Query 030000
Match_columns 184
No_of_seqs 159 out of 1894
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 10:55:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ksh_A ARF-like protein 2; sma 100.0 2.4E-37 8.2E-42 205.6 19.7 173 10-183 8-181 (186)
2 1zd9_A ADP-ribosylation factor 100.0 7.1E-37 2.4E-41 203.7 19.8 170 15-184 18-187 (188)
3 2x77_A ADP-ribosylation factor 100.0 2.3E-37 7.9E-42 206.2 16.7 180 3-183 6-185 (189)
4 1zj6_A ADP-ribosylation factor 100.0 8.2E-37 2.8E-41 203.2 19.3 175 3-182 4-178 (187)
5 1r8s_A ADP-ribosylation factor 100.0 1.2E-36 4E-41 198.3 18.7 164 20-184 1-164 (164)
6 2b6h_A ADP-ribosylation factor 100.0 5.6E-37 1.9E-41 204.8 17.2 173 10-183 20-192 (192)
7 1fzq_A ADP-ribosylation factor 100.0 1.3E-36 4.4E-41 201.3 18.6 173 11-184 6-180 (181)
8 1upt_A ARL1, ADP-ribosylation 100.0 7.9E-36 2.7E-40 195.6 21.2 167 16-183 4-170 (171)
9 1moz_A ARL1, ADP-ribosylation 100.0 3E-36 1E-40 199.7 18.4 173 10-183 8-181 (183)
10 4bas_A ADP-ribosylation factor 100.0 3.2E-36 1.1E-40 202.1 16.8 170 14-183 12-190 (199)
11 4dkx_A RAS-related protein RAB 100.0 7.4E-37 2.5E-41 206.9 13.7 156 18-182 12-176 (216)
12 2h57_A ADP-ribosylation factor 100.0 1.1E-35 3.8E-40 198.2 17.6 169 16-184 18-189 (190)
13 2h17_A ADP-ribosylation factor 100.0 1.2E-35 4E-40 196.7 17.0 164 16-180 18-181 (181)
14 1m2o_B GTP-binding protein SAR 100.0 3.2E-35 1.1E-39 196.0 19.0 164 16-180 20-190 (190)
15 1f6b_A SAR1; gtpases, N-termin 100.0 6.5E-35 2.2E-39 195.7 16.8 164 16-180 22-197 (198)
16 3o47_A ADP-ribosylation factor 100.0 1.3E-34 4.6E-39 207.4 17.1 167 17-184 163-329 (329)
17 3ihw_A Centg3; RAS, centaurin, 100.0 1.5E-33 5.1E-38 187.0 13.5 160 15-183 16-181 (184)
18 1ek0_A Protein (GTP-binding pr 100.0 4.5E-34 1.5E-38 186.9 9.9 159 18-182 2-169 (170)
19 3lvq_E ARF-GAP with SH3 domain 100.0 2E-32 6.8E-37 206.4 19.2 166 17-183 320-485 (497)
20 1c1y_A RAS-related protein RAP 100.0 3.5E-33 1.2E-37 182.3 12.4 160 18-181 2-166 (167)
21 4dsu_A GTPase KRAS, isoform 2B 100.0 4.8E-33 1.6E-37 185.1 13.1 162 17-182 2-166 (189)
22 3q72_A GTP-binding protein RAD 100.0 1.2E-32 4E-37 179.7 14.3 160 19-184 2-166 (166)
23 1u8z_A RAS-related protein RAL 100.0 1.2E-32 4.1E-37 179.8 14.2 160 18-182 3-167 (168)
24 3oes_A GTPase rhebl1; small GT 100.0 3.5E-33 1.2E-37 187.7 11.9 161 15-183 20-188 (201)
25 3kkq_A RAS-related protein M-R 100.0 1E-32 3.4E-37 182.8 13.8 160 16-183 15-183 (183)
26 3bc1_A RAS-related protein RAB 100.0 4.5E-32 1.5E-36 181.1 16.6 162 16-182 8-185 (195)
27 1x3s_A RAS-related protein RAB 100.0 2.6E-32 8.8E-37 182.4 15.3 162 17-183 13-179 (195)
28 2fn4_A P23, RAS-related protei 100.0 6.6E-33 2.3E-37 183.2 12.1 164 16-183 6-173 (181)
29 2hup_A RAS-related protein RAB 100.0 4.8E-32 1.6E-36 182.1 16.4 161 17-183 27-194 (201)
30 1r2q_A RAS-related protein RAB 100.0 5.7E-32 2E-36 176.9 16.2 160 17-182 4-169 (170)
31 2bov_A RAla, RAS-related prote 100.0 2.5E-32 8.7E-37 184.0 14.9 163 15-182 10-177 (206)
32 3t5g_A GTP-binding protein RHE 100.0 1.7E-32 5.9E-37 181.3 13.9 162 17-183 4-170 (181)
33 1kao_A RAP2A; GTP-binding prot 100.0 3E-32 1E-36 177.7 14.6 160 18-182 2-166 (167)
34 1wms_A RAB-9, RAB9, RAS-relate 100.0 3.6E-32 1.2E-36 179.1 14.5 163 17-183 5-175 (177)
35 2fg5_A RAB-22B, RAS-related pr 100.0 1.3E-31 4.5E-36 178.8 17.4 162 16-183 20-187 (192)
36 2a9k_A RAS-related protein RAL 100.0 2.7E-32 9.2E-37 181.1 13.9 162 17-183 16-182 (187)
37 3reg_A RHO-like small GTPase; 100.0 4.3E-33 1.5E-37 186.2 9.9 161 16-183 20-189 (194)
38 2ew1_A RAS-related protein RAB 100.0 4.6E-32 1.6E-36 182.1 14.9 160 17-182 24-189 (201)
39 2atv_A RERG, RAS-like estrogen 100.0 2.3E-32 8E-37 183.0 12.9 166 12-183 21-192 (196)
40 3tkl_A RAS-related protein RAB 100.0 1.9E-31 6.5E-36 178.4 17.0 158 17-183 14-180 (196)
41 3q3j_B RHO-related GTP-binding 100.0 3.8E-32 1.3E-36 184.3 13.7 158 16-183 24-204 (214)
42 1z06_A RAS-related protein RAB 100.0 5.2E-32 1.8E-36 180.3 14.1 163 15-182 16-188 (189)
43 2efe_B Small GTP-binding prote 100.0 1.2E-31 4E-36 177.3 15.6 161 17-183 10-176 (181)
44 1z0f_A RAB14, member RAS oncog 100.0 1E-31 3.4E-36 177.2 15.1 160 17-182 13-178 (179)
45 2hxs_A RAB-26, RAS-related pro 100.0 2.2E-32 7.7E-37 180.3 12.0 162 17-183 4-174 (178)
46 1z2a_A RAS-related protein RAB 100.0 3.4E-32 1.2E-36 177.7 12.7 159 17-182 3-167 (168)
47 1z0j_A RAB-22, RAS-related pro 100.0 1.2E-31 4.1E-36 175.4 15.3 160 17-182 4-169 (170)
48 3q85_A GTP-binding protein REM 100.0 3.9E-32 1.3E-36 177.7 12.8 161 19-184 2-169 (169)
49 2p5s_A RAS and EF-hand domain 100.0 3.2E-32 1.1E-36 182.7 12.6 166 12-183 21-198 (199)
50 4gzl_A RAS-related C3 botulinu 100.0 2.4E-32 8.3E-37 184.0 11.9 173 6-180 16-203 (204)
51 2f7s_A C25KG, RAS-related prot 100.0 7E-32 2.4E-36 183.3 14.2 161 17-182 23-199 (217)
52 3tw8_B RAS-related protein RAB 100.0 1.7E-31 6E-36 176.3 15.7 160 17-183 7-172 (181)
53 2gf9_A RAS-related protein RAB 100.0 6.1E-32 2.1E-36 180.0 13.5 158 16-182 19-185 (189)
54 2nzj_A GTP-binding protein REM 100.0 6.3E-32 2.2E-36 177.6 13.3 161 17-183 2-170 (175)
55 2erx_A GTP-binding protein DI- 100.0 2.5E-32 8.7E-37 178.9 11.4 162 18-184 2-169 (172)
56 2bme_A RAB4A, RAS-related prot 100.0 2.8E-31 9.6E-36 176.2 16.5 160 17-182 8-173 (186)
57 2g6b_A RAS-related protein RAB 100.0 8.7E-32 3E-36 177.7 14.0 162 16-183 7-175 (180)
58 2oil_A CATX-8, RAS-related pro 100.0 2.9E-31 9.9E-36 177.2 16.6 160 17-182 23-188 (193)
59 1z08_A RAS-related protein RAB 100.0 5.3E-32 1.8E-36 177.2 12.7 160 17-182 4-169 (170)
60 1g16_A RAS-related protein SEC 100.0 2.6E-32 8.7E-37 178.6 11.0 160 18-183 2-166 (170)
61 2ce2_X GTPase HRAS; signaling 100.0 9.5E-32 3.3E-36 175.1 13.6 161 18-182 2-165 (166)
62 3con_A GTPase NRAS; structural 100.0 9.3E-32 3.2E-36 179.2 13.8 164 15-183 17-184 (190)
63 2il1_A RAB12; G-protein, GDP, 100.0 5.2E-32 1.8E-36 180.7 12.5 163 16-183 23-191 (192)
64 2y8e_A RAB-protein 6, GH09086P 100.0 3.7E-32 1.3E-36 179.3 11.5 160 18-183 13-178 (179)
65 1zbd_A Rabphilin-3A; G protein 100.0 4E-31 1.4E-35 177.9 16.4 157 17-182 6-171 (203)
66 3dz8_A RAS-related protein RAB 100.0 6.5E-32 2.2E-36 180.1 12.4 158 17-183 21-187 (191)
67 3cbq_A GTP-binding protein REM 100.0 8.4E-32 2.9E-36 180.1 12.9 164 15-183 19-189 (195)
68 2iwr_A Centaurin gamma 1; ANK 100.0 2.5E-32 8.6E-37 180.1 10.2 156 17-182 5-169 (178)
69 2fu5_C RAS-related protein RAB 100.0 3.5E-32 1.2E-36 180.2 10.8 160 17-182 6-171 (183)
70 2a5j_A RAS-related protein RAB 100.0 8.7E-32 3E-36 179.5 12.8 160 17-182 19-184 (191)
71 3t1o_A Gliding protein MGLA; G 100.0 1.9E-31 6.3E-36 178.6 14.3 159 16-182 11-192 (198)
72 3c5c_A RAS-like protein 12; GD 100.0 6E-32 2.1E-36 179.7 11.7 158 16-182 18-186 (187)
73 1ky3_A GTP-binding protein YPT 100.0 5.2E-32 1.8E-36 179.0 11.2 163 17-183 6-179 (182)
74 2bcg_Y Protein YP2, GTP-bindin 100.0 2.1E-31 7.3E-36 179.6 14.2 160 17-182 6-171 (206)
75 3clv_A RAB5 protein, putative; 100.0 5.8E-31 2E-35 177.1 16.2 158 17-182 5-204 (208)
76 1vg8_A RAS-related protein RAB 100.0 7.5E-32 2.6E-36 181.9 11.8 162 17-182 6-175 (207)
77 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.1E-31 3.9E-36 178.0 12.2 165 17-183 3-181 (186)
78 2fv8_A H6, RHO-related GTP-bin 100.0 2.6E-31 8.9E-36 179.3 14.1 165 17-183 23-201 (207)
79 2atx_A Small GTP binding prote 100.0 2.2E-31 7.6E-36 177.9 13.2 159 15-182 14-193 (194)
80 2j1l_A RHO-related GTP-binding 100.0 1.5E-31 5.1E-36 181.4 12.3 165 17-183 32-210 (214)
81 2o52_A RAS-related protein RAB 100.0 2.1E-31 7.2E-36 178.9 12.8 160 17-182 23-188 (200)
82 3bwd_D RAC-like GTP-binding pr 100.0 5.5E-32 1.9E-36 179.0 9.8 158 16-182 5-181 (182)
83 2gf0_A GTP-binding protein DI- 100.0 1.3E-31 4.5E-36 179.6 11.7 162 17-183 6-172 (199)
84 3cph_A RAS-related protein SEC 100.0 3.7E-31 1.3E-35 179.2 13.7 159 15-182 16-182 (213)
85 2j0v_A RAC-like GTP-binding pr 100.0 1.8E-31 6.3E-36 180.7 12.0 158 17-183 7-181 (212)
86 1m7b_A RND3/RHOE small GTP-bin 100.0 2.8E-31 9.6E-36 176.0 12.5 157 17-182 5-183 (184)
87 2q3h_A RAS homolog gene family 100.0 2.6E-31 8.9E-36 178.5 12.2 159 15-182 16-195 (201)
88 3cpj_B GTP-binding protein YPT 100.0 8.9E-31 3E-35 178.6 14.6 161 17-183 11-177 (223)
89 2yc2_C IFT27, small RAB-relate 100.0 1.4E-31 4.7E-36 180.6 10.5 161 17-182 18-192 (208)
90 4djt_A GTP-binding nuclear pro 100.0 5.6E-32 1.9E-36 183.9 8.5 162 17-183 9-176 (218)
91 2fh5_B SR-beta, signal recogni 100.0 1.1E-30 3.6E-35 177.1 14.3 163 17-180 5-214 (214)
92 1gwn_A RHO-related GTP-binding 100.0 5.8E-31 2E-35 177.3 12.5 157 17-182 26-204 (205)
93 2gco_A H9, RHO-related GTP-bin 100.0 6.4E-31 2.2E-35 176.6 12.6 163 17-181 23-199 (201)
94 2lkc_A Translation initiation 100.0 6.8E-30 2.3E-34 168.3 15.7 163 16-184 5-173 (178)
95 2zej_A Dardarin, leucine-rich 100.0 3E-31 1E-35 175.9 9.0 164 19-184 2-180 (184)
96 3gj0_A GTP-binding nuclear pro 100.0 1.1E-31 3.8E-36 182.9 7.0 161 16-183 12-176 (221)
97 2g3y_A GTP-binding protein GEM 100.0 6.8E-30 2.3E-34 172.3 15.5 160 17-182 35-203 (211)
98 3l0i_B RAS-related protein RAB 100.0 8.6E-32 2.9E-36 180.6 3.6 158 17-183 31-197 (199)
99 1svi_A GTP-binding protein YSX 100.0 3.7E-29 1.3E-33 167.2 14.4 162 14-181 18-194 (195)
100 3llu_A RAS-related GTP-binding 100.0 3.1E-30 1E-34 172.7 9.0 162 15-180 16-195 (196)
101 2qu8_A Putative nucleolar GTP- 100.0 2.5E-29 8.5E-34 172.0 13.2 163 17-183 27-206 (228)
102 2wji_A Ferrous iron transport 100.0 3.5E-28 1.2E-32 158.4 17.5 149 18-181 2-164 (165)
103 3th5_A RAS-related C3 botulinu 99.9 8.5E-32 2.9E-36 181.3 0.0 164 15-180 26-203 (204)
104 2cjw_A GTP-binding protein GEM 100.0 4.5E-29 1.5E-33 166.5 12.0 160 17-182 4-172 (192)
105 2dyk_A GTP-binding protein; GT 100.0 2.1E-28 7.2E-33 158.7 14.5 149 20-181 2-161 (161)
106 2gj8_A MNME, tRNA modification 100.0 1.8E-28 6E-33 160.9 14.1 153 18-182 3-166 (172)
107 3r7w_B Gtpase2, GTP-binding pr 100.0 2.4E-29 8.2E-34 177.5 9.6 158 21-182 1-174 (331)
108 3pqc_A Probable GTP-binding pr 100.0 2.1E-28 7.3E-33 163.3 13.4 162 15-182 19-194 (195)
109 2cxx_A Probable GTP-binding pr 100.0 1.7E-29 5.8E-34 168.1 7.2 161 20-183 2-185 (190)
110 3r7w_A Gtpase1, GTP-binding pr 100.0 3.7E-28 1.3E-32 172.7 13.6 161 18-180 2-179 (307)
111 2wkq_A NPH1-1, RAS-related C3 100.0 1.8E-28 6.2E-33 176.2 12.2 166 16-183 152-331 (332)
112 3c5h_A Glucocorticoid receptor 100.0 6.4E-29 2.2E-33 172.4 7.3 161 17-181 17-254 (255)
113 3iev_A GTP-binding protein ERA 100.0 5E-27 1.7E-31 166.9 17.0 161 16-182 7-182 (308)
114 4dhe_A Probable GTP-binding pr 100.0 5.8E-28 2E-32 164.6 11.4 164 14-182 24-211 (223)
115 1wf3_A GTP-binding protein; GT 100.0 7E-27 2.4E-31 165.3 16.8 156 18-182 6-173 (301)
116 2wjg_A FEOB, ferrous iron tran 100.0 6.7E-27 2.3E-31 155.3 14.9 151 18-183 6-170 (188)
117 2f9l_A RAB11B, member RAS onco 99.9 1.2E-26 4.1E-31 155.6 14.2 160 17-182 3-168 (199)
118 3a1s_A Iron(II) transport prot 99.9 2.4E-26 8.2E-31 159.5 16.0 150 17-181 3-166 (258)
119 2hjg_A GTP-binding protein ENG 99.9 4E-27 1.4E-31 174.7 12.3 160 18-182 174-349 (436)
120 3ohm_A Guanine nucleotide-bind 99.9 4.1E-26 1.4E-30 161.8 15.9 136 48-183 151-319 (327)
121 3dpu_A RAB family protein; roc 99.9 1.2E-26 4E-31 176.2 12.6 156 17-182 39-208 (535)
122 3i8s_A Ferrous iron transport 99.9 8.3E-27 2.8E-31 163.2 10.6 150 18-182 2-169 (274)
123 3b1v_A Ferrous iron uptake tra 99.9 5.6E-26 1.9E-30 158.5 14.4 148 18-181 2-163 (272)
124 3iby_A Ferrous iron transport 99.9 1.2E-26 4.1E-31 160.8 10.9 145 20-179 2-164 (256)
125 1oix_A RAS-related protein RAB 99.9 5.5E-26 1.9E-30 151.4 13.4 157 18-180 28-190 (191)
126 1cip_A Protein (guanine nucleo 99.9 2.7E-26 9.2E-31 165.0 12.7 135 49-183 178-345 (353)
127 3gee_A MNME, tRNA modification 99.9 8.3E-26 2.8E-30 168.3 15.3 154 17-181 231-397 (476)
128 3sjy_A Translation initiation 99.9 2.7E-25 9.1E-30 163.4 16.5 164 16-182 5-192 (403)
129 4dcu_A GTP-binding protein ENG 99.9 4.9E-26 1.7E-30 169.7 12.2 161 17-182 193-369 (456)
130 2e87_A Hypothetical protein PH 99.9 5.7E-25 1.9E-29 159.4 17.0 159 17-182 165-336 (357)
131 3k53_A Ferrous iron transport 99.9 3.9E-25 1.3E-29 154.7 15.5 150 19-182 3-166 (271)
132 4fid_A G protein alpha subunit 99.9 9.4E-26 3.2E-30 160.5 12.4 135 48-182 145-328 (340)
133 1zcb_A G alpha I/13; GTP-bindi 99.9 3.2E-25 1.1E-29 159.9 13.7 133 50-182 187-353 (362)
134 1xzp_A Probable tRNA modificat 99.9 7.2E-25 2.5E-29 163.4 15.8 151 18-181 242-404 (482)
135 1lnz_A SPO0B-associated GTP-bi 99.9 1E-25 3.5E-30 161.4 10.4 158 20-183 159-331 (342)
136 1s0u_A EIF-2-gamma, translatio 99.9 1.7E-24 5.7E-29 159.4 17.0 161 17-182 6-198 (408)
137 1nrj_B SR-beta, signal recogni 99.9 9.9E-27 3.4E-31 158.0 4.6 118 16-138 9-137 (218)
138 1mky_A Probable GTP-binding pr 99.9 1.4E-24 4.7E-29 161.2 15.6 152 20-182 2-166 (439)
139 1mky_A Probable GTP-binding pr 99.9 1.6E-24 5.5E-29 160.9 15.6 160 18-182 179-355 (439)
140 1kk1_A EIF2gamma; initiation o 99.9 1.4E-24 4.6E-29 160.0 14.3 162 16-182 7-200 (410)
141 1wb1_A Translation elongation 99.9 1.1E-24 3.8E-29 163.0 14.0 159 18-181 18-188 (482)
142 3geh_A MNME, tRNA modification 99.9 1E-24 3.5E-29 161.9 13.0 152 17-182 222-384 (462)
143 3qq5_A Small GTP-binding prote 99.9 1.3E-25 4.3E-30 164.8 7.6 155 15-181 30-195 (423)
144 2hjg_A GTP-binding protein ENG 99.9 4.9E-25 1.7E-29 163.5 10.1 151 20-182 4-165 (436)
145 2ywe_A GTP-binding protein LEP 99.9 1E-23 3.4E-28 160.3 17.0 159 17-182 4-184 (600)
146 3tr5_A RF-3, peptide chain rel 99.9 5.7E-24 2E-28 160.2 14.6 115 17-136 11-149 (528)
147 3cb4_D GTP-binding protein LEP 99.9 7.4E-24 2.5E-28 161.3 15.1 155 18-182 3-182 (599)
148 1ega_A Protein (GTP-binding pr 99.9 6.6E-24 2.3E-28 150.3 13.9 156 18-182 7-175 (301)
149 2elf_A Protein translation elo 99.9 4.3E-24 1.5E-28 154.8 13.0 146 21-181 23-179 (370)
150 3j2k_7 ERF3, eukaryotic polype 99.9 7.2E-24 2.5E-28 157.1 14.4 156 15-174 13-217 (439)
151 1d2e_A Elongation factor TU (E 99.9 4.7E-24 1.6E-28 156.5 13.0 160 18-182 2-195 (397)
152 3p26_A Elongation factor 1 alp 99.9 1.2E-23 3.9E-28 157.9 15.0 154 16-171 30-227 (483)
153 1azs_C GS-alpha; complex (lyas 99.9 1.9E-23 6.6E-28 151.8 15.3 132 51-182 204-385 (402)
154 1zun_B Sulfate adenylate trans 99.9 2.6E-23 8.7E-28 154.2 16.3 162 7-172 12-214 (434)
155 2xtz_A Guanine nucleotide-bind 99.9 1.6E-24 5.6E-29 155.7 9.4 121 62-182 181-345 (354)
156 3izy_P Translation initiation 99.9 9.6E-26 3.3E-30 169.4 2.9 160 17-181 2-167 (537)
157 2c78_A Elongation factor TU-A; 99.9 8.9E-24 3.1E-28 155.5 13.2 161 16-181 8-211 (405)
158 2ged_A SR-beta, signal recogni 99.9 3.5E-25 1.2E-29 147.6 5.2 126 16-146 45-181 (193)
159 2xtp_A GTPase IMAP family memb 99.9 8.8E-24 3E-28 147.1 12.2 161 16-182 19-208 (260)
160 2aka_B Dynamin-1; fusion prote 99.9 2.9E-23 9.9E-28 147.2 13.5 172 3-179 7-250 (299)
161 1jny_A EF-1-alpha, elongation 99.9 3.1E-24 1.1E-28 159.1 8.4 152 17-172 4-203 (435)
162 2qtf_A Protein HFLX, GTP-bindi 99.9 3.1E-23 1.1E-27 149.9 13.1 157 19-182 178-354 (364)
163 4dcu_A GTP-binding protein ENG 99.9 6.5E-24 2.2E-28 158.3 9.6 153 18-182 22-185 (456)
164 3t5d_A Septin-7; GTP-binding p 99.9 1.7E-23 5.7E-28 146.7 10.2 158 18-181 7-203 (274)
165 1g7s_A Translation initiation 99.9 3.7E-23 1.3E-27 157.6 12.9 159 18-181 4-217 (594)
166 3lxw_A GTPase IMAP family memb 99.9 4.5E-23 1.5E-27 142.3 11.8 166 16-183 18-209 (247)
167 3lxx_A GTPase IMAP family memb 99.9 2.1E-22 7.2E-27 138.5 14.1 158 15-182 25-214 (239)
168 1zo1_I IF2, translation initia 99.9 9.9E-25 3.4E-29 162.7 2.3 157 17-179 2-164 (501)
169 2h5e_A Peptide chain release f 99.9 3.1E-22 1.1E-26 151.0 15.3 115 17-136 11-149 (529)
170 3izq_1 HBS1P, elongation facto 99.9 1.1E-23 3.9E-28 161.2 7.5 153 17-172 165-362 (611)
171 3avx_A Elongation factor TS, e 99.9 2.7E-22 9.2E-27 159.9 13.4 160 17-181 294-485 (1289)
172 1r5b_A Eukaryotic peptide chai 99.9 3.7E-23 1.3E-27 154.3 8.2 155 15-173 39-243 (467)
173 1f60_A Elongation factor EEF1A 99.9 8.3E-23 2.8E-27 152.2 8.9 151 17-171 5-201 (458)
174 1dar_A EF-G, elongation factor 99.9 2.7E-21 9.1E-26 150.2 16.8 115 17-136 10-144 (691)
175 3mca_A HBS1, elongation factor 99.9 7.2E-24 2.4E-28 161.9 1.8 161 16-180 174-395 (592)
176 1jwy_B Dynamin A GTPase domain 99.9 1.8E-21 6.1E-26 139.0 14.0 176 3-182 6-262 (315)
177 2j69_A Bacterial dynamin-like 99.9 4.3E-21 1.5E-25 149.2 16.3 163 16-182 66-325 (695)
178 1pui_A ENGB, probable GTP-bind 99.9 2.2E-21 7.4E-26 130.9 12.7 160 14-182 21-199 (210)
179 2qag_A Septin-2, protein NEDD5 99.9 2.1E-22 7.2E-27 145.8 6.7 158 17-181 35-232 (361)
180 2dy1_A Elongation factor G; tr 99.9 1.6E-20 5.6E-25 145.3 17.5 115 15-134 5-139 (665)
181 2xex_A Elongation factor G; GT 99.9 2.3E-20 7.8E-25 145.1 16.8 116 16-136 7-142 (693)
182 2rdo_7 EF-G, elongation factor 99.9 5E-20 1.7E-24 143.3 18.3 115 17-136 8-149 (704)
183 3def_A T7I23.11 protein; chlor 99.9 1.5E-20 5E-25 130.9 13.0 117 18-135 35-165 (262)
184 3vqt_A RF-3, peptide chain rel 99.8 9.3E-20 3.2E-24 138.1 15.6 115 17-136 29-167 (548)
185 2x2e_A Dynamin-1; nitration, h 99.8 2.1E-20 7E-25 135.3 10.0 170 3-178 12-254 (353)
186 1h65_A Chloroplast outer envel 99.8 5.8E-19 2E-23 123.4 16.0 119 17-136 37-169 (270)
187 1udx_A The GTP-binding protein 99.8 1.6E-19 5.5E-24 132.2 12.6 158 20-183 158-326 (416)
188 3p32_A Probable GTPase RV1496/ 99.8 1.6E-19 5.5E-24 130.7 9.0 109 62-182 170-284 (355)
189 3t34_A Dynamin-related protein 99.8 2.5E-19 8.6E-24 130.0 9.5 150 19-175 34-254 (360)
190 1n0u_A EF-2, elongation factor 99.8 3.5E-19 1.2E-23 141.0 10.1 114 17-135 17-164 (842)
191 3l82_B F-box only protein 4; T 99.8 1.7E-18 5.8E-23 113.9 9.5 111 72-184 110-225 (227)
192 2wsm_A Hydrogenase expression/ 99.8 9E-19 3.1E-23 119.0 8.2 151 17-182 28-214 (221)
193 2qnr_A Septin-2, protein NEDD5 99.8 4E-19 1.4E-23 125.7 6.0 159 17-182 16-214 (301)
194 2qpt_A EH domain-containing pr 99.8 2.1E-18 7.3E-23 130.8 10.2 124 18-145 64-242 (550)
195 2www_A Methylmalonic aciduria 99.8 8.3E-18 2.8E-22 121.3 11.6 108 62-181 165-278 (349)
196 3j25_A Tetracycline resistance 99.8 7.9E-19 2.7E-23 135.4 6.6 158 20-182 3-239 (638)
197 1u0l_A Probable GTPase ENGC; p 99.8 5.8E-19 2E-23 125.0 5.0 133 34-178 32-169 (301)
198 1wxq_A GTP-binding protein; st 99.8 3.7E-19 1.3E-23 130.0 4.0 81 20-100 1-114 (397)
199 2qag_C Septin-7; cell cycle, c 99.7 2.1E-18 7.2E-23 126.5 6.8 158 18-181 30-226 (418)
200 4fn5_A EF-G 1, elongation fact 99.7 1.4E-16 4.8E-21 124.4 16.9 116 15-135 9-151 (709)
201 3zvr_A Dynamin-1; hydrolase, D 99.7 1.4E-16 4.7E-21 123.8 15.5 170 4-178 33-274 (772)
202 1yrb_A ATP(GTP)binding protein 99.7 1.5E-17 5E-22 115.8 7.5 118 64-182 109-257 (262)
203 2p67_A LAO/AO transport system 99.7 5.5E-18 1.9E-22 122.0 4.5 109 61-181 146-260 (341)
204 3l2o_B F-box only protein 4; s 99.7 3.3E-17 1.1E-21 112.8 7.5 112 71-184 194-310 (312)
205 2hf9_A Probable hydrogenase ni 99.7 1.8E-16 6.3E-21 107.9 10.8 153 17-184 36-226 (226)
206 1jal_A YCHF protein; nucleotid 99.7 1.4E-15 4.8E-20 109.3 14.4 80 20-99 3-108 (363)
207 4a9a_A Ribosome-interacting GT 99.6 2E-15 6.9E-20 109.1 11.7 113 19-133 72-194 (376)
208 2qm8_A GTPase/ATPase; G protei 99.6 7.5E-15 2.6E-19 105.4 10.6 108 62-181 146-260 (337)
209 2dby_A GTP-binding protein; GD 99.6 2.7E-14 9.4E-19 103.2 12.2 80 20-99 2-111 (368)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 3.7E-13 1.3E-17 97.8 7.5 86 17-102 20-131 (396)
211 2yv5_A YJEQ protein; hydrolase 99.3 1.4E-12 4.9E-17 92.3 6.5 96 74-178 66-165 (302)
212 2j37_W Signal recognition part 99.3 1.1E-11 3.8E-16 92.9 7.5 154 18-179 100-310 (504)
213 2qag_B Septin-6, protein NEDD5 99.2 7.5E-11 2.6E-15 86.5 8.7 138 19-163 42-217 (427)
214 1tq4_A IIGP1, interferon-induc 99.2 6.5E-10 2.2E-14 81.5 13.6 159 17-182 67-253 (413)
215 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.4E-10 4.8E-15 84.5 9.9 83 17-99 18-127 (392)
216 3ec1_A YQEH GTPase; atnos1, at 99.2 6.7E-12 2.3E-16 91.2 2.5 113 19-139 162-292 (369)
217 3sop_A Neuronal-specific septi 99.1 3.3E-10 1.1E-14 78.8 9.9 119 19-142 2-161 (270)
218 3h2y_A GTPase family protein; 99.1 2.7E-11 9.3E-16 87.9 3.5 117 19-143 160-295 (368)
219 1puj_A YLQF, conserved hypothe 99.1 3.8E-10 1.3E-14 79.0 7.2 102 68-181 3-105 (282)
220 3h2y_A GTPase family protein; 99.1 7.4E-11 2.5E-15 85.6 3.4 102 73-181 55-159 (368)
221 3ec1_A YQEH GTPase; atnos1, at 99.0 2.5E-10 8.7E-15 82.9 4.4 102 73-181 57-161 (369)
222 1puj_A YLQF, conserved hypothe 98.9 5.6E-09 1.9E-13 73.1 6.7 56 17-75 118-176 (282)
223 2v3c_C SRP54, signal recogniti 98.8 5.9E-10 2E-14 82.4 0.8 110 62-179 179-308 (432)
224 3dm5_A SRP54, signal recogniti 98.8 5.6E-09 1.9E-13 77.0 5.9 111 19-136 100-254 (443)
225 3cnl_A YLQF, putative uncharac 98.8 5.7E-09 1.9E-13 72.3 4.0 55 20-76 100-156 (262)
226 3szr_A Interferon-induced GTP- 98.7 9.2E-08 3.1E-12 73.8 10.0 23 21-43 47-69 (608)
227 1f5n_A Interferon-induced guan 98.7 4.8E-08 1.6E-12 74.7 8.0 69 6-75 26-102 (592)
228 3cnl_A YLQF, putative uncharac 98.5 3.7E-08 1.3E-12 68.2 2.1 93 71-178 4-97 (262)
229 3kl4_A SRP54, signal recogniti 98.4 2.1E-07 7.1E-12 68.7 4.8 67 62-135 178-252 (433)
230 1j8m_F SRP54, signal recogniti 98.3 4.1E-07 1.4E-11 64.1 3.2 66 62-135 179-253 (297)
231 1t9h_A YLOQ, probable GTPase E 98.3 3.4E-07 1.2E-11 64.7 2.7 85 82-175 81-170 (307)
232 2rcn_A Probable GTPase ENGC; Y 98.2 6E-06 2E-10 59.5 7.8 84 84-176 127-213 (358)
233 3q5d_A Atlastin-1; G protein, 98.1 2.3E-06 7.9E-11 63.4 4.3 60 17-76 65-152 (447)
234 3e70_C DPA, signal recognition 98.1 1.1E-06 3.7E-11 62.8 2.3 23 18-40 128-150 (328)
235 1bif_A 6-phosphofructo-2-kinas 98.1 4.8E-07 1.6E-11 67.9 0.2 94 16-111 36-143 (469)
236 3c8u_A Fructokinase; YP_612366 98.0 4.8E-06 1.6E-10 55.6 4.2 37 4-41 8-44 (208)
237 2yhs_A FTSY, cell division pro 98.0 1.9E-06 6.4E-11 64.5 2.1 22 19-40 293-314 (503)
238 1rj9_A FTSY, signal recognitio 98.0 4.9E-06 1.7E-10 58.8 4.1 22 19-40 102-123 (304)
239 2xxa_A Signal recognition part 98.0 1.4E-05 5E-10 59.2 6.4 67 62-136 182-255 (433)
240 3ec2_A DNA replication protein 97.9 1.1E-05 3.9E-10 52.4 4.4 37 5-41 24-60 (180)
241 1ye8_A Protein THEP1, hypothet 97.9 6.6E-06 2.2E-10 53.6 3.1 22 20-41 1-22 (178)
242 1rz3_A Hypothetical protein rb 97.9 1.5E-05 5.3E-10 52.9 4.9 39 3-41 6-44 (201)
243 2ffh_A Protein (FFH); SRP54, s 97.8 1.4E-05 4.7E-10 59.0 3.5 66 62-135 179-251 (425)
244 1kgd_A CASK, peripheral plasma 97.8 1.4E-05 4.6E-10 52.2 3.0 22 21-42 7-28 (180)
245 3tr0_A Guanylate kinase, GMP k 97.8 1.9E-05 6.5E-10 52.4 3.4 25 18-42 6-30 (205)
246 1lvg_A Guanylate kinase, GMP k 97.7 1.4E-05 4.9E-10 52.9 2.7 22 20-41 5-26 (198)
247 4dzz_A Plasmid partitioning pr 97.7 0.0002 6.9E-09 47.4 8.2 70 62-135 74-144 (206)
248 4gp7_A Metallophosphoesterase; 97.7 1.6E-05 5.6E-10 51.4 2.7 22 19-40 9-30 (171)
249 1odf_A YGR205W, hypothetical 3 97.7 5.2E-05 1.8E-09 53.2 5.2 25 16-40 28-52 (290)
250 2bbw_A Adenylate kinase 4, AK4 97.7 2.6E-05 8.8E-10 53.4 3.3 23 18-40 26-48 (246)
251 3a00_A Guanylate kinase, GMP k 97.7 2.3E-05 7.7E-10 51.4 2.9 20 22-41 4-23 (186)
252 1zp6_A Hypothetical protein AT 97.7 3E-05 1E-09 50.8 3.4 25 18-42 8-32 (191)
253 3lnc_A Guanylate kinase, GMP k 97.7 1.5E-05 5.2E-10 54.0 1.9 27 14-40 22-48 (231)
254 1znw_A Guanylate kinase, GMP k 97.7 2.4E-05 8.2E-10 52.2 2.8 24 19-42 20-43 (207)
255 1s96_A Guanylate kinase, GMP k 97.6 2.8E-05 9.4E-10 52.4 2.9 24 19-42 16-39 (219)
256 1z6g_A Guanylate kinase; struc 97.6 2.5E-05 8.5E-10 52.6 2.5 25 18-42 22-46 (218)
257 3tif_A Uncharacterized ABC tra 97.6 3.2E-05 1.1E-09 52.7 2.9 22 20-41 32-53 (235)
258 3ney_A 55 kDa erythrocyte memb 97.6 3.7E-05 1.3E-09 50.8 3.0 24 19-42 19-42 (197)
259 3asz_A Uridine kinase; cytidin 97.6 4.2E-05 1.4E-09 51.0 3.4 24 18-41 5-28 (211)
260 3tau_A Guanylate kinase, GMP k 97.6 4E-05 1.4E-09 51.1 3.1 24 19-42 8-31 (208)
261 2pcj_A ABC transporter, lipopr 97.6 3.9E-05 1.3E-09 51.9 3.0 22 21-42 32-53 (224)
262 1htw_A HI0065; nucleotide-bind 97.6 5.3E-05 1.8E-09 48.3 3.4 27 17-43 31-57 (158)
263 1ex7_A Guanylate kinase; subst 97.6 4.4E-05 1.5E-09 50.0 3.0 21 22-42 4-24 (186)
264 1kag_A SKI, shikimate kinase I 97.6 4.3E-05 1.5E-09 49.2 3.0 22 20-41 5-26 (173)
265 3vaa_A Shikimate kinase, SK; s 97.5 5.3E-05 1.8E-09 50.1 3.3 24 17-40 23-46 (199)
266 3lw7_A Adenylate kinase relate 97.5 5.4E-05 1.9E-09 48.7 3.2 20 20-39 2-21 (179)
267 2onk_A Molybdate/tungstate ABC 97.5 4.9E-05 1.7E-09 51.9 3.1 23 20-42 25-47 (240)
268 1cke_A CK, MSSA, protein (cyti 97.5 5.4E-05 1.8E-09 51.0 3.2 22 19-40 5-26 (227)
269 1sgw_A Putative ABC transporte 97.5 5.1E-05 1.7E-09 50.9 3.0 22 21-42 37-58 (214)
270 2jeo_A Uridine-cytidine kinase 97.5 6.1E-05 2.1E-09 51.5 3.4 27 15-41 21-47 (245)
271 3gfo_A Cobalt import ATP-bindi 97.5 5E-05 1.7E-09 52.9 3.0 23 20-42 35-57 (275)
272 3cm0_A Adenylate kinase; ATP-b 97.5 6.9E-05 2.4E-09 48.9 3.5 23 18-40 3-25 (186)
273 1y63_A LMAJ004144AAA protein; 97.5 5.9E-05 2E-09 49.3 3.2 26 16-41 7-32 (184)
274 3fb4_A Adenylate kinase; psych 97.5 5.6E-05 1.9E-09 50.6 3.1 21 20-40 1-21 (216)
275 1b0u_A Histidine permease; ABC 97.5 5.1E-05 1.8E-09 52.5 3.0 23 20-42 33-55 (262)
276 2qor_A Guanylate kinase; phosp 97.5 5.6E-05 1.9E-09 50.2 3.1 24 18-41 11-34 (204)
277 2j41_A Guanylate kinase; GMP, 97.5 5.4E-05 1.9E-09 50.2 3.0 25 19-43 6-30 (207)
278 2bdt_A BH3686; alpha-beta prot 97.5 5.5E-05 1.9E-09 49.5 3.0 21 21-41 4-24 (189)
279 2cbz_A Multidrug resistance-as 97.5 5.9E-05 2E-09 51.4 3.2 22 20-41 32-53 (237)
280 4g1u_C Hemin import ATP-bindin 97.5 5.5E-05 1.9E-09 52.4 3.0 23 20-42 38-60 (266)
281 3kb2_A SPBC2 prophage-derived 97.5 5.4E-05 1.8E-09 48.6 2.8 20 21-40 3-22 (173)
282 3end_A Light-independent proto 97.5 0.00053 1.8E-08 48.4 8.1 82 63-148 156-238 (307)
283 1ak2_A Adenylate kinase isoenz 97.5 6.6E-05 2.2E-09 51.0 3.3 32 9-40 6-37 (233)
284 3dl0_A Adenylate kinase; phosp 97.5 6.2E-05 2.1E-09 50.4 3.1 21 20-40 1-21 (216)
285 1g6h_A High-affinity branched- 97.5 5.6E-05 1.9E-09 52.2 2.9 23 20-42 34-56 (257)
286 1ly1_A Polynucleotide kinase; 97.5 7.3E-05 2.5E-09 48.4 3.3 22 20-41 3-24 (181)
287 2ff7_A Alpha-hemolysin translo 97.5 6.6E-05 2.3E-09 51.5 3.2 23 20-42 36-58 (247)
288 1mv5_A LMRA, multidrug resista 97.5 6.8E-05 2.3E-09 51.3 3.2 24 19-42 28-51 (243)
289 4eun_A Thermoresistant glucoki 97.5 6.4E-05 2.2E-09 49.8 3.0 23 19-41 29-51 (200)
290 2pze_A Cystic fibrosis transme 97.5 7.1E-05 2.4E-09 50.7 3.2 23 20-42 35-57 (229)
291 3aez_A Pantothenate kinase; tr 97.5 0.00017 5.9E-09 51.2 5.2 26 16-41 87-112 (312)
292 2olj_A Amino acid ABC transpor 97.5 6.4E-05 2.2E-09 52.0 3.0 23 20-42 51-73 (263)
293 1ji0_A ABC transporter; ATP bi 97.5 6.5E-05 2.2E-09 51.3 2.9 23 20-42 33-55 (240)
294 2rhm_A Putative kinase; P-loop 97.5 8.2E-05 2.8E-09 48.8 3.3 23 18-40 4-26 (193)
295 1vpl_A ABC transporter, ATP-bi 97.5 6.7E-05 2.3E-09 51.7 3.0 23 20-42 42-64 (256)
296 2rcn_A Probable GTPase ENGC; Y 97.5 7.6E-05 2.6E-09 53.9 3.3 25 20-44 216-240 (358)
297 3tlx_A Adenylate kinase 2; str 97.5 9.1E-05 3.1E-09 50.6 3.6 25 16-40 26-50 (243)
298 3tqc_A Pantothenate kinase; bi 97.5 0.00012 4.1E-09 52.1 4.3 23 18-40 91-113 (321)
299 2qi9_C Vitamin B12 import ATP- 97.5 7E-05 2.4E-09 51.4 3.0 23 20-42 27-49 (249)
300 2if2_A Dephospho-COA kinase; a 97.5 7.6E-05 2.6E-09 49.5 3.1 22 20-41 2-23 (204)
301 3b85_A Phosphate starvation-in 97.5 6E-05 2E-09 50.3 2.6 23 20-42 23-45 (208)
302 2cdn_A Adenylate kinase; phosp 97.5 8.3E-05 2.8E-09 49.2 3.3 25 16-40 17-41 (201)
303 2d2e_A SUFC protein; ABC-ATPas 97.5 7.2E-05 2.5E-09 51.4 3.0 23 20-42 30-52 (250)
304 1aky_A Adenylate kinase; ATP:A 97.5 8.1E-05 2.8E-09 50.0 3.2 23 18-40 3-25 (220)
305 2i3b_A HCR-ntpase, human cance 97.4 6.4E-05 2.2E-09 49.4 2.6 21 21-41 3-23 (189)
306 2zu0_C Probable ATP-dependent 97.4 7.8E-05 2.7E-09 51.7 3.1 23 20-42 47-69 (267)
307 2eyu_A Twitching motility prot 97.4 7.6E-05 2.6E-09 51.6 3.0 25 17-41 23-47 (261)
308 2ghi_A Transport protein; mult 97.4 8.1E-05 2.8E-09 51.4 3.2 23 20-42 47-69 (260)
309 2v9p_A Replication protein E1; 97.4 8.4E-05 2.9E-09 52.5 3.3 27 15-41 122-148 (305)
310 2ixe_A Antigen peptide transpo 97.4 7.6E-05 2.6E-09 51.9 2.9 23 20-42 46-68 (271)
311 2ihy_A ABC transporter, ATP-bi 97.4 8.8E-05 3E-09 51.8 3.2 23 20-42 48-70 (279)
312 1knq_A Gluconate kinase; ALFA/ 97.4 8.4E-05 2.9E-09 48.0 2.9 22 20-41 9-30 (175)
313 3sr0_A Adenylate kinase; phosp 97.4 9.6E-05 3.3E-09 49.2 3.2 21 20-40 1-21 (206)
314 2v54_A DTMP kinase, thymidylat 97.4 0.0001 3.5E-09 48.8 3.3 24 18-41 3-26 (204)
315 3t61_A Gluconokinase; PSI-biol 97.4 8.5E-05 2.9E-09 49.2 2.9 23 19-41 18-40 (202)
316 1qhx_A CPT, protein (chloramph 97.4 8.9E-05 3E-09 48.0 2.9 22 20-41 4-25 (178)
317 2nq2_C Hypothetical ABC transp 97.4 8.5E-05 2.9E-09 51.1 2.9 22 21-42 33-54 (253)
318 2ehv_A Hypothetical protein PH 97.4 8.8E-05 3E-09 50.6 3.0 21 20-40 31-51 (251)
319 1jjv_A Dephospho-COA kinase; P 97.4 0.0001 3.6E-09 48.9 3.3 22 20-41 3-24 (206)
320 3jvv_A Twitching mobility prot 97.4 0.00013 4.6E-09 52.7 4.0 26 16-41 120-145 (356)
321 2yz2_A Putative ABC transporte 97.4 8.5E-05 2.9E-09 51.5 2.9 23 20-42 34-56 (266)
322 3uie_A Adenylyl-sulfate kinase 97.4 0.00013 4.4E-09 48.3 3.7 24 17-40 23-46 (200)
323 2jaq_A Deoxyguanosine kinase; 97.4 0.0001 3.5E-09 48.7 3.2 21 21-41 2-22 (205)
324 1jbk_A CLPB protein; beta barr 97.4 0.00023 8E-09 46.2 4.9 24 18-41 42-65 (195)
325 1uf9_A TT1252 protein; P-loop, 97.4 0.00012 4E-09 48.4 3.4 26 17-42 6-31 (203)
326 1kht_A Adenylate kinase; phosp 97.4 0.00011 3.8E-09 48.0 3.2 21 20-40 4-24 (192)
327 1ukz_A Uridylate kinase; trans 97.4 0.0001 3.6E-09 48.7 3.1 25 16-40 12-36 (203)
328 1nks_A Adenylate kinase; therm 97.4 0.00012 4.1E-09 47.9 3.3 20 21-40 3-22 (194)
329 1e4v_A Adenylate kinase; trans 97.4 0.00011 3.6E-09 49.2 3.1 21 20-40 1-21 (214)
330 1vht_A Dephospho-COA kinase; s 97.4 0.00013 4.4E-09 48.9 3.5 24 18-41 3-26 (218)
331 1np6_A Molybdopterin-guanine d 97.4 0.00012 3.9E-09 47.5 3.1 22 20-41 7-28 (174)
332 1tue_A Replication protein E1; 97.4 0.00018 6.1E-09 47.7 3.9 35 4-40 45-79 (212)
333 2pjz_A Hypothetical protein ST 97.4 0.00012 4E-09 50.7 3.2 23 21-43 32-54 (263)
334 2c95_A Adenylate kinase 1; tra 97.4 0.00012 4.2E-09 48.0 3.1 24 17-40 7-30 (196)
335 2pt5_A Shikimate kinase, SK; a 97.4 0.00013 4.6E-09 46.7 3.2 22 20-41 1-22 (168)
336 1u0l_A Probable GTPase ENGC; p 97.4 0.00014 4.6E-09 51.4 3.5 24 20-43 170-193 (301)
337 4ido_A Atlastin-1; GTPase, GTP 97.3 0.00064 2.2E-08 50.4 7.1 58 18-75 66-151 (457)
338 2qt1_A Nicotinamide riboside k 97.3 0.00014 4.7E-09 48.4 3.3 24 18-41 20-43 (207)
339 1tev_A UMP-CMP kinase; ploop, 97.3 0.00014 4.8E-09 47.6 3.3 22 19-40 3-24 (196)
340 3iij_A Coilin-interacting nucl 97.3 0.0001 3.6E-09 47.8 2.6 23 18-40 10-32 (180)
341 4a74_A DNA repair and recombin 97.3 0.00012 4E-09 49.4 2.9 23 19-41 25-47 (231)
342 2plr_A DTMP kinase, probable t 97.3 0.00015 5.1E-09 48.2 3.4 23 19-41 4-26 (213)
343 1nn5_A Similar to deoxythymidy 97.3 0.00014 4.7E-09 48.5 3.2 24 17-40 7-30 (215)
344 2yv5_A YJEQ protein; hydrolase 97.3 0.00012 4.2E-09 51.7 3.0 21 20-40 166-186 (302)
345 2wwf_A Thymidilate kinase, put 97.3 0.00014 4.9E-09 48.4 3.2 23 18-40 9-31 (212)
346 1zd8_A GTP:AMP phosphotransfer 97.3 0.00014 4.7E-09 49.1 3.1 23 18-40 6-28 (227)
347 3trf_A Shikimate kinase, SK; a 97.3 0.00015 5E-09 47.3 3.1 22 19-40 5-26 (185)
348 2w58_A DNAI, primosome compone 97.3 0.00032 1.1E-08 46.3 4.8 22 20-41 55-76 (202)
349 3fvq_A Fe(3+) IONS import ATP- 97.3 0.00013 4.5E-09 52.6 3.0 22 21-42 32-53 (359)
350 2bbs_A Cystic fibrosis transme 97.3 0.00014 4.9E-09 51.0 3.1 23 20-42 65-87 (290)
351 1uj2_A Uridine-cytidine kinase 97.3 0.00016 5.5E-09 49.7 3.3 25 17-41 20-44 (252)
352 3nh6_A ATP-binding cassette SU 97.3 8.4E-05 2.9E-09 52.5 1.8 23 19-41 80-102 (306)
353 1t9h_A YLOQ, probable GTPase E 97.3 4.1E-05 1.4E-09 54.1 0.2 23 20-42 174-196 (307)
354 1via_A Shikimate kinase; struc 97.3 0.00014 4.7E-09 47.0 2.6 20 21-40 6-25 (175)
355 2f1r_A Molybdopterin-guanine d 97.3 6.7E-05 2.3E-09 48.5 1.1 20 21-40 4-23 (171)
356 3be4_A Adenylate kinase; malar 97.3 0.0002 6.7E-09 48.0 3.4 23 18-40 4-26 (217)
357 1lw7_A Transcriptional regulat 97.3 0.00012 3.9E-09 53.2 2.4 24 19-42 170-193 (365)
358 3tui_C Methionine import ATP-b 97.3 0.00016 5.4E-09 52.3 3.1 23 20-42 55-77 (366)
359 4e22_A Cytidylate kinase; P-lo 97.3 0.00018 6.2E-09 49.4 3.2 23 18-40 26-48 (252)
360 1z47_A CYSA, putative ABC-tran 97.3 0.00016 5.5E-09 52.1 3.0 23 20-42 42-64 (355)
361 3r20_A Cytidylate kinase; stru 97.3 0.00019 6.4E-09 48.7 3.2 24 17-40 7-30 (233)
362 3rlf_A Maltose/maltodextrin im 97.2 0.00017 5.9E-09 52.4 3.1 22 21-42 31-52 (381)
363 2p65_A Hypothetical protein PF 97.2 0.00029 1E-08 45.6 4.0 25 17-41 41-65 (187)
364 2xb4_A Adenylate kinase; ATP-b 97.2 0.0002 6.7E-09 48.3 3.2 21 20-40 1-21 (223)
365 2yyz_A Sugar ABC transporter, 97.2 0.00017 5.8E-09 52.1 3.0 22 21-42 31-52 (359)
366 2bwj_A Adenylate kinase 5; pho 97.2 0.00016 5.5E-09 47.6 2.7 23 18-40 11-33 (199)
367 1gvn_B Zeta; postsegregational 97.2 0.0002 7E-09 50.2 3.3 24 18-41 32-55 (287)
