Query 030003
Match_columns 184
No_of_seqs 251 out of 1623
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:00:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.7 7E-18 1.5E-22 100.8 1.4 44 136-179 1-44 (44)
2 PF12678 zf-rbx1: RING-H2 zinc 99.5 2.8E-15 6.1E-20 99.0 3.0 47 133-179 17-73 (73)
3 KOG4628 Predicted E3 ubiquitin 99.5 4.8E-15 1E-19 123.0 3.0 47 136-182 230-277 (348)
4 PHA02929 N1R/p28-like protein; 99.4 1.4E-13 3.1E-18 109.6 4.5 51 133-183 172-227 (238)
5 COG5243 HRD1 HRD ubiquitin lig 99.4 9.6E-14 2.1E-18 114.7 3.1 53 132-184 284-346 (491)
6 PF13923 zf-C3HC4_2: Zinc fing 99.4 1.9E-13 4.1E-18 79.4 2.7 39 138-178 1-39 (39)
7 PF13920 zf-C3HC4_3: Zinc fing 99.4 3.6E-13 7.9E-18 82.4 3.1 47 134-183 1-48 (50)
8 PF12861 zf-Apc11: Anaphase-pr 99.4 6E-13 1.3E-17 89.1 3.7 52 133-184 19-83 (85)
9 KOG0320 Predicted E3 ubiquitin 99.3 1.8E-12 3.8E-17 97.5 5.4 50 132-182 128-177 (187)
10 PLN03208 E3 ubiquitin-protein 99.3 1.9E-12 4.1E-17 99.4 4.7 48 133-183 16-79 (193)
11 KOG0317 Predicted E3 ubiquitin 99.3 1.1E-12 2.3E-17 105.5 3.3 50 130-182 234-283 (293)
12 cd00162 RING RING-finger (Real 99.3 2.8E-12 6.1E-17 75.7 3.8 44 137-182 1-45 (45)
13 COG5540 RING-finger-containing 99.3 1.8E-12 4E-17 104.7 3.5 50 133-182 321-371 (374)
14 PF15227 zf-C3HC4_4: zinc fing 99.3 2.3E-12 5E-17 76.0 2.9 38 138-178 1-42 (42)
15 KOG0823 Predicted E3 ubiquitin 99.3 3.3E-12 7.2E-17 99.9 3.2 49 132-183 44-95 (230)
16 PF14634 zf-RING_5: zinc-RING 99.2 9.5E-12 2.1E-16 74.1 3.6 44 137-180 1-44 (44)
17 PF00097 zf-C3HC4: Zinc finger 99.2 1.1E-11 2.4E-16 72.6 2.9 39 138-178 1-41 (41)
18 smart00504 Ubox Modified RING 99.1 5.4E-11 1.2E-15 75.9 4.4 44 136-182 2-45 (63)
19 PHA02926 zinc finger-like prot 99.1 2.9E-11 6.3E-16 94.2 3.3 52 132-183 167-230 (242)
20 COG5194 APC11 Component of SCF 99.1 6.2E-11 1.4E-15 77.6 2.5 50 135-184 20-82 (88)
21 KOG0802 E3 ubiquitin ligase [P 99.1 4.4E-11 9.6E-16 106.4 1.8 50 133-182 289-340 (543)
22 smart00184 RING Ring finger. E 99.0 1.9E-10 4.1E-15 65.5 3.4 38 138-178 1-39 (39)
23 TIGR00599 rad18 DNA repair pro 99.0 1.9E-10 4.2E-15 97.8 3.8 48 132-182 23-70 (397)
24 PF13445 zf-RING_UBOX: RING-ty 98.9 1.1E-09 2.5E-14 64.6 2.9 38 138-176 1-43 (43)
25 KOG1493 Anaphase-promoting com 98.8 8E-10 1.7E-14 71.8 -0.3 52 133-184 18-82 (84)
26 COG5574 PEX10 RING-finger-cont 98.8 3.1E-09 6.7E-14 84.7 2.5 47 133-182 213-261 (271)
27 smart00744 RINGv The RING-vari 98.7 9.5E-09 2.1E-13 62.5 3.0 42 137-179 1-49 (49)
28 KOG2164 Predicted E3 ubiquitin 98.7 6.1E-09 1.3E-13 89.8 2.6 45 135-182 186-235 (513)
29 PF04564 U-box: U-box domain; 98.7 1.2E-08 2.7E-13 67.2 2.6 46 134-182 3-49 (73)
30 KOG2930 SCF ubiquitin ligase, 98.6 1.2E-08 2.6E-13 70.1 1.8 66 119-184 27-109 (114)
31 KOG0287 Postreplication repair 98.6 1.3E-08 2.7E-13 83.8 1.5 47 133-182 21-67 (442)
32 COG5432 RAD18 RING-finger-cont 98.6 2.3E-08 5E-13 80.8 2.3 47 133-182 23-69 (391)
33 KOG0828 Predicted E3 ubiquitin 98.6 2.2E-08 4.8E-13 85.9 1.7 50 133-182 569-633 (636)
34 KOG0804 Cytoplasmic Zn-finger 98.6 1.6E-08 3.4E-13 85.9 0.7 48 132-181 172-220 (493)
35 PF11793 FANCL_C: FANCL C-term 98.5 2.2E-08 4.7E-13 65.5 -0.0 49 135-183 2-66 (70)
36 PF14835 zf-RING_6: zf-RING of 98.4 6.5E-08 1.4E-12 61.3 -0.2 46 133-182 5-50 (65)
37 KOG1734 Predicted RING-contain 98.4 1.1E-07 2.4E-12 76.1 1.0 51 132-182 221-280 (328)
38 KOG0311 Predicted E3 ubiquitin 98.2 9.7E-08 2.1E-12 79.0 -2.0 49 133-183 41-90 (381)
39 COG5219 Uncharacterized conser 98.2 3.9E-07 8.4E-12 83.6 0.4 55 130-184 1464-1524(1525)
40 KOG1039 Predicted E3 ubiquitin 98.2 9.8E-07 2.1E-11 74.0 2.4 50 133-182 159-220 (344)
41 PF11789 zf-Nse: Zinc-finger o 98.1 1.4E-06 3.1E-11 54.5 2.1 43 133-177 9-53 (57)
42 KOG4265 Predicted E3 ubiquitin 98.0 3.4E-06 7.3E-11 70.2 2.9 47 133-182 288-335 (349)
43 KOG0297 TNF receptor-associate 97.9 5.2E-06 1.1E-10 71.3 2.1 49 133-183 19-67 (391)
44 KOG0978 E3 ubiquitin ligase in 97.9 3.3E-06 7.2E-11 76.2 0.8 46 134-182 642-688 (698)
45 KOG2660 Locus-specific chromos 97.9 2.3E-06 5E-11 70.5 -0.2 48 133-182 13-60 (331)
46 KOG4445 Uncharacterized conser 97.9 3.1E-06 6.7E-11 68.9 0.4 51 133-183 113-186 (368)
47 KOG0825 PHD Zn-finger protein 97.9 2.7E-06 5.7E-11 76.9 -0.3 50 133-182 121-170 (1134)
48 KOG4172 Predicted E3 ubiquitin 97.8 4.3E-06 9.3E-11 51.1 0.4 46 134-182 6-53 (62)
49 KOG4159 Predicted E3 ubiquitin 97.8 9.9E-06 2.1E-10 69.3 2.4 48 133-183 82-129 (398)
50 KOG1428 Inhibitor of type V ad 97.7 1.9E-05 4.1E-10 75.5 3.0 52 131-182 3482-3543(3738)
51 COG5152 Uncharacterized conser 97.7 1.4E-05 3E-10 61.6 1.0 44 135-181 196-239 (259)
52 PF12906 RINGv: RING-variant d 97.7 2.5E-05 5.5E-10 46.9 1.9 40 138-178 1-47 (47)
53 KOG2879 Predicted E3 ubiquitin 97.6 5.7E-05 1.2E-09 60.9 3.6 50 131-182 235-286 (298)
54 KOG1813 Predicted E3 ubiquitin 97.6 2.5E-05 5.4E-10 63.5 0.9 45 135-182 241-285 (313)
55 KOG4692 Predicted E3 ubiquitin 97.5 0.00012 2.5E-09 61.2 4.6 49 132-183 419-467 (489)
56 KOG1785 Tyrosine kinase negati 97.5 3.6E-05 7.9E-10 65.0 1.2 44 136-182 370-415 (563)
57 KOG4275 Predicted E3 ubiquitin 97.5 1.4E-05 2.9E-10 65.0 -1.8 43 134-183 299-342 (350)
58 KOG1941 Acetylcholine receptor 97.5 3.4E-05 7.5E-10 65.0 0.5 49 132-180 362-413 (518)
59 PF05883 Baculo_RING: Baculovi 97.3 7.3E-05 1.6E-09 54.4 1.1 37 133-169 24-66 (134)
60 PHA02825 LAP/PHD finger-like p 97.3 0.00026 5.7E-09 52.9 3.2 51 131-183 4-59 (162)
61 KOG1952 Transcription factor N 97.2 0.0011 2.3E-08 60.9 6.8 51 130-180 186-244 (950)
62 PF14570 zf-RING_4: RING/Ubox 97.2 0.00042 9E-09 41.6 2.8 44 138-181 1-46 (48)
63 KOG1002 Nucleotide excision re 97.0 0.00027 5.8E-09 61.9 1.3 52 130-184 531-587 (791)
64 KOG3970 Predicted E3 ubiquitin 96.9 0.00093 2E-08 52.6 3.3 51 132-183 47-105 (299)
65 COG5222 Uncharacterized conser 96.9 0.00058 1.3E-08 55.9 2.0 46 136-183 275-322 (427)
66 KOG1571 Predicted E3 ubiquitin 96.8 0.00059 1.3E-08 57.1 2.0 45 132-182 302-346 (355)
67 PF10367 Vps39_2: Vacuolar sor 96.8 0.00053 1.1E-08 47.8 1.0 35 131-166 74-108 (109)
68 KOG1814 Predicted E3 ubiquitin 96.7 0.0011 2.4E-08 56.4 2.6 48 133-180 182-237 (445)
69 COG5236 Uncharacterized conser 96.5 0.0023 4.9E-08 53.5 3.2 50 130-182 56-107 (493)
70 PHA03096 p28-like protein; Pro 96.4 0.0016 3.4E-08 53.7 1.6 45 136-180 179-231 (284)
71 KOG3039 Uncharacterized conser 96.4 0.0035 7.6E-08 50.1 3.4 50 133-182 219-269 (303)
72 KOG2114 Vacuolar assembly/sort 96.3 0.0012 2.5E-08 60.8 0.5 42 134-180 839-880 (933)
73 KOG1940 Zn-finger protein [Gen 96.2 0.0027 5.8E-08 51.9 2.1 47 134-180 157-204 (276)
74 PF04641 Rtf2: Rtf2 RING-finge 96.2 0.0053 1.1E-07 50.0 3.8 50 132-182 110-160 (260)
75 KOG0826 Predicted E3 ubiquitin 96.2 0.0061 1.3E-07 50.6 3.9 50 131-182 296-345 (357)
76 COG5175 MOT2 Transcriptional r 96.1 0.0036 7.9E-08 52.2 2.4 51 131-181 10-62 (480)
77 PF03854 zf-P11: P-11 zinc fin 96.0 0.002 4.3E-08 38.3 0.2 31 152-182 14-45 (50)
78 PF14447 Prok-RING_4: Prokaryo 95.9 0.0041 8.8E-08 38.3 1.4 44 135-183 7-50 (55)
79 KOG3268 Predicted E3 ubiquitin 95.9 0.007 1.5E-07 46.1 2.8 54 131-184 161-229 (234)
80 PF08746 zf-RING-like: RING-li 95.4 0.0079 1.7E-07 35.3 1.2 41 138-178 1-43 (43)
81 KOG1001 Helicase-like transcri 95.3 0.007 1.5E-07 55.5 1.0 43 136-182 455-499 (674)
82 KOG3053 Uncharacterized conser 95.0 0.0095 2E-07 47.9 1.0 51 131-182 16-81 (293)
83 KOG2034 Vacuolar sorting prote 94.9 0.0085 1.8E-07 55.5 0.5 48 122-170 803-851 (911)
84 COG5183 SSM4 Protein involved 94.8 0.02 4.2E-07 52.9 2.4 51 133-184 10-67 (1175)
85 PHA02862 5L protein; Provision 94.6 0.02 4.4E-07 42.2 1.7 28 156-183 24-53 (156)
86 KOG2932 E3 ubiquitin ligase in 94.3 0.02 4.4E-07 47.3 1.3 44 135-182 90-133 (389)
87 KOG0801 Predicted E3 ubiquitin 94.2 0.015 3.3E-07 43.6 0.4 30 133-162 175-204 (205)
88 KOG0298 DEAD box-containing he 94.2 0.012 2.5E-07 56.6 -0.4 45 134-180 1152-1196(1394)
89 KOG1609 Protein involved in mR 93.8 0.035 7.5E-07 45.9 1.8 49 134-182 77-133 (323)
90 KOG0827 Predicted E3 ubiquitin 93.6 0.0034 7.4E-08 53.2 -4.6 49 134-182 195-244 (465)
