+|.+-+.+.+
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 6544332222 211 0011125799999999999987555444
No 325
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.22 E-value=5.6e-10 Score=75.06 Aligned_cols=138 Identities=18% Similarity=0.284 Sum_probs=80.7
Q ss_pred HHHHHHHhhhhccc--eeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------CCCccceeEE--EEeecC--EEEEEE
Q 030000 5 DSILNWLRSLFFKQ--EMELSLIGLQNAGKTSLVNTIATGGYSED---------MIPTVGFNMR--KVTKGN--VTIKLW 69 (184)
Q Consensus 5 ~~~~~~~~~~~~~~--~~~i~v~G~~~~GKstli~~~~~~~~~~~---------~~~t~~~~~~--~~~~~~--~~~~~~ 69 (184)
+++.+.++.-.++. .|+|+|+|.+|.|||||+|+++......+ ...|..+... .++.++ .+++++
T Consensus 30 dtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltvi 109 (336)
T KOG1547|consen 30 DTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVI 109 (336)
T ss_pred HHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEe
Confidence 34445555544443 68999999999999999999985443221 1123332221 133333 567899
Q ss_pred EcCCccc---hhHhHH-----------h------------hcc--CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCC
Q 030000 70 DLGGQRR---FRTMWE-----------R------------YCR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSG 121 (184)
Q Consensus 70 d~~g~~~---~~~~~~-----------~------------~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (184)
||||--+ ...+|. . .+. ..++++|.+.++.. ++..+.-.+..-+. .-
T Consensus 110 DTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt----~v 184 (336)
T KOG1547|consen 110 DTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLT----EV 184 (336)
T ss_pred cCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHh----hh
Confidence 9999111 111111 1 122 35778888888743 34334333322222 24
Q ss_pred CcEEEEEeCCCcccccCHHHHHHHhC
Q 030000 122 IPLLVLGNKIDKSEALSKQALVDQLG 147 (184)
Q Consensus 122 ~~iivv~nK~D~~~~~~~~~~~~~~~ 147 (184)
+.++.|+.|+|...-++...+.+++.
T Consensus 185 vNvvPVIakaDtlTleEr~~FkqrI~ 210 (336)
T KOG1547|consen 185 VNVVPVIAKADTLTLEERSAFKQRIR 210 (336)
T ss_pred heeeeeEeecccccHHHHHHHHHHHH
Confidence 67888999999887776666665554
No 326
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2.4e-10 Score=80.43 Aligned_cols=162 Identities=16% Similarity=0.104 Sum_probs=103.4
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhc----------------CCCCCCCCCccceeEEEE--eecCEEEEEEEcCCccc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIAT----------------GGYSEDMIPTVGFNMRKV--TKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~----------------~~~~~~~~~t~~~~~~~~--~~~~~~~~~~d~~g~~~ 76 (184)
..+.+.+|.-+|+...|||||--++.. ++.+++...-+.++...+ +.....+.=.|+||+.+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 345689999999999999999888871 111112222233333333 34445567789999999
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-----HHHHHHhCCCcc
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESI 151 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~~~~ 151 (184)
|-..+..-..+.|+.|+|+.++|....+.-...+. . ++.. -..+++++||.|+.+..+. -++.+.+....+
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLL-A-rQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLL-A-RQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHH-H-HHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 99888888889999999999999765554333222 1 2222 2456777899999854332 223344444455
Q ss_pred CCCceeEEEeeec---cCCC-------HHHHHHHHHHHh
Q 030000 152 TDREVCCYMISCK---DSIN-------IDAVIDWLIKHS 180 (184)
Q Consensus 152 ~~~~~~~~~~Sa~---~~~~-------i~~l~~~i~~~~ 180 (184)
.....|++.-||+ .|.+ |.++++.+-+.+
T Consensus 206 ~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 206 DGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred CCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 6677889887764 4432 455555554433
No 327
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.21 E-value=8.8e-10 Score=82.48 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=102.3
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----EEeecCEEEEEEEcCCccchhHhHHhhccCCC
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVS 89 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 89 (184)
...++-+...|+|+.++|||.+++.++++.+...+..+....+. ........+.+.|.+-.. ....... -..||
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~-~~~l~~k-e~~cD 497 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDD-QDFLTSK-EAACD 497 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCccc-cccccCc-cceee
Confidence 34456788999999999999999999998877655444443222 233444555666655431 1111111 15699
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-----CHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++.++||.+++.++............. .+.|+++|++|+|+.+.. ...++...+++.. |+. .|.+
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~------P~~-~S~~ 567 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP------PIH-ISSK 567 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC------Cee-eccC
Confidence 999999999999998887766654333 789999999999996532 2366777666542 233 3444
Q ss_pred -cCCCHHHHHHHHHHHhh
Q 030000 165 -DSINIDAVIDWLIKHSK 181 (184)
Q Consensus 165 -~~~~i~~l~~~i~~~~~ 181 (184)
.+. .++|..|..+..
T Consensus 568 ~~~s--~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 568 TLSS--NELFIKLATMAQ 583 (625)
T ss_pred CCCC--chHHHHHHHhhh
Confidence 333 688888877654
No 328
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=5e-10 Score=85.14 Aligned_cols=146 Identities=17% Similarity=0.323 Sum_probs=86.7
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccce---------------------------------------
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGF--------------------------------------- 54 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~--------------------------------------- 54 (184)
..+.+.||++.|..++||||++|+++..+.-+ ..+++...
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 45678999999999999999999999443211 11111110
Q ss_pred -----eEEEEeec-------CEEEEEEEcCCcc---chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCC
Q 030000 55 -----NMRKVTKG-------NVTIKLWDLGGQR---RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSL 119 (184)
Q Consensus 55 -----~~~~~~~~-------~~~~~~~d~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 119 (184)
....+-+. .-.+.++|.||.. ...+....+..++|++|+|.++.+. +......+.... ..
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--lt~sek~Ff~~v---s~ 259 (749)
T KOG0448|consen 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--LTLSEKQFFHKV---SE 259 (749)
T ss_pred ccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--hHHHHHHHHHHh---hc
Confidence 00001011 0257899999943 5566777788999999999998653 333333333332 22
Q ss_pred CCCcEEEEEeCCCcccccCH--HHH---HHHhCCCccCCCceeEEEeeecc
Q 030000 120 SGIPLLVLGNKIDKSEALSK--QAL---VDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 120 ~~~~iivv~nK~D~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+..++++.||+|....++. +.+ ...+.........-.+|++|++.
T Consensus 260 ~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 260 EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 35667777899998765321 222 22233222222333588899654
No 329
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.18 E-value=4.2e-11 Score=88.81 Aligned_cols=159 Identities=23% Similarity=0.375 Sum_probs=115.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.++|++|+|..++|||+|+.+++-+.+.+...+-.+..... +......+.+.|.+|... ..+....|++|+|+
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf 103 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVF 103 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEE
Confidence 57999999999999999999999998887777666644433 345566777888887432 44567799999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
...+..+++.+......+-.+.....+|.++++++.-.............-.........+.+|++++.+|.+++..|+.
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~ 183 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQE 183 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHH
Confidence 99999999999888887766666677888888887644322111000000001112234457999999999999999999
Q ss_pred HHHHhh
Q 030000 176 LIKHSK 181 (184)
Q Consensus 176 i~~~~~ 181 (184)
+...+.
T Consensus 184 ~~~k~i 189 (749)
T KOG0705|consen 184 VAQKIV 189 (749)
T ss_pred HHHHHH
Confidence 887664
No 330
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.17 E-value=1.3e-09 Score=81.41 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=75.4
Q ss_pred EEEEEEEcCC-------------ccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 030000 64 VTIKLWDLGG-------------QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNK 130 (184)
Q Consensus 64 ~~~~~~d~~g-------------~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK 130 (184)
....++|.|| .+...++...++++.+++|+|+.-. +.+........++......+...|+|+||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 4578999999 3346678888999999999999743 44555555666777788889999999999
Q ss_pred CCcccc--cCHHHHHHHhCC---CccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 131 IDKSEA--LSKQALVDQLGL---ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 131 ~D~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
+|+.+. .++..+.+.+.- .......+.++..-..+.+.|+++-++-.+...
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGnssdSIdaIR~YEE~FF~ 544 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIREYEEEFFQ 544 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCcchhHHHHHHHHHHHhh
Confidence 999875 344555555532 111122222333333445567777666555443
No 331
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.17 E-value=3.1e-10 Score=82.08 Aligned_cols=79 Identities=27% Similarity=0.389 Sum_probs=55.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecC-----------------EEEEEEEcCCccc----
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRR---- 76 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~---- 76 (184)
++|+++|.|++|||||+|++.+...... +..|.......+...+ .++.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999998774322 2345555544443332 3589999999432
Q ss_pred ---hhHhHHhhccCCCEEEEEEeCC
Q 030000 77 ---FRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 77 ---~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
.....-..++++|+++.|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1122334578899999999984
No 332
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.16 E-value=2.6e-10 Score=79.83 Aligned_cols=77 Identities=27% Similarity=0.382 Sum_probs=54.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecC-----------------EEEEEEEcCCccc------
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRR------ 76 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~------ 76 (184)
|+++|.|++|||||+|++.+.+.... +..|.......+...+ ..+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999998776433 3345555555444333 2589999999432
Q ss_pred -hhHhHHhhccCCCEEEEEEeCC
Q 030000 77 -FRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 77 -~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
.....-..++++|+++.|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1223334577899999999974
No 333
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.16 E-value=2.8e-10 Score=76.20 Aligned_cols=99 Identities=19% Similarity=0.193 Sum_probs=64.4
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH-HHHHh---CCCcc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA-LVDQL---GLESI 151 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~-~~~~~---~~~~~ 151 (184)
.+...+..+++++|++++|+|+.++..... ..+... ..+.|+++|+||+|+.+...... ..... .....
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~~~-----~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPGSLI-----PRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCCccc-----hhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence 357788889999999999999987542111 111111 24689999999999975433221 11111 10111
Q ss_pred CCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 152 TDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
......++.+||++|+|++++++++.+.++
T Consensus 96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 111235899999999999999999988764
No 334
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.15 E-value=3.5e-10 Score=73.37 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=62.1
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCcee
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVC 157 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
+......++++|++++|+|+.++..... ..+...... .+.|+++|+||+|+.+....+....... ....+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~-----~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIKE-----SEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHHH-----hCCCc
Confidence 4456667778999999999977543222 112222221 3689999999999864322222211111 12246
Q ss_pred EEEeeeccCCCHHHHHHHHHHHhh
Q 030000 158 CYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 158 ~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
++.+||++|.|++++++.+.+.++
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHh
Confidence 899999999999999999988764
No 335
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=7.4e-10 Score=85.10 Aligned_cols=111 Identities=21% Similarity=0.251 Sum_probs=78.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC--------------CCCCCccceeEEE----EeecCEEEEEEEcCCccchh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS--------------EDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~--------------~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~ 78 (184)
+..-+|+++.+...|||||+..+...+-. .....+.|++... ...+++.++++|+|||-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 34567899999999999999999843211 1111233333322 33578999999999999999
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCC
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 132 (184)
+......+-+|++++++|+...---+...-....+. .+...++|+||+|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~-----~~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI-----EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH-----ccCceEEEEehhh
Confidence 999999999999999999975433333222222232 4677888999999
No 336
>PRK12289 GTPase RsgA; Reviewed
Probab=99.11 E-value=3.8e-10 Score=81.79 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=64.8
Q ss_pred hHHhhccCCCEEEEEEeCCCCC-CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeE
Q 030000 80 MWERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCC 158 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
+....+.++|.+++|+|+.++. ....+..++.... ..++|+++|+||+|+.+....+.+.+.+. ..++++
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~~-----~~g~~v 152 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRLQ-----QWGYQP 152 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHHH-----hcCCeE
Confidence 3344588999999999998765 4445566665442 25799999999999975433333433332 123468
Q ss_pred EEeeeccCCCHHHHHHHHHHH
Q 030000 159 YMISCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 159 ~~~Sa~~~~~i~~l~~~i~~~ 179 (184)
+.+||++|.|++++++.+...