368 2it1_A 362AA long hypothetical 97.2 0.00018 6.1E-09 52.1 3.1 23 20-42 30-52 (362)
369 2yvu_A Probable adenylyl-sulfa 97.2 0.00022 7.6E-09 46.5 3.3 23 18-40 12-34 (186)
370 2kjq_A DNAA-related protein; s 97.2 0.00014 4.8E-09 45.8 2.3 23 19-41 36-58 (149)
371 1zak_A Adenylate kinase; ATP:A 97.2 0.00016 5.4E-09 48.7 2.6 23 18-40 4-26 (222)
372 2pbr_A DTMP kinase, thymidylat 97.2 0.00022 7.4E-09 46.7 3.2 21 21-41 2-22 (195)
373 1p9r_A General secretion pathw 97.2 0.00039 1.3E-08 51.3 4.8 25 17-41 165-189 (418)
374 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00023 7.8E-09 49.2 3.4 23 19-41 4-26 (260)
375 1sq5_A Pantothenate kinase; P- 97.2 0.00024 8.3E-09 50.3 3.5 25 17-41 78-102 (308)
376 2x8a_A Nuclear valosin-contain 97.2 0.00036 1.2E-08 48.6 4.3 20 22-41 47-66 (274)
377 1g29_1 MALK, maltose transport 97.2 0.0002 6.7E-09 52.1 3.0 22 21-42 31-52 (372)
378 1v43_A Sugar-binding transport 97.2 0.0002 6.9E-09 52.0 3.1 23 20-42 38-60 (372)
379 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00019 6.5E-09 51.4 2.9 25 18-42 170-194 (330)
380 2gza_A Type IV secretion syste 97.2 0.00016 5.6E-09 52.4 2.5 28 15-42 171-198 (361)
381 2grj_A Dephospho-COA kinase; T 97.2 0.00029 1E-08 46.4 3.4 24 18-41 11-34 (192)
382 2ewv_A Twitching motility prot 97.2 0.00031 1.1E-08 51.1 3.9 25 17-41 134-158 (372)
383 2ze6_A Isopentenyl transferase 97.2 0.00022 7.4E-09 49.1 2.9 20 21-40 3-22 (253)
384 2z0h_A DTMP kinase, thymidylat 97.2 0.00025 8.6E-09 46.5 3.1 21 21-41 2-22 (197)
385 1xjc_A MOBB protein homolog; s 97.2 0.0003 1E-08 45.3 3.3 22 20-41 5-26 (169)
386 1e6c_A Shikimate kinase; phosp 97.1 0.00026 8.8E-09 45.5 2.9 20 21-40 4-23 (173)
387 2p5t_B PEZT; postsegregational 97.1 0.00018 6.3E-09 49.4 2.3 24 18-41 31-54 (253)
388 2pez_A Bifunctional 3'-phospho 97.1 0.00033 1.1E-08 45.4 3.4 23 19-41 5-27 (179)
389 3bos_A Putative DNA replicatio 97.1 0.00057 2E-08 46.2 4.7 24 18-41 51-74 (242)
390 4b4t_L 26S protease subunit RP 97.1 0.0063 2.2E-07 45.2 10.4 27 14-40 210-236 (437)
391 2vli_A Antibiotic resistance p 97.1 0.00019 6.5E-09 46.6 2.2 22 19-40 5-26 (183)
392 2iyv_A Shikimate kinase, SK; t 97.1 0.00027 9.2E-09 46.0 2.9 20 21-40 4-23 (184)
393 3gd7_A Fusion complex of cysti 97.1 0.00026 8.8E-09 51.8 3.0 22 20-41 48-69 (390)
394 1ixz_A ATP-dependent metallopr 97.1 0.00028 9.7E-09 48.4 3.0 21 21-41 51-71 (254)
395 3kta_A Chromosome segregation 97.1 0.0003 1E-08 45.7 3.0 21 21-41 28-48 (182)
396 2f6r_A COA synthase, bifunctio 97.1 0.00034 1.2E-08 48.9 3.4 23 18-40 74-96 (281)
397 3d31_A Sulfate/molybdate ABC t 97.1 0.00016 5.5E-09 52.0 1.8 23 20-42 27-49 (348)
398 1qf9_A UMP/CMP kinase, protein 97.1 0.00034 1.2E-08 45.7 3.2 21 20-40 7-27 (194)
399 2oap_1 GSPE-2, type II secreti 97.1 0.00022 7.6E-09 54.0 2.5 25 18-42 259-283 (511)
400 3n70_A Transport activator; si 97.1 0.00063 2.2E-08 42.5 4.2 36 6-42 12-47 (145)
401 2vp4_A Deoxynucleoside kinase; 97.1 0.00027 9.3E-09 47.8 2.6 26 17-42 18-43 (230)
402 1zuh_A Shikimate kinase; alpha 97.1 0.00037 1.3E-08 44.6 3.2 20 21-40 9-28 (168)
403 1gtv_A TMK, thymidylate kinase 97.1 0.00011 3.6E-09 49.1 0.6 20 21-40 2-21 (214)
404 2qgz_A Helicase loader, putati 97.1 0.00075 2.6E-08 47.8 4.8 36 6-41 139-174 (308)
405 1m7g_A Adenylylsulfate kinase; 97.1 0.00068 2.3E-08 45.2 4.4 24 17-40 23-46 (211)
406 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.00034 1.2E-08 47.1 3.0 21 20-40 24-44 (235)
407 2chg_A Replication factor C sm 97.1 0.00075 2.6E-08 44.8 4.6 21 21-41 40-60 (226)
408 3umf_A Adenylate kinase; rossm 97.1 0.00047 1.6E-08 46.2 3.5 21 20-40 29-50 (217)
409 3b9q_A Chloroplast SRP recepto 97.1 0.00041 1.4E-08 49.0 3.4 22 19-40 100-121 (302)
410 1d2n_A N-ethylmaleimide-sensit 97.1 0.00078 2.7E-08 46.7 4.8 26 16-41 61-86 (272)
411 2npi_A Protein CLP1; CLP1-PCF1 97.0 0.0003 1E-08 52.6 2.7 27 15-41 134-160 (460)
412 1oxx_K GLCV, glucose, ABC tran 97.0 0.00016 5.5E-09 52.2 1.0 23 20-42 32-54 (353)
413 3cwq_A Para family chromosome 97.0 0.003 1E-07 42.0 7.1 68 62-135 66-134 (209)
414 3k9g_A PF-32 protein; ssgcid, 97.0 0.014 4.7E-07 40.2 10.7 66 62-132 143-208 (267)
415 1iy2_A ATP-dependent metallopr 97.0 0.00042 1.4E-08 48.3 3.0 21 21-41 75-95 (278)
416 3h4m_A Proteasome-activating n 97.0 0.00066 2.2E-08 47.3 4.0 25 17-41 49-73 (285)
417 2ga8_A Hypothetical 39.9 kDa p 97.0 0.00093 3.2E-08 48.1 4.8 37 4-40 8-45 (359)
418 3gmt_A Adenylate kinase; ssgci 97.0 0.0005 1.7E-08 46.4 3.2 23 18-40 7-29 (230)
419 1in4_A RUVB, holliday junction 97.0 0.00038 1.3E-08 49.9 2.8 22 20-41 52-73 (334)
420 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00045 1.5E-08 43.5 2.8 19 22-40 26-44 (149)
421 3cf0_A Transitional endoplasmi 97.0 0.00069 2.4E-08 47.8 4.0 25 17-41 47-71 (301)
422 3t15_A Ribulose bisphosphate c 97.0 0.00045 1.6E-08 48.5 3.0 24 18-41 35-58 (293)
423 4eaq_A DTMP kinase, thymidylat 97.0 0.00059 2E-08 46.2 3.5 24 18-41 25-48 (229)
424 1fnn_A CDC6P, cell division co 97.0 0.00068 2.3E-08 49.3 3.9 21 21-41 46-66 (389)
425 3te6_A Regulatory protein SIR3 96.9 0.0031 1.1E-07 44.8 7.0 26 16-41 42-67 (318)
426 2obl_A ESCN; ATPase, hydrolase 96.9 0.00051 1.7E-08 49.5 3.0 29 15-43 67-95 (347)
427 1cr0_A DNA primase/helicase; R 96.9 0.0005 1.7E-08 48.3 2.9 22 20-41 36-57 (296)
428 2cvh_A DNA repair and recombin 96.9 0.00056 1.9E-08 45.7 3.0 23 19-41 20-42 (220)
429 1lv7_A FTSH; alpha/beta domain 96.9 0.00055 1.9E-08 47.0 3.0 23 19-41 45-67 (257)
430 1njg_A DNA polymerase III subu 96.9 0.0014 4.7E-08 44.1 5.0 22 20-41 46-67 (250)
431 2og2_A Putative signal recogni 96.9 0.00063 2.1E-08 49.2 3.3 22 19-40 157-178 (359)
432 1nij_A Hypothetical protein YJ 96.9 0.00058 2E-08 48.6 3.1 22 21-42 6-27 (318)
433 3nwj_A ATSK2; P loop, shikimat 96.9 0.00057 1.9E-08 46.9 2.9 22 19-40 48-69 (250)
434 3co5_A Putative two-component 96.9 0.00062 2.1E-08 42.5 2.8 35 6-41 15-49 (143)
435 1n0w_A DNA repair protein RAD5 96.9 0.00062 2.1E-08 46.2 3.0 24 18-41 23-46 (243)
436 3syl_A Protein CBBX; photosynt 96.9 0.0015 5E-08 46.1 5.0 23 18-40 66-88 (309)
437 4b4t_K 26S protease regulatory 96.9 0.001 3.5E-08 49.2 4.2 25 16-40 203-227 (428)
438 1ltq_A Polynucleotide kinase; 96.9 0.00074 2.5E-08 47.5 3.3 22 20-41 3-24 (301)
439 3la6_A Tyrosine-protein kinase 96.8 0.047 1.6E-06 38.2 12.4 67 63-134 201-267 (286)
440 1yqt_A RNAse L inhibitor; ATP- 96.8 0.00096 3.3E-08 50.9 4.1 23 20-42 48-70 (538)
441 3b60_A Lipid A export ATP-bind 96.8 0.00066 2.3E-08 52.3 3.2 23 19-41 369-391 (582)
442 4b4t_M 26S protease regulatory 96.8 0.00083 2.8E-08 49.8 3.5 29 13-41 209-237 (434)
443 3euj_A Chromosome partition pr 96.8 0.00064 2.2E-08 51.0 2.9 21 20-40 30-50 (483)
444 1q3t_A Cytidylate kinase; nucl 96.8 0.00084 2.9E-08 45.6 3.2 23 18-40 15-37 (236)
445 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0015 5.1E-08 44.8 4.5 24 18-41 38-61 (262)
446 2dpy_A FLII, flagellum-specifi 96.8 0.00074 2.5E-08 50.2 3.0 29 15-43 153-181 (438)
447 3ozx_A RNAse L inhibitor; ATP 96.8 0.00096 3.3E-08 50.9 3.7 22 21-42 27-48 (538)
448 1a7j_A Phosphoribulokinase; tr 96.8 0.00039 1.3E-08 48.8 1.5 24 18-41 4-27 (290)
449 1svm_A Large T antigen; AAA+ f 96.8 0.00098 3.3E-08 48.5 3.4 25 17-41 167-191 (377)
450 3b5x_A Lipid A export ATP-bind 96.7 0.0012 4E-08 51.0 3.9 25 18-42 368-392 (582)
451 3qf7_A RAD50; ABC-ATPase, ATPa 96.7 0.00087 3E-08 48.6 3.0 19 22-40 26-44 (365)
452 1nlf_A Regulatory protein REPA 96.7 0.00086 2.9E-08 46.7 2.9 22 20-41 31-52 (279)
453 3ake_A Cytidylate kinase; CMP 96.7 0.00099 3.4E-08 44.0 3.1 20 21-40 4-23 (208)
454 3j16_B RLI1P; ribosome recycli 96.7 0.0012 4E-08 51.2 3.8 22 21-42 105-126 (608)
455 4b4t_J 26S protease regulatory 96.7 0.0012 4.1E-08 48.3 3.6 30 11-40 174-203 (405)
456 2yl4_A ATP-binding cassette SU 96.7 0.00068 2.3E-08 52.4 2.5 23 19-41 370-392 (595)
457 3qf4_B Uncharacterized ABC tra 96.7 0.00076 2.6E-08 52.2 2.7 23 19-41 381-403 (598)
458 2px0_A Flagellar biosynthesis 96.7 0.0024 8.1E-08 45.0 4.8 22 19-40 105-126 (296)
459 3b9p_A CG5977-PA, isoform A; A 96.7 0.00099 3.4E-08 46.7 2.9 23 19-41 54-76 (297)
460 1yqt_A RNAse L inhibitor; ATP- 96.7 0.0015 5.2E-08 49.9 4.0 24 20-43 313-336 (538)
461 3ozx_A RNAse L inhibitor; ATP 96.7 0.0013 4.5E-08 50.2 3.7 22 21-42 296-317 (538)
462 1sxj_D Activator 1 41 kDa subu 96.7 0.0018 6.2E-08 46.4 4.2 20 22-41 61-80 (353)
463 2qby_B CDC6 homolog 3, cell di 96.6 0.0026 8.9E-08 46.2 5.0 36 6-41 31-67 (384)
464 3pfi_A Holliday junction ATP-d 96.6 0.002 7E-08 46.0 4.4 24 18-41 54-77 (338)
465 3bk7_A ABC transporter ATP-bin 96.6 0.0016 5.3E-08 50.5 3.9 23 20-42 118-140 (607)
466 2qmh_A HPR kinase/phosphorylas 96.6 0.0012 4.2E-08 43.5 2.9 24 19-42 34-57 (205)
467 3zvl_A Bifunctional polynucleo 96.6 0.0011 3.8E-08 49.0 2.9 24 18-41 257-280 (416)
468 1sxj_C Activator 1 40 kDa subu 96.6 0.0024 8.2E-08 45.8 4.6 21 21-41 48-68 (340)
469 1c9k_A COBU, adenosylcobinamid 96.6 0.0014 4.7E-08 42.6 3.0 21 22-42 2-22 (180)
470 2dr3_A UPF0273 protein PH0284; 96.6 0.0013 4.4E-08 44.7 3.0 21 20-40 24-44 (247)
471 3qf4_A ABC transporter, ATP-bi 96.6 0.00087 3E-08 51.7 2.3 23 19-41 369-391 (587)
472 3bk7_A ABC transporter ATP-bin 96.6 0.0019 6.4E-08 50.1 4.0 23 21-43 384-406 (607)
473 4b4t_H 26S protease regulatory 96.6 0.0018 6.3E-08 48.1 3.8 30 11-40 235-264 (467)
474 1pzn_A RAD51, DNA repair and r 96.6 0.0013 4.5E-08 47.4 2.9 25 18-42 130-154 (349)
475 3pxg_A Negative regulator of g 96.6 0.0027 9.1E-08 47.7 4.7 25 17-41 199-223 (468)
476 4a82_A Cystic fibrosis transme 96.6 0.00064 2.2E-08 52.4 1.3 24 18-41 366-389 (578)
477 1l8q_A Chromosomal replication 96.5 0.0014 4.7E-08 46.7 2.9 22 20-41 38-59 (324)
478 3crm_A TRNA delta(2)-isopenten 96.5 0.0015 5.1E-08 46.5 3.0 21 20-40 6-26 (323)
479 3d3q_A TRNA delta(2)-isopenten 96.5 0.0014 4.9E-08 46.9 2.9 21 20-40 8-28 (340)
480 1sxj_E Activator 1 40 kDa subu 96.5 0.002 6.8E-08 46.3 3.7 20 22-41 39-58 (354)
481 1p5z_B DCK, deoxycytidine kina 96.5 0.00097 3.3E-08 46.0 1.9 24 17-40 22-45 (263)
482 2h92_A Cytidylate kinase; ross 96.5 0.0014 4.6E-08 43.9 2.6 23 19-41 3-25 (219)
483 3qks_A DNA double-strand break 96.5 0.0017 5.9E-08 43.0 3.0 19 22-40 26-44 (203)
484 2ocp_A DGK, deoxyguanosine kin 96.5 0.0019 6.4E-08 43.9 3.3 22 20-41 3-24 (241)
485 1vma_A Cell division protein F 96.5 0.0016 5.3E-08 46.1 2.9 21 20-40 105-125 (306)
486 3j16_B RLI1P; ribosome recycli 96.5 0.0021 7E-08 49.8 3.8 22 22-43 381-402 (608)
487 3bfv_A CAPA1, CAPB2, membrane 96.5 0.019 6.5E-07 39.8 8.3 64 64-133 192-256 (271)
488 4b4t_I 26S protease regulatory 96.5 0.002 6.9E-08 47.5 3.5 27 14-40 211-237 (437)
489 2r62_A Cell division protease 96.5 0.00087 3E-08 46.3 1.5 22 20-41 45-66 (268)
490 2qby_A CDC6 homolog 1, cell di 96.4 0.0017 5.8E-08 47.0 3.0 23 19-41 45-67 (386)
491 1tf7_A KAIC; homohexamer, hexa 96.4 0.0016 5.6E-08 49.5 2.9 21 19-39 39-59 (525)
492 2iw3_A Elongation factor 3A; a 96.4 0.002 6.8E-08 52.4 3.4 25 20-44 462-486 (986)
493 1ofh_A ATP-dependent HSL prote 96.4 0.0019 6.6E-08 45.4 3.0 23 19-41 50-72 (310)
494 4fcw_A Chaperone protein CLPB; 96.4 0.0023 7.8E-08 45.1 3.4 22 20-41 48-69 (311)
495 3exa_A TRNA delta(2)-isopenten 96.4 0.0021 7.2E-08 45.5 3.1 21 21-41 5-25 (322)
496 2bjv_A PSP operon transcriptio 96.4 0.0038 1.3E-07 43.0 4.4 25 18-42 28-52 (265)
497 3uk6_A RUVB-like 2; hexameric 96.4 0.004 1.4E-07 45.0 4.6 22 20-41 71-92 (368)
498 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0019 6.6E-08 46.0 2.9 23 19-41 45-67 (322)
499 2v1u_A Cell division control p 96.4 0.0031 1.1E-07 45.7 3.9 25 17-41 42-66 (387)
500 1u0j_A DNA replication protein 96.4 0.005 1.7E-07 42.5 4.7 22 20-41 105-126 (267)
No 1
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=2.4e-37 Score=205.58 Aligned_cols=173 Identities=31% Similarity=0.580 Sum_probs=146.0
Q ss_pred HHhhhhc-cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 10 WLRSLFF-KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 10 ~~~~~~~-~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
.+++++. ++.++|+++|++|+|||||++++.++. ...+.+|.+.....+...+..+.+||+||++++...+..+++++
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 86 (186)
T 1ksh_A 8 ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86 (186)
T ss_dssp ---------CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTC
T ss_pred HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCC
Confidence 3444444 678999999999999999999999888 66777888888888888899999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|++++.++.....++..+.......+.|+++|+||+|+.+....++..+.+.........++++++||++|.|
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 166 (186)
T 1ksh_A 87 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGED 166 (186)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCC
Confidence 99999999999999999999988887765556899999999999988777777777776554455677899999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
++++++++.+.+.++
T Consensus 167 i~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 167 LLPGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988753
No 2
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=7.1e-37 Score=203.69 Aligned_cols=170 Identities=63% Similarity=1.113 Sum_probs=147.9
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
..++.++|+|+|++|+|||||++++.++.+...+.+|.+..+..+....+.+.+||+||++++...+..+++++|++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 44578999999999999999999999999887888999988888889999999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+|++++.++.....|+..+.......++|+++|+||+|+......+++.+.+.........++++++||++|.|++++++
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 177 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ 177 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHH
Confidence 99999999999999998887654456899999999999987666677777766554445677899999999999999999
Q ss_pred HHHHHhhhcC
Q 030000 175 WLIKHSKTAK 184 (184)
Q Consensus 175 ~i~~~~~~~~ 184 (184)
+|.+.+.+++
T Consensus 178 ~l~~~~~~~~ 187 (188)
T 1zd9_A 178 WLIQHSKSRR 187 (188)
T ss_dssp HHHHTCC---
T ss_pred HHHHHHHhhc
Confidence 9999887653
No 3
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=2.3e-37 Score=206.17 Aligned_cols=180 Identities=33% Similarity=0.566 Sum_probs=153.0
Q ss_pred hHHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHH
Q 030000 3 FLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE 82 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 82 (184)
++..+.+++..+..++.++|+++|++|+|||||++++..+.+. ...+|.+.....+...+..+.+||+||++++...+.
T Consensus 6 ~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 84 (189)
T 2x77_A 6 WLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWR 84 (189)
T ss_dssp CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCS
T ss_pred HHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 4445566554432267899999999999999999999887765 356788887778888899999999999999988888
Q ss_pred hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEee
Q 030000 83 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.+++++|++++|+|+++++++.....++..++......+.|+++|+||+|+.+....+++.+.+.........++++++|
T Consensus 85 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 164 (189)
T 2x77_A 85 CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSS 164 (189)
T ss_dssp SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEcc
Confidence 89999999999999999999999999998887766667899999999999988767777777776555555677899999
Q ss_pred eccCCCHHHHHHHHHHHhhhc
Q 030000 163 CKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~~ 183 (184)
|++|.|++++++++.+.+.++
T Consensus 165 a~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 165 SKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp TTTCTTHHHHHHHHHHHHHHT
T ss_pred CCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999998765
No 4
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.2e-37 Score=203.22 Aligned_cols=175 Identities=27% Similarity=0.515 Sum_probs=145.5
Q ss_pred hHHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHH
Q 030000 3 FLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE 82 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 82 (184)
++..+.+ ++.++.++|+++|++|+|||||++++.++.+. .+.+|.+.....+...++.+.+||+||++++...+.
T Consensus 4 ~~~~~~~----~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 78 (187)
T 1zj6_A 4 LFTRIWR----LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWN 78 (187)
T ss_dssp HHHHHHH----HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETTEEEEEEECCC----CGGGH
T ss_pred HHHHHHH----hcCCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 4444444 44577899999999999999999999988876 667788877778888899999999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEee
Q 030000 83 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.+++++|++++|+|++++.++.....|+..+.......+.|+++|+||+|+.+....++..+.+.........++++++|
T Consensus 79 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 158 (187)
T 1zj6_A 79 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 158 (187)
T ss_dssp HHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEcc
Confidence 99999999999999999999999999998887764446899999999999987666677777766544445667899999
Q ss_pred eccCCCHHHHHHHHHHHhhh
Q 030000 163 CKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~ 182 (184)
|++|.|+++++++|.+.+..
T Consensus 159 a~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 159 ALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp TTTTBTHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 5
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=1.2e-36 Score=198.33 Aligned_cols=164 Identities=32% Similarity=0.620 Sum_probs=141.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
+||+++|++|+|||||++++.++.+.. ..+|.+.....+...++.+.+||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 79 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC
Confidence 589999999999999999999887763 5678887777788888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHH
Q 030000 100 RDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 179 (184)
+.++.....|+..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|++++++++.+.
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 80 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (164)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHH
Confidence 99999999998888776555689999999999998776667777777655555567789999999999999999999999
Q ss_pred hhhcC
Q 030000 180 SKTAK 184 (184)
Q Consensus 180 ~~~~~ 184 (184)
+.++|
T Consensus 160 i~~~k 164 (164)
T 1r8s_A 160 LRNQK 164 (164)
T ss_dssp C----
T ss_pred HhhcC
Confidence 88764
No 6
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=5.6e-37 Score=204.80 Aligned_cols=173 Identities=30% Similarity=0.593 Sum_probs=145.5
Q ss_pred HHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCC
Q 030000 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVS 89 (184)
Q Consensus 10 ~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 89 (184)
.+++++.++.++|+++|++|+|||||++++..+.+. ...+|.+.....++..++.+.+||+||++++...+..+++++|
T Consensus 20 ~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp GGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred HHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 455566778999999999999999999999988775 4567888777788888999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
++++|+|++++.++.....++..+.......+.|+++|+||+|+.+....+++.+.++........++++++||++|.|+
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999999988877655568999999999999877667777777776555556788999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030000 170 DAVIDWLIKHSKTA 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
+++++++.+.+.++
T Consensus 179 ~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 179 YDGLDWLSHELSKR 192 (192)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988653
No 7
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=1.3e-36 Score=201.28 Aligned_cols=173 Identities=34% Similarity=0.596 Sum_probs=143.5
Q ss_pred Hhhhhc--cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 11 LRSLFF--KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 11 ~~~~~~--~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
++++.. .+.++|+++|++|+|||||++++.++.+ ....+|.+.....+...++.+.+||+||++.+...+..+++++
T Consensus 6 ~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 84 (181)
T 1fzq_A 6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENT 84 (181)
T ss_dssp HHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTC
T ss_pred HHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCC
Confidence 344444 5789999999999999999999987754 3456788877777778899999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|++++.++.....|+..++......+.|+++|+||+|+.+....++..+.++........++++++||++|+|
T Consensus 85 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 164 (181)
T 1fzq_A 85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEG 164 (181)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCC
Confidence 99999999999999999988888876654556899999999999987766667777666544445567899999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q 030000 169 IDAVIDWLIKHSKTAK 184 (184)
Q Consensus 169 i~~l~~~i~~~~~~~~ 184 (184)
++++|+++.+.+.++|
T Consensus 165 i~~l~~~l~~~~~~~~ 180 (181)
T 1fzq_A 165 VQDGMNWVCKNVNAKK 180 (181)
T ss_dssp HHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999887653
No 8
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=7.9e-36 Score=195.60 Aligned_cols=167 Identities=34% Similarity=0.659 Sum_probs=146.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.++.++|+++|++|+|||||++++.++.+. ...+|.+.....+......+.+||+||++++...+..+++++|++++|+
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 82 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 356799999999999999999999988875 4667888888888888999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
|++++.++.....++..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|+++++++
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (171)
T 1upt_A 83 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEW 162 (171)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHH
Confidence 99999999999999888877654568999999999999887777777777765555566778999999999999999999
Q ss_pred HHHHhhhc
Q 030000 176 LIKHSKTA 183 (184)
Q Consensus 176 i~~~~~~~ 183 (184)
+.+.+.++
T Consensus 163 l~~~i~~~ 170 (171)
T 1upt_A 163 LVETLKSR 170 (171)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhhc
Confidence 99988764
No 9
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3e-36 Score=199.71 Aligned_cols=173 Identities=32% Similarity=0.581 Sum_probs=145.6
Q ss_pred HHhhhhc-cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 10 WLRSLFF-KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 10 ~~~~~~~-~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
.+.+++. ++.++|+++|++|+|||||++++.++.+ ....+|.+.....+...+..+.+||+||++++...+..+++++
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 86 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADT 86 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTE
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccC
Confidence 3444555 7889999999999999999999997777 5667788877777888889999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|++++.++.....++..+.......+.|+++|+||+|+.+....+++.+.+.........++++++||++|+|
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 166 (183)
T 1moz_A 87 AAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEG 166 (183)
T ss_dssp EEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 99999999999999999999998887765567899999999999987767777777776655555677899999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
++++++++.+.+.++
T Consensus 167 i~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 167 ITEGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988653
No 10
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=3.2e-36 Score=202.07 Aligned_cols=170 Identities=26% Similarity=0.564 Sum_probs=143.9
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.....+|+|+|++|+|||||++++.++.+.. .+.+|.+.....++...+.+.+||+||++++...+..+++++|+++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 345578999999999999999999999999887 7789999888889999999999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCC-------CCCcEEEEEeCCCcccccCHHHHHHHhCCCcc-CCCceeEEEeeec
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSL-------SGIPLLVLGNKIDKSEALSKQALVDQLGLESI-TDREVCCYMISCK 164 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 164 (184)
+|+|++++.++.....|+..++..... .++|+++|+||+|+......+++.+.++.... ....++++++||+
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 171 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGL 171 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTT
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCC
Confidence 999999999999999998888654221 37999999999999887777777777765433 4467789999999
Q ss_pred cCCCHHHHHHHHHHHhhhc
Q 030000 165 DSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~~ 183 (184)
+|.|++++|++|.+.+.+.
T Consensus 172 ~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 172 KGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp TTBTHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 9999999999999987653
No 11
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=7.4e-37 Score=206.86 Aligned_cols=156 Identities=22% Similarity=0.394 Sum_probs=121.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.+||+|+|++|+|||||++++..+.+...+.+|.+..+.. +....+.+.+|||+|+++|......++++++++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 56999999999999999999999999999999998855433 33455889999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CH---HHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SK---QALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|||++++.+|..+..|+..+..... .++|+++|+||+|+.+.. .. +++.+.+ ++++++|||++|.|
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~-~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~--------~~~~~e~SAktg~n 162 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERKAKEL--------NVMFIETSAKAGYN 162 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHT-TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEEEBTTTTBS
T ss_pred EeecchhHHHHHHHHHHHHHHHhcC-CCCeEEEEeeccchHhcCcccHHHHhhHHHHh--------CCeeEEEeCCCCcC
Confidence 9999999999999999988765433 679999999999997643 22 2333333 24699999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
|+++|+.|.+.+..
T Consensus 163 V~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 163 VKQLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988754
No 12
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=198.24 Aligned_cols=169 Identities=30% Similarity=0.606 Sum_probs=142.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
..+.++|+++|++|+|||||++++.+.. +...+.+|.+.....+...+..+.+||+||++++...+..+++++|++++|
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV 97 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 3467999999999999999999999887 566777898988888888889999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCC--CCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSL--SGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.++.....++..+...... .++|+++|+||+|+.+....++..+.+.........++++++||++|.|++++
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 177 (190)
T 2h57_A 98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEG 177 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence 9999988899998888888776544 68999999999999877667777776654444445678999999999999999
Q ss_pred HHHHHHHhhhcC
Q 030000 173 IDWLIKHSKTAK 184 (184)
Q Consensus 173 ~~~i~~~~~~~~ 184 (184)
+++|.+.+.+.|
T Consensus 178 ~~~l~~~i~~~k 189 (190)
T 2h57_A 178 VDWLQDQIQTVK 189 (190)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHHhc
Confidence 999999887643
No 13
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=1.2e-35 Score=196.70 Aligned_cols=164 Identities=27% Similarity=0.499 Sum_probs=140.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..+.++|+++|++|+|||||++++.++.+ ....+|.+.....+...+..+.+||+||++++...+..+++++|++++|+
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 96 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 96 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 34679999999999999999999998887 55667888777778888899999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
|++++.++.....++..+.......++|+++|+||+|+.+....+++.+.+.........++++++||++|.|+++++++
T Consensus 97 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 176 (181)
T 2h17_A 97 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEW 176 (181)
T ss_dssp ETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHH
Confidence 99999999999999988876544568999999999999876667777777765555556678999999999999999999
Q ss_pred HHHHh
Q 030000 176 LIKHS 180 (184)
Q Consensus 176 i~~~~ 180 (184)
|.+.+
T Consensus 177 l~~~l 181 (181)
T 2h17_A 177 MMSRL 181 (181)
T ss_dssp HHTC-
T ss_pred HHhhC
Confidence 98653
No 14
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=3.2e-35 Score=195.97 Aligned_cols=164 Identities=32% Similarity=0.525 Sum_probs=137.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..+.++|+++|++|+|||||++++.++.+. .+.+|.+.....+...++.+.+||+||++++...+..+++++|++++|+
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 356789999999999999999999988775 4667888877888888899999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc-------cCCCceeEEEeeeccCCC
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES-------ITDREVCCYMISCKDSIN 168 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++.++.....|+..++......+.|+++|+||+|+.+....++..+.+.... .....++++++||++|+|
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 9999999999999998887655556899999999999987666667766665432 123467899999999999
Q ss_pred HHHHHHHHHHHh
Q 030000 169 IDAVIDWLIKHS 180 (184)
Q Consensus 169 i~~l~~~i~~~~ 180 (184)
++++++++.+.+
T Consensus 179 i~~l~~~l~~~l 190 (190)
T 1m2o_B 179 YLEAFQWLSQYI 190 (190)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhhC
Confidence 999999998653
No 15
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=6.5e-35 Score=195.69 Aligned_cols=164 Identities=29% Similarity=0.572 Sum_probs=131.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
..+.++|+++|++|+|||||++++.++.+. .+.+|.+.....+...+..+.+|||||++++...+..+++++|++++|+
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 356789999999999999999999987764 4567777777778888899999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc---------c---CCCceeEEEeee
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES---------I---TDREVCCYMISC 163 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa 163 (184)
|++++.++.....|+..++......++|+++|+||+|+......++..+.+.... . ....++++++||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999998887665556899999999999987656666666655321 1 124578999999
Q ss_pred ccCCCHHHHHHHHHHHh
Q 030000 164 KDSINIDAVIDWLIKHS 180 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~ 180 (184)
++|+|++++|+++.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998765
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=207.41 Aligned_cols=167 Identities=33% Similarity=0.626 Sum_probs=144.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
++.++|+|+|++|+|||||++++.++.+... .+|.+.....++..++.+.+|||||++.+...+..+++++|++|+|+|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 4567999999999999999999998887543 478888888899999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
++++.++.....++..++......++|+++|+||+|+.+....+++.+.++........++++++||++|.||+++|++|
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999988877666789999999999998887888888888877666778899999999999999999999
Q ss_pred HHHhhhcC
Q 030000 177 IKHSKTAK 184 (184)
Q Consensus 177 ~~~~~~~~ 184 (184)
.+.+.+++
T Consensus 322 ~~~l~~~k 329 (329)
T 3o47_A 322 SNQLRNQK 329 (329)
T ss_dssp HHHHTC--
T ss_pred HHHHHhcC
Confidence 99988764
No 17
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.5e-33 Score=186.99 Aligned_cols=160 Identities=18% Similarity=0.277 Sum_probs=125.7
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+.+||+++|++|||||||+++++++.+...+.+|.+.....+...+ +.+.+||++|++++. +++++|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 3457899999999999999999999999988777777654444444444 778899999998876 677899999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc----cCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA----LSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|||++++.++..+..|+..+.......++|+++|+||+|+... ...++..+.... ....+++++||++|.|
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD----LKRCTYYETCATYGLN 166 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH----TTTCEEEEEBTTTTBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH----cCCCeEEEecCCCCCC
Confidence 99999999999999999888876655568999999999998421 222222222111 1124799999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
++++|+++.+.+.+.