91 PF02891 zf-MIZ: MIZ/SP-RING z 93.5 0.087 1.9E-06 31.8 2.7 43 136-181 3-50 (50)
92 KOG1812 Predicted E3 ubiquitin 92.7 0.05 1.1E-06 46.8 1.2 39 134-172 145-184 (384)
93 PF10272 Tmpp129: Putative tra 92.6 0.16 3.5E-06 43.2 4.1 50 131-182 267-350 (358)
94 KOG3002 Zn finger protein [Gen 92.6 0.098 2.1E-06 43.5 2.7 43 133-182 46-90 (299)
95 KOG2817 Predicted E3 ubiquitin 91.5 0.18 3.8E-06 43.1 3.0 48 133-180 332-382 (394)
96 KOG4362 Transcriptional regula 91.4 0.049 1.1E-06 49.6 -0.4 47 133-182 19-68 (684)
97 KOG0309 Conserved WD40 repeat- 90.7 0.15 3.3E-06 46.9 2.0 28 150-177 1042-1069(1081)
98 PF05290 Baculo_IE-1: Baculovi 89.5 0.27 5.9E-06 35.8 2.1 47 134-182 79-131 (140)
99 KOG1100 Predicted E3 ubiquitin 89.2 0.18 3.9E-06 39.7 1.2 38 138-182 161-199 (207)
100 KOG3899 Uncharacterized conser 86.7 0.38 8.2E-06 39.7 1.6 28 156-183 325-365 (381)
101 KOG3161 Predicted E3 ubiquitin 86.4 0.32 6.9E-06 44.1 1.0 38 134-172 10-49 (861)
102 PF14446 Prok-RING_1: Prokaryo 85.9 1.1 2.4E-05 27.5 3.0 44 134-181 4-50 (54)
103 KOG0802 E3 ubiquitin ligase [P 85.4 0.45 9.7E-06 42.8 1.5 46 131-183 475-520 (543)
104 KOG3039 Uncharacterized conser 85.4 0.76 1.6E-05 37.1 2.6 38 130-170 38-75 (303)
105 PF07975 C1_4: TFIIH C1-like d 85.2 0.52 1.1E-05 28.7 1.2 42 138-179 2-50 (51)
106 KOG0825 PHD Zn-finger protein 83.1 0.87 1.9E-05 42.4 2.3 48 133-180 94-151 (1134)
107 KOG4718 Non-SMC (structural ma 83.0 0.66 1.4E-05 36.5 1.4 44 134-179 180-223 (235)
108 KOG2066 Vacuolar assembly/sort 82.5 0.49 1.1E-05 43.9 0.5 45 133-178 782-830 (846)
109 PF07191 zinc-ribbons_6: zinc- 81.4 0.1 2.2E-06 33.8 -3.1 40 136-183 2-41 (70)
110 KOG1815 Predicted E3 ubiquitin 81.1 1.1 2.3E-05 39.4 2.1 37 133-171 68-104 (444)
111 smart00249 PHD PHD zinc finger 80.7 1.1 2.3E-05 25.5 1.4 31 137-167 1-31 (47)
112 COG5109 Uncharacterized conser 80.5 1.3 2.8E-05 37.0 2.2 47 133-179 334-383 (396)
113 KOG2068 MOT2 transcription fac 79.7 1.6 3.6E-05 36.5 2.6 47 136-182 250-297 (327)
114 PF13901 DUF4206: Domain of un 79.2 1.6 3.6E-05 34.1 2.4 42 134-180 151-197 (202)
115 PF04710 Pellino: Pellino; In 78.1 0.69 1.5E-05 39.7 0.0 46 133-181 275-337 (416)
116 TIGR00622 ssl1 transcription f 78.0 2.1 4.6E-05 30.4 2.4 45 136-180 56-111 (112)
117 KOG0824 Predicted E3 ubiquitin 76.0 0.81 1.8E-05 37.9 -0.1 48 133-182 103-150 (324)
118 PF06906 DUF1272: Protein of u 75.1 4.4 9.6E-05 25.0 2.9 46 135-183 5-52 (57)
119 PF00628 PHD: PHD-finger; Int 74.9 1.4 3E-05 26.1 0.7 43 137-179 1-49 (51)
120 KOG1829 Uncharacterized conser 73.3 1.3 2.8E-05 40.1 0.4 43 134-179 510-557 (580)
121 KOG1812 Predicted E3 ubiquitin 72.2 2.1 4.6E-05 36.9 1.5 45 133-178 304-351 (384)
122 smart00132 LIM Zinc-binding do 71.7 2.9 6.3E-05 22.6 1.6 38 137-183 1-38 (39)
123 KOG2807 RNA polymerase II tran 71.6 3.5 7.6E-05 34.6 2.5 47 134-180 329-375 (378)
124 PF10235 Cript: Microtubule-as 71.4 2.5 5.4E-05 28.8 1.4 37 135-183 44-80 (90)
125 KOG0269 WD40 repeat-containing 71.1 3.2 6.9E-05 38.6 2.4 41 136-177 780-820 (839)
126 PF06844 DUF1244: Protein of u 70.1 2.8 6.1E-05 26.8 1.3 12 159-170 11-22 (68)
127 PF10571 UPF0547: Uncharacteri 68.8 3.1 6.8E-05 21.5 1.1 23 137-160 2-24 (26)
128 KOG3579 Predicted E3 ubiquitin 68.7 2.7 5.9E-05 34.6 1.3 37 133-172 266-306 (352)
129 PF00412 LIM: LIM domain; Int 62.4 2.6 5.6E-05 25.4 0.1 10 136-145 27-36 (58)
130 COG3813 Uncharacterized protei 62.0 5.8 0.00013 25.8 1.6 44 137-183 7-52 (84)
131 PF01363 FYVE: FYVE zinc finge 60.5 4.2 9.1E-05 25.7 0.8 37 133-169 7-44 (69)
132 KOG3005 GIY-YIG type nuclease 60.2 5.7 0.00012 32.5 1.7 47 136-182 183-242 (276)
133 smart00064 FYVE Protein presen 58.9 4.8 0.00011 25.3 0.9 37 134-170 9-46 (68)
134 PF04423 Rad50_zn_hook: Rad50 58.3 3.6 7.7E-05 24.9 0.2 9 174-182 22-30 (54)
135 PF14169 YdjO: Cold-inducible 57.7 5.4 0.00012 25.0 0.9 18 166-183 27-50 (59)
136 KOG2979 Protein involved in DN 57.4 5.8 0.00013 32.2 1.3 44 134-179 175-220 (262)
137 PF02318 FYVE_2: FYVE-type zin 56.9 7.4 0.00016 27.6 1.6 46 134-180 53-102 (118)
138 cd00065 FYVE FYVE domain; Zinc 56.8 9.5 0.00021 22.9 1.9 36 135-170 2-38 (57)
139 COG5627 MMS21 DNA repair prote 54.9 7.3 0.00016 31.3 1.4 42 134-177 188-231 (275)
140 PF13717 zinc_ribbon_4: zinc-r 54.8 6.5 0.00014 21.8 0.9 26 136-161 3-36 (36)
141 KOG3113 Uncharacterized conser 53.6 13 0.00028 30.2 2.7 48 133-182 109-157 (293)
142 smart00647 IBR In Between Ring 51.6 4.2 9E-05 24.9 -0.3 21 149-169 38-59 (64)
143 PF05605 zf-Di19: Drought indu 48.3 7 0.00015 23.6 0.3 12 135-146 2-13 (54)
144 KOG3799 Rab3 effector RIM1 and 47.1 3.4 7.3E-05 30.3 -1.4 51 131-181 61-116 (169)
145 PF13240 zinc_ribbon_2: zinc-r 45.8 3.4 7.4E-05 20.6 -1.1 7 174-180 15-21 (23)
146 smart00734 ZnF_Rad18 Rad18-lik 44.4 11 0.00025 19.3 0.7 9 174-182 3-11 (26)
147 PF07649 C1_3: C1-like domain; 44.0 17 0.00037 19.0 1.4 29 137-165 2-30 (30)
148 KOG2071 mRNA cleavage and poly 43.4 12 0.00027 33.9 1.2 35 133-168 511-556 (579)
149 PF10497 zf-4CXXC_R1: Zinc-fin 43.3 31 0.00066 24.1 3.0 27 154-180 31-69 (105)
150 PF13832 zf-HC5HC2H_2: PHD-zin 42.7 15 0.00032 25.4 1.4 33 134-168 54-88 (110)
151 KOG4185 Predicted E3 ubiquitin 42.6 4.2 9.2E-05 33.4 -1.7 48 134-181 206-265 (296)
152 PF04216 FdhE: Protein involve 42.4 4 8.7E-05 33.6 -1.9 45 134-180 171-219 (290)
153 PF14569 zf-UDP: Zinc-binding 42.2 41 0.0009 22.2 3.2 49 133-181 7-60 (80)
154 PF13771 zf-HC5HC2H: PHD-like 41.5 16 0.00035 24.1 1.3 35 133-167 34-68 (90)
155 COG3492 Uncharacterized protei 40.8 14 0.00031 25.1 0.9 12 159-170 42-53 (104)
156 TIGR00373 conserved hypothetic 40.4 25 0.00053 26.4 2.3 36 130-183 104-139 (158)
157 KOG2041 WD40 repeat protein [G 40.3 26 0.00056 33.0 2.8 50 131-184 1127-1186(1189)
158 PLN02189 cellulose synthase 40.1 29 0.00063 33.8 3.2 48 134-181 33-85 (1040)
159 KOG2169 Zn-finger transcriptio 39.6 33 0.00071 31.7 3.4 43 135-184 306-357 (636)
160 PF09723 Zn-ribbon_8: Zinc rib 39.6 7.2 0.00016 22.4 -0.6 28 152-180 7-34 (42)
161 cd00350 rubredoxin_like Rubred 39.3 27 0.00059 18.8 1.8 9 172-180 17-25 (33)
162 COG4847 Uncharacterized protei 39.1 22 0.00049 24.4 1.7 35 134-169 5-39 (103)
163 PRK06266 transcription initiat 38.9 30 0.00064 26.5 2.6 35 131-183 113-147 (178)
164 KOG1729 FYVE finger containing 38.4 5.7 0.00012 32.9 -1.5 36 136-171 215-250 (288)
165 PRK01343 zinc-binding protein; 37.6 19 0.00042 22.3 1.1 11 172-182 9-19 (57)
166 KOG3842 Adaptor protein Pellin 37.2 40 0.00087 28.4 3.2 50 133-182 339-413 (429)
167 PF13719 zinc_ribbon_5: zinc-r 35.9 24 0.00051 19.6 1.2 26 136-161 3-36 (37)
168 PF12773 DZR: Double zinc ribb 34.9 29 0.00063 20.2 1.6 7 174-180 31-37 (50)
169 KOG2113 Predicted RNA binding 34.5 1.4E+02 0.0031 25.3 5.9 44 133-181 341-385 (394)
170 PF14311 DUF4379: Domain of un 34.0 27 0.00059 21.0 1.4 23 155-178 33-55 (55)
171 PF03119 DNA_ligase_ZBD: NAD-d 32.7 17 0.00037 19.0 0.2 10 174-183 1-10 (28)
172 COG0267 RpmG Ribosomal protein 32.2 12 0.00027 22.5 -0.4 15 170-184 32-46 (50)
173 COG4647 AcxC Acetone carboxyla 31.9 25 0.00054 25.7 1.0 22 139-163 61-82 (165)
174 PRK03564 formate dehydrogenase 31.3 19 0.00041 30.2 0.4 45 134-180 186-234 (309)
175 PF14353 CpXC: CpXC protein 30.7 54 0.0012 23.3 2.7 11 173-183 39-49 (128)
176 PF11809 DUF3330: Domain of un 30.1 15 0.00032 23.6 -0.3 37 134-172 10-51 (70)
177 PF15616 TerY-C: TerY-C metal 29.2 27 0.00058 25.5 0.8 42 133-183 75-116 (131)
178 KOG1815 Predicted E3 ubiquitin 29.1 17 0.00037 31.9 -0.2 38 134-171 225-267 (444)
179 TIGR01562 FdhE formate dehydro 28.9 17 0.00036 30.4 -0.3 44 135-180 184-232 (305)
180 PF09237 GAGA: GAGA factor; I 28.1 17 0.00038 22.1 -0.2 7 174-180 26-32 (54)
181 TIGR01023 rpmG_bact ribosomal 28.1 20 0.00043 21.9 0.0 15 170-184 36-50 (54)
182 COG2824 PhnA Uncharacterized Z 27.6 17 0.00037 25.5 -0.4 29 136-170 4-32 (112)
183 PRK00595 rpmG 50S ribosomal pr 27.5 20 0.00043 21.8 -0.1 15 170-184 35-49 (53)
184 PF01485 IBR: IBR domain; Int 26.9 6.3 0.00014 24.1 -2.5 33 136-168 19-58 (64)