T Consensus 153 ~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 153 LFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEEcCCCCCHHHHhhhhccc
Confidence 999999999999999988653
No 337
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.10 E-value=9.5e-10 Score=77.01 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=92.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEee-cCEEEEEEEcCCcc---------chhHhHHhh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTK-GNVTIKLWDLGGQR---------RFRTMWERY 84 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~-~~~~~~~~d~~g~~---------~~~~~~~~~ 84 (184)
....-|.|+|-.+||||||++.+......+.. -.|.+.......- .+..+.+.||.|-- .|..... .
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLe-e 254 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLE-E 254 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHH-H
Confidence 34577899999999999999999854443221 2344443333222 23456778999822 1222222 2
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc----EEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEE
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP----LLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
...+|.++=|.|++.|.........+. .++...-+..| ++=|=||+|..+..... + ....+.
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~-vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~--------E-----~n~~v~ 320 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLH-VLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE--------E-----KNLDVG 320 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHH-HHHhcCCCcHHHHhHHHhhccccccccccCcc--------c-----cCCccc
Confidence 456899999999999876665554444 44444433333 33445666653322110 0 111577
Q ss_pred eeeccCCCHHHHHHHHHHHhh
Q 030000 161 ISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
+|+++|+|.+++.+.+-..+.
T Consensus 321 isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cccccCccHHHHHHHHHHHhh
Confidence 999999999999998876654
No 338
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.10 E-value=7.3e-10 Score=71.95 Aligned_cols=53 Identities=26% Similarity=0.362 Sum_probs=35.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC-C--CCCccceeEEEEeecCEEEEEEEcCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSE-D--MIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g 73 (184)
+.++|+++|.+|+|||||+|++.+..... . .+.|..... +.. ...+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITL-MKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--EEc-CCCEEEEECcC
Confidence 56889999999999999999998754321 1 112222221 221 22478999998
No 339
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=6.9e-10 Score=79.22 Aligned_cols=153 Identities=20% Similarity=0.280 Sum_probs=96.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC-----------------------ccceeEEE--------------Eee
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIP-----------------------TVGFNMRK--------------VTK 61 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~-----------------------t~~~~~~~--------------~~~ 61 (184)
+.+++|+|...+|||||+..+..+......+. +.|++... .+.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 68999999999999999998885543322111 11211110 112
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccC--CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRG--VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~ 139 (184)
...-+.++|.+|+.+|.......+.. .|...+|+.++....... ++.+.-+.. -++|++++++|.|+......
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchhH
Confidence 23558899999999988765554443 477788888865443322 222222222 48999999999999887554
Q ss_pred HHHHHHhCC----C---------------------ccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 140 QALVDQLGL----E---------------------SITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 140 ~~~~~~~~~----~---------------------~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
+...+.+.. . .....-.|+|.+|+.+|+|.+-+-..+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 443333321 0 111245789999999999987665544
No 340
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.3e-10 Score=79.52 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=77.0
Q ss_pred EEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHH
Q 030000 65 TIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVD 144 (184)
Q Consensus 65 ~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~ 144 (184)
-+.++|+||++-....+-.-..-.|++++++..+.........+.+..+--. .-..++++-||+|+..+....+..+
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKiDli~e~~A~eq~e 202 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDLIKESQALEQHE 202 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechhhhhhHHHHHHHHH
Confidence 3779999999877666555555568888888887655544444443333111 1245788899999987654433333
Q ss_pred HhC-C-CccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 145 QLG-L-ESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 145 ~~~-~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.+. + ........|++++||.-++||+-+.++|.+.++
T Consensus 203 ~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 203 QIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 222 1 122234668999999999999999999998875
No 341
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.06 E-value=1.1e-09 Score=71.88 Aligned_cols=53 Identities=25% Similarity=0.372 Sum_probs=36.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--CCccceeEEEEeecCEEEEEEEcCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS-EDM--IPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~--~~t~~~~~~~~~~~~~~~~~~d~~g 73 (184)
..++++++|.+|+|||||+|++.+.... ... +.|..... +.. +..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~--~~~-~~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQE--VHL-DKKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEE--EEe-CCCEEEEECcC
Confidence 4589999999999999999999975542 222 22332222 222 23588999998
No 342
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.06 E-value=6.6e-10 Score=79.45 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=92.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC------------------CCCccceeEEEE---------------------
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSED------------------MIPTVGFNMRKV--------------------- 59 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~------------------~~~t~~~~~~~~--------------------- 59 (184)
+.+|.|+|+..+|||||+..+..+..... ..+..|-+..-+
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 68999999999999999988874332211 112222211111
Q ss_pred --eecCEEEEEEEcCCccchhHhHHhhcc--CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 60 --TKGNVTIKLWDLGGQRRFRTMWERYCR--GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 60 --~~~~~~~~~~d~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+.....++++|.+|+++|......-+. -.|...+++-++-. -+--..+.+.-. ..-.+|+++|+||+|+++
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLA----LaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLA----LALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhh----hhhcCcEEEEEEeeccCc
Confidence 122355889999999998775544332 35666777765422 111111111111 224799999999999988
Q ss_pred ccCHHHHHHHh----CCC---------------------ccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 136 ALSKQALVDQL----GLE---------------------SITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 136 ~~~~~~~~~~~----~~~---------------------~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
..-.++-.+.+ ... +...+-+|+|.+|..+|+|.+-+..++
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 65554433332 111 112346789999999999987655443
No 343
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=9.3e-09 Score=73.44 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=77.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---CCCccceeEEEEeec--------------------------------
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSED---MIPTVGFNMRKVTKG-------------------------------- 62 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~---~~~t~~~~~~~~~~~-------------------------------- 62 (184)
...-|+++|.-..||||+++.++.++++.. ..||.......+.+.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 567899999999999999999998877632 224444222221110
Q ss_pred ---------CEEEEEEEcCCccc-----------hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCC
Q 030000 63 ---------NVTIKLWDLGGQRR-----------FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI 122 (184)
Q Consensus 63 ---------~~~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (184)
--.++++||||.-. |.....=+..++|.++++||+..-+--+.....+..+ ....-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL----kG~Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL----KGHED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh----hCCcc
Confidence 02388999999322 2334444577899999999997655444455544444 23455
Q ss_pred cEEEEEeCCCcccccCH
Q 030000 123 PLLVLGNKIDKSEALSK 139 (184)
Q Consensus 123 ~iivv~nK~D~~~~~~~ 139 (184)
.+-||+||+|..+.+..
T Consensus 213 kiRVVLNKADqVdtqqL 229 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQQL 229 (532)
T ss_pred eeEEEeccccccCHHHH
Confidence 67788999998665443
No 344
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=6.5e-10 Score=83.54 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=81.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC--------------------CCCCCCCccceeEEEEeecCEEEEEEEcCCcc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGG--------------------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 75 (184)
.++.-+|.+.-+-.+||||+-++++.-. .....+-|.......+.+.++.++++||||+-
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV 115 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence 3456779999999999999999998210 00111123333334466789999999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
+|--..+..++-.|+.|+++|+-..-. ......+.+..+ .++|.+-++||.|..
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~r----y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKR----YNVPRICFINKMDRM 169 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHh----cCCCeEEEEehhhhc
Confidence 999999999999999999999854322 222333333333 489999999999953
No 345
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=1.7e-09 Score=74.36 Aligned_cols=124 Identities=14% Similarity=0.213 Sum_probs=81.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC----ccceeEEEEe--ec--CEEEEEEEcCCc-------cch-----
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP----TVGFNMRKVT--KG--NVTIKLWDLGGQ-------RRF----- 77 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~----t~~~~~~~~~--~~--~~~~~~~d~~g~-------~~~----- 77 (184)
-.|+|+-+|..|.|||||+.++++..+...+.+ ++.....+++ .. ..++.++||.|- +.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 479999999999999999999999888655443 3333333332 22 366889999981 111
Q ss_pred --hHhHHhh-------------c--cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH
Q 030000 78 --RTMWERY-------------C--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140 (184)
Q Consensus 78 --~~~~~~~-------------~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~ 140 (184)
......| + ...++++|.+.++.. ++..+......-+. .++.+|.++.|+|.....+..
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK~eL~ 195 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLD----SKVNIIPVIAKADTISKEELK 195 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHh----hhhhhHHHHHHhhhhhHHHHH
Confidence 1112222 2 245778888888744 66666655554444 478889999999988776665
Q ss_pred HHHHHh
Q 030000 141 ALVDQL 146 (184)
Q Consensus 141 ~~~~~~ 146 (184)
.+...+
T Consensus 196 ~FK~ki 201 (406)
T KOG3859|consen 196 RFKIKI 201 (406)
T ss_pred HHHHHH
Confidence 554444
No 346
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.00 E-value=1.3e-08 Score=69.13 Aligned_cols=85 Identities=22% Similarity=0.286 Sum_probs=59.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecCEEEEEEEcCCccchhH-------hHHhhccCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT-------MWERYCRGV 88 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~~ 88 (184)
...+|+++|-|.+|||||+..+........ ...|.......+...+..+++.|.||.-+..+ ......+-+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 368999999999999999999975433221 11344444455778888999999999443222 233345678
Q ss_pred CEEEEEEeCCCCCC
Q 030000 89 SAILYVVDAADRDS 102 (184)
Q Consensus 89 ~~~i~v~d~~~~~~ 102 (184)
|.+++|.|++..+.
T Consensus 141 DlilMvLDatk~e~ 154 (364)
T KOG1486|consen 141 DLILMVLDATKSED 154 (364)
T ss_pred cEEEEEecCCcchh
Confidence 99999999986443
No 347
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.00 E-value=3e-09 Score=75.57 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=63.9
Q ss_pred HhhccCCCEEEEEEeCCCCC-CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEE
Q 030000 82 ERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+..+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+........... .....+++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEA-----LALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHH-----HhCCCeEEE
Confidence 34478899999999999887 77777777765543 478999999999996542211111111 112357999
Q ss_pred eeeccCCCHHHHHHHHHH
Q 030000 161 ISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~ 178 (184)
+||+++.|+++++.++..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999988764
No 348
>PRK12288 GTPase RsgA; Reviewed
Probab=98.99 E-value=3.7e-09 Score=76.70 Aligned_cols=89 Identities=19% Similarity=0.173 Sum_probs=65.0
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
..++|.+++|++.....++..+..|+.... ..++|.++|+||+|+.+........+.... +....++++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCC
Confidence 467899999999998889999988877543 247899999999999764332222221111 11223579999999
Q ss_pred cCCCHHHHHHHHHHH
Q 030000 165 DSINIDAVIDWLIKH 179 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~ 179 (184)
+++|++++++++...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999998754
No 349
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.96 E-value=3e-09 Score=71.23 Aligned_cols=53 Identities=25% Similarity=0.390 Sum_probs=34.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---------CCC--CCccceeEEEEeecCEEEEEEEcCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---------EDM--IPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---------~~~--~~t~~~~~~~~~~~~~~~~~~d~~g 73 (184)
+..+++++|.+|+|||||+|++++.... ... +.|..... +.... .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIK--IPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEE--EecCC-CCEEEeCcC
Confidence 4578999999999999999999974421 111 12222222 22221 478999999
No 350
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.95 E-value=3.2e-09 Score=67.70 Aligned_cols=54 Identities=26% Similarity=0.342 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEeecCEEEEEEEcCCc
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSED-MIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~d~~g~ 74 (184)
.+++++|.+|+|||||+|++++...... ..+..+.....+.... .+.+|||||.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 3899999999999999999997765321 1111122222233222 5799999995
No 351
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=5e-10 Score=81.02 Aligned_cols=126 Identities=23% Similarity=0.224 Sum_probs=92.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc--------CCC------------CCCCCCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT--------GGY------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~--------~~~------------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
+--+|+++.+..+||||...+++. +.. ..+.+-|+......++++++.++++||||+-+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 456799999999999999999982 111 112223444444557899999999999999999
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc---CHHHHHHHhCC
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---SKQALVDQLGL 148 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~---~~~~~~~~~~~ 148 (184)
.-.....++-.|+++.|+|++-.-..+.+. ++++....++|-+.++||+|..... ..+.+.+.++.