T Consensus 167 v~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 167 VERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
No 18
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-34 Score=186.94 Aligned_cols=159 Identities=26% Similarity=0.379 Sum_probs=126.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.++|+++|++|+|||||++++.++.+.....++.+.... .+. ...+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 4689999999999999999999999887777777774432 333 345789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc---C--HHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL---S--KQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.. . .+...+.. ....++++++||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 155 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLA-----EEKGLLFFETSAKTGEN 155 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHH-----HHHTCEEEECCTTTCTT
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCC
Confidence 999999999998888887776543 3579999999999997642 1 11111111 11234799999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
++++++++.+.+.+
T Consensus 156 i~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 156 VNDVFLGIGEKIPL 169 (170)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 19
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=100.00 E-value=2e-32 Score=206.41 Aligned_cols=166 Identities=33% Similarity=0.631 Sum_probs=148.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEe
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVD 96 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d 96 (184)
.+.++|+++|.+|+|||||++++.++.+. ...+|.+.....+...++.+.+|||||++.+...+..+++++|++|+|+|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D 398 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 35799999999999999999999988865 45679999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHH
Q 030000 97 AADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 176 (184)
++++.++.....++..++......++|+++|+||+|+.+....+++.+.++........++++++||++|+||++++++|
T Consensus 399 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 478 (497)
T 3lvq_E 399 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 478 (497)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999988776555689999999999998877778888888776666677899999999999999999999
Q ss_pred HHHhhhc
Q 030000 177 IKHSKTA 183 (184)
Q Consensus 177 ~~~~~~~ 183 (184)
.+.+.+.
T Consensus 479 ~~~~~~~ 485 (497)
T 3lvq_E 479 TSNYKSK 485 (497)
T ss_dssp HHHCC--
T ss_pred HHHHHhc
Confidence 9988654
No 20
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=3.5e-33 Score=182.28 Aligned_cols=160 Identities=19% Similarity=0.290 Sum_probs=128.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+..... ++...+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999988887777777755433 334467899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.++.....|+..+.......+.|+++|+||+|+.+... .++..+.... ....+++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ----WCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH----TTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH----ccCCcEEEecCCCCCCHHHH
Confidence 99999988888888887776654456899999999999976432 2222222111 12457999999999999999
Q ss_pred HHHHHHHhh
Q 030000 173 IDWLIKHSK 181 (184)
Q Consensus 173 ~~~i~~~~~ 181 (184)
++++.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998874
No 21
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=4.8e-33 Score=185.07 Aligned_cols=162 Identities=17% Similarity=0.289 Sum_probs=126.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
++.++|+++|++|+|||||++++.++.+...+.+|.+.... . +....+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999998887777666653333 2 33344668899999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....+..+.+.. ...++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR----SYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999888877666678999999999999754322222222211 112369999999999999999
Q ss_pred HHHHHHhhh
Q 030000 174 DWLIKHSKT 182 (184)
Q Consensus 174 ~~i~~~~~~ 182 (184)
+++.+.+..
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998864
No 22
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.2e-32 Score=179.68 Aligned_cols=160 Identities=15% Similarity=0.120 Sum_probs=106.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE---EEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVV 95 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~ 95 (184)
.+||+++|++|+|||||++++.+..... ..++.+... ..+....+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 5899999999999999999998665432 233333222 224455678999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHH
Q 030000 96 DAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
|++++.++.....|+..+.......++|+++|+||+|+.+.... ++...... ....+++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----VFDCKFIETSAALHHNVQALF 155 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHH-----HTTCEEEECBGGGTBSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHH-----HhCCcEEEeccCCCCCHHHHH
Confidence 99999999999999998877766678999999999999754322 22111111 123479999999999999999
Q ss_pred HHHHHHhhhcC
Q 030000 174 DWLIKHSKTAK 184 (184)
Q Consensus 174 ~~i~~~~~~~~ 184 (184)
+++.+.+..+|
T Consensus 156 ~~l~~~~~~~r 166 (166)
T 3q72_A 156 EGVVRQIRLRR 166 (166)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999988764
No 23
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1.2e-32 Score=179.76 Aligned_cols=160 Identities=22% Similarity=0.312 Sum_probs=126.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-E--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-V--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+..... + ....+.+.+||+||++++...+..+++++|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 57899999999999999999999988877777776654432 3 33447899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..+... ...++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-----QWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHHH
Confidence 99999999999988888876655556899999999999976432 222222221 11347999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
++++.+.+.+
T Consensus 158 ~~~l~~~i~~ 167 (168)
T 1u8z_A 158 FFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 24
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.5e-33 Score=187.67 Aligned_cols=161 Identities=20% Similarity=0.288 Sum_probs=128.0
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
+..+.+||+++|.+|+|||||++++.++.+...+.+|.+..+.. +....+.+.+||+||++++...+..+++++|++
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 44578999999999999999999999999888877887755433 335668899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-----HHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
++|+|++++.++..+..|+..+.......++|+++|+||+|+.+.... ..+.+.. .++++++||++|
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~~Sa~~~ 171 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW--------GATFMESSAREN 171 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECCTTCH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh--------CCeEEEEeCCCC
Confidence 999999999999999999998877766678999999999998754322 2222222 247999999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q 030000 167 INIDAVIDWLIKHSKTA 183 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~~ 183 (184)
.|++++|++|.+.+.+.
T Consensus 172 ~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 172 QLTQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988654
No 25
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1e-32 Score=182.78 Aligned_cols=160 Identities=19% Similarity=0.277 Sum_probs=130.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-Ee--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.+||+++|++|+|||||++++.++.+...+.+|.+..+.. +. ...+.+.+||+||++++...+..+++++|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 3467999999999999999999999988887777777754432 22 34466788999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHH---HHHHHhCCCccCCCceeEEEeeec-cC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQ---ALVDQLGLESITDREVCCYMISCK-DS 166 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~Sa~-~~ 166 (184)
+|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..+ ++.+.++ ++++++||+ +|
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~~~Sa~~~~ 166 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN--------IPYIETSAKDPP 166 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT--------CCEEEEBCSSSC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC--------CeEEEeccCCCC
Confidence 999999999999999888887665555789999999999986532 222 2233222 469999999 99
Q ss_pred CCHHHHHHHHHHHhhhc
Q 030000 167 INIDAVIDWLIKHSKTA 183 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~~ 183 (184)
.|++++|+++.+.+.++
T Consensus 167 ~~v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 167 LNVDKTFHDLVRVIRQQ 183 (183)
T ss_dssp BSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 99999999999988753
No 26
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=4.5e-32 Score=181.09 Aligned_cols=162 Identities=22% Similarity=0.380 Sum_probs=130.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeec-----------CEEEEEEEcCCccchhHhH
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKG-----------NVTIKLWDLGGQRRFRTMW 81 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~-----------~~~~~~~d~~g~~~~~~~~ 81 (184)
....++|+++|++|+|||||++++.++.+.....+|.+..+. .+... .+.+.+||+||++++...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 356799999999999999999999999888777888886554 23322 5789999999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEE
Q 030000 82 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCY 159 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 159 (184)
..+++++|++++|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..+.... ..++++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~ 162 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK-----YGIPYF 162 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----HTCCEE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----cCCCEE
Confidence 999999999999999999999988888888776655446899999999999976322 2222221111 123699
Q ss_pred EeeeccCCCHHHHHHHHHHHhhh
Q 030000 160 MISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 160 ~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
++||++|.|+++++++|.+.+.+
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 27
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.6e-32 Score=182.43 Aligned_cols=162 Identities=22% Similarity=0.388 Sum_probs=130.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.+..+...+.+|.+.... .+ ....+.+.+||+||++++...+..+++++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45799999999999999999999999888777777764443 23 334588999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..+... ...++++++||++|.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR-----KHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH-----HcCCEEEEecCCCCCCHHH
Confidence 999999998998888888888766555689999999999995432 2222222211 1234799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030000 172 VIDWLIKHSKTA 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+++++.+.+.+.
T Consensus 168 l~~~l~~~~~~~ 179 (195)
T 1x3s_A 168 AFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhh
Confidence 999999987653
No 28
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=6.6e-33 Score=183.17 Aligned_cols=164 Identities=21% Similarity=0.334 Sum_probs=131.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-Eeec--CEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.++|+++|++|+|||||++++.++.+...+.+|.+..+.. +... .+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 4567999999999999999999999998887777877755433 3333 478999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+|+|++++.++.....|+..++......++|+++|+||+|+.+.... .+....+. ....++++++||++|.|+++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG----ASHHVAYFEASAKLRLNVDE 161 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH----HHTTCEEEECBTTTTBSHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEecCCCCCCHHH
Confidence 99999999999999888888766555568999999999999764322 11111111 11245799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030000 172 VIDWLIKHSKTA 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
++++|.+.+.+.
T Consensus 162 l~~~l~~~~~~~ 173 (181)
T 2fn4_A 162 AFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988653
No 29
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=4.8e-32 Score=182.11 Aligned_cols=161 Identities=27% Similarity=0.379 Sum_probs=121.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|+|||||++++.++.+...+.+|.+..+ ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 4569999999999999999999999988777777876433 3444443 78999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCce-eEEEeeeccCCCH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREV-CCYMISCKDSINI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 169 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+.. ..++..+.... .++ +++++||++|.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH-----YDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHH-----cCCCEEEEEeCCCCCCH
Confidence 9999999989988888887775543 3679999999999997632 22222222211 123 7999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030000 170 DAVIDWLIKHSKTA 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
+++|++|.+.+.++
T Consensus 181 ~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 181 EEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988653
No 30
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=5.7e-32 Score=176.90 Aligned_cols=160 Identities=26% Similarity=0.368 Sum_probs=128.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EE--eecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+.....++.+.... .+ ....+.+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999998887777777765443 22 334678999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+... .++..+... ...++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYAD-----DNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 9999999989998888887775543 25799999999999965322 222222211 123579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~~~~ 169 (170)
T 1r2q_A 158 EIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 31
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=183.99 Aligned_cols=163 Identities=21% Similarity=0.286 Sum_probs=131.2
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEee--cCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
...+.++|+|+|++|+|||||++++.++.+...+.+|.+.... .+.. ..+.+.+||+||++++...+..+++++|++
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 4456799999999999999999999998887777777764442 3333 346899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
++|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..+... ....+++++||++|.|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRANV 164 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-----HhCCeEEEEeCCCCCCH
Confidence 99999999999999988888887665556899999999999976432 223222221 11246999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030000 170 DAVIDWLIKHSKT 182 (184)
Q Consensus 170 ~~l~~~i~~~~~~ 182 (184)
++++++|.+.+..
T Consensus 165 ~~l~~~l~~~i~~ 177 (206)
T 2bov_A 165 DKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 32
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.7e-32 Score=181.33 Aligned_cols=162 Identities=18% Similarity=0.261 Sum_probs=128.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-Eeec--CEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+..... +... .+.+.+||+||++++...+..+++++|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 467999999999999999999999888887777877755432 3333 4788999999999998888999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..+... ...++++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE-----SWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH-----HhCCcEEEEecCCCCCHHH
Confidence 999999999999999988887766667899999999999865332 222222211 1134799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030000 172 VIDWLIKHSKTA 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+|+++.+.+...
T Consensus 159 l~~~l~~~~~~~ 170 (181)
T 3t5g_A 159 VFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 33
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=3e-32 Score=177.70 Aligned_cols=160 Identities=16% Similarity=0.284 Sum_probs=127.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+... ..+. ...+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 468999999999999999999999888777767665333 2233 3346699999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
+|++++.++.....++..+.......+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE-----EWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH-----HhCCCEEEecCCCCcCHHHH
Confidence 99999999998988888887665557899999999999865432 222111111 11246999999999999999
Q ss_pred HHHHHHHhhh
Q 030000 173 IDWLIKHSKT 182 (184)
Q Consensus 173 ~~~i~~~~~~ 182 (184)
++++.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998865
No 34
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=3.6e-32 Score=179.14 Aligned_cols=163 Identities=25% Similarity=0.394 Sum_probs=126.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+.....+|.+.... .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 46799999999999999999999998888777777775543 33333 378999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC---CCCCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMK---PSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|++++.++.....|+..+... ....++|+++|+||+|+.+.. ..++..+.... ....+++++||++|.|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----NGDYPYFETSAKDATN 160 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----TTCCCEEECCTTTCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh----cCCceEEEEeCCCCCC
Confidence 999999998888888777766432 223678999999999996432 23333322210 2245799999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
++++++++.+.+.++
T Consensus 161 i~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 161 VAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988654
No 35
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-31 Score=178.77 Aligned_cols=162 Identities=23% Similarity=0.342 Sum_probs=129.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
..+.+||+++|++|+|||||+++++++.+.....+|.+..... +....+.+.+||+||++++...+..+++++|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 3568999999999999999999999998877777777755433 233568899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
++|+|++++.++.....|+..+.... ..++|+++|+||+|+.+.. ..++..+... ...++++++||++|.|+
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAE-----SIGAIVVETSAKNAINI 173 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----TTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCcCH
Confidence 99999999999999988887765432 3579999999999997532 2333333221 12357999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030000 170 DAVIDWLIKHSKTA 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
++++++|.+.+.+.
T Consensus 174 ~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 174 EELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987653
No 36
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2.7e-32 Score=181.11 Aligned_cols=162 Identities=22% Similarity=0.305 Sum_probs=130.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-Ee--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.+||+++|++|+|||||++++.++.+...+.+|.+..... +. ...+.+.+||+||++++...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 457999999999999999999999988877777776644432 33 334689999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|++++.++.....|+..+.......++|+++|+||+|+.+.. ..++..+... ...++++++||++|.|+++
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-----QWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH-----HcCCeEEEeCCCCCCCHHH
Confidence 99999999999998888887766555689999999999997642 2233332221 1234799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030000 172 VIDWLIKHSKTA 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
++++|.+.+.++
T Consensus 171 l~~~l~~~i~~~ 182 (187)
T 2a9k_A 171 VFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 37
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=4.3e-33 Score=186.23 Aligned_cols=161 Identities=18% Similarity=0.225 Sum_probs=125.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.+||+++|++|+|||||++++.++.+...+.+|.+..+.. +....+.+.+||+||++++...+..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 3467999999999999999999999999888888888766544 2234577899999999999999999999999999
Q ss_pred EEEeCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCcccc----cCHHHHHHHhCCCccCCCcee-EEEeeeccC
Q 030000 93 YVVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEA----LSKQALVDQLGLESITDREVC-CYMISCKDS 166 (184)
Q Consensus 93 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 166 (184)
+|+|++++.++..+ ..|...+... ..++|+++|+||+|+.+. ...++..+.... .+++ ++++||++|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK-----LGCVAYIEASSVAK 172 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH-----HTCSCEEECBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHh-----cCCCEEEEeecCCC
Confidence 99999999999887 4454444322 357999999999999753 122222221111 1223 899999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q 030000 167 INIDAVIDWLIKHSKTA 183 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~~ 183 (184)
.|++++|+++.+.+.++
T Consensus 173 ~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp BSHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999988664
No 38
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.6e-32 Score=182.09 Aligned_cols=160 Identities=24% Similarity=0.346 Sum_probs=127.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|+|||||+++++++.+...+.+|.+..+. .+... .+.+.+||+||++++...+..+++++|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 35699999999999999999999999888778888775543 33333 478999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+... .++..+... ...++++++||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSE-----AQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999999988888877765432 35799999999999975322 222221111 123469999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|+++.+.+..
T Consensus 178 ~l~~~l~~~i~~ 189 (201)
T 2ew1_A 178 KLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 39
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-32 Score=182.95 Aligned_cols=166 Identities=20% Similarity=0.212 Sum_probs=127.7
Q ss_pred hhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-E--eecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 12 RSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-V--TKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
++....+.++|+++|++|+|||||++++.++.+...+.+|.+..+.. + ....+.+.+||+||+++ ...+..+++++
T Consensus 21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~ 99 (196)
T 2atv_A 21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWG 99 (196)
T ss_dssp ------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHC
T ss_pred hccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccC
Confidence 33444678999999999999999999999998887777777755533 3 33457899999999988 77788889999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
|++++|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..+... ...++++++||++|
T Consensus 100 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g 174 (196)
T 2atv_A 100 EGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT-----ELACAFYECSACTG 174 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTSEEEECCTTTC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH-----HhCCeEEEECCCcC
Confidence 99999999999999988888887776544446899999999999976422 222222111 11347999999999
Q ss_pred C-CHHHHHHHHHHHhhhc
Q 030000 167 I-NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 167 ~-~i~~l~~~i~~~~~~~ 183 (184)
. |++++|+++.+.+.++
T Consensus 175 ~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 175 EGNITEIFYELCREVRRR 192 (196)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhh
Confidence 9 9999999999988654
No 40
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.9e-31 Score=178.40 Aligned_cols=158 Identities=27% Similarity=0.438 Sum_probs=128.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|+|||||++++.++.+...+.++.+... ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 4579999999999999999999999988877777776444 3344444 78999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-----HHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-----QALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+.... +++.+.+ .++++++||++|.
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~g~ 164 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNAT 164 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT--------TCCEEEECTTTCT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHHc--------CCcEEEEeCCCCC
Confidence 9999999999988888877665443 357999999999999764322 2222222 2369999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030000 168 NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~~ 183 (184)
|++++|+++.+.+.+.
T Consensus 165 gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 165 NVEQSFMTMAAEIKKR 180 (196)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988653
No 41
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=3.8e-32 Score=184.27 Aligned_cols=158 Identities=22% Similarity=0.275 Sum_probs=126.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
....+||+++|++|+|||||++++.++.+...+.+|.+..+.. +....+.+.+||+||++++...+..+++++|+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 3467999999999999999999999999988888888866543 3455688999999999999999999999999999
Q ss_pred EEEeCCCCCCHHH-HHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--------------cCHH---HHHHHhCCCccCCC
Q 030000 93 YVVDAADRDSVPI-ARSELHELLMKPSLSGIPLLVLGNKIDKSEA--------------LSKQ---ALVDQLGLESITDR 154 (184)
Q Consensus 93 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~---~~~~~~~~~~~~~~ 154 (184)
+|+|++++.++.. ...|+..+.... .++|+++|+||+|+.+. ...+ .+.+.+
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------- 173 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL-------- 173 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH--------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc--------
Confidence 9999999999998 577776665442 57999999999999653 1121 222222
Q ss_pred ce-eEEEeeeccCCC-HHHHHHHHHHHhhhc
Q 030000 155 EV-CCYMISCKDSIN-IDAVIDWLIKHSKTA 183 (184)
Q Consensus 155 ~~-~~~~~Sa~~~~~-i~~l~~~i~~~~~~~ 183 (184)
++ +++++||++|.| ++++|+++.+.+...
T Consensus 174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 23 699999999998 999999999887653
No 42
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=5.2e-32 Score=180.26 Aligned_cols=163 Identities=26% Similarity=0.406 Sum_probs=125.4
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeec--CEEEEEEEcCCccchh-HhHHhhccCCC
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQRRFR-TMWERYCRGVS 89 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~-~~~~~~~~~~~ 89 (184)
...+.+||+++|++|+|||||+++++++.+.....+|.+... ..+... .+.+.+||+||++++. ..+..+++++|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 345679999999999999999999999888777777776443 334433 4789999999999998 78899999999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccC-
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDS- 166 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~- 166 (184)
++++|+|++++.++..+..|+..+.......++|+++|+||+|+.+... .++..+... ...++++++||++|
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 170 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD-----THSMPLFETSAKNPN 170 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEECCSSSGG
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH-----HcCCEEEEEeCCcCC
Confidence 9999999999999998888888877665557899999999999966432 222221111 12346999999999
Q ss_pred --CCHHHHHHHHHHHhhh
Q 030000 167 --INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 --~~i~~l~~~i~~~~~~ 182 (184)
+|++++|++|.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999988754
No 43
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.2e-31 Score=177.27 Aligned_cols=161 Identities=22% Similarity=0.324 Sum_probs=127.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...++|+++|++|+|||||+++++++.+.....+|.+.... .+. ...+.+.+||+||++++...+..+++++|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 46799999999999999999999999887777677664432 333 34578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+... .++..+... ...++++++||++|+|++
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 90 IVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQ-----ENGLFFMETSAKTATNVK 163 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEECCSSSCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHH-----HcCCEEEEEECCCCCCHH
Confidence 9999999989988888888776543 35899999999999965332 223222221 123479999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030000 171 AVIDWLIKHSKTA 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
+++++|.+.+...
T Consensus 164 ~l~~~l~~~~~~~ 176 (181)
T 2efe_B 164 EIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987653
No 44
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1e-31 Score=177.17 Aligned_cols=160 Identities=21% Similarity=0.286 Sum_probs=126.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+... ..+. ...+.+.+||+||++++...+..+++++|+++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 4679999999999999999999999888777777766443 2233 34578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .++..+.... ..++++++||++|.|++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 166 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEE-----NGLLFLEASAKTGENVE 166 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----TTCEEEECCTTTCTTHH
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHH-----cCCEEEEEeCCCCCCHH
Confidence 9999999988888888877665432 25799999999999965432 2222222211 23479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 167 ~l~~~l~~~i~~ 178 (179)
T 1z0f_A 167 DAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 45
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2.2e-32 Score=180.26 Aligned_cols=162 Identities=21% Similarity=0.325 Sum_probs=125.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEeecC---EEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN---VTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+ .....+...+ +.+.+||+||++++...+..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4679999999999999999999998887766666766 3344555544 8999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCc-EEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPS-LSGIP-LLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~-iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++|+|++++.++.....|+..+..... ..+.| +++|+||+|+.+... .++..+... ..+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ-----ENGFSSHFVSAKTGD 158 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH-----HcCCcEEEEeCCCCC
Confidence 999999999888888877776644211 01345 899999999976322 222222111 112479999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030000 168 NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~~ 183 (184)
|+++++++|.+.+.+.
T Consensus 159 gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGI 174 (178)
T ss_dssp THHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988765
No 46
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=3.4e-32 Score=177.70 Aligned_cols=159 Identities=23% Similarity=0.421 Sum_probs=126.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..+||+++|++|+|||||++++.++.+...+.+|.+.... .+. ...+.+.+||+||++++...+..+++++|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999998888777777764433 333 33578999999999999988999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK-----RLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEecCCCCCHH
Confidence 9999999888888888877765543 5799999999999976322 222222211 113479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 156 ~l~~~l~~~~~~ 167 (168)
T 1z2a_A 156 EVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 47
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1.2e-31 Score=175.45 Aligned_cols=160 Identities=22% Similarity=0.364 Sum_probs=127.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+.....++.+.... .+. .....+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 46799999999999999999999999887777777775443 233 34478999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+... ..+..|+++|+||+|+.+... .++...... ....+++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD-----SIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCcCHH
Confidence 999999998888888877766543 346799999999999976432 222222111 123579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
+++++|.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999998754
No 48
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=3.9e-32 Score=177.70 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=114.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCc--cceeEEEEe--ecCEEEEEEEcCCccchhH-hHHhhccCCCEEEE
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPT--VGFNMRKVT--KGNVTIKLWDLGGQRRFRT-MWERYCRGVSAILY 93 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t--~~~~~~~~~--~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~i~ 93 (184)
.+||+++|++|+|||||++++.+........++ .......+. ...+.+.+||+||++++.. .+..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 589999999999999999999876654443333 333333333 3457889999999998876 66677888999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|+++++++.....|+..+.......++|+++|+||+|+.+... .++..+... ...++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH-----HcCCcEEEecCccCCCHHH
Confidence 999999999999999999887765556899999999999975332 222222111 1134799999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030000 172 VIDWLIKHSKTAK 184 (184)
Q Consensus 172 l~~~i~~~~~~~~ 184 (184)
+|+++.+.+..+|
T Consensus 157 l~~~l~~~i~~~r 169 (169)
T 3q85_A 157 LFEGAVRQIRLRR 169 (169)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998765
No 49
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=182.72 Aligned_cols=166 Identities=22% Similarity=0.352 Sum_probs=116.1
Q ss_pred hhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEE--eecCEEEEEEEcCCccchhHhHHhhccC
Q 030000 12 RSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKV--TKGNVTIKLWDLGGQRRFRTMWERYCRG 87 (184)
Q Consensus 12 ~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 87 (184)
++...++.++|+++|++|+|||||+++++++.+.....+|.+... ..+ +...+.+.+||+||++++...+..++++
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 334556789999999999999999999999888766667766433 223 3445789999999999999999999999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc------c--CHHHHHHHhCCCccCCCceeEE
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA------L--SKQALVDQLGLESITDREVCCY 159 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~------~--~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
+|++++|+|++++.++.....|+..+... ...++|+++|+||+|+.+. . ..+... .+. ....++++
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~-~~~----~~~~~~~~ 174 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGE-KLA----MTYGALFC 174 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHH-HHH----HHHTCEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHH-HHH----HHcCCeEE
Confidence 99999999999998998888877665433 2257999999999999632 1 111111 111 11234799
Q ss_pred EeeeccCCCHHHHHHHHHHHhhhc
Q 030000 160 MISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 160 ~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
++||++|.|++++++++.+.+.++
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHTC-
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999988653
No 50
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=2.4e-32 Score=183.98 Aligned_cols=173 Identities=20% Similarity=0.250 Sum_probs=121.4
Q ss_pred HHHHHHhhh-hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhH
Q 030000 6 SILNWLRSL-FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMW 81 (184)
Q Consensus 6 ~~~~~~~~~-~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~ 81 (184)
...+++.+. ...+.+||+++|++|+|||||++++..+.+...+.+|.+..... ++...+.+.+||+||++++...+
T Consensus 16 ~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 95 (204)
T 4gzl_A 16 PRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 95 (204)
T ss_dssp --------------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTG
T ss_pred cchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence 344555443 33567999999999999999999999988877777776644332 33455778899999999999999
Q ss_pred HhhccCCCEEEEEEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc---------
Q 030000 82 ERYCRGVSAILYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI--------- 151 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--------- 151 (184)
..+++++|++++|+|++++.++.... .|+..+.... .++|+++|+||+|+.......+..+.......
T Consensus 96 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (204)
T 4gzl_A 96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 173 (204)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHH
Confidence 99999999999999999999998887 5555443332 57999999999999764332222221111000
Q ss_pred -CCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 152 -TDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 152 -~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
.....+++++||++|+|++++|+++.+.+
T Consensus 174 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 174 KEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 01123699999999999999999998865
No 51
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.98 E-value=7e-32 Score=183.33 Aligned_cols=161 Identities=20% Similarity=0.366 Sum_probs=127.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee--ec----------CEEEEEEEcCCccchhHhHH
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KG----------NVTIKLWDLGGQRRFRTMWE 82 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~--~~----------~~~~~~~d~~g~~~~~~~~~ 82 (184)
+..+||+++|++|+|||||+++++++.+...+.+|.+..+.. +. .. .+.+.+||+||++++...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 457999999999999999999999988877667777654432 22 22 57899999999999999999
Q ss_pred hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEE
Q 030000 83 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
.+++++|++++|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++..+... ...+++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD-----KYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH-----HCCCcEEE
Confidence 99999999999999999989888888777665544446899999999999976432 222222111 11246999
Q ss_pred eeeccCCCHHHHHHHHHHHhhh
Q 030000 161 ISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+||++|.|+++++++|.+.+.+
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 52
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.98 E-value=1.7e-31 Score=176.32 Aligned_cols=160 Identities=26% Similarity=0.441 Sum_probs=125.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+...+.++.+... ..+...+ +.+.+||+||++.+...+..+++++|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 4679999999999999999999999888777777766443 3444444 88999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... .++|+++|+||+|+.+.... ++...... ...++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAG-----QMGIQLFETSAKENVNVE 159 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHH-----HcCCeEEEEECCCCCCHH
Confidence 9999999999999888888775532 47999999999998764322 22211111 112369999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030000 171 AVIDWLIKHSKTA 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
++++++.+.+.+.
T Consensus 160 ~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 160 EMFNCITELVLRA 172 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 53
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.98 E-value=6.1e-32 Score=179.95 Aligned_cols=158 Identities=25% Similarity=0.444 Sum_probs=127.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
.+..++|+++|++|+|||||++++.++.+.....+|.+.... .+. ...+.+.+||+||++++...+..+++++|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 345799999999999999999999999887777777775443 233 3457899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--H---HHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--K---QALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... . +++.+.+ +++++++||++|
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~g 169 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDL--------GFEFFEASAKEN 169 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECBTTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHc--------CCeEEEEECCCC
Confidence 99999999988888888877765432 35799999999999976432 2 2222222 237999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030000 167 INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~ 182 (184)
.|+++++++|.+.+.+
T Consensus 170 ~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 170 INVKQVFERLVDVICE 185 (189)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998764
No 54
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.98 E-value=6.3e-32 Score=177.59 Aligned_cols=161 Identities=19% Similarity=0.145 Sum_probs=113.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEe--ecCEEEEEEEcCCccc--hhHhHHhhccCCCE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN--MRKVT--KGNVTIKLWDLGGQRR--FRTMWERYCRGVSA 90 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~--~~~~~--~~~~~~~~~d~~g~~~--~~~~~~~~~~~~~~ 90 (184)
.+.++|+++|++|+|||||++++.+..+.... ++.+.. ...+. ...+.+.+||+||++. +......+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 45799999999999999999999987765432 233322 23333 3446889999999987 55666778899999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 91 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|++++.++.....|+..+.......++|+++|+||+|+.+... .++...... ...++++++||++|.|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~g~g 155 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-----VFDCKFIETSATLQHN 155 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHH-----HHTSEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHH-----HcCCeEEEEecCCCCC
Confidence 999999999999999988888776655556899999999999976432 222111110 1124799999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
+++++++|.+.+...
T Consensus 156 i~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 156 VAELFEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987653
No 55
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=2.5e-32 Score=178.90 Aligned_cols=162 Identities=22% Similarity=0.297 Sum_probs=125.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+...+.+|.+..+.. .....+.+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 57899999999999999999999988877777777755443 223447899999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCC-CCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKP-SLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+|++++.++.....++..+.... ...+.|+++|+||+|+.+.... .+..... ....++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA-----RTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEecCCCCcCHHH
Confidence 99999888888777776654421 2247999999999999764332 1111111 11134799999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030000 172 VIDWLIKHSKTAK 184 (184)
Q Consensus 172 l~~~i~~~~~~~~ 184 (184)
++++|.+.+++++
T Consensus 157 l~~~l~~~~~~~~ 169 (172)
T 2erx_A 157 LFQELLNLEKRRT 169 (172)
T ss_dssp HHHHHHHTCCSSC
T ss_pred HHHHHHHHHhhhh
Confidence 9999999887653
No 56
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.98 E-value=2.8e-31 Score=176.20 Aligned_cols=160 Identities=21% Similarity=0.335 Sum_probs=127.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||++++.++.+...+.+|.+... ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 4579999999999999999999999988877777776443 3344444 78999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+..... ..+..+... ...++++++||++|.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQ-----ENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEecCCCCCCHH
Confidence 9999999989888888877664432 25799999999999965322 222222211 123579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|+++.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 57
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=8.7e-32 Score=177.72 Aligned_cols=162 Identities=25% Similarity=0.424 Sum_probs=118.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEE--Ee--ecCEEEEEEEcCCccchhHhHHhhccCCCE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYS-EDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSA 90 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~~~t~~~~~~~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 90 (184)
.++.++|+++|++|+|||||++++.++.+. ..+.+|.+..+.. +. ...+.+.+||+||++++...+..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 356799999999999999999999988874 3556666655442 23 334689999999999999999999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 91 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|++++.++..+..|+..+..... .++|+++|+||+|+..... .++..+... ...++++++||++|.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAK-----EYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHH-----HHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHH-----HcCCeEEEEeCCCCCC
Confidence 9999999998888888888777655432 6799999999999975432 222221111 1124699999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
++++++++.+.+.++
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
No 58
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.98 E-value=2.9e-31 Score=177.19 Aligned_cols=160 Identities=24% Similarity=0.375 Sum_probs=128.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--E--eecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--V--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...++|+|+|++|+|||||++++.+..+...+.+|.+..... + ....+.+.+||+||++++...+..+++++|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 356999999999999999999999998887777777754432 2 234578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+..... .++...... ...++++++||++|.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAE-----NNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999988888888887775543 36799999999999976432 222222211 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
+++++|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (193)
T 2oil_A 177 LAFETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 59
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.98 E-value=5.3e-32 Score=177.19 Aligned_cols=160 Identities=27% Similarity=0.334 Sum_probs=120.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.++|+++|++|+|||||++++.++.+.....+|.+.... .+. ...+.+.+||+||++++...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 46799999999999999999999998887777777775443 333 34578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+.. ..++..+... ....+++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAE-----SVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCeEEEecCCCCCCHH
Confidence 9999999989988888877654322 2478999999999997642 2222222221 113479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 60
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.98 E-value=2.6e-32 Score=178.63 Aligned_cols=160 Identities=24% Similarity=0.359 Sum_probs=120.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..++|+++|++|+|||||++++.++.+.....+|.+... ..+.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999888777777766443 33333 35789999999999999888999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .++..+... ..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHH
Confidence 999999888888888877765443 25799999999999944322 222211111 11246999999999999999
Q ss_pred HHHHHHHhhhc
Q 030000 173 IDWLIKHSKTA 183 (184)
Q Consensus 173 ~~~i~~~~~~~ 183 (184)
++++.+.+.++
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 61
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.98 E-value=9.5e-32 Score=175.08 Aligned_cols=161 Identities=17% Similarity=0.284 Sum_probs=126.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
+.++|+++|++|+|||||++++.++.+.....+|.+.... .+. ...+.+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 3589999999999999999999988887776676664432 233 3457789999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
+|++++.++.....|+..+.......+.|+++++||+|+.+.....+..+.+.. ..+++++++||++|.|++++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR----SYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH----HHTCCEEEECTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH----HcCCeEEEecCCCCCCHHHHHH
Confidence 999999888888888877765544457999999999998763222121111110 1123699999999999999999
Q ss_pred HHHHHhhh
Q 030000 175 WLIKHSKT 182 (184)
Q Consensus 175 ~i~~~~~~ 182 (184)
++.+.+.+
T Consensus 158 ~l~~~~~~ 165 (166)
T 2ce2_X 158 TLVREIRQ 165 (166)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998865
No 62
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.98 E-value=9.3e-32 Score=179.16 Aligned_cols=164 Identities=16% Similarity=0.238 Sum_probs=117.2
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
...+.++|+++|.+|+|||||++++.++.+.....+|.+.... .+. ...+.+.+||+||++++...+..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 3446799999999999999999999988877666666654432 233 3347799999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
++|+|+++..++.....|+..+.......++|+++|+||+|+.+.. ..++..+.... .+++++++||++|.|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~ 171 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS-----YGIPFIETSAKTRQGVE 171 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH-----HTCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH-----cCCeEEEEeCCCCCCHH
Confidence 9999999998988888887776554444579999999999987532 22222222111 12369999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030000 171 AVIDWLIKHSKTA 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
+++++|.+.+.+.
T Consensus 172 ~l~~~l~~~~~~~ 184 (190)
T 3con_A 172 DAFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 63
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.98 E-value=5.2e-32 Score=180.73 Aligned_cols=163 Identities=22% Similarity=0.341 Sum_probs=121.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeec--CEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
....++|+++|++|+|||||++++.++.+.....+|.+... ..+... .+.+.+||+||++++...+..+++++|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34679999999999999999999998888777677766443 334433 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
++|+|++++.++.....|+..+... ...++|+++|+||+|+.+... .++..+.... ....+++++||++|.|+
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~----~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQ----ITGMRFCEASAKDNFNV 177 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT----STTCEEEECBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHh----cCCCeEEEEeCCCCCCH
Confidence 9999999998998888776655433 335799999999999976432 2222222211 12457999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030000 170 DAVIDWLIKHSKTA 183 (184)
Q Consensus 170 ~~l~~~i~~~~~~~ 183 (184)
++++++|.+.+.++
T Consensus 178 ~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 178 DEIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988653
No 64
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.98 E-value=3.7e-32 Score=179.26 Aligned_cols=160 Identities=21% Similarity=0.352 Sum_probs=126.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
+.++|+++|++|+|||||+++++++.+.....+|.+.... .+... .+.+.+||+||++++...+..+++++|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 5699999999999999999999998888777777774443 33333 4789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|++++.++.....|+..+.... ..++|+++|+||+|+.+... .++...... ...++++++||++|.|+++
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-----ELNVMFIETSAKAGYNVKQ 166 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHH-----HHTCEEEEEBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHHH
Confidence 999999888888888887765432 25799999999999975432 222222111 1134799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030000 172 VIDWLIKHSKTA 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
++++|.+.+.++
T Consensus 167 l~~~l~~~~~~~ 178 (179)
T 2y8e_A 167 LFRRVAAALPGM 178 (179)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHhhc
Confidence 999999988765
No 65
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.98 E-value=4e-31 Score=177.86 Aligned_cols=157 Identities=22% Similarity=0.429 Sum_probs=127.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|+|||||+++++++.+.....+|.+.... .+. ...+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 35699999999999999999999999887777777775443 233 34578999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HH---HHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQ---ALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+... .+ .+.+.+ .++++++||++|.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~ 156 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHL--------GFEFFEASAKDNI 156 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH--------TCEEEECBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHHC--------CCeEEEEECCCCC
Confidence 9999999989988888877765432 35799999999999976432 22 222222 2379999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
|+++++++|.+.+.+
T Consensus 157 gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 157 NVKQTFERLVDVICE 171 (203)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987754
No 66
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=6.5e-32 Score=180.10 Aligned_cols=158 Identities=23% Similarity=0.421 Sum_probs=128.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+|+|++|+|||||++++.++.+.....+|.+.... . +....+.+.+||+||++.+...+..+++++|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 35699999999999999999999998887776666663333 2 3446789999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HH---HHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQ---ALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|++++.++..+..|+..+... ...++|+++|+||+|+.+... .+ .+.+.. .++++++||++|.
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL--------GFDFFEASAKENI 171 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH--------TCEEEECBTTTTB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHc--------CCeEEEEECCCCC
Confidence 999999999999888887777553 335899999999999865432 22 222222 2469999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030000 168 NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~~ 183 (184)
|++++|+++.+.+.++
T Consensus 172 gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 172 SVRQAFERLVDAICDK 187 (191)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988653
No 67
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.98 E-value=8.4e-32 Score=180.10 Aligned_cols=164 Identities=18% Similarity=0.181 Sum_probs=120.8
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc--ceeEEEE--eecCEEEEEEEcCCccchhH-hHHhhccCCC
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKV--TKGNVTIKLWDLGGQRRFRT-MWERYCRGVS 89 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~--~~~~~~~--~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~ 89 (184)
.....+||+++|++|||||||++++.+........++. ......+ +...+.+.+||++|++.+.. .+..+++++|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 34467999999999999999999997544332222322 2233333 34457889999999988765 6777889999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|+|++++.++..+..|+..+.......++|+++|+||+|+.+.. ..++..+... ....+++++||++|.
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~-----~~~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG-----TLSCKHIETSAALHH 173 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCEEEEEBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHH-----HhCCEEEEEcCCCCC
Confidence 999999999999999999998887655444579999999999997532 2222222111 112479999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030000 168 NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~~ 183 (184)
|++++|+++.+.+...
T Consensus 174 ~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 174 NTRELFEGAVRQIRLR 189 (195)
T ss_dssp SHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988764
No 68
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.98 E-value=2.5e-32 Score=180.11 Aligned_cols=156 Identities=17% Similarity=0.246 Sum_probs=116.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.+||+++|++|+|||||++++.++.+.. +.+|.+..+. .+. ...+.+.+||+||+++ ..+++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 467999999999999999999999988876 6667664432 233 3447789999999987 356788999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHh--cCCCCCCCcEEEEEeCCCccc----ccCHHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 94 VVDAADRDSVPIARSELHELL--MKPSLSGIPLLVLGNKIDKSE----ALSKQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~iivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
|+|++++.++.....|+..+. ......++|+++|+||+|+.+ ....++..+.... ...++++++||++|.
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXAD----MKRCSYYETXATYGL 154 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH----HSSEEEEEEBTTTTB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHh----hcCCeEEEEeccccC
Confidence 999999999999988654332 222235799999999999842 1122222221110 113579999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
|++++|+++.+.+.+
T Consensus 155 ~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 155 NVDRVFQEVAQKVVT 169 (178)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
No 69
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.98 E-value=3.5e-32 Score=180.19 Aligned_cols=160 Identities=24% Similarity=0.398 Sum_probs=98.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+..+. .+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 45799999999999999999999988877666677774443 344444 88999999999999988889999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+.+... .++..+... ..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLAL-----DYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHH-----HHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 9999999999998888887765432 25799999999999975322 222222111 113479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 70
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.98 E-value=8.7e-32 Score=179.49 Aligned_cols=160 Identities=21% Similarity=0.301 Sum_probs=123.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|+|||||++++.++.+.....+|.+... ..+.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 4579999999999999999999999888776666666333 33443 3478999999999999998999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ...++++++||++|.|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAR-----EHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHH-----HHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999989988888877775432 35799999999999975322 222222111 123479999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|++|.+.+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (191)
T 2a5j_A 173 EAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 71
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=1.9e-31 Score=178.57 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=123.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------CCCccceeEEE-----EeecCEEEEEEEcCCccchhH
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSED-----------MIPTVGFNMRK-----VTKGNVTIKLWDLGGQRRFRT 79 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~-----------~~~t~~~~~~~-----~~~~~~~~~~~d~~g~~~~~~ 79 (184)
....+||+++|++|+|||||++.+.+ .+... ..+|.+..+.. ++...+.+.+||+||++++..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 35679999999999999999976654 44333 23455544432 234567899999999999999
Q ss_pred hHHhhccCCCEEEEEEeCC------CCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCC
Q 030000 80 MWERYCRGVSAILYVVDAA------DRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITD 153 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 153 (184)
.+..+++++|++++|+|++ +..++..+..|+..+ .....++|+++|+||+|+.+....++..+.....