185 KOG2177 Predicted E3 ubiquitin 26.4 21 0.00046 28.2 -0.1 15 132-146 10-24 (386)
186 KOG1245 Chromatin remodeling c 26.2 24 0.00052 35.6 0.2 52 130-181 1103-1158(1404)
187 TIGR02605 CxxC_CxxC_SSSS putat 25.8 25 0.00055 20.7 0.2 24 152-180 7-34 (52)
188 PF06937 EURL: EURL protein; 25.8 63 0.0014 26.6 2.5 43 134-176 29-74 (285)
189 COG2835 Uncharacterized conser 25.7 29 0.00064 21.7 0.5 10 174-183 10-19 (60)
190 COG1675 TFA1 Transcription ini 25.4 63 0.0014 24.8 2.3 36 130-183 108-143 (176)
191 PF10146 zf-C4H2: Zinc finger- 25.2 50 0.0011 26.4 1.9 20 161-180 197-216 (230)
192 PF06677 Auto_anti-p27: Sjogre 24.7 54 0.0012 18.8 1.4 17 166-182 11-27 (41)
193 PF10013 DUF2256: Uncharacteri 23.9 45 0.00098 19.3 1.0 11 172-182 8-18 (42)
194 PRK00504 rpmG 50S ribosomal pr 22.8 27 0.0006 21.0 -0.0 14 170-183 32-45 (50)
195 COG5220 TFB3 Cdk activating ki 22.8 25 0.00054 28.5 -0.3 29 152-180 29-61 (314)
196 KOG4451 Uncharacterized conser 22.7 55 0.0012 26.3 1.6 21 160-180 251-271 (286)
197 KOG3476 Microtubule-associated 22.7 11 0.00024 25.4 -1.9 38 134-183 53-90 (100)
198 PLN02436 cellulose synthase A 22.5 89 0.0019 30.8 3.2 48 134-181 35-87 (1094)
199 PLN02638 cellulose synthase A 21.9 1E+02 0.0022 30.4 3.5 48 134-181 16-68 (1079)
200 PF09943 DUF2175: Uncharacteri 21.9 69 0.0015 22.3 1.8 33 136-169 3-35 (101)
201 smart00834 CxxC_CXXC_SSSS Puta 21.8 27 0.00059 19.3 -0.2 10 172-181 26-35 (41)
202 PF12132 DUF3587: Protein of u 21.7 53 0.0011 25.8 1.3 19 153-171 156-178 (199)
203 KOG4443 Putative transcription 21.6 38 0.00082 31.3 0.5 48 133-180 16-70 (694)
204 PF15353 HECA: Headcase protei 21.6 59 0.0013 22.8 1.4 15 155-169 39-53 (107)
205 CHL00104 rpl33 ribosomal prote 21.3 31 0.00066 22.1 -0.0 15 170-184 47-61 (66)
206 PF05810 NinF: NinF protein; 20.8 55 0.0012 20.2 1.0 25 138-170 20-44 (58)
207 smart00531 TFIIE Transcription 20.7 61 0.0013 23.8 1.4 40 131-183 95-134 (147)
208 COG5574 PEX10 RING-finger-cont 20.6 1E+02 0.0022 25.3 2.7 39 132-170 92-132 (271)
209 PHA03328 nuclear egress lamina 20.3 63 0.0014 27.1 1.6 11 1-11 119-131 (316)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.68 E-value=7e-18 Score=100.81 Aligned_cols=44 Identities=50% Similarity=1.158 Sum_probs=39.8
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccC
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICD 179 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR 179 (184)
+.|+||++.|..++.++.++|||.||.+||.+|++++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999998778889999999999999999999999999997
No 2
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.55 E-value=2.8e-15 Score=99.00 Aligned_cols=47 Identities=36% Similarity=0.967 Sum_probs=37.8
Q ss_pred CCCccccccccccCC----------CCCeEecCCCCcccHhHHHHHHhCCCCCCccC
Q 030003 133 EEEDTCPICLEEYDT----------ENPKLITKCEHHFHLSCILEWNERSESCPICD 179 (184)
Q Consensus 133 ~~~~~C~ICle~~~~----------~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR 179 (184)
..++.|+||++.|.. +-++.+.+|||.||..||.+||+.+.+||+||
T Consensus 17 ~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 17 IADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 345569999999932 23456678999999999999999999999998
No 3
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4.8e-15 Score=122.96 Aligned_cols=47 Identities=40% Similarity=1.040 Sum_probs=43.5
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhCC-CCCCccCCcc
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCPICDQES 182 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~-~tCPvCR~~l 182 (184)
+.|+||||+|..++.+++|||+|.||..||..||... ..||+|++.+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcC
Confidence 5999999999999999999999999999999999876 4599999865
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.42 E-value=1.4e-13 Score=109.58 Aligned_cols=51 Identities=25% Similarity=0.827 Sum_probs=42.4
Q ss_pred CCCccccccccccCCCC-----CeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTEN-----PKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~-----~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
..+..|+||++.+.... -.++++|+|.||..||.+|++++.+||+||+.+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 35678999999985322 1366789999999999999999999999999875
No 5
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=9.6e-14 Score=114.73 Aligned_cols=53 Identities=32% Similarity=0.889 Sum_probs=44.6
Q ss_pred CCCCcccccccccc-CCCC---------CeEecCCCCcccHhHHHHHHhCCCCCCccCCcccC
Q 030003 132 SEEEDTCPICLEEY-DTEN---------PKLITKCEHHFHLSCILEWNERSESCPICDQESLI 184 (184)
Q Consensus 132 ~~~~~~C~ICle~~-~~~~---------~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~~ 184 (184)
...+..|.||+|++ ..++ ....+||||.||.+|++.|++|+.+||+||.+++|
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 35678899999994 4331 12779999999999999999999999999999875
No 6
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.39 E-value=1.9e-13 Score=79.43 Aligned_cols=39 Identities=44% Similarity=1.155 Sum_probs=34.8
Q ss_pred ccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCcc
Q 030003 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPIC 178 (184)
Q Consensus 138 C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvC 178 (184)
|+||++.+. ++++.++|||.||..||.+|++.+..||+|
T Consensus 1 C~iC~~~~~--~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR--DPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-S--SEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCccc--CcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999997 787899999999999999999998899998
No 7
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.37 E-value=3.6e-13 Score=82.44 Aligned_cols=47 Identities=34% Similarity=0.774 Sum_probs=39.8
Q ss_pred CCccccccccccCCCCCeEecCCCCc-ccHhHHHHHHhCCCCCCccCCccc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
++..|.||++.. ..++++||||. ||..|+.+|++....||+||++|.
T Consensus 1 ~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENP---RDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSB---SSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccC---CceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 356899999997 44699999999 999999999999999999999873
No 8
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.36 E-value=6e-13 Score=89.10 Aligned_cols=52 Identities=37% Similarity=0.914 Sum_probs=42.5
Q ss_pred CCCccccccccccCC----------CCCeEecCCCCcccHhHHHHHHhC---CCCCCccCCcccC
Q 030003 133 EEEDTCPICLEEYDT----------ENPKLITKCEHHFHLSCILEWNER---SESCPICDQESLI 184 (184)
Q Consensus 133 ~~~~~C~ICle~~~~----------~~~~~~~~C~H~Fh~~CI~~Wl~~---~~tCPvCR~~l~~ 184 (184)
.+++.|.||...|+. +-+++.-.|+|.||.+||.+|++. +.+||+||+++.|
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 357889999998862 225566789999999999999986 4699999998764
No 9
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.8e-12 Score=97.49 Aligned_cols=50 Identities=34% Similarity=0.772 Sum_probs=43.0
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
.+....|+|||+.+....+ +-++|||+||..||+..++....||+||+.|
T Consensus 128 ~~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkI 177 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKI 177 (187)
T ss_pred cccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCccccc
Confidence 3556899999999973333 6699999999999999999999999999865
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.31 E-value=1.9e-12 Score=99.44 Aligned_cols=48 Identities=31% Similarity=0.869 Sum_probs=40.3
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC----------------CCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----------------SESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----------------~~tCPvCR~~l~ 183 (184)
.++..|+||++.+. ++ ++++|||.||+.||.+|+.. ...||+||..+.
T Consensus 16 ~~~~~CpICld~~~--dP-VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVR--DP-VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCC--Cc-EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 46788999999985 66 77899999999999999853 247999999763