T Consensus 116 ~leverclrvldgavav~dasagve~qtlt-----vwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLT-----VWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceee-----eehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 999999999999999999997543333333 3344555789999999999986532 34556666654
No 352
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.93 E-value=1.1e-08 Score=66.38 Aligned_cols=90 Identities=20% Similarity=0.187 Sum_probs=59.7
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
.++++|.+++|+|+.++... ....+...+... ..++|+++|+||+|+.+..........+... ....++.+||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEeec
Confidence 47789999999999876322 122223333221 2458999999999997554333444444321 1223578999
Q ss_pred ccCCCHHHHHHHHHHHh
Q 030000 164 KDSINIDAVIDWLIKHS 180 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~ 180 (184)
+.+.|++++.+.+.+..
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999998764
No 353
>PRK00098 GTPase RsgA; Reviewed
Probab=98.93 E-value=5.5e-09 Score=74.66 Aligned_cols=86 Identities=20% Similarity=0.154 Sum_probs=59.3
Q ss_pred hccCCCEEEEEEeCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEe
Q 030000 84 YCRGVSAILYVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMI 161 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
...++|.+++|+|+.++...... ..|+.... . .++|+++|+||+|+.+.. ...+..+.+. ...++++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~-~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-----~~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAE-A---NGIKPIIVLNKIDLLDDLEEARELLALYR-----AIGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEEhHHcCCCHHHHHHHHHHHH-----HCCCeEEEE
Confidence 35889999999999887665544 55544432 2 478999999999996321 1122222221 123479999
Q ss_pred eeccCCCHHHHHHHHHH
Q 030000 162 SCKDSINIDAVIDWLIK 178 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~ 178 (184)
||++|.|++++++.+..
T Consensus 148 SA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 148 SAKEGEGLDELKPLLAG 164 (298)
T ss_pred eCCCCccHHHHHhhccC
Confidence 99999999999988753
No 354
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.1e-09 Score=78.69 Aligned_cols=159 Identities=17% Similarity=0.142 Sum_probs=100.2
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcC---------------------------------CCCCCCCCccceeEEEEee
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATG---------------------------------GYSEDMIPTVGFNMRKVTK 61 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~---------------------------------~~~~~~~~t~~~~~~~~~~ 61 (184)
+.+.+.+++++|+..+||||+-..++.. .-....+.|.+.-...++.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 4467899999999999999998888710 0112223455555555667
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC---CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR---DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 138 (184)
....+++.|+||+..|...+..-..++|..++|+.+-.. ..|+.-..-..+........-...++++||.|-....-
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 778899999999999998888888899999999987321 11211111111111111123456788899999765221
Q ss_pred ----HHHHHHH----hC-CCccCCCceeEEEeeeccCCCHHHHH
Q 030000 139 ----KQALVDQ----LG-LESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 139 ----~~~~~~~----~~-~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
.++..+. +. +-........++++|..+|.++.+.-
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 1222221 11 11122356679999999999987654
No 355
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.91 E-value=7.3e-09 Score=68.21 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=63.9
Q ss_pred CCcc-chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc
Q 030000 72 GGQR-RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES 150 (184)
Q Consensus 72 ~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~ 150 (184)
||+. +........++++|.+++|+|+.++...... .+.... .+.|.++|+||+|+.+........+.+..
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-- 73 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-- 73 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh--
Confidence 4433 4556667778999999999999765432211 111111 25789999999999644322222222221
Q ss_pred cCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 151 ITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
....++.+|++++.|++++.+.+.+.+
T Consensus 74 ---~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 ---KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 123578999999999999999998865
No 356
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.89 E-value=1.3e-08 Score=65.94 Aligned_cols=82 Identities=21% Similarity=0.198 Sum_probs=54.1
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHH-HHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 89 SAILYVVDAADRDSVPIARSELH-ELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
|.+++|+|+.++.+.... ++. ..+.. .++|+++|+||+|+.+......+...+... ....++.+||++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRHS----YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHhh----CCceEEEEeccCCc
Confidence 689999999876544322 222 22222 478999999999996543322322222111 12458899999999
Q ss_pred CHHHHHHHHHHH
Q 030000 168 NIDAVIDWLIKH 179 (184)
Q Consensus 168 ~i~~l~~~i~~~ 179 (184)
|++++.+.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988764
No 357
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.88 E-value=1.5e-08 Score=66.71 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=37.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CC--CCccceeEEEEeecCEEEEEEEcCCc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSE-DM--IPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~d~~g~ 74 (184)
..++++++|.+|+|||||++++.+..+.. .. ..|..... +... ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~--~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQW--IKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEE--EEec-CCEEEEECCCC
Confidence 45799999999999999999999766531 11 12322222 2222 45789999994
No 358
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.88 E-value=1.9e-08 Score=71.56 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=38.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--CCccceeEEEEeecCEEEEEEEcCCcc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDM--IPTVGFNMRKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~ 75 (184)
...++++++|.+|+|||||+|++.+.... ... +.|.... .+.. +..+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKL-GKGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEe-CCcEEEEECCCcC
Confidence 35689999999999999999999976542 221 2233332 2222 2358899999953
No 359
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.88 E-value=1.8e-08 Score=65.35 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=37.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEeecCEEEEEEEcCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~d~~g 73 (184)
...+++++|.+++||||+++++.+... ....++.+.... .+-..+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 457899999999999999999986543 233344443321 1112234689999999
No 360
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.87 E-value=1.8e-08 Score=71.35 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=37.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEeecCEEEEEEEcCCc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~ 74 (184)
..++++++|.+|+|||||+|++.+..... ..+.|.... .+... ..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEeC-CCEEEEECCCc
Confidence 46899999999999999999998755321 122233332 22222 25789999996
No 361
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.87 E-value=1.6e-08 Score=71.57 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=66.7
Q ss_pred CCcc-chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc
Q 030000 72 GGQR-RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES 150 (184)
Q Consensus 72 ~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~ 150 (184)
|||. +........++.+|++++|+|+.++.+... ..+...+ .+.|+++|+||+|+.+....+...+.+..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-- 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-- 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH--
Confidence 6655 344566777899999999999976544322 2222232 25799999999999654323333333321
Q ss_pred cCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 151 ITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
...+++.+|++++.|++++.+.+.+.++.
T Consensus 76 ---~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 ---KGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred ---cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 12368999999999999999998877653
No 362
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.85 E-value=1.1e-07 Score=65.31 Aligned_cols=83 Identities=20% Similarity=0.127 Sum_probs=56.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC--CCCCC---CCCccceeEEEEee---cCEEEEEEEcCCccchhH------hHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG--GYSED---MIPTVGFNMRKVTK---GNVTIKLWDLGGQRRFRT------MWER 83 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~--~~~~~---~~~t~~~~~~~~~~---~~~~~~~~d~~g~~~~~~------~~~~ 83 (184)
+..-|+|+|++++|||+|+|++++. .+... ...|.|+-.+.... .+..+.++||+|...... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4456789999999999999999988 55433 34567766665444 367899999999543211 1122
Q ss_pred hcc--CCCEEEEEEeCCCC
Q 030000 84 YCR--GVSAILYVVDAADR 100 (184)
Q Consensus 84 ~~~--~~~~~i~v~d~~~~ 100 (184)
.+. -++.+|+..+....
T Consensus 86 ~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 86 ALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHhCEEEEeccCccc
Confidence 222 37888888877543
No 363
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.84 E-value=3.6e-07 Score=58.15 Aligned_cols=147 Identities=21% Similarity=0.246 Sum_probs=79.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecC--EEEEEEEcC-C--------------------
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDLG-G-------------------- 73 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~-g-------------------- 73 (184)
+..+||.+.|+||+||||++..+.+.-. .....-.|+...++...+ .-|.++|.. |
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~-~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR-EKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH-hcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 3568999999999999999998863211 111223334444444332 335555554 2
Q ss_pred ----cc-chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCC
Q 030000 74 ----QR-RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGL 148 (184)
Q Consensus 74 ----~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~ 148 (184)
.+ ........+++.+|.+ ++|-- ...+.....+...+........|++.++.+.+-. .-.+++.+.-.
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvI--IIDEI--GpMElks~~f~~~ve~vl~~~kpliatlHrrsr~--P~v~~ik~~~~- 154 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVI--IIDEI--GPMELKSKKFREAVEEVLKSGKPLIATLHRRSRH--PLVQRIKKLGG- 154 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCEE--EEecc--cchhhccHHHHHHHHHHhcCCCcEEEEEecccCC--hHHHHhhhcCC-
Confidence 11 1112333445566754 44532 2334444444444444444678888888877641 11222222111
Q ss_pred CccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 149 ESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 149 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
-+++ .+.+|=+.+++.|.+.+..
T Consensus 155 --------v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 155 --------VYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred --------EEEE---EccchhhHHHHHHHHHhcc
Confidence 1332 5666667888888887654
No 364
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.83 E-value=7.6e-09 Score=75.78 Aligned_cols=99 Identities=24% Similarity=0.349 Sum_probs=63.4
Q ss_pred ccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-CHHHHHHHhC--CCc
Q 030000 74 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLG--LES 150 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~--~~~ 150 (184)
.++|......+.+.++++++|+|+.+...- ....+.... .+.|+++|+||+|+.+.. ..++..+.+. ...
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s--~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS--LIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCC--ccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence 567778888888899999999999764311 111222221 267999999999997543 2222222110 000
Q ss_pred cCCCceeEEEeeeccCCCHHHHHHHHHHH
Q 030000 151 ITDREVCCYMISCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 179 (184)
.......++.+||++|.|++++++.+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 11111248899999999999999999764
No 365
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4.9e-08 Score=70.11 Aligned_cols=80 Identities=24% Similarity=0.341 Sum_probs=57.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEee------------------cCEEEEEEEcCCcc---
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTK------------------GNVTIKLWDLGGQR--- 75 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~------------------~~~~~~~~d~~g~~--- 75 (184)
.++++++|.|++|||||.|++.......... .|+..+...... ....+.++|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 3689999999999999999999777543333 366655554321 12558899998822
Q ss_pred ----chhHhHHhhccCCCEEEEEEeCC
Q 030000 76 ----RFRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 76 ----~~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
-.....-..++.+|+++-|+|+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 23445556688899999999986
No 366
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.80 E-value=1.5e-08 Score=69.74 Aligned_cols=155 Identities=19% Similarity=0.158 Sum_probs=88.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----CccceeEEEEeecCEEEEEEEcCC----------ccchhHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI-----PTVGFNMRKVTKGNVTIKLWDLGG----------QRRFRTM 80 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~-----~t~~~~~~~~~~~~~~~~~~d~~g----------~~~~~~~ 80 (184)
..+..++++.|..++|||+|+|.++......... .|..+... .-+..+.++|.|| ..++...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f---~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF---HVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee---eccceEEEEecCCcccccCCccCcchHhHh
Confidence 3456899999999999999999998544322222 22222222 2345688899999 3334445
Q ss_pred HHhhccCC---CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--H----HHHHH-HhCC-C
Q 030000 81 WERYCRGV---SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--K----QALVD-QLGL-E 149 (184)
Q Consensus 81 ~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~----~~~~~-~~~~-~ 149 (184)
...|+.+. -.+++++|+..+- +........++. ..++|..+|+||+|...... . ..+.. ..++ .
