Citrus Sinensis ID: 030002

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MSNMTTLEEESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGSSNWTESPQKSSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSRKRRREKTLDLQESTISII
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHHccccccccEEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccHHccccccccccHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MSNMTTLEEESSILEFIRQFLLgdftslddpnlsflqpmesefpviksepdsptfceiikpeplditclgssnwtespqkssepkladteerkhyrgvrrrpwgkyaaeirdparkgsrvwlgtfdsdvDAAKAYDSAAFRMRGRKAIlnfpleagadsppaknsrkrRREKTLDLQESTISII
Flexible Loop (DISEMBL)
MSNMTTLEEESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGssnwtespqkssepkladteerkhyrgvrrrpwgkyaaeirdparkgsrvwlGTFDSDVDAAKAYDSAAFRMRGRKAILnfpleagadsppaknsrkrrrektldlqestisii
Low Complexity Region (SEG)
MSNMTTLEEESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGSSNWTESPQKSSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSRKRRREKTLDLQESTISII
Disordered region (IsUnstruct)
************ILEFIRQFLLGDFTSLDDPNLSFL*****************TFCEIIKPEPLDITCLG******************************RPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP********************************
Disordered Region (DISOPRED)
*********ESSILEFIRQFLLGDFTSLDDPNLS***************************************************************VRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPL*******************************
Disordered Region (DISEMBL)
**********SSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGSS**************************RRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGA*******************QESTISII
Disordered Region (DISPRO)
***********SILEFIRQFLLGDFTSL***************************************************************RKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGAD**************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNMTTLEEESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGSSNWTESPQKSSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSRKRRREKTLDLQESTISII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q9LY05	207	Ethylene-responsive trans	yes	no	0.875	0.777	0.472	3e-33
O80341	300	Ethylene-responsive trans	no	no	0.608	0.373	0.539	3e-31
Q9FKG2	201	Ethylene-responsive trans	no	no	0.880	0.805	0.483	3e-29
Q8VY90	221	Ethylene-responsive trans	no	no	0.755	0.628	0.435	5e-28
Q40478	291	Ethylene-responsive trans	N/A	no	0.440	0.278	0.659	1e-27
Q8VZ91	282	Ethylene-responsive trans	no	no	0.592	0.386	0.512	1e-27
Q9LW48	282	Ethylene-responsive trans	N/A	no	0.440	0.287	0.629	2e-27
Q9FKG1	241	Ethylene-responsive trans	no	no	0.733	0.560	0.436	2e-26
O80338	243	Ethylene-responsive trans	no	no	0.576	0.436	0.473	1e-24
Q40476	236	Ethylene-responsive trans	N/A	no	0.418	0.326	0.653	1e-24

>sp|Q9LY05|EF106_ARATH Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1

 Score =  141 bits (355), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 113/182 (62%), Gaps = 21/182 (11%)

Query: 9   EESSILEFIRQFLLGDFTSLD------DPNLSFLQPMESEFPVI-KSEPDSPTF------ 55
           EESS LE I+  LL D    D      D + SF+  +    P + K EPDSP        
Sbjct: 5   EESSDLEAIQSHLLEDLLVCDGFMGDFDFDASFVSGLWCIEPHVPKQEPDSPVLDPDSFV 64

Query: 56  CEIIKPE-------PLDITCLGSSNWTESPQKSSEPKLADTEERKHYRGVRRRPWGKYAA 108
            E ++ E         ++    S+  T+   K +E +  +  + +HYRGVRRRPWGK+AA
Sbjct: 65  NEFLQVEGESSSSSSPELNSSSSTYETDQSVKKAE-RFEEEVDARHYRGVRRRPWGKFAA 123

Query: 109 EIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSRKR 168
           EIRDPA+KGSR+WLGTF+SDVDAA+AYD AAF++RGRKA+LNFPL+AG    PA + RKR
Sbjct: 124 EIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPANSGRKR 183

Query: 169 RR 170
           +R
Sbjct: 184 KR 185

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|O80341|EF102_ARATH Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1

 Score =  134 bits (337), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/115 (53%), Positives = 84/115 (73%), Gaps = 3/115 (2%)

Query: 59  IKPEPLDITCLGSSNWTESPQKSSEPKL---ADTEERKHYRGVRRRPWGKYAAEIRDPAR 115
           I+  PL I+    + W +   ++++P++      EE+KHYRGVR+RPWGK+AAEIRDP +
Sbjct: 117 IRKPPLKISLPAKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNK 176

Query: 116 KGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSRKRRR 170
           +GSRVWLGTFD+ ++AA+AYD AAFR+RG KAILNFPLE G   P A    K+R+
Sbjct: 177 RGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKWKPRADEGEKKRK 231

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKG2|EF107_ARATH Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1

 Score =  127 bits (320), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 110/178 (61%), Gaps = 16/178 (8%)

Query: 9   EESSILEFIRQFL----------LGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTF--- 55
           EESS L+ I++ L          + DF   D   +S L  +E   PV K EP SP     
Sbjct: 5   EESSDLDVIQKHLFEDLMIPDGFIEDFVFDDTAFVSGLWSLEPFNPVPKLEPSSPVLDPD 64

Query: 56  ---CEIIKPEPLDITCLGSSNWTESPQKSSEPKLADTEERKHYRGVRRRPWGKYAAEIRD 112
               EI++ E    +   ++   E    S+  K    EE +HYRGVRRRPWGK+AAEIRD
Sbjct: 65  SYVQEILQMEAESSSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRD 124

Query: 113 PARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSRKRRR 170
           PA+KGSR+WLGTF+SD+DAA+AYD AAF++RGRKA+LNFPL+AG    P  + RKRRR
Sbjct: 125 PAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKYDAPVNSCRKRRR 182

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY90|EF105_ARATH Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1

 Score =  124 bits (310), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 92/170 (54%), Gaps = 31/170 (18%)

Query: 12  SILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGS 71
           S L+ I Q LL DF SLD    +      S     K     P    I  P          
Sbjct: 14  SALDLITQHLLTDFPSLDTFASTIHHCTTSTLSQRK-----PPLATIAVP---------- 58

Query: 72  SNWTESPQKSSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDA 131
                    ++ P + + ++R HYRGVRRRPWGKYAAEIRDP +KG RVWLGTFD+ ++A
Sbjct: 59  ---------TTAPVVQENDQR-HYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEA 108

Query: 132 AKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSR------KRRREKTLD 175
           A+ YD AAF++RG KAILNFPLEAG       N +      KR+R+ T D
Sbjct: 109 ARGYDKAAFKLRGSKAILNFPLEAGKHEDLGDNKKTISLKAKRKRQVTED 158

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40478|ERF5_TOBAC Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 70/88 (79%), Gaps = 7/88 (7%)

Query: 91  ERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILN 150
           E+KHYRGVR+RPWGK+AAEIRDP RKG+RVWLGTFD+ ++AAKAYD AAF++RG KAI+N
Sbjct: 141 EKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVN 200

Query: 151 FPLEAG----ADS---PPAKNSRKRRRE 171
           FPLE       D+    PA + RKR RE
Sbjct: 201 FPLEVANFKQQDNEILQPANSGRKRMRE 228

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q8VZ91|EF103_ARATH Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2

 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/117 (51%), Positives = 81/117 (69%), Gaps = 8/117 (6%)

Query: 63  PLDITCLGSSNWTESPQKSSEPKL----ADTEERKHYRGVRRRPWGKYAAEIRDPARKGS 118
           PL I     + W +    + +P+L       EE++HYRGVR RPWGK+AAEIRDP R+G+
Sbjct: 101 PLKIAPPNRTKWIQFATGNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRRGT 160

Query: 119 RVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSR----KRRRE 171
           RVWLGTF++ ++AA+AYD  AFR+RG KAILNFPLE    +P A++ R    KR+R+
Sbjct: 161 RVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDKWNPRAEDGRGLYNKRKRD 217

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW48|ERF5_NICSY Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 68/89 (76%), Gaps = 8/89 (8%)

Query: 91  ERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILN 150
           E+KHYRGVR+RPWGK+AAEIRDP RKG+RVWLGTFD+ ++AAKAYD AA+++RG KAI+N
Sbjct: 134 EKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVN 193

Query: 151 FPLEAGADS--------PPAKNSRKRRRE 171
           FPLE             P   +SRKR RE
Sbjct: 194 FPLEVANFKQEFNNEIRPLVNSSRKRVRE 222

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q9FKG1|EF104_ARATH Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1

 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 92/158 (58%), Gaps = 23/158 (14%)

Query: 8   EEESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDIT 67
           ++E+  ++FI Q LL DF S++  + S        F    SE   P       P+P    
Sbjct: 4   KQEALAIDFISQHLLTDFVSMETDHPSLFTNQLHNF---HSE-TGPRTITNQSPKP---- 55

Query: 68  CLGSSNWTESPQKSSEPKLADTE----------ERKHYRGVRRRPWGKYAAEIRDPARKG 117
                N T + +K   P L+ +           E +HYRGVRRRPWGKYAAEIRDP +KG
Sbjct: 56  -----NSTLNQRKPPLPNLSVSRTVSTKTEKEEEERHYRGVRRRPWGKYAAEIRDPNKKG 110

Query: 118 SRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEA 155
            R+WLGT+D+ V+A +AYD AAF++RGRKAILNFPL+ 
Sbjct: 111 CRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDV 148

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 80/131 (61%), Gaps = 25/131 (19%)

Query: 42  EFPVIKSEPDSPTFCEIIKPEPLDITCLGSSNWT---ESPQKSSEPKLADTEERKHYRGV 98
           +FP +K EP                    + N+T   E P+K+  P      + KHYRGV
Sbjct: 82  DFPAVKVEP--------------------TENFTAMEEKPKKAI-PVTETAVKAKHYRGV 120

Query: 99  RRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGAD 158
           R+RPWGK+AAEIRDPA+ G+RVWLGTF++  DAA AYD AAFRMRG +A+LNFPL   + 
Sbjct: 121 RQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSG 180

Query: 159 SP-PAKNSRKR 168
            P P + + KR
Sbjct: 181 EPDPVRITSKR 191

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40476|ERF1_TOBAC Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 63/78 (80%), Gaps = 1/78 (1%)

Query: 93  KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 152
           +HYRGVRRRPWGK+AAEIRDPA+ G+RVWLGT+++D +AA AYD AA+RMRG KA LNFP
Sbjct: 103 RHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFP 162

Query: 153 LEAGADSP-PAKNSRKRR 169
              G + P P + + KRR
Sbjct: 163 HRIGLNEPEPVRVTAKRR 180

Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
255539893	232	DNA binding protein, putative [Ricinus c	0.918	0.728	0.531	5e-42
224112805	234	AP2/ERF domain-containing transcription	0.913	0.717	0.517	2e-41
37730469	198	ethylene-responsive element binding fact	0.798	0.742	0.554	4e-41
341833964	233	ERFAP2-like protein [Pyrus x bretschneid	0.913	0.721	0.5	2e-39
292668971	233	AP2 domain class transcription factor [M	0.885	0.699	0.505	5e-39
381356174	224	ethylenr reponse factor ERF3 [Eriobotrya	0.869	0.714	0.502	2e-38
310892564	185	ethylene-responsive-element-binding fact	0.934	0.929	0.486	2e-38
292668915	245	AP2 domain class transcription factor [M	0.907	0.681	0.458	2e-37
224057954	237	AP2/ERF domain-containing transcription	0.907	0.704	0.510	7e-37
351727921	199	uncharacterized protein LOC100306125 [Gl	0.880	0.814	0.486	1e-36