No 11
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.1e-12 Score=105.47 Aligned_cols=50 Identities=40% Similarity=0.927 Sum_probs=45.1
Q ss_pred ccCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 130 AASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
...+....|.|||+... ++ ..+||||+||..||.+|...+..||+||..+
T Consensus 234 ~i~~a~~kC~LCLe~~~--~p-SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~ 283 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRS--NP-SATPCGHIFCWSCILEWCSEKAECPLCREKF 283 (293)
T ss_pred cCCCCCCceEEEecCCC--CC-CcCcCcchHHHHHHHHHHccccCCCcccccC
Confidence 55567789999999986 77 9999999999999999999999999999864
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.29 E-value=2.8e-12 Score=75.69 Aligned_cols=44 Identities=41% Similarity=1.049 Sum_probs=38.5
Q ss_pred cccccccccCCCCCeEecCCCCcccHhHHHHHHhC-CCCCCccCCcc
Q 030003 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQES 182 (184)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~tCPvCR~~l 182 (184)
.|+||++.+. +++.+++|||.||..|+..|++. +..||+||+.+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999994 67677789999999999999987 77899999864
No 13
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.8e-12 Score=104.67 Aligned_cols=50 Identities=26% Similarity=0.806 Sum_probs=45.1
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHh-CCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE-RSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~-~~~tCPvCR~~l 182 (184)
...-.|+|||+.|.-.+.++++||.|.||..||.+||. .+..||+||.++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~i 371 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCC
Confidence 44568999999998778889999999999999999998 688999999876
No 14
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.28 E-value=2.3e-12 Score=75.95 Aligned_cols=38 Identities=39% Similarity=0.964 Sum_probs=30.0
Q ss_pred ccccccccCCCCCeEecCCCCcccHhHHHHHHhCC----CCCCcc
Q 030003 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPIC 178 (184)
Q Consensus 138 C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~----~tCPvC 178 (184)
|+||++.|. +| +.++|||.||..||.+|++.. ..||+|
T Consensus 1 CpiC~~~~~--~P-v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK--DP-VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S--SE-EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC--Cc-cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999996 77 889999999999999999764 369987
No 15
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.3e-12 Score=99.86 Aligned_cols=49 Identities=33% Similarity=0.822 Sum_probs=42.4
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC---CCCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER---SESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~---~~tCPvCR~~l~ 183 (184)
......|-||||.-. ++ +++.|||.||+.||++|++. ++.||||+..|-
T Consensus 44 ~~~~FdCNICLd~ak--dP-VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK--DP-VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCceeeeeeccccC--CC-EEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 456788999999985 77 99999999999999999986 457999998763
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.23 E-value=9.5e-12 Score=74.10 Aligned_cols=44 Identities=36% Similarity=0.875 Sum_probs=39.3
Q ss_pred cccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCC
Q 030003 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (184)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~ 180 (184)
.|+||++.|..+.+..+++|||+||..||..++.....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999965567799999999999999999977789999986
No 17
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.20 E-value=1.1e-11 Score=72.57 Aligned_cols=39 Identities=44% Similarity=1.218 Sum_probs=34.9
Q ss_pred ccccccccCCCCCeEecCCCCcccHhHHHHHHh--CCCCCCcc
Q 030003 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNE--RSESCPIC 178 (184)
Q Consensus 138 C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~--~~~tCPvC 178 (184)
|+||++.+. +++.+++|||.||..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~--~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE--DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS--SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc--CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999996 6656999999999999999999 45689998
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.14 E-value=5.4e-11 Score=75.91 Aligned_cols=44 Identities=25% Similarity=0.449 Sum_probs=40.2
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
..|+||++.+. +| ++++|||+|++.||.+|++.+.+||+|++.+
T Consensus 2 ~~Cpi~~~~~~--~P-v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~ 45 (63)
T smart00504 2 FLCPISLEVMK--DP-VILPSGQTYERRAIEKWLLSHGTDPVTGQPL 45 (63)
T ss_pred cCCcCCCCcCC--CC-EECCCCCEEeHHHHHHHHHHCCCCCCCcCCC
Confidence 57999999997 77 7789999999999999999988999999876
No 19
>PHA02926 zinc finger-like protein; Provisional
Probab=99.13 E-value=2.9e-11 Score=94.17 Aligned_cols=52 Identities=31% Similarity=0.764 Sum_probs=40.3
Q ss_pred CCCCccccccccccCCC----C--CeEecCCCCcccHhHHHHHHhCC------CCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTE----N--PKLITKCEHHFHLSCILEWNERS------ESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~----~--~~~~~~C~H~Fh~~CI~~Wl~~~------~tCPvCR~~l~ 183 (184)
...+.+|+||||..... + ..++.+|+|.||..||..|.+.+ .+||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 35678899999986321 1 23777999999999999999753 46999999764
No 20
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=99.08 E-value=6.2e-11 Score=77.58 Aligned_cols=50 Identities=32% Similarity=0.709 Sum_probs=39.6
Q ss_pred CccccccccccC-----------C--CCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcccC
Q 030003 135 EDTCPICLEEYD-----------T--ENPKLITKCEHHFHLSCILEWNERSESCPICDQESLI 184 (184)
Q Consensus 135 ~~~C~ICle~~~-----------~--~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~~ 184 (184)
-+.|.||...|. . +-+++.-.|.|.||.+||.+||..++.||++|+.+++
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 467777776553 1 1245667899999999999999999999999998764
No 21
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.4e-11 Score=106.36 Aligned_cols=50 Identities=36% Similarity=0.787 Sum_probs=43.1
Q ss_pred CCCccccccccccCCCCC--eEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENP--KLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~--~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
..+..|+||+|.+..+.. ..+++|+|.||..|++.||+++.+||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 457899999999964322 58999999999999999999999999999843
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=99.05 E-value=1.9e-10 Score=65.45 Aligned_cols=38 Identities=47% Similarity=1.176 Sum_probs=33.2
Q ss_pred ccccccccCCCCCeEecCCCCcccHhHHHHHHh-CCCCCCcc
Q 030003 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNE-RSESCPIC 178 (184)
Q Consensus 138 C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~-~~~tCPvC 178 (184)
|+||++.. ...+.++|||.||..|+..|++ ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999985 4558899999999999999998 66789987
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=1.9e-10 Score=97.81 Aligned_cols=48 Identities=31% Similarity=0.746 Sum_probs=42.8
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
.+....|+||++.|. ++ ++++|||.||..||..|+.....||+||..+
T Consensus 23 Le~~l~C~IC~d~~~--~P-vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~ 70 (397)
T TIGR00599 23 LDTSLRCHICKDFFD--VP-VLTSCSHTFCSLCIRRCLSNQPKCPLCRAED 70 (397)
T ss_pred cccccCCCcCchhhh--Cc-cCCCCCCchhHHHHHHHHhCCCCCCCCCCcc
Confidence 456789999999996 77 5799999999999999999988999999865
No 24
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.90 E-value=1.1e-09 Score=64.58 Aligned_cols=38 Identities=39% Similarity=0.997 Sum_probs=23.6
Q ss_pred cccccccc-CCCCCeEecCCCCcccHhHHHHHHhCC----CCCC
Q 030003 138 CPICLEEY-DTENPKLITKCEHHFHLSCILEWNERS----ESCP 176 (184)
Q Consensus 138 C~ICle~~-~~~~~~~~~~C~H~Fh~~CI~~Wl~~~----~tCP 176 (184)