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~g---e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~ 284 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPI--QPTDNPEIAWLG---ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR 284 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCC--CCCChHHHHHHh---hcCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence 55555433 3466677775432 222222222332 36899999999999755321 0 00111 0010 0
Q ss_pred ccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 150 SITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
.......|-+.+|+.++.|+++++-.|..
T Consensus 285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cceeccCCceeeecccccCceeeeeehhh
Confidence 11112334456999999999888755543
No 367
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.79 E-value=6.9e-08 Score=70.15 Aligned_cols=79 Identities=22% Similarity=0.224 Sum_probs=57.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC-CCC--CCCccceeEEEEeecC-----------------EEEEEEEcCCccc---
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGY-SED--MIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRR--- 76 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~-~~~--~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~--- 76 (184)
++++++|.|++|||||++.+.+... ... +..|.......+...+ ..+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999998765 332 2234555555444332 4688999999543
Q ss_pred ----hhHhHHhhccCCCEEEEEEeCC
Q 030000 77 ----FRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 77 ----~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
.....-..++++|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2334555688999999999985
No 368
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.75 E-value=7e-08 Score=62.51 Aligned_cols=54 Identities=28% Similarity=0.342 Sum_probs=38.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC-C--CCCCCccceeEEEEeecCEEEEEEEcCC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY-S--EDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~~d~~g 73 (184)
....+++++|.+|+|||||+|.+.+... . .....|.......+ ...+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCC
Confidence 3568899999999999999999997553 2 22233444433332 23589999998
No 369
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.74 E-value=6.4e-08 Score=68.92 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=66.7
Q ss_pred cCCcc-chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCC
Q 030000 71 LGGQR-RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE 149 (184)
Q Consensus 71 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 149 (184)
.|||. +........++.+|++++|+|+.++.+... ..+...+ .+.|.++|+||+|+.+....+...+.+..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~- 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEE- 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHH-
Confidence 46765 344566677899999999999976544322 2223232 25899999999999643222333332311
Q ss_pred ccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 150 SITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
...+++.+|++++.|++++.+.+.+.++.
T Consensus 79 ----~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 79 ----QGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred ----cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 12368899999999999999988877643
No 370
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.74 E-value=5.6e-08 Score=61.94 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=50.6
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEE
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
....++++|++++|+|+.++.+.. ...+...+.... .++|+++++||+|+.+.....+..+.+... ...+++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~--~~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~-----~~~ii~ 76 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFR--PPDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKE-----GIVVVF 76 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccC--CHHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhc-----CCeEEE
Confidence 345678899999999998765443 112233332221 468999999999996544333333333221 246889
Q ss_pred eeeccCCC
Q 030000 161 ISCKDSIN 168 (184)
Q Consensus 161 ~Sa~~~~~ 168 (184)
+||+++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99988764
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.72 E-value=2.1e-07 Score=66.95 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=73.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCC---------CC------------CCccceeEEEE-----------------e
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSE---------DM------------IPTVGFNMRKV-----------------T 60 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~---------~~------------~~t~~~~~~~~-----------------~ 60 (184)
.-.|+++|++|+||||++..+...-... .. ..-.+...... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999886210000 00 00011111110 1
Q ss_pred ecCEEEEEEEcCCccchhH----hHHhh---c-----cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEE
Q 030000 61 KGNVTIKLWDLGGQRRFRT----MWERY---C-----RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLG 128 (184)
Q Consensus 61 ~~~~~~~~~d~~g~~~~~~----~~~~~---~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~ 128 (184)
..++.+.++||||...... ..... + ...+..++|+|++.. ...... ...+... -.+.-+++
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giIl 266 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGIIL 266 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEEE
Confidence 2457899999999543221 11111 1 236778999999743 223332 2222211 12346779
Q ss_pred eCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 129 NKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 129 nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
||.|...... .-...... ..|+.+++ +|++++++.
T Consensus 267 TKlD~t~~~G~~l~~~~~~--------~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 267 TKLDGTAKGGVVFAIADEL--------GIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred ECCCCCCCccHHHHHHHHH--------CCCEEEEe--CCCChhhCc
Confidence 9999654322 12222222 23677776 788877654
No 372
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.70 E-value=1.1e-07 Score=67.31 Aligned_cols=82 Identities=23% Similarity=0.396 Sum_probs=59.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeec-----------------CEEEEEEEcCCccc-
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKG-----------------NVTIKLWDLGGQRR- 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~-----------------~~~~~~~d~~g~~~- 76 (184)
.+..+++++|.|++|||||+|.+.+........| |++.+...+... ...++++|.+|.-.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3568999999999999999999998777655444 666555544322 25589999988332
Q ss_pred ------hhHhHHhhccCCCEEEEEEeCC
Q 030000 77 ------FRTMWERYCRGVSAILYVVDAA 98 (184)
Q Consensus 77 ------~~~~~~~~~~~~~~~i~v~d~~ 98 (184)
.....-..++.+|+++=|+++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 3334455678899998888875
No 373
>PRK14974 cell division protein FtsY; Provisional
Probab=98.70 E-value=1.1e-07 Score=68.69 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=52.2
Q ss_pred CEEEEEEEcCCccchh----HhHHhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 63 NVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
++.+.++||+|..... ...... ..+.+.+++|+|+.......... ..+... - ..--+++||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a---~~f~~~---~-~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA---REFNEA---V-GIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH---HHHHhc---C-CCCEEEEeeecCCCC
Confidence 4679999999965322 122222 22578899999986543222222 222211 1 124567899998654
Q ss_pred cCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 137 LSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 137 ~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
... -...... ..|+.+++ +|++++++.
T Consensus 295 ~G~~ls~~~~~--------~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 GGAALSIAYVI--------GKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ccHHHHHHHHH--------CcCEEEEe--CCCChhhcc
Confidence 322 2222222 23577776 788887765
No 374
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1.2e-07 Score=71.53 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=69.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDA 97 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~ 97 (184)
+++-|+|+|++|+|||||++.+...-.........| ....+..+...+++.++|.. .+.+....+-+|.+++++|.
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-PiTvvsgK~RRiTflEcp~D---l~~miDvaKIaDLVlLlIdg 143 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-PITVVSGKTRRITFLECPSD---LHQMIDVAKIADLVLLLIDG 143 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-ceEEeecceeEEEEEeChHH---HHHHHhHHHhhheeEEEecc
Confidence 567788999999999999999973222111111122 23345567788999999932 23334445668999999998
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCccccc
Q 030000 98 ADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEAL 137 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~ 137 (184)
+-.--.+. ..+..++.. .+.| ++-|+|..|+....
T Consensus 144 nfGfEMET--mEFLnil~~---HGmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 144 NFGFEMET--MEFLNILIS---HGMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred ccCceehH--HHHHHHHhh---cCCCceEEEEeecccccCh
Confidence 75433322 222333333 3444 66778999998754
No 375
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.67 E-value=5.6e-08 Score=62.59 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
-.++++|++|+|||||+|.+.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999965
No 376
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.66 E-value=1.1e-07 Score=68.55 Aligned_cols=55 Identities=25% Similarity=0.387 Sum_probs=37.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--CCccceeEEEEeecCEEEEEEEcCCc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDM--IPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~ 74 (184)
....+++|+|-|++|||||||+|.+.... .+. +.|.+.....+.. .+.++||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCc
Confidence 45689999999999999999999976652 111 2233332222222 3889999994
No 377
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.65 E-value=2.3e-07 Score=60.21 Aligned_cols=21 Identities=48% Similarity=0.612 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030000 22 LSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~ 42 (184)
++++|..|+|||||+++++..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999999854
No 378
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.65 E-value=3.2e-07 Score=64.67 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=53.5
Q ss_pred cCEEEEEEEcCCccchhHhH----H---hhc-----cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEe
Q 030000 62 GNVTIKLWDLGGQRRFRTMW----E---RYC-----RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGN 129 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~----~---~~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~n 129 (184)
.++.+.++||||........ . ... ..+|.+++|+|++. ....... ...+.+.. .+.-+++|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~-~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQ-AKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHH-HHHHHhhC----CCCEEEEE
Confidence 45789999999965432221 1 111 13788999999964 3333332 23333221 23467789
Q ss_pred CCCcccccC-HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 130 KIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 130 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|.|...... .-......+ .|+.+++ +|++++++.
T Consensus 226 KlDe~~~~G~~l~~~~~~~--------~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYELK--------LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCccHHHHHHHHHC--------cCEEEEe--CCCChHhCc
Confidence 999755432 222222222 3577776 788877664
No 379
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.64 E-value=3.4e-07 Score=60.75 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=62.8
Q ss_pred EEEEEEEcCCccchhH------hHHhhccCC---CEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCc
Q 030000 64 VTIKLWDLGGQRRFRT------MWERYCRGV---SAILYVVDAAD-RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~------~~~~~~~~~---~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 133 (184)
-.+.++|+|||-+... ....++++. -++++++|..- -++..-+...+..+. ..-.-.+|.|=+++|.|+
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAls-AMi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALS-AMISLEVPHINVLSKMDL 176 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHH-HHHHhcCcchhhhhHHHH
Confidence 4478999999765432 222333332 24777777641 112222222222221 111246899999999999
Q ss_pred ccccCHHHHHHHhCCCccC---------------------------CCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 134 SEALSKQALVDQLGLESIT---------------------------DREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
......+++.+.+.-.... ..-+.+++....+.+.|+.++..|-..++
T Consensus 177 lk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 177 LKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred hhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 8875555554444321110 12345666666666667777766665554
No 380
>PRK12288 GTPase RsgA; Reviewed
Probab=98.63 E-value=1.9e-07 Score=67.89 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=34.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC-C---------CCccceeEEEEeecCEEEEEEEcCCccchh
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSED-M---------IPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~-~---------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 78 (184)
++++|.+|+|||||+|+|++...... . ..|.......+..+ ..++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 68999999999999999996542211 1 11223333333322 2489999976543
No 381
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.61 E-value=5.6e-07 Score=75.19 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=63.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCC----CCcccee-EEEEe-ecCEEEEEEEcCC----cc----chhHhHHhhc--
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSEDM----IPTVGFN-MRKVT-KGNVTIKLWDLGG----QR----RFRTMWERYC-- 85 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~~----~~t~~~~-~~~~~-~~~~~~~~~d~~g----~~----~~~~~~~~~~-- 85 (184)
.+|+|++|+||||++... +-.++-.. ..+.+.. ...++ +-.-+-.++|++| ++ .....|..++
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~ 192 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL 192 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence 589999999999999987 33443211 1111100 00011 1112356899999 21 2333444443
Q ss_pred -------cCCCEEEEEEeCCCCCC--HH-------HHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 86 -------RGVSAILYVVDAADRDS--VP-------IARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 86 -------~~~~~~i~v~d~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+..+++|+++|+.+--. .. .+...+.++.... ....|+.+++||+|+..