>gi|255539893|ref|XP_002511011.1| DNA binding protein, putative [Ricinus communis] gi|223550126|gb|EEF51613.1| DNA binding protein, putative [Ricinus communis]

 Score =  176 bits (445), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 102/192 (53%), Positives = 117/192 (60%), Gaps = 23/192 (11%)

Query: 9   EESSILEFIRQFLLGDFTSLD-----------DPNLSFLQPMESEFPVIKSEPDSPTF-- 55
           +ESS+LE I Q+LLGDF S D            PNL  ++      P    EP SP    
Sbjct: 5   QESSVLELISQYLLGDFPSADIFFCNLDSTLAHPNLRPVKLESDNCPASSPEPKSPVSDL 64

Query: 56  --------CEIIKPEPLDITCLGSSNWT-ESPQKSSEPKLADTEERKHYRGVRRRPWGKY 106
                    E+++P P     L S     +SP   S  +  D EE++HYRGVRRRPWGK+
Sbjct: 65  IQYAHDAKPEVVEPTPPQPLGLASRPINRQSPPPDSNAR-DDEEEKRHYRGVRRRPWGKF 123

Query: 107 AAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSR 166
           AAEIRDP RKGSRVWLGTFD DVDAAKAYD AAFRMRGRKAILNFPLEAG   PP    R
Sbjct: 124 AAEIRDPNRKGSRVWLGTFDRDVDAAKAYDCAAFRMRGRKAILNFPLEAGLADPPKNTGR 183

Query: 167 KRRREKTLDLQE 178
           KRRR K  D++E
Sbjct: 184 KRRRVKRADVEE 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112805|ref|XP_002332695.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222832949|gb|EEE71426.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/201 (51%), Positives = 121/201 (60%), Gaps = 33/201 (16%)

Query: 9   EESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIK---------SEPDSP------ 53
           EESS LE IRQ LLGDF S D+    F+  +ES    +          SEP+SP      
Sbjct: 5   EESSTLELIRQHLLGDFISTDE----FISNLESSIASVSVKLESSLSGSEPNSPISDQSY 60

Query: 54  -----TFCEIIKPEPLDIT-----CLGSSNWTESPQKSSEPKLADTEER-KHYRGVRRRP 102
                T+   IKPE +D T       GSSN    P+     K+ D  E  +HYRGVRRRP
Sbjct: 61  HSTPETYSFEIKPEIIDFTPPEPVFSGSSNQYPPPEPV---KMTDKGETVRHYRGVRRRP 117

Query: 103 WGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPA 162
           WGK+AAEIRDP RKGSRVWLGTFDSD DAAKAYD AAF+MRGRKAILNFP EAG   PP 
Sbjct: 118 WGKFAAEIRDPTRKGSRVWLGTFDSDTDAAKAYDCAAFKMRGRKAILNFPSEAGLSIPPP 177

Query: 163 KNSRKRRREKTLDLQESTISI 183
              RKRRR K  ++   ++ +
Sbjct: 178 ATGRKRRRSKGEEVLPESVDV 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37730469|gb|AAO59439.1| ethylene-responsive element binding factor [Gossypium hirsutum]

 Score =  172 bits (437), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 101/182 (55%), Positives = 118/182 (64%), Gaps = 35/182 (19%)

Query: 9   EESSILEFIRQFLLGDFTSLD------DPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPE 62
           EES+ LEFIRQ LLGDF ++D      D  LS LQP   + P I        F   ++P 
Sbjct: 6   EESTTLEFIRQHLLGDFATVDAFINTLDFGLSHLQPQSHQLPEI--------FTHGVEPA 57

Query: 63  PLDITCLGSSNWTESPQKSSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWL 122
           P+                + EP     EE++HYRGVRRRPWGK+AAEIRDP RKG RVWL
Sbjct: 58  PI----------------TKEPF---CEEKRHYRGVRRRPWGKFAAEIRDPNRKGIRVWL 98

Query: 123 GTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADS-PPAKNS-RKRRREKTLDLQEST 180
           GT+DSDVDAAKAYD AAF+MRG+KAILNFPLEAG  S PPA  + RKRRREK + L ES 
Sbjct: 99  GTYDSDVDAAKAYDCAAFKMRGQKAILNFPLEAGEGSQPPAVTTGRKRRREKRVWLPESD 158

Query: 181 IS 182
           I+
Sbjct: 159 IT 160

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341833964|gb|AEK94317.1| ERFAP2-like protein [Pyrus x bretschneideri]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/196 (50%), Positives = 121/196 (61%), Gaps = 28/196 (14%)

Query: 3   NMTTLEEES-SILEFIRQFLLGDFTSLDD--PNLSF-LQPMESEF----------PVIKS 48
           NM   EE+  S LE IRQ+LLGDFT  D    +L+F  QP++ E+          P+   
Sbjct: 12  NMPAHEEQDDSTLELIRQYLLGDFTFTDSFISHLNFQFQPVKPEYSSLSESGPSSPISNP 71

Query: 49  EPDSPTFC------EII-----KPEPLDITCLGSSNWTE---SPQKSSEPKLADTEERKH 94
              SP F       EI+     + EPL+++     N T     P+   +      +  +H
Sbjct: 72  NHHSPHFSTSETKPEIVNLPSMEAEPLNLSSPKRKNSTSQNPGPKDELQQVSGPGDALRH 131