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~--~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~---- 163 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE---- 163 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTT----
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--ccccCCCCEEEEEEchhcccccCHHHHHHHHHhc----
Confidence 9999999999999999998 445666666666655 2234689999999999998776666666655432
Q ss_pred Cce-eEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 154 REV-CCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 154 ~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.+ +++++||++|+|++++|+++.+.+.+
T Consensus 164 -~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 164 -GKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp -CCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred -CCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 33 79999999999999999999998765
No 72
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.98 E-value=6e-32 Score=179.72 Aligned_cols=158 Identities=24% Similarity=0.327 Sum_probs=122.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.+||+++|++|+|||||+++++++.+...+.+|.+..+.. +....+.+.+||+||++++... ..+++++|+++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 3467999999999999999999999998887888888755432 3344578999999999988765 56889999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC--CCCCcEEEEEeCCCcccccC--HH---HHHHHhCCCccCCCceeEEEeee-c
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSEALS--KQ---ALVDQLGLESITDREVCCYMISC-K 164 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~Sa-~ 164 (184)
+|+|++++.++.....|+..+..... ..++|+++|+||+|+..... .+ ++.+.+ +++++++|| +
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~e~Sa~~ 168 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF--------GCLFFEVSACL 168 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH--------TCEEEECCSSS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc--------CCcEEEEeecC
Confidence 99999999999999888877754321 24799999999999965322 22 222222 247999999 8
Q ss_pred cCCCHHHHHHHHHHHhhh
Q 030000 165 DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~ 182 (184)
+|.|++++|+++.+.+.+
T Consensus 169 ~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 169 DFEHVQHVFHEAVREARR 186 (187)
T ss_dssp CSHHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHhh
Confidence 999999999999998865
No 73
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.98 E-value=5.2e-32 Score=179.01 Aligned_cols=163 Identities=26% Similarity=0.462 Sum_probs=115.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEee---cCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTK---GNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~---~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
++.++|+++|++|+|||||++++.++.+...+.+|.+... ..+.. ....+.+||+||++++...+..+++++|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 4679999999999999999999999888777777766333 33433 357899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCcEEEEEeCCCccccc---CHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSEAL---SKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++|+|++++.++.....|+..+.... ...++|+++|+||+|+.... ..++..+... .....+++++||++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~ 161 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAKN 161 (182)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecCC
Confidence 99999999988888888877665432 23679999999999995432 2222222211 02345799999999
Q ss_pred CCCHHHHHHHHHHHhhhc
Q 030000 166 SINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~~ 183 (184)
|.|++++++++.+.+.++
T Consensus 162 ~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 162 AINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999887653
No 74
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.98 E-value=2.1e-31 Score=179.59 Aligned_cols=160 Identities=27% Similarity=0.398 Sum_probs=127.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...++|+|+|++|+|||||++++.++.+...+.+|.+..+. .+.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45799999999999999999999999988777777764443 3333 3478999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+... .++..+... ...++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD-----ANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHH-----HTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHH-----HcCCeEEEEeCCCCCCHH
Confidence 9999999999999888877765433 35799999999999976332 222222111 123469999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|+++.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 75
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=5.8e-31 Score=177.13 Aligned_cols=158 Identities=21% Similarity=0.375 Sum_probs=126.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EeecC-------------------------------
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VTKGN------------------------------- 63 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~~~~------------------------------- 63 (184)
++.++|+|+|++|+|||||++++++..+...+.+|.+..... +...+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 457999999999999999999999998887777887744432 33222
Q ss_pred --------EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 64 --------VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 64 --------~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
..+.+||+||++++...+..+++++|++++|+|++++.++.....|+..+.... +.|+++|+||+|...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCccc
Confidence 789999999999999999999999999999999999989988888887776542 399999999999422
Q ss_pred -ccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 136 -ALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 136 -~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
....++..+.... ..++++++||++|.|+++++++|.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 162 FQVDILEVQKYAQD-----NNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CCSCHHHHHHHHHH-----TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH-----cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 2223333333221 23479999999999999999999988764
No 76
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=7.5e-32 Score=181.85 Aligned_cols=162 Identities=25% Similarity=0.416 Sum_probs=127.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--Ee--ecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
+..++|+|+|++|+|||||++++.+..+...+.+|.+..... +. ...+.+.+||+||++++...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 467999999999999999999999998887777777654433 33 33478999999999999988889999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCcEEEEEeCCCccccc-CHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPS---LSGIPLLVLGNKIDKSEAL-SKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|++++.++.....|+..+..... ..+.|+++|+||+|+.... ..++..+... .....+++++||++|.|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~g 161 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAIN 161 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTBS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCCC
Confidence 99999999888888888776654322 2478999999999997432 2222222211 02345799999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
+++++++|.+.+.+
T Consensus 162 i~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 162 VEQAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 77
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=1.1e-31 Score=178.02 Aligned_cols=165 Identities=20% Similarity=0.251 Sum_probs=123.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+.... . +....+.+.+||+||++++...+..+++++|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 35799999999999999999999988887777777764433 2 33445778899999999999999999999999999
Q ss_pred EEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc---------cCCCc-eeEEEee
Q 030000 94 VVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES---------ITDRE-VCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~S 162 (184)
|+|++++.++.... .|+..+.... .+.|+++|+||+|+.+.....+..+...... ....+ .+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999988888887 4555554332 3799999999999965422111111100000 00112 3799999
Q ss_pred eccCCCHHHHHHHHHHHhhhc
Q 030000 163 CKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~~ 183 (184)
|++|.|++++++++.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999988653
No 78
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.6e-31 Score=179.33 Aligned_cols=165 Identities=18% Similarity=0.236 Sum_probs=119.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEee--cCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...+||+++|++|+|||||++++.++.+...+.+|.+.... .+.. ..+.+.+||+||++++...+..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 45789999999999999999999998887777677664442 2333 34789999999999999989999999999999
Q ss_pred EEeCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc----------CCCceeEEEee
Q 030000 94 VVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI----------TDREVCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~S 162 (184)
|+|++++.++... ..|+..+... .+++|+++|+||+|+.+.....+....+..... .....+++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 9999998888888 4455444332 247999999999999764322222221111100 01112799999
Q ss_pred eccCCCHHHHHHHHHHHhhhc
Q 030000 163 CKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~~ 183 (184)
|++|.|+++++++|.+.+.+.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 79
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.2e-31 Score=177.88 Aligned_cols=159 Identities=21% Similarity=0.267 Sum_probs=124.7
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEee--cCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
..++.++|+++|++|+|||||++++.++.+...+.+|.+..+. .+.. ..+.+.+||+||++++...+..+++++|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 3346799999999999999999999999887777777765442 3333 348899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccC--------------HHH---HHHHhCCCccCC
Q 030000 92 LYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------KQA---LVDQLGLESITD 153 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------------~~~---~~~~~~~~~~~~ 153 (184)
++|+|++++.++.... .|+..+... ..++|+++|+||+|+.+... .++ +.+.++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------ 165 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG------ 165 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC------
Confidence 9999999998898887 565555443 24799999999999965321 111 111111
Q ss_pred CceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 154 REVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..+++++||++|+|++++++++.+.+..
T Consensus 166 -~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 166 -ACCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp -CSCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred -CcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 1269999999999999999999988753
No 80
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=1.5e-31 Score=181.37 Aligned_cols=165 Identities=22% Similarity=0.284 Sum_probs=105.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+..+. .+. ...+.+.+||+||++++...+..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 46799999999999999999999988887766677664432 233 345689999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCC---------ccCCCc-eeEEEee
Q 030000 94 VVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE---------SITDRE-VCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~S 162 (184)
|+|++++.++.... .|+..+... ..++|+++|+||+|+.......+..+..... .....+ .+++++|
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 99999998998886 555555332 2479999999999997643221111110000 000112 3799999
Q ss_pred eccCCCHHHHHHHHHHHhhhc
Q 030000 163 CKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~~ 183 (184)
|++|.|++++|++|.+.+.+.
T Consensus 190 A~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999988754
No 81
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.1e-31 Score=178.86 Aligned_cols=160 Identities=23% Similarity=0.331 Sum_probs=118.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+.+||+|+|++|+|||||+++++++.+...+.+|.+... ..+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998888777777766433 3344443 78999999999999888899999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++..+..|+..+..... .++|+++|+||+|+..... ..+..+... ...++++++||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDPEREVTFLEASRFAQ-----ENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTC-TTCEEEEEEECGGGGGGCCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEECCCcccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 99999999999888888777654322 5799999999999965332 222222211 123579999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++|+++.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 82
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=5.5e-32 Score=178.97 Aligned_cols=158 Identities=22% Similarity=0.341 Sum_probs=111.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeecCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
..+.+||+++|++|+|||||++++..+.+...+.+|.+..+. .+....+.+.+||+||++++...+..+++++|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 356799999999999999999999988887776677653332 13445677889999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccC------------H---HHHHHHhCCCccCCCce
Q 030000 93 YVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALS------------K---QALVDQLGLESITDREV 156 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~------------~---~~~~~~~~~~~~~~~~~ 156 (184)
+|+|++++.++.... .|+..+.... .++|+++|+||+|+.+... . .++.+.++ ..
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~ 155 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG-------AP 155 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT-------CS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC-------CC
Confidence 999999998998887 4555554332 3799999999999865322 1 11222221 13
Q ss_pred eEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 157 CCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 157 ~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+++++||++|+|++++++++.+.+.+
T Consensus 156 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 156 AYIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 69999999999999999999988753
No 83
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-31 Score=179.56 Aligned_cols=162 Identities=19% Similarity=0.285 Sum_probs=125.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...++|+++|++|+|||||++++.++.+...+.+|.+..+.. .....+.+.+||+||++++...+..+++++|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 467999999999999999999999988877777777755433 22345789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|++++.++.....++..+..... ..++|+++|+||+|+.+... .++...... ...++++++||++|.|+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ-----EWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH-----HHTCEEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Confidence 9999998888887777655543211 24789999999999975322 222211111 1124799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030000 172 VIDWLIKHSKTA 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+++++.+.+..+
T Consensus 161 l~~~l~~~~~~~ 172 (199)
T 2gf0_A 161 LFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHCSSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987654
No 84
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=3.7e-31 Score=179.17 Aligned_cols=159 Identities=26% Similarity=0.424 Sum_probs=124.7
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecC--EEEEEEEcCCccchhHhHHhhccCCCE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSA 90 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~ 90 (184)
.....++|+|+|++|+|||||++++++..+.....+|.+... ..+...+ +.+.+||+||++++...+..+++++|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 345679999999999999999999999888777777766443 3444444 789999999999999889999999999
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-H---HHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 91 ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-K---QALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 91 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+++|+|++++.++.....|+..+.... ..++|+++|+||+|+..... . .++.+.+ .++++++||++|
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~ 166 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKEL--------GIPFIESSAKND 166 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHHHH--------TCCEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHHHc--------CCEEEEEeCCCC
Confidence 999999999888888888877665432 24789999999999943222 2 2222222 236999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030000 167 INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~ 182 (184)
.|+++++++|.+.+.+
T Consensus 167 ~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 167 DNVNEIFFTLAKLIQE 182 (213)
T ss_dssp BSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 85
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=1.8e-31 Score=180.66 Aligned_cols=158 Identities=23% Similarity=0.327 Sum_probs=123.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-E--EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+..+. . +....+.+.+||+||++++...+..+++++|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 46799999999999999999999999887777777774443 2 33445789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCccccc----------CHHH---HHHHhCCCccCCCceeEE
Q 030000 94 VVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEAL----------SKQA---LVDQLGLESITDREVCCY 159 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----------~~~~---~~~~~~~~~~~~~~~~~~ 159 (184)
|+|++++.++.... .|+..+.... +++|+++|+||+|+.+.. ..++ +.+.++ ..+++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~ 157 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG-------AAAYI 157 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT-------CSEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC-------CceEE
Confidence 99999999998886 5665554332 479999999999986532 1211 222222 13699
Q ss_pred EeeeccCCCHHHHHHHHHHHhhhc
Q 030000 160 MISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 160 ~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
++||++|+|++++|+++.+.+.+.
T Consensus 158 ~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 158 ECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred EccCCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999887643
No 86
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=2.8e-31 Score=176.04 Aligned_cols=157 Identities=17% Similarity=0.272 Sum_probs=123.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE---EeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...+||+++|++|+|||||++++.++.+...+.+|.+..+.. +....+.+.+||+||++++...+..+++++|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 457999999999999999999999998887777777755432 23445889999999999999989999999999999
Q ss_pred EEeCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCcccc--------------cCHH---HHHHHhCCCccCCCc
Q 030000 94 VVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEA--------------LSKQ---ALVDQLGLESITDRE 155 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--------------~~~~---~~~~~~~~~~~~~~~ 155 (184)
|+|++++.++... ..|...+... .++.|+++|+||+|+.+. ...+ ++.+.++ .
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 155 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------A 155 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------C
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC-------C
Confidence 9999999898887 5565555332 247999999999999742 1111 1222221 2
Q ss_pred eeEEEeeec-cCCCHHHHHHHHHHHhhh
Q 030000 156 VCCYMISCK-DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 156 ~~~~~~Sa~-~~~~i~~l~~~i~~~~~~ 182 (184)
.+++++||+ +|.|++++|+++.+.+.+
T Consensus 156 ~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 156 ATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp SEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred cEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 479999999 689999999999988764
No 87
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=2.6e-31 Score=178.50 Aligned_cols=159 Identities=22% Similarity=0.278 Sum_probs=116.1
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEeec--CEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
...+.++|+++|++|+|||||++++.++.+...+.+|.+..+. .+... .+.+.+||+||++++...+..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 3456899999999999999999999988887777777764443 23333 46788999999999999889999999999
Q ss_pred EEEEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCccccc--------------CH---HHHHHHhCCCccCC
Q 030000 92 LYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEAL--------------SK---QALVDQLGLESITD 153 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--------------~~---~~~~~~~~~~~~~~ 153 (184)
++|+|++++.++.... .|+..+.... .++|+++|+||+|+.+.. .. ..+.+.++
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------ 167 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK------ 167 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC------
Confidence 9999999999998886 5665554432 379999999999997531 11 11111111
Q ss_pred CceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 154 REVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..+++++||++|.|++++|+++.+.+.+
T Consensus 168 -~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 168 -AASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp -CSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -CcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 1379999999999999999999988764
No 88
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.9e-31 Score=178.61 Aligned_cols=161 Identities=22% Similarity=0.336 Sum_probs=121.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...++|+|+|++|+|||||++++.++.+...+.+|.+... ..+...+ +.+.+||+||++++...+..+++++|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 4579999999999999999999999988777777766433 3344444 78999999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|++++.++.....|+..+.... ..++|+++|+||+|+..... .++..+... ...++++++||++|.|++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ-----ENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHH-----HTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCHH
Confidence 9999999999999888887775443 35789999999999976322 222222211 123579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030000 171 AVIDWLIKHSKTA 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
++|+++.+.+.++
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 89
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=1.4e-31 Score=180.59 Aligned_cols=161 Identities=17% Similarity=0.201 Sum_probs=93.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccc--eeEEEEeec----CEEEEEEEcCCccchhHhHHhhccCC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG--GYSEDMIPTVG--FNMRKVTKG----NVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~t~~--~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
...++|+++|++|+|||||++++.++ .+...+.+|.+ .....+... .+.+.+||+||++++...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56799999999999999999999988 67666777776 333444444 67899999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCC--CCCCcEEEEEeCCCccc-cc--CHHHHHHHhCCCccCCCceeEEEeee
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPS--LSGIPLLVLGNKIDKSE-AL--SKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
|++++|+|++++.++.....|+..+..... ..++|+++|+||+|+.+ .. ..++..+.... .+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT-----NTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH-----TTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH-----cCCEEEEecc
Confidence 999999999999999999988887765433 25799999999999976 22 22222222211 1257999999
Q ss_pred cc-CCCHHHHHHHHHHHhhh
Q 030000 164 KD-SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~-~~~i~~l~~~i~~~~~~ 182 (184)
++ |.|+++++++|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987754
No 90
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=5.6e-32 Score=183.92 Aligned_cols=162 Identities=22% Similarity=0.286 Sum_probs=126.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEee-----cCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTK-----GNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
...+||+++|.+|+|||||+++++++.+...+.+|.+........ ..+.+.+||+||++.+...+..++.++|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 467999999999999999999999888877777777755544332 127899999999999998899999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+.... .+....+. ....++++++||++|.|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVL----KGKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHT----TTCCCEEEEEBTTTTBTTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH----HHcCCcEEEEecCCCCCHH
Confidence 99999999999888888777664432 246899999999999764221 22222221 1234579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030000 171 AVIDWLIKHSKTA 183 (184)
Q Consensus 171 ~l~~~i~~~~~~~ 183 (184)
++++++.+.+...
T Consensus 164 ~l~~~l~~~~~~~ 176 (218)
T 4djt_A 164 LPFLHLARIFTGR 176 (218)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988654
No 91
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=1.1e-30 Score=177.14 Aligned_cols=163 Identities=24% Similarity=0.309 Sum_probs=115.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeec---CEEEEEEEcCCccchhH-hHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKG---NVTIKLWDLGGQRRFRT-MWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~i 92 (184)
++.++|+++|++|+|||||+++++++.+...+.++ +.....+... .+.+.+|||||++++.. .+..+++++|+++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 46799999999999999999999988877665543 3444445544 68899999999999988 7888899999999
Q ss_pred EEEeCCCCC-CHHHHHHHHHHHhcC--CCCCCCcEEEEEeCCCcccccCHHHHHHHhC----------------------
Q 030000 93 YVVDAADRD-SVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSKQALVDQLG---------------------- 147 (184)
Q Consensus 93 ~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~---------------------- 147 (184)
+|+|+++.. ++.....++...+.. ....++|+++|+||+|+......+...+.+.
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999998732 244444444444322 2235799999999999987655433332221
Q ss_pred -CCccC-----------CCceeEEEeeeccC------CCHHHHHHHHHHHh
Q 030000 148 -LESIT-----------DREVCCYMISCKDS------INIDAVIDWLIKHS 180 (184)
Q Consensus 148 -~~~~~-----------~~~~~~~~~Sa~~~------~~i~~l~~~i~~~~ 180 (184)
..... ...+++++|||++| .||+++|++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 00000 01678999999999 99999999998753
No 92
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=5.8e-31 Score=177.29 Aligned_cols=157 Identities=17% Similarity=0.266 Sum_probs=123.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-E--eecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-V--TKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...+||+++|++|+|||||++++.++.+...+.+|.+..+.. + +...+.+.+||+||++++...+..+++++|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 457999999999999999999999998887777777755432 2 3445889999999999999988999999999999
Q ss_pred EEeCCCCCCHHHH-HHHHHHHhcCCCCCCCcEEEEEeCCCccccc--------------CHH---HHHHHhCCCccCCCc
Q 030000 94 VVDAADRDSVPIA-RSELHELLMKPSLSGIPLLVLGNKIDKSEAL--------------SKQ---ALVDQLGLESITDRE 155 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~--------------~~~---~~~~~~~~~~~~~~~ 155 (184)
|+|++++.++... ..|+..+... ..+.|+++|+||+|+.+.. ..+ ++.+.++ .
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 176 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG-------A 176 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT-------C
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC-------C
Confidence 9999999898888 5665555433 2479999999999996421 111 1222221 2
Q ss_pred eeEEEeeec-cCCCHHHHHHHHHHHhhh
Q 030000 156 VCCYMISCK-DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 156 ~~~~~~Sa~-~~~~i~~l~~~i~~~~~~ 182 (184)
.+++++||+ +|.|++++|+++.+.+.+
T Consensus 177 ~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 177 ATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 479999999 689999999999988764
No 93
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=6.4e-31 Score=176.64 Aligned_cols=163 Identities=19% Similarity=0.255 Sum_probs=122.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEe--ecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM-RKVT--KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~-~~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
...+||+++|++|+|||||++++.++.+...+.+|.+..+ ..+. ...+.+.+||+||++++...+..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 4579999999999999999999999888777777776444 2233 344789999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc---------cCCCc-eeEEEee
Q 030000 94 VVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES---------ITDRE-VCCYMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~S 162 (184)
|+|++++.++.... .|...+... ..++|+++|+||+|+.+.....+......... ..... .+++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999998888884 454444332 24799999999999976422211111110000 00012 2799999
Q ss_pred eccCCCHHHHHHHHHHHhh
Q 030000 163 CKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~ 181 (184)
|++|.|+++++++|.+.+.
T Consensus 181 A~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998764
No 94
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=6.8e-30 Score=168.33 Aligned_cols=163 Identities=20% Similarity=0.310 Sum_probs=122.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc--ceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV--GFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
.++.++|+++|++|+|||||++++.++.+.....++. ......+...+..+.+||+||++++...+..++..+|++++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 4578999999999999999999999888776554433 34445567778899999999999998888888999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc-cCC---CceeEEEeeeccCCCH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES-ITD---REVCCYMISCKDSINI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~Sa~~~~~i 169 (184)
|+|++++....... .+.... ..++|+++|+||+|+... ..++..+.+.... ... ...+++++||++|.|+
T Consensus 85 v~d~~~~~~~~~~~-~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 85 VVAADDGVMPQTVE-AINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp EEETTCCCCHHHHH-HHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred EEECCCCCcHHHHH-HHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence 99998865444333 222222 247899999999999763 3333433332211 111 2368999999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 030000 170 DAVIDWLIKHSKTAK 184 (184)
Q Consensus 170 ~~l~~~i~~~~~~~~ 184 (184)
++++++|.+.+...+
T Consensus 159 ~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 159 DHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhc
Confidence 999999999887653
No 95
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=3e-31 Score=175.94 Aligned_cols=164 Identities=18% Similarity=0.301 Sum_probs=115.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCCccceeEEEEe-------ecCEEEEEEEcCCccchhHhHHhhccCCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG--GYSEDMIPTVGFNMRKVT-------KGNVTIKLWDLGGQRRFRTMWERYCRGVS 89 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~--~~~~~~~~t~~~~~~~~~-------~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 89 (184)
.+||+++|++|||||||++++.+. .+...+.+|.+....... ...+.+.+||++|++++...+..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999974 444556677776654432 24678999999999999988888899999
Q ss_pred EEEEEEeCCCC-CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH----HHHHHhCCCccCCCceeEEEeeec
Q 030000 90 AILYVVDAADR-DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ----ALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 90 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++++|+|++++ .++..+..|+..+.... .+.|+++|+||+|+.+..... +..+.+..........+++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 47888888887765432 478999999999996543221 112222211101111248999999
Q ss_pred cCC-CHHHHHHHHHHHhhhcC
Q 030000 165 DSI-NIDAVIDWLIKHSKTAK 184 (184)
Q Consensus 165 ~~~-~i~~l~~~i~~~~~~~~ 184 (184)
+|. +++++++.|.+.+.+.+
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC-
T ss_pred cCchhHHHHHHHHHHHHhccc
Confidence 996 99999999998887643
No 96
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=1.1e-31 Score=182.85 Aligned_cols=161 Identities=22% Similarity=0.400 Sum_probs=127.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE----EeecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
....+||+++|.+|+|||||+++++.+.+...+.+|.+..... +....+.+.+||+||++.+...+..+++++|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 3467999999999999999999988777666666676644443 334568899999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 92 LYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
++|+|++++.++.....|+..+.... .++|+++|+||+|+.+.....+.. .......++++++||++|.|+++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFEK 164 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGC-----CHHHHHTCEEEECBGGGTBTTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHH-----HHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999888888776543 479999999999997643221111 11112245799999999999999
Q ss_pred HHHHHHHHhhhc
Q 030000 172 VIDWLIKHSKTA 183 (184)
Q Consensus 172 l~~~i~~~~~~~ 183 (184)
+|+++.+.+...
T Consensus 165 l~~~l~~~l~~~ 176 (221)
T 3gj0_A 165 PFLWLARKLIGD 176 (221)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 999999987653
No 97
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=6.8e-30 Score=172.32 Aligned_cols=160 Identities=20% Similarity=0.190 Sum_probs=115.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCCcccee--EEEEe--ecCEEEEEEEcCCccc-hhHhHHhhccCCC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY--SEDMIPTVGFN--MRKVT--KGNVTIKLWDLGGQRR-FRTMWERYCRGVS 89 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~~~~t~~~~--~~~~~--~~~~~~~~~d~~g~~~-~~~~~~~~~~~~~ 89 (184)
...+||+++|++|+|||||++++.+... ...+ ++.+.. ...+. ...+.+.+||++|++. +......+++.++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 3569999999999999999999986433 3222 233322 23333 3446788999999887 4555666788999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|||++++.+|.....|+..+.......++|+++|+||+|+.+... .++.. .+. ....++++++||++|+
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~-~~a----~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-ACA----VVFDCKFIETSAAVQH 188 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-HHH----HHHTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHH-HHH----HHcCCEEEEEeCCCCC
Confidence 9999999999999999988877765443345799999999999965322 22111 110 0112479999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
||+++|+++.+.+..
T Consensus 189 ~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 189 NVKELFEGIVRQVRL 203 (211)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998754
No 98
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=8.6e-32 Score=180.63 Aligned_cols=158 Identities=28% Similarity=0.461 Sum_probs=118.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...+||+++|++|+|||||++++.++.+.....++.+ .....+...+ +.+.+||+||++++...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 3569999999999999999999998887766656555 3334444444 78999999999999998999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc-----CHHHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL-----SKQALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|++++.++.....|+..+... ...++|+++|+||+|+.+.. ....+.+.+ .++++++||++|.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL--------GIPFLETSAKNAT 181 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT--------TCCBCCCCC---H
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHc--------CCeEEEEECCCCC
Confidence 999999999999998888777544 33579999999999986532 223333332 3468999999999
Q ss_pred CHHHHHHHHHHHhhhc
Q 030000 168 NIDAVIDWLIKHSKTA 183 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~~ 183 (184)
|++++|++|.+.+.++
T Consensus 182 gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 182 NVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887654
No 99
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.96 E-value=3.7e-29 Score=167.19 Aligned_cols=162 Identities=20% Similarity=0.179 Sum_probs=109.5
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecCEEEEEEEcCC----------ccchhHhH
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGG----------QRRFRTMW 81 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g----------~~~~~~~~ 81 (184)
.+..+.++|+++|++|+|||||++++++..+.....++.+... ..... +..+.+||||| ++.+...+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 3445689999999999999999999998775444444333211 11222 23689999999 77777777
Q ss_pred HhhccCC---CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeE
Q 030000 82 ERYCRGV---SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCC 158 (184)
Q Consensus 82 ~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
..+++.+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+.+........+.+..........++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 7777766 9999999999887776543 2222222 578999999999997765443322222111111245689
Q ss_pred EEeeeccCCCHHHHHHHHHHHhh
Q 030000 159 YMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 159 ~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
+++||++|.|++++++++.+.++
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEEccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999998875
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=3.1e-30 Score=172.68 Aligned_cols=162 Identities=20% Similarity=0.303 Sum_probs=110.2
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcccee----EEEEe-ecCEEEEEEEcCCccchhHhH---Hhhcc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFN----MRKVT-KGNVTIKLWDLGGQRRFRTMW---ERYCR 86 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~----~~~~~-~~~~~~~~~d~~g~~~~~~~~---~~~~~ 86 (184)
+.++.+||+++|++|+|||||++++.+. +......+.+.. ...+. ...+.+.+||+||++++.... ..+++
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 4557899999999999999999988754 332222211211 11222 456899999999999987766 88999
Q ss_pred CCCEEEEEEeCCCC--CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH----HHH----HHHhCCCccCCCce
Q 030000 87 GVSAILYVVDAADR--DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QAL----VDQLGLESITDREV 156 (184)
Q Consensus 87 ~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~----~~~~~~~~~~~~~~ 156 (184)
++|++++|+|+++. +++.....|+..... ...++|+++|+||+|+.+.... ..+ .+.+.........+
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 99999999999987 344444444444422 2358999999999998653211 111 11111111124467
Q ss_pred eEEEeeeccCCCHHHHHHHHHHHh
Q 030000 157 CCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 157 ~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
+++++||++ .||+++|+.+.+.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 899999999 99999999998865
No 101
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=2.5e-29 Score=171.98 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=112.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEeecCEEEEEEEcCCc------cch---hHhHHhhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQ------RRF---RTMWERYC 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~------~~~---~~~~~~~~ 85 (184)
.+.++|+|+|++|+|||||++++++..+.... ..|.......+......+.+|||||+ ++. ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 46799999999999999999999987764222 23445555566667899999999998 431 12234457
Q ss_pred cCCCEEEEEEeCCCCCCHHHH--HHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH----HHHHhCCCccCCCceeEE
Q 030000 86 RGVSAILYVVDAADRDSVPIA--RSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA----LVDQLGLESITDREVCCY 159 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 159 (184)
..+|++++|+|++++.++... ..++..+... ..++|+++|+||+|+.+...... ..+.+.. ......+++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 182 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILD--NVKNPIKFS 182 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHH--HCCSCEEEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHH--hcCCCceEE
Confidence 888999999999998887522 2344444322 24799999999999976433211 1111110 011226799
Q ss_pred EeeeccCCCHHHHHHHHHHHhhhc
Q 030000 160 MISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 160 ~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
++||++|+|+++++++|.+.+.+.
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=3.5e-28 Score=158.44 Aligned_cols=149 Identities=23% Similarity=0.261 Sum_probs=109.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCEEEEEEEcCCccchh------HhHHhhcc--C
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFR------TMWERYCR--G 87 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~--~ 87 (184)
+.++|+++|++|+|||||++++.+..+.....+ |.......+...+..+.+|||||++++. .....+++ +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 358999999999999999999998765444334 3344445566678899999999988764 33345554 8
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc----CHHHHHHHhCCCccCCCceeEEEeee
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++++++|+|+++ +.....|+..+.. .++|+++|+||+|+.... ..+++.+.++ .+++++||
T Consensus 82 ~~~~i~v~D~~~---~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA 146 (165)
T 2wji_A 82 PDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSA 146 (165)
T ss_dssp CSEEEEEEETTC---HHHHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBG
T ss_pred CCEEEEEecCCc---hhHhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEc
Confidence 999999999976 3444455555543 378999999999986532 2344444443 36999999
Q ss_pred ccCCCHHHHHHHHHHHhh
Q 030000 164 KDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~ 181 (184)
++|+|++++|+++.+.++
T Consensus 147 ~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 147 AKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGTBSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998764
No 103
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=8.5e-32 Score=181.30 Aligned_cols=164 Identities=21% Similarity=0.268 Sum_probs=121.7
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE---EEeecCEEEEEEEcCCccchhHhHHhhccCCCEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAI 91 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 91 (184)
..++.++|+++|++|+|||||++++.++.+...+.+|.+.... .+....+.+.+||+||++++...+..+++++|++
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 4457899999999999999999999988877666666653332 2344567788999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHH---------HHhCCCccCCCce-eEEE
Q 030000 92 LYVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALV---------DQLGLESITDREV-CCYM 160 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~ 160 (184)
++|+|++++.++.... .|+..+... . .++|+++|+||+|+.+.....+.. ...........+. ++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~-~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
Confidence 9999999999998886 444444322 2 379999999999997543211110 0001111112233 7899
Q ss_pred eeeccCCCHHHHHHHHHHHh
Q 030000 161 ISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~ 180 (184)
+||++|.|+++++++|.+.+
T Consensus 184 vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999999998764
No 104
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.96 E-value=4.5e-29 Score=166.46 Aligned_cols=160 Identities=20% Similarity=0.192 Sum_probs=112.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCCcccee--EEEEe--ecCEEEEEEEcCCccc-hhHhHHhhccCCC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG--YSEDMIPTVGFN--MRKVT--KGNVTIKLWDLGGQRR-FRTMWERYCRGVS 89 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~~~~~t~~~~--~~~~~--~~~~~~~~~d~~g~~~-~~~~~~~~~~~~~ 89 (184)
...+||+++|++|+|||||++++.+.. +...+ ++.+.. ...+. ...+.+.+||++|++. +......+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999998533 33222 233322 23333 3446778999999876 4445566788899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--HHHHHHhCCCccCCCceeEEEeeeccCC
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK--QALVDQLGLESITDREVCCYMISCKDSI 167 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|||+++..++.....|+..+.......++|+++|+||+|+...... ++. ..+. ....++++++||++|.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~a----~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAXA----VVFDXKFIETSAAVQH 157 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHHH----HHTTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHHH----HHhCCceEEeccccCC
Confidence 99999999999999999888776654333457999999999998653221 111 1110 0112469999999999
Q ss_pred CHHHHHHHHHHHhhh
Q 030000 168 NIDAVIDWLIKHSKT 182 (184)
Q Consensus 168 ~i~~l~~~i~~~~~~ 182 (184)
||+++|+++.+.+..
T Consensus 158 ~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 158 NVKELFEGIVRQVRL 172 (192)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987743
No 105
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.96 E-value=2.1e-28 Score=158.66 Aligned_cols=149 Identities=18% Similarity=0.215 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccc-------hhHhHHhhccCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR-------FRTMWERYCRGVS 89 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~~~~~ 89 (184)
+||+++|++|+|||||++++.+..+. .....+.......+...+..+.+||+||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999987643 1222344455556777788999999999887 4556677889999
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCce-eEEEeeeccCCC
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREV-CCYMISCKDSIN 168 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 168 (184)
++++|+|+++..+.. ..++..++.. .+.|+++|+||+|+.+... +..+ +. ..+. +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~--~~~~-~~-----~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHEL--YLGP-LY-----GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGGG--GCGG-GG-----GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccchH--hHHH-HH-----hCCCCCeEEEecccCCC
Confidence 999999998865543 2334444333 4789999999999976421 1111 11 1122 689999999999
Q ss_pred HHHHHHHHHHHhh
Q 030000 169 IDAVIDWLIKHSK 181 (184)
Q Consensus 169 i~~l~~~i~~~~~ 181 (184)
++++++++.+.++
T Consensus 149 v~~l~~~l~~~l~ 161 (161)
T 2dyk_A 149 LEELLEAIWERLP 161 (161)
T ss_dssp HHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhCc
Confidence 9999999998763
No 106
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.96 E-value=1.8e-28 Score=160.89 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=110.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccchhHh--------HHhhcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM--------WERYCR 86 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~~ 86 (184)
+..+|+++|++|+|||||++++.+..+. .....|.+.....+...+..+.+|||||++++... ...+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 4689999999999999999999976542 12233444555667777788999999998653211 123578
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
++|++++|+|++++.++.. ..|+..+... ...++|+++|+||+|+.+... ........+++++||++|
T Consensus 83 ~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~g 150 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSARTG 150 (172)
T ss_dssp TCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTTC
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCCC
Confidence 9999999999999888763 3454444332 235799999999999854211 011123457999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030000 167 INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~ 182 (184)
.|+++++++|.+.+..
T Consensus 151 ~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 151 EGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TTHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHhhh
Confidence 9999999999987654
No 107
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=2.4e-29 Score=177.48 Aligned_cols=158 Identities=20% Similarity=0.273 Sum_probs=113.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEeecCEEEEEEEcCCccchhH---hHHhhccCCCEEEEE
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT---MWERYCRGVSAILYV 94 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~---~~~~~~~~~~~~i~v 94 (184)
||+++|+.|+|||||++++.++-++. ...+|.+.....+. ..+++++|||+||++|.. ....++++++++|+|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999887654432 25688887777663 458899999999999974 468899999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcC--CCCCCCcEEEEEeCCCcccccCH----HHHHHHhCCCccC----CCceeEEEeeec
Q 030000 95 VDAADRDSVPIARSELHELLMK--PSLSGIPLLVLGNKIDKSEALSK----QALVDQLGLESIT----DREVCCYMISCK 164 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~iivv~nK~D~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~Sa~ 164 (184)
+|++++ .+ ....++..++.. ...+++|+++++||+|+.+.... +++....+..... ..++++++|||+
T Consensus 80 ~Ditd~-~~-~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE-YI-NAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC-TT-HHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch-HH-HHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 33 333444333221 11357999999999999764321 2222222111111 246889999999
Q ss_pred cCCCHHHHHHHHHHHhhh
Q 030000 165 DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~ 182 (184)
+ .+|.++|..+.+.+..
T Consensus 158 d-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp S-SHHHHHHHHHHTTSST
T ss_pred C-CcHHHHHHHHHHHHHh
Confidence 8 5899999999887654
No 108
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.96 E-value=2.1e-28 Score=163.34 Aligned_cols=162 Identities=18% Similarity=0.164 Sum_probs=110.8
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEeecCEEEEEEEcCC----------ccchhHhHHh
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGG----------QRRFRTMWER 83 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~d~~g----------~~~~~~~~~~ 83 (184)
+....++|+++|++|+|||||++++++.... ...++.+.... .....+..+.+||+|| ++.+...+..
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 3456789999999999999999999987733 22233321111 1122244688999999 6667777777
Q ss_pred hccCC---CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEE
Q 030000 84 YCRGV---SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 84 ~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+++.+ +++++|+|+++..+..... +...+.. .++|+++|+||+|+.+....+...+...........+++++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence 76655 9999999998765544332 2222222 27899999999999765554444333322111223457999
Q ss_pred eeeccCCCHHHHHHHHHHHhhh
Q 030000 161 ISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+||++|.|++++++++.+.+.+
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC-
T ss_pred EecCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999998865
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.96 E-value=1.7e-29 Score=168.07 Aligned_cols=161 Identities=18% Similarity=0.218 Sum_probs=114.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCC-----------ccchhHhHHhhccC-
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG-----------QRRFRTMWERYCRG- 87 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g-----------~~~~~~~~~~~~~~- 87 (184)
++|+++|++|+|||||++++.+..+...+.++.......+... .+.+||+|| ++.+...+..++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999888766666555444444444 689999999 67777777777776
Q ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHH--------HhcCCCCCCCcEEEEEeCCCccccc--CHHHHHHHhCCCccCCCce
Q 030000 88 VSAILYVVDAADRDSVPIA-RSELHE--------LLMKPSLSGIPLLVLGNKIDKSEAL--SKQALVDQLGLESITDREV 156 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~iivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (184)
++++++|+++.+..++... ..|... +.......++|+++|+||+|+.... ..+++.+.++.. ......
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LSEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GGGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhh-hhccCC
Confidence 6666666666666677665 333221 1111112579999999999997643 234444445431 111124
Q ss_pred eEEEeeeccCCCHHHHHHHHHHHhhhc
Q 030000 157 CCYMISCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 157 ~~~~~Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
+++++||++|+|++++++++.+.+.+.
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 689999999999999999999988764
No 110
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=3.7e-28 Score=172.68 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=120.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEee-cCEEEEEEEcCCccch-----hHhHHhhccCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQRRF-----RTMWERYCRGV 88 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~-----~~~~~~~~~~~ 88 (184)
..+||+++|++|+|||||+++++++... ..+.+|.+.....+.. +++.+.+||+||++++ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 4689999999999999999999877332 3567888888877664 5799999999999988 66788889999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcC-CCCCCCcEEEEEeCCCcccccCHH-------HHHHHhCCCccCCCceeEEE
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMK-PSLSGIPLLVLGNKIDKSEALSKQ-------ALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 160 (184)
|++++|+|++++.++..+..|...+... ...+++|+++|+||+|+......+ +..+.+.. .......++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~-~~g~~~~~~~~ 160 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSS-EFGFPNLIGFP 160 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH-TTTCCSCEEEE
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHH-HcCCCCeEEEE
Confidence 9999999999999999887664433221 113579999999999997632222 11111110 01111368999
Q ss_pred eeeccCCCHHHHHHHHHHHh
Q 030000 161 ISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~ 180 (184)
+||++ .++.++|..+...+
T Consensus 161 tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CCTTS-SHHHHHHHHHHHTT
T ss_pred eeecC-ChHHHHHHHHHHHH
Confidence 99999 88999998887754
No 111
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1.8e-28 Score=176.23 Aligned_cols=166 Identities=19% Similarity=0.237 Sum_probs=123.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE-Eee--cCEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
.+..++|+++|.+|+|||||++++.++.+...+.+|.+..... +.. ..+.+.+||+||++.+...+..+++++|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3567999999999999999999999988877777777644432 333 3466779999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHH-HHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCc---------cCCCc-eeEEEe
Q 030000 93 YVVDAADRDSVPIAR-SELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLES---------ITDRE-VCCYMI 161 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~ 161 (184)
+|+|++++.++.... .|...+.... .++|+++|+||+|+.+.....+......... ....+ .+++++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 999999998888876 4444443322 3799999999999865321111111110000 00112 379999
Q ss_pred eeccCCCHHHHHHHHHHHhhhc
Q 030000 162 SCKDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~~~~~~ 183 (184)
||++|.|++++++++.+.+.+.
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999887653
No 112
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=6.4e-29 Score=172.43 Aligned_cols=161 Identities=12% Similarity=0.133 Sum_probs=114.1
Q ss_pred cceeEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCCCCcc-ceeEE--E----------------EeecCEE
Q 030000 17 KQEMELSLIGLQ---------NAGKTSLVNTIAT---GGYSEDMIPTV-GFNMR--K----------------VTKGNVT 65 (184)
Q Consensus 17 ~~~~~i~v~G~~---------~~GKstli~~~~~---~~~~~~~~~t~-~~~~~--~----------------~~~~~~~ 65 (184)
...+||+++|.+ |+|||||++++.+ ..+...+.+|. +..+. . ++...+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 456999999999 9999999999998 55555555553 32111 1 2345688
Q ss_pred EEEEE-----------------------cCCccchhHhHHhhcc---------------------CCCEEEEEEeCCCC-
Q 030000 66 IKLWD-----------------------LGGQRRFRTMWERYCR---------------------GVSAILYVVDAADR- 100 (184)
Q Consensus 66 ~~~~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~- 100 (184)
+.+|| ++|++++...+..+++ ++|++++|+|++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 6666766666666666 79999999999998
Q ss_pred -CCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHH
Q 030000 101 -DSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~ 179 (184)
.++..+..|+..+.......++|+++|+||+|+......++..+.... ...++++++||++|.|++++|++|.+.
T Consensus 177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS----KKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT----SSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh----cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 999999988887754422357999999999999653322222221111 124579999999999999999999988
Q ss_pred hh
Q 030000 180 SK 181 (184)
Q Consensus 180 ~~ 181 (184)
+.
T Consensus 253 l~ 254 (255)
T 3c5h_A 253 ID 254 (255)
T ss_dssp HH
T ss_pred hc
Confidence 75
No 113
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=5e-27 Score=166.86 Aligned_cols=161 Identities=19% Similarity=0.149 Sum_probs=121.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEeec-CEEEEEEEcCCccchh----------HhH
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKG-NVTIKLWDLGGQRRFR----------TMW 81 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~----------~~~ 81 (184)
..+.-.|+++|.+|+|||||+|++++..+.. ....|........... +.++.+|||||+.+.. ...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 4567889999999999999999999887642 2334545555556677 8999999999985433 566
Q ss_pred HhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc-cccCHHHHHHHhCCCccCCCceeEEE
Q 030000 82 ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS-EALSKQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
..+++++|++++|+|+++..+......|+..+.. .++|+++|+||+|+. +........+.+... .....++++
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~--~~~~~~i~~ 160 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKK--HPELTEIVP 160 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHH--CTTCCCEEE
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHh--ccCCCeEEE
Confidence 6778899999999999998888876665555433 478999999999997 444333333333211 112346999
Q ss_pred eeeccCCCHHHHHHHHHHHhhh
Q 030000 161 ISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+||++|.|++++++++.+.++.