T Consensus 193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhhc
Confidence 34799999999864321 11 2222233333232 35799999999999875
No 382
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.59 E-value=3.3e-07 Score=62.70 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=52.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEeecCEEEEEEEcCCccch-------hHhHHhhccCCCE
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRRF-------RTMWERYCRGVSA 90 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~~-------~~~~~~~~~~~~~ 90 (184)
.++.++|-|.+||||++..+.+...+.... +|.......++...-++++.|.||.-+. ........+-|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 589999999999999999997433322111 1222222234567788999999994321 1223334566889
Q ss_pred EEEEEeCCCC
Q 030000 91 ILYVVDAADR 100 (184)
Q Consensus 91 ~i~v~d~~~~ 100 (184)
+++|.|+..+
T Consensus 140 i~~vld~~kp 149 (358)
T KOG1487|consen 140 IFIVLDVLKP 149 (358)
T ss_pred EEEEeeccCc
Confidence 9999998753
No 383
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.57 E-value=1.9e-07 Score=59.93 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=36.0
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCC
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 132 (184)
++.+.++||+|.... ...++..+|-++++..+.-.+.+.-... .. ...--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~------~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA---GI------MEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh---hH------hhhcCEEEEeCCC
Confidence 578999999986432 2346777998999888753222222111 11 1233478899987
No 384
>PRK01889 GTPase RsgA; Reviewed
Probab=98.57 E-value=7.5e-07 Score=65.26 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=58.8
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
..++|.+++|+++..+-....+..++..... .+++.++|+||+|+.+. .++..+.+... ...++++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 5789999999999755555556666555433 36788999999999754 21222222111 234579999999
Q ss_pred cCCCHHHHHHHHH
Q 030000 165 DSINIDAVIDWLI 177 (184)
Q Consensus 165 ~~~~i~~l~~~i~ 177 (184)
+|.|++++.+++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999998875
No 385
>PRK13796 GTPase YqeH; Provisional
Probab=98.53 E-value=4.3e-07 Score=66.79 Aligned_cols=54 Identities=22% Similarity=0.186 Sum_probs=34.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC--------CCCCCCccceeEEEEeecCEEEEEEEcCCcc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGY--------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 75 (184)
..++.++|.+|+|||||+|+++.... ...++.|.+.....+.. ...++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC---CcEEEECCCcc
Confidence 45899999999999999999985431 11122343332222221 14799999953
No 386
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.50 E-value=4.7e-06 Score=60.03 Aligned_cols=133 Identities=18% Similarity=0.152 Sum_probs=76.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC--------------CC---CCCccceeEEEEe----------------------ec
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYS--------------ED---MIPTVGFNMRKVT----------------------KG 62 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~--------------~~---~~~t~~~~~~~~~----------------------~~ 62 (184)
.++.|--|||||||+++++..... .. .....+.....+. ..
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 468899999999999999943321 01 0111111122211 12
Q ss_pred CEEEEEEEcCCccchhHhHHhhcc--------CCCEEEEEEeCCCCCCHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCR--------GVSAILYVVDAADRDSVPI-ARSELHELLMKPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iivv~nK~D~ 133 (184)
.....++++.|...-......+.. ..|++|.|+|+........ ....+...+.. --++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccC
Confidence 366778888885554433333322 3578999999875433222 23333333333 23888999999
Q ss_pred ccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 134 SEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
.++...+.....+... ....+++.+|.
T Consensus 158 v~~~~l~~l~~~l~~l---np~A~i~~~~~ 184 (323)
T COG0523 158 VDAEELEALEARLRKL---NPRARIIETSY 184 (323)
T ss_pred CCHHHHHHHHHHHHHh---CCCCeEEEccc
Confidence 8877655555555432 33456777765
No 387
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.50 E-value=4.3e-07 Score=66.66 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=35.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCC------C--CCCCCccceeEEEEeecCEEEEEEEcCCccc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGY------S--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~------~--~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
..++.++|.+|+|||||+|++++... . ..++.|.+.. .+.. +-.+.++||||...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~-~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPL-DDGHSLYDTPGIIN 216 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEe-CCCCEEEECCCCCC
Confidence 36899999999999999999996432 1 1122233322 2222 12357999999543
No 388
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.50 E-value=2e-07 Score=61.76 Aligned_cols=78 Identities=17% Similarity=0.134 Sum_probs=43.9
Q ss_pred CEEEEEEEcCCccchhHh--HHh---hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 63 NVTIKLWDLGGQRRFRTM--WER---YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~--~~~---~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
.....++++.|...-... ... ..-..+.+|.|+|+.+-.........+...+...+ ++++||+|+.+..
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD------vIvlnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD------VIVLNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S------EEEEE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC------EEEEeccccCChh
Confidence 456778888885443333 111 12246889999999653333334444444444433 8889999998876
Q ss_pred -CHHHHHHHh
Q 030000 138 -SKQALVDQL 146 (184)
Q Consensus 138 -~~~~~~~~~ 146 (184)
..+.+.+.+
T Consensus 158 ~~i~~~~~~i 167 (178)
T PF02492_consen 158 QKIERVREMI 167 (178)
T ss_dssp --HHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 324554444
No 389
>PRK13796 GTPase YqeH; Provisional
Probab=98.48 E-value=7.3e-07 Score=65.60 Aligned_cols=97 Identities=23% Similarity=0.268 Sum_probs=56.8
Q ss_pred chhHhHHhhccCCC-EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCC--Ccc
Q 030000 76 RFRTMWERYCRGVS-AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGL--ESI 151 (184)
Q Consensus 76 ~~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~--~~~ 151 (184)
.|...... +...+ .+++|+|+.+.. ......+.... .+.|+++|+||+|+.+... .++..+.... ...
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 44443333 44455 899999997643 11122222222 2678999999999975322 2222211110 001
Q ss_pred CCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 152 TDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
......++.+||++|.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 11112588999999999999999997654
No 390
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.48 E-value=2.3e-06 Score=63.66 Aligned_cols=110 Identities=18% Similarity=0.208 Sum_probs=61.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc-----C-CC---CCCC------------CCccceeEEEEe-----------------
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT-----G-GY---SEDM------------IPTVGFNMRKVT----------------- 60 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~-----~-~~---~~~~------------~~t~~~~~~~~~----------------- 60 (184)
+..|+++|++||||||++..+.. + +. .... ....+.......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45688999999999999998861 1 10 0000 001111111110
Q ss_pred ecCEEEEEEEcCCccchhH----hHHhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 61 KGNVTIKLWDLGGQRRFRT----MWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 61 ~~~~~~~~~d~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
..++.+.++||||...... ..... ..+.+-+++|+|+.....-......+.. . -.+.-+++||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~---~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD---S----VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh---c----cCCcEEEEECccCC
Confidence 1357899999999554322 11121 2346789999998754333222222221 1 23456779999975
Q ss_pred c
Q 030000 135 E 135 (184)
Q Consensus 135 ~ 135 (184)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 4
No 391
>PRK12289 GTPase RsgA; Reviewed
Probab=98.47 E-value=4.2e-07 Score=66.21 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=33.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC---CC-------CccceeEEEEeecCEEEEEEEcCCccc
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSED---MI-------PTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~---~~-------~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
++|+|++|+|||||+|+|++...... .. .|.......+..+ ..++||||...
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 78999999999999999996432211 11 2333333333222 26899999544
No 392
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.44 E-value=7.4e-07 Score=62.01 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=34.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC----------CCCCccceeEEEEeecCEEEEEEEcCCccc
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSE----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~----------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
.++++|.+|+|||||+|++.+..... ....|.......+. + -.++||||...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~--~--~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH--G--GLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC--C--cEEEeCCCccc
Confidence 67899999999999999999643211 11123344444342 2 37899999654
No 393
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.41 E-value=1.5e-06 Score=61.25 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=33.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC----------CCCCCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYS----------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~----------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
..+++|++|+|||||+|++.+.... ...-+|.......+..++ .++||||...+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 4568899999999999999852211 111123333334443332 57899997554
No 394
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.36 E-value=1.5e-06 Score=57.32 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=38.3
Q ss_pred CEEEEEEEcCCccchh----HhHHhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 63 NVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
++.+.++|+||..... ...... ....+.+++|+|+.... . .......+.... + ..-++.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--~-~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--D-AVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--H-HHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 5678899999964321 111111 23488999999986432 2 223333333222 2 24566799997553
No 395
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.34 E-value=2.7e-06 Score=60.64 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC----------CCccceeEEEEeecCEEEEEEEcCCccch
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDM----------IPTVGFNMRKVTKGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 77 (184)
-.++++|++|+|||||+|.+.+....... ..|........... ..++||||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 46899999999999999999865432111 01222222222212 258999998664
No 396
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=7.4e-07 Score=66.47 Aligned_cols=112 Identities=20% Similarity=0.288 Sum_probs=73.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC------------CCCCCC--CCccceeEEE--------------------EeecC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG------------GYSEDM--IPTVGFNMRK--------------------VTKGN 63 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~------------~~~~~~--~~t~~~~~~~--------------------~~~~~ 63 (184)
+.-++.|+.+...|||||...+... +|.... .+..++.... -+..+
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 4467889999999999999999721 111110 0111111111 11235
Q ss_pred EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
+-++++|.||+-+|.+..-..++-.|+.++|+|.-+.--.+ ....+.+.+. .++.-+++.||.|..
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQ-TETVLrQA~~----ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIA----ERIKPVLVMNKMDRA 163 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEec-hHHHHHHHHH----hhccceEEeehhhHH
Confidence 88999999999999999999999999999999986532222 2222333333 245556779999953
No 397
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.31 E-value=5e-07 Score=65.41 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=46.8
Q ss_pred hHHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee-EEEEeecCEEEEEEEcCCc
Q 030000 3 FLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN-MRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~d~~g~ 74 (184)
|++.+++.-+-...++++.|+++|-|++||||+||+|...+.- ...|..|.. .+.+-.-...+.++|+||.
T Consensus 291 lI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVC-kvAPIpGETKVWQYItLmkrIfLIDcPGv 362 (572)
T KOG2423|consen 291 LIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVC-KVAPIPGETKVWQYITLMKRIFLIDCPGV 362 (572)
T ss_pred HHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccc-cccCCCCcchHHHHHHHHhceeEecCCCc
Confidence 5555666666667889999999999999999999999765542 222222211 1111112245788999994
No 398
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.31 E-value=1.1e-05 Score=58.22 Aligned_cols=67 Identities=12% Similarity=0.042 Sum_probs=37.8
Q ss_pred EEEEEEEcCCccchhHhHHhhcc--------CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCR--------GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
....++++.|...-......++. ..++++.|+|+.+..............+.. --++++||+|+.+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence 55678889887655444443321 247899999986432211111111112222 2378899999876
Q ss_pred c
Q 030000 136 A 136 (184)
Q Consensus 136 ~ 136 (184)
.
