Query 030001
Match_columns 184
No_of_seqs 118 out of 1278
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:58:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02879 L-ascorbate peroxidas 100.0 1.8E-47 3.8E-52 328.5 16.7 157 1-157 2-158 (251)
2 PLN02364 L-ascorbate peroxidas 100.0 2.4E-47 5.2E-52 327.5 16.4 158 1-158 1-159 (250)
3 PLN02608 L-ascorbate peroxidas 100.0 1.3E-46 2.7E-51 328.7 17.2 154 5-158 3-156 (289)
4 cd00691 ascorbate_peroxidase A 100.0 1.9E-41 4.2E-46 291.2 14.9 153 6-158 2-158 (253)
5 PF00141 peroxidase: Peroxidas 100.0 7.4E-39 1.6E-43 271.2 5.2 134 19-158 1-143 (230)
6 cd00692 ligninase Ligninase an 100.0 9E-37 2E-41 270.7 14.5 142 15-157 16-169 (328)
7 cd00314 plant_peroxidase_like 100.0 4.1E-36 9E-41 255.9 13.8 142 18-159 2-155 (255)
8 cd00649 catalase_peroxidase_1 100.0 1.4E-36 3E-41 275.0 11.0 150 9-158 36-237 (409)
9 PLN03030 cationic peroxidase; 100.0 5.1E-36 1.1E-40 265.4 10.2 136 15-158 37-183 (324)
10 cd00693 secretory_peroxidase H 100.0 5.2E-36 1.1E-40 262.8 10.0 136 15-158 14-163 (298)
11 cd08201 plant_peroxidase_like_ 100.0 7.2E-36 1.6E-40 257.9 7.7 125 30-159 39-165 (264)
12 TIGR00198 cat_per_HPI catalase 100.0 6.4E-35 1.4E-39 278.4 10.7 149 10-158 47-246 (716)
13 PRK15061 catalase/hydroperoxid 100.0 3.5E-33 7.5E-38 265.9 10.8 150 10-159 49-251 (726)
14 cd08200 catalase_peroxidase_2 100.0 6.9E-32 1.5E-36 236.1 14.3 165 3-173 6-208 (297)
15 PRK15061 catalase/hydroperoxid 100.0 1.2E-27 2.7E-32 228.1 14.8 166 4-175 432-635 (726)
16 TIGR00198 cat_per_HPI catalase 99.9 2.1E-27 4.6E-32 227.0 14.6 149 27-175 442-623 (716)
17 COG0376 KatG Catalase (peroxid 99.9 2.6E-25 5.7E-30 206.2 9.3 149 10-160 62-262 (730)
18 COG0376 KatG Catalase (peroxid 99.5 2.4E-13 5.1E-18 127.2 10.0 139 15-156 450-614 (730)
19 TIGR00875 fsa_talC_mipB fructo 38.2 8.2 0.00018 32.7 -0.7 83 77-168 90-174 (213)
20 PF00043 GST_C: Glutathione S- 34.3 1.4E+02 0.0031 20.2 5.4 37 74-110 33-74 (95)
21 PRK01362 putative translaldola 34.1 12 0.00025 31.8 -0.4 83 77-168 90-174 (214)
22 PRK12309 transaldolase/EF-hand 32.1 36 0.00078 31.5 2.4 88 77-166 143-238 (391)
23 TIGR01911 HesB_rel_seleno HesB 31.0 11 0.00025 27.6 -0.8 32 17-58 8-39 (92)
24 PLN02438 inositol-3-phosphate 28.6 3.7E+02 0.0081 26.1 8.6 112 14-156 204-333 (510)
25 PRK12656 fructose-6-phosphate 28.0 25 0.00054 30.1 0.6 94 77-179 94-189 (222)
26 PRK12655 fructose-6-phosphate 28.0 16 0.00034 31.2 -0.6 95 76-179 91-187 (220)
27 cd00957 Transaldolase_TalAB Tr 27.9 43 0.00093 30.1 2.1 76 90-165 148-231 (313)
28 PRK12346 transaldolase A; Prov 25.6 45 0.00097 30.1 1.8 76 90-165 149-232 (316)
29 cd00439 Transaldolase Transald 24.8 20 0.00043 31.0 -0.5 89 77-167 128-224 (252)
30 KOG1474 Transcription initiati 21.2 43 0.00094 32.8 0.9 35 15-49 266-301 (640)
31 PRK12653 fructose-6-phosphate 21.1 30 0.00065 29.5 -0.2 94 77-179 92-187 (220)
32 cd00956 Transaldolase_FSA Tran 20.6 45 0.00097 28.0 0.8 94 77-179 90-185 (211)
No 1
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=1.8e-47 Score=328.54 Aligned_cols=157 Identities=66% Similarity=1.100 Sum_probs=151.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhhhccccccCCCCCCCCeeEeccccccCcCCCchHHHHHH
Q 030001 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (184)
Q Consensus 1 ~~~~~~~~~~~y~~~v~~v~~~l~~~l~~~~~a~~~LRLaFHDc~t~d~~~~~gGcDgSI~l~~E~~~~~N~gL~~~~~~ 80 (184)
|-|-+|+++++|+++++.++++|.+++++++|+|.+|||+||||+|||..++.|||||||+|.+|+++++|.||+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~E~~~~~N~gL~~~~~~ 81 (251)
T PLN02879 2 VKKSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRL 81 (251)
T ss_pred CcccCCCccHHHHHHHHHHHHHHHHHHhCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChhhccCCCcCChHHHHHH
Confidence 55778999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhhCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCcchh
Q 030001 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGLWASATRILLLSLVATPWEG 157 (184)
Q Consensus 81 i~~iK~~~p~VS~ADlialAa~~AV~~~GGP~i~v~~GR~D~~~s~~~g~lP~p~~~~~~l~~~F~~~gl~~~~~~~ 157 (184)
|++||++++.|||||||+|||++||+++|||.|+|++||+|+.++.++++||.|+.++++|++.|..+||+..++|+
T Consensus 82 i~~iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVA 158 (251)
T PLN02879 82 LDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVFGRMGLNDKDIVA 158 (251)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877764
No 2
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=2.4e-47 Score=327.49 Aligned_cols=158 Identities=68% Similarity=1.129 Sum_probs=152.3
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhhhccccccCCCCCCCCeeEeccccccCcCCCchHHHHHH
Q 030001 1 MTKNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRL 80 (184)
Q Consensus 1 ~~~~~~~~~~~y~~~v~~v~~~l~~~l~~~~~a~~~LRLaFHDc~t~d~~~~~gGcDgSI~l~~E~~~~~N~gL~~~~~~ 80 (184)
|+|+||.+.|+||++++.++++|++++.+++++|.+|||+||||+|||...+.|||||||++.+|+++++|.||.+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~E~~~~~N~gl~~~~~~ 80 (250)
T PLN02364 1 MTKNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRL 80 (250)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccccccCCCccCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhhCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhc-CCCCCcchhh
Q 030001 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGLWASATRILLL-SLVATPWEGA 158 (184)
Q Consensus 81 i~~iK~~~p~VS~ADlialAa~~AV~~~GGP~i~v~~GR~D~~~s~~~g~lP~p~~~~~~l~~~F~~~-gl~~~~~~~~ 158 (184)
|++||+++++|||||||+|||++||+++|||.|+|++||+|+.++.++++||.|+.++++|++.|+.+ ||+.+++|++
T Consensus 81 i~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaL 159 (250)
T PLN02364 81 LDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVAL 159 (250)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHHHHHHHHHHhcCCCHHHheee
Confidence 99999999999999999999999999999999999999999999998999999999999999999975 9988877643
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.3e-46 Score=328.67 Aligned_cols=154 Identities=56% Similarity=0.909 Sum_probs=149.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhhhccccccCCCCCCCCeeEeccccccCcCCCchHHHHHHHHHH
Q 030001 5 YPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPF 84 (184)
Q Consensus 5 ~~~~~~~y~~~v~~v~~~l~~~l~~~~~a~~~LRLaFHDc~t~d~~~~~gGcDgSI~l~~E~~~~~N~gL~~~~~~i~~i 84 (184)
.|++|.+|.++++.+|++|+++++++.++|.+|||+||||+|||..+++|||||||++.+|+++++|.||++++++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~E~~~~~N~gL~~g~~vid~i 82 (289)
T PLN02608 3 APVVDAEYLKEIEKARRDLRALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGANNGLKIAIDLCEPV 82 (289)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecccccCCccccchHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HHhCCCCChHHHHHHHHHHHHHhhCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCcchhh
