BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030003
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 79/149 (53%), Gaps = 26/149 (17%)
Query: 58 DTFRAPPLPLPYDV---VFGC-----------------PPSTDSESVGETVSGGSFETLA 97
+ FR+ P PLPYD F P +DS++ E+ G +
Sbjct: 75 EAFRSTPRPLPYDADPRYFRSLVSRREKGSSHSHEEVEPLRSDSDADSESFGVGGCKWAN 134
Query: 98 MCEVVEDADCKTQAS-----SLIASPRKSEVSQL-NVFAASEEEDTCPICLEEYDTENPK 151
+ D D K + S ++ S KS ++ N++ SE+ED CP CLEEY +ENPK
Sbjct: 135 NKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSEDEDVCPTCLEEYTSENPK 194
Query: 152 LITKCEHHFHLSCILEWNERSESCPICDQ 180
++TKC HHFHLSCI EW ERSE+CP+C +
Sbjct: 195 IVTKCSHHFHLSCIYEWMERSENCPVCGK 223
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A
PE=1 SV=1
Length = 371
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180
+D C ICLE + ++P +T C+H +HL CI+EW++RS+ CPIC Q
Sbjct: 43 DDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICWQ 88
>sp|Q9ZT42|RHF2A_ARATH E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A
PE=2 SV=1
Length = 375
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180
+D C ICLE + +P +T C+H +HL CILEW +RS CP+C Q
Sbjct: 30 DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQ 75
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 137 TCPICLEEYDTENPKLIT-KCEHHFHLSCILEWNERSESCPICDQESL 183
TCP+CLE D+E L+T C+H FH C+ +W ++ CP+C SL
Sbjct: 239 TCPVCLERMDSETTGLVTIPCQHTFHCQCLNKW--KNSRCPVCRHSSL 284
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 92 SFETLAMCEVVEDADCKTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENP 150
+FE L+ + + K L+ K +++ N AS +D+C +CL+++ E
Sbjct: 147 TFEELS--SIFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETV 204
Query: 151 KLITKCEHHFHLSCILEWNERSESCPICDQE 181
+ + C H FHL CI W R SCP+C ++
Sbjct: 205 RSLPHCHHMFHLPCIDNWLFRHGSCPMCRRD 235
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 108 KTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCIL 166
K L+ K ++ N ASE D+C +CL+++ E + + C H FHL CI
Sbjct: 166 KGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCID 225
Query: 167 EWNERSESCPICDQE 181
W R SCP+C ++
Sbjct: 226 NWLLRHGSCPMCRRD 240
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 119 RKSEVSQLNVFAA------SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172
R++ V ++N E +D C IC E+ T IT C H+FH C+ +W
Sbjct: 522 RRTAVKKINSLPEIKGSHLQEIDDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQ 579
Query: 173 ESCPICDQESLI 184
++CP+C Q+ I
Sbjct: 580 DTCPMCHQKVYI 591
>sp|P0CH01|AT21A_ARATH Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana
GN=ATL21A PE=3 SV=1
Length = 372
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 113 SLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNER 171
S+I S +K+E+ + + ++ CPICL EY + E + I +C+H FH CI W +
Sbjct: 295 SIIESYKKTELGESRRLPGNNDDIVCPICLSEYASKETVRCIPECDHCFHSECIDVWLKI 354
Query: 172 SESCPIC 178
SCP+C
Sbjct: 355 HGSCPLC 361
>sp|Q5RBT7|RN139_PONAB E3 ubiquitin-protein ligase RNF139 OS=Pongo abelii GN=RNF139 PE=2
SV=1
Length = 664
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 119 RKSEVSQLNVFAA------SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172
R++ V ++N E D C IC E+ T IT C H+FH C+ +W
Sbjct: 522 RRTAVKKINSLPEIKGSRLQEINDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQ 579
Query: 173 ESCPICDQESLI 184
++CP+C Q+ I
Sbjct: 580 DTCPMCHQKVYI 591
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 119 RKSEVSQLNVFAA------SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172
R++ V ++N E D C IC E+ T IT C H+FH C+ +W
Sbjct: 522 RRTAVKKINSLPEIKGSRLQEINDVCAICYHEFTTS--ARITPCNHYFHALCLRKWLYIQ 579
Query: 173 ESCPICDQESLI 184
++CP+C Q+ I
Sbjct: 580 DTCPMCHQKVYI 591
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 113 SLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNER 171
S I S +K E+ + + CPICL EY T E + + +CEH FH CI W +
Sbjct: 302 STIESYKKVELGESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECIDAWLKL 361