T Consensus 165 ~ 165 (318)
T PRK11537 165 E 165 (318)
T ss_pred H
Confidence 4
No 399
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.28 E-value=8.9e-07 Score=59.44 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=35.8
Q ss_pred cCEEEEEEEcCCccchhH----hHHhhc--cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 62 GNVTIKLWDLGGQRRFRT----MWERYC--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~----~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+++++.++||||...... .+..++ ...+-+++|++++... ..+. ....+.... +. -=+++||.|...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~~---~~-~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLE-QALAFYEAF---GI-DGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHH-HHHHHHHHS---ST-CEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHH-HHHHHhhcc---cC-ceEEEEeecCCC
Confidence 347799999999544322 122211 2467889999986532 2232 222222221 22 245589999754
No 400
>PRK13695 putative NTPase; Provisional
Probab=98.25 E-value=6.1e-05 Score=49.75 Aligned_cols=21 Identities=43% Similarity=0.639 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
++|+++|++|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999865
No 401
>PRK00098 GTPase RsgA; Reviewed
Probab=98.25 E-value=5.7e-06 Score=59.33 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
-.++++|++|+|||||+|.+++..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999998654
No 402
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.24 E-value=6.8e-05 Score=55.34 Aligned_cols=23 Identities=13% Similarity=0.466 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
..+=|+|+|+..+|||||+++|.
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred CceEEEeecCcccCchhHHHHHH
Confidence 46789999999999999999997
No 403
>PRK10867 signal recognition particle protein; Provisional
Probab=98.20 E-value=6.5e-06 Score=61.61 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=36.7
Q ss_pred cCEEEEEEEcCCccchh----HhHHhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 62 GNVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
.++.+.++||||..... ...... .-..+.+++|+|+... +........+.... ++ .-+++||.|...
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~i-~giIlTKlD~~~ 254 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---GL-TGVILTKLDGDA 254 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---CC-CEEEEeCccCcc
Confidence 34779999999954321 111111 2256778999998642 33333333332221 12 245679999644
No 404
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=7.7e-06 Score=59.98 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-.++++|++|+||||++..+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999974
No 405
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.13 E-value=1.3e-05 Score=60.06 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=41.8
Q ss_pred cCEEEEEEEcCCccchh----HhHHhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 62 GNVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
.++.+.++||||..... ...... .-+.+.+++|+|+... .........+.... ++ .=++.||.|...
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~i-~giIlTKlD~~~ 253 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---GL-TGVVLTKLDGDA 253 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---CC-CEEEEeCccCcc
Confidence 34779999999953321 111111 2347889999998643 33333333332221 22 245589999543
Q ss_pred cc-CHHHHHHHhC
Q 030000 136 AL-SKQALVDQLG 147 (184)
Q Consensus 136 ~~-~~~~~~~~~~ 147 (184)
.. ....+....+
T Consensus 254 ~~G~~lsi~~~~~ 266 (428)
T TIGR00959 254 RGGAALSVRSVTG 266 (428)
T ss_pred cccHHHHHHHHHC
Confidence 22 2333444443
No 406
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.13 E-value=4e-05 Score=55.95 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=45.3
Q ss_pred CEEEEEEEcCCccchhHhHHhhc-------cCCCEEEEEEeCCCCCC--H--------------------HHHHHHHHHH
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYC-------RGVSAILYVVDAADRDS--V--------------------PIARSELHEL 113 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~-------~~~~~~i~v~d~~~~~~--~--------------------~~~~~~~~~~ 113 (184)
.....++++.|...-......+. -..+++|.|+|+.+... + ......+...
T Consensus 92 ~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q 171 (341)
T TIGR02475 92 RPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQ 171 (341)
T ss_pred CCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHH
Confidence 35677889998665544444331 13578999999864211 0 0011122222
Q ss_pred hcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhC
Q 030000 114 LMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG 147 (184)
Q Consensus 114 ~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~ 147 (184)
+.. .-++++||+|+.+....+.+.+.+.
T Consensus 172 i~~------AD~IvlnK~Dl~~~~~l~~~~~~l~ 199 (341)
T TIGR02475 172 LAC------ADLVILNKADLLDAAGLARVRAEIA 199 (341)
T ss_pred HHh------CCEEEEeccccCCHHHHHHHHHHHH
Confidence 222 2378899999988766655555543
No 407
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=1e-05 Score=58.62 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=35.9
Q ss_pred EeecCEEEEEEEcCCccc-hhHhHHhh-----ccCCCEEEEEEeCCCCCCHHHHHHHHHHH
Q 030000 59 VTKGNVTIKLWDLGGQRR-FRTMWERY-----CRGVSAILYVVDAADRDSVPIARSELHEL 113 (184)
Q Consensus 59 ~~~~~~~~~~~d~~g~~~-~~~~~~~~-----~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 113 (184)
+..+++.+.|+||.|... -.++.... .-+.|-+|+|.|++-.+.-......+...
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 345679999999999432 22222221 23578999999998776666666555554
No 408
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=1.5e-05 Score=58.58 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+++|+.|+||||++..+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHH
Confidence 34678999999999999999996
No 409
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.06 E-value=7.6e-05 Score=43.94 Aligned_cols=97 Identities=18% Similarity=0.072 Sum_probs=55.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHh-HHhhccCCCEEEEEEeCCCC
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM-WERYCRGVSAILYVVDAADR 100 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~ 100 (184)
+++.|..|+||||+...+...-.. .+.....++ .+.++|+++....... .......+|.++++++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK------RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 578899999999999888632111 122222222 7889999986543321 24456678999999987643
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcEEEEEe
Q 030000 101 DSVPIARSELHELLMKPSLSGIPLLVLGN 129 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~iivv~n 129 (184)
+....................+..+++|
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 72 -AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred -hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3333333322233333334455555554
No 410
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.05 E-value=4.2e-06 Score=60.64 Aligned_cols=65 Identities=26% Similarity=0.374 Sum_probs=42.7
Q ss_pred HHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecCEEEEEEEcCC
Q 030000 7 ILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g 73 (184)
+.++-+.-..++.++++|+|-|++||||+||+|..... -..+++.|.+. ..+ ..+-.+.+.|.||
T Consensus 240 lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV-~Ldk~i~llDsPg 306 (435)
T KOG2484|consen 240 LGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEV-KLDKKIRLLDSPG 306 (435)
T ss_pred hcCcccccccCcceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhhe-eccCCceeccCCc
Confidence 33333333456789999999999999999999986655 22233333222 222 2344688999999
No 411
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.04 E-value=5.4e-05 Score=51.43 Aligned_cols=64 Identities=25% Similarity=0.325 Sum_probs=38.7
Q ss_pred EEEEEEEcC-CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 64 VTIKLWDLG-GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 64 ~~~~~~d~~-g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
+.+.++||- |.+.|.. ...+++|.++.|+|++. .++....+ ..++..... -.++.+|+||+|..
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~-~sl~taer-i~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHHhC--CceEEEEEeeccch
Confidence 446666663 4444332 33567999999999863 34443333 233333311 37899999999964
No 412
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=3.3e-05 Score=58.91 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=58.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC------CC-----CCC-C-----------CccceeEEEEe-----------ecC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGG------YS-----EDM-I-----------PTVGFNMRKVT-----------KGN 63 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~------~~-----~~~-~-----------~t~~~~~~~~~-----------~~~ 63 (184)
+.-.|+++|+.|+||||++..|...- .. ... . ...++...... ..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 34578899999999999998886310 00 000 0 01111111111 135
Q ss_pred EEEEEEEcCCccchhHhHH------hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 64 VTIKLWDLGGQRRFRTMWE------RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
+.+.++||+|......... .... ....++|++.+. +.......+..+.. ..+.-+++||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 7899999999543222111 0111 234567777753 34444444333321 235668899999744
No 413
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.03 E-value=1.3e-05 Score=59.05 Aligned_cols=96 Identities=20% Similarity=0.259 Sum_probs=55.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc----CCCCC------CCCC-----------ccceeEEE-----------------E
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT----GGYSE------DMIP-----------TVGFNMRK-----------------V 59 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~----~~~~~------~~~~-----------t~~~~~~~-----------------~ 59 (184)
++..|+++|..||||||.+-.|.. .+... .+.| ..+..+.. .
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 467799999999999998877751 11000 0000 01111111 1
Q ss_pred eecCEEEEEEEcCCccchhH-hH---Hh--hccCCCEEEEEEeCCCCCCHHHHHHHHHHH
Q 030000 60 TKGNVTIKLWDLGGQRRFRT-MW---ER--YCRGVSAILYVVDAADRDSVPIARSELHEL 113 (184)
Q Consensus 60 ~~~~~~~~~~d~~g~~~~~~-~~---~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 113 (184)
....+++.|+||+|...... ++ .. ..-+.|=+++|+|+.-.+.-.+....+.+.
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~ 238 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEA 238 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhh
Confidence 12347899999999443322 11 11 134678899999998776666555555544
No 414
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.02 E-value=2.2e-05 Score=55.44 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=58.3
Q ss_pred ccCCCEEEEEEeCCCCC-CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 85 CRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
..+.|-.++++.+.+|+ +...+.+++..... .++..++++||+|+.+.++... .+. ...+....++++.+|+
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----~gi~pvIvlnK~DL~~~~~~~~-~~~--~~~y~~~gy~v~~~s~ 149 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----GGIEPVIVLNKIDLLDDEEAAV-KEL--LREYEDIGYPVLFVSA 149 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHH----cCCcEEEEEEccccCcchHHHH-HHH--HHHHHhCCeeEEEecC
Confidence 34466666767666554 44444554444422 5788888899999988766553 111 1123344668999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 030000 164 KDSINIDAVIDWLIKH 179 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~ 179 (184)
+++++++++.+.+...
T Consensus 150 ~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 150 KNGDGLEELAELLAGK 165 (301)
T ss_pred cCcccHHHHHHHhcCC
Confidence 9999999999887654
No 415
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.00 E-value=7.8e-06 Score=55.34 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=17.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
+-.+|+|+|||||||.++-..
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred cceEEEcCCCCCccchhhhHH
Confidence 445799999999999887665
No 416
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.99 E-value=0.00013 Score=51.71 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=67.3
Q ss_pred HHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccch------
Q 030000 4 LDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF------ 77 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~------ 77 (184)
|+.+.+.+..-...+-..++++|++|.|||+++++|......... .. ...+.+..+.+|.....
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d-~~---------~~~~PVv~vq~P~~p~~~~~Y~~ 115 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD-ED---------AERIPVVYVQMPPEPDERRFYSA 115 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC-CC---------CccccEEEEecCCCCChHHHHHH
Confidence 344444444433345577999999999999999999865433211 10 12335666666652221
Q ss_pred ------------------hHhHHhhccCCCEEEEEEeCCC---CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 030000 78 ------------------RTMWERYCRGVSAILYVVDAAD---RDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 78 ------------------~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 131 (184)
.......++....=++++|=-. ..+.......+..+....+.-++|++.+|++-
T Consensus 116 IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 116 ILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 1122234566777888888421 22333334444433333444689999998764
No 417
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.99 E-value=1.9e-05 Score=56.36 Aligned_cols=111 Identities=16% Similarity=0.238 Sum_probs=62.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc----CC-----------------------------CCC-CCCCcc-ceeEEE---E
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT----GG-----------------------------YSE-DMIPTV-GFNMRK---V 59 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~----~~-----------------------------~~~-~~~~t~-~~~~~~---~ 59 (184)
+++-|+++|-.|+||||-+-.+.. .. ... .++... ...+.. -
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 478889999999999998888761 00 000 000000 000000 1
Q ss_pred eecCEEEEEEEcCCccchhH-h------HHhhccCC-----CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEE
Q 030000 60 TKGNVTIKLWDLGGQRRFRT-M------WERYCRGV-----SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVL 127 (184)
Q Consensus 60 ~~~~~~~~~~d~~g~~~~~~-~------~~~~~~~~-----~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv 127 (184)
...++.+.++||+|.-.... + +.+.+... +-+++++|++-.+.--...+.+.+... +. =++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~------l~-GiI 290 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG------LD-GII 290 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC------Cc-eEE
Confidence 23568899999999433221 1 11222222 338888899877655555555555533 22 355
Q ss_pred EeCCCccc
Q 030000 128 GNKIDKSE 135 (184)
Q Consensus 128 ~nK~D~~~ 135 (184)
+||.|-..