Q 030001 85 KEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGLWASATRILLLSLVATPWEGA 158 (184)
Q Consensus 85 K~~~p~VS~ADlialAa~~AV~~~GGP~i~v~~GR~D~~~s~~~g~lP~p~~~~~~l~~~F~~~gl~~~~~~~~ 158 (184)
|+++|+|||||||+|||++||+++|||.|+|++||+|+.++.++++||.|+.++++|++.|..+||+.+++|++
T Consensus 83 K~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaL 156 (289)
T PLN02608 83 KAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAKHLRDVFYRMGLSDKDIVAL 156 (289)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhh
Confidence 99999999999999999999999999999999999999999888899999999999999999999988888743
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.9e-41 Score=291.22 Aligned_cols=153 Identities=48% Similarity=0.857 Sum_probs=144.6
Q ss_pred CCCcHHHHH-HHHHHHHHHHHHHhcCCcHHHHHHHHhhhccccccCCCCCCCCeeEeccccccCcCCCchHHHHHHHHHH
Q 030001 6 PTVSEDYKK-AVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPF 84 (184)
Q Consensus 6 ~~~~~~y~~-~v~~v~~~l~~~l~~~~~a~~~LRLaFHDc~t~d~~~~~gGcDgSI~l~~E~~~~~N~gL~~~~~~i~~i 84 (184)
|+|...|-. +++.||+.|+++++++.+++.+|||+||||++||.+.+.|||||++++.+|+++++|.+|.+++++|++|
T Consensus 2 ~~~~~~~~~~~~~~V~~~v~~~~~~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~i 81 (253)
T cd00691 2 PVVSAAYAAKDLEAARNDIAKLIDDKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPI 81 (253)
T ss_pred CcccccccHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccCCCCCCccccchhhcCCccccchHHHHHHHHHH
Confidence 778888876 8999999999998899999999999999999999999999999999999999999999998899999999
Q ss_pred HHhCCCCChHHHHHHHHHHHHHhhCCCccccCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHhcCCCCCcchhh
Q 030001 85 KEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP---QEGRLPDAKQGLWASATRILLLSLVATPWEGA 158 (184)
Q Consensus 85 K~~~p~VS~ADlialAa~~AV~~~GGP~i~v~~GR~D~~~s~---~~g~lP~p~~~~~~l~~~F~~~gl~~~~~~~~ 158 (184)
|+++|+|||||||+|||++||+.+|||.|+|++||+|+.++. ++++||.|+.++++|++.|+.+||+..++|++
T Consensus 82 K~~~~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaL 158 (253)
T cd00691 82 KKKYPDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVAL 158 (253)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHh
Confidence 999999999999999999999999999999999999999884 78899999999999999999999988777743
No 5
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=7.4e-39 Score=271.24 Aligned_cols=134 Identities=30% Similarity=0.469 Sum_probs=117.0
Q ss_pred HHHHHHHHHh-cCCcHHHHHHHHhhhccccccCCCCCCCCeeEec-cccccCcCCCchHHHHHHHHHHHHhC----C-CC
Q 030001 19 CKRKLRGFIA-EKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL-AAEQAHSANNGLDIAVRLLEPFKEQF----P-TI 91 (184)
Q Consensus 19 v~~~l~~~l~-~~~~a~~~LRLaFHDc~t~d~~~~~gGcDgSI~l-~~E~~~~~N~gL~~~~~~i~~iK~~~----p-~V 91 (184)
||++|++.++ +++++|++|||+||||++| |||||||++ .+|+++++|.||.+++++|++||+++ | .|
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~------~GcDgSil~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVY------GGCDGSILLFSAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTH------TSSSSGGGGSTTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccc------cccccceeccccccccccccCcceeeechhhHHhhhcccccCCC
Confidence 5788888765 7999999999999999965 999999976 68999999999988999999999986 4 69
Q ss_pred ChHHHHHHHHHHHHHhhCCCccccCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHhcCCCCCcchhh
Q 030001 92 SYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEG--RLPDAKQGLWASATRILLLSLVATPWEGA 158 (184)
Q Consensus 92 S~ADlialAa~~AV~~~GGP~i~v~~GR~D~~~s~~~g--~lP~p~~~~~~l~~~F~~~gl~~~~~~~~ 158 (184)
||||||+||+++||+.+|||.|+|++||+|+.++.+.+ +||.|..++++|++.|+.+||+.+++|++
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaL 143 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVAL 143 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHH
T ss_pred CHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcce
Confidence 99999999999999999999999999999999996543 59999999999999999999988777744
No 6
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=9e-37 Score=270.67 Aligned_cols=142 Identities=27% Similarity=0.425 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHh-cCCcHH---HHHHHHhhhccccc-----cCCCCCCCCeeEecc--ccccCcCCCchHHHHHHHHH
Q 030001 15 AVEKCKRKLRGFIA-EKNCAP---LMLRIAWHSAGTYD-----VKTKTGGPFGTMRLA--AEQAHSANNGLDIAVRLLEP 83 (184)
Q Consensus 15 ~v~~v~~~l~~~l~-~~~~a~---~~LRLaFHDc~t~d-----~~~~~gGcDgSI~l~--~E~~~~~N~gL~~~~~~i~~ 83 (184)
+...++++|++.|. ++.|++ .+|||+||||++|+ ..++.|||||||++. .|+++++|.||+..++.|++
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~~E~~~~~N~gL~~vvd~lk~ 95 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDDIETAFHANIGLDEIVEALRP 95 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCcccccCCCCCCHHHHHHHHHH
Confidence 45678999998754 666655 59999999999999 467899999999875 48999999999989999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHH-hhCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCcchh
Q 030001 84 FKEQFPTISYADLYQLAGVVGVE-VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGLWASATRILLLSLVATPWEG 157 (184)
Q Consensus 84 iK~~~p~VS~ADlialAa~~AV~-~~GGP~i~v~~GR~D~~~s~~~g~lP~p~~~~~~l~~~F~~~gl~~~~~~~ 157 (184)
++++++ |||||||||||++||+ ++|||.|+|++||+|+.++.++++||.|+.++++|+++|+.+||+..++|+
T Consensus 96 ~~e~~c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv~~l~~~F~~~Gf~~~E~Va 169 (328)
T cd00692 96 FHQKHN-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSVDKILARFADAGFSPDELVA 169 (328)
T ss_pred HHHhcC-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCHHHHHHHHHHcCCCHHHHhh
Confidence 998885 9999999999999999 569999999999999999999999999999999999999999998887774
No 7
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=4.1e-36 Score=255.86 Aligned_cols=142 Identities=39% Similarity=0.584 Sum_probs=128.7
Q ss_pred HHHHHHHHHHh-cCCcHHHHHHHHhhhccccccCC-CCCCCCeeEeccccccCcCCCchHHHHHHHHHHHHhCC---CCC
Q 030001 18 KCKRKLRGFIA-EKNCAPLMLRIAWHSAGTYDVKT-KTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP---TIS 92 (184)
Q Consensus 18 ~v~~~l~~~l~-~~~~a~~~LRLaFHDc~t~d~~~-~~gGcDgSI~l~~E~~~~~N~gL~~~~~~i~~iK~~~p---~VS 92 (184)
.++..|.+.+. ++.+++.+|||+||||++|+..+ +.|||||||++.+|+++|+|.||.+++++|++||.+++ .||
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~~~~vS 81 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEPELDRPENGGLDKALRALEPIKSAYDGGNPVS 81 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccccccCcccccHHHHHHHHHHHHHHcCCCCccc
Confidence 46777777654 78899999999999999999886 78999999999999999999999899999999999995 799
Q ss_pred hHHHHHHHHHHHHHhh--CCCccccCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHHHHhcCCCCCcchhhh
Q 030001 93 YADLYQLAGVVGVEVT--GGPDIPFHPGRDDKA-----EPPQEGRLPDAKQGLWASATRILLLSLVATPWEGAT 159 (184)
Q Consensus 93 ~ADlialAa~~AV~~~--GGP~i~v~~GR~D~~-----~s~~~g~lP~p~~~~~~l~~~F~~~gl~~~~~~~~~ 159 (184)
|||||+||+++||+.+ |||.|+|++||+|+. .+.|.+++|.+..+++++++.|..+||+..++|+++
T Consensus 82 ~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~ 155 (255)
T cd00314 82 RADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALS 155 (255)
T ss_pred HHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhc
Confidence 9999999999999999 999999999999998 567888999999999999999999999665555443
No 8
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.4e-36 Score=274.96 Aligned_cols=150 Identities=35% Similarity=0.532 Sum_probs=136.9
Q ss_pred cHHHHH-HHHHHHHHHHHHHhcC---------CcHHHHHHHHhhhccccccCCCCCCCC-eeEeccccccCcCCCchHHH
Q 030001 9 SEDYKK-AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIA 77 (184)
Q Consensus 9 ~~~y~~-~v~~v~~~l~~~l~~~---------~~a~~~LRLaFHDc~t~d~~~~~gGcD-gSI~l~~E~~~~~N~gL~~~ 77 (184)
-++|++ +++++|++|.++|+++ +|+|.+|||+||+++|||..+++||+| |+|||.+|++|++|.||+++
T Consensus 36 ~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~pe~~~~~N~gL~~a 115 (409)
T cd00649 36 AEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAPLNSWPDNVNLDKA 115 (409)
T ss_pred HHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccccccCcHhhhhHHHH
Confidence 355666 7899999999998854 799999999999999999999999998 79999999999999999999
Q ss_pred HHHHHHHHHhCC-CCChHHHHHHHHHHHHHhhCCCccccCCCCCCCCCCC------------------------------
Q 030001 78 VRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------------------------ 126 (184)
Q Consensus 78 ~~~i~~iK~~~p-~VS~ADlialAa~~AV~~~GGP~i~v~~GR~D~~~s~------------------------------ 126 (184)
+++|++||++|| .||+||||+|||++|||.+|||.|+|.+||.|+..+.
T Consensus 116 ~~~L~pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~ 195 (409)
T cd00649 116 RRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAV 195 (409)
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhh
Confidence 999999999998 7999999999999999999999999999999996531
Q ss_pred --------CCC--CCCCCCCCHHHHHHHHHhcCCCCCcchhh
Q 030001 127 --------QEG--RLPDAKQGLWASATRILLLSLVATPWEGA 158 (184)
Q Consensus 127 --------~~g--~lP~p~~~~~~l~~~F~~~gl~~~~~~~~ 158 (184)
|+| .+|+|..++++|++.|..+||+..++|++
T Consensus 196 ~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL 237 (409)
T cd00649 196 QMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVAL 237 (409)
T ss_pred hccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeee
Confidence 345 69999999999999999999987777665
No 9
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=5.1e-36 Score=265.40 Aligned_cols=136 Identities=21% Similarity=0.266 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHH-hcCCcHHHHHHHHhhhccccccCCCCCCCCeeEecc---ccccCcCCCchHHHHHHHHHHHHhC--
Q 030001 15 AVEKCKRKLRGFI-AEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLA---AEQAHSANNGLDIAVRLLEPFKEQF-- 88 (184)
Q Consensus 15 ~v~~v~~~l~~~l-~~~~~a~~~LRLaFHDc~t~d~~~~~gGcDgSI~l~---~E~~~~~N~gL~~~~~~i~~iK~~~-- 88 (184)
+.+.|++.|++.+ +++..++++|||+||||| ++||||||+++ .|++.++|.+| +++++|+.||+.+
T Consensus 37 aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCf-------v~GCDaSvLl~~~~~Ek~a~~N~~l-~Gf~~i~~iK~~~e~ 108 (324)
T PLN03030 37 AESIVRKTVQSHFQSNPAIAPGLLRMHFHDCF-------VRGCDASILIDGSNTEKTALPNLLL-RGYDVIDDAKTQLEA 108 (324)
T ss_pred HHHHHHHHHHHHHhhCcccchhhhhhhhhhhe-------ecCCceEEeeCCCcccccCCCCcCc-chHHHHHHHHHHHHh
Confidence 5667899999875 589999999999999999 79999999995 59999999998 6999999999864
Q ss_pred --C-CCChHHHHHHHHHHHHHhhCCCccccCCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHhcCCCCCcchhh
Q 030001 89 --P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP--PQEGRLPDAKQGLWASATRILLLSLVATPWEGA 158 (184)
Q Consensus 89 --p-~VS~ADlialAa~~AV~~~GGP~i~v~~GR~D~~~s--~~~g~lP~p~~~~~~l~~~F~~~gl~~~~~~~~ 158 (184)
| +|||||||+||+++||+.+|||.|+|++||+|+.++ ++.++||.|+.++++|++.|+.+||+.+|+|++
T Consensus 109 ~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~DlVaL 183 (324)
T PLN03030 109 ACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLNTQDLVTL 183 (324)
T ss_pred hCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCCHHHheee
Confidence 7 899999999999999999999999999999999876 344589999999999999999999999999854
No 10
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=5.2e-36 Score=262.82 Aligned_cols=136 Identities=23% Similarity=0.292 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHH-hcCCcHHHHHHHHhhhccccccCCCCCCCCeeEecc------ccccCcCCCchHHHHHHHHHHHHh
Q 030001 15 AVEKCKRKLRGFI-AEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLA------AEQAHSANNGLDIAVRLLEPFKEQ 87 (184)
Q Consensus 15 ~v~~v~~~l~~~l-~~~~~a~~~LRLaFHDc~t~d~~~~~gGcDgSI~l~------~E~~~~~N~gL~~~~~~i~~iK~~ 87 (184)
+.+.|++.|++.+ ++++++|++|||+||||+ ++||||||+|+ +|+++++|.+| +++++|++||++
T Consensus 14 ~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~-------v~GcDaSill~~~~~~~~E~~~~~N~~l-~g~~~i~~iK~~ 85 (298)
T cd00693 14 AESIVRSVVRAAVKADPRLAAALLRLHFHDCF-------VRGCDASVLLDSTANNTSEKDAPPNLSL-RGFDVIDDIKAA 85 (298)
T ss_pred hHHHHHHHHHHHHHhCCCcCchhhhhhhHhhh-------ccCcceeEEecCCCCCchhccCCCCCCc-chhHHHHHHHHH
Confidence 5567888888864 588999999999999999 69999999985 59999999999 699999999986
Q ss_pred C----C-CCChHHHHHHHHHHHHHhhCCCccccCCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHhcCCCCCcchhh
Q 030001 88 F----P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP--PQEGRLPDAKQGLWASATRILLLSLVATPWEGA 158 (184)
Q Consensus 88 ~----p-~VS~ADlialAa~~AV~~~GGP~i~v~~GR~D~~~s--~~~g~lP~p~~~~~~l~~~F~~~gl~~~~~~~~ 158 (184)
+ | .|||||||+|||++||+.+|||.|+|++||+|+.++ .+.++||.|+.++++|++.|+.+||+..++|++
T Consensus 86 ~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~d~VaL 163 (298)
T cd00693 86 LEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVTDLVAL 163 (298)
T ss_pred HHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHHHheee
Confidence 4 6 899999999999999999999999999999999866 334789999999999999999999988888754
No 11
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=7.2e-36 Score=257.91 Aligned_cols=125 Identities=27% Similarity=0.412 Sum_probs=112.0
Q ss_pred CCcHHHHHHHHhhhccccccCCCCCCCCeeEeccccccCcCCCchH--HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Q 030001 30 KNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLD--IAVRLLEPFKEQFPTISYADLYQLAGVVGVEV 107 (184)
Q Consensus 30 ~~~a~~~LRLaFHDc~t~d~~~~~gGcDgSI~l~~E~~~~~N~gL~--~~~~~i~~iK~~~p~VS~ADlialAa~~AV~~ 107 (184)
+..++.+|||+||||+|||..+++|||||||++ |..++||.|+. ..+..++.|+. ++|||||||||||++||+.