Query: 95  YRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE 154
           YRGVRRRPWGK+AAEIRDPARKG+RVWLGTFD+DVDAAKAYD AAF++RGRKAILNFPLE
Sbjct: 132 YRGVRRRPWGKFAAEIRDPARKGTRVWLGTFDTDVDAAKAYDCAAFKLRGRKAILNFPLE 191

Query: 155 AGADSPPAKNSRKRRR 170
           AG   PP   +RKRRR
Sbjct: 192 AGVSEPPVNTARKRRR 207

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668971|gb|ADE41140.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  166 bits (419), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 96/190 (50%), Positives = 116/190 (61%), Gaps = 27/190 (14%)

Query: 8   EEESSILEFIRQFLLGDFTSLDD--PNLSF-LQPMESEF----------PVIKSEPDSPT 54
           E++ S LE IRQ LLGDFT  D    +L+F  QP++ E+          P+      SP 
Sbjct: 18  EQDDSTLELIRQHLLGDFTFTDSFISHLNFQFQPVKPEYSSLSESGPSSPISNPNHHSPQ 77

Query: 55  FCEI-IKP----------EPLDITCLGSSNWTE---SPQKSSEPKLADTEERKHYRGVRR 100
           F     KP          EPL+++     N T     P+   +      +  +HYRGVRR
Sbjct: 78  FSNSETKPKIVNLPSMEVEPLNLSSPKRKNSTSQNPGPKDELQQVSGPGDALRHYRGVRR 137

Query: 101 RPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSP 160
           RPWGKYAAEIRDPARKG+RVWLGTFD+DVDAAKAYD AAF++RGRKAILNFPLEAG   P
Sbjct: 138 RPWGKYAAEIRDPARKGTRVWLGTFDTDVDAAKAYDCAAFKLRGRKAILNFPLEAGVSEP 197

Query: 161 PAKNSRKRRR 170
           P   +RKRRR
Sbjct: 198 PVNTARKRRR 207

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381356174|gb|AFG26328.1| ethylenr reponse factor ERF3 [Eriobotrya japonica]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/193 (50%), Positives = 119/193 (61%), Gaps = 33/193 (17%)

Query: 4   MTTLEEES-SILEFIRQFLLGDFTSLDDPNLSFL--------------QPMESEFPVIKS 48
           M+T EE+  S LE IRQ LL DFT   D  +S+L              QP++ E+   ++
Sbjct: 13  MSTHEEQDDSTLELIRQHLLEDFT-FTDSIISYLNFQITPDDISYFEFQPVKPEYSYSET 71

Query: 49  EPDSPTFCEIIKPEPLDI-----------TCLGSSNWTESPQKSSEPKLADTEERKHYRG 97
           +P+      + + EPL++           TC  SS+  E  Q S    +      KHYRG
Sbjct: 72  KPERVNLPSM-EVEPLNLSSQCSPKRKNSTCQTSSSKDELQQVSGSGDVL-----KHYRG 125

Query: 98  VRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGA 157
           VRRRPWGKYAAEIRDP RKG+RVWLGTFD+DVDAAKAYD AAF++RGRKAILNFPLEAG 
Sbjct: 126 VRRRPWGKYAAEIRDPVRKGTRVWLGTFDTDVDAAKAYDCAAFKLRGRKAILNFPLEAGL 185

Query: 158 DSPPAKNSRKRRR 170
             PP   +RKRRR
Sbjct: 186 SKPPVNTARKRRR 198

Source: Eriobotrya japonica

Species: Eriobotrya japonica

Genus: Eriobotrya

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310892564|gb|ADP37424.1| ethylene-responsive-element-binding factor 9 [Petunia x hybrida]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/187 (48%), Positives = 122/187 (65%), Gaps = 15/187 (8%)

Query: 5   TTLEEESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIKS----EPDS--PTFCEI 58
           TT+E++   LE I Q LLGDFTS +    SF+  ++  F  +      +P++    F E 
Sbjct: 3   TTIEDQELTLELISQHLLGDFTSTE----SFISGLDFCFSSLSDDCHYQPNNFDQDFPEF 58

Query: 59  IKPEPLDITCLGSSNWTESPQKSSEPKL----ADTEERKHYRGVRRRPWGKYAAEIRDPA 114
                + ++ + S+N + S   +++  L     D  ++KHYRGVRRRPWGKYAAEIRDP 
Sbjct: 59  ETKPNITLSPVTSANTSASSNTTNDSSLNNNTVDDGKKKHYRGVRRRPWGKYAAEIRDPT 118

Query: 115 RKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSRKRRREK-T 173
           RKGSRVWLGT+++DV+AA+AYDSAAF+MRGRKAILNFP +AG   PPA   RKRRR   T
Sbjct: 119 RKGSRVWLGTYETDVNAARAYDSAAFKMRGRKAILNFPFDAGKSVPPADIGRKRRRNNYT 178

Query: 174 LDLQEST 180
           ++   ST
Sbjct: 179 MNYTFST 185

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668915|gb|ADE41112.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/207 (45%), Positives = 120/207 (57%), Gaps = 40/207 (19%)

Query: 4   MTTLEEESSILEFIRQFLLGDFTSLDD--PNLSF-----------LQPMESEF------- 43
           M+T E++ S LE IRQ LL DFT  D    +L+F            QP++ E+       
Sbjct: 13  MSTHEQDDSTLELIRQHLLDDFTFTDSFISHLNFEITPDDISYFEFQPVKPEYSSLSESG 72

Query: 44  ------------PVIKSEPDSPTFCEI--IKPEPLDIT--CLGSSNWTESPQKSSEPKLA 87
                       P + +    P    +  ++ EPL+++  C     +      SS+ +L 
Sbjct: 73  SSSPISTPNYHSPQLSNSETKPESVNLPSMEVEPLNLSSQCSPKRKYNTCQTSSSKDELQ 132