|+||++ | ..+++.++|+|||+|+.+||.+|++.+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 7 445666889999999999999999854 2576
No 25
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8e-10 Score=71.82 Aligned_cols=52 Identities=35% Similarity=0.791 Sum_probs=39.8
Q ss_pred CCCccccccccccCCC----------CCeEecCCCCcccHhHHHHHHhC---CCCCCccCCcccC
Q 030003 133 EEEDTCPICLEEYDTE----------NPKLITKCEHHFHLSCILEWNER---SESCPICDQESLI 184 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~----------~~~~~~~C~H~Fh~~CI~~Wl~~---~~tCPvCR~~l~~ 184 (184)
..+++|.||.-.|+.. -|.+.-.|.|.||..||.+|+.. +..||+||+.+.|
T Consensus 18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 3455899999888531 24344579999999999999975 3479999998764
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.1e-09 Score=84.71 Aligned_cols=47 Identities=38% Similarity=0.891 Sum_probs=40.7
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHH-HHhCCCC-CCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILE-WNERSES-CPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~-Wl~~~~t-CPvCR~~l 182 (184)
+.+..|+||++... .+ ..++|||+||..||.. |-.++.. ||+||+.+
T Consensus 213 ~~d~kC~lC~e~~~--~p-s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPE--VP-SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccC--Cc-ccccccchhhHHHHHHHHHhhccccCchhhhhc
Confidence 66889999999984 55 9999999999999999 9776665 99999864
No 27
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.73 E-value=9.5e-09 Score=62.46 Aligned_cols=42 Identities=36% Similarity=0.944 Sum_probs=33.6
Q ss_pred cccccccccCCCCCeEecCCC-----CcccHhHHHHHHhCC--CCCCccC
Q 030003 137 TCPICLEEYDTENPKLITKCE-----HHFHLSCILEWNERS--ESCPICD 179 (184)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~-----H~Fh~~CI~~Wl~~~--~tCPvCR 179 (184)
.|.||++....+++ .+.||. |+||..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~~~~~~~~-l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDP-LVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCe-eEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999994444455 788985 999999999999654 4899995
No 28
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=6.1e-09 Score=89.76 Aligned_cols=45 Identities=44% Similarity=0.873 Sum_probs=38.0
Q ss_pred CccccccccccCCCCCeEecCCCCcccHhHHHHHHhCC-----CCCCccCCcc
Q 030003 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-----ESCPICDQES 182 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~-----~tCPvCR~~l 182 (184)
+..|||||+... -+ .++.|||+||..||..++..+ ..||+||..|
T Consensus 186 ~~~CPICL~~~~--~p-~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I 235 (513)
T KOG2164|consen 186 DMQCPICLEPPS--VP-VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTI 235 (513)
T ss_pred CCcCCcccCCCC--cc-cccccCceeeHHHHHHHHhhhcccCCccCCchhhhc
Confidence 788999999984 44 667799999999999998765 4899999865
No 29
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.67 E-value=1.2e-08 Score=67.16 Aligned_cols=46 Identities=30% Similarity=0.489 Sum_probs=37.2
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC-CCCCCccCCcc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~tCPvCR~~l 182 (184)
++..|+|+.+.+. +| +++++||+|.+.+|.+|++. ..+||+|++.+
T Consensus 3 ~~f~CpIt~~lM~--dP-Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l 49 (73)
T PF04564_consen 3 DEFLCPITGELMR--DP-VILPSGHTYERSAIERWLEQNGGTDPFTRQPL 49 (73)
T ss_dssp GGGB-TTTSSB-S--SE-EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-
T ss_pred cccCCcCcCcHhh--Cc-eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcC
Confidence 5678999999997 88 67899999999999999998 88999998876
No 30
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.2e-08 Score=70.10 Aligned_cols=66 Identities=27% Similarity=0.585 Sum_probs=47.8
Q ss_pred cchhhhhcccc---ccCCCCccccccccccC-------------CCC-CeEecCCCCcccHhHHHHHHhCCCCCCccCCc
Q 030003 119 RKSEVSQLNVF---AASEEEDTCPICLEEYD-------------TEN-PKLITKCEHHFHLSCILEWNERSESCPICDQE 181 (184)
Q Consensus 119 ~~~~~~~~~~~---~~~~~~~~C~ICle~~~-------------~~~-~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~ 181 (184)
+..+++|-... .-....+.|+||..-+. .++ .+..-.|.|.||..||.+||+.++.||+|.++
T Consensus 27 krF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 27 KRFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred cceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 34456665544 44457788999974431 112 33556799999999999999999999999998
Q ss_pred ccC
Q 030003 182 SLI 184 (184)
Q Consensus 182 l~~ 184 (184)
.+|
T Consensus 107 W~~ 109 (114)
T KOG2930|consen 107 WVF 109 (114)
T ss_pred eeE
Confidence 765
No 31
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.61 E-value=1.3e-08 Score=83.84 Aligned_cols=47 Identities=32% Similarity=0.737 Sum_probs=41.6
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
..-..|.||.|.|. .+ +++||+|.||.-||...|..+..||.|+..+
T Consensus 21 D~lLRC~IC~eyf~--ip-~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~ 67 (442)
T KOG0287|consen 21 DDLLRCGICFEYFN--IP-MITPCSHTFCSLCIRKFLSYKPQCPTCCVTV 67 (442)
T ss_pred HHHHHHhHHHHHhc--Cc-eeccccchHHHHHHHHHhccCCCCCceeccc
Confidence 45678999999994 44 8899999999999999999999999998764
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.59 E-value=2.3e-08 Score=80.79 Aligned_cols=47 Identities=28% Similarity=0.576 Sum_probs=41.8
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
..-+.|.||-+.|. .+ ..++|||.||.-||...|..+..||+||.+.
T Consensus 23 Ds~lrC~IC~~~i~--ip-~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 23 DSMLRCRICDCRIS--IP-CETTCGHTFCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred hhHHHhhhhhheee--cc-eecccccchhHHHHHHHhcCCCCCccccccH
Confidence 45678999999995 55 8999999999999999999999999999753
No 33
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.2e-08 Score=85.89 Aligned_cols=50 Identities=30% Similarity=0.807 Sum_probs=39.9
Q ss_pred CCCccccccccccCC---CC-----------CeEecCCCCcccHhHHHHHHh-CCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDT---EN-----------PKLITKCEHHFHLSCILEWNE-RSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~---~~-----------~~~~~~C~H~Fh~~CI~~Wl~-~~~tCPvCR~~l 182 (184)
+....|+||+..+.. +. ...++||.|+||..|+..||+ .+-.||+||+++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pL 633 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPL 633 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCC
Confidence 455679999988742 11 125679999999999999999 566999999986
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.56 E-value=1.6e-08 Score=85.88 Aligned_cols=48 Identities=42% Similarity=0.971 Sum_probs=39.3
Q ss_pred CCCCccccccccccCCC-CCeEecCCCCcccHhHHHHHHhCCCCCCccCCc
Q 030003 132 SEEEDTCPICLEEYDTE-NPKLITKCEHHFHLSCILEWNERSESCPICDQE 181 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~-~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~ 181 (184)
..+-.+||||||.++.. ..++.+.|.|.||..|+.+|... +||+||.-
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~--scpvcR~~ 220 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS--SCPVCRYC 220 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC--cChhhhhh
Confidence 35667899999999643 44577889999999999999654 89999963
No 35
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.50 E-value=2.2e-08 Score=65.46 Aligned_cols=49 Identities=35% Similarity=0.742 Sum_probs=23.9
Q ss_pred CccccccccccCC--CCCeEe---cCCCCcccHhHHHHHHhC---C--------CCCCccCCccc
Q 030003 135 EDTCPICLEEYDT--ENPKLI---TKCEHHFHLSCILEWNER---S--------ESCPICDQESL 183 (184)
Q Consensus 135 ~~~C~ICle~~~~--~~~~~~---~~C~H~Fh~~CI~~Wl~~---~--------~tCPvCR~~l~ 183 (184)
+..|.||+..+.. +.+.++ ..|++.||..||.+||.. + .+||.|+++|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 4579999998752 223322 279999999999999973 1 26999999875
No 36
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.37 E-value=6.5e-08 Score=61.25 Aligned_cols=46 Identities=35% Similarity=0.777 Sum_probs=25.0
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
++-..|++|.+.+. +|+.+..|.|.||..||..-+. ..||+|+.+.