T Consensus 39 ~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIll--e~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV~~ 114 (264)
T cd08201 39 RQAAAEWLRTAFHDMATHNVDDGTGGLDASIQY--ELDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSVAS 114 (264)
T ss_pred ccHHHHHHHHHHHhhcCcccCCCCCCCCcceee--cCCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999 67889999875 34556666543 3899999999999999999
Q ss_pred hCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCcchhhh
Q 030001 108 TGGPDIPFHPGRDDKAEPPQEGRLPDAKQGLWASATRILLLSLVATPWEGAT 159 (184)
Q Consensus 108 ~GGP~i~v~~GR~D~~~s~~~g~lP~p~~~~~~l~~~F~~~gl~~~~~~~~~ 159 (184)
||||.|+|++||+|+.++.+++ ||.|+.++++|++.|+.+||+.+++|+++
T Consensus 115 ~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLs 165 (264)
T cd08201 115 CGGPVVPFRAGRIDATEAGQAG-VPEPQTDLGTTTESFRRQGFSTSEMIALV 165 (264)
T ss_pred cCCCeecccccCCCcccccccc-CCCCccCHHHHHHHHHHcCCChHHHheee
Confidence 9999999999999999998887 99999999999999999999888887554
No 12
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=6.4e-35 Score=278.36 Aligned_cols=149 Identities=32% Similarity=0.492 Sum_probs=135.1
Q ss_pred HHHHH-HHHHHHHHHHHHHhcC---------CcHHHHHHHHhhhccccccCCCCCCCC-eeEeccccccCcCCCchHHHH
Q 030001 10 EDYKK-AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAV 78 (184)
Q Consensus 10 ~~y~~-~v~~v~~~l~~~l~~~---------~~a~~~LRLaFHDc~t~d~~~~~gGcD-gSI~l~~E~~~~~N~gL~~~~ 78 (184)
++|++ +++++|++|+++|+++ +|+|.+|||+||+++|||..+++|||+ |+|||.+|++|++|.+|++++
T Consensus 47 ~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P~~sw~~N~~Ldka~ 126 (716)
T TIGR00198 47 EEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAPLNSWPDNVNLDKAR 126 (716)
T ss_pred HHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecccccCchhhhhHHHHH
Confidence 44555 7888999999998864 799999999999999999999999996 799999999999999999999
Q ss_pred HHHHHHHHhCC-CCChHHHHHHHHHHHHHhhCCCccccCCCCCCCCCCC-------------------------------
Q 030001 79 RLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------------------------- 126 (184)
Q Consensus 79 ~~i~~iK~~~p-~VS~ADlialAa~~AV~~~GGP~i~v~~GR~D~~~s~------------------------------- 126 (184)
++|++||++|| +|||||||+|||++|||.+|||.|+|.+||+|+..+.
T Consensus 127 ~lL~pIk~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~ 206 (716)
T TIGR00198 127 RLLWPIKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEM 206 (716)
T ss_pred HHHHHHHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhc
Confidence 99999999998 8999999999999999999999999999999994321
Q ss_pred ------CCC--CCCCCCCCHHHHHHHHHhcCCCCCcchhh
Q 030001 127 ------QEG--RLPDAKQGLWASATRILLLSLVATPWEGA 158 (184)
Q Consensus 127 ------~~g--~lP~p~~~~~~l~~~F~~~gl~~~~~~~~ 158 (184)
|++ .+|.|..++++|++.|..+|||..++|++
T Consensus 207 Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVAL 246 (716)
T TIGR00198 207 GLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVAL 246 (716)
T ss_pred cccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeee
Confidence 233 69999999999999999999988777754
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=3.5e-33 Score=265.87 Aligned_cols=150 Identities=35% Similarity=0.541 Sum_probs=134.6
Q ss_pred HHHHH-HHHHHHHHHHHHHhcC---------CcHHHHHHHHhhhccccccCCCCCCCC-eeEeccccccCcCCCchHHHH
Q 030001 10 EDYKK-AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAV 78 (184)
Q Consensus 10 ~~y~~-~v~~v~~~l~~~l~~~---------~~a~~~LRLaFHDc~t~d~~~~~gGcD-gSI~l~~E~~~~~N~gL~~~~ 78 (184)
++|++ +++++|++|.++|+++ +|+|.+|||+||+++|||..+++|||+ |+|||.+|++|++|.||++++
T Consensus 49 ~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~pe~~w~~N~gL~ka~ 128 (726)
T PRK15061 49 EEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNVNLDKAR 128 (726)
T ss_pred HHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcccccchhhhhHHHHH
Confidence 44555 8899999999998864 799999999999999999999999997 799999999999999999999
Q ss_pred HHHHHHHHhCC-CCChHHHHHHHHHHHHHhhCCCccccCCCCCCCCCCCC------------------------------
Q 030001 79 RLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ------------------------------ 127 (184)
Q Consensus 79 ~~i~~iK~~~p-~VS~ADlialAa~~AV~~~GGP~i~v~~GR~D~~~s~~------------------------------ 127 (184)
++|++||++|| .||+||||+|||++|||.||||.|+|.+||.|...+..
T Consensus 129 ~~L~pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~ 208 (726)
T PRK15061 129 RLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAV 208 (726)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhh
Confidence 99999999997 89999999999999999999999999999999864311
Q ss_pred ---------CCC--CCCCCCCHHHHHHHHHhcCCCCCcchhhh
Q 030001 128 ---------EGR--LPDAKQGLWASATRILLLSLVATPWEGAT 159 (184)
Q Consensus 128 ---------~g~--lP~p~~~~~~l~~~F~~~gl~~~~~~~~~ 159 (184)
+|. +|+|..++.+|++.|..+|||.+++|+++
T Consensus 209 ~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALi 251 (726)
T PRK15061 209 QMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALI 251 (726)
T ss_pred hccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeec
Confidence 111 79999999999999999999777776653
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.98 E-value=6.9e-32 Score=236.12 Aligned_cols=165 Identities=28% Similarity=0.391 Sum_probs=135.8
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhhhccccccCCCCCCCCee-EeccccccCcCCCc--hHHHHH
Q 030001 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNG--LDIAVR 79 (184)
Q Consensus 3 ~~~~~~~~~y~~~v~~v~~~l~~~l~~~~~a~~~LRLaFHDc~t~d~~~~~gGcDgS-I~l~~E~~~~~N~g--L~~~~~ 79 (184)
.+|+.+++ ++|+.+|++| +..+.+++.+|||+||+++||+..+++||+||+ |+|.+|++|+.|.+ |.+++.
T Consensus 6 ~~~~~i~~---~di~~lk~~i---~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~pe~~w~~N~~~~L~~~~~ 79 (297)
T cd08200 6 VDYELIDD---ADIAALKAKI---LASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAPQKDWEVNEPEELAKVLA 79 (297)
T ss_pred CCccccCH---HHHHHHHHHH---HhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCccccCcCccCcHHHHHHHH
Confidence 35666666 7888888877 667789999999999999999999999999996 99999999999999 999999
Q ss_pred HHHHHHHhCC-------CCChHHHHHHHHHHHHHhhCC-----CccccCCCCCCCCCCC--CC---CCCCCCC-------
Q 030001 80 LLEPFKEQFP-------TISYADLYQLAGVVGVEVTGG-----PDIPFHPGRDDKAEPP--QE---GRLPDAK------- 135 (184)
Q Consensus 80 ~i~~iK~~~p-------~VS~ADlialAa~~AV~~~GG-----P~i~v~~GR~D~~~s~--~~---g~lP~p~------- 135 (184)
+|++||++|| .||+||+|+|||.+|||.+|| |.|+|.+||.|++.+. ++ .+.|.+.