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCB
T ss_pred EeCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999999998764
No 114
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.95 E-value=5.8e-28 Score=164.60 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=111.9
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCC--CCC--CCCccceeEEEEe-ecCEEEEEEEcCCc----------cchh
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGY--SED--MIPTVGFNMRKVT-KGNVTIKLWDLGGQ----------RRFR 78 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~--~~~--~~~t~~~~~~~~~-~~~~~~~~~d~~g~----------~~~~ 78 (184)
.+..+.++|+|+|.+|+|||||++++++... ... ...|.......+. ..+..+.+|||||. +.+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 3445679999999999999999999998762 111 2234444444444 45688999999994 4445
Q ss_pred HhHHhhccC---CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCcc----
Q 030000 79 TMWERYCRG---VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESI---- 151 (184)
Q Consensus 79 ~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~---- 151 (184)
.....+++. +|++++|+|+.+..+. ....+...+.. .++|+++|+||+|+.+........+.+.....
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~--~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTE--LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCH--HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 555566555 7889999999875443 22333333333 57899999999999765443222222111100
Q ss_pred --CCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 152 --TDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 152 --~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.....+++++||++|.|+++++++|.+.+..
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 1245689999999999999999999998765
No 115
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.95 E-value=7e-27 Score=165.34 Aligned_cols=156 Identities=19% Similarity=0.184 Sum_probs=114.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC-C--CCCccceeEEEEeecCEEEEEEEcCCccc--------hhHhHHhhcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSE-D--MIPTVGFNMRKVTKGNVTIKLWDLGGQRR--------FRTMWERYCR 86 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~ 86 (184)
+..+|+++|.+|+|||||+|++++..+.. . ...|.......+...+.++.+|||||..+ +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 45689999999999999999999887642 2 22333333344567789999999999776 4556667889
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++|++++|+|++++.+.. ..++...+.... .++|+++|+||+|+.+... ..+..+.+ ....+++++||++
T Consensus 86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSALD 156 (301)
T ss_dssp SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTTC
T ss_pred cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCCC
Confidence 999999999998875543 445444444321 4799999999999975433 33333333 1234689999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030000 166 SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~ 182 (184)
|.|++++++++.+.++.
T Consensus 157 g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 157 ERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999987643
No 116
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=6.7e-27 Score=155.32 Aligned_cols=151 Identities=23% Similarity=0.257 Sum_probs=114.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCEEEEEEEcCCccchh------HhHHhhcc--C
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFR------TMWERYCR--G 87 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~--~ 87 (184)
+.++|+++|++|+|||||++++.+..+.....+ |.......+...+..+.+|||||++.+. .....++. .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 568999999999999999999997665433333 3344555677778999999999988764 34455553 5
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc----CHHHHHHHhCCCccCCCceeEEEeee
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++++++|+|.++ +.....|+..+.. .+.|+++|+||+|+.... ..+++.+.++ .+++++||
T Consensus 86 ~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa 150 (188)
T 2wjg_A 86 PDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSA 150 (188)
T ss_dssp CSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBG
T ss_pred CCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEEEe
Confidence 999999999864 5566666665543 478999999999986532 3344444443 36999999
Q ss_pred ccCCCHHHHHHHHHHHhhhc
Q 030000 164 KDSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~~ 183 (184)
++|.|++++++++.+.+...
T Consensus 151 ~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 151 AKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp GGTBSHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999987653
No 117
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.95 E-value=1.2e-26 Score=155.56 Aligned_cols=160 Identities=22% Similarity=0.341 Sum_probs=120.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeec--CEEEEEEEcCCccchhHhHHhhccCCCEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQRRFRTMWERYCRGVSAIL 92 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 92 (184)
...++|+++|++|||||||++++.+..+...+.+|.+... ..+... .+.+.+||++|++++...+..+++++++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 3468999999999999999999999888777777766433 334443 467889999999998888888889999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|+.+..++.....|+..+... ...+.|+++++||+|+..... ..+..... ....+.++++|++++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 999999888887777776655332 224789999999999965322 22221111 1123468999999999999
Q ss_pred HHHHHHHHHhhh
Q 030000 171 AVIDWLIKHSKT 182 (184)
Q Consensus 171 ~l~~~i~~~~~~ 182 (184)
++++++.+.+.+
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.95 E-value=2.4e-26 Score=159.49 Aligned_cols=150 Identities=20% Similarity=0.230 Sum_probs=113.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEeecCEEEEEEEcCCccchhH------hHHhhc--c
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT------MWERYC--R 86 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~ 86 (184)
.+.++|+++|++|||||||++++.+..+.... +.|.......+...+..+.+||+||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45789999999999999999999987754333 3355555556777789999999999877653 223444 5
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc----CHHHHHHHhCCCccCCCceeEEEee
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
++|++++|+|+++.++ ...++..+.. .++|+++|+||+|+.... +.+++.+.++ ++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~---~~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQ---SLYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHH---HHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECC
T ss_pred CCCEEEEEeCCCchhh---HHHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEE
Confidence 8999999999987543 3334444443 379999999999986532 3455555554 3699999
Q ss_pred eccCCCHHHHHHHHHHHhh
Q 030000 163 CKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~ 181 (184)
|++|.|++++++++.+.++
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998765
No 119
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.95 E-value=4e-27 Score=174.66 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=114.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCc----------cchhHhHH-h
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ----------RRFRTMWE-R 83 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~----------~~~~~~~~-~ 83 (184)
..++|+++|++|+|||||+|++++.... ...+.|.+.....+...+..+.+|||||+ +.+..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 4589999999999999999999987652 22334555555667778888999999997 44544433 4
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEe
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMI 161 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++++|++++|+|++++.+++.. .++..+.. .++|+++|+||+|+.+... .++..+.+..........+++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 78889999999999998888765 34444432 4799999999999976543 22333332221122235689999
Q ss_pred eeccCCCHHHHHHHHHHHhhh
Q 030000 162 SCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
||++|.|++++++.+.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999887764
No 120
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.94 E-value=4.1e-26 Score=161.84 Aligned_cols=136 Identities=20% Similarity=0.302 Sum_probs=108.7
Q ss_pred CCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC----------CCCCHHHHHHHHHHHhcCC
Q 030000 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA----------DRDSVPIARSELHELLMKP 117 (184)
Q Consensus 48 ~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~ 117 (184)
..+|.|+....+...++.+.+||++|+++++..|..++++++++|+|+|++ +..++.....++..+....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 557888888888999999999999999999999999999999999999654 6777888888888887766
Q ss_pred CCCCCcEEEEEeCCCcccc------------------cCHHHHHHHh-----CCCccCCCceeEEEeeeccCCCHHHHHH
Q 030000 118 SLSGIPLLVLGNKIDKSEA------------------LSKQALVDQL-----GLESITDREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 118 ~~~~~~iivv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
...++|+++++||+|+.+. .+.++..+.+ .......+.+.+++|||+++.||+++|+
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 6678999999999998652 2333322221 1112234567789999999999999999
Q ss_pred HHHHHhhhc
Q 030000 175 WLIKHSKTA 183 (184)
Q Consensus 175 ~i~~~~~~~ 183 (184)
.+.+.+.++
T Consensus 311 ~v~~~Il~~ 319 (327)
T 3ohm_A 311 AVKDTILQL 319 (327)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999988754
No 121
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=1.2e-26 Score=176.23 Aligned_cols=156 Identities=22% Similarity=0.313 Sum_probs=108.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE------------eecCEEEEEEEcCCccchhHhHHhh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV------------TKGNVTIKLWDLGGQRRFRTMWERY 84 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~------------~~~~~~~~~~d~~g~~~~~~~~~~~ 84 (184)
.+.+||+++|.+|||||||++++.++.+.....+|.+...... +...+.+.+||+||++.+......+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 3579999999999999999999999988877888888766643 1235899999999999999999999
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEee
Q 030000 85 CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMIS 162 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
++++|++++|+|+++. .....|+..+.... .+.|+++|+||+|+..... .++..+.... ...+++++|
T Consensus 119 l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~vS 188 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPA-----IENRFHRIS 188 (535)
T ss_dssp HHSSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGG-----GTTCEEECC
T ss_pred ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHh-----cCCceEEEe
Confidence 9999999999999765 44555655554432 3689999999999976433 3333333221 234699999
Q ss_pred eccCCCHHHHHHHHHHHhhh
Q 030000 163 CKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 163 a~~~~~i~~l~~~i~~~~~~ 182 (184)
|++|.|++++++++.+.+.+
T Consensus 189 A~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp C-----CTTHHHHHHHHHTC
T ss_pred cCcccCHHHHHHHHHHHHhc
Confidence 99999999999999998765
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.94 E-value=8.3e-27 Score=163.24 Aligned_cols=150 Identities=24% Similarity=0.264 Sum_probs=111.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEeecCEEEEEEEcCCccchhH----------hHHhh-
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQRRFRT----------MWERY- 84 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~----------~~~~~- 84 (184)
+.++|+++|++|||||||+|++.+..+..... .|.......+...+..+.+|||||+..+.. ....+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 46899999999999999999999877543333 344555566777788999999999877652 22223
Q ss_pred -ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc----CHHHHHHHhCCCccCCCceeEE
Q 030000 85 -CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCY 159 (184)
Q Consensus 85 -~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+++|++++|+|+++.++. ..+...+.. .++|+++|+||+|+.+.. ..+.+.+.++ ++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~---~~~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIEIDALSARLG--------CPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHH---HHHHHHHHH----HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT--------SCEE
T ss_pred hhcCCCEEEEEecCCChHHH---HHHHHHHHh----cCCCEEEEEECccchhhhhHHHHHHHHHHhcC--------CCEE
Confidence 3789999999999874333 333333322 279999999999987643 3445555554 3699
Q ss_pred EeeeccCCCHHHHHHHHHHHhhh
Q 030000 160 MISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 160 ~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
++||++|.|++++++++.+.+..
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999887653
No 123
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=5.6e-26 Score=158.46 Aligned_cols=148 Identities=28% Similarity=0.304 Sum_probs=108.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCEEEEEEEcCCccchh------HhHHhhcc--C
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFR------TMWERYCR--G 87 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~--~ 87 (184)
..++|+++|++|||||||++++.+........+ |.......+.. +..+.+||+||+..+. .....++. +
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 357999999999999999999998764333333 44344444444 6789999999988765 34455554 6
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc----CHHHHHHHhCCCccCCCceeEEEeee
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+|++++|+|+++. .....+...+.. .++|+++++||+|+.... +.+.+.+.++ ++++++||
T Consensus 81 ~d~vi~V~D~t~~---e~~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNL---ERNLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBT
T ss_pred CCEEEEEecCCch---HhHHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEc
Confidence 9999999999864 333444444433 479999999999986532 3445555553 36999999
Q ss_pred ccCCCHHHHHHHHHHHhh
Q 030000 164 KDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~ 181 (184)
++|.|++++++++.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999998764
No 124
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=1.2e-26 Score=160.77 Aligned_cols=145 Identities=25% Similarity=0.284 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCEEEEEEEcCCccchhH----------hHHhhc--
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRT----------MWERYC-- 85 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~----------~~~~~~-- 85 (184)
.+|+++|++|||||||+|++.+........+ |.......+...+..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 4899999999999999999998765433333 44455666777888999999999877653 344556
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc----CHHHHHHHhCCCccCCCceeEEEe
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL----SKQALVDQLGLESITDREVCCYMI 161 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++|++++|+|+++.++. ..+...+ .. .++|+++|+||+|+.+.. ..+.+.+.++ ++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~---~~l~~~l-~~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERH---LYLTSQL-FE---LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHH---HHHHHHH-TT---SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEEC
T ss_pred CCCCEEEEEeeCCCchhH---HHHHHHH-HH---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEE
Confidence 889999999999874322 2222222 22 379999999999987643 3445555553 369999
Q ss_pred eeccCCCHHHHHHHHHHH
Q 030000 162 SCKDSINIDAVIDWLIKH 179 (184)
Q Consensus 162 Sa~~~~~i~~l~~~i~~~ 179 (184)
||++|.|++++++++.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999876
No 125
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.94 E-value=5.5e-26 Score=151.39 Aligned_cols=157 Identities=22% Similarity=0.347 Sum_probs=119.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecC--EEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
..++|+++|++|||||||++++.+..+...+.+|.+... ..+...+ +.+.+||++|++++...+..+++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 468999999999999999999999888877778777544 3344443 566789999999988888888899999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
|+|..+..++..+..|+..+... ...+.|+++++||+|+..... ........ ....+.++++|++++.|+++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~-----~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA-----EKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999887777777666554322 224789999999999965322 22211111 11234689999999999999
Q ss_pred HHHHHHHHh
Q 030000 172 VIDWLIKHS 180 (184)
Q Consensus 172 l~~~i~~~~ 180 (184)
+++++.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 126
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.94 E-value=2.7e-26 Score=164.99 Aligned_cols=135 Identities=20% Similarity=0.299 Sum_probs=107.0
Q ss_pred CCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC----------CCCHHHHHHHHHHHhcCCC
Q 030000 49 IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD----------RDSVPIARSELHELLMKPS 118 (184)
Q Consensus 49 ~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 118 (184)
.+|.|+....+...++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..+.....
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 457777777788889999999999999999999999999999999999998 4568888888888877655
Q ss_pred CCCCcEEEEEeCCCcccc-----------------cCHHHHHHHhC-----CCcc-CCCceeEEEeeeccCCCHHHHHHH
Q 030000 119 LSGIPLLVLGNKIDKSEA-----------------LSKQALVDQLG-----LESI-TDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 119 ~~~~~iivv~nK~D~~~~-----------------~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
..++|+++++||+|+.+. .+.++..+.+. .... ....+.+++|||++|.||.++|++
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence 568999999999998532 22333322221 1111 135678999999999999999999
Q ss_pred HHHHhhhc
Q 030000 176 LIKHSKTA 183 (184)
Q Consensus 176 i~~~~~~~ 183 (184)
+.+.+.+.
T Consensus 338 v~~~i~~~ 345 (353)
T 1cip_A 338 VTDVIIKN 345 (353)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887653
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.94 E-value=8.3e-26 Score=168.29 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=98.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHH--------hhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWE--------RYC 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~--------~~~ 85 (184)
++.++|+++|.+|+|||||+|++.+.... .....|.......+...++.+.+|||||+.++...+. .++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 45799999999999999999999977531 2223455555566778889999999999887654432 357
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH--HHHHhCCCccCCCceeEEEeee
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA--LVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++|++++|+|++++.++.....+.. ++... .++|+++|+||+|+.+...... +.+. ...+++++||
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~-~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~--------~~~~~i~vSA 379 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRE-LKAAH--PAAKFLTVANKLDRAANADALIRAIADG--------TGTEVIGISA 379 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHH-HHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHH--------HTSCEEECBT
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHH-HHHhc--CCCCEEEEEECcCCCCccchhHHHHHhc--------CCCceEEEEE
Confidence 88999999999999988854322222 22222 2799999999999976543321 2211 0136999999
Q ss_pred ccCCCHHHHHHHHHHHhh
Q 030000 164 KDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~ 181 (184)
++|+|+++++++|.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998876
No 128
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.94 E-value=2.7e-25 Score=163.41 Aligned_cols=164 Identities=21% Similarity=0.193 Sum_probs=115.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC---ccce-------------------eEEEEeecCEEEEEEEcCC
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP---TVGF-------------------NMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~---t~~~-------------------~~~~~~~~~~~~~~~d~~g 73 (184)
.++.++|+++|++++|||||++++.+......... +.+. ...........+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 35679999999999999999999986543321100 0000 0000011227899999999
Q ss_pred ccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhC--CCcc
Q 030000 74 QRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLG--LESI 151 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~--~~~~ 151 (184)
++++...+...+..+|++++|+|+++..++.....++...... ...|+++++||+|+.+.....+..+.+. ....
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999887677676666544322 2358999999999976543322222221 1112
Q ss_pred CCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 152 TDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.....+++++||++|+|+++++++|.+.++.
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 2345689999999999999999999987653
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.94 E-value=4.9e-26 Score=169.74 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=113.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCC----------ccchhHhHH-
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGG----------QRRFRTMWE- 82 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g----------~~~~~~~~~- 82 (184)
...++|+++|.+|+|||||++++++... ....+.|.......+...+..+.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 3569999999999999999999996652 12223344455566777888999999999 677766544
Q ss_pred hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEE
Q 030000 83 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
.+++.+|++++|+|+++..... ..++...+.. .++|+++|+||+|+.+... .++..+.+..........++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~~~--~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGIIEQ--DKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCCHH--HHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcCHH--HHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 4788999999999998754433 3333333332 4799999999999976432 2333333322211223468999
Q ss_pred eeeccCCCHHHHHHHHHHHhhh
Q 030000 161 ISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+||++|.|++++++++.+.+.+
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987754
No 130
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.93 E-value=5.7e-25 Score=159.36 Aligned_cols=159 Identities=19% Similarity=0.211 Sum_probs=117.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecCEEEEEEEcCCccchh---------HhHHhhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR---------TMWERYC 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~ 85 (184)
...++|+++|.+|+|||||++++.+...... ...|.+.....+......+.+|||||..... .......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 4678999999999999999999997764322 2345566666666778899999999975421 1222345
Q ss_pred cCCCEEEEEEeCCCCC--CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 86 RGVSAILYVVDAADRD--SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
..+|++++|+|+++.. ++.....++..+..... +.|+++|+||+|+......++..+... ....+++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFVK-----EKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHHH-----HTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHHH-----hcCCCeEEEeC
Confidence 5799999999998877 67777777776654322 799999999999976443333322221 12346899999
Q ss_pred ccCCCHHHHHHHHHHHhhh
Q 030000 164 KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~~ 182 (184)
++|+|++++++++.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 131
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=3.9e-25 Score=154.73 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=113.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEeecCEEEEEEEcCCccchhH------hHHhhc--cCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQRRFRT------MWERYC--RGV 88 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~~~ 88 (184)
.++|+++|++|||||||++++.+..+.....+ |.......+...+..+.+||+||+..+.. ....++ .++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNA 82 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCC
Confidence 57999999999999999999998776444444 44455556777888999999999887654 444555 689
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc----cCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA----LSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
|++++|+|+++. .....++..+... ..+|+++++||+|+.+. .....+.+.++ ++++++||+
T Consensus 83 d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~~~~Sa~ 148 (271)
T 3k53_A 83 DVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------VPVIPTNAK 148 (271)
T ss_dssp SEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------SCEEECBGG
T ss_pred cEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------CcEEEEEeC
Confidence 999999999864 3344444444443 23999999999998653 23455555554 369999999
Q ss_pred cCCCHHHHHHHHHHHhhh
Q 030000 165 DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~ 182 (184)
+|.|++++++++.+.+..
T Consensus 149 ~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 149 KGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GTBTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988754
No 132
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.93 E-value=9.4e-26 Score=160.53 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=106.2
Q ss_pred CCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC----------CCCCHHHHHHHHHHHhcCC
Q 030000 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA----------DRDSVPIARSELHELLMKP 117 (184)
Q Consensus 48 ~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~ 117 (184)
..+|.|+....+...++.+.+||++|+++++..|..++++++++|+|+|++ +..++.....++..+....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 345778888888888999999999999999999999999999999999998 6788888888998888776
Q ss_pred CCCCCcEEEEEeCCCccccc-----------------CHHHHH----HHh-------CCCccCC-----------CceeE
Q 030000 118 SLSGIPLLVLGNKIDKSEAL-----------------SKQALV----DQL-------GLESITD-----------REVCC 158 (184)
Q Consensus 118 ~~~~~~iivv~nK~D~~~~~-----------------~~~~~~----~~~-------~~~~~~~-----------~~~~~ 158 (184)
...++|+++++||+|+.... +.++.. +.+ ....... +.+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 66789999999999986421 112211 111 1111111 45788
Q ss_pred EEeeeccCCCHHHHHHHHHHHhhh
Q 030000 159 YMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 159 ~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+++||+++.||+.+|+.+.+.+.+
T Consensus 305 h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 305 NPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999988753
No 133
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.93 E-value=3.2e-25 Score=159.92 Aligned_cols=133 Identities=21% Similarity=0.300 Sum_probs=97.5
Q ss_pred CccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC----------CCCHHHHHHHHHHHhcCCCC
Q 030000 50 PTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD----------RDSVPIARSELHELLMKPSL 119 (184)
Q Consensus 50 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~ 119 (184)
+|.|+....+...++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....++..+.+....
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 35566666677788999999999999999999999999999999999998 66899889999888876555
Q ss_pred CCCcEEEEEeCCCcccc------------------cCHHHHHHHh-----CCCccC-CCceeEEEeeeccCCCHHHHHHH
Q 030000 120 SGIPLLVLGNKIDKSEA------------------LSKQALVDQL-----GLESIT-DREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 120 ~~~~iivv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
.++|+++++||+|+.+. .+.++..+.+ .+.... .+.+.+++|||++|.||+++|++
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~ 346 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD 346 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence 68999999999998632 2333333322 111111 34567899999999999999999
Q ss_pred HHHHhhh
Q 030000 176 LIKHSKT 182 (184)
Q Consensus 176 i~~~~~~ 182 (184)
+.+.+.+
T Consensus 347 v~~~i~~ 353 (362)
T 1zcb_A 347 VKDTILH 353 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.93 E-value=7.2e-25 Score=163.36 Aligned_cols=151 Identities=17% Similarity=0.253 Sum_probs=114.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCcc-chh--------HhHHhhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQR-RFR--------TMWERYC 85 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~-~~~--------~~~~~~~ 85 (184)
..++|+++|.+|+|||||+|++.+.+. ......|.+.....+...+..+.+|||||+. ++. .....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 458999999999999999999998753 2233346666667777888999999999987 543 2234578
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+++|++++|+|++++.++.... .+ ..+ .++|+++|+||+|+.+....++..+... ...+++++||++
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAkt 388 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRK-IL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALK 388 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHH-HH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGG
T ss_pred hcccEEEEEecCCCCCCHHHHH-HH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCC
Confidence 8999999999999988876543 22 222 3689999999999976544444443322 124689999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030000 166 SINIDAVIDWLIKHSK 181 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~ 181 (184)
|+|+++++++|.+.+.
T Consensus 389 g~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 389 GEGLEKLEESIYRETQ 404 (482)
T ss_dssp TCCHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998754
No 135
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.93 E-value=1e-25 Score=161.44 Aligned_cols=158 Identities=19% Similarity=0.222 Sum_probs=116.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEeecC-EEEEEEEcCCccc----hhHhHH---hhccCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRR----FRTMWE---RYCRGVS 89 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~----~~~~~~---~~~~~~~ 89 (184)
.+|+++|.+++|||||++++.+..+. .....|.......+...+ ..+.+||+||..+ +..+.. ..+++++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 46899999999999999999977643 222346666666666654 7899999999643 222323 3355699
Q ss_pred EEEEEEeCCC---CCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeec
Q 030000 90 AILYVVDAAD---RDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 90 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++++|+|+++ ..++.....+...+..... ..++|+++|+||+|+....+ .+++.+.+.. ..+++++||+
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~ 312 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAV 312 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECC
Confidence 9999999998 7788888877777765432 35799999999999965431 2333333321 1468999999
Q ss_pred cCCCHHHHHHHHHHHhhhc
Q 030000 165 DSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~~ 183 (184)
+++|+++++++|.+.+.+.
T Consensus 313 tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 313 TREGLRELLFEVANQLENT 331 (342)
T ss_dssp CSSTTHHHHHHHHHHHTSC
T ss_pred CCcCHHHHHHHHHHHHhhC
Confidence 9999999999999988754
No 136
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.93 E-value=1.7e-24 Score=159.44 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=104.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC---CCCCCCC--ccceeEEEEee-----------------------cCEEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG---YSEDMIP--TVGFNMRKVTK-----------------------GNVTIKL 68 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~---~~~~~~~--t~~~~~~~~~~-----------------------~~~~~~~ 68 (184)
+..++|+++|+.++|||||+++|.+.. +..+..+ |.+..+..... ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 457999999999999999999998432 2222222 55433322111 1278999
Q ss_pred EEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC----HHHHHH
Q 030000 69 WDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS----KQALVD 144 (184)
Q Consensus 69 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~ 144 (184)
||+||+++|...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+.+... .+++.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999999988888888999999999998764233333333322211 2358999999999976443 233333
Q ss_pred HhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 145 QLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.+.. ......+++++||++|+|+++++++|.+.++.
T Consensus 163 ~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 163 FVKG--TIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHTT--STTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHhh--cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 3321 12345689999999999999999999987653
No 137
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=9.9e-27 Score=158.01 Aligned_cols=118 Identities=23% Similarity=0.333 Sum_probs=94.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccC----C
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRG----V 88 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~----~ 88 (184)
..+.++|+++|++|+|||||++++.+..+.. ...++.+..+ ....+.+||+||++.+...+..+++. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 4567999999999999999999999877654 2333333222 56779999999999998888888877 8
Q ss_pred CEEEEEEeCC-CCCCHHHHHHHHHHHhcCC---CCCCCcEEEEEeCCCcccccC
Q 030000 89 SAILYVVDAA-DRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 89 ~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~~~~ 138 (184)
+++++|+|++ ++.++.....++..++... ...++|+++|+||+|+.....
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 9999999999 8899999988888776532 235799999999999977554
No 138
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.93 E-value=1.4e-24 Score=161.22 Aligned_cols=152 Identities=20% Similarity=0.233 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccc---------hhHhHHhhccC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRR---------FRTMWERYCRG 87 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~~ 87 (184)
.+|+++|.+|+|||||+|++++.+.. ...+.|.+..+..+...+..+.+|||||.+. +......+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 47999999999999999999987642 2233455566777888889999999999664 34556778999
Q ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHH-HHHhCCCccCCCceeEEEeeeccC
Q 030000 88 VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQAL-VDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 88 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+|++++|+|+.++.+... .++..++.. .++|+++|+||+|+.... .... .+... .. ..+++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~---lg--~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELYS---LG--FGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGG---GS--SCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHh---cC--CCCEEEEeccCC
Confidence 999999999987655433 334444332 368999999999985431 1111 11111 11 114789999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030000 167 INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~ 182 (184)
.|++++++++.+.++.
T Consensus 151 ~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 151 INLDTMLETIIKKLEE 166 (439)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccc
Confidence 9999999999988763
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.93 E-value=1.6e-24 Score=160.90 Aligned_cols=160 Identities=18% Similarity=0.111 Sum_probs=107.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCCccceeEEEEeecCEEEEEEEcCCccchhHh------------HH
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM------------WE 82 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------------~~ 82 (184)
..++|+++|++|||||||+|++++... ....+.|.......+...+..+.+|||||..+.... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 358999999999999999999997764 222334444555667777888999999997543322 12
Q ss_pred hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCCCccCCCceeEEE
Q 030000 83 RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 83 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
.+++.+|++++|+|+++..+.... .+...+.. .++|+++++||+|+.+... .++..+.+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 356779999999999887766542 22333222 4799999999999975432 3333332221111223457999
Q ss_pred eeeccCCCHHHHHHHHHHHhhh
Q 030000 161 ISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+||++|.|++++++.+.+.+.+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887654
No 140
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.92 E-value=1.4e-24 Score=160.05 Aligned_cols=162 Identities=17% Similarity=0.177 Sum_probs=111.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC---CCCCC--CCccceeEEEEee-----------------------cCEEEE
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGG---YSEDM--IPTVGFNMRKVTK-----------------------GNVTIK 67 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~---~~~~~--~~t~~~~~~~~~~-----------------------~~~~~~ 67 (184)
.+..++|+++|+.++|||||+++|.+.. +..+. ..|.+..+..... ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3567999999999999999999998432 22222 2255443332221 027899
Q ss_pred EEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH----HHHH
Q 030000 68 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK----QALV 143 (184)
Q Consensus 68 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~~ 143 (184)
+||+||+++|...+...+..+|++++|+|+++..........+..+... ...|+++++||+|+.+.... +++.
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999999888888888999999999998764222333333222111 23589999999999764322 2223
Q ss_pred HHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 144 DQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+.+.. ......+++++||++|+|+++++++|.+.++.
T Consensus 164 ~~l~~--~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 164 EFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHh--cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 33321 12245689999999999999999999987653
No 141
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.92 E-value=1.1e-24 Score=162.98 Aligned_cols=159 Identities=19% Similarity=0.194 Sum_probs=111.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC-------CCC--CCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGG-------YSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGV 88 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~-------~~~--~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 88 (184)
+.++|+++|++++|||||+++|.+.. ... ....|.+..+..+...+..+.+|||||+++|...+...+..+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 57999999999999999999999766 111 223455655666777889999999999999999999999999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCC--cc-CCCceeEEEeeecc
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE--SI-TDREVCCYMISCKD 165 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~Sa~~ 165 (184)
|++++|+|+++....+.. ..+..+ .. .++|+++++||+|+.+....++..+.+... .. .....+++++||++
T Consensus 98 D~~ilVvda~~g~~~qt~-e~l~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~ 172 (482)
T 1wb1_A 98 DLALIVVDAKEGPKTQTG-EHMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT 172 (482)
T ss_dssp CEEEEEEETTTCSCHHHH-HHHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred CEEEEEEecCCCccHHHH-HHHHHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcC
Confidence 999999999875433322 222222 22 368889999999997643332222222110 01 11256899999999
Q ss_pred CCCHHHHHHHHHHHhh
Q 030000 166 SINIDAVIDWLIKHSK 181 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~ 181 (184)
|+|+++++++|.+.++
T Consensus 173 g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 173 GFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhc
Confidence 9999999999998764
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.92 E-value=1e-24 Score=161.88 Aligned_cols=152 Identities=19% Similarity=0.235 Sum_probs=102.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHh--------hc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWER--------YC 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~--------~~ 85 (184)
++.++|+++|++|+|||||+|++++.... .....|.......+...+..+.+|||||..++...+.. ++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 35789999999999999999999975432 22233444555566778899999999998765443332 57
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeecc
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKD 165 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+.+|++++|+|++++.+... ..++..+ ...|+++|+||+|+....... . .... ....+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~--~~~~-~~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----S--LEYP-ENITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----T--CCCC-TTCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----H--HHHh-ccCCcEEEEECCC
Confidence 78999999999998776654 3333333 237999999999997643322 1 1111 1345799999999
Q ss_pred CCCHHHHHHHHHHHhhh
Q 030000 166 SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 166 ~~~i~~l~~~i~~~~~~ 182 (184)
|.|+++++++|.+.+..
T Consensus 368 g~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 KQGIDSLETAILEIVQT 384 (462)
T ss_dssp TBSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998754
No 143
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.92 E-value=1.3e-25 Score=164.82 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=108.9
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCE-EEEEEEcCCccchhHh-------HHh
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNV-TIKLWDLGGQRRFRTM-------WER 83 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~~~~-------~~~ 83 (184)
+....++|+++|+.|+|||||++++++..+. .....|.......++..+. .+.+|||||+.++... ...
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH
Confidence 3446799999999999999999999987753 2233455566666665554 8999999998766433 455
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeee
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++.++|++++|+|+. .......|+..+... ++|+++|+||+|+...... +..+.+.. ....+++++||
T Consensus 110 ~l~~aD~vllVvD~~---~~~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~~----~~g~~v~~vSA 177 (423)
T 3qq5_A 110 VFYRADCGILVTDSA---PTPYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYES----RYEAKVLLVSA 177 (423)
T ss_dssp HHTSCSEEEEECSSS---CCHHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSSC----CTTCCCCCCSS
T ss_pred HHhcCCEEEEEEeCC---ChHHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHHH----HcCCCEEEEEC
Confidence 788999999999982 223344555544433 7999999999999876554 33333321 22357999999
Q ss_pred ccCCCHHHHHHHHHHHhh
Q 030000 164 KDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 164 ~~~~~i~~l~~~i~~~~~ 181 (184)
++|.|+++++++|.+.++
T Consensus 178 ktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 178 LQKKGFDDIGKTISEILP 195 (423)
T ss_dssp CCTTSTTTHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHhhh
Confidence 999999999999999884
No 144
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=4.9e-25 Score=163.51 Aligned_cols=151 Identities=21% Similarity=0.255 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCcc--------chhHhHHhhccCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR--------RFRTMWERYCRGV 88 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~~ 88 (184)
.+|+++|.+|+|||||+|++.+.... ...+.|.+..+..++..+..+.+|||||++ .+...+..+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999976653 222334455566667777889999999985 5666777889999
Q ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 89 SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 89 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|+.++.+.. ..++...+.. .++|+++|+||+|+.+... . . .........+++++||++|.|
T Consensus 84 d~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~----~-~~~~~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMRA--N----I-YDFYSLGFGEPYPISGTHGLG 151 (436)
T ss_dssp SEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------C----C-CSSGGGSSCCCEECBTTTTBT
T ss_pred CEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccchh--h----H-HHHHHcCCCCeEEEeCcCCCC
Confidence 9999999998876654 3455555543 5789999999999865321 0 0 001111111589999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030000 169 IDAVIDWLIKHSKT 182 (184)
Q Consensus 169 i~~l~~~i~~~~~~ 182 (184)
+.++++++.+.++.
T Consensus 152 v~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 152 LGDLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHHHTGGG
T ss_pred hHHHHHHHHHhcCc
Confidence 99999999988763
No 145
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.92 E-value=1e-23 Score=160.34 Aligned_cols=159 Identities=17% Similarity=0.191 Sum_probs=111.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--CCCC---------------CCCCccceeEEEEee-----cCEEEEEEEcCCc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG--GYSE---------------DMIPTVGFNMRKVTK-----GNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~---------------~~~~t~~~~~~~~~~-----~~~~~~~~d~~g~ 74 (184)
++..+|+++|+.++|||||+++++.. .... ..+.|.......+.+ ..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 45689999999999999999999852 1110 011222222223322 2488999999999
Q ss_pred cchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCC
Q 030000 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDR 154 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
.+|...+...++.+|++++|+|+++....+....|.... . .++|+++++||+|+.... .++..+.+... ....
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~-lg~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV-LGLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT-SCCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHh-hCCC
Confidence 999999999999999999999999988887776665543 2 478999999999997643 32222222111 1112
Q ss_pred ceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 155 EVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..+++++||++|.|+++++++|.+.++.
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 2358999999999999999999998764
No 146
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.92 E-value=5.7e-24 Score=160.24 Aligned_cols=115 Identities=21% Similarity=0.224 Sum_probs=90.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC-----------------CCC-------CCCCccceeEEEEeecCEEEEEEEcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG-----------------YSE-------DMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~-----------------~~~-------~~~~t~~~~~~~~~~~~~~~~~~d~~ 72 (184)
.+..+|+++|++|+|||||+++|+... ... ....|.......+.+.++.+++||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 456899999999999999999996110 000 12335556666788889999999999
Q ss_pred CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
|+.++......+++.+|++++|+|+++.........| ..... .++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCccc
Confidence 9999999999999999999999999987777665443 33322 47899999999999653
No 147
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.92 E-value=7.4e-24 Score=161.30 Aligned_cols=155 Identities=18% Similarity=0.208 Sum_probs=108.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------CCCCccceeEEEEee-----cCEEEEEEEcCCcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGG--YSE---------------DMIPTVGFNMRKVTK-----GNVTIKLWDLGGQR 75 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~--~~~---------------~~~~t~~~~~~~~~~-----~~~~~~~~d~~g~~ 75 (184)
+..+|+++|+.++|||||+++++... ... ..+.|.......+.+ ..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46789999999999999999998521 110 111222222233333 24889999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCccC
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESIT 152 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~ 152 (184)
+|...+...++.+|++++|+|+++..+.+....|.... . .++|+++++||+|+..... .+++.+.++..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~--- 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID--- 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC---
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC---
Confidence 99999999999999999999999988887776665544 2 3789999999999976432 13333333321
Q ss_pred CCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 153 DREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..+++++||++|.|++++++++.+.++.
T Consensus 155 --~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 155 --ATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp --CTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred --cceEEEeecccCCCchhHHHHHhhcCCC
Confidence 1248999999999999999999998764
No 148
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.91 E-value=6.6e-24 Score=150.32 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=107.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCcc-chh--------HhHHhhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQR-RFR--------TMWERYC 85 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~-~~~--------~~~~~~~ 85 (184)
+..+|+++|++|+|||||+|++++.... .....|.......+...+.++.+|||||+. ... .....++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 4568999999999999999999987653 122234333344466778999999999987 322 2223457
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc-ccCHHHHHHHhCCCccCCCceeEEEeeec
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE-ALSKQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+.+|++++|+|+++ +.....++...+.. .+.|+++++||+|+.. .....+..+.+... .....++++||+
T Consensus 87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~---~~~~~~i~iSA~ 157 (301)
T 1ega_A 87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQ---MNFLDIVPISAE 157 (301)
T ss_dssp CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTT---SCCSEEEECCTT
T ss_pred hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHh---cCcCceEEEECC
Confidence 78999999999976 33344455444443 4789999999999875 22222222222111 111268999999
Q ss_pred cCCCHHHHHHHHHHHhhh
Q 030000 165 DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~~~~i~~l~~~i~~~~~~ 182 (184)
+|.|++++++.+.+.++.
T Consensus 158 ~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp TTTTHHHHHHHHHTTCCB
T ss_pred CCCCHHHHHHHHHHhCCc
Confidence 999999999999987653
No 149
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.91 E-value=4.3e-24 Score=154.84 Aligned_cols=146 Identities=10% Similarity=0.038 Sum_probs=112.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADR 100 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (184)
+|+++|++++|||||+++|+ ....|.+.....++..+..+++|||||+++|.......++.+|++++|+| ..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~- 94 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ- 94 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-
Confidence 89999999999999999998 45566777777788888899999999999998888888999999999999 54
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcE-EEEEe-CCCcccccCHH----HHHHHhCCCccCCCceeEEE--eeecc---CCCH
Q 030000 101 DSVPIARSELHELLMKPSLSGIPL-LVLGN-KIDKSEALSKQ----ALVDQLGLESITDREVCCYM--ISCKD---SINI 169 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~i-ivv~n-K~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~i 169 (184)
........++..... .++|. ++++| |+|+ +....+ ++.+.+.. .....+++++ +||++ |+|+
T Consensus 95 g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~--~~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 95 GLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSG--TVLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp CCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTT--STTTTCEEEECCCCTTSSSTTTTH
T ss_pred CCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHh--cCCCceEEEecccccccCcCCCCH
Confidence 445555555444332 35777 88899 9999 433222 22222221 1223568999 99999 9999
Q ss_pred HHHHHHHHHHhh
Q 030000 170 DAVIDWLIKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~~~ 181 (184)
+++++.|.+.++
T Consensus 168 ~~L~~~l~~~~~ 179 (370)
T 2elf_A 168 DELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999999988765
No 150
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.91 E-value=7.2e-24 Score=157.08 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=107.5
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCCCCCccceeEEEEee
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGY---------------------------------SEDMIPTVGFNMRKVTK 61 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~---------------------------------~~~~~~t~~~~~~~~~~ 61 (184)
..+..++|+++|++++|||||+++|+...- ....+.|.......++.
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 345679999999999999999999964311 01123466666667888
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCH------HHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcc
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSV------PIARSELHELLMKPSLSGIP-LLVLGNKIDKS 134 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~ 134 (184)
.+..+.+|||||+++|...+...+..+|++++|+|+++.... ......+.... . .++| +++++||+|+.
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~-~---~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-T---AGVKHLIVLINKMDDP 168 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH-H---cCCCeEEEEeecCCCc
Confidence 889999999999999999999999999999999999875321 12222222221 1 3566 99999999985
Q ss_pred ccc----CHHHHHH----HhCCCccC-CCceeEEEeeeccCCCHHHHHH
Q 030000 135 EAL----SKQALVD----QLGLESIT-DREVCCYMISCKDSINIDAVID 174 (184)
Q Consensus 135 ~~~----~~~~~~~----~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~ 174 (184)
... ..++..+ .+...... ...++++++||++|+|+.++.+
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 421 1112112 11111111 1256899999999999998554
No 151
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.91 E-value=4.7e-24 Score=156.49 Aligned_cols=160 Identities=15% Similarity=0.089 Sum_probs=112.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC-------CCCC-----------CCCCccceeEEEEeecCEEEEEEEcCCccchhH
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG-------GYSE-----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 79 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~-------~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 79 (184)
++++|+++|++++|||||+++|++. .+.. ....|.+.....++..+..+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 5789999999999999999999863 1110 122344444455666778999999999999998
Q ss_pred hHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccC-H----HHHHHHhCCCccCC
Q 030000 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALS-K----QALVDQLGLESITD 153 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~-~----~~~~~~~~~~~~~~ 153 (184)
.+...+..+|++++|+|+++....+.... +..+.. .++| +++++||+|+.+... . ++..+.+.......
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREH-LLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHH-HHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHH-HHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 88899999999999999988765544333 332222 3678 689999999974211 1 12222221111222
Q ss_pred CceeEEEeeeccCCC----------HHHHHHHHHHHhhh
Q 030000 154 REVCCYMISCKDSIN----------IDAVIDWLIKHSKT 182 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~----------i~~l~~~i~~~~~~ 182 (184)
...+++++||++|.| +.++++.+.+.++.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 346899999999775 89999999887653
No 152
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.91 E-value=1.2e-23 Score=157.89 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=104.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCCCCCccceeEEEEeec
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGY---------------------------------SEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~---------------------------------~~~~~~t~~~~~~~~~~~ 62 (184)
.+..++|+++|++++|||||+++|+.... ....+.|.......++..