T Consensus 5 e~lLrCs~C~~~l~--~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Pa 50 (65)
T PF14835_consen 5 EELLRCSICFDILK--EPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPA 50 (65)
T ss_dssp HHTTS-SSS-S--S--S-B---SSS--B-TTTGGGGTT--TB-SSS--B-
T ss_pred HHhcCCcHHHHHhc--CCceeccCccHHHHHHhHHhcC--CCCCCcCChH
Confidence 34568999999997 8888999999999999988554 3599998764
No 37
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.1e-07 Score=76.13 Aligned_cols=51 Identities=25% Similarity=0.718 Sum_probs=41.1
Q ss_pred CCCCccccccccccCCCC-------CeEecCCCCcccHhHHHHHH--hCCCCCCccCCcc
Q 030003 132 SEEEDTCPICLEEYDTEN-------PKLITKCEHHFHLSCILEWN--ERSESCPICDQES 182 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~-------~~~~~~C~H~Fh~~CI~~Wl--~~~~tCPvCR~~l 182 (184)
..++..|.||-..+.... ....+.|+|.||..||+.|- ..+.+||-|+..+
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 357788999998885432 44789999999999999995 4577999998754
No 38
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=9.7e-08 Score=79.05 Aligned_cols=49 Identities=27% Similarity=0.686 Sum_probs=41.1
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC-CCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~tCPvCR~~l~ 183 (184)
..+..|+|||+.+. .......|.|.||..||..-|.. .++||.||+.+.
T Consensus 41 ~~~v~c~icl~llk--~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLK--KTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHH--hhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 56778999999996 55556679999999999999876 569999999764
No 39
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.18 E-value=3.9e-07 Score=83.58 Aligned_cols=55 Identities=25% Similarity=0.709 Sum_probs=41.5
Q ss_pred ccCCCCccccccccccCCCCC----eEecCCCCcccHhHHHHHHhC--CCCCCccCCcccC
Q 030003 130 AASEEEDTCPICLEEYDTENP----KLITKCEHHFHLSCILEWNER--SESCPICDQESLI 184 (184)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~----~~~~~C~H~Fh~~CI~~Wl~~--~~tCPvCR~~l~~ 184 (184)
...+...+|+||+..+..-+. .+...|.|.||..|+.+|+.. +.+||+||.++.|
T Consensus 1464 ~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1464 EKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 344566789999987742111 144569999999999999986 4589999998865
No 40
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=9.8e-07 Score=73.99 Aligned_cols=50 Identities=36% Similarity=0.908 Sum_probs=39.1
Q ss_pred CCCccccccccccCCCC-----CeEecCCCCcccHhHHHHHH--hC-----CCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTEN-----PKLITKCEHHFHLSCILEWN--ER-----SESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~-----~~~~~~C~H~Fh~~CI~~Wl--~~-----~~tCPvCR~~l 182 (184)
..+.+|.||++...... -.++.+|.|.||..||..|- .+ ++.||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45778999999985322 22457799999999999998 34 57899999764
No 41
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.13 E-value=1.4e-06 Score=54.50 Aligned_cols=43 Identities=35% Similarity=0.789 Sum_probs=31.3
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC--CCCCCc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER--SESCPI 177 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~--~~tCPv 177 (184)
.-...|||.+..|. +|+.-..|||+|-+..|.+||++ ...||+
T Consensus 9 ~~~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45678999999998 99898999999999999999944 447998
No 42
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=3.4e-06 Score=70.22 Aligned_cols=47 Identities=30% Similarity=0.707 Sum_probs=40.1
Q ss_pred CCCccccccccccCCCCCeEecCCCCc-ccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
+....|.|||.+.. + .+++||.|. .|..|.+...-..+.||+||++|
T Consensus 288 ~~gkeCVIClse~r--d-t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi 335 (349)
T KOG4265|consen 288 ESGKECVICLSESR--D-TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPI 335 (349)
T ss_pred cCCCeeEEEecCCc--c-eEEecchhhehhHhHHHHHHHhhcCCCccccch
Confidence 44678999999984 4 499999994 89999998877788999999986
No 43
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.90 E-value=5.2e-06 Score=71.27 Aligned_cols=49 Identities=37% Similarity=0.830 Sum_probs=43.2
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
+++..|+||...+. +++..+.|||.||..||..|+..+..||.|++.+.
T Consensus 19 ~~~l~C~~C~~vl~--~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 19 DENLLCPICMSVLR--DPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred cccccCcccccccc--CCCCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 57788999999996 77555799999999999999999999999988764
No 44
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=3.3e-06 Score=76.15 Aligned_cols=46 Identities=33% Similarity=0.728 Sum_probs=39.4
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHh-CCCCCCccCCcc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE-RSESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~-~~~tCPvCR~~l 182 (184)
+-..|+.|-..+ .-+++++|+|.||..||..-++ |...||.|...|
T Consensus 642 ~~LkCs~Cn~R~---Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aF 688 (698)
T KOG0978|consen 642 ELLKCSVCNTRW---KDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAF 688 (698)
T ss_pred hceeCCCccCch---hhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 557899999887 4459999999999999999986 466999998875
No 45
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.89 E-value=2.3e-06 Score=70.46 Aligned_cols=48 Identities=35% Similarity=0.668 Sum_probs=42.4
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
....+|.+|-..|. +...++.|-|.||.+||.+.|+.+++||+|+..|
T Consensus 13 n~~itC~LC~GYli--DATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 13 NPHITCRLCGGYLI--DATTITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred ccceehhhccceee--cchhHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 46778999999997 6667889999999999999999999999997543
No 46
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.88 E-value=3.1e-06 Score=68.88 Aligned_cols=51 Identities=24% Similarity=0.703 Sum_probs=42.2
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC-----------------------CCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-----------------------SESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-----------------------~~tCPvCR~~l~ 183 (184)
.....|.|||--|..+...+++.|-|.||..|+.++|.. ...||+||..|.
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 455679999999987777899999999999999987641 236999998775
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.87 E-value=2.7e-06 Score=76.88 Aligned_cols=50 Identities=24% Similarity=0.583 Sum_probs=41.6
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
.....|+||+..+.........+|+|.||.+||..|-+.-.+||+||..+
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF 170 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEF 170 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhh
Confidence 34567999999886444445678999999999999999999999999875
No 48
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=4.3e-06 Score=51.06 Aligned_cols=46 Identities=28% Similarity=0.647 Sum_probs=36.8
Q ss_pred CCccccccccccCCCCCeEecCCCC-cccHhHHHHHHh-CCCCCCccCCcc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEH-HFHLSCILEWNE-RSESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H-~Fh~~CI~~Wl~-~~~tCPvCR~~l 182 (184)
-+++|.||+|... +. ++-.||| -.|..|-.+.++ .+..||+||.+|
T Consensus 6 ~~dECTICye~pv--ds-VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 6 WSDECTICYEHPV--DS-VLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cccceeeeccCcc--hH-HHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 3478999999764 44 6778999 578999887666 688999999875
No 49
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=9.9e-06 Score=69.31 Aligned_cols=48 Identities=29% Similarity=0.724 Sum_probs=42.3
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
..+..|.||+..+. .+ +.++|||.||..||.+-|..+..||.||.++.
T Consensus 82 ~sef~c~vc~~~l~--~p-v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 82 RSEFECCVCSRALY--PP-VVTPCGHSFCLECLDRSLDQETECPLCRDELV 129 (398)
T ss_pred cchhhhhhhHhhcC--CC-ccccccccccHHHHHHHhccCCCCcccccccc
Confidence 56788999999985 66 77799999999999999999999999998764
No 50
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.74 E-value=1.9e-05 Score=75.49 Aligned_cols=52 Identities=35% Similarity=0.742 Sum_probs=44.5
Q ss_pred cCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCC----------CCCCccCCcc
Q 030003 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----------ESCPICDQES 182 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~----------~tCPvCR~~l 182 (184)
..+.++.|.||+.+--...|.+.+.|+|.||..|....|++. -+||+|+++|
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 446789999999888667888999999999999999888764 2799999876
No 51
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.68 E-value=1.4e-05 Score=61.58 Aligned_cols=44 Identities=27% Similarity=0.828 Sum_probs=39.2
Q ss_pred CccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCc
Q 030003 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQE 181 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~ 181 (184)
...|.||.++|. .| +++.|||+||..|..+-++.-.+|-+|.+.