T Consensus 291 lTKlDgtA 298 (340)
T COG0552 291 LTKLDGTA 298 (340)
T ss_pred EEecccCC
Confidence 89999644
No 418
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.98 E-value=0.0001 Score=54.24 Aligned_cols=110 Identities=16% Similarity=0.185 Sum_probs=58.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-----------------------EE-----------eecCE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-----------------------KV-----------TKGNV 64 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-----------------------~~-----------~~~~~ 64 (184)
.-.|+++||.|+||||.+-.|...-.-......+++... .. .-.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 556789999999999977776522110111122221111 00 12357
Q ss_pred EEEEEEcCCccchh----HhHHhhccCC--CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 65 TIKLWDLGGQRRFR----TMWERYCRGV--SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 65 ~~~~~d~~g~~~~~----~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
.+.++||.|...+. .....++..+ .-+.+|++++. ....+...+..+ ..-++. =+++||.|...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f----~~~~i~-~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQF----SLFPID-GLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHh----ccCCcc-eeEEEcccccC
Confidence 89999999965433 2333333332 23556777753 233344443333 222222 24479999644
No 419
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.97 E-value=2.6e-05 Score=58.58 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=19.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
++..|+++|++|+||||++..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 35678999999999999988875
No 420
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.96 E-value=1.1e-05 Score=60.32 Aligned_cols=51 Identities=24% Similarity=0.372 Sum_probs=36.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc----eeEEEEeecCEEEEEEEcCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG----FNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~d~~g 73 (184)
.+.|++||-|++||||+||.|.+.+.. +...|.| +.+..+ .-.+-+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~l---s~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFL---SPSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEc---CCCceecCCCC
Confidence 589999999999999999999877653 2233333 222222 23477899999
No 421
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=2.4e-05 Score=58.32 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-.|+++|+.|+||||++..+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999997753
No 422
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.96 E-value=7.9e-06 Score=50.53 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.|+|.|++||||||+++.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999973
No 423
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.94 E-value=0.00032 Score=44.42 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
..--+++.|++|+|||++++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999998443
No 424
>PRK08118 topology modulation protein; Reviewed
Probab=97.93 E-value=9.3e-06 Score=53.23 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
+|+|+|++|||||||.+.+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999973
No 425
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=5.7e-05 Score=57.24 Aligned_cols=25 Identities=12% Similarity=0.452 Sum_probs=22.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
..+.=||+++|.+||||||+++.++
T Consensus 375 I~kGekVaIvG~nGsGKSTilr~Ll 399 (591)
T KOG0057|consen 375 IPKGEKVAIVGSNGSGKSTILRLLL 399 (591)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999998
No 426
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.92 E-value=0.00021 Score=45.41 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=59.3
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCC
Q 030000 24 LIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDS 102 (184)
Q Consensus 24 v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~ 102 (184)
.-|..|+||||+.-.+...-... ...+.-.+.- ....-.+.+.++|+|+... ......+..+|.++++.+.+ ..+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~-~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s 80 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKL-GKRVLLLDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTS 80 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhH
Confidence 55789999999877765211000 0000000000 0001117899999997532 33346688899999999985 334
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCc
Q 030000 103 VPIARSELHELLMKPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 133 (184)
+......+..+... ....++.+++|+++-
T Consensus 81 ~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~ 109 (139)
T cd02038 81 ITDAYALIKKLAKQ--LRVLNFRVVVNRAES 109 (139)
T ss_pred HHHHHHHHHHHHHh--cCCCCEEEEEeCCCC
Confidence 44444444444322 135577899999974
No 427
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.92 E-value=3.8e-05 Score=54.23 Aligned_cols=25 Identities=32% Similarity=0.672 Sum_probs=22.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.+..+.|+|-||+|||||+|++..
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~ 165 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRN 165 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHH
Confidence 4689999999999999999999874
No 428
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=2.5e-05 Score=57.98 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
..++++|++||||||++..+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA 244 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLA 244 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999887
No 429
>PRK07261 topology modulation protein; Provisional
Probab=97.90 E-value=1e-05 Score=53.21 Aligned_cols=21 Identities=29% Similarity=0.725 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
.+|+|+|++|||||||...+.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLS 21 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 379999999999999999986
No 430
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.89 E-value=1.1e-05 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.+|+|+|++||||||+...+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 431
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.87 E-value=1.7e-05 Score=42.51 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
..+|.|+.||||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999886
No 432
>PRK04195 replication factor C large subunit; Provisional
Probab=97.85 E-value=0.00023 Score=54.63 Aligned_cols=37 Identities=30% Similarity=0.524 Sum_probs=27.1
Q ss_pred HHHHHHHhhhhccc-eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 5 DSILNWLRSLFFKQ-EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.+.+|+.++.... .-.+++.|++|+||||+++.+.+
T Consensus 24 ~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 24 EQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 45566665553222 45688999999999999999974
No 433
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.84 E-value=0.0002 Score=53.95 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=36.2
Q ss_pred CEEEEEEEcCCccchh----HhHHhhcc---CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 63 NVTIKLWDLGGQRRFR----TMWERYCR---GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~----~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
++.+.++||||..... ......+. ...-+++|++++. ....+...+..+ .. -+ +-=+++||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~~f-~~---~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYKHF-SR---LP-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHHHh-CC---CC-CCEEEEecccccc
Confidence 4789999999954332 22233333 2345678888753 233333333333 11 12 2257789999744
No 434
>PRK06696 uridine kinase; Validated
Probab=97.83 E-value=3.7e-05 Score=52.89 Aligned_cols=38 Identities=16% Similarity=0.455 Sum_probs=30.5
Q ss_pred hHHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 3 FLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+++.+.++.-.......+-|+|.|.+|||||||.+.+.
T Consensus 6 ~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~ 43 (223)
T PRK06696 6 LIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELA 43 (223)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 45566666655555678999999999999999999887
No 435
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=5.3e-05 Score=56.47 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=68.5
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHh----cCCC------------------------------------CCCCCCccc-
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIA----TGGY------------------------------------SEDMIPTVG- 53 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~----~~~~------------------------------------~~~~~~t~~- 53 (184)
..++++-|+++|-.|+||||-+-.+. ..++ ...|+....
T Consensus 374 ~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~ 453 (587)
T KOG0781|consen 374 RRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAG 453 (587)
T ss_pred hcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHH
Confidence 44578999999999999999777665 1110 000110000
Q ss_pred e---eEEEEeecCEEEEEEEcCCccchhH----hHHhh--ccCCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCCCCCCc
Q 030000 54 F---NMRKVTKGNVTIKLWDLGGQRRFRT----MWERY--CRGVSAILYVVDAAD-RDSVPIARSELHELLMKPSLSGIP 123 (184)
Q Consensus 54 ~---~~~~~~~~~~~~~~~d~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 123 (184)
+ ....-...++.+.++||+|...... ....+ ....|.+++|-.+-- .++.+.+..+-..+... ..++.-
T Consensus 454 vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~-~~~r~i 532 (587)
T KOG0781|consen 454 VAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADH-STPRLI 532 (587)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcC-CCcccc
Confidence 0 0000124568899999999554332 22222 345789999887643 34555555544444333 333333
Q ss_pred EEEEEeCCCccc
Q 030000 124 LLVLGNKIDKSE 135 (184)
Q Consensus 124 iivv~nK~D~~~ 135 (184)
--++++|+|...
T Consensus 533 d~~~ltk~dtv~ 544 (587)
T KOG0781|consen 533 DGILLTKFDTVD 544 (587)
T ss_pred ceEEEEeccchh
Confidence 456789999654
No 436
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.83 E-value=0.0011 Score=44.00 Aligned_cols=67 Identities=18% Similarity=0.105 Sum_probs=47.7
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
..+.+.++|+|+.... .....+..+|.+++++..+ ..+.......+..+.. .+.|+.+++||+|...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDLERAVELVRH----FGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCc
Confidence 5688999999975432 3345567899999999987 4466666666554432 2567889999999754
No 437
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00044 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=19.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.-.++++|+.||||||++..+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34457899999999999999886
No 438
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.82 E-value=2.3e-05 Score=53.76 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-|+++|++|||||||++.+.+
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999974
No 439
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.81 E-value=0.00012 Score=38.40 Aligned_cols=44 Identities=30% Similarity=0.381 Sum_probs=25.8
Q ss_pred CCCEEEEEEeCCCCC--CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCC
Q 030000 87 GVSAILYVVDAADRD--SVPIARSELHELLMKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 132 (184)
-.++++|++|++... +.+.....+.++...+ .+.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 367899999998644 4555555555554332 3899999999998
No 440
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.00014 Score=60.38 Aligned_cols=112 Identities=21% Similarity=0.233 Sum_probs=61.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC-CC---CccceeEEEEe-ecCEEEEEEEcCC----c----cchhHhHHhh----
Q 030000 22 LSLIGLQNAGKTSLVNTIATGGYSED-MI---PTVGFNMRKVT-KGNVTIKLWDLGG----Q----RRFRTMWERY---- 84 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~~~~~-~~---~t~~~~~~~~~-~~~~~~~~~d~~g----~----~~~~~~~~~~---- 84 (184)
-+|+|++|+||||++..-. .+|+-. .. ...+..+..++ +-.-.-.++||.| + +.....|..+
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 4789999999999887553 222211 00 01111111111 1123356789888 2 1233445533
Q ss_pred -----ccCCCEEEEEEeCCCCCCHHH---------HHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 85 -----CRGVSAILYVVDAADRDSVPI---------ARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 85 -----~~~~~~~i~v~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
.+-.+++|+.+|+.+--+-.. +..-+.++ ...-.-..|+.+++||.|+..
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El-~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQEL-RETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHH-HHhhccCCceEEEEecccccc
Confidence 345799999999864221111 11112222 223335799999999999976
No 441
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.80 E-value=5.3e-05 Score=53.03 Aligned_cols=19 Identities=32% Similarity=0.615 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
|+++|.+||||||+.+.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La 20 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELA 20 (249)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999886
No 442
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.80 E-value=1.9e-05 Score=50.27 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
|+++|++||||||+++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999997
No 443
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.79 E-value=1.9e-05 Score=53.74 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-|+|+|++|||||||++.+-.-
T Consensus 32 e~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 35789999999999999999643
No 444
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.79 E-value=2.5e-05 Score=53.81 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=23.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.+..++++|+|++|||||+|+..++..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 456799999999999999999999843
No 445
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.78 E-value=2.3e-05 Score=52.61 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
+.=.++++|++|||||||++.+-.-+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 34567899999999999999996433
No 446
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.78 E-value=7.2e-05 Score=48.42 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=34.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
.=.++++|++|||||||++.+.. -..+|.|.-+.+ ++. +.+.+.+.|+.......+..
T Consensus 29 Ge~iaitGPSG~GKStllk~va~-----Lisp~~G~l~f~--Ge~-----vs~~~pea~Rq~VsY~~Q~p 86 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVAS-----LISPTSGTLLFE--GED-----VSTLKPEAYRQQVSYCAQTP 86 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHh-----ccCCCCceEEEc--Ccc-----ccccChHHHHHHHHHHHcCc
Confidence 34678999999999999999973 233444433332 211 22345666666555544433
No 447
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.77 E-value=6.8e-05 Score=49.17 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-+.|+|..|||||||++++..