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 35789999999999999999999975411 011234566666677888
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHH-----HHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPI-----ARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
+..+.+|||||+++|...+..++..+|++++|+|++++..+.. ...+........ ...|+++|+||+|+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccch
Confidence 8999999999999999999999999999999999988644321 222222222221 235699999999997621
Q ss_pred --CHHHHHHHh----CCCccCCCceeEEEeeeccCCCHHH
Q 030000 138 --SKQALVDQL----GLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 138 --~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
..++..+.+ ..........+++++||++|+|+.+
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 112222211 1111122357899999999999874
No 153
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.91 E-value=1.9e-23 Score=151.77 Aligned_cols=132 Identities=20% Similarity=0.211 Sum_probs=100.7
Q ss_pred ccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCC----------CCCHHHHHHHHHHHhcCCCCC
Q 030000 51 TVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAAD----------RDSVPIARSELHELLMKPSLS 120 (184)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 120 (184)
|.|+....+...++.+.+||++|+++++..|..++++++++|+|+|+++ ..++.....|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4444445556677899999999999999999999999999999999998 889999999999988765567
Q ss_pred CCcEEEEEeCCCcccccC--------------------------------HHHHHHH----h-CC---CccCCCceeEEE
Q 030000 121 GIPLLVLGNKIDKSEALS--------------------------------KQALVDQ----L-GL---ESITDREVCCYM 160 (184)
Q Consensus 121 ~~~iivv~nK~D~~~~~~--------------------------------~~~~~~~----~-~~---~~~~~~~~~~~~ 160 (184)
++|+++++||+|+..... .++.... + .. .....+.+.+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 899999999999853210 1111111 0 00 001123466889
Q ss_pred eeeccCCCHHHHHHHHHHHhhh
Q 030000 161 ISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
|||+++.||+++|+++.+.+.+
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHH
Confidence 9999999999999999888764
No 154
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.91 E-value=2.6e-23 Score=154.19 Aligned_cols=162 Identities=14% Similarity=0.073 Sum_probs=107.0
Q ss_pred HHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCC---CCC--------------------------------CCCc
Q 030000 7 ILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGY---SED--------------------------------MIPT 51 (184)
Q Consensus 7 ~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~---~~~--------------------------------~~~t 51 (184)
+.+++.....+..++|+++|++++|||||+++|+.... ... .+-|
T Consensus 12 i~~~l~~~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiT 91 (434)
T 1zun_B 12 ILAYLGQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGIT 91 (434)
T ss_dssp ----CCSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CC
T ss_pred HHHHHhhcccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcE
Confidence 44455555556779999999999999999999985431 000 1123
Q ss_pred cceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 030000 52 VGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 131 (184)
....+..+......+.+|||||+++|...+..++..+|++++|+|+++....+. ..++...... ...|+++|+||+
T Consensus 92 i~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~~---~~~~iIvviNK~ 167 (434)
T 1zun_B 92 IDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL---GIKHIVVAINKM 167 (434)
T ss_dssp CCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEEECT
T ss_pred EEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEEcC
Confidence 333445566778899999999999999988899999999999999988754433 3333322221 123699999999
Q ss_pred Cccccc--CHHHHH----HHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 132 DKSEAL--SKQALV----DQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 132 D~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
|+.+.. ..++.. +.+..........+++++||++|.|+.++
T Consensus 168 Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 168 DLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 997532 111111 11111111134578999999999999873
No 155
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.91 E-value=1.6e-24 Score=155.71 Aligned_cols=121 Identities=17% Similarity=0.289 Sum_probs=91.3
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCC----------CCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCC
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAA----------DRDSVPIARSELHELLMKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~ 131 (184)
..+.+.+||++|+++++..|..++++++++|+|+|++ +..++.....|+..+.......++|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4688999999999999999999999999999999998 788899999999888776545689999999999
Q ss_pred CcccccC-----------------------HHHHHHHhCC-----------CccCCCceeEEEeeeccCCCHHHHHHHHH
Q 030000 132 DKSEALS-----------------------KQALVDQLGL-----------ESITDREVCCYMISCKDSINIDAVIDWLI 177 (184)
Q Consensus 132 D~~~~~~-----------------------~~~~~~~~~~-----------~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 177 (184)
|+.+... .++..+.... .....+.+.+++|||++++||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854210 1111111110 00002345678999999999999999999
Q ss_pred HHhhh
Q 030000 178 KHSKT 182 (184)
Q Consensus 178 ~~~~~ 182 (184)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 156
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.91 E-value=9.6e-26 Score=169.37 Aligned_cols=160 Identities=19% Similarity=0.162 Sum_probs=114.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEee-cCEEEEEEEcCCccchhHhHHhhccCCCEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIP--TVGFNMRKVTK-GNVTIKLWDLGGQRRFRTMWERYCRGVSAILY 93 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~--t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~ 93 (184)
++.++|+++|++++|||||+++|.+..+.....+ |.......+.. .+..+++|||||++.|...+..+++.+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 3568999999999999999999986654333322 33332333333 34579999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--HHHHHHHhCC-CccCCCceeEEEeeeccCCCHH
Q 030000 94 VVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--KQALVDQLGL-ESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
|+|+++....+....+ ..... .++|+++++||+|+..... .......... ........+++++||++|.|++
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHHHHHHH-HHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 9999987666554433 32322 4789999999999965321 1112222221 1122235689999999999999
Q ss_pred HHHHHHHHHhh
Q 030000 171 AVIDWLIKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~~~ 181 (184)
++++++...++
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999988764
No 157
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.91 E-value=8.9e-24 Score=155.46 Aligned_cols=161 Identities=18% Similarity=0.144 Sum_probs=113.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcC--------CCCC-----------CCCCccceeEEEEeecCEEEEEEEcCCccc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATG--------GYSE-----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~--------~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
.+..++|+++|++++|||||+++|++. .+.. ..+.|.......++..+..+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 356799999999999999999999862 1111 122344455555667788999999999999
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccC-HH----HHHHHhCCCc
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALS-KQ----ALVDQLGLES 150 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~-~~----~~~~~~~~~~ 150 (184)
|...+...+..+|++++|+|+++....+ ...++..... .++| +++++||+|+.+... .+ +..+.+....
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998876544 3444443332 3678 889999999974211 11 1222221111
Q ss_pred cCCCceeEEEeeeccCCC------------------HHHHHHHHHHHhh
Q 030000 151 ITDREVCCYMISCKDSIN------------------IDAVIDWLIKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~------------------i~~l~~~i~~~~~ 181 (184)
......+++++||++|.| +.++++.+.+.++
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 112346899999999987 8888888887664
No 158
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.5e-25 Score=147.62 Aligned_cols=126 Identities=23% Similarity=0.320 Sum_probs=93.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccC----C
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRG----V 88 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~----~ 88 (184)
..+.++|+++|++|||||||++++.+..+.. ...++.+. ......+.+||+||++.+...+..++.+ +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 3567999999999999999999999877643 12222222 2256678999999999887777777665 8
Q ss_pred CEEEEEEeCC-CCCCHHHHHHHHHHHhcCC---CCCCCcEEEEEeCCCcccccCHHHHHHHh
Q 030000 89 SAILYVVDAA-DRDSVPIARSELHELLMKP---SLSGIPLLVLGNKIDKSEALSKQALVDQL 146 (184)
Q Consensus 89 ~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~iivv~nK~D~~~~~~~~~~~~~~ 146 (184)
|++++|+|++ +..++.....|+..++... ...++|+++|+||+|+.+....++..+.+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999998 7778888888877775432 22579999999999998877666655554
No 159
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.91 E-value=8.8e-24 Score=147.12 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=104.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC-CCCCCC---CccceeEEEEeecCEEEEEEEcCCccchh-----------Hh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGG-YSEDMI---PTVGFNMRKVTKGNVTIKLWDLGGQRRFR-----------TM 80 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~-~~~~~~---~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~~ 80 (184)
..+.++|+|+|++|+|||||++++++.. +..... .|.......+...+..+.+|||||+..+. ..
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999999876 343333 34445555677788999999999976542 22
Q ss_pred HHhhccCCCEEEEEEeCCCCCCHHH-HHHHHHHHhcCCCCCCCcEEEEEe-CCCcccccCHHH------------HHHHh
Q 030000 81 WERYCRGVSAILYVVDAADRDSVPI-ARSELHELLMKPSLSGIPLLVLGN-KIDKSEALSKQA------------LVDQL 146 (184)
Q Consensus 81 ~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iivv~n-K~D~~~~~~~~~------------~~~~~ 146 (184)
...+++.+|++++|+|+++...... ...++...... ....|.++++| |+|+... .... ..+.+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 3346789999999999985222111 11222222211 11356666666 9999743 3333 22222
Q ss_pred CCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 147 GLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 147 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+... ..+..+++||++|.|++++|++|.+.+..
T Consensus 176 ~~~~---~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 176 GGRI---CAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTCE---EECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeE---EEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 2110 00111789999999999999999998865
No 160
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.90 E-value=2.9e-23 Score=147.22 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=110.0
Q ss_pred hHHHHHHHHhhhh---ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC------CCc----------------------
Q 030000 3 FLDSILNWLRSLF---FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDM------IPT---------------------- 51 (184)
Q Consensus 3 ~~~~~~~~~~~~~---~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~------~~t---------------------- 51 (184)
+++.+.+.++... ....++|+|+|.+|+|||||+|++++..+.+.. .++
T Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~ 86 (299)
T 2aka_B 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF 86 (299)
T ss_dssp HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCccc
Confidence 4566666666542 235689999999999999999999988763211 121
Q ss_pred ccee-------------------------EEEEee-cCEEEEEEEcCCcc-------------chhHhHHhhccCCCEEE
Q 030000 52 VGFN-------------------------MRKVTK-GNVTIKLWDLGGQR-------------RFRTMWERYCRGVSAIL 92 (184)
Q Consensus 52 ~~~~-------------------------~~~~~~-~~~~~~~~d~~g~~-------------~~~~~~~~~~~~~~~~i 92 (184)
.... ...+.. ....+.+|||||.. .+......+++.++.++
T Consensus 87 tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 166 (299)
T 2aka_B 87 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 166 (299)
T ss_dssp CCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEE
Confidence 0000 000111 13679999999963 34556777888888776
Q ss_pred -EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeeccCCCHH
Q 030000 93 -YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINID 170 (184)
Q Consensus 93 -~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+|+++..+......++..+ . ..+.|+++|+||+|+.+... ..+..+. ..........+++++||++|.|++
T Consensus 167 l~v~d~~~~~~~~~~~~~~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~SA~~~~gi~ 241 (299)
T 2aka_B 167 LAVSPANSDLANSDALKIAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKK 241 (299)
T ss_dssp EEEEESSSCGGGCHHHHHHHHH-C---TTCSSEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCCBCTTSCB
T ss_pred EEEecCCcchhhhHHHHHHHHh-C---CCCCeEEEEEEccccCCCCchHHHHHhC-CcCcCCCCcEEEECCChhhccccc
Confidence 699997654433322333322 2 24789999999999976433 2222211 011111234578999999999999
Q ss_pred HHHHHHHHH
Q 030000 171 AVIDWLIKH 179 (184)
Q Consensus 171 ~l~~~i~~~ 179 (184)
++++++.+.
T Consensus 242 ~l~~~l~~~ 250 (299)
T 2aka_B 242 DITAALAAE 250 (299)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 999998764
No 161
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.90 E-value=3.1e-24 Score=159.09 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=101.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--CCCC-------------------------------CCCCccceeEEEEeecC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG--GYSE-------------------------------DMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|++++|||||+++|+.. .+.. ....|.+.....++..+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46799999999999999999999853 2221 23345566666677888
Q ss_pred EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHH-------HHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIA-------RSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
..+.+|||||+++|...+..++..+|++++|+|+++ .+++.. ...+...... ...|+++++||+|+.+.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCCc
Confidence 999999999999999999999999999999999988 455432 2222212111 22468999999999762
Q ss_pred c----CH----HHHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 137 L----SK----QALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 137 ~----~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
. .. ++..+.+.........++++++||++|+|+.++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 1 11 122222211111122468999999999999743
No 162
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.90 E-value=3.1e-23 Score=149.95 Aligned_cols=157 Identities=24% Similarity=0.272 Sum_probs=105.1
Q ss_pred eeE-EEEEcCCCCCHHHHHHHHhcCCCCC--CCCCccceeEEEEeecCEEEEEEEcCCcc---------chhHhHHhhcc
Q 030000 19 EME-LSLIGLQNAGKTSLVNTIATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQR---------RFRTMWERYCR 86 (184)
Q Consensus 19 ~~~-i~v~G~~~~GKstli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~d~~g~~---------~~~~~~~~~~~ 86 (184)
.++ |+++|.+|+|||||+|++.+..... ...+|.+.....+...+..+.+|||+|.. .+..... .+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence 455 9999999999999999999876532 23456666677777778899999999962 2333333 478
Q ss_pred CCCEEEEEEeCCCCC--CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH--HHH----HHhCCCccCCCceeE
Q 030000 87 GVSAILYVVDAADRD--SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ--ALV----DQLGLESITDREVCC 158 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~----~~~~~~~~~~~~~~~ 158 (184)
.+|++++|+|++++. .......+ ..++......+.|+++|+||+|+.+....+ ... ..+. ....++
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~-~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~-----~~~~~~ 330 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSS-FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELY-----SPIFDV 330 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHH-HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHC-----SCEEEE
T ss_pred hCCEEEEEEECCCCcchHHHHHHHH-HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhc-----CCCCcE
Confidence 899999999998764 33333222 223333333578999999999997643111 111 2220 123468
Q ss_pred EEeeeccCCCHHHHHHHHHHHhhh
Q 030000 159 YMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 159 ~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+++||++|.|+++++++|.+.+..
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHhcc
Confidence 999999999999999999987754
No 163
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=6.5e-24 Score=158.31 Aligned_cols=153 Identities=22% Similarity=0.269 Sum_probs=106.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCC--------ccchhHhHHhhcc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGG--------QRRFRTMWERYCR 86 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g--------~~~~~~~~~~~~~ 86 (184)
...+|+++|.+|||||||+|++.+..+. ...+.|.......+...+..+.+||||| ++++......+++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 3579999999999999999999976543 2223344455566667788999999999 7778888888999
Q ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccC
Q 030000 87 GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDS 166 (184)
Q Consensus 87 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.+|++++|+|..+. +.....++..++.. .++|+++|+||+|+.+... ...+.. .......+++||++|
T Consensus 102 ~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~--~~~e~~-----~lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 102 EADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIYDFY-----SLGFGEPYPISGTHG 169 (456)
T ss_dssp HCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSG-----GGSSSSEEECCTTTC
T ss_pred hCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhhh--hHHHHH-----HcCCCceEEeecccc
Confidence 99999999998654 44455666666654 5799999999999854321 111111 111124679999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 030000 167 INIDAVIDWLIKHSKT 182 (184)
Q Consensus 167 ~~i~~l~~~i~~~~~~ 182 (184)
.|+.++++++.+.+..
T Consensus 170 ~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TTHHHHHHHHHTTGGG
T ss_pred cchHHHHHHHHhhccc
Confidence 9999999999887753
No 164
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.90 E-value=1.7e-23 Score=146.68 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=90.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CC-------CCccceeEEEEe--e--cCEEEEEEEcCCcc-------chh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSE-DM-------IPTVGFNMRKVT--K--GNVTIKLWDLGGQR-------RFR 78 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~-------~~t~~~~~~~~~--~--~~~~~~~~d~~g~~-------~~~ 78 (184)
..++|+++|.+|+|||||+|++++.+... .+ .+|.+....... . ..+.+++|||||.. .+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 46899999999999999999988665432 22 455655544432 2 23689999999973 222
Q ss_pred HhH-------Hhhcc-------------CCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC
Q 030000 79 TMW-------ERYCR-------------GVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 79 ~~~-------~~~~~-------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 138 (184)
... ..++. ++|+++++++...... ......+...+.. ++|+++|+||+|+....+
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~-~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL-KPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSC-CHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCC-CHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence 222 22222 3679999998765332 2333333333333 799999999999976544
Q ss_pred HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 139 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.....+.+.. ......++++.+|+++++|+++++++|.+.++
T Consensus 162 ~~~~~~~i~~-~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 162 CQQFKKQIMK-EIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHH-HHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHH-HHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 4333332211 11123456888999999999999999988764
No 165
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.90 E-value=3.7e-23 Score=157.58 Aligned_cols=159 Identities=22% Similarity=0.267 Sum_probs=108.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCCC----CCCCccceeEEEEe----------------ecCEEEEEEEcCCccch
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYSE----DMIPTVGFNMRKVT----------------KGNVTIKLWDLGGQRRF 77 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~~----~~~~t~~~~~~~~~----------------~~~~~~~~~d~~g~~~~ 77 (184)
+.++|+++|++++|||||++++++..+.. ...++.+....... .....+++|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 56899999999999999999998654322 22234444433221 11236999999999999
Q ss_pred hHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC--------------H----
Q 030000 78 RTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--------------K---- 139 (184)
Q Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--------------~---- 139 (184)
...+...++.+|++++|+|+++.-..+....+ ..+.. .++|+++++||+|+..... .
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~ 158 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEAL-NILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ 158 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-HHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-HHHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHHH
Confidence 98888888999999999999985433333222 22222 4789999999999964211 0
Q ss_pred H-------HHHHHh---CCCc-------cCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 140 Q-------ALVDQL---GLES-------ITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 140 ~-------~~~~~~---~~~~-------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
+ +..+.+ ++.. .....++++++||++|.|+++++++|...++
T Consensus 159 ~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 111111 1100 0134568999999999999999999998765
No 166
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.90 E-value=4.5e-23 Score=142.32 Aligned_cols=166 Identities=14% Similarity=0.104 Sum_probs=101.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEeecCEEEEEEEcCCc--------cchhHhHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI----PTVGFNMRKVTKGNVTIKLWDLGGQ--------RRFRTMWER 83 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~d~~g~--------~~~~~~~~~ 83 (184)
..+.++|+++|.+|+|||||+|++++........ .|...........+..+.+|||||. +++......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 3568999999999999999999999877643322 4455556667788899999999996 444343433
Q ss_pred hc----cCCCEEEEEEeCCCCCCHH-HHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHH-----hC-CCccC
Q 030000 84 YC----RGVSAILYVVDAADRDSVP-IARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQ-----LG-LESIT 152 (184)
Q Consensus 84 ~~----~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~-----~~-~~~~~ 152 (184)
++ +.+|++++|+|+++..... ....++..... ....+.|+++++||.|+... ..++.... +. +....
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG-EDVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC-hhhhccEEEEEEchHhcCCC-CHHHHHhhcccHHHHHHHHHc
Confidence 33 8999999999997522111 11122222211 11236899999999999653 22222211 00 00001
Q ss_pred CCceeEEEeeec---cCCCHHHHHHHHHHHhhhc
Q 030000 153 DREVCCYMISCK---DSINIDAVIDWLIKHSKTA 183 (184)
Q Consensus 153 ~~~~~~~~~Sa~---~~~~i~~l~~~i~~~~~~~ 183 (184)
...+.++..++. .+.|+.++++.|.+.+..+
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 112223333332 2689999999999988753
No 167
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=2.1e-22 Score=138.50 Aligned_cols=158 Identities=14% Similarity=0.113 Sum_probs=101.1
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEeecCEEEEEEEcCCc-----------cchhH
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMI----PTVGFNMRKVTKGNVTIKLWDLGGQ-----------RRFRT 79 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~d~~g~-----------~~~~~ 79 (184)
+....++|+++|++|+|||||++++++..+..... .|.......+...+..+.+|||||. ..+..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34467999999999999999999999887754433 3444555567778899999999993 34555
Q ss_pred hHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccccCHH-----------HHHHHhC
Q 030000 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQ-----------ALVDQLG 147 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~-----------~~~~~~~ 147 (184)
.+...++++|++++|+|+++.... ...++..+..... ....|+++|+||+|+......+ ++.+.++
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 555667789999999999765442 2233333321111 1235999999999987654333 2222222
Q ss_pred CCccCCCceeEEEeeec-----cCCCHHHHHHHHHHHhhh
Q 030000 148 LESITDREVCCYMISCK-----DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~-----~~~~i~~l~~~i~~~~~~ 182 (184)
..++.++.. ++.++.++++.+.+.+..
T Consensus 183 --------~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 183 --------DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp --------SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 124445444 336899999999887765
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.89 E-value=9.9e-25 Score=162.68 Aligned_cols=157 Identities=23% Similarity=0.259 Sum_probs=108.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYV 94 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 94 (184)
++..+|+++|++++|||||++++....+.... +.|.......+...+..+++|||||++.|...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 35689999999999999999999865443322 2233333334455667899999999999999888889999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCC----ccCCCceeEEEeeeccCCCHH
Q 030000 95 VDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE----SITDREVCCYMISCKDSINID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~i~ 170 (184)
+|+++....+.... +..... .++|+++++||+|+..... ++....+... ......++++++||++|.|++
T Consensus 82 Vda~~g~~~qT~e~-l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMPQTIEA-IQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCTTTHHH-HHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccHHHHHH-HHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 99987433222222 222211 4789999999999965321 1111111110 111124689999999999999
Q ss_pred HHHHHHHHH
Q 030000 171 AVIDWLIKH 179 (184)
Q Consensus 171 ~l~~~i~~~ 179 (184)
++++++...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998753
No 169
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.89 E-value=3.1e-22 Score=150.97 Aligned_cols=115 Identities=21% Similarity=0.272 Sum_probs=84.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC--CC----------------------CCCCCccceeEEEEeecCEEEEEEEcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG--YS----------------------EDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~----------------------~~~~~t~~~~~~~~~~~~~~~~~~d~~ 72 (184)
.+..+|+++|++|+|||||+++++... .. ...+.|.......+.+.++.+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 467899999999999999999998531 10 011123333445577888999999999
Q ss_pred CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
|+.+|......+++.+|++|+|+|+.+..... ....+. ... ..++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~-~~~---~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLME-VTR---LRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHH-HHT---TTTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHH-HHH---HcCCCEEEEEcCcCCccc
Confidence 99999988889999999999999998764432 222222 222 257899999999999654
No 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.1e-23 Score=161.18 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=104.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------------------CCCccceeEEEEeecC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSED---------------------------------MIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~---------------------------------~~~t~~~~~~~~~~~~ 63 (184)
+..++|+++|++++|||||+++|++...... .+.|.......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 4579999999999999999999986532111 2345666666777888
Q ss_pred EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC---CH---HHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SV---PIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
..+.+|||||++++...+..++..+|++|+|+|++++. ++ ......+. ..... ...|+++|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~-~~~~l--gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSL--GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHH-HHHTT--TCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHH-HHHHc--CCCeEEEEEecccccchh
Confidence 99999999999999999999999999999999997631 11 11222222 22221 224599999999997621
Q ss_pred --CHH----HHHHHhCCCccCCCceeEEEeeeccCCCHHHH
Q 030000 138 --SKQ----ALVDQLGLESITDREVCCYMISCKDSINIDAV 172 (184)
Q Consensus 138 --~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 172 (184)
..+ ++...+..........+++++||++|.|+.++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 111 11111111111123468999999999999865
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.88 E-value=2.7e-22 Score=159.92 Aligned_cols=160 Identities=17% Similarity=0.103 Sum_probs=110.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC-------CC-----------CCCCCccceeEEEEeecCEEEEEEEcCCccchh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG-------YS-----------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR 78 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~-------~~-----------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 78 (184)
+..++|+++|++++|||||+++|.+.. +. ...+.|.......++..+..+.+|||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 457999999999999999999998631 00 112223333344566677899999999999999
Q ss_pred HhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccccCH-----HHHHHHhCCCccC
Q 030000 79 TMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKSEALSK-----QALVDQLGLESIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~-----~~~~~~~~~~~~~ 152 (184)
..+...+..+|++|+|+|+++....+. ..++..+.. .++| +++++||+|+.+.... ++..+.+......
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 988899999999999999988654443 333333322 3678 7899999999752211 1222222111122
Q ss_pred CCceeEEEeeeccC--------CCHHHHHHHHHHHhh
Q 030000 153 DREVCCYMISCKDS--------INIDAVIDWLIKHSK 181 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~--------~~i~~l~~~i~~~~~ 181 (184)
...++++++||++| .|+.++++.|.+.++
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 23568999999999 468999999988664
No 172
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.88 E-value=3.7e-23 Score=154.35 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=90.3
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcC--CCC-------------------------------CCCCCccceeEEEEee
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATG--GYS-------------------------------EDMIPTVGFNMRKVTK 61 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~--~~~-------------------------------~~~~~t~~~~~~~~~~ 61 (184)
..+..++|+++|++++|||||+++|+.. .+. ...+.|++.....+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 3466799999999999999999999741 111 1233455555556777
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC---CHH---HHHHHHHHHhcCCCCCCCc-EEEEEeCCCcc
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SVP---IARSELHELLMKPSLSGIP-LLVLGNKIDKS 134 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~ 134 (184)
.+..+.+|||||+++|...+...+..+|++|+|+|+++.. +|. .....+.... . .++| +++++||+|+.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~---~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-T---QGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-H---TTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-H---cCCCEEEEEEECccCC
Confidence 7899999999999999998888999999999999998752 121 1112222121 1 3677 99999999996
Q ss_pred ccc-C---HH----HHHHHhCCC-ccC-CCceeEEEeeeccCCCHHHHH
Q 030000 135 EAL-S---KQ----ALVDQLGLE-SIT-DREVCCYMISCKDSINIDAVI 173 (184)
Q Consensus 135 ~~~-~---~~----~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~i~~l~ 173 (184)
... + .+ +..+.+... .+. ...++++++||++|.|+.+++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 421 1 11 122211110 111 125689999999999998754
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.88 E-value=8.3e-23 Score=152.15 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=103.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--CCCC-------------------------------CCCCccceeEEEEeecC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG--GYSE-------------------------------DMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~ 63 (184)
+..++|+++|++++|||||+++|+.. .+.. ..+.|.+.....++..+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 46799999999999999999999853 2211 13456666666778888
Q ss_pred EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC---CHH---HHHHHHHHHhcCCCCCCCc-EEEEEeCCCcccc
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SVP---IARSELHELLMKPSLSGIP-LLVLGNKIDKSEA 136 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~ 136 (184)
..+.+|||||+++|...+...+..+|++++|+|+++.. +|. .....+... .. .++| +++++||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEccccccC
Confidence 99999999999999999999999999999999997642 110 222222222 21 3565 8999999999731
Q ss_pred --cCHHHHHHHh----CCCccCCCceeEEEeeeccCCCHHH
Q 030000 137 --LSKQALVDQL----GLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 137 --~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
...++..+.+ .........++++++||++|+|+.+
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 1111222211 1111111246899999999999874
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.88 E-value=2.7e-21 Score=150.21 Aligned_cols=115 Identities=20% Similarity=0.172 Sum_probs=88.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC--CC------CC------------CCCCccceeEEEEeecCEEEEEEEcCCccc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG--GY------SE------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~--~~------~~------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 76 (184)
.+..+|+++|++|+|||||+++++.. .+ .. ....|.......+.+.++.+++|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 56789999999999999999999831 11 00 234566666666778899999999999999
Q ss_pred hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 77 FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
|...+..+++.+|++++|+|+++.........|.. ... .++|+++++||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCcccC
Confidence 99999999999999999999998888776655443 322 37999999999998754
No 175
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.87 E-value=7.2e-24 Score=161.87 Aligned_cols=161 Identities=18% Similarity=0.137 Sum_probs=90.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCC-------------------------------CC--CCCCCccceeEEEEeec
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGG-------------------------------YS--EDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~-------------------------------~~--~~~~~t~~~~~~~~~~~ 62 (184)
.+..++|+++|++++|||||+++|+... .. ...+.|.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 4567899999999999999999996311 00 01223445555556667
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC---CH---HHHHHHHHHHhcCCCCCCCc-EEEEEeCCCccc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD---SV---PIARSELHELLMKPSLSGIP-LLVLGNKIDKSE 135 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~ 135 (184)
+..+.+|||||+++|...+...+..+|++|+|+|++++. .+ ......+... .. .++| +++|+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~-~~---lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLL-RA---LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHH-HH---SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHH-HH---cCCCeEEEEEecccccc
Confidence 788999999999999888888899999999999998643 11 1112222222 22 2455 899999999975
Q ss_pred c--cCH----HHHHHHh-CCCccCCCceeEEEeeeccCCCHH--------------HHHHHHHHHh
Q 030000 136 A--LSK----QALVDQL-GLESITDREVCCYMISCKDSINID--------------AVIDWLIKHS 180 (184)
Q Consensus 136 ~--~~~----~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~--------------~l~~~i~~~~ 180 (184)
. ... .++.+.+ .........++++++||++|.|+. .+++.|...+
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 2 111 2233333 222222345689999999999998 6888776654
No 176
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.87 E-value=1.8e-21 Score=138.99 Aligned_cols=176 Identities=18% Similarity=0.155 Sum_probs=107.0
Q ss_pred hHHHHHHHHhhhhc--cceeEEEEEcCCCCCHHHHHHHHhcCCCCCC-CC-Cccce---eEEE-----------------
Q 030000 3 FLDSILNWLRSLFF--KQEMELSLIGLQNAGKTSLVNTIATGGYSED-MI-PTVGF---NMRK----------------- 58 (184)
Q Consensus 3 ~~~~~~~~~~~~~~--~~~~~i~v~G~~~~GKstli~~~~~~~~~~~-~~-~t~~~---~~~~----------------- 58 (184)
+++.+.+.+..+.. ...++|+|+|.+|+|||||+|++++..+.+. .. .|... ....
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~ 85 (315)
T 1jwy_B 6 VINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFL 85 (315)
T ss_dssp HHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEES
T ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhh
Confidence 45566666655432 3568999999999999999999998775221 11 01000 0000
Q ss_pred ----------------------------------------EeecCEEEEEEEcCCccc-------------hhHhHHhhc
Q 030000 59 ----------------------------------------VTKGNVTIKLWDLGGQRR-------------FRTMWERYC 85 (184)
Q Consensus 59 ----------------------------------------~~~~~~~~~~~d~~g~~~-------------~~~~~~~~~ 85 (184)
.......+.+|||||... +......++
T Consensus 86 ~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (315)
T 1jwy_B 86 HKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI 165 (315)
T ss_dssp SSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH
Confidence 111335799999999753 445667788
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeec
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCK 164 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+++|++++|+|..+..........+...+.. .+.|+++|+||+|+..... ..+..+. .........+++..+|+.
T Consensus 166 ~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~sa~ 241 (315)
T 1jwy_B 166 KKQNAIIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTG-RVIPLTLGFIGVINRSQE 241 (315)
T ss_dssp HSTTEEEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTT-SSSCCTTCEEECCCCCHH
T ss_pred cCCCeEEEEEEecCcchhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhC-CCccCCCCeEEEecCChh
Confidence 9999999999974332111111122223332 4789999999999976543 1222221 011111233455666777
Q ss_pred c---CCCHHHHHHHHHHHhhh
Q 030000 165 D---SINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ~---~~~i~~l~~~i~~~~~~ 182 (184)
+ +.|+.++++.+.+.++.
T Consensus 242 ~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 242 DIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp HHSSSCCHHHHHHHHHHHHHT
T ss_pred hhccCCCHHHHHHHHHHHHhC
Confidence 7 88999999998887754
No 177
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.87 E-value=4.3e-21 Score=149.16 Aligned_cols=163 Identities=17% Similarity=0.168 Sum_probs=107.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCCccc-ee----------EEEE------------------------
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSE-DMIPTVG-FN----------MRKV------------------------ 59 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~-~~~~t~~-~~----------~~~~------------------------ 59 (184)
....++|+|+|.+|+|||||+|+|++....+ ...++.. .. ...+
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 3567999999999999999999999876432 2223221 00 0000
Q ss_pred --------------------eecC----EEEEEEEcCCccc---hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHH
Q 030000 60 --------------------TKGN----VTIKLWDLGGQRR---FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHE 112 (184)
Q Consensus 60 --------------------~~~~----~~~~~~d~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 112 (184)
.... ..+.+|||||... .......+++++|++++|+|++++.+......+...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 0000 3589999999665 334566788999999999999988777665544322
Q ss_pred HhcCCCCCCCcEEEEEeCCCccccc-----CHHH-------HH----HHhCCC----ccCCCceeEEEeeec--------
Q 030000 113 LLMKPSLSGIPLLVLGNKIDKSEAL-----SKQA-------LV----DQLGLE----SITDREVCCYMISCK-------- 164 (184)
Q Consensus 113 ~~~~~~~~~~~iivv~nK~D~~~~~-----~~~~-------~~----~~~~~~----~~~~~~~~~~~~Sa~-------- 164 (184)
+ .. .+.|+++|+||+|+.... +.++ +. ..+... .......+++++||+
T Consensus 226 l-~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 I-KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp T-TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred H-Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 2 22 367899999999987542 1101 11 111110 001223469999999
Q ss_pred ------cCCCHHHHHHHHHHHhhh
Q 030000 165 ------DSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 165 ------~~~~i~~l~~~i~~~~~~ 182 (184)
+|.|++++++.+.+.+..
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred CchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 178
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.87 E-value=2.2e-21 Score=130.89 Aligned_cols=160 Identities=20% Similarity=0.190 Sum_probs=99.0
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecCEEEEEEEcCCccc----------hhHhH
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQRR----------FRTMW 81 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~~----------~~~~~ 81 (184)
+...+..+|+++|++|||||||++++.+..+.....++.|... ..+...+ .+.+||+||... +....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 4556778999999999999999999987664333333433221 1222222 578999999742 23333
Q ss_pred Hhhc---cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH----HHHHhCCCccCCC
Q 030000 82 ERYC---RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA----LVDQLGLESITDR 154 (184)
Q Consensus 82 ~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~ 154 (184)
..++ ..++++++++|+.++.+.... .+..++.. .+.|+++++||+|+.+....+. ....+.. ...
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---~~~ 171 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FNG 171 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GCS
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---cCC
Confidence 3343 568999999999887665421 12222222 4689999999999876432222 2222211 112
Q ss_pred ceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 155 EVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
...++++|++++.|+++++++|.+.+.+
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 3568899999999999999999887654
No 179
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.86 E-value=2.1e-22 Score=145.79 Aligned_cols=158 Identities=16% Similarity=0.238 Sum_probs=81.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--------CCccceeEEEE--eec--CEEEEEEEcCCc-------cc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDM--------IPTVGFNMRKV--TKG--NVTIKLWDLGGQ-------RR 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~--------~~t~~~~~~~~--~~~--~~~~~~~d~~g~-------~~ 76 (184)
...++|+|+|++|+|||||++++++.... ... .+|.+.....+ ... ...+++|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45689999999999999999998765432 221 13444443332 222 357999999998 55
Q ss_pred hhHhHH-------hhccCC-------------CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 77 FRTMWE-------RYCRGV-------------SAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 77 ~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
+...+. .+++.+ ++++|+++.. ..++......+...+. .++|+++|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 555544 444332 3455555542 4456655544433332 57999999999999765
Q ss_pred cCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 137 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.....+.+... ......+++++++||++|.+ ++.+.++.+.+.
T Consensus 190 ~ev~~~k~~i~-~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 190 KERERLKKRIL-DEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHHH-HHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 43332212221 11223356799999999998 777666666553
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.86 E-value=1.6e-20 Score=145.32 Aligned_cols=115 Identities=20% Similarity=0.125 Sum_probs=86.3
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCCCCC--------------------CCCCccceeEEEEeecCEEEEEEEcCCc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGGYSE--------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~--------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~ 74 (184)
...+..+|+++|+.|+|||||++++++..... ....|.......+....+.+++|||||+
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 34567899999999999999999998432210 0112333444556678899999999999
Q ss_pred cchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 75 RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
.++......+++.+|++++|+|+.+....... .++..... .++|+++++||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----ccCCEEEEecCCchh
Confidence 99999999999999999999999876554433 33333332 379999999999987
No 181
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.86 E-value=2.3e-20 Score=145.05 Aligned_cols=116 Identities=22% Similarity=0.230 Sum_probs=88.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc--CCCCC------------------CCCCccceeEEEEeecCEEEEEEEcCCcc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT--GGYSE------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 75 (184)
.++..+|+++|++|+|||||+++++. +.+.. ....|.......+...++.+++|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 45678999999999999999999984 22110 12334455555677788999999999999
Q ss_pred chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 76 RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
++...+..+++.+|++++|+|+.+.........|. .+.. .++|+++++||+|+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----cCCCEEEEEECCCcccc
Confidence 99998999999999999999999877776554443 3332 37899999999999764
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.86 E-value=5e-20 Score=143.28 Aligned_cols=115 Identities=17% Similarity=0.100 Sum_probs=85.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC--CCC------------------CCCCccceeEEEEeecC-------EEEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG--YSE------------------DMIPTVGFNMRKVTKGN-------VTIKLW 69 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~--~~~------------------~~~~t~~~~~~~~~~~~-------~~~~~~ 69 (184)
.+..+|+|+|+.|+|||||+++|+... +.. ....|.......+.+.+ +.+++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 456899999999999999999997421 110 12234444444455555 899999
Q ss_pred EcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 70 DLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 70 d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
||||+.+|...+..+++.+|++|+|+|+++.........| ..... .++|+++++||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCEEEEEeCCCcccc
Confidence 9999999999999999999999999999987655544333 22222 47899999999998653
No 183
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.85 E-value=1.5e-20 Score=130.91 Aligned_cols=117 Identities=18% Similarity=0.114 Sum_probs=81.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC--CC-CCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhc---------
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS--ED-MIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYC--------- 85 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~--~~-~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~--------- 85 (184)
+.++|+++|++|+|||||++++++.... .. ...|.......+...+..+.+|||||+.++......++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~ 114 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVN 114 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhc
Confidence 6799999999999999999999987742 22 22355555666778889999999999877654333322
Q ss_pred cCCCEEEEEEeCCCCCCHHHH-HHHHHHHhcCCCC-CCCcEEEEEeCCCccc
Q 030000 86 RGVSAILYVVDAADRDSVPIA-RSELHELLMKPSL-SGIPLLVLGNKIDKSE 135 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~-~~~~iivv~nK~D~~~ 135 (184)
.++|++++|++++... +... ..++..+...... ...|+++|+||+|+.+
T Consensus 115 ~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 115 RTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp CEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred CCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 2689999999987654 4433 3444444322111 1248999999999853
No 184
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.84 E-value=9.3e-20 Score=138.09 Aligned_cols=115 Identities=20% Similarity=0.262 Sum_probs=87.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc-------------CC-----------CCCCCCCccceeEEEEeecCEEEEEEEcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT-------------GG-----------YSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~-------------~~-----------~~~~~~~t~~~~~~~~~~~~~~~~~~d~~ 72 (184)
.+.-+|+|+|+.++|||||..+|+. +. .....+-|+......+.++++.++++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 3567899999999999999999971 10 11223346666667788999999999999
Q ss_pred CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
|+.+|.......++-+|++|+|+|+...-..+... .|....+ .++|.++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~-v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRK-LMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHH-HHHHHHH----hCCceEEEEecccchhc
Confidence 99999999999999999999999998765554433 3344444 48999999999997553
No 185
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.83 E-value=2.1e-20 Score=135.30 Aligned_cols=170 Identities=16% Similarity=0.178 Sum_probs=102.7
Q ss_pred hHHHHHHHHhhhh---ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC------CCcc---------------------
Q 030000 3 FLDSILNWLRSLF---FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDM------IPTV--------------------- 52 (184)
Q Consensus 3 ~~~~~~~~~~~~~---~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~------~~t~--------------------- 52 (184)
+++.+.+.++... .-..++|+|+|.+|+|||||+|++++..+.+.. .++.
T Consensus 12 ~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~ 91 (353)
T 2x2e_A 12 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKF 91 (353)
T ss_dssp HHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCccc
Confidence 4455666665542 224589999999999999999999987763211 1110
Q ss_pred ----------------------cee----EEEEee-cCEEEEEEEcCCcc-------------chhHhHHhhccCCCEE-
Q 030000 53 ----------------------GFN----MRKVTK-GNVTIKLWDLGGQR-------------RFRTMWERYCRGVSAI- 91 (184)
Q Consensus 53 ----------------------~~~----~~~~~~-~~~~~~~~d~~g~~-------------~~~~~~~~~~~~~~~~- 91 (184)
++. ...+.. ....+.+|||||.. .+......++.+.+.+
T Consensus 92 tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 171 (353)
T 2x2e_A 92 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 171 (353)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEE
Confidence 000 001111 14679999999953 3455666777666654
Q ss_pred EEEEeCCCCCCHHHHHHH-HHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhCCCccCCCceeEEEeeeccCCCH
Q 030000 92 LYVVDAADRDSVPIARSE-LHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLGLESITDREVCCYMISCKDSINI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 169 (184)
++|.|++. .+...... +...+. ..+.|+++|+||+|+.+... .....+. ..........+++++||++|.|+
T Consensus 172 L~v~~a~~--~~~~~~~~~i~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~l~~~~~~v~~~SA~~~~~i 245 (353)
T 2x2e_A 172 LAVSPANS--DLANSDALKVAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGK 245 (353)
T ss_dssp EEEEETTS--CGGGCHHHHHHHHHC---TTCTTEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCHHHHHTT
T ss_pred EEEecCCC--ccchhHHHHHHHHhC---cCCCceEEEeccccccCcchhHHHHHhC-CcccccCCceEEEeCCccccccc
Confidence 44666643 23222211 222222 35789999999999976433 2222221 11111123457889999999999
Q ss_pred HHHHHHHHH
Q 030000 170 DAVIDWLIK 178 (184)
Q Consensus 170 ~~l~~~i~~ 178 (184)
+++++++.+
T Consensus 246 ~~l~~~l~~ 254 (353)
T 2x2e_A 246 KDITAALAA 254 (353)
T ss_dssp CCHHHHHHH
T ss_pred ccHHHHHHH
Confidence 999998876
No 186
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.83 E-value=5.8e-19 Score=123.39 Aligned_cols=119 Identities=14% Similarity=0.047 Sum_probs=80.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeecCEEEEEEEcCCccchhH-------hHHhh--
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT-------MWERY-- 84 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~-- 84 (184)
.+.++|+++|.+|+|||||+|++++..+. .....|.......+...+..+.+|||||+.++.. .+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 35799999999999999999999987752 1222343444455677889999999999876542 12222
Q ss_pred ccCCCEEEEEEeCCCCCCHHHHH-HHHHHHhcCCC-CCCCcEEEEEeCCCcccc
Q 030000 85 CRGVSAILYVVDAADRDSVPIAR-SELHELLMKPS-LSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 85 ~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~~iivv~nK~D~~~~ 136 (184)
...+|++++|+|++.. ++.... .++..+..... ....|+++|+||+|+.+.
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2468999999998654 344333 44444432211 112699999999998654
No 187
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.82 E-value=1.6e-19 Score=132.23 Aligned_cols=158 Identities=23% Similarity=0.243 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEeecC-EEEEEEEcCCccch-------hHhHHhhccCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQRRF-------RTMWERYCRGVS 89 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~-------~~~~~~~~~~~~ 89 (184)
..|+++|++|||||||++++.+.... .....|.......+...+ ..+.+||+||..+. .......++.++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 45889999999999999999876432 112234444455555554 78999999997431 112233456799
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCcccccCHHHHHHHhCCCccCCCceeEEEeeeccCCC
Q 030000 90 AILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSEALSKQALVDQLGLESITDREVCCYMISCKDSIN 168 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
.++.++|++ ..++..+..+..+...... ....|.++++||+|+......+.+.+.+. ....+++.+||++++|
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTCTT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----hcCCeEEEEECCCccC
Confidence 999999998 6667777666665543311 13578999999999876422233333321 1234799999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030000 169 IDAVIDWLIKHSKTA 183 (184)
Q Consensus 169 i~~l~~~i~~~~~~~ 183 (184)
+++++++|.+.+.+.