T Consensus 196 PF~C~iCKkdy~--sp-vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYE--SP-VVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred ceeehhchhhcc--ch-hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 458999999995 56 899999999999999988888999999764
No 52
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=97.68 E-value=2.5e-05 Score=46.91 Aligned_cols=40 Identities=40% Similarity=1.010 Sum_probs=28.9
Q ss_pred ccccccccCCCCCeEecCCC-----CcccHhHHHHHHhC--CCCCCcc
Q 030003 138 CPICLEEYDTENPKLITKCE-----HHFHLSCILEWNER--SESCPIC 178 (184)
Q Consensus 138 C~ICle~~~~~~~~~~~~C~-----H~Fh~~CI~~Wl~~--~~tCPvC 178 (184)
|-||++.-..+++ ++.||. ...|..|+.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~~-li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEP-LISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCc-eecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 7899999865554 788885 58999999999974 5679987
No 53
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=5.7e-05 Score=60.93 Aligned_cols=50 Identities=30% Similarity=0.696 Sum_probs=41.9
Q ss_pred cCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC--CCCCCccCCcc
Q 030003 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER--SESCPICDQES 182 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~--~~tCPvCR~~l 182 (184)
....+.+|++|-+... .|-+..+|+|+||..||..-+.- +.+||.|....
T Consensus 235 ~~t~~~~C~~Cg~~Pt--iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPT--IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV 286 (298)
T ss_pred cccCCceeeccCCCCC--CCeeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence 3456789999999887 88899999999999999987653 57999998654
No 54
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=2.5e-05 Score=63.54 Aligned_cols=45 Identities=33% Similarity=0.735 Sum_probs=40.4
Q ss_pred CccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
.+.|-||-..|. ++ +++.|+|+||..|...-+++...|.+|.+.+
T Consensus 241 Pf~c~icr~~f~--~p-Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFY--RP-VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccc--cc-hhhcCCceeehhhhccccccCCcceeccccc
Confidence 355999999996 67 9999999999999999999999999998764
No 55
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00012 Score=61.19 Aligned_cols=49 Identities=22% Similarity=0.584 Sum_probs=41.9
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
..|++.|+||+-.. ...+..||+|.-|..||.+-|.+.+.|=.|+..++
T Consensus 419 ~sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CcccccCcceeccc---chhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 35778899998766 44589999999999999999999999999987653
No 56
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.50 E-value=3.6e-05 Score=65.05 Aligned_cols=44 Identities=32% Similarity=0.826 Sum_probs=37.1
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhC--CCCCCccCCcc
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER--SESCPICDQES 182 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~--~~tCPvCR~~l 182 (184)
..|-||-|.= ..+.+-||||..|..|+..|-.. .++||.||.+|
T Consensus 370 eLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEI 415 (563)
T ss_pred HHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEe
Confidence 4699998874 45588899999999999999854 46999999876
No 57
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=1.4e-05 Score=64.99 Aligned_cols=43 Identities=26% Similarity=0.617 Sum_probs=34.3
Q ss_pred CCccccccccccCCCCCeEecCCCC-cccHhHHHHHHhCCCCCCccCCccc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEH-HFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H-~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
....|.||++... +. +.|+||| .-|..|-++. +.||+||+.|+
T Consensus 299 ~~~LC~ICmDaP~--DC-vfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 299 TRRLCAICMDAPR--DC-VFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHHhcCCc--ce-EEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 3778999999884 55 9999999 5688887554 38999998763
No 58
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.45 E-value=3.4e-05 Score=65.00 Aligned_cols=49 Identities=37% Similarity=0.687 Sum_probs=40.0
Q ss_pred CCCCccccccccccCCCC-CeEecCCCCcccHhHHHHHHhCC--CCCCccCC
Q 030003 132 SEEEDTCPICLEEYDTEN-PKLITKCEHHFHLSCILEWNERS--ESCPICDQ 180 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~-~~~~~~C~H~Fh~~CI~~Wl~~~--~tCPvCR~ 180 (184)
.+.+..|..|=+.+...+ ..-.+||.|+||..|+.++|+++ .+||.||+
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 356778999999995433 33678999999999999999875 48999995
No 59
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=97.34 E-value=7.3e-05 Score=54.38 Aligned_cols=37 Identities=19% Similarity=0.474 Sum_probs=31.5
Q ss_pred CCCccccccccccCCCCCeEecCCC------CcccHhHHHHHH
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCE------HHFHLSCILEWN 169 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~------H~Fh~~CI~~Wl 169 (184)
.-..+|.||++.+..++.++.+.|| |.||.+|+.+|-
T Consensus 24 ~~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 24 RCTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred ccCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 3467899999999766688888887 999999999993
No 60
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=97.26 E-value=0.00026 Score=52.86 Aligned_cols=51 Identities=33% Similarity=0.685 Sum_probs=36.0
Q ss_pred cCCCCccccccccccCCCCCeEecCCCC---cccHhHHHHHHhCC--CCCCccCCccc
Q 030003 131 ASEEEDTCPICLEEYDTENPKLITKCEH---HFHLSCILEWNERS--ESCPICDQESL 183 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H---~Fh~~CI~~Wl~~~--~tCPvCR~~l~ 183 (184)
....+..|-||.++... ....-.|.. ..|++|+.+|+..+ .+|++|+.+..
T Consensus 4 ~s~~~~~CRIC~~~~~~--~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 4 VSLMDKCCWICKDEYDV--VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred cCCCCCeeEecCCCCCC--ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 34677889999988642 212222333 77999999999764 48999998653
No 61
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=97.17 E-value=0.0011 Score=60.94 Aligned_cols=51 Identities=37% Similarity=0.821 Sum_probs=38.6
Q ss_pred ccCCCCccccccccccCCCCCe-EecCCCCcccHhHHHHHHhCCC-------CCCccCC
Q 030003 130 AASEEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWNERSE-------SCPICDQ 180 (184)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~Wl~~~~-------tCPvCR~ 180 (184)
.......+|.||++.+....++ .-..|=|+||+.||.+|-.... .||-|+.
T Consensus 186 ~l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 186 QLSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred HHhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 4456788999999999765663 2234779999999999975421 6999983
No 62
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.16 E-value=0.00042 Score=41.60 Aligned_cols=44 Identities=27% Similarity=0.616 Sum_probs=23.6
Q ss_pred ccccccccCCCCC-eEecCCCCcccHhHHHHHHh-CCCCCCccCCc
Q 030003 138 CPICLEEYDTENP-KLITKCEHHFHLSCILEWNE-RSESCPICDQE 181 (184)
Q Consensus 138 C~ICle~~~~~~~-~~~~~C~H~Fh~~CI~~Wl~-~~~tCPvCR~~ 181 (184)
|++|.++++..+. ..--+||+.+|+.|....++ ....||-||++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 7999999954333 23346899999999999987 47799999986
No 63
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.01 E-value=0.00027 Score=61.90 Aligned_cols=52 Identities=27% Similarity=0.650 Sum_probs=41.8
Q ss_pred ccCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC-----CCCCCccCCcccC
Q 030003 130 AASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-----SESCPICDQESLI 184 (184)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-----~~tCPvCR~~l~~ 184 (184)
....++..|.+|-+.-. +. +.+.|.|.||.-||+++++. .-+||+|...+.|
T Consensus 531 ~enk~~~~C~lc~d~ae--d~-i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAE--DY-IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred ccccCceeecccCChhh--hh-HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 44467778999999874 44 89999999999999998763 4599999887653
No 64
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00093 Score=52.64 Aligned_cols=51 Identities=27% Similarity=0.610 Sum_probs=43.0
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC--------CCCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER--------SESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~--------~~tCPvCR~~l~ 183 (184)
++-...|..|-..+..++. +.+-|-|.||.+|+.+|--. -..||-|.++|+
T Consensus 47 sDY~pNC~LC~t~La~gdt-~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 47 SDYNPNCRLCNTPLASGDT-TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred cCCCCCCceeCCccccCcc-eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 3556789999999988888 88999999999999999754 237999999875
No 65
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.86 E-value=0.00058 Score=55.89 Aligned_cols=46 Identities=30% Similarity=0.565 Sum_probs=36.5
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhC-CCCCCccC-Cccc
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICD-QESL 183 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~tCPvCR-~~l~ 183 (184)
..|+.|-..+. +++...-|+|.||..||..-|.. ...||.|. +.++
T Consensus 275 LkCplc~~Llr--np~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl 322 (427)
T COG5222 275 LKCPLCHCLLR--NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL 322 (427)
T ss_pred ccCcchhhhhh--CcccCccccchHHHHHHhhhhhhccccCCCcccccch
Confidence 78999999986 78555568999999999987655 56899994 4443
No 66
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00059 Score=57.11 Aligned_cols=45 Identities=29% Similarity=0.676 Sum_probs=34.1
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
....+.|.||+++.. + .+.+||||.-| |+..-... .+||+||+.|
T Consensus 302 ~~~p~lcVVcl~e~~--~-~~fvpcGh~cc--ct~cs~~l-~~CPvCR~rI 346 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPK--S-AVFVPCGHVCC--CTLCSKHL-PQCPVCRQRI 346 (355)
T ss_pred cCCCCceEEecCCcc--c-eeeecCCcEEE--chHHHhhC-CCCchhHHHH
Confidence 345578999999985 4 69999999877 76554333 3499999865
No 67
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.76 E-value=0.00053 Score=47.80 Aligned_cols=35 Identities=26% Similarity=0.570 Sum_probs=28.7
Q ss_pred cCCCCccccccccccCCCCCeEecCCCCcccHhHHH
Q 030003 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCIL 166 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~ 166 (184)
...++..|+||-..+.. ....+.||||.||..|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 44567789999999964 455888999999999975
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0011 Score=56.35 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=38.5
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC--------CCCCCccCC
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER--------SESCPICDQ 180 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~--------~~tCPvCR~ 180 (184)
..-..|.||+++.........+||+|+||+.|++.++.. .-.||-+..