Query: 88  DT----EERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMR 143
                 +  KHYRGVRRRPWGKYAAEIRDPARKG+RVWLGTFD+DVDAAKAYD AAF++R
Sbjct: 133 QVSGSGDVLKHYRGVRRRPWGKYAAEIRDPARKGTRVWLGTFDTDVDAAKAYDCAAFKLR 192

Query: 144 GRKAILNFPLEAGADSPPAKNSRKRRR 170
           GRKAILNFPLEAG   PP   +RKRRR
Sbjct: 193 GRKAILNFPLEAGLSEPPVNTARKRRR 219

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057954|ref|XP_002299407.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222846665|gb|EEE84212.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 101/198 (51%), Positives = 123/198 (62%), Gaps = 31/198 (15%)

Query: 9   EESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIK---------SEPDSPT----- 54
           EESS LE IRQ LLGDFTS D+    F+  +E     I          SE +SP      
Sbjct: 5   EESSTLELIRQHLLGDFTSTDE----FISNLECTVASISVKLENSLSGSESNSPVSDQSY 60

Query: 55  -----FCEI-IKPEPLDITCLGSSNWTESPQKSSEPKLADTEER-----KHYRGVRRRPW 103
                 C   IK E +D+T      +++S  +S  P+L    +R     +HYRGVRRRPW
Sbjct: 61  YSTQETCSFEIKSEIIDLTP-PEPMFSDSSNQSPPPELVKMTDREETILRHYRGVRRRPW 119

Query: 104 GKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAG-ADSPPA 162
           GK+AAEIRDP RKGSRVWLGTFDSD+DAA+AYD AAF+MRGRKAILNFPLEAG + SPPA
Sbjct: 120 GKFAAEIRDPTRKGSRVWLGTFDSDIDAARAYDCAAFKMRGRKAILNFPLEAGLSSSPPA 179

Query: 163 KNSRKRRREKTLDLQEST 180
              ++RR ++   L ES 
Sbjct: 180 TGRKRRRVKREEVLPESV 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727921|ref|NP_001237945.1| uncharacterized protein LOC100306125 [Glycine max] gi|255627625|gb|ACU14157.1| unknown [Glycine max]

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/187 (48%), Positives = 116/187 (62%), Gaps = 25/187 (13%)

Query: 9   EESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFP-----VIKSEPDSPTFCEIIKPEP 63
           EE S L+ +RQ+LLGD   + DP L+ L P++ E P     +  +  +  +FC+ ++   
Sbjct: 5   EEISTLKLLRQYLLGD---ISDPFLTNLIPVKLEDPSSGLDMGSNFSEQSSFCKFLECFD 61

Query: 64  LDITCLG--------SSNWTESPQKSSEP--------KLADTEERKHYRGVRRRPWGKYA 107
            +   +G        SS  T  PQ  + P        K A     +HYRGVRRRPWGK+A
Sbjct: 62  FEAEVVGLTSHHKVQSSIATSPPQNFNFPEEPMVSMKKEATCYATRHYRGVRRRPWGKFA 121

Query: 108 AEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSP-PAKNSR 166
           AEIRDP +KGSRVWLGTFD+++DAAKAYD AAFRMRG KA+LNFPLEAG   P P  + R
Sbjct: 122 AEIRDPKKKGSRVWLGTFDTEIDAAKAYDCAAFRMRGHKAVLNFPLEAGMSHPEPNSSGR 181

Query: 167 KRRREKT 173
           KRRRE T
Sbjct: 182 KRRREYT 188

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
TAIR|locus:2151576	201	AT5G61590 [Arabidopsis thalian	0.945	0.865	0.484	3.1e-35
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.646	0.396	0.528	6.9e-31
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.510	0.425	0.574	1.6e-30
TAIR|locus:2129106	282	ERF6 "AT4G17490" [Arabidopsis	0.793	0.517	0.440	9.1e-29
TAIR|locus:2151591	241	ERF104 "ethylene response fact	0.864	0.659	0.444	6.4e-28
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.576	0.436	0.537	8.4e-28
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.489	0.335	0.597	4.5e-27
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.358	0.217	0.727	1.4e-23
TAIR|locus:2090975	379	RAP2.2 "related to AP2 2" [Ara	0.592	0.287	0.495	2.6e-22
TAIR|locus:2086203	139	ESE1 "ethylene and salt induci	0.358	0.474	0.731	1.1e-21

TAIR|locus:2151576 AT5G61590 [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 92/190 (48%), Positives = 116/190 (61%)

Query:     9 EESSILEFIRQFL----------LGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFC-E 57
             EESS L+ I++ L          + DF   D   +S L  +E   PV K EP SP    +
Sbjct:     5 EESSDLDVIQKHLFEDLMIPDGFIEDFVFDDTAFVSGLWSLEPFNPVPKLEPSSPVLDPD 64

Query:    58 IIKPEPLDITC--LGSSNWTESPQK---SSEPKLADTEERKHYRGVRRRPWGKYAAEIRD 112
                 E L +      SS+ T SP+    S+  K    EE +HYRGVRRRPWGK+AAEIRD
Sbjct:    65 SYVQEILQMEAESSSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRD 124

Query:   113 PARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSRKRRREK 172
             PA+KGSR+WLGTF+SD+DAA+AYD AAF++RGRKA+LNFPL+AG    P  + RKRRR  
Sbjct:   125 PAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKYDAPVNSCRKRRRTD 184

Query:   173 TLDLQESTIS 182
                 Q +T S
Sbjct:   185 VPQPQGTTTS 194

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 66/125 (52%), Positives = 90/125 (72%)