T Consensus 312 i~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 312 LPALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988654
No 188
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.80 E-value=1.6e-19 Score=130.66 Aligned_cols=109 Identities=13% Similarity=0.076 Sum_probs=72.6
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHH
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQA 141 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~ 141 (184)
.++.+.+|||||... .....+..+|++++|+|+...+....+. ....+.|.++|+||+|+.+......
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHH
Confidence 468899999999543 2233458899999999987654442211 1123469999999999975433322
Q ss_pred ----HHHHhCCCcc--CCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 142 ----LVDQLGLESI--TDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 142 ----~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+.+.+..... .....+++.+||++|+|+++++++|.+.+..
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 2222211100 1123579999999999999999999988753
No 189
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.80 E-value=2.5e-19 Score=130.00 Aligned_cols=150 Identities=16% Similarity=0.196 Sum_probs=95.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccc--e------------------------------------------
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVG--F------------------------------------------ 54 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~--~------------------------------------------ 54 (184)
-.+|+|+|++|||||||++++.+..+.+....++. .
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 45999999999999999999998776322221110 0
Q ss_pred -------------eEEEEeecCEEEEEEEcCCccch-------------hHhHHhhccCCCEEEEEEeCCCCCCHHHHHH
Q 030000 55 -------------NMRKVTKGNVTIKLWDLGGQRRF-------------RTMWERYCRGVSAILYVVDAADRDSVPIARS 108 (184)
Q Consensus 55 -------------~~~~~~~~~~~~~~~d~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 108 (184)
...........+.+|||||..++ ......+++++|++++|+|..+...... .
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--~ 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--D 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--H
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--H
Confidence 00001112346899999997765 5667788999999999998765443321 1
Q ss_pred HHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHH
Q 030000 109 ELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 109 ~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 175 (184)
++ .+.......+.|+++|+||+|+.+.... ....+.. ......+++.+|++++.++++.++.
T Consensus 192 ~~-~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AI-KISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGR----SFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HH-HHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTS----SSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HH-HHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCc----cccccCCeEEEEECChHHhccCCCH
Confidence 11 1223333357899999999999764321 2222211 1223456888999998888765544
No 190
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.79 E-value=3.5e-19 Score=140.96 Aligned_cols=114 Identities=20% Similarity=0.221 Sum_probs=86.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC------------CC------CCCCCccceeEEEEee----------------c
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG------------YS------EDMIPTVGFNMRKVTK----------------G 62 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~------------~~------~~~~~t~~~~~~~~~~----------------~ 62 (184)
.+..+|+|+|+.++|||||+++++... +. .....|+......+.+ .
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 467899999999999999999998531 10 0112244433333333 2
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
++.+++|||||+.+|...+..+++.+|++|+|+|+.+..+++....|.. ... .++|+++++||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG----ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH----cCCCeEEEEECCCcch
Confidence 6889999999999999999999999999999999999888887654443 322 4789999999999864
No 191
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=113.91 Aligned_cols=111 Identities=17% Similarity=0.254 Sum_probs=86.9
Q ss_pred CCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHH---HHHhcCCC-CCCCcEEEEEeCC-CcccccCHHHHHHHh
Q 030000 72 GGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSEL---HELLMKPS-LSGIPLLVLGNKI-DKSEALSKQALVDQL 146 (184)
Q Consensus 72 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~~iivv~nK~-D~~~~~~~~~~~~~~ 146 (184)
+||..++..|..|++++|++|||+|++|.+.++ ....+ ..++.... ..++|++|++||. |+.......++.+.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L 188 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 188 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence 379999999999999999999999999987765 55444 33343332 3689999999995 788888899999999
Q ss_pred CCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhhcC
Q 030000 147 GLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 184 (184)
Q Consensus 147 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 184 (184)
++... .+.+.+..|||++|+|+.+.++|+.+.+.+++
T Consensus 189 ~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 189 HLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp TGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred CCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 98876 48999999999999999999999999887653
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.77 E-value=9e-19 Score=118.96 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=94.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc----------------ceeEEEE------------------eec
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV----------------GFNMRKV------------------TKG 62 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~----------------~~~~~~~------------------~~~ 62 (184)
.+..+|+++|.+|+|||||++++...........++ +.....+ ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 456789999999999999999998542111000000 1111111 123
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--cCHH
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LSKQ 140 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~ 140 (184)
++.+.+|||+|+..... .+....+.+++|+|+.+.... ...+. .. .+.|+++++||+|+.+. ...+
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~-~~------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHP-EI------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCH-HH------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhh-hh------hhcCCEEEEecccCCcchhhHHH
Confidence 56789999999521110 111246789999998765432 11111 11 25789999999998653 2444
Q ss_pred HHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 141 ALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
+..+.+... ....+++++||++|.|++++++++.+.+..
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 444433211 234579999999999999999999987754
No 193
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=4e-19 Score=125.75 Aligned_cols=159 Identities=17% Similarity=0.257 Sum_probs=76.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC-CCCCCC--------CCccceeEEE--E--eecCEEEEEEEcCCc-------cc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG-GYSEDM--------IPTVGFNMRK--V--TKGNVTIKLWDLGGQ-------RR 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~-~~~~~~--------~~t~~~~~~~--~--~~~~~~~~~~d~~g~-------~~ 76 (184)
.-.++|+++|++|+|||||++++++. .++... .++....... + ......+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34689999999999999999998765 333221 1222211111 1 123467999999997 44
Q ss_pred hhHhHH-------hhccC-------------CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc
Q 030000 77 FRTMWE-------RYCRG-------------VSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA 136 (184)
Q Consensus 77 ~~~~~~-------~~~~~-------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 136 (184)
+..... .+++. +++++++.+++. .+++.....+...+. .++|+++|+||+|+...
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l~----~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHHT----TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHHH----hcCCEEEEEEeCCCCCH
Confidence 444433 33322 234555555432 234444322222221 36799999999999754
Q ss_pred cCHHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 137 LSKQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
.+.....+... ......+++++++||++| |++++|+++.+.+..
T Consensus 171 ~e~~~~~~~~~-~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 171 KERERLKKRIL-DEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHH-HHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 33221111111 001112357899999999 999999999887753
No 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.77 E-value=2.1e-18 Score=130.84 Aligned_cols=124 Identities=17% Similarity=0.139 Sum_probs=84.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCccceeEEEEeec------------------------------C-
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS---EDMIPTVGFNMRKVTKG------------------------------N- 63 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~---~~~~~t~~~~~~~~~~~------------------------------~- 63 (184)
...+|+|+|.+|+|||||+|++++..+. ....++........... .
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4589999999999999999999988763 22222221111000000 0
Q ss_pred ----------EEEEEEEcCCccc-----------hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCC
Q 030000 64 ----------VTIKLWDLGGQRR-----------FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI 122 (184)
Q Consensus 64 ----------~~~~~~d~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (184)
..+.+|||||... +......++..+|++++|+|+++.........++..+ . ..+.
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l-~---~~~~ 219 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL-R---GHED 219 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT-T---TCGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH-H---hcCC
Confidence 3589999999765 4566677788999999999998765555555554443 2 2468
Q ss_pred cEEEEEeCCCcccccCHHHHHHH
Q 030000 123 PLLVLGNKIDKSEALSKQALVDQ 145 (184)
Q Consensus 123 ~iivv~nK~D~~~~~~~~~~~~~ 145 (184)
|+++|+||+|+.......+....
T Consensus 220 pvilVlNK~Dl~~~~el~~~~~~ 242 (550)
T 2qpt_A 220 KIRVVLNKADMVETQQLMRVYGA 242 (550)
T ss_dssp GEEEEEECGGGSCHHHHHHHHHH
T ss_pred CEEEEEECCCccCHHHHHHHHHH
Confidence 99999999999865544444443
No 195
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.76 E-value=8.3e-18 Score=121.28 Aligned_cols=108 Identities=16% Similarity=0.069 Sum_probs=65.8
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH--
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-- 139 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-- 139 (184)
.++.+.++||||.... .......+|++++|+|+..+........ .+ ...|.++++||+|+.+....
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence 5678999999995322 2334678999999999876532221111 11 24578999999999653221
Q ss_pred --HHHHHHhCCCcc--CCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 140 --QALVDQLGLESI--TDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 140 --~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
..+...+..... .....+++.+||++|+|+++++++|.+.+.
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 223332222111 012347899999999999999999988764
No 196
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.76 E-value=7.9e-19 Score=135.43 Aligned_cols=158 Identities=22% Similarity=0.260 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc--CCC------CC------------CCCCccceeEEEEeecCEEEEEEEcCCccchhH
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT--GGY------SE------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRT 79 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~--~~~------~~------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 79 (184)
.+|+|+|+.++|||||..+|+. +.. .. ..+-|+......+.++++.++++|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4799999999999999999972 111 00 011244444455778899999999999999999
Q ss_pred hHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH---HHHHHHhCCCc------
Q 030000 80 MWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK---QALVDQLGLES------ 150 (184)
Q Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~---~~~~~~~~~~~------ 150 (184)
.....++-+|++|+|+|+...-..+. ...+..... .++|.++++||+|....+.. +++.+.++...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence 99999999999999999987644443 333343433 37899999999997654322 22222222100
Q ss_pred --------------------------------------------------cCCCceeEEEeeeccCCCHHHHHHHHHHHh
Q 030000 151 --------------------------------------------------ITDREVCCYMISCKDSINIDAVIDWLIKHS 180 (184)
Q Consensus 151 --------------------------------------------------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~ 180 (184)
....-.|++..||+++.|++.+++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 001235788899999999999999999876
Q ss_pred hh
Q 030000 181 KT 182 (184)
Q Consensus 181 ~~ 182 (184)
+.
T Consensus 238 p~ 239 (638)
T 3j25_A 238 YS 239 (638)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 197
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.75 E-value=5.8e-19 Score=125.00 Aligned_cols=133 Identities=14% Similarity=0.080 Sum_probs=102.3
Q ss_pred HHHHHHhcCCCC-CCCCCccceeEEEEeecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCC-CHHHHHHHHH
Q 030000 34 SLVNTIATGGYS-EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRD-SVPIARSELH 111 (184)
Q Consensus 34 tli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~ 111 (184)
+|+.++..+.|. ..+.+|+|..+...-..+..+.+||+ ++++...+..+++++|++++|+|++++. ++..+..|+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~ 109 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLV 109 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHH
Confidence 678888888887 78889999554421112237899999 9999999999999999999999999987 7888888877
Q ss_pred HHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 112 ELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 112 ~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
.+.. .++|+++|+||+|+.+... .+++.+.+.. . ++++++||++|.|++++|+.+..
T Consensus 110 ~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~-----~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 110 LAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSG-----L-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT-----T-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh-----h-CcEEEEECCCCcCHHHHHHHhcC
Confidence 6543 4799999999999965432 2233333321 1 57999999999999999988754
No 198
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.75 E-value=3.7e-19 Score=130.04 Aligned_cols=81 Identities=23% Similarity=0.277 Sum_probs=46.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEe------------------------ecCEEEEEEEcCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMI--PTVGFNMRKVT------------------------KGNVTIKLWDLGG 73 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~--~t~~~~~~~~~------------------------~~~~~~~~~d~~g 73 (184)
++|+++|.+|+|||||+|++++........ .|......... .....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999876322221 23332222110 1136799999999
Q ss_pred ccch----hHhHH---hhccCCCEEEEEEeCCCC
Q 030000 74 QRRF----RTMWE---RYCRGVSAILYVVDAADR 100 (184)
Q Consensus 74 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~ 100 (184)
.... ..... .+++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22222 346889999999999875
No 199
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=2.1e-18 Score=126.45 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=73.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC-------CCccceeEEEE--e--ecCEEEEEEEcCCccchh-------
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATGGYS-EDM-------IPTVGFNMRKV--T--KGNVTIKLWDLGGQRRFR------- 78 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~-------~~t~~~~~~~~--~--~~~~~~~~~d~~g~~~~~------- 78 (184)
-.++|+++|++|+|||||++.+++..+. ... .+|.+.....+ . .....+++||++|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 3588999999999999999999977652 211 12222221111 1 122478999999976531
Q ss_pred HhH------------------HhhccCCCEEEEEEeCCCC-CCHHHHHH-HHHHHhcCCCCCCCcEEEEEeCCCcccccC
Q 030000 79 TMW------------------ERYCRGVSAILYVVDAADR-DSVPIARS-ELHELLMKPSLSGIPLLVLGNKIDKSEALS 138 (184)
Q Consensus 79 ~~~------------------~~~~~~~~~~i~v~d~~~~-~~~~~~~~-~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 138 (184)
... ..++.++++.+++|+.... .++..... ++..+ . .++|+++|+||+|+.....
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccHHH
Confidence 110 1123444543444443322 34555543 33333 2 3799999999999976443
Q ss_pred HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 139 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
...+.+.... .....+++++++|++++.++++++..+.+.++
T Consensus 185 v~~~k~~i~~-~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 185 CQQFKKQIMK-EIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHH-HHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHH-HHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 3322221110 11122456899999999999999888877654
No 200
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.74 E-value=1.4e-16 Score=124.44 Aligned_cols=116 Identities=17% Similarity=0.164 Sum_probs=82.3
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhc--------CCC------------CCCCCCccceeEEEEee-------cCEEEE
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIAT--------GGY------------SEDMIPTVGFNMRKVTK-------GNVTIK 67 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~--------~~~------------~~~~~~t~~~~~~~~~~-------~~~~~~ 67 (184)
+.++.-+|+|+|+.++|||||..+|+. ++. ....+-|+......+.+ .++.++
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 346677899999999999999999981 111 11122233333333433 368999
Q ss_pred EEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 68 LWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 68 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
++|||||.+|.......++-+|++|+|+|+...-..+. ...+..... .++|.++++||+|...
T Consensus 89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----HTCCEEEEEECSSSTT
T ss_pred EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHH----cCCCeEEEEccccccC
Confidence 99999999999999999999999999999987654443 333344433 4899999999999754
No 201
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.73 E-value=1.4e-16 Score=123.77 Aligned_cols=170 Identities=16% Similarity=0.108 Sum_probs=104.7
Q ss_pred HHHHHHHHhhhhc---cceeEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCC-ccce------------------------
Q 030000 4 LDSILNWLRSLFF---KQEMELSLIGLQNAGKTSLVNTIATGGY-SEDMIP-TVGF------------------------ 54 (184)
Q Consensus 4 ~~~~~~~~~~~~~---~~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~~-t~~~------------------------ 54 (184)
++.+.+.++.... -...+|+|+|..++|||||+|++++..+ +..... |...
T Consensus 33 inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~ 112 (772)
T 3zvr_A 33 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFT 112 (772)
T ss_dssp HHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBC
T ss_pred HHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccC
Confidence 3444455554422 2468999999999999999999998776 322221 1100
Q ss_pred ---------------------------eEEEEe-ecCEEEEEEEcCCccc-------------hhHhHHhhc-cCCCEEE
Q 030000 55 ---------------------------NMRKVT-KGNVTIKLWDLGGQRR-------------FRTMWERYC-RGVSAIL 92 (184)
Q Consensus 55 ---------------------------~~~~~~-~~~~~~~~~d~~g~~~-------------~~~~~~~~~-~~~~~~i 92 (184)
....+. ....++.++||||... .......++ ..+|+++
T Consensus 113 ~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL 192 (772)
T 3zvr_A 113 DFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLIL 192 (772)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEE
T ss_pred CHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEE
Confidence 000011 1123588999999432 233444444 5789999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH-HHHHHHhCCCccCCCceeEEEeeeccCCCHHH
Q 030000 93 YVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK-QALVDQLGLESITDREVCCYMISCKDSINIDA 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 171 (184)
+|+|++...........+. .+.. .+.|+++|+||+|+.+.... ..+.. -..........+++.+||++|.|+++
T Consensus 193 ~VVDAs~~~~~~d~l~ll~-~L~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~Gvde 267 (772)
T 3zvr_A 193 AVSPANSDLANSDALKIAK-EVDP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKD 267 (772)
T ss_dssp EEEETTSCSSSCHHHHHHH-HHCT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEE
T ss_pred EEEcCCCCcchhHHHHHHH-HHHh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchh
Confidence 9999986543333222222 2222 47899999999999865432 22221 11111122455788999999999999
Q ss_pred HHHHHHH
Q 030000 172 VIDWLIK 178 (184)
Q Consensus 172 l~~~i~~ 178 (184)
+++.+.+
T Consensus 268 L~eaI~~ 274 (772)
T 3zvr_A 268 ITAALAA 274 (772)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999886
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.71 E-value=1.5e-17 Score=115.77 Aligned_cols=118 Identities=14% Similarity=-0.030 Sum_probs=72.2
Q ss_pred EEEEEEEcCCccchhHhH------HhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 64 VTIKLWDLGGQRRFRTMW------ERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
+.+.+|||||+.+..... ...+.+ +++++++|+.......................+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 579999999987654321 124566 8999999986554444333221111110111368999999999986543
Q ss_pred CHHHHHHHhCC-------------------------CccCCCceeEEEeeeccCCCHHHHHHHHHHHhhh
Q 030000 138 SKQALVDQLGL-------------------------ESITDREVCCYMISCKDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 138 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~ 182 (184)
..++..+.+.. ........+++++||++|+|+++++++|.+.++.
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 22222211100 0000122368999999999999999999988764
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.71 E-value=5.5e-18 Score=121.99 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=67.7
Q ss_pred ecCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH
Q 030000 61 KGNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140 (184)
Q Consensus 61 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~ 140 (184)
..++++.+|||||....... ....+|++++|+|+........... ...+.|.++|+||+|+.......
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---------~~~~~p~ivv~NK~Dl~~~~~~~ 213 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---------GLMEVADLIVINKDDGDNHTNVA 213 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---------HHHHHCSEEEECCCCTTCHHHHH
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---------hhhcccCEEEEECCCCCChHHHH
Confidence 34678999999997654332 4578999999999865432211100 00146889999999986543222
Q ss_pred ----HHHHHhCCCcc--CCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 141 ----ALVDQLGLESI--TDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 141 ----~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
++.+.+..... .....+++++||++|.|+++++++|.+.+.
T Consensus 214 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 214 IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22222111110 111346899999999999999999988764
No 204
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.70 E-value=3.3e-17 Score=112.84 Aligned_cols=112 Identities=17% Similarity=0.250 Sum_probs=90.1
Q ss_pred cCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHH---HHhcCCC-CCCCcEEEEEeC-CCcccccCHHHHHHH
Q 030000 71 LGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELH---ELLMKPS-LSGIPLLVLGNK-IDKSEALSKQALVDQ 145 (184)
Q Consensus 71 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~~iivv~nK-~D~~~~~~~~~~~~~ 145 (184)
.+||..++..|..|++++|++|||+|++|.+.++ ....+. .++.... ..++|++|++|| .|+.......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4678999999999999999999999999998876 444333 3333211 357999999996 689888889999999
Q ss_pred hCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhhcC
Q 030000 146 LGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 184 (184)
Q Consensus 146 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 184 (184)
+++... .+.+.+..|||++|+|+.+.++|+.+.+.+++
T Consensus 273 L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 273 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 998876 47899999999999999999999999987653
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.70 E-value=1.8e-16 Score=107.88 Aligned_cols=153 Identities=15% Similarity=0.201 Sum_probs=87.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEE----------------EEee-------------------
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMR----------------KVTK------------------- 61 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~----------------~~~~------------------- 61 (184)
.+.++|+++|.+|||||||+++++...+.....++++..+. .+..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 45789999999999999999999976544333333332111 1110
Q ss_pred -cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccc--cC
Q 030000 62 -GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEA--LS 138 (184)
Q Consensus 62 -~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~ 138 (184)
....+.++|++|.-.... .+-...+..+.++|.......... . ... .+.|.++|+||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~--~-~~~------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEK--H-PGI------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTT--C-HHH------HTTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhh--h-hhH------hhcCCEEEEeccccCchhHHH
Confidence 011455555555211100 011123445566664322111100 0 011 14678999999998654 23
Q ss_pred HHHHHHHhCCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhhhcC
Q 030000 139 KQALVDQLGLESITDREVCCYMISCKDSINIDAVIDWLIKHSKTAK 184 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~ 184 (184)
.++..+.+... ....+++++||++|.|++++++++.+.+...|
T Consensus 184 ~~~~~~~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 226 (226)
T 2hf9_A 184 IKKMENDAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKEVK 226 (226)
T ss_dssp HHHHHHHHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHhhC
Confidence 44433333210 22357999999999999999999999887654
No 206
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=1.4e-15 Score=109.32 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=57.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEeecC-----------------EEEEEEEcCCccchhH-
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTKGN-----------------VTIKLWDLGGQRRFRT- 79 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~~~- 79 (184)
++|+++|.+|+|||||+|++.+..+.... .+|.+.....+...+ ..+.+||+||+.++.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987643222 235554444444332 5799999999876532
Q ss_pred ------hHHhhccCCCEEEEEEeCCC
Q 030000 80 ------MWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 80 ------~~~~~~~~~~~~i~v~d~~~ 99 (184)
....+++++|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 23345789999999999986
No 207
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2e-15 Score=109.09 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=76.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEeecCEEEEEEEcCCccch-------hHhHHhhccCCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQRRF-------RTMWERYCRGVS 89 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~-------~~~~~~~~~~~~ 89 (184)
..+|+++|.|++|||||+|++.+.+.... +..|.......+...+.+++++|+||.... ....-..++.+|
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 35899999999999999999998665333 345777888889999999999999995322 122334577899
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCcEEEEEeCCCc
Q 030000 90 AILYVVDAADRDSVPIARSELHELLM-KPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 90 ~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~iivv~nK~D~ 133 (184)
++++|+|+.++ .........++.. .....+.|.++++||.|.
T Consensus 152 ~il~vvD~~~p--~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 152 LLFIILDVNKP--LHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEEETTSH--HHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred ccccccccCcc--HHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 99999999864 2222211111111 111234566667777774
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.60 E-value=7.5e-15 Score=105.37 Aligned_cols=108 Identities=12% Similarity=0.073 Sum_probs=65.3
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS--- 138 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~--- 138 (184)
.++++.++||||...-.. .....+|.+++++|+...+....+... ....+.++++||+|+.....
T Consensus 146 ~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---------i~~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---------IFELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp TTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---------HHHHCSEEEEECCSTTCCHHHHH
T ss_pred CCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---------HhccccEEEEEchhccCchhHHH
Confidence 568899999999654322 234689999999998643221111000 01245677889999753221
Q ss_pred --HHHHHHHhCCCccC--CCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 139 --KQALVDQLGLESIT--DREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 139 --~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.+++...+...... ....+++.+||++|.|++++++.|.+...
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 23333333221110 01246888999999999999999988764
No 209
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.58 E-value=2.7e-14 Score=103.21 Aligned_cols=80 Identities=21% Similarity=0.288 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEee---------------------cCEEEEEEEcCCccc
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSED--MIPTVGFNMRKVTK---------------------GNVTIKLWDLGGQRR 76 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~--~~~t~~~~~~~~~~---------------------~~~~~~~~d~~g~~~ 76 (184)
++|+++|.+|+|||||++++.+...... +..|...+...... ....+.+||+||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999987542211 11233333332221 245799999999765
Q ss_pred hh-------HhHHhhccCCCEEEEEEeCCC
Q 030000 77 FR-------TMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 77 ~~-------~~~~~~~~~~~~~i~v~d~~~ 99 (184)
.. .....+++.+|++++|+|+.+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 234456889999999999975
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.42 E-value=3.7e-13 Score=97.75 Aligned_cols=86 Identities=17% Similarity=0.279 Sum_probs=52.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEeec-----------------CEEEEEEEcCCccch
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDM--IPTVGFNMRKVTKG-----------------NVTIKLWDLGGQRRF 77 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~--~~t~~~~~~~~~~~-----------------~~~~~~~d~~g~~~~ 77 (184)
...++|+++|.+|+|||||+|++.+....... ..|.......+... ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45689999999999999999999987653322 23444444444332 235999999998765
Q ss_pred hH-------hHHhhccCCCEEEEEEeCCCCCC
Q 030000 78 RT-------MWERYCRGVSAILYVVDAADRDS 102 (184)
Q Consensus 78 ~~-------~~~~~~~~~~~~i~v~d~~~~~~ 102 (184)
.+ .+..+++++|++++|+|+.+..+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 44 45667899999999999986544
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.35 E-value=1.4e-12 Score=92.26 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=72.6
Q ss_pred ccchhHhHHhhccCCCEEEEEEeCCCCC-CHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCC
Q 030000 74 QRRFRTMWERYCRGVSAILYVVDAADRD-SVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLE 149 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~ 149 (184)
++++......++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... .++..+...
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~-- 139 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYR-- 139 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHH--
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHH--
Confidence 6677777777899999999999999886 88888888875543 4799999999999975431 222222221
Q ss_pred ccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 150 SITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
...++++++||++|.|++++++.+..
T Consensus 140 ---~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 140 ---DAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp ---HTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred ---HCCCeEEEEECCCCCCHHHHHhhccC
Confidence 11347999999999999999987654
No 212
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.26 E-value=1.1e-11 Score=92.91 Aligned_cols=154 Identities=17% Similarity=0.156 Sum_probs=87.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh------cCCCC---C-CCCCc-----------cceeEEE-----------------E
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA------TGGYS---E-DMIPT-----------VGFNMRK-----------------V 59 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~------~~~~~---~-~~~~t-----------~~~~~~~-----------------~ 59 (184)
+...|+++|.+||||||+++.+. +.+.. . .+.+. .+..... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998 22210 0 00000 0111111 1
Q ss_pred eecCEEEEEEEcCCccchh----HhHHhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcE-EEEEeCCC
Q 030000 60 TKGNVTIKLWDLGGQRRFR----TMWERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPL-LVLGNKID 132 (184)
Q Consensus 60 ~~~~~~~~~~d~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-ivv~nK~D 132 (184)
...++.+.++||||..... ...... ...+|.+++|+|+......... ...+ .. .+|+ .+|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~-~~----~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAF-KD----KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHH-HH----HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHH-Hh----hcCceEEEEeCCc
Confidence 1256889999999965321 111111 2278999999999775432222 2222 11 2564 88899999
Q ss_pred cccccCH-HHHHHHhCCCc--------cC--CCceeEEEeeeccCCC-HHHHHHHHHHH
Q 030000 133 KSEALSK-QALVDQLGLES--------IT--DREVCCYMISCKDSIN-IDAVIDWLIKH 179 (184)
Q Consensus 133 ~~~~~~~-~~~~~~~~~~~--------~~--~~~~~~~~~Sa~~~~~-i~~l~~~i~~~ 179 (184)
....... ......++..- .. ....+.+.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 8754332 22333332210 00 0122345689999999 99999998765
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=7.5e-11 Score=86.48 Aligned_cols=138 Identities=12% Similarity=0.183 Sum_probs=70.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----C--ccceeEEEEeecC--EEEEEEEcCCccch-------------
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDMI----P--TVGFNMRKVTKGN--VTIKLWDLGGQRRF------------- 77 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~~----~--t~~~~~~~~~~~~--~~~~~~d~~g~~~~------------- 77 (184)
.++++|+|++|+|||||++.+++..+..... + +............ ..++++|++|....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 3569999999999999999998764321111 1 1111111112222 36889999874321
Q ss_pred -hHhHHhhc-------------cCC--CE-EEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHH
Q 030000 78 -RTMWERYC-------------RGV--SA-ILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQ 140 (184)
Q Consensus 78 -~~~~~~~~-------------~~~--~~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~ 140 (184)
...+..++ .++ |+ ++++.|+..+ +......+...+. .++|+++|.||+|.....+..
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~~E~~ 195 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDLVTMKKLD----SKVNIIPIIAKADAISKSELT 195 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHHHHHHHHh----hCCCEEEEEcchhccchHHHH
Confidence 11111111 122 33 4455565433 2233333333332 578999999999998766555
Q ss_pred HHHHHhCCCccCCCceeEEEeee
Q 030000 141 ALVDQLGLESITDREVCCYMISC 163 (184)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
.+.+.+.. .....+++++++|.
T Consensus 196 ~l~~~I~~-~L~~~gi~I~~is~ 217 (427)
T 2qag_B 196 KFKIKITS-ELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHH-HHBTTBCCCCCCC-
T ss_pred HHHHHHHH-HHHHcCCcEEecCC
Confidence 54444432 12234455666664
No 214
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.19 E-value=6.5e-10 Score=81.51 Aligned_cols=159 Identities=16% Similarity=0.225 Sum_probs=87.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcc-cee----EEEEeecC-EEEEEEEcCCccch----hHhHHh-hc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTV-GFN----MRKVTKGN-VTIKLWDLGGQRRF----RTMWER-YC 85 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~-~~~----~~~~~~~~-~~~~~~d~~g~~~~----~~~~~~-~~ 85 (184)
.....++++|++|||||||+|.+.+-..+....-+. +.. ...+.... ..+.+||++|.... ...... .+
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 345689999999999999999998733221111111 100 11122222 25789999984321 111111 23
Q ss_pred cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc---------ccCHHHHHHHhCCC------c
Q 030000 86 RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE---------ALSKQALVDQLGLE------S 150 (184)
Q Consensus 86 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~---------~~~~~~~~~~~~~~------~ 150 (184)
...+..+. ++... +...+..+...+.. .+.|+++|.||.|+.- ....+++.+.+... .
T Consensus 147 ~~~~~~~~-lS~G~---~~kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 147 YEYDFFII-ISATR---FKKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGCSEEEE-EESSC---CCHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCC---ccHHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 34455554 77642 12222233333332 3689999999999751 12233333222211 0
Q ss_pred cCCCceeEEEeee--ccCCCHHHHHHHHHHHhhh
Q 030000 151 ITDREVCCYMISC--KDSINIDAVIDWLIKHSKT 182 (184)
Q Consensus 151 ~~~~~~~~~~~Sa--~~~~~i~~l~~~i~~~~~~ 182 (184)
.......++.+|+ .++.|++++.+.+.+.++.
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 0011235788999 6777899999999988765
No 215
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.19 E-value=1.4e-10 Score=84.46 Aligned_cols=83 Identities=22% Similarity=0.363 Sum_probs=60.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCC-CCCCC--CccceeEEEEeecC-----------------EEEEEEEcCCccc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGY-SEDMI--PTVGFNMRKVTKGN-----------------VTIKLWDLGGQRR 76 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~-~~~~~--~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~ 76 (184)
.+..+|+++|++|+|||||+|.+.+... ..... .|.......+...+ ..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4568999999999999999999998654 33322 24455555544433 4689999999432
Q ss_pred -------hhHhHHhhccCCCEEEEEEeCCC
Q 030000 77 -------FRTMWERYCRGVSAILYVVDAAD 99 (184)
Q Consensus 77 -------~~~~~~~~~~~~~~~i~v~d~~~ 99 (184)
....+...++.+|+++.|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33355566789999999999864
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.18 E-value=6.7e-12 Score=91.18 Aligned_cols=113 Identities=12% Similarity=0.051 Sum_probs=66.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC------CCCCCC--CCccceeEEEEeecCEEEEEEEcCCccchh--------HhHH
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG------GYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQRRFR--------TMWE 82 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~------~~~~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~--------~~~~ 82 (184)
..+|+++|.+|+|||||+|++++. ...... ..|.......+.. .+.++||||..... ....
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 468999999999999999999965 222121 2233322222221 27899999943221 1122
Q ss_pred hhc--cCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCH
Q 030000 83 RYC--RGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSK 139 (184)
Q Consensus 83 ~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~ 139 (184)
..+ +..+.+++++++...-.+..+.. +......+.|+++++||.|.......
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~ 292 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKL 292 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEG
T ss_pred HHhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccH
Confidence 222 56889999999842100000000 12222357899999999998764433
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.15 E-value=3.3e-10 Score=78.84 Aligned_cols=119 Identities=19% Similarity=0.266 Sum_probs=65.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCCCCC---------CCccceeEEEE--ee--cCEEEEEEEcCCccc---------
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYSEDM---------IPTVGFNMRKV--TK--GNVTIKLWDLGGQRR--------- 76 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~~~~---------~~t~~~~~~~~--~~--~~~~~~~~d~~g~~~--------- 76 (184)
.++++++|++|+|||||++.+++...+... ..+.......+ .. -...++++|++|-..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 589999999999999999999853322110 01111011111 11 123678999987221
Q ss_pred -hhHh----HHhh--------------ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccccc
Q 030000 77 -FRTM----WERY--------------CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEAL 137 (184)
Q Consensus 77 -~~~~----~~~~--------------~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 137 (184)
.... .... +..+++.++++|.... .+......+...+.. .+++++++||+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~~----~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLSK----VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHHT----TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHHh----cCcEEEEEeccccCCHH
Confidence 0000 0000 1235888999996422 233333333333333 28999999999998765
Q ss_pred CHHHH
Q 030000 138 SKQAL 142 (184)
Q Consensus 138 ~~~~~ 142 (184)
+....
T Consensus 157 e~~~~ 161 (270)
T 3sop_A 157 EKSEF 161 (270)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.12 E-value=2.7e-11 Score=87.91 Aligned_cols=117 Identities=9% Similarity=0.006 Sum_probs=66.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCCCC---------CCCCCccceeEEEEeecCEEEEEEEcCCccchh--------HhH
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGGYS---------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFR--------TMW 81 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~~~---------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~--------~~~ 81 (184)
..+|+++|.+|+|||||+|++++.... .....|.......+.. .+.++||||..... ...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 468999999999999999999875211 1111222222222211 27899999953321 111
Q ss_pred Hhh--ccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHH
Q 030000 82 ERY--CRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALV 143 (184)
Q Consensus 82 ~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~ 143 (184)
... ....+.++++++....-....+. .+......+.|+++++||.|.......+...
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~-----~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~ 295 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLA-----RFDYVSGGRRAFTCHFSNRLTIHRTKLEKAD 295 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTE-----EEEEEESSSEEEEEEECTTSCEEEEEHHHHH
T ss_pred HHhccccccCceEEEEcCCCEEEEcceE-----EEEEecCCCceEEEEecCccccccccHHHHH
Confidence 121 35678889999873210000000 0112223578999999999987755444333
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.06 E-value=3.8e-10 Score=79.04 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=69.9
Q ss_pred EEEcCCcc-chhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHh
Q 030000 68 LWDLGGQR-RFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQL 146 (184)
Q Consensus 68 ~~d~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~ 146 (184)
+-..||+. .........+.++|+++.|+|+.++.+... ..+..++ .++|.++|+||+|+.+....+...+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 34568876 556677778999999999999998876642 1222232 478999999999997643333444433
Q ss_pred CCCccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 147 GLESITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 147 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.. .+.+++.+||++|.|++++++.+.+.+.
T Consensus 76 ~~-----~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 EN-----QGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HT-----TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred Hh-----cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 21 2236899999999999999998887764
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.05 E-value=7.4e-11 Score=85.64 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=67.1
Q ss_pred CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhC--CC
Q 030000 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLG--LE 149 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~--~~ 149 (184)
.+++|.+....+.+.++++++|+|+.++. ..|...+.+.. .++|+++|+||+|+.+... .++..+.+. ..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 47789999999999999999999998631 22222221111 3789999999999976432 222222111 00
Q ss_pred ccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 150 SITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
.......+++.+||++|.|++++++.+.+...
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 01111236899999999999999999977543
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.00 E-value=2.5e-10 Score=82.91 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=67.5
Q ss_pred CccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC-HHHHHHHhC--CC
Q 030000 73 GQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS-KQALVDQLG--LE 149 (184)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~-~~~~~~~~~--~~ 149 (184)
.+++|.+....+++.++++++|+|+.++.+ .....+...+ .+.|+++|+||+|+.+... .+...+.+. ..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 488899999998899999999999988652 1111112221 3789999999999976532 222222111 01
Q ss_pred ccCCCceeEEEeeeccCCCHHHHHHHHHHHhh
Q 030000 150 SITDREVCCYMISCKDSINIDAVIDWLIKHSK 181 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~ 181 (184)
........++.+||++|.|++++++.+.+...
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 11112236899999999999999999987654
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.85 E-value=5.6e-09 Score=73.13 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=35.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--CCccceeEEEEeecCEEEEEEEcCCcc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGGYS-EDM--IPTVGFNMRKVTKGNVTIKLWDLGGQR 75 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~~~-~~~--~~t~~~~~~~~~~~~~~~~~~d~~g~~ 75 (184)
...++|+++|.+|+|||||+|++.+.... ... ..|..... +.. +..+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe-CCCEEEEECcCcC
Confidence 45689999999999999999999976532 111 12322221 111 2358899999954
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.82 E-value=5.9e-10 Score=82.37 Aligned_cols=110 Identities=11% Similarity=0.066 Sum_probs=58.4
Q ss_pred cCEEEEEEEcCCccchhH----hHHh--hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCC-c-EEEEEeCCCc
Q 030000 62 GNVTIKLWDLGGQRRFRT----MWER--YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGI-P-LLVLGNKIDK 133 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~----~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-iivv~nK~D~ 133 (184)
.++.+.++||||...... .... ....+|.+++|+|+.... . .......+ + ... | ..+|+||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~-~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q-AGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G-HHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H-HHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 567899999999654321 1111 123689999999986543 2 22222222 2 134 5 7889999998
Q ss_pred ccccC-HHHHHHHhCCCcc----------CCCceeEEEeeeccCCC-HHHHHHHHHHH
Q 030000 134 SEALS-KQALVDQLGLESI----------TDREVCCYMISCKDSIN-IDAVIDWLIKH 179 (184)
Q Consensus 134 ~~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~-i~~l~~~i~~~ 179 (184)
..... ........+.... .....+...+|+..|.| +..+++.+.+.
T Consensus 251 ~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~ 308 (432)
T 2v3c_C 251 SAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDM 308 (432)
T ss_dssp CSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSC
T ss_pred ccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 54322 1223333322100 00122334567777777 66666555433
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.82 E-value=5.6e-09 Score=77.04 Aligned_cols=111 Identities=17% Similarity=0.177 Sum_probs=61.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc-----C-CCC----CCCCC-----------ccceeEEE-----------------Ee
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT-----G-GYS----EDMIP-----------TVGFNMRK-----------------VT 60 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~-----~-~~~----~~~~~-----------t~~~~~~~-----------------~~ 60 (184)
+..|+++|++|+||||++..+.. + +.. ..+.+ ..+..... ..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 56789999999999999988862 1 100 00000 01111111 11
Q ss_pred ecCEEEEEEEcCCccchhH----hHH--hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 61 KGNVTIKLWDLGGQRRFRT----MWE--RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 61 ~~~~~~~~~d~~g~~~~~~----~~~--~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
..++.+.++||||...... ... .....+|.+++|+|+......... ...+... -.+..+|+||.|..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~----~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA----TPIGSIIVTKLDGS 252 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS----CTTEEEEEECCSSC
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh----CCCeEEEEECCCCc
Confidence 2348899999999432211 111 123357899999999764332222 2222222 23456889999985
Q ss_pred cc
Q 030000 135 EA 136 (184)
Q Consensus 135 ~~ 136 (184)
..
T Consensus 253 ~~ 254 (443)
T 3dm5_A 253 AK 254 (443)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.76 E-value=5.7e-09 Score=72.32 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEeecCEEEEEEEcCCccc
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQRR 76 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~~ 76 (184)
++++++|.+|+|||||+|++.+..... ..++.+.+. ..+. .+..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~-~~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFS-LENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEE-CTTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEE-eCCCEEEEECCCccc
Confidence 699999999999999999999765422 122222111 1111 123688999999654
No 226
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.72 E-value=9.2e-08 Score=73.84 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~ 43 (184)
.|+|+|+.|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999998754
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.70 E-value=4.8e-08 Score=74.69 Aligned_cols=69 Identities=25% Similarity=0.290 Sum_probs=46.1
Q ss_pred HHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----CCccceeEEEE---eecCEEEEEEEcCCcc
Q 030000 6 SILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATGGYSEDM-----IPTVGFNMRKV---TKGNVTIKLWDLGGQR 75 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~-----~~t~~~~~~~~---~~~~~~~~~~d~~g~~ 75 (184)
.+.+.+... ..+..+|+|+|.+|+|||||+|++++....... ..|.+...+.. ...+..+.++||||..
T Consensus 26 eal~~L~~i-~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 26 EALKILSAI-TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp HHHHHHHTC-CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred HHHHHHHhc-cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 344555543 456788999999999999999999976632111 23444433322 2346789999999954
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.49 E-value=3.7e-08 Score=68.22 Aligned_cols=93 Identities=13% Similarity=0.049 Sum_probs=61.3
Q ss_pred cCCccc-hhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccCHHHHHHHhCCC
Q 030000 71 LGGQRR-FRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLE 149 (184)
Q Consensus 71 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~ 149 (184)
.|||.. ........+.++|+++.|+|+.++.+..... +. . . ++|.++|+||+|+.+....+...+.+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~------l~-l-l-~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG------VD-F-S-RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT------SC-C-T-TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH------HH-h-c-CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 477663 4456777789999999999998876554211 11 1 1 7899999999999775433343443321
Q ss_pred ccCCCceeEEEeeeccCCCHHHHHHHHHH
Q 030000 150 SITDREVCCYMISCKDSINIDAVIDWLIK 178 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~ 178 (184)
.+.++ .+||++|.|++++++.+.+
T Consensus 74 ----~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 ----QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ----TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ----cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 12356 8999999999999887654
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.43 E-value=2.1e-07 Score=68.71 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=39.9
Q ss_pred cCEEEEEEEcCCccc------hhHhHHh--hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCc
Q 030000 62 GNVTIKLWDLGGQRR------FRTMWER--YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~------~~~~~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 133 (184)
.++.+.++||||... ....... .....+.+++|+|+............+... -.+..+++||.|.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMDG 250 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGGG
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecccc
Confidence 367899999999533 1111111 122468999999997653333333333222 1346788999997
Q ss_pred cc
Q 030000 134 SE 135 (184)
Q Consensus 134 ~~ 135 (184)
..
T Consensus 251 ~a 252 (433)
T 3kl4_A 251 TA 252 (433)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.28 E-value=4.1e-07 Score=64.12 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=40.6
Q ss_pred cCEEEEEEEcCCccc--hhH-hHH-----hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCC
Q 030000 62 GNVTIKLWDLGGQRR--FRT-MWE-----RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKID 132 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D 132 (184)
.++.+.++||||... ... ... .....+|.+++|+|+... .........+.. ..| ..+++||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 567899999999766 322 111 124468999999998643 222222222221 355 678899999
Q ss_pred ccc
Q 030000 133 KSE 135 (184)
Q Consensus 133 ~~~ 135 (184)
...