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 455789999999976577899999999999999999863 226876653
No 69
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.51 E-value=0.0023 Score=53.52 Aligned_cols=50 Identities=24% Similarity=0.551 Sum_probs=40.8
Q ss_pred ccCCCCccccccccccCCCCCeEecCCCCcccHhHHHHH--HhCCCCCCccCCcc
Q 030003 130 AASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW--NERSESCPICDQES 182 (184)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~W--l~~~~tCPvCR~~l 182 (184)
+..+++..|-||-+.+ .-..++||+|..|.-|..+. |...+.|++||.+.
T Consensus 56 dtDEen~~C~ICA~~~---TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 56 DTDEENMNCQICAGST---TYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccccceeEEecCCc---eEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3456778899999988 44589999999999998754 66788999999754
No 70
>PHA03096 p28-like protein; Provisional
Probab=96.41 E-value=0.0016 Score=53.68 Aligned_cols=45 Identities=29% Similarity=0.626 Sum_probs=32.5
Q ss_pred ccccccccccCCCC-----CeEecCCCCcccHhHHHHHHhCC---CCCCccCC
Q 030003 136 DTCPICLEEYDTEN-----PKLITKCEHHFHLSCILEWNERS---ESCPICDQ 180 (184)
Q Consensus 136 ~~C~ICle~~~~~~-----~~~~~~C~H~Fh~~CI~~Wl~~~---~tCPvCR~ 180 (184)
..|.||++...... --++..|.|.||..||..|...+ .+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 67999999875321 11556799999999999998653 35555544
No 71
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.0035 Score=50.08 Aligned_cols=50 Identities=14% Similarity=0.363 Sum_probs=42.3
Q ss_pred CCCccccccccccCCCCC-eEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENP-KLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~-~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
.....||||.+.+...-+ +++-+|||+|+.+|..+.+.....||+|.+++
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~pl 269 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPL 269 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcC
Confidence 367899999999974444 36668999999999999999999999998865
No 72
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.0012 Score=60.79 Aligned_cols=42 Identities=26% Similarity=0.719 Sum_probs=36.2
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCC
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~ 180 (184)
....|.+|--.++ -|.+.-.|||.||.+|+. .....||-|+-
T Consensus 839 q~skCs~C~~~Ld--lP~VhF~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLD--LPFVHFLCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccc--cceeeeecccHHHHHhhc---cCcccCCccch
Confidence 4468999988886 888999999999999987 55678999986
No 73
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=96.24 E-value=0.0027 Score=51.87 Aligned_cols=47 Identities=34% Similarity=0.642 Sum_probs=38.3
Q ss_pred CCccccccccccCCC-CCeEecCCCCcccHhHHHHHHhCCCCCCccCC
Q 030003 134 EEDTCPICLEEYDTE-NPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (184)
Q Consensus 134 ~~~~C~ICle~~~~~-~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~ 180 (184)
....||||.+.+... ..+..++|||..|..|+.+.....-+||+|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 344599999988543 34488999999999999988777789999987
No 74
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.22 E-value=0.0053 Score=49.99 Aligned_cols=50 Identities=24% Similarity=0.548 Sum_probs=40.1
Q ss_pred CCCCccccccccccCCCC-CeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 132 SEEEDTCPICLEEYDTEN-PKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~-~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
......|||...+|.... -+.+.+|||+|...+|.+.- ....||+|.+++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f 160 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPF 160 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCcc
Confidence 467789999999995433 34667999999999999973 456899998875
No 75
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0061 Score=50.56 Aligned_cols=50 Identities=22% Similarity=0.634 Sum_probs=42.4
Q ss_pred cCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
.......|+||+.... |+.++.--|-+||..||...+...+.||+=..+.
T Consensus 296 l~~~~~~CpvClk~r~--Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQ--NPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCCccccChhHHhccC--CCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 3456678999999887 8877778899999999999999999999866554
No 76
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.13 E-value=0.0036 Score=52.19 Aligned_cols=51 Identities=25% Similarity=0.681 Sum_probs=37.7
Q ss_pred cCCCCccccccccccCCCCCe-EecCCCCcccHhHHHHHHhC-CCCCCccCCc
Q 030003 131 ASEEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWNER-SESCPICDQE 181 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~Wl~~-~~tCPvCR~~ 181 (184)
++++++.||.|+|+++..+.- .--+||-..|+-|....-+. ...||-||+.
T Consensus 10 sedeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~ 62 (480)
T COG5175 10 SEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRK 62 (480)
T ss_pred cccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhh
Confidence 456777899999999765543 45679988888886655433 5689999974
No 77
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=95.99 E-value=0.002 Score=38.32 Aligned_cols=31 Identities=35% Similarity=0.769 Sum_probs=24.5
Q ss_pred EecCCC-CcccHhHHHHHHhCCCCCCccCCcc
Q 030003 152 LITKCE-HHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 152 ~~~~C~-H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
.+..|. |..|..|+...+.++..||+|.+++
T Consensus 14 ~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~L 45 (50)
T PF03854_consen 14 GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPL 45 (50)
T ss_dssp SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE-
T ss_pred CeeeecchhHHHHHHHHHhccccCCCcccCcC
Confidence 567786 9999999999999999999999875
No 78
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.94 E-value=0.0041 Score=38.28 Aligned_cols=44 Identities=25% Similarity=0.496 Sum_probs=32.2
Q ss_pred CccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
...|..|...- ....+++|||..+..|..- ++-+-||+|.+++.
T Consensus 7 ~~~~~~~~~~~---~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~ 50 (55)
T PF14447_consen 7 EQPCVFCGFVG---TKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFE 50 (55)
T ss_pred ceeEEEccccc---cccccccccceeeccccCh--hhccCCCCCCCccc
Confidence 34566665543 3448999999999999654 46678999988764
No 79
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.007 Score=46.14 Aligned_cols=54 Identities=22% Similarity=0.549 Sum_probs=37.8
Q ss_pred cCCCCccccccccccCCC----CCeEecCCCCcccHhHHHHHHhC-----C------CCCCccCCcccC
Q 030003 131 ASEEEDTCPICLEEYDTE----NPKLITKCEHHFHLSCILEWNER-----S------ESCPICDQESLI 184 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~----~~~~~~~C~H~Fh~~CI~~Wl~~-----~------~tCPvCR~~l~~ 184 (184)
..++...|.||+..--.+ ...-...||.-||.-|+..||.. + ..||.|.+++.+
T Consensus 161 kdd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 161 KDDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cchhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 335556788888654221 22244679999999999999973 1 379999998753
No 80
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.41 E-value=0.0079 Score=35.29 Aligned_cols=41 Identities=22% Similarity=0.553 Sum_probs=22.4
Q ss_pred ccccccccCCCCCeEecCCCCcccHhHHHHHHhCCC--CCCcc
Q 030003 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE--SCPIC 178 (184)
Q Consensus 138 C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~--tCPvC 178 (184)
|.+|.+....+..-....|+=.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667877776333222235888999999999998755 79987
No 81
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.26 E-value=0.007 Score=55.49 Aligned_cols=43 Identities=33% Similarity=0.820 Sum_probs=36.6
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCC--CCCccCCcc
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE--SCPICDQES 182 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~--tCPvCR~~l 182 (184)
..|.||++ . +..+.+.|+|.||..|+..-++.+. .||+||..+
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL 499 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence 78999999 3 6669999999999999999887643 699998754
No 82
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.0095 Score=47.89 Aligned_cols=51 Identities=31% Similarity=0.722 Sum_probs=36.8
Q ss_pred cCCCCccccccccccCCCCCe--EecCCC-----CcccHhHHHHHHhCCC--------CCCccCCcc
Q 030003 131 ASEEEDTCPICLEEYDTENPK--LITKCE-----HHFHLSCILEWNERSE--------SCPICDQES 182 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~--~~~~C~-----H~Fh~~CI~~Wl~~~~--------tCPvCR~~l 182 (184)
..+.+..|=||+..=++ +.. -+-||. |..|..|+..|+..+. +||.|+.+-
T Consensus 16 ~~e~eR~CWiCF~TdeD-n~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 16 NQELERCCWICFATDED-NRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccccceeEEEEeccCcc-cchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 34667789999976532 222 345773 9999999999997533 799998764
No 83
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=0.0085 Score=55.54 Aligned_cols=48 Identities=27% Similarity=0.509 Sum_probs=36.6
Q ss_pred hhhhcccc-ccCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHh
Q 030003 122 EVSQLNVF-AASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE 170 (184)
Q Consensus 122 ~~~~~~~~-~~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~ 170 (184)
++.++... ...+.++.|.||...+.. .+-.+-+|||.||+.||.+-..
T Consensus 803 ~~~~l~~ry~v~ep~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 803 EISKLRQRYRVLEPQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred HHHHhhcceEEecCccchHHhcchhhc-CcceeeeccchHHHHHHHHHHH
Confidence 34444433 556788899999998853 4668899999999999987653
No 84
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=94.79 E-value=0.02 Score=52.85 Aligned_cols=51 Identities=35% Similarity=0.805 Sum_probs=40.8
Q ss_pred CCCccccccccccCCCCCeEecCCC-----CcccHhHHHHHHhCCC--CCCccCCcccC
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCE-----HHFHLSCILEWNERSE--SCPICDQESLI 184 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~-----H~Fh~~CI~~Wl~~~~--tCPvCR~~l~~ 184 (184)
++...|.||..+-..++| ..-||. ...|++|+.+|+.-+. .|-+|..++-|
T Consensus 10 ~d~~~CRICr~e~~~d~p-LfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDP-LFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred ccchhceeecCCCCCCCc-CcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 455789999999877788 566664 5789999999998654 79999987643
No 85
>PHA02862 5L protein; Provisional
Probab=94.57 E-value=0.02 Score=42.16 Aligned_cols=28 Identities=18% Similarity=0.539 Sum_probs=22.3
Q ss_pred CCCcccHhHHHHHHhC--CCCCCccCCccc
Q 030003 156 CEHHFHLSCILEWNER--