T Consensus 80 ~Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~ 159 (297)
T cd08200 80 VLEGIQKEFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLK 159 (297)
T ss_pred HHHHHHHHhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccc
Confidence 9999999997 799999999999999999999 9999999999998752 22 1344332
Q ss_pred -----CCHHHHHHHHHhcCCCCCcchhhh--hc----ccCccccCCccc
Q 030001 136 -----QGLWASATRILLLSLVATPWEGAT--RR----GLDLRDHGPATL 173 (184)
Q Consensus 136 -----~~~~~l~~~F~~~gl~~~~~~~~~--~~----~~~~~~~~~~~~ 173 (184)
.+.++|++.|..+||+..++++++ .+ --+-|.|||-|.
T Consensus 160 ~~~~~~~~~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s~~G~wT~ 208 (297)
T cd08200 160 KGYRVPPEEMLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSKHGVFTD 208 (297)
T ss_pred cCCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCCCCCCCCcC
Confidence 245899999999999887766332 11 123466777554
No 15
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.95 E-value=1.2e-27 Score=228.07 Aligned_cols=166 Identities=28% Similarity=0.382 Sum_probs=136.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhhhccccccCCCCCCCCee-EeccccccCcCCC--chHHHHHH
Q 030001 4 NYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANN--GLDIAVRL 80 (184)
Q Consensus 4 ~~~~~~~~y~~~v~~v~~~l~~~l~~~~~a~~~LRLaFHDc~t~d~~~~~gGcDgS-I~l~~E~~~~~N~--gL~~~~~~ 80 (184)
+|+.+++ ++|..+|.+| +..+-..+.|||++||+++|||.++++||+||+ |||.+|++|+.|. +|.+++++
T Consensus 432 ~~~~~~~---~di~~lk~~i---~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~Pq~~w~~N~p~~L~~vl~~ 505 (726)
T PRK15061 432 DHELIDD---ADIAALKAKI---LASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNEPAQLAKVLAV 505 (726)
T ss_pred CcccCCH---HHHHHHHHHH---HhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecccccCccccCHHHHHHHHHH
Confidence 5666666 6888888777 667778999999999999999999999999996 9999999999999 99999999
Q ss_pred HHHHHHhC-------CCCChHHHHHHHHHHHHHhh---CC--CccccCCCCCCCCCC--CCCC---CCCCCC--------
Q 030001 81 LEPFKEQF-------PTISYADLYQLAGVVGVEVT---GG--PDIPFHPGRDDKAEP--PQEG---RLPDAK-------- 135 (184)
Q Consensus 81 i~~iK~~~-------p~VS~ADlialAa~~AV~~~---GG--P~i~v~~GR~D~~~s--~~~g---~lP~p~-------- 135 (184)
|++||++| |.||+||||+|||.+|||.+ || |.|+|.+||.|++.. ++++ +.|...
T Consensus 506 LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~ 585 (726)
T PRK15061 506 LEGIQAEFNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKK 585 (726)
T ss_pred HHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccc
Confidence 99999998 68999999999999999998 57 999999999999875 3332 567543
Q ss_pred ----CCHHHHHHHHHhcCCCCCcchhhh--hccc----CccccCCccccc
Q 030001 136 ----QGLWASATRILLLSLVATPWEGAT--RRGL----DLRDHGPATLSF 175 (184)
Q Consensus 136 ----~~~~~l~~~F~~~gl~~~~~~~~~--~~~~----~~~~~~~~~~~~ 175 (184)
...++|+++|..+||+..++++++ .+.+ +-|.|||-|..-
T Consensus 586 ~~~~~~e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~~G~~T~~p 635 (726)
T PRK15061 586 GYSVSPEELLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSKHGVFTDRP 635 (726)
T ss_pred cCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCCCCCCCCcCCC
Confidence 235899999999999876666322 1112 336778766543
No 16
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.95 E-value=2.1e-27 Score=226.97 Aligned_cols=149 Identities=29% Similarity=0.370 Sum_probs=123.0
Q ss_pred HhcCCcHHHHHHHHhhhccccccCCCCCCCCee-EeccccccCcCC--CchHHHHHHHHHHHHhCC--CCChHHHHHHHH
Q 030001 27 IAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQFP--TISYADLYQLAG 101 (184)
Q Consensus 27 l~~~~~a~~~LRLaFHDc~t~d~~~~~gGcDgS-I~l~~E~~~~~N--~gL~~~~~~i~~iK~~~p--~VS~ADlialAa 101 (184)
+.++.+.+.+||++||+|+|||.++++||+||+ |||.+|++|+.| .||.+++.+|++||++|| .||+||||+|||
T Consensus 442 ~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~pe~~w~~N~p~gL~~vl~~Le~Ik~~f~~~~vS~ADLivLaG 521 (716)
T TIGR00198 442 LASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEPQKNWPVNEPTRLAKVLAVLEKIQAEFAKGPVSLADLIVLGG 521 (716)
T ss_pred HhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecchhcCcccCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 677889999999999999999999999999995 999999999999 899999999999999999 899999999999
Q ss_pred HHHHHhh---CCC--ccccCCCCCCCCCC--CCCCCCCC---------------CCCCHHHHHHHHHhcCCCCCcchhhh
Q 030001 102 VVGVEVT---GGP--DIPFHPGRDDKAEP--PQEGRLPD---------------AKQGLWASATRILLLSLVATPWEGAT 159 (184)
Q Consensus 102 ~~AV~~~---GGP--~i~v~~GR~D~~~s--~~~g~lP~---------------p~~~~~~l~~~F~~~gl~~~~~~~~~ 159 (184)
.+|||.+ ||| .|+|.+||.|++.. +++++.|. ...+.++|+++|..+||+..++++++
T Consensus 522 ~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a~~lglt~~EmvaL~ 601 (716)
T TIGR00198 522 GAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEELLLDKAQLLTLTAPEMTVLI 601 (716)
T ss_pred HHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHHHHHHHHHhCCCChHHHHhee
Confidence 9999998 897 68999999999875 34444331 23346789999999999876665322
Q ss_pred h--ccc----CccccCCccccc
Q 030001 160 R--RGL----DLRDHGPATLSF 175 (184)
Q Consensus 160 ~--~~~----~~~~~~~~~~~~ 175 (184)
= +.+ +-|.|||-|..-
T Consensus 602 Gg~r~lG~~~~~s~~G~~T~~p 623 (716)
T TIGR00198 602 GGMRVLGANHGGSKHGVFTDRV 623 (716)
T ss_pred cchhhccccCCCCCCCCCcCCC
Confidence 1 111 235677765543
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.6e-25 Score=206.20 Aligned_cols=149 Identities=34% Similarity=0.534 Sum_probs=133.0
Q ss_pred HHHHH-HHHHHHHHHHHHHhcC---------CcHHHHHHHHhhhccccccCCCCCCCC-eeEeccccccCcCCCchHHHH
Q 030001 10 EDYKK-AVEKCKRKLRGFIAEK---------NCAPLMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAV 78 (184)
Q Consensus 10 ~~y~~-~v~~v~~~l~~~l~~~---------~~a~~~LRLaFHDc~t~d~~~~~gGcD-gSI~l~~E~~~~~N~gL~~~~ 78 (184)
|+|++ ++.+++++|..+++++ +++|.+|||+||-++||+..+++||+. |..||.++.+||.|.+|++++
T Consensus 62 eefk~lD~~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaPlnSWPDN~nLDKar 141 (730)
T COG0376 62 EEFKSLDLAAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAPLNSWPDNANLDKAR 141 (730)
T ss_pred HHhhhccHHHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecccccCCCcccchHHHH
Confidence 45555 7888999999998764 689999999999999999999999997 699999999999999999999
Q ss_pred HHHHHHHHhCC-CCChHHHHHHHHHHHHHhhCCCccccCCCCCCCCCCCC------------------------------
Q 030001 79 RLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ------------------------------ 127 (184)
Q Consensus 79 ~~i~~iK~~~p-~VS~ADlialAa~~AV~~~GGP~i~v~~GR~D~~~s~~------------------------------ 127 (184)
.+|++||++|+ .|||||||.|+|++|+|.+|++.+.|..||.|...++.