T Consensus 251 ~~~ 253 (297)
T 1j8m_F 251 GTA 253 (297)
T ss_dssp GCT
T ss_pred CCc
Confidence 753
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.27 E-value=3.4e-07 Score=64.70 Aligned_cols=85 Identities=18% Similarity=0.118 Sum_probs=56.7
Q ss_pred HhhccCCCEEEEEEeCCCCCC-HHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC----HHHHHHHhCCCccCCCce
Q 030000 82 ERYCRGVSAILYVVDAADRDS-VPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS----KQALVDQLGLESITDREV 156 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~ 156 (184)
...+.++|.+++|+|+.++.. ...+..++..... .++|.++|+||+|+.+... .+.+.+.+.. ..+
T Consensus 81 R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~-----~g~ 151 (307)
T 1t9h_A 81 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN-----IGY 151 (307)
T ss_dssp TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH-----HTC
T ss_pred HHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCccCchhhhHHHHHHHHHHHHh-----CCC
Confidence 346889999999999986543 3333444333322 4789999999999987533 2334443311 123
Q ss_pred eEEEeeeccCCCHHHHHHH
Q 030000 157 CCYMISCKDSINIDAVIDW 175 (184)
Q Consensus 157 ~~~~~Sa~~~~~i~~l~~~ 175 (184)
+++.+|+++|.|++++++.
T Consensus 152 ~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp CEEECCHHHHTTCTTTGGG
T ss_pred eEEEEecCCCCCHHHHHhh
Confidence 6899999999998877654
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.20 E-value=6e-06 Score=59.53 Aligned_cols=84 Identities=17% Similarity=0.105 Sum_probs=54.1
Q ss_pred hccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcccccC---HHHHHHHhCCCccCCCceeEEE
Q 030000 84 YCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSEALS---KQALVDQLGLESITDREVCCYM 160 (184)
Q Consensus 84 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
...++|.+++|.......+...+..++..... .++|.++|+||+|+.+... .+++...+. ..+++++.
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~-----~~G~~v~~ 197 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR-----NIGYRVLM 197 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHH-----TTTCCEEE
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHH-----hCCCcEEE
Confidence 36789999988665433334444444433222 3688899999999976543 222333322 23346899
Q ss_pred eeeccCCCHHHHHHHH
Q 030000 161 ISCKDSINIDAVIDWL 176 (184)
Q Consensus 161 ~Sa~~~~~i~~l~~~i 176 (184)
+|+++|.|++++...+
T Consensus 198 ~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 198 VSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred EecCCCcCHHHHHHhc
Confidence 9999999999887654
No 233
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.11 E-value=2.3e-06 Score=63.42 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=39.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC------------------CCCCC---CCCccceeEEEE-------eecCEEEEE
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG------------------GYSED---MIPTVGFNMRKV-------TKGNVTIKL 68 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~------------------~~~~~---~~~t~~~~~~~~-------~~~~~~~~~ 68 (184)
.+..-|.|+|++++|||||+|++++. .+... ...|.|+-.+.. +.....+.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 45566789999999999999999852 23221 223555443321 123578999
Q ss_pred EEcCCccc
Q 030000 69 WDLGGQRR 76 (184)
Q Consensus 69 ~d~~g~~~ 76 (184)
+||+|...
T Consensus 145 lDTeG~~~ 152 (447)
T 3q5d_A 145 MDTQGTFD 152 (447)
T ss_dssp EEEECCCS
T ss_pred EcCCcccc
Confidence 99999543
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.10 E-value=1.1e-06 Score=62.80 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.--++++|+.||||||+++.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34568899999999999999987
No 235
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.09 E-value=4.8e-07 Score=67.88 Aligned_cols=94 Identities=15% Similarity=0.172 Sum_probs=54.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE----eecCEEEEEEEcCCcc--chhHhH--------
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQR--RFRTMW-------- 81 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~d~~g~~--~~~~~~-------- 81 (184)
...+..|+++|.+||||||+.+++...-. ....++..+....+ ........+||..|.+ +....+
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999873211 01112222111000 0111334578888873 233333
Q ss_pred HhhccCCCEEEEEEeCCCCCCHHHHHHHHH
Q 030000 82 ERYCRGVSAILYVVDAADRDSVPIARSELH 111 (184)
Q Consensus 82 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 111 (184)
..++....+.++|+|.++. +...-..++.
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~ 143 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFN 143 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHH
Confidence 4456667888999999887 4544444433
No 236
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.02 E-value=4.8e-06 Score=55.62 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 4 LDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
++.+.+.+... .++...|+|+|++|||||||++.+.+
T Consensus 8 ~~~~~~~~~~~-~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPR-QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTT-CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44444444433 34567899999999999999998873
No 237
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.01 E-value=1.9e-06 Score=64.49 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.--++++|+.|||||||++.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHH
Confidence 4568899999999999999987
No 238
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.00 E-value=4.9e-06 Score=58.83 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.-.|+++|+.||||||+++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3468899999999999999997
No 239
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.98 E-value=1.4e-05 Score=59.15 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=39.7
Q ss_pred cCEEEEEEEcCCccchhH-hHH-----hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcc
Q 030000 62 GNVTIKLWDLGGQRRFRT-MWE-----RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKS 134 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~ 134 (184)
.++.+.++||||...... ... .....++.+++|+|+.......... ..+ . ...+ .-+++||.|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~---~~f-~----~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTA---KAF-N----EALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHH---HHH-H----HHSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHH---HHH-h----ccCCCeEEEEecCCCC
Confidence 468899999999654321 111 1244688999999997554332222 222 1 1233 23689999975
Q ss_pred cc
Q 030000 135 EA 136 (184)
Q Consensus 135 ~~ 136 (184)
..
T Consensus 254 ~~ 255 (433)
T 2xxa_A 254 AR 255 (433)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 240
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.91 E-value=1.1e-05 Score=52.43 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=28.3
Q ss_pred HHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 5 DSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.+.++..++...+.-.++++|++|+|||||++.+.+
T Consensus 24 ~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 24 LTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4455556555555566789999999999999999874
No 241
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.91 E-value=6.6e-06 Score=53.61 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+++++|++|||||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 242
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.90 E-value=1.5e-05 Score=52.85 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=29.7
Q ss_pred hHHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 3 FLDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+++.+.+++......+...|+++|++||||||+++.+..
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455566666555445567899999999999999998863
No 243
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.79 E-value=1.4e-05 Score=59.01 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=37.2
Q ss_pred cCEEEEEEEcCCccchhH-hHH-----hhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc-EEEEEeCCCcc
Q 030000 62 GNVTIKLWDLGGQRRFRT-MWE-----RYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIP-LLVLGNKIDKS 134 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~ 134 (184)
..+.+.++||||...... ... ...-.++.+++|+|+.... ........+.. ..+ .-+++||.|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~-----~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDE-----KVGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHH-----HTCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHh-----cCCceEEEEeCcCCc
Confidence 467899999999543221 111 1123588899999986432 22222222211 122 45678999964
Q ss_pred c
Q 030000 135 E 135 (184)
Q Consensus 135 ~ 135 (184)
.
T Consensus 251 ~ 251 (425)
T 2ffh_A 251 A 251 (425)
T ss_dssp S
T ss_pred c
Confidence 3
No 244
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.78 E-value=1.4e-05 Score=52.16 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-++++|++|||||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999753
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.75 E-value=1.9e-05 Score=52.39 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.--++++|++|||||||++.+.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3346889999999999999999753
No 246
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.74 E-value=1.4e-05 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
-.++++|++|||||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4688999999999999999974
No 247
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.73 E-value=0.0002 Score=47.37 Aligned_cols=70 Identities=10% Similarity=0.005 Sum_probs=47.0
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCcEEEEEeCCCccc
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPS-LSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~ 135 (184)
..+.+.++|+|+... ......+..+|.++++...+... .........+..... ..+.++.+|+|++|...
T Consensus 74 ~~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TTSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 358899999998652 33445566699999999986554 555555554433211 34567899999999543
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.73 E-value=1.6e-05 Score=51.35 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=18.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.--++++|++|||||||++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3457899999999999999654
No 249
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.71 E-value=5.2e-05 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=21.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
..+...|+|+|++|||||||++.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999998876
No 250
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.68 E-value=2.6e-05 Score=53.44 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+++|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999997
No 251
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.68 E-value=2.3e-05 Score=51.36 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
++++|++|||||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999984
No 252
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.67 E-value=3e-05 Score=50.81 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.-.|+++|++||||||+++.+.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456899999999999999999754
No 253
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.66 E-value=1.5e-05 Score=54.04 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=18.0
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...+.--++++|++||||||+++.+.
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 333444568999999999999999998
No 254
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.66 E-value=2.4e-05 Score=52.16 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.--++++|++|||||||++.+.+-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345789999999999999999753
No 255
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.64 E-value=2.8e-05 Score=52.38 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.--++|+|++|||||||++.+.+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 346789999999999999999854
No 256
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.62 E-value=2.5e-05 Score=52.55 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.-.++|+|++|||||||++.+.+.
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3445789999999999999999753
No 257
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.61 E-value=3.2e-05 Score=52.66 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
=.++++|+.|||||||++.+.+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999999974
No 258
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.60 E-value=3.7e-05 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.--|+++|++|||||||++.|...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 345789999999999999999843
No 259
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.60 E-value=4.2e-05 Score=50.99 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+...|+++|+.|||||||++.+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 446789999999999999999874
No 260
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.58 E-value=4e-05 Score=51.12 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.--|+++|++||||||+++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 345889999999999999999854
No 261
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.58 E-value=3.9e-05 Score=51.85 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
.++++|+.|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999743
No 262
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.58 E-value=5.3e-05 Score=48.28 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
.+.-.++++|+.|||||||++.+.+.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 444568899999999999999998644
No 263
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.57 E-value=4.4e-05 Score=49.99 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030000 22 LSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~ 42 (184)
|+|+||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999743
No 264
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.57 E-value=4.3e-05 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
..|+++|++||||||+.+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 265
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=5.3e-05 Score=50.11 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=20.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+.-.|+++|++||||||+.+.+.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Confidence 344578999999999999999986
No 266
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.54 E-value=5.4e-05 Score=48.70 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 030000 20 MELSLIGLQNAGKTSLVNTI 39 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~ 39 (184)
.-|++.|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 267
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.54 E-value=4.9e-05 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999843
No 268
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.54 E-value=5.4e-05 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
...|+++|++||||||+++.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999886
No 269
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.53 E-value=5.1e-05 Score=50.88 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
.++++|+.|||||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999743
No 270
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.53 E-value=6.1e-05 Score=51.55 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=21.9
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...+...|+++|+.|||||||++.+.+
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344566799999999999999999875
No 271
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.52 E-value=5e-05 Score=52.91 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999743
No 272
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.52 E-value=6.9e-05 Score=48.85 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+++|.+||||||+.+.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999986
No 273
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.52 E-value=5.9e-05 Score=49.27 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
..+...|+++|.+||||||+.+.|..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999999864
No 274
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.52 E-value=5.6e-05 Score=50.60 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
++|+++|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
No 275
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.52 E-value=5.1e-05 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999743
No 276
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.52 E-value=5.6e-05 Score=50.21 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+..-|+++|++||||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999974
No 277
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.52 E-value=5.4e-05 Score=50.19 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
...|+++|++||||||+++.+.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568999999999999999997543
No 278
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.51 E-value=5.5e-05 Score=49.53 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-++++|++||||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 468999999999999999974
No 279
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.51 E-value=5.9e-05 Score=51.42 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
=.++++|+.|||||||++.+.+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3678999999999999999974
No 280
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.51 E-value=5.5e-05 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 45789999999999999999753
No 281
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.51 E-value=5.4e-05 Score=48.65 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.|+++|++||||||+.+.|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999986
No 282
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.50 E-value=0.00053 Score=48.45 Aligned_cols=82 Identities=10% Similarity=0.097 Sum_probs=49.6
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCcccccCHHH
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDKSEALSKQA 141 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~~~ 141 (184)
.+.+.++|+|+..... .....+..+|.++++.+.+ ..+.......+..+.......+.+++ +|+|+++.. ...++
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~~~~~ 231 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDR 231 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHH
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--HHHHH
Confidence 4789999998754322 1234467799999999864 33445555555544433223456655 889999842 23445
Q ss_pred HHHHhCC
Q 030000 142 LVDQLGL 148 (184)
Q Consensus 142 ~~~~~~~ 148 (184)
+.+.++.
T Consensus 232 ~~~~~g~ 238 (307)
T 3end_A 232 FCKETNF 238 (307)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 5555543
No 283
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.50 E-value=6.6e-05 Score=50.97 Aligned_cols=32 Identities=19% Similarity=0.097 Sum_probs=21.8
Q ss_pred HHHhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 9 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
...|+........|+++|.+||||||+.+.|.
T Consensus 6 ~~~p~~~~~~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 6 AAEPVPESPKGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp --------CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCCCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34455555566889999999999999999986
No 284
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.50 E-value=6.2e-05 Score=50.39 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
++|+++|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
No 285
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.50 E-value=5.6e-05 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999743
No 286
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.49 E-value=7.3e-05 Score=48.40 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3588999999999999999974
No 287
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.49 E-value=6.6e-05 Score=51.48 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999743
No 288
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.49 E-value=6.8e-05 Score=51.30 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.=.++++|+.|||||||++.+.+-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999743
No 289
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.48 E-value=6.4e-05 Score=49.77 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-.|+++|++||||||+++.+.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999863
No 290
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.48 E-value=7.1e-05 Score=50.75 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999743
No 291
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.47 E-value=0.00017 Score=51.16 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=22.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
..+..-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34567789999999999999999874
No 292
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.47 E-value=6.4e-05 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 35789999999999999999743
No 293
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.47 E-value=6.5e-05 Score=51.31 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999743
No 294
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.47 E-value=8.2e-05 Score=48.75 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+++|.+||||||+.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44678999999999999999986
No 295
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.46 E-value=6.7e-05 Score=51.73 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999753
No 296
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.46 E-value=7.6e-05 Score=53.85 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGY 44 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~ 44 (184)
-.++++|++|+|||||+|.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3688999999999999999986543
No 297
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.46 E-value=9.1e-05 Score=50.65 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=22.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.++.+.|+++|++||||||+++.|.
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3467899999999999999999996
No 298
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.46 E-value=0.00012 Score=52.07 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.+-|+++|++|||||||++.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999885
No 299
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.46 E-value=7e-05 Score=51.42 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35789999999999999999743
No 300
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.46 E-value=7.6e-05 Score=49.46 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+|+|+|.+||||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999975
No 301
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.45 E-value=6e-05 Score=50.32 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999854
No 302
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.45 E-value=8.3e-05 Score=49.21 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
....+.|+++|.+||||||+.+.|.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999986
No 303
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.45 E-value=7.2e-05 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999853
No 304
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.45 E-value=8.1e-05 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+++|.+||||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999886
No 305
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.44 E-value=6.4e-05 Score=49.38 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.++++|++|||||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999999875
No 306
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.44 E-value=7.8e-05 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999854
No 307
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.44 E-value=7.6e-05 Score=51.61 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.-.++|+|++|||||||++.+.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 4445689999999999999999874
No 308
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.44 E-value=8.1e-05 Score=51.44 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999753
No 309
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.44 E-value=8.4e-05 Score=52.46 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.4
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
..++.=.++|+|++|||||||++.+.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 334556789999999999999999973
No 310
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.43 E-value=7.6e-05 Score=51.89 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999743
No 311
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.43 E-value=8.8e-05 Score=51.80 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35789999999999999999743
No 312
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.42 E-value=8.4e-05 Score=48.00 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
..|+++|++||||||+++.+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999863
No 313
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.42 E-value=9.6e-05 Score=49.24 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
+.|+++|+|||||+|....+.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999987
No 314
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.41 E-value=0.0001 Score=48.77 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+...|++.|.+||||||+++.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999974
No 315
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.41 E-value=8.5e-05 Score=49.19 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...|+++|.+||||||+++.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999863
No 316
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.41 E-value=8.9e-05 Score=47.97 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-|+++|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999974
No 317
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.41 E-value=8.5e-05 Score=51.13 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999743
No 318
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.41 E-value=8.8e-05 Score=50.65 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
--++++|++|||||||++.+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 457899999999999999887
No 319
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.41 E-value=0.0001 Score=48.88 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.|+++|++||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 320
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.41 E-value=0.00013 Score=52.67 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=21.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
..+.-.|+|+|++|||||||++.+.+
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33444799999999999999999873
No 321
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.40 E-value=8.5e-05 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35789999999999999999743
No 322
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.40 E-value=0.00013 Score=48.27 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=20.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+...|+++|++||||||+++.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345678899999999999999886
No 323
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.40 E-value=0.0001 Score=48.70 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.|++.|.+||||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999863
No 324
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.40 E-value=0.00023 Score=46.19 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
..-.+++.|++|+|||++++.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999998874
No 325
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.40 E-value=0.00012 Score=48.43 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=22.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.+...|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999754
No 326
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.39 E-value=0.00011 Score=47.99 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
..|++.|.+||||||+++.|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999986
No 327
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.38 E-value=0.0001 Score=48.74 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=21.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
..+...|++.|.+||||||+.+.+.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3445678999999999999999886
No 328
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.38 E-value=0.00012 Score=47.90 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.|++.|.+||||||+++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 329
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.38 E-value=0.00011 Score=49.22 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
++|++.|.+||||||+++.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999986
No 330
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.38 E-value=0.00013 Score=48.92 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.+.|+|.|.+||||||+++.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999964
No 331
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.37 E-value=0.00012 Score=47.49 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
..++++|++|||||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4578999999999999999984
No 332
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.37 E-value=0.00018 Score=47.67 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 4 LDSILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
++.+..++...+ +.-.+++.|++|+||||++.++.
T Consensus 45 ~~~l~~~~~~iP--kkn~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 45 LGALKSFLKGTP--KKNCLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp HHHHHHHHHTCT--TCSEEEEESCGGGCHHHHHHHHH
T ss_pred HHHHHHHHhcCC--cccEEEEECCCCCCHHHHHHHHH
Confidence 445555554432 23358999999999999888876
No 333
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.36 E-value=0.00012 Score=50.70 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~ 43 (184)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999997543
No 334
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.35 E-value=0.00012 Score=48.04 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+...|+++|.+||||||+.+.|.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999886
No 335
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.35 E-value=0.00013 Score=46.65 Aligned_cols=22 Identities=27% Similarity=0.532 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
No 336
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.35 E-value=0.00014 Score=51.44 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
-.++++|++|||||||++.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 357899999999999999998544
No 337
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.35 E-value=0.00064 Score=50.45 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=38.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh------------------cCCCCC---CCCCccceeEEE----E---eecCEEEEEE
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA------------------TGGYSE---DMIPTVGFNMRK----V---TKGNVTIKLW 69 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~------------------~~~~~~---~~~~t~~~~~~~----~---~~~~~~~~~~ 69 (184)
+..-|.|+|+.++|||+|+|.++ ...|.. ....|.|+-.+. + +..+..+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 44556799999999999999665 123332 223477755543 1 2345789999
Q ss_pred EcCCcc
Q 030000 70 DLGGQR 75 (184)
Q Consensus 70 d~~g~~ 75 (184)
||.|..
T Consensus 146 DTEG~~ 151 (457)
T 4ido_A 146 DTQGTF 151 (457)
T ss_dssp EECCBT
T ss_pred eccCCC
Confidence 999943
No 338
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.35 E-value=0.00014 Score=48.37 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+...|+++|++||||||+++.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999974
No 339
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.34 E-value=0.00014 Score=47.62 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
...|++.|.+||||||+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999886
No 340
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.34 E-value=0.0001 Score=47.79 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+++|.+||||||+.+.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34568999999999999999986
No 341
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.33 E-value=0.00012 Score=49.36 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.--++++|++|||||||++.+.+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999975
No 342
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.33 E-value=0.00015 Score=48.22 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...|++.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 343
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.33 E-value=0.00014 Score=48.50 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
++...|++.|.+||||||+++.|.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 445789999999999999999986
No 344
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.32 E-value=0.00012 Score=51.71 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
-.++++|++|+|||||+|.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999998
No 345
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.32 E-value=0.00014 Score=48.35 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|++.|.+||||||+++.|.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 45679999999999999999986
No 346
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.32 E-value=0.00014 Score=49.13 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|++.|.+||||||+++.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999999986
No 347
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.31 E-value=0.00015 Score=47.27 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
...|+++|++||||||+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999999986
No 348
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.31 E-value=0.00032 Score=46.31 Aligned_cols=22 Identities=41% Similarity=0.418 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999999874
No 349
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.30 E-value=0.00013 Score=52.65 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-++++|+.|||||||++.+.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4689999999999999999853
No 350
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.30 E-value=0.00014 Score=51.00 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 35789999999999999999743
No 351
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.30 E-value=0.00016 Score=49.67 Aligned_cols=25 Identities=20% Similarity=0.326 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998864
No 352
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.29 E-value=8.4e-05 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.=.++++|+.|||||||++.+.+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 34689999999999999999974
No 353
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.28 E-value=4.1e-05 Score=54.13 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
-.++++|++|+|||||+|.+.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47899999999999999999854
No 354
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.28 E-value=0.00014 Score=47.04 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
+|+++|++||||||+.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 355
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.28 E-value=6.7e-05 Score=48.48 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.++|+|++|||||||++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999997
No 356
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.27 E-value=0.0002 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.+.|+++|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999985
No 357
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.27 E-value=0.00012 Score=53.22 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.-+++|+|++|||||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999999743
No 358
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.27 E-value=0.00016 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-++++|+.|||||||++.+.+-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 35789999999999999999843
No 359
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.26 E-value=0.00018 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+|+|++||||||+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999997
No 360
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.26 E-value=0.00016 Score=52.13 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-++++|+.|||||||++.+.+-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 34789999999999999999854
No 361
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.26 E-value=0.00019 Score=48.72 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+.+.|++.|++||||||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999886
No 362
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.24 E-value=0.00017 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-++++|+.|||||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 4689999999999999999853
No 363
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.24 E-value=0.00029 Score=45.57 Aligned_cols=25 Identities=28% Similarity=0.431 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...-.+++.|++|+|||+++..+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999998874
No 364
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.24 E-value=0.0002 Score=48.29 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
+.|++.|.+||||||+++.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999986
No 365
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.24 E-value=0.00017 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-++++|+.|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999999853
No 366
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.24 E-value=0.00016 Score=47.57 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
....|++.|.+||||||+.+.+.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999986
No 367
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.24 E-value=0.0002 Score=50.19 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...-|++.|++||||||+++.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999963
No 368
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.24 E-value=0.00018 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-++++|+.|||||||++.+.+-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 35689999999999999999853
No 369
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.23 E-value=0.00022 Score=46.51 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+++|.+||||||+++.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 45678999999999999999986
No 370
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.23 E-value=0.00014 Score=45.82 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-.++++|++|+|||||++.+.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999974
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.22 E-value=0.00016 Score=48.66 Aligned_cols=23 Identities=17% Similarity=0.344 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
....|+|+|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34579999999999999999986
No 372
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.22 E-value=0.00022 Score=46.72 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 373
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.22 E-value=0.00039 Score=51.31 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.=-++|+|++|||||||++.+.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 3334689999999999999999974
No 374
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.21 E-value=0.00023 Score=49.15 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999863
No 375
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.21 E-value=0.00024 Score=50.30 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+...|+|+|+.|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999999874
No 376
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.21 E-value=0.00036 Score=48.56 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999974
No 377
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.20 E-value=0.0002 Score=52.08 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-++++|+.|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 4689999999999999999854
No 378
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.20 E-value=0.0002 Score=51.98 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-++++|+.|||||||++.+.+-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 35689999999999999999853
No 379
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.20 E-value=0.00019 Score=51.37 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
..-.++|+|++|||||||++.+.+-
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999853
No 380
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.19 E-value=0.00016 Score=52.35 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=23.1
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
..++.-.++|+|++|||||||++.+.+-
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3445567999999999999999999843
No 381
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.18 E-value=0.00029 Score=46.36 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+..|+++|..||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999999999863
No 382
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.18 E-value=0.00031 Score=51.13 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.-.++|+|++||||||+++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445689999999999999999974
No 383
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.18 E-value=0.00022 Score=49.11 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
-|+|+|++|||||||.+.+.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 37899999999999999986
No 384
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.17 E-value=0.00025 Score=46.54 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999963
No 385
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.17 E-value=0.0003 Score=45.27 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
..++++|.+|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999973
No 386
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.15 E-value=0.00026 Score=45.50 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.|++.|.+||||||+.+.|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999886
No 387
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.14 E-value=0.00018 Score=49.43 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
....|+++|++||||||+.+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999863
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.14 E-value=0.00033 Score=45.38 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...|+++|.+||||||+.+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999864
No 389
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.14 E-value=0.00057 Score=46.15 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
..-.+++.|++|+|||++++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999863
No 390
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.0063 Score=45.15 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=22.6
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
...+.+--|++.|+||+|||+|++++.
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 334455679999999999999999997
No 391
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.14 E-value=0.00019 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=15.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
...|++.|.+||||||+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999986
No 392
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.13 E-value=0.00027 Score=45.98 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.|+++|.+||||||+.+.|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999886
No 393
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.12 E-value=0.00026 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
=.++++|+.|||||||++.+.+
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 3578999999999999999984
No 394
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.12 E-value=0.00028 Score=48.40 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-++++|++|+|||||++.+.+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999974
No 395
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.11 E-value=0.0003 Score=45.69 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-.+|+|+.|||||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999863
No 396
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.11 E-value=0.00034 Score=48.90 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+.+.|+|+|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45779999999999999999986
No 397
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.11 E-value=0.00016 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-++++|+.|||||||++.+.+-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 35789999999999999999853
No 398
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.10 E-value=0.00034 Score=45.67 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
..|++.|.+||||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999986
No 399
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.10 E-value=0.00022 Score=53.99 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
..-.++|+|++||||||+++.+.+-
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3345999999999999999999853
No 400
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.09 E-value=0.00063 Score=42.52 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=25.8
Q ss_pred HHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 6 SILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.+.+.+.... .....|++.|++|+|||++++.+...
T Consensus 12 ~~~~~~~~~a-~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 12 QYRRRLQQLS-ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHT-TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3444443332 34567999999999999999999743
No 401
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.08 E-value=0.00027 Score=47.84 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
.+..-|++.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567899999999999999998753
No 402
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.08 E-value=0.00037 Score=44.59 Aligned_cols=20 Identities=40% Similarity=0.700 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.|++.|.+||||||+.+.|.
T Consensus 9 ~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999886
No 403
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.07 E-value=0.00011 Score=49.05 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
-|+|.|.+||||||+++.|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999986
No 404
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.06 E-value=0.00075 Score=47.80 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=25.5
Q ss_pred HHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 6 SILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.+++........-.+++.|++|+|||+|+..+..
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 344444443322356899999999999999998873
No 405
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.06 E-value=0.00068 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=20.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+..-|+++|.+||||||+++.+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 445678999999999999999886
No 406
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.06 E-value=0.00034 Score=47.07 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
--++++|++|+|||||+..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 357889999999999999997
No 407
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.06 E-value=0.00075 Score=44.84 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999873
No 408
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.05 E-value=0.00047 Score=46.24 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=18.1
Q ss_pred eE-EEEEcCCCCCHHHHHHHHh
Q 030000 20 ME-LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~-i~v~G~~~~GKstli~~~~ 40 (184)
.| |+++|+|||||+|.+..+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 44 5689999999999999886
No 409
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.05 E-value=0.00041 Score=49.01 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.--++++|+.||||||+++.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 3467899999999999999987
No 410
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.05 E-value=0.00078 Score=46.70 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
......+++.|++|+|||+++..+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 45567899999999999999999974
No 411
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0003 Score=52.61 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=22.6
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...+.-.++|+|+.|||||||++.+.+
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHH
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344556799999999999999999974
No 412
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.01 E-value=0.00016 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=-++++|+.|||||||++.+.+-
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35789999999999999999854
No 413
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.01 E-value=0.003 Score=42.04 Aligned_cols=68 Identities=9% Similarity=-0.045 Sum_probs=44.5
Q ss_pred cCEEEEEEEcCCc-cchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCccc
Q 030000 62 GNVTIKLWDLGGQ-RRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKSE 135 (184)
Q Consensus 62 ~~~~~~~~d~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 135 (184)
..+.+.++|+|+. ... .....+..+|.++++...+ ..+.......+..+.... +.++.+++|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 4578999999986 433 2344567799999999875 334444444444443211 466889999998654
No 414
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.01 E-value=0.014 Score=40.24 Aligned_cols=66 Identities=8% Similarity=-0.050 Sum_probs=44.3
Q ss_pred cCEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCC
Q 030000 62 GNVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 62 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D 132 (184)
..+.+.++|+|+... ......+..+|.+++++..+ ..+..........+ .... .+.++.+|+|+.+
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l-~~~~-~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFV-RKLN-LFLPIFLIITRFK 208 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHH-HTTT-CCCCEEEEEEEEC
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHH-HHHh-ccCCEEEEEeccc
Confidence 347899999998543 23455566799999999975 44555555544444 3322 3467889999994
No 415
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.00 E-value=0.00042 Score=48.28 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-++++|++|+|||||++.+.+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 389999999999999999974
No 416
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.00 E-value=0.00066 Score=47.33 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.....+++.|++|+|||++++.+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456799999999999999999974
No 417
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.99 E-value=0.00093 Score=48.06 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhh-ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 4 LDSILNWLRSLF-FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+.+.+.+.... .....+|+++|++|+||||+.+.+.
T Consensus 8 ~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 8 ADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp HHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHH
Confidence 444445554332 2344679999999999999998776
No 418
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.99 E-value=0.0005 Score=46.43 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+++++++|++||||||+...+.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 46899999999999999999886
No 419
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.99 E-value=0.00038 Score=49.87 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
-.+++.|++|+|||||++.+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999999974
No 420
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.98 E-value=0.00045 Score=43.51 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3688999999999999986
No 421
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.98 E-value=0.00069 Score=47.78 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...-.|++.|++|+|||++++.+..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 3445699999999999999999974
No 422
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.97 E-value=0.00045 Score=48.54 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.-+++.|++|+|||+|++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345677889999999999999973
No 423
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.97 E-value=0.00059 Score=46.18 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+..-|++.|++||||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999999999863
No 424
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.96 E-value=0.00068 Score=49.27 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.++|.|++|+||||+++.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 425
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.0031 Score=44.82 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
..+.-.+.+.|++|+|||++++.++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999973
No 426
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.93 E-value=0.00051 Score=49.48 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=23.9
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
...+.=+++++|+.|+|||||++.+.+..
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455689999999999999999998653
No 427
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.92 E-value=0.0005 Score=48.30 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
--++|+|++|+|||||+..+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3578999999999999998873
No 428
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.91 E-value=0.00056 Score=45.67 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.--++++|++|+|||||+..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999985
No 429
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.91 E-value=0.00055 Score=47.04 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...+++.|++|+||||+++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34699999999999999999974
No 430
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.91 E-value=0.0014 Score=44.11 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
--+++.|++|+||||+++.+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999873
No 431
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.90 E-value=0.00063 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.--++++|+.||||||++..+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 3467899999999999999987
No 432
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.90 E-value=0.00058 Score=48.60 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-++|+|..|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4579999999999999999854
No 433
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.90 E-value=0.00057 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.-.|+++|++||||||+.+.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999986
No 434
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.88 E-value=0.00062 Score=42.47 Aligned_cols=35 Identities=9% Similarity=0.029 Sum_probs=25.0
Q ss_pred HHHHHHhhhhccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 6 SILNWLRSLFFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.+.+.... .....|++.|++|+|||++++.+..
T Consensus 15 ~l~~~~~~~~-~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 15 EMNREVEAAA-KRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp HHHHHHHHHH-TCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred HHHHHHHHHh-CCCCcEEEECCCCccHHHHHHHHHH
Confidence 3444444332 3446799999999999999998863
No 435
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.88 E-value=0.00062 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.--++++|++|+|||||+..+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 334578999999999999999986
No 436
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.88 E-value=0.0015 Score=46.10 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
....+++.|++|+|||++++.+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 44579999999999999998665
No 437
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.001 Score=49.22 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 16 FKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 16 ~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.+.+--|++.|+||+|||+|++++.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHH
Confidence 3444569999999999999999997
No 438
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.85 E-value=0.00074 Score=47.49 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
..|+++|.+||||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999974
No 439
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.85 E-value=0.047 Score=38.16 Aligned_cols=67 Identities=18% Similarity=0.007 Sum_probs=42.0
Q ss_pred CEEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEEEEEeCCCcc
Q 030000 63 NVTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLLVLGNKIDKS 134 (184)
Q Consensus 63 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~ 134 (184)
.+.+.++|+|+..... ........+|.+++|+.... .+..........+... . ...+=+|+|++|..
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~-g--~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQN-G--IPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHT-T--CCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhC-C--CCEEEEEEcCcccc
Confidence 3679999999864322 12334566999999999763 3555555555544332 1 22345778999853
No 440
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.84 E-value=0.00096 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999999864
No 441
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.83 E-value=0.00066 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.=.++++|+.|||||||++.+.+
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 34689999999999999999974
No 442
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.00083 Score=49.75 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=23.4
Q ss_pred hhhccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 13 SLFFKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 13 ~~~~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
......+--|++.|+||+|||+|++++.+
T Consensus 209 ~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 209 DMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp HHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred hCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 33344566799999999999999999973
No 443
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.82 E-value=0.00064 Score=51.00 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
-.++++|+.|||||||++.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHh
Confidence 457899999999999999997
No 444
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.81 E-value=0.00084 Score=45.55 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHh
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+...|+++|.+||||||+.+.+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999886
No 445
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.81 E-value=0.0015 Score=44.83 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
....|++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999974
No 446
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.80 E-value=0.00074 Score=50.20 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=23.7
Q ss_pred hccceeEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 15 FFKQEMELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 15 ~~~~~~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
...+.=+++++|++|||||||++.+.+..
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34455689999999999999999998543
No 447
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.79 E-value=0.00096 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
-++++|+.|||||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999999854
No 448
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.79 E-value=0.00039 Score=48.81 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=17.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.+-|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998863
No 449
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.77 E-value=0.00098 Score=48.53 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445789999999999999999974
No 450
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.75 E-value=0.0012 Score=50.99 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.=.++++|+.|||||||++.+.+-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3346889999999999999999743
No 451
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.74 E-value=0.00087 Score=48.65 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
.+|+|+.|||||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4589999999999999987
No 452
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.74 E-value=0.00086 Score=46.71 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
--++|+|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999999874
No 453
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.74 E-value=0.00099 Score=44.05 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 030000 21 ELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~ 40 (184)
.|++.|.+||||||+.+.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la 23 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
No 454
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.0012 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
.++++|+.|||||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999999853
No 455
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.0012 Score=48.34 Aligned_cols=30 Identities=33% Similarity=0.369 Sum_probs=23.7
Q ss_pred HhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 11 LRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 11 ~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+..+..+.+--|++.|+||+|||+|++++.
T Consensus 174 f~~~gi~~prGvLL~GPPGTGKTllAkAiA 203 (405)
T 4b4t_J 174 FESLGIAQPKGVILYGPPGTGKTLLARAVA 203 (405)
T ss_dssp HHHHTCCCCCCEEEESCSSSSHHHHHHHHH
T ss_pred HHhCCCCCCCceEEeCCCCCCHHHHHHHHH
Confidence 333344455679999999999999999997
No 456
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.73 E-value=0.00068 Score=52.43 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.=.++++|+.|||||||++.+.+
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999974
No 457
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.71 E-value=0.00076 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.=.++++|+.|||||||++.+.+
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 34789999999999999999974
No 458
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.68 E-value=0.0024 Score=44.98 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHh
Q 030000 19 EMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~ 40 (184)
.-.|+++|+.|+||||++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999999886
No 459
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.67 E-value=0.00099 Score=46.73 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-.+++.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 46799999999999999999974
No 460
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.67 E-value=0.0015 Score=49.86 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~ 43 (184)
=.++|+|+.|||||||++.+.+-.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999998643
No 461
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.67 E-value=0.0013 Score=50.16 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~ 42 (184)
.++++|+.|||||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999854
No 462
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.66 E-value=0.0018 Score=46.41 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
+++.|++|+||||+++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999873
No 463
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.65 E-value=0.0026 Score=46.16 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=25.2
Q ss_pred HHHHHHhhhh-ccceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 6 SILNWLRSLF-FKQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 6 ~~~~~~~~~~-~~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.+++.... ....-.+++.|++|+|||++++.+..
T Consensus 31 ~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 31 DAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3444444332 22345789999999999999999974
No 464
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.64 E-value=0.002 Score=45.99 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
....|++.|++|+|||++++.+..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 345689999999999999999963
No 465
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.64 E-value=0.0016 Score=50.49 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~ 42 (184)
=.++++|+.|||||||++.+.+-
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 35789999999999999999753
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.64 E-value=0.0012 Score=43.47 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 19 EMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
...|+++|++|+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999743
No 467
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.63 E-value=0.0011 Score=48.99 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...-|+++|.+||||||+.+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999973
No 468
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.62 E-value=0.0024 Score=45.77 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
.+++.|++|+||||+++.+.+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999874
No 469
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.61 E-value=0.0014 Score=42.58 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 030000 22 LSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~ 42 (184)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999844
No 470
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.60 E-value=0.0013 Score=44.66 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
--+++.|++|+|||||+..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999987775
No 471
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.59 E-value=0.00087 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.=.++++|+.|||||||++.+.+
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999874
No 472
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.58 E-value=0.0019 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 030000 21 ELSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~~~ 43 (184)
.++++|+.|||||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998643
No 473
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0018 Score=48.14 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=24.2
Q ss_pred HhhhhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 11 LRSLFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 11 ~~~~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
+..+..+.+--|++.|+||+|||+|++++.
T Consensus 235 f~~~Gi~pprGILLyGPPGTGKTlLAkAiA 264 (467)
T 4b4t_H 235 FATLGIDPPKGILLYGPPGTGKTLCARAVA 264 (467)
T ss_dssp HHHHTCCCCSEEEECSCTTSSHHHHHHHHH
T ss_pred HHHCCCCCCCceEeeCCCCCcHHHHHHHHH
Confidence 333444566779999999999999999997
No 474
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.57 E-value=0.0013 Score=47.42 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
+.--+.|+|++|||||||+..+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3345789999999999999999854
No 475
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.57 E-value=0.0027 Score=47.69 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...-.++++|++|+|||++++.+..
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999998863
No 476
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.56 E-value=0.00064 Score=52.37 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 344788999999999999998874
No 477
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.55 E-value=0.0014 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
-.+++.|++|+|||||++.+.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999874
No 478
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.54 E-value=0.0015 Score=46.48 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
..|+|+|++|||||||...+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999887
No 479
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.53 E-value=0.0014 Score=46.88 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
.-|+|+|++|||||||...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHH
Confidence 468999999999999999887
No 480
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.002 Score=46.31 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 030000 22 LSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~ 41 (184)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998875
No 481
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.52 E-value=0.00097 Score=46.03 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHh
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
++...|++.|..||||||+++.|.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 455779999999999999999886
No 482
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.52 E-value=0.0014 Score=43.86 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.+.|+++|.+||||||+.+.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998863
No 483
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.51 E-value=0.0017 Score=43.03 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 030000 22 LSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~ 40 (184)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 3588999999999999885
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.51 E-value=0.0019 Score=43.94 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-|++.|..||||||+++.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999999873
No 485
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.50 E-value=0.0016 Score=46.11 Aligned_cols=21 Identities=24% Similarity=0.533 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030000 20 MELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~ 40 (184)
--|+++|++||||||++..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 457899999999999999887
No 486
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0021 Score=49.82 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 030000 22 LSLIGLQNAGKTSLVNTIATGG 43 (184)
Q Consensus 22 i~v~G~~~~GKstli~~~~~~~ 43 (184)
++++|+.|||||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999998643
No 487
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.49 E-value=0.019 Score=39.80 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=41.8
Q ss_pred EEEEEEEcCCccchhHhHHhhccCCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcEE-EEEeCCCc
Q 030000 64 VTIKLWDLGGQRRFRTMWERYCRGVSAILYVVDAADRDSVPIARSELHELLMKPSLSGIPLL-VLGNKIDK 133 (184)
Q Consensus 64 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~ 133 (184)
+.+.++|+|+..... ........+|.+++|+... ..+..........+.. .+.+++ +|+|+.|.
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~-~~~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSE-NNNKDEVKKGKELIEA----TGAKLLGVVLNRMPK 256 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETT-SCCHHHHHHHHHHHHT----TTCEEEEEEEEEECC
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCC-CCcHHHHHHHHHHHHh----CCCCEEEEEEeCCcC
Confidence 678999999854321 1122334589999999975 4466666665554432 356666 88999985
No 488
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.002 Score=47.49 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=22.6
Q ss_pred hhccceeEEEEEcCCCCCHHHHHHHHh
Q 030000 14 LFFKQEMELSLIGLQNAGKTSLVNTIA 40 (184)
Q Consensus 14 ~~~~~~~~i~v~G~~~~GKstli~~~~ 40 (184)
.....+--|++.|+||+|||+|++++.
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA 237 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVA 237 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHH
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHH
Confidence 334455679999999999999999997
No 489
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.47 E-value=0.00087 Score=46.29 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
..+++.|++|+|||++++.+..
T Consensus 45 ~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3488999999999999999974
No 490
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.45 E-value=0.0017 Score=47.00 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-.++|.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999874
No 491
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.44 E-value=0.0016 Score=49.55 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=18.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHH
Q 030000 19 EMELSLIGLQNAGKTSLVNTI 39 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~ 39 (184)
.--++|+|++|||||||++.+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 345789999999999999995
No 492
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.43 E-value=0.002 Score=52.41 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhcCCC
Q 030000 20 MELSLIGLQNAGKTSLVNTIATGGY 44 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~~~~ 44 (184)
=.++++|+.|||||||++.+.++..
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4679999999999999999986543
No 493
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.42 E-value=0.0019 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999973
No 494
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.42 E-value=0.0023 Score=45.09 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999999873
No 495
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.41 E-value=0.0021 Score=45.48 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 030000 21 ELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 21 ~i~v~G~~~~GKstli~~~~~ 41 (184)
-|+|+|++|||||||...+..
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 478999999999999999973
No 496
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.40 E-value=0.0038 Score=42.98 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHhcC
Q 030000 18 QEMELSLIGLQNAGKTSLVNTIATG 42 (184)
Q Consensus 18 ~~~~i~v~G~~~~GKstli~~~~~~ 42 (184)
....|++.|++|+|||++++.+...
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3467999999999999999999743
No 497
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.38 E-value=0.004 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.361 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
No 498
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.38 E-value=0.0019 Score=45.97 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHhc
Q 030000 19 EMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 19 ~~~i~v~G~~~~GKstli~~~~~ 41 (184)
.-.|++.|++|+|||+|++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 35699999999999999999974
No 499
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.37 E-value=0.0031 Score=45.68 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHhc
Q 030000 17 KQEMELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 17 ~~~~~i~v~G~~~~GKstli~~~~~ 41 (184)
...-.+++.|++|+||||+++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 3445789999999999999999973
No 500
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.36 E-value=0.005 Score=42.52 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhc
Q 030000 20 MELSLIGLQNAGKTSLVNTIAT 41 (184)
Q Consensus 20 ~~i~v~G~~~~GKstli~~~~~ 41 (184)
-.|++.|++|+|||.|+..+..
T Consensus 105 n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3599999999999999999974
Done!