Query: 172 SESCPIC 178
SCP+C
Sbjct: 362 HSSCPVC 368
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 128 VFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQE 181
V ++++ + CP+CL E++ E + C H FH +CIL W ++ SCP+C E
Sbjct: 78 VISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHE 131
>sp|Q7KRW1|TRC8_DROME Protein TRC8 homolog OS=Drosophila melanogaster GN=Trc8 PE=1 SV=1
Length = 809
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 10/103 (9%)
Query: 85 GETVSGGSFETLAMC-EVVEDADCKTQASSLIASPRKSEVSQLNVFAASEE------EDT 137
+ +GG + MC + C+ +A + R+S V +++ + +D
Sbjct: 561 AQNATGGGIRAIMMCIHAYFNIWCEARAGWSVFMKRRSAVHKISALPEATPAQLQAFDDV 620
Query: 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180
C IC +E + IT+C H FH C+ +W + CP+C +
Sbjct: 621 CAICYQEMYSAK---ITRCRHFFHGVCLRKWLYVQDRCPLCHE 660
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICLEEY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQE 181
+C Q+
Sbjct: 280 VCKQK 284
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 127 NVFAASEEEDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180
NV + E+ C +CL E+ DT+ +L+ C H FHL CI W + +CP+C +
Sbjct: 196 NVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRR 250
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW-NERSESCP 176
K ++ +L V F +E D C ICLEEY+ + I C H +H C+ W + ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQE 181
+C Q+
Sbjct: 280 VCKQK 284
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 138 CPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180
C ICL++ T E + + KC+H FHL C+ +W R SCPIC Q
Sbjct: 176 CTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQ 219
>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2
SV=2
Length = 413
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 134 EEDTCPICLEEYD-TENPKLITKCEHHFHLSCILEWNERSESCPIC 178
E CP+CL E++ E+ +L+ KC H FH+SCI W +CP+C
Sbjct: 173 ERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLC 218
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 105 ADCKTQASSLIASP--RKSEVSQLNVFAASEEEDT----CPICLEEYD-TENPKLITKCE 157
AD T A+S++AS + + L VF S+E C +CL E++ +E +++ C+
Sbjct: 80 ADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNCQ 139
Query: 158 HHFHLSCILEWNERSESCPIC 178
H FH+ CI W +CP+C
Sbjct: 140 HTFHVDCIDMWFHSHSTCPLC 160
>sp|Q5BIY5|RN145_XENLA RING finger protein 145 OS=Xenopus laevis GN=rnf145 PE=2 SV=1
Length = 695
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 119 RKSEVSQLNVFAASEEE------DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS 172
R+ V+++ S +E D C IC Y N +IT C H FH C+ +W
Sbjct: 512 RRDAVNKIKSLPVSTKEQLEQHNDICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQ 568
Query: 173 ESCPIC 178
E+CP+C
Sbjct: 569 ETCPLC 574
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPIC 178
C +CL ++ D E +L+ KC H FH+ CI +W E+ +CP+C
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLC 165
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 125 QLNVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180
Q V A + + CPICL+ +D N + +C H F C+ EW++ CP+C Q
Sbjct: 91 QQTVPADASPDSKCPICLDRFD--NVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQ 144
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 125 QLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPIC 178
+ + S++ C +CL ++++ E +L+ KC H FH+ CI +W E+ +CP+C
Sbjct: 110 RFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLC 164
>sp|O82353|ATL67_ARATH RING-H2 finger protein ATL67 OS=Arabidopsis thaliana GN=ATL67 PE=2
SV=1
Length = 214
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 78 STDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRKSEVSQLNVFAASEE--- 134
+T ES G+ GGS + V E+ + +A ++ ++ ++ F S++
Sbjct: 67 TTAVESTGD--RGGSVILPRIIFVAEEDNEDLEAGDVVVGLDQAVINSYPKFHFSKDTSA 124
Query: 135 ----------EDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183