T Consensus 142 RLLWPIKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaavq 221 (730)
T COG0376 142 RLLWPIKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQ 221 (730)
T ss_pred HHhhhHhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhhe
Confidence 99999999998 99999999999999999999999999999999876532
Q ss_pred --------C--CCCCCCCCCHHHHHHHHHhcCCCCCcchhhhh
Q 030001 128 --------E--GRLPDAKQGLWASATRILLLSLVATPWEGATR 160 (184)
Q Consensus 128 --------~--g~lP~p~~~~~~l~~~F~~~gl~~~~~~~~~~ 160 (184)
+ +..|+|..+..+|+..|+.+++|. .+.|++
T Consensus 222 MGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMND--eETVAL 262 (730)
T COG0376 222 MGLIYVNPEGPNGNPDPLAAARDIRETFARMAMND--EETVAL 262 (730)
T ss_pred eeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCc--Hhhhhh
Confidence 2 248999999999999999999954 555544
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.46 E-value=2.4e-13 Score=127.19 Aligned_cols=139 Identities=29% Similarity=0.431 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHhhhccccccCCCCCCCCe-eEeccccccCcCCC--chHHHHHHHHHHHHhCC-C
Q 030001 15 AVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAEQAHSANN--GLDIAVRLLEPFKEQFP-T 90 (184)
Q Consensus 15 ~v~~v~~~l~~~l~~~~~a~~~LRLaFHDc~t~d~~~~~gGcDg-SI~l~~E~~~~~N~--gL~~~~~~i~~iK~~~p-~ 90 (184)
+|..+|.+| +.++-....++-.+|..+.||+.+++.||+|| .|+|.|.++|+.|. .|.+.+..++.|.+.+. .
T Consensus 450 di~~lK~~I---lasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaPqkdWevN~P~~l~kvl~~le~iq~~fnkk 526 (730)
T COG0376 450 DIAALKAKI---LASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAPQKDWEVNQPAELAKVLAVLEKIQKEFNKK 526 (730)
T ss_pred HHHHHHHHH---HHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecccccCCCCCHHHHHHHHHHHHHHHHHhcCc
Confidence 555566555 67777889999999999999999999999997 89999999999995 57889999999999997 7
Q ss_pred CChHHHHHHHHHHHHHhh---CC--CccccCCCCCCCCCC--C----------CCCC-----CCCCCCCHHHHHHHHHhc
Q 030001 91 ISYADLYQLAGVVGVEVT---GG--PDIPFHPGRDDKAEP--P----------QEGR-----LPDAKQGLWASATRILLL 148 (184)
Q Consensus 91 VS~ADlialAa~~AV~~~---GG--P~i~v~~GR~D~~~s--~----------~~g~-----lP~p~~~~~~l~~~F~~~ 148 (184)
||.||+|+|+|..|||.+ +| -.+||.+||.|+... + ++|. -......-+-|+++-+++
T Consensus 527 vSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL 606 (730)
T COG0376 527 VSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQLL 606 (730)
T ss_pred cchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHHHHh
Confidence 999999999999999974 34 457899999999764 1 1121 123333456788999999
Q ss_pred CCCCCcch
Q 030001 149 SLVATPWE 156 (184)
Q Consensus 149 gl~~~~~~ 156 (184)
+|++-.+.
T Consensus 607 ~Ltapemt 614 (730)
T COG0376 607 TLTAPEMT 614 (730)
T ss_pred ccCCccce
Confidence 99885543
No 19
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=38.17 E-value=8.2 Score=32.69 Aligned_cols=83 Identities=11% Similarity=0.037 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHH--hhCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCc
Q 030001 77 AVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGLWASATRILLLSLVATP 154 (184)
Q Consensus 77 ~~~~i~~iK~~~p~VS~ADlialAa~~AV~--~~GGP~i~v~~GR~D~~~s~~~g~lP~p~~~~~~l~~~F~~~gl~~~~ 154 (184)
++..++.++++ .|.+--...+....|+. .+|--.+..++||.|...- ++-.-+.++...+...|+...-
T Consensus 90 Gl~A~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~-------dg~~~v~~~~~~~~~~~~~tkI 160 (213)
T TIGR00875 90 GLKAVKILKKE--GIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDDIGG-------DGMKLIEEVKTIFENHAPDTEV 160 (213)
T ss_pred HHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEeecchHHHcCC-------CHHHHHHHHHHHHHHcCCCCEE
Confidence 45666666554 23222222333333322 3466678999999887431 2344577888999999999888
Q ss_pred chhhhhcccCcccc
Q 030001 155 WEGATRRGLDLRDH 168 (184)
Q Consensus 155 ~~~~~~~~~~~~~~ 168 (184)
+.++.++..|..+.
T Consensus 161 laAS~r~~~~v~~~ 174 (213)
T TIGR00875 161 IAASVRHPRHVLEA 174 (213)
T ss_pred EEeccCCHHHHHHH
Confidence 88888888877653
No 20
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=34.29 E-value=1.4e+02 Score=20.19 Aligned_cols=37 Identities=16% Similarity=0.058 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHhC----C-CCChHHHHHHHHHHHHHhhCC
Q 030001 74 LDIAVRLLEPFKEQF----P-TISYADLYQLAGVVGVEVTGG 110 (184)
Q Consensus 74 L~~~~~~i~~iK~~~----p-~VS~ADlialAa~~AV~~~GG 110 (184)
+.+.++.+++.-..- . .+|+||+..+....-+...+.
T Consensus 33 ~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~ 74 (95)
T PF00043_consen 33 VPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGP 74 (95)
T ss_dssp HHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCC
Confidence 445667777665532 2 799999988888776666554
No 21
>PRK01362 putative translaldolase; Provisional
Probab=34.05 E-value=12 Score=31.81 Aligned_cols=83 Identities=8% Similarity=0.045 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHH--hhCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCc
Q 030001 77 AVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGLWASATRILLLSLVATP 154 (184)
Q Consensus 77 ~~~~i~~iK~~~p~VS~ADlialAa~~AV~--~~GGP~i~v~~GR~D~~~s~~~g~lP~p~~~~~~l~~~F~~~gl~~~~ 154 (184)
++..+..++++ .|.+--...+....|+. .+|--.+..++||.|...- ++..-+.++...+...|+...-
T Consensus 90 G~~a~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~-------dg~~~i~~~~~~~~~~~~~tki 160 (214)
T PRK01362 90 GLKAVKALSKE--GIKTNVTLIFSANQALLAAKAGATYVSPFVGRLDDIGT-------DGMELIEDIREIYDNYGFDTEI 160 (214)
T ss_pred HHHHHHHHHHC--CCceEEeeecCHHHHHHHHhcCCcEEEeecchHhhcCC-------CHHHHHHHHHHHHHHcCCCcEE
Confidence 55666666654 23333223333343333 3466678999999987421 2445577888999999998888
Q ss_pred chhhhhcccCcccc
Q 030001 155 WEGATRRGLDLRDH 168 (184)
Q Consensus 155 ~~~~~~~~~~~~~~ 168 (184)
+.++.++..+..+.
T Consensus 161 laAS~r~~~~v~~~ 174 (214)
T PRK01362 161 IAASVRHPMHVLEA 174 (214)
T ss_pred EEeecCCHHHHHHH
Confidence 88888888877653
No 22
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=32.05 E-value=36 Score=31.52 Aligned_cols=88 Identities=11% Similarity=0.011 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHH--hhCCCccccCCCCCCCCCCCCCC--CCCCCCC----CHHHHHHHHHhc
Q 030001 77 AVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEG--RLPDAKQ----GLWASATRILLL 148 (184)
Q Consensus 77 ~~~~i~~iK~~~p~VS~ADlialAa~~AV~--~~GGP~i~v~~GR~D~~~s~~~g--~lP~p~~----~~~~l~~~F~~~ 148 (184)
++..++.+++. .|.|-=.+.|....|+. .+|-..|..++||.|.+.-...| .+|...+ .+.++...|...