Query:    49 EPDSPTFCEIIKPEPLDITCLGSSNWTESPQKSSEPKLA---DTEERKHYRGVRRRPWGK 105
             EP+  +  +I KP PL I+    + W +   ++++P++      EE+KHYRGVR+RPWGK
Sbjct:   110 EPELKS--QIRKP-PLKISLPAKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGK 166

Query:   106 YAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNS 165
             +AAEIRDP ++GSRVWLGTFD+ ++AA+AYD AAFR+RG KAILNFPLE G   P A   
Sbjct:   167 FAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKWKPRADEG 226

Query:   166 RKRRR 170
              K+R+
Sbjct:   227 EKKRK 231

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
 Identities = 58/101 (57%), Positives = 74/101 (73%)

Query:    81 SSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAF 140
             ++ P + + ++R HYRGVRRRPWGKYAAEIRDP +KG RVWLGTFD+ ++AA+ YD AAF
Sbjct:    59 TTAPVVQENDQR-HYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAF 117

Query:   141 RMRGRKAILNFPLEAGADSPPAKNSR------KRRREKTLD 175
             ++RG KAILNFPLEAG       N +      KR+R+ T D
Sbjct:   118 KLRGSKAILNFPLEAGKHEDLGDNKKTISLKAKRKRQVTED 158

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2129106 ERF6 "AT4G17490" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 67/152 (44%), Positives = 94/152 (61%)

Query:    38 PMESEFP-VIKSEPDSPTFCEIIKPEPLDITCLGSSNWTESPQKSSEPKL----ADTEER 92
             P ES      +S P   T     KP PL I     + W +    + +P+L       EE+
Sbjct:    76 PSESNDSFTFQSNPPRVTVQSNRKP-PLKIAPPNRTKWIQFATGNPKPELPVPVVAAEEK 134

Query:    93 KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 152
             +HYRGVR RPWGK+AAEIRDP R+G+RVWLGTF++ ++AA+AYD  AFR+RG KAILNFP
Sbjct:   135 RHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFP 194

Query:   153 LEAGADSPPAKNSRKRRREKTLDLQESTISII 184
             LE    +P A++ R    ++  D +E  ++++
Sbjct:   195 LEVDKWNPRAEDGRGLYNKRKRDGEEEEVTVV 226

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009644 "response to high light intensity" evidence=IMP

TAIR|locus:2151591 ERF104 "ethylene response factor 104" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 80/180 (44%), Positives = 105/180 (58%)

Query:     4 MTTLEEESSILEFIRQFLLGDFTSL--DDPNL--SFLQPMESEF-P-VIKSEPDSPTFCE 57
             M T ++E+  ++FI Q LL DF S+  D P+L  + L    SE  P  I ++   P    
Sbjct:     1 MAT-KQEALAIDFISQHLLTDFVSMETDHPSLFTNQLHNFHSETGPRTITNQSPKPNSTL 59

Query:    58 IIKPEPLDITCLGSSNWTESPQKSSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKG 117
               +  PL        N + S   S+  K    EE +HYRGVRRRPWGKYAAEIRDP +KG
Sbjct:    60 NQRKPPLP-------NLSVSRTVST--KTEKEEEERHYRGVRRRPWGKYAAEIRDPNKKG 110

Query:   118 SRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSR-----KRRREK 172
              R+WLGT+D+ V+A +AYD AAF++RGRKAILNFPL+    S            KR+R+K
Sbjct:   111 CRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDVRVTSETCSGEGVIGLGKRKRDK 170

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
 Identities = 58/108 (53%), Positives = 73/108 (67%)

Query:    76 ESPQKSSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAY 135
             E P+K+  P      + KHYRGVR+RPWGK+AAEIRDPA+ G+RVWLGTF++  DAA AY
Sbjct:    99 EKPKKAI-PVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAY 157

Query:   136 DSAAFRMRGRKAILNFPLEAGADSP-PAKNSRKRRREKTLDLQESTIS 182
             D AAFRMRG +A+LNFPL   +  P P + + KR    +     ST S
Sbjct:   158 DIAAFRMRGSRALLNFPLRVNSGEPDPVRITSKRSSSSSSSSSSSTSS 205

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
 Identities = 55/92 (59%), Positives = 68/92 (73%)

Query:    79 QKSSEPKLADTEER-KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDS 137
             +K+S    A T  + KHYRGVR+RPWGK+AAEIRDPA+ G+RVWLGTF++  DAA AYD 
Sbjct:   131 EKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDR 190

Query:   138 AAFRMRGRKAILNFPLEAGADSP-PAKNSRKR 168
             AAFRMRG +A+LNFPL   +  P P +   KR
Sbjct:   191 AAFRMRGSRALLNFPLRVNSGEPDPVRIKSKR 222

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 48/66 (72%), Positives = 58/66 (87%)

Query:    93 KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 152
             KHYRGVR+RPWGK+AAEIRDPA+ G+RVWLGTFDS  +AA AYD AA+RMRG +A+LNFP
Sbjct:   147 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDSAEEAAVAYDRAAYRMRGSRALLNFP 206

Query:   153 LEAGAD 158
             L  G++
Sbjct:   207 LRIGSE 212

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2090975 RAP2.2 "related to AP2 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 57/115 (49%), Positives = 81/115 (70%)

Query:    66 ITCLGSSNWTESPQKSSEPKLADTEERKH-YRGVRRRPWGKYAAEIRDPARKGSRVWLGT 124
             I  +GS+   ++ + + + + +   +RK+ YRG+R+RPWGK+AAEIRDP RKGSR WLGT
Sbjct:    98 IYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDP-RKGSREWLGT 156