+ TC ICL EY + E +++ +C+H+FHL C+ W + + SCP+C L
Sbjct: 125 ASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPL 184
>sp|Q9LQM2|ATL81_ARATH RING-H2 finger protein ATL81 OS=Arabidopsis thaliana GN=ATL81 PE=2
SV=1
Length = 332
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 136 DTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQE 181
D C ICL E+ D + +LI+ C H FH CI W E ++CP+C +E
Sbjct: 152 DQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRRE 198
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW-NERSESCP 176
K ++ +L V F +E D C ICL+EY+ + I C H +H C+ W + ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQE 181
+C Q+
Sbjct: 280 VCKQK 284
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW-NERSESCP 176
K ++ +L V F +E D C ICL+EY+ + I C H +H C+ W + ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQE 181
+C Q+
Sbjct: 280 VCKQK 284
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 120 KSEVSQLNVFAASEEEDT----CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESC 175
K +++ L ++E+ CP+C E+Y E C H FH SCI+ W E ++C
Sbjct: 207 KEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTC 266
Query: 176 PICDQ 180
P+C +
Sbjct: 267 PVCRK 271
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICL+EY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQE 181
+C Q+
Sbjct: 280 VCKQK 284
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 120 KSEVSQLNV--FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCP 176
K ++ +L V F +E D C ICL+EY+ + I C H +H C+ W ++ ++CP
Sbjct: 220 KDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCP 279
Query: 177 ICDQE 181
+C Q+
Sbjct: 280 VCKQK 284
>sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1 OS=Homo sapiens
GN=PHRF1 PE=1 SV=3
Length = 1649
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 129 FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPI 177
F + ++ ++CPICL + + C H+F L CI+EW++ + SCP+
Sbjct: 99 FNSDDDAESCPICLNAFRDQAVGTPENCAHYFCLDCIVEWSKNANSCPV 147
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 125 QLNVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180
Q V A + + CPICL+ +D N + +C H F C+ EW++ CP+C Q
Sbjct: 90 QQTVPADASPDSKCPICLDRFD--NVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQ 143
>sp|Q9M313|ATL68_ARATH RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2
SV=1
Length = 212
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 134 EEDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183
E TC ICL EY + E +++ +C+H+FH+ C+ W + + SCP+C L
Sbjct: 132 RETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPL 182
>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis GN=rnf145 PE=2 SV=1
Length = 695
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPIC 178
+ D C IC Y N +IT C H FH C+ +W E+CP+C
Sbjct: 532 QHNDICSIC---YQDMNSAVITPCSHFFHPGCLKKWLYVQETCPLC 574
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183
SE C +C+ +Y T N C H FH+ CI W + +CPIC Q L
Sbjct: 626 SELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQPVL 677
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 129 FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW-NERSESCPICDQ 180
+ +E D C ICL+EY+ + I C H +H C+ W + ++CPIC Q
Sbjct: 221 YQKGDEYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQ 273
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPIC 178
C ICL E+ D E +L+ KC+H FH CI W E +CP+C
Sbjct: 128 CAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVC 169
>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1
Length = 148
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 120 KSEVSQLNVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICD 179
K +V +LN+ + C +CLE++ + I C+H FH C+++W E + CP+C+
Sbjct: 66 KEKVKELNL------HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCN 119
Query: 180 QESL 183
L
Sbjct: 120 MPVL 123
>sp|Q8N7C7|RN148_HUMAN RING finger protein 148 OS=Homo sapiens GN=RNF148 PE=2 SV=2