T Consensus 143 Gi~A~~~L~~~--GI~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~ 220 (391)
T PRK12309 143 GIKAAEVLEKE--GIHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKF 220 (391)
T ss_pred HHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhc
Confidence 33444444333 34444444455554444 36888999999998875432111 1332222 377888889999
Q ss_pred CCCCCcchhhhhcccCcc
Q 030001 149 SLVATPWEGATRRGLDLR 166 (184)
Q Consensus 149 gl~~~~~~~~~~~~~~~~ 166 (184)
|+...-+.++.++..+..
T Consensus 221 ~~~T~Im~ASfRn~~~v~ 238 (391)
T PRK12309 221 GYKTEVMGASFRNIGEII 238 (391)
T ss_pred CCCcEEEecccCCHHHHH
Confidence 998777777777665543
No 23
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=31.00 E-value=11 Score=27.59 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHhhhccccccCCCCCCCCe
Q 030001 17 EKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG 58 (184)
Q Consensus 17 ~~v~~~l~~~l~~~~~a~~~LRLaFHDc~t~d~~~~~gGcDg 58 (184)
+.+.+.|++++++....+..||+.+ . .|||.|
T Consensus 8 ~~A~~~i~~ll~~~~~~~~~LRi~v--~--------~gGCsG 39 (92)
T TIGR01911 8 DDAYEEFKDFLKENDIDNDVIRIHF--A--------GMGCMG 39 (92)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEE--e--------CCCccC
Confidence 3466677777664333334588876 1 489999
No 24
>PLN02438 inositol-3-phosphate synthase
Probab=28.60 E-value=3.7e+02 Score=26.09 Aligned_cols=112 Identities=16% Similarity=0.107 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHhhhccccccCCCCCCCCeeEecc---cccc----CcCCCchHHHHHHHHHHHH
Q 030001 14 KAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLA---AEQA----HSANNGLDIAVRLLEPFKE 86 (184)
Q Consensus 14 ~~v~~v~~~l~~~l~~~~~a~~~LRLaFHDc~t~d~~~~~gGcDgSI~l~---~E~~----~~~N~gL~~~~~~i~~iK~ 86 (184)
..++.+|++|+++-+. .|+|--|.+. .|.- .+.|..+ -.+++.|++
T Consensus 204 e~ve~ir~DIr~Fk~~------------------------n~ld~vVVlwtAsTEr~~~~~~~~~~t~---~~l~~ai~~ 256 (510)
T PLN02438 204 EQMDQIRKDIREFKEK------------------------NKVDKVVVLWTANTERYSNVVVGLNDTM---ENLLASIEK 256 (510)
T ss_pred HHHHHHHHHHHHHHHH------------------------hCCCeEEEEECCCCCCCCcCCCcccCCH---HHHHHHHhc
Confidence 5677777777776542 5788877764 2432 2344433 356667776
Q ss_pred hCCCCChHHHHHHHHHHHHHhhCCCccccCC--CCCCCCCC-CCCCCCCC--------CCCCHHHHHHHHHhcCCCCCcc
Q 030001 87 QFPTISYADLYQLAGVVGVEVTGGPDIPFHP--GRDDKAEP-PQEGRLPD--------AKQGLWASATRILLLSLVATPW 155 (184)
Q Consensus 87 ~~p~VS~ADlialAa~~AV~~~GGP~i~v~~--GR~D~~~s-~~~g~lP~--------p~~~~~~l~~~F~~~gl~~~~~ 155 (184)
..+.||-+=+.|.|+-. .|-|.+...+ +..-+... ..+..+|- .+.--+.|...|..+||-.+.+
T Consensus 257 ~~~eispS~~YA~AAl~----eG~~fVNgsP~~t~vP~~~elA~~~gvpi~GDD~KSGqT~~ksvLa~~l~~RGlkv~s~ 332 (510)
T PLN02438 257 DEAEISPSTLYALACIL----EGVPFINGSPQNTFVPGVIELAVKKNSLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSI 332 (510)
T ss_pred CCCcCChHHHHHHHHHH----cCCCeEecCCccccChhhHHHHHHcCCCEecccccCCCchhHHHHHHHHHHcCCceeeE
Confidence 66689999999888763 5666665544 42111111 11122442 2223567888999999966554
Q ss_pred h
Q 030001 156 E 156 (184)
Q Consensus 156 ~ 156 (184)
.
T Consensus 333 ~ 333 (510)
T PLN02438 333 V 333 (510)
T ss_pred E
Confidence 4
No 25
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=28.00 E-value=25 Score=30.06 Aligned_cols=94 Identities=7% Similarity=-0.083 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHH--hhCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCc
Q 030001 77 AVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGLWASATRILLLSLVATP 154 (184)
Q Consensus 77 ~~~~i~~iK~~~p~VS~ADlialAa~~AV~--~~GGP~i~v~~GR~D~~~s~~~g~lP~p~~~~~~l~~~F~~~gl~~~~ 154 (184)
++..++.++++- |.+-=...+....|+. .+|--.+..++||.|...-++ ..-+.++...|...++...-
T Consensus 94 Gl~Ai~~L~~~G--i~vn~T~ifs~~Qa~~Aa~aGa~yvsPyvgRi~d~g~D~-------~~~i~~i~~~~~~~~~~tkI 164 (222)
T PRK12656 94 GLAAIKTLKAEG--YHITATAIYTVFQGLLAIEAGADYLAPYYNRMENLNIDS-------NAVIGQLAEAIDRENSDSKI 164 (222)
T ss_pred HHHHHHHHHHCC--CceEEeeeCCHHHHHHHHHCCCCEEecccchhhhcCCCH-------HHHHHHHHHHHHhcCCCCEE
Confidence 566666666541 1111111223332322 378888899999998643221 23577888999999999888
Q ss_pred chhhhhcccCccccCCccccccccc
Q 030001 155 WEGATRRGLDLRDHGPATLSFLTIP 179 (184)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (184)
+.++.++..+..+...+---..|+|
T Consensus 165 LaAS~r~~~~v~~a~~~G~d~vTvp 189 (222)
T PRK12656 165 LAASFKNVAQVNKAFALGAQAVTAG 189 (222)
T ss_pred EEEecCCHHHHHHHHHcCCCEEecC
Confidence 8888888887766443333333433
No 26
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=27.97 E-value=16 Score=31.16 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHH--hhCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhcCCCCC
Q 030001 76 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGLWASATRILLLSLVAT 153 (184)
Q Consensus 76 ~~~~~i~~iK~~~p~VS~ADlialAa~~AV~--~~GGP~i~v~~GR~D~~~s~~~g~lP~p~~~~~~l~~~F~~~gl~~~ 153 (184)
.++..++.++++ .|.+-=...+....|+- .+|.-.+..++||.|...- ++..-+.++...+...|+...
T Consensus 91 ~Gl~Ai~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~g~-------dg~~~i~~~~~~~~~~~~~tk 161 (220)
T PRK12655 91 EGLAAIKKLKKE--GIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQGG-------DGIRMVQELQTLLEMHAPESM 161 (220)
T ss_pred HHHHHHHHHHHC--CCceeEeEecCHHHHHHHHHcCCeEEEeecchHhHcCC-------CHHHHHHHHHHHHHhcCCCcE
Confidence 456677777654 22222222233333322 2577789999999986321 234557788899999999888
Q ss_pred cchhhhhcccCccccCCccccccccc
Q 030001 154 PWEGATRRGLDLRDHGPATLSFLTIP 179 (184)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (184)
-+.++.++..+..+..-+-....|+|
T Consensus 162 ILaAS~r~~~~v~~~~~~G~d~vTip 187 (220)
T PRK12655 162 VLAASFKTPRQALDCLLAGCQSITLP 187 (220)
T ss_pred EEEEecCCHHHHHHHHHcCCCEEECC
Confidence 88888666665543322333334443
No 27
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=27.85 E-value=43 Score=30.14 Aligned_cols=76 Identities=11% Similarity=-0.087 Sum_probs=46.1
Q ss_pred CCChHHHHHHHHHHHHH--hhCCCccccCCCCCCCCCCCCCC--CCCC----CCCCHHHHHHHHHhcCCCCCcchhhhhc
Q 030001 90 TISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEG--RLPD----AKQGLWASATRILLLSLVATPWEGATRR 161 (184)
Q Consensus 90 ~VS~ADlialAa~~AV~--~~GGP~i~v~~GR~D~~~s~~~g--~lP~----p~~~~~~l~~~F~~~gl~~~~~~~~~~~ 161 (184)
.|+|-=.+.|....|+. .+|-..|..++||.|.+.-...+ ..+. +-..+.++...|...|+....+.++.++
T Consensus 148 GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vmaASfRn 227 (313)
T cd00957 148 GIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFRN 227 (313)
T ss_pred CCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEEEecccCC
Confidence 34444444455554444 35888899999998865321111 1111 1234778888899999988777777665
Q ss_pred ccCc
Q 030001 162 GLDL 165 (184)
Q Consensus 162 ~~~~ 165 (184)
..+.