Query:   125 FDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSRKRRREKTLDLQES 179
             FD+  +AA+AYD+AA R+RG KA +NFP E      P+  S+KR   KT +LQ+S
Sbjct:   157 FDTAEEAARAYDAAARRIRGTKAKVNFPEEKN----PSVVSQKRPSAKTNNLQKS 207

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IEP

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2086203 ESE1 "ethylene and salt inducible 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 49/67 (73%), Positives = 57/67 (85%)

Query:    88 DTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKA 147
             +T E K YRGVR+RPWGKYAAEIRD AR G+RVWLGTF++  DAA+AYD AAF MRG++A
Sbjct:     8 NTNEMK-YRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRA 66

Query:   148 ILNFPLE 154
             ILNFP E
Sbjct:    67 ILNFPHE 73

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: ERF2 AP2/ERF domain-containing transcription factor (192 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	184
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	6e-32
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-29
pfam00847	53	pfam00847, AP2, AP2 domain	5e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  109 bits (274), Expect = 6e-32
 Identities = 42/59 (71%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 94  HYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 152
            YRGVR+RPWGK+ AEIRDP  KG RVWLGTFD+  +AA+AYD AAF+ RGR A LNFP
Sbjct: 1   KYRGVRQRPWGKWVAEIRDP-SKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFP 58

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  102 bits (256), Expect = 3e-29
 Identities = 38/60 (63%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 93  KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 152
             YRGVR+RPWGK+ AEIRDP+  G R+WLGTFD+  +AA+AYD AA ++RG  A+LNFP
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 63.1 bits (154), Expect = 5e-14
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 93  KHYRGVRRRP-WGKYAAEIRDP-ARKGSRVWLGTFDSDVDAAKAYDSAAFRMRG 144
             Y+GVR    WG++ AEIRDP  +K  R  LGTF ++ +AA+A  +A  ++RG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTE-EAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.86
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.83
PHA00280	121	putative NHN endonuclease	99.63
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.32
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	81.55

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.86  E-value=1e-21  Score=135.07  Aligned_cols=61  Identities=62%  Similarity=1.211  Sum_probs=56.9

Q ss_pred             ccceeeEEcCCCeEEEEEecCCCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 030002           93 KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE  154 (184)
Q Consensus        93 S~YRGV~~~~~GkW~A~I~~~~~~Gk~i~LGtFdT~eEAArAYD~AA~~l~G~~A~lNFp~~  154 (184)
                      |+|+||+++++|+|+|+|+++. .|+++|||+|+|+||||+|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~-~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCC-CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999999999999999943 279999999999999999999999999999999999975

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.83  E-value=1.4e-20  Score=130.96  Aligned_cols=63  Identities=67%  Similarity=1.191  Sum_probs=58.7

Q ss_pred             cceeeEEcCCCeEEEEEecCCCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 030002           94 HYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGA  157 (184)
Q Consensus        94 ~YRGV~~~~~GkW~A~I~~~~~~Gk~i~LGtFdT~eEAArAYD~AA~~l~G~~A~lNFp~~~~~  157 (184)
                      +|+||+++++|+|+|+|+++. +|+++|||+|+|+||||+|||.++++++|.++.+|||.+.+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999988899999999876 479999999999999999999999999999999999998764

>PHA00280 putative NHN endonuclease

Probab=99.63  E-value=6.2e-16  Score=121.40  Aligned_cols=82  Identities=12%  Similarity=-0.008  Sum_probs=65.5

Q ss_pred             cccccCCCCCCCCCCCCCC------CCCCcCCcCCCccceeeEEcCC-CeEEEEEecCCCCCcEEecCCCCCHHHHHHHH
Q 030002           63 PLDITCLGSSNWTESPQKS------SEPKLADTEERKHYRGVRRRPW-GKYAAEIRDPARKGSRVWLGTFDSDVDAAKAY  135 (184)
Q Consensus        63 ~~~~~~~~~~~~~~~p~k~------~~~~~~~~~~tS~YRGV~~~~~-GkW~A~I~~~~~~Gk~i~LGtFdT~eEAArAY  135 (184)
                      .+||.+.+..++...+.+.      ...++..+.++|+|+||+|.+. |||+|+|.+   +||+++||.|+++|+|+.||
T Consensus        31 ~VdHidg~~~dnri~NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~  107 (121)
T PHA00280         31 YIDHIDGNPLNDALDNLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIY  107 (121)
T ss_pred             EEEcCCCCCCCCcHHHhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHH
Confidence            6788877776653332222      2233455678999999998765 999999999   89999999999999999999


Q ss_pred             HHHHHHhcCCCCC
Q 030002          136 DSAAFRMRGRKAI  148 (184)
Q Consensus       136 D~AA~~l~G~~A~  148 (184)
                      + ++.++||++|.
T Consensus       108 ~-~~~~lhGeFa~  119 (121)
T PHA00280        108 R-TRRELHGQFAR  119 (121)
T ss_pred             H-HHHHHhhcccc
Confidence            7 77889999985

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.32  E-value=4.7e-12  Score=84.88  Aligned_cols=53  Identities=28%  Similarity=0.440  Sum_probs=46.5

Q ss_pred             ccceeeEEcCC-CeEEEEEecCCCCC--cEEecCCCCCHHHHHHHHHHHHHHhcCC
Q 030002           93 KHYRGVRRRPW-GKYAAEIRDPARKG--SRVWLGTFDSDVDAAKAYDSAAFRMRGR  145 (184)
Q Consensus        93 S~YRGV~~~~~-GkW~A~I~~~~~~G--k~i~LGtFdT~eEAArAYD~AA~~l~G~  145 (184)
                      |+|+||++.+. ++|+|+|++...+|  ++++||.|++++||++||+.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            68999998875 99999999854343  8999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=81.55  E-value=5.3  Score=25.72  Aligned_cols=38  Identities=13%  Similarity=0.094  Sum_probs=28.0