Length = 305
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 109 TQASSLIASPRKSEVSQLNVFAASE-------EEDTCPICLEEYDTENPKLITKCEHHFH 161
T+ S I + K + QL + E ED C +C + Y ++ I C+H FH
Sbjct: 222 TRRRSQIKTDVKKAIDQLQLRVLKEGDEELDLNEDNCVVCFDTYKPQDVVRILTCKHFFH 281
Query: 162 LSCILEWNERSESCPIC 178
+CI W +CP+C
Sbjct: 282 KACIDPWLLAHRTCPMC 298
>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2
SV=1
Length = 254
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPIC 178
C ICL E+ D + +LIT C H FH +CI W E ++CP+C
Sbjct: 103 CAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVC 144
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQE 181
CP+CL E++ CEH FH SCIL W ++ SCP+C E
Sbjct: 79 CPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHE 122
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 129 FAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW-NERSESCPICDQ 180
+ +E D C ICL+EY+ + + C H +H C+ W + ++CPIC Q
Sbjct: 221 YQKGDEYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQ 273
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 120 KSEVSQLNVFAASEEEDT----CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESC 175
K +++ L ++E+ CP+C E+Y E C H FH SCI+ W E ++C
Sbjct: 206 KEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTC 265
Query: 176 PICDQ 180
P+C +
Sbjct: 266 PVCRK 270
>sp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2
SV=2
Length = 299
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 138 CPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPIC 178
CPICL EY + E + + +C+H FH+ CI EW + SCP+C
Sbjct: 253 CPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVC 294
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPICDQESLI 184
C ICL ++ D E +++ KC H FH+ CI W SCP C Q L+
Sbjct: 114 CLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLL 161
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 121 SEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICD 179
+ + ++ + S E +C +CL+++ E + + C H FHL CI +W R SCP+C
Sbjct: 159 NRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCR 218
Query: 180 QE 181
+
Sbjct: 219 RH 220
>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2
SV=2
Length = 356
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 113 SLIASPRKSEVSQLNVFAASEEEDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNER 171
SLI S + +++ F S + C +CL E+ + E+ +L+ KC H FH+ CI W +
Sbjct: 137 SLIKSITVYKYRKMDGFVESSD---CSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKS 193
Query: 172 SESCPIC 178
+CP+C
Sbjct: 194 HSNCPLC 200
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1
Length = 148
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 120 KSEVSQLNVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICD 179
K +V +LN+ + C +CLE++ + I C+H FH C+++W E + CP+C+
Sbjct: 66 KEKVKELNL------HELCAVCLEDFKPRDELGICPCKHAFHRKCLVKWLEVRKVCPLCN 119
Query: 180 QESL 183
L
Sbjct: 120 MPVL 123
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 106 DCKTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEEYDT-ENPKLITKCEHHFHLSC 164
D + ASS +P S L + A E C ICL E++ E+ +++ KC+H FH+ C
Sbjct: 78 DPEAAASSTPTTPTLVYSSDLELAGAEAE---CAICLSEFEQGESIQVLEKCQHGFHVKC 134
Query: 165 ILEWNERSESCPIC 178
I +W SCP C
Sbjct: 135 IHKWLSTRSSCPTC 148
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 124 SQLNVFAASEEEDTCPICLEEY-DTENPKLITKCEHHFHLSCILEWNERSESCPIC 178
S + +E CP+CL E+ D E +LI +C H FH CI W +CP+C
Sbjct: 104 STVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLC 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,548,113
Number of Sequences: 539616
Number of extensions: 2668836
Number of successful extensions: 7470
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 293
Number of HSP's that attempted gapping in prelim test: 6981
Number of HSP's gapped (non-prelim): 735
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)