T Consensus 228 ~~~v 231 (313)
T cd00957 228 IGQI 231 (313)
T ss_pred HHHH
Confidence 5544
No 28
>PRK12346 transaldolase A; Provisional
Probab=25.58 E-value=45 Score=30.12 Aligned_cols=76 Identities=9% Similarity=-0.101 Sum_probs=46.8
Q ss_pred CCChHHHHHHHHHHHHH--hhCCCccccCCCCCCCCCCC--C-CCCCCCCCC---CHHHHHHHHHhcCCCCCcchhhhhc
Q 030001 90 TISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPP--Q-EGRLPDAKQ---GLWASATRILLLSLVATPWEGATRR 161 (184)
Q Consensus 90 ~VS~ADlialAa~~AV~--~~GGP~i~v~~GR~D~~~s~--~-~g~lP~p~~---~~~~l~~~F~~~gl~~~~~~~~~~~ 161 (184)
.|+|-=.+.|....|+. .+|-..|..++||.|.+.-. + ...-+.... .+.++...|...|+...-+.++.++
T Consensus 149 GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn 228 (316)
T PRK12346 149 GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRR 228 (316)
T ss_pred CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEecccCC
Confidence 35544444555554444 46888999999998875321 1 111122222 3678888888999987777777666
Q ss_pred ccCc
Q 030001 162 GLDL 165 (184)
Q Consensus 162 ~~~~ 165 (184)
..+.
T Consensus 229 ~~qi 232 (316)
T PRK12346 229 TEQI 232 (316)
T ss_pred HHHH
Confidence 5554
No 29
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=24.85 E-value=20 Score=31.03 Aligned_cols=89 Identities=11% Similarity=-0.107 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHH--hhCCCccccCCCCCCCCCC---CCCCCCCCCCCC---HHHHHHHHHhc
Q 030001 77 AVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEP---PQEGRLPDAKQG---LWASATRILLL 148 (184)
Q Consensus 77 ~~~~i~~iK~~~p~VS~ADlialAa~~AV~--~~GGP~i~v~~GR~D~~~s---~~~g~lP~p~~~---~~~l~~~F~~~ 148 (184)
++..++.+++. .|++-=...+....|+. .+|...+.+++||.|...- ...+.=|....+ +.++...+...
T Consensus 128 Gl~A~~~L~~~--GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~ 205 (252)
T cd00439 128 GIPAIKDLIAA--GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQK 205 (252)
T ss_pred HHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHh
Confidence 44555555443 34444444444444444 3678889999999987653 111110211233 44777888888
Q ss_pred CCCCCcchhhhhcccCccc
Q 030001 149 SLVATPWEGATRRGLDLRD 167 (184)
Q Consensus 149 gl~~~~~~~~~~~~~~~~~ 167 (184)
|....-+.++.++..+...
T Consensus 206 ~~~tkiL~AS~r~~~~v~~ 224 (252)
T cd00439 206 FKKQRVLWASFSDTLYVAP 224 (252)
T ss_pred CCCCeEEEEeeCCHHHHHH
Confidence 9888888888887666533
No 30
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=21.15 E-value=43 Score=32.82 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHH-HhcCCcHHHHHHHHhhhcccccc
Q 030001 15 AVEKCKRKLRGF-IAEKNCAPLMLRIAWHSAGTYDV 49 (184)
Q Consensus 15 ~v~~v~~~l~~~-l~~~~~a~~~LRLaFHDc~t~d~ 49 (184)
++.+||+.|..- ..++.-...=+||.|+.|++|+.
T Consensus 266 DLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp 301 (640)
T KOG1474|consen 266 DLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNP 301 (640)
T ss_pred cHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCC
Confidence 345577777764 44566778889999999999985
No 31
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=21.07 E-value=30 Score=29.47 Aligned_cols=94 Identities=13% Similarity=0.046 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHH--hhCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCc
Q 030001 77 AVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGLWASATRILLLSLVATP 154 (184)
Q Consensus 77 ~~~~i~~iK~~~p~VS~ADlialAa~~AV~--~~GGP~i~v~~GR~D~~~s~~~g~lP~p~~~~~~l~~~F~~~gl~~~~ 154 (184)
++..++.++++ .|.+-=...+....|+. .+|.-.+..++||.|...- ++-..+.++...+...++...-
T Consensus 92 Gl~A~~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~g~-------dg~~~i~~i~~~~~~~~~~tkI 162 (220)
T PRK12653 92 GLAAIKMLKAE--GIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGG-------SGIQTVTDLQQLLKMHAPQAKV 162 (220)
T ss_pred HHHHHHHHHHc--CCCeeEEEecCHHHHHHHHhcCCcEEEeecChHhhcCC-------ChHHHHHHHHHHHHhcCCCcEE
Confidence 55666666654 22222222333333322 3576778999999986322 1223477888888888998888
Q ss_pred chhhhhcccCccccCCccccccccc
Q 030001 155 WEGATRRGLDLRDHGPATLSFLTIP 179 (184)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (184)
+.++.++..|.....-+-..-.|+|
T Consensus 163 LaAS~r~~~~v~~~~~~G~d~vTip 187 (220)
T PRK12653 163 LAASFKTPRQALDCLLAGCESITLP 187 (220)
T ss_pred EEEecCCHHHHHHHHHcCCCEEECC
Confidence 8888777666654333333334443
No 32
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=20.55 E-value=45 Score=27.95 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHH--HhhCCCccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCc
Q 030001 77 AVRLLEPFKEQFPTISYADLYQLAGVVGV--EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGLWASATRILLLSLVATP 154 (184)
Q Consensus 77 ~~~~i~~iK~~~p~VS~ADlialAa~~AV--~~~GGP~i~v~~GR~D~~~s~~~g~lP~p~~~~~~l~~~F~~~gl~~~~ 154 (184)
+++.+..++++ .|.+-=...+....|. ..+|...+..++||.|...- ++..-+.++...+...|+...-
T Consensus 90 gl~ai~~L~~~--gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~~g~-------dg~~~i~~i~~~~~~~~~~tki 160 (211)
T cd00956 90 GLKAIKKLSEE--GIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDDLGG-------DGMELIREIRTIFDNYGFDTKI 160 (211)
T ss_pred HHHHHHHHHHc--CCceeeEEecCHHHHHHHHHcCCCEEEEecChHhhcCC-------CHHHHHHHHHHHHHHcCCCceE
Confidence 45566666554 1222111122233332 23577788899999887432 2335567888899999987777
Q ss_pred chhhhhcccCccccCCccccccccc
Q 030001 155 WEGATRRGLDLRDHGPATLSFLTIP 179 (184)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (184)
+.+..++..+..+..-+-..+.|+|
T Consensus 161 l~As~r~~~ei~~a~~~Gad~vTv~ 185 (211)
T cd00956 161 LAASIRNPQHVIEAALAGADAITLP 185 (211)
T ss_pred EecccCCHHHHHHHHHcCCCEEEeC
Confidence 8888877777765444444444444
Done!