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHH
Confidence 4578999999999999999973
No 448
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.76 E-value=2.9e-05 Score=42.95 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
|++.|++||||||+.+.+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999999973
No 449
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00055 Score=50.85 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=58.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC----C-C--------------------CCCccceeEEEE-----------eec
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYS----E-D--------------------MIPTVGFNMRKV-----------TKG 62 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~----~-~--------------------~~~t~~~~~~~~-----------~~~ 62 (184)
+..|+++|++|+||||.+..+...-.. . . +....+...... ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 456889999999999999887621000 0 0 000111111111 124
Q ss_pred CEEEEEEEcCCccchh----HhHHhhccC--CC-EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 63 NVTIKLWDLGGQRRFR----TMWERYCRG--VS-AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~----~~~~~~~~~--~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
++.+.++||+|..... ......+.. .+ -.++|+|++.. ...+...+..+.. - -+-=+++||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~----~-~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP----F-SYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC----C-CCCEEEEEeccCCC
Confidence 5789999999954322 122222222 23 57899999754 3334443333311 1 12345689999654
No 450
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.75 E-value=0.00024 Score=47.03 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.-.++++|+.|+|||||++.+.+-
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4457889999999999999999754
No 451
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.75 E-value=0.00012 Score=55.59 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
--++++|+.|+||||++..|.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred cEEEEECCCCccHHHHHHHHH
Confidence 457899999999999999887
No 452
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.74 E-value=0.00031 Score=49.57 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=24.9
Q ss_pred HHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.+..+.....--|+|.|++||||||+++.++..
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 3444444344446899999999999999998744
No 453
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.72 E-value=1.9e-05 Score=51.53 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999743
No 454
>PF05729 NACHT: NACHT domain
Probab=97.71 E-value=0.00039 Score=45.21 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
++|.|++|+||||++..+..
T Consensus 3 l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 67999999999999999873
No 455
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.69 E-value=4e-05 Score=48.45 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.-.++|+|+.|||||||++.+.+.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEccCCCccccceeeeccc
Confidence 3456889999999999999999743
No 456
>PRK06217 hypothetical protein; Validated
Probab=97.66 E-value=4.5e-05 Score=50.80 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+|+|+|.+||||||+...|..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
No 457
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.66 E-value=5.2e-05 Score=51.63 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.+...|+|.|++|||||||++.+..
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678899999999999999999974
No 458
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.65 E-value=5.5e-05 Score=50.25 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=20.8
Q ss_pred HHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 5 DSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.+...+........-.++|.|++|+|||+|++++.
T Consensus 10 ~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 10 ERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp HHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 344444442233445668899999999999999887
No 459
>PHA00729 NTP-binding motif containing protein
Probab=97.65 E-value=0.00011 Score=50.12 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=22.8
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+....-.+|+++|++|+|||||+.++..
T Consensus 12 l~~~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 12 YNNNGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3333456899999999999999999874
No 460
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.00011 Score=58.48 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-|+++|+.|+||||++..+..
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 578999999999999998873
No 461
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.63 E-value=0.001 Score=47.02 Aligned_cols=111 Identities=18% Similarity=0.142 Sum_probs=60.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC---------C------------CCCCccceeEEEE--------------eecC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYS---------E------------DMIPTVGFNMRKV--------------TKGN 63 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~---------~------------~~~~t~~~~~~~~--------------~~~~ 63 (184)
.-+++++|++|+||||++..+...-.. . .+....++..... +..+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 368999999999999999887521100 0 0001112111110 1125
Q ss_pred EEEEEEEcCCccchh----HhHHhhc--cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 64 VTIKLWDLGGQRRFR----TMWERYC--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~----~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
+.+.++||||..... ..+...+ ...+-+++|+|++.. ..........+ .. - .+-=+++||.|....
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f-~~---~-~~~~~I~TKlDet~~ 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNF-KD---I-HIDGIVFTKFDETAS 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHh-CC---C-CCCEEEEEeecCCCC
Confidence 789999999965322 1122222 234668899998532 22333333333 11 1 223456899997653
No 462
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.62 E-value=5.1e-05 Score=49.26 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.++|.+|||||||++++..
T Consensus 3 vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999983
No 463
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.62 E-value=5.7e-05 Score=45.34 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
-.++++|++|||||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457899999999999999985
No 464
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.61 E-value=6.1e-05 Score=49.38 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
+|.+.|++|+||||++++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i 20 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVI 20 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999987
No 465
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.61 E-value=0.00077 Score=47.68 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
--++.|--|+|||||+|.++.+
T Consensus 59 vtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 59 VTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred eEEEEecccCChHHHHHHHHcc
Confidence 3368999999999999999843
No 466
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.61 E-value=5.4e-05 Score=50.02 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
..+.-.++++|+.|||||||++.++
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3455678999999999999999886
No 467
>PRK01889 GTPase RsgA; Reviewed
Probab=97.61 E-value=0.00021 Score=52.66 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
-+++++|.+|+|||||++.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 478999999999999999998543
No 468
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.60 E-value=5.6e-05 Score=47.06 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
|+|.|.+||||||+++.|..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999973
No 469
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.60 E-value=0.0012 Score=39.53 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=47.8
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEe-ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC
Q 030000 22 LSLIG-LQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVT-KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 22 i~v~G-~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
|++.| ..|+||||+...+...-.. . +....-++ ...+.+.++|+|+..... ....+..+|.++++.+.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~-----~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~- 72 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-R-----GKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS- 72 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-C-----CCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-
Confidence 45666 6799999988877521111 0 11111111 111778999999865332 235667799999999875
Q ss_pred CCCHHHHHHHHH
Q 030000 100 RDSVPIARSELH 111 (184)
Q Consensus 100 ~~~~~~~~~~~~ 111 (184)
..++........
T Consensus 73 ~~s~~~~~~~~~ 84 (104)
T cd02042 73 PLDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHHHHH
Confidence 335555544433
No 470
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.60 E-value=0.00013 Score=50.40 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.+-|++.|++|||||||++.+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567889999999999999998874
No 471
>PRK03839 putative kinase; Provisional
Probab=97.59 E-value=6.3e-05 Score=49.94 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999963
No 472
>PRK06547 hypothetical protein; Provisional
Probab=97.58 E-value=0.00015 Score=47.77 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
......|+|.|.+||||||+.+.+..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678889999999999999999974
No 473
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.58 E-value=6.2e-05 Score=52.35 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-++++|+.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999984
No 474
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.57 E-value=8.9e-05 Score=50.41 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
++..-|+|+|++|||||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999974
No 475
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.55 E-value=8e-05 Score=46.56 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
|++.|++|+|||++++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999999999983
No 476
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.54 E-value=0.00012 Score=48.19 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=33.5
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHh
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQL 146 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~ 146 (184)
|++++|+|+.++.+-. ...+...+. ....+.|+++|+||+|+.+.....++.+.+
T Consensus 1 DvVl~VvDar~p~~~~--~~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLGCR--CPQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCCCC--CHHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence 7899999997753322 112222211 112468999999999997655554454444
No 477
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.54 E-value=8.4e-05 Score=47.09 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030000 22 LSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~ 42 (184)
|+++|++|||||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 679999999999999999853
No 478
>PRK14530 adenylate kinase; Provisional
Probab=97.53 E-value=8.2e-05 Score=50.89 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
.+|+|+|++||||||+.+.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999996
No 479
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.53 E-value=7.7e-05 Score=49.83 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
.++++|++|||||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999643
No 480
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.53 E-value=8.3e-05 Score=49.30 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.++|+|++||||||+++.+..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999864
No 481
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.53 E-value=0.00012 Score=48.87 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+..-.++++|++||||||+++.+++-
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44567999999999999999999843
No 482
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.53 E-value=8.5e-05 Score=48.12 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
++|+|.|.||+||||++++|.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 479999999999999999997
No 483
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.52 E-value=0.0011 Score=51.19 Aligned_cols=38 Identities=26% Similarity=0.539 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhhccc-eeEE-EEEcCCCCCHHHHHHHHhc
Q 030000 4 LDSILNWLRSLFFKQ-EMEL-SLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~-~~~i-~v~G~~~~GKstli~~~~~ 41 (184)
++.+.+|+....... .-+| ++.||+||||||.++.+..
T Consensus 28 v~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~ 67 (519)
T PF03215_consen 28 VEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAK 67 (519)
T ss_pred HHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 456788888754332 2344 6799999999999999873
No 484
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.52 E-value=0.00012 Score=48.03 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.=.+.|+|++|+|||||+|-+.+-
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhc
Confidence 346889999999999999998743
No 485
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.52 E-value=7.1e-05 Score=50.29 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
.+++||+|||||||++.+-
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 4799999999999999885
No 486
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.52 E-value=0.00016 Score=52.70 Aligned_cols=38 Identities=26% Similarity=0.467 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhhc--c-ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 4 LDSILNWLRSLFF--K-QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~--~-~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
++.+.++++.... . +.-=++++|++|+|||||.+++..
T Consensus 60 i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~ 100 (361)
T smart00763 60 IERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKR 100 (361)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3455566666533 2 223368999999999999999973
No 487
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.52 E-value=0.0043 Score=40.91 Aligned_cols=65 Identities=14% Similarity=-0.092 Sum_probs=42.4
Q ss_pred EEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 65 TIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 65 ~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
.+.++|+|+.... .....+..+|.+++++++.. .++......+..+... ......+++|+.|...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccc
Confidence 6999999986433 23445678999999998764 3555555544433221 2235678899998654
No 488
>PLN02674 adenylate kinase
Probab=97.52 E-value=0.00015 Score=50.35 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
....+|+++|+|||||+|+...+.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La 52 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIK 52 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHH
Confidence 446889999999999999999997
No 489
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.51 E-value=0.00018 Score=51.28 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+.++-|+|.|++||||||+++.+.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456889999999999999998764
No 490
>PRK08233 hypothetical protein; Provisional
Probab=97.51 E-value=0.00011 Score=48.83 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+-|+|.|.+|||||||.+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36688999999999999999973
No 491
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.00012 Score=53.07 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030000 22 LSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~ 42 (184)
++++|++|||||||++.+.+-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 568899999999999999843
No 492
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.51 E-value=7.4e-05 Score=47.19 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
....+|+|.|.||+|||||..++.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHH
Confidence 346899999999999999999997
No 493
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.50 E-value=9.3e-05 Score=49.92 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
|+|.|++|||||||++.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999964
No 494
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.50 E-value=9.2e-05 Score=49.40 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
..|+++|++||||||+++.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999997
No 495
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.49 E-value=0.00011 Score=46.17 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGY 44 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~ 44 (184)
-.++++|++|+||||++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999985443
No 496
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.49 E-value=0.00055 Score=42.92 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.--|++.|+.|+|||||++.+...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 346889999999999999999854
No 497
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=8.3e-05 Score=50.68 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.+. .++++|+.|||||||++.+.+-
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCC
Confidence 345 7899999999999999999753
No 498
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.47 E-value=0.0018 Score=41.99 Aligned_cols=19 Identities=37% Similarity=0.844 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
+.++|..+||||||+.++.
T Consensus 5 l~ivG~k~SGKTTLie~lv 23 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLV 23 (161)
T ss_pred EEEEecCCCChhhHHHHHH
Confidence 5799999999999999997
No 499
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.47 E-value=0.00013 Score=46.33 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.|+|+|+.+||||||+..+++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999973
No 500
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.46 E-value=0.0016 Score=44.09 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
-+++++|+.|+|||||++.+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 478999999999999999998
Done!