Q ss_pred             eEEEEEe-cC--CCCCcEEecCCCCCHHHHHHHHHHHHHHh
Q 030002          105 KYAAEIR-DP--ARKGSRVWLGTFDSDVDAAKAYDSAAFRM  142 (184)
Q Consensus       105 kW~A~I~-~~--~~~Gk~i~LGtFdT~eEAArAYD~AA~~l  142 (184)
                      +|..+|. ..  ..+-++++-+.|.|..||-.+...+...+
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~   41 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAEL   41 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence            5788883 32  22336688999999999999988876655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	184
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		1e-23
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-23

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 55/61 (90%)
Query: 93  KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 152
           KHYRGVR+RPWGK+AAEIRDPA+ G+RVWLGTF++  DAA AYD AAFRMRG +A+LNFP
Sbjct: 4   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63
Query: 153 L 153
           L
Sbjct: 64  L 64

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 55/61 (90%)
Query: 93  KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 152
           KHYRGVR+RPWGK+AAEIRDPA+ G+RVWLGTF++  DAA AYD AAFRMRG +A+LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
Query: 153 L 153
           L
Sbjct: 61  L 61
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
1gcc_A	63	Ethylene responsive element binding factor 1; tran	5e-41

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  131 bits (332), Expect = 5e-41
 Identities = 47/62 (75%), Positives = 55/62 (88%)

Query: 93  KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 152
           KHYRGVR+RPWGK+AAEIRDPA+ G+RVWLGTF++  DAA AYD AAFRMRG +A+LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 153 LE 154
           L 
Sbjct: 61  LR 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	94.58
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	84.29

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=2.9e-26  Score=159.83  Aligned_cols=63  Identities=75%  Similarity=1.350  Sum_probs=59.6

Q ss_pred             ccceeeEEcCCCeEEEEEecCCCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 030002           93 KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEA  155 (184)
Q Consensus        93 S~YRGV~~~~~GkW~A~I~~~~~~Gk~i~LGtFdT~eEAArAYD~AA~~l~G~~A~lNFp~~~  155 (184)
                      .+||||+++++|||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|..|.+|||.++
T Consensus         1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            379999999999999999998877899999999999999999999999999999999999874

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=94.58  E-value=0.018  Score=41.38  Aligned_cols=52  Identities=23%  Similarity=0.189  Sum_probs=35.2

Q ss_pred             CCCccceeeEEcCC-CeEEEEEecCCCCCcEEe-------cCCC--CCHHHHHHHHHHHHHHhcCCC
Q 030002           90 EERKHYRGVRRRPW-GKYAAEIRDPARKGSRVW-------LGTF--DSDVDAAKAYDSAAFRMRGRK  146 (184)
Q Consensus        90 ~~tS~YRGV~~~~~-GkW~A~I~~~~~~Gk~i~-------LGtF--dT~eEAArAYD~AA~~l~G~~  146 (184)
                      ..+|+|+||+|.+. +.|.|.-.+   +|++..       +| |  +.+.+||-.|-+... -+|+.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rrsRtF~~k~yG-f~~e~Ak~~AIef~k~le-~~Gr~   64 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRRSRTFHPKHFN-MDKEKARLAAVEFMKTVE-NNGRK   64 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE---TTEEEEEEECCTTHH-HHHHHHHHHHHHHHHHTC-SSSCC
T ss_pred             CCCCCCCcEEeecCCceEEEEEec---CCeEeeeeechhhcC-cCHHHHHHHHHHHHHHHH-hcCce
Confidence            36899999999987 999999998   566543       44 4  356666666655443 34443

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=84.29  E-value=0.13  Score=40.39  Aligned_cols=71  Identities=8%  Similarity=-0.130  Sum_probs=44.2

Q ss_pred             CcccccCCCCCCCCCCCCCCCCCC----cC-CcCCCccceeeEEcCCCeEEEEEecCCCCCcEEecCCCCCHHHHHHHHH
Q 030002           62 EPLDITCLGSSNWTESPQKSSEPK----LA-DTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYD  136 (184)
Q Consensus        62 ~~~~~~~~~~~~~~~~p~k~~~~~----~~-~~~~tS~YRGV~~~~~GkW~A~I~~~~~~Gk~i~LGtFdT~eEAArAYD  136 (184)
                      ..+||.+.+..++...+.+-....    .. .......++||.+...++|.+.|..   + +..+||.|+|.+|||++|.
T Consensus        71 ~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~~~~~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           71 LVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGTLNVSKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             CEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTCCCCHHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred             CEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCcccceeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence            467888877777644433332211    00 0011122567765333679999987   4 5677999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	8e-36

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (295), Expect = 8e-36
 Identities = 47/62 (75%), Positives = 55/62 (88%)

Query: 93  KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 152
           KHYRGVR+RPWGK+AAEIRDPA+ G+RVWLGTF++  DAA AYD AAFRMRG +A+LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 153 LE 154
           L 
Sbjct: 61  LR 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=5.4e-27  Score=162.52  Aligned_cols=62  Identities=74%  Similarity=1.354  Sum_probs=59.1

Q ss_pred             cceeeEEcCCCeEEEEEecCCCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 030002           94 HYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEA  155 (184)
Q Consensus        94 ~YRGV~~~~~GkW~A~I~~~~~~Gk~i~LGtFdT~eEAArAYD~AA~~l~G~~A~lNFp~~~  155 (184)
                      +||||+++++|||+|+|+++..+++++|||+|+|+||||+|||+||++++|.+|.+|||+++
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            69999999999999999998888899999999999999999999999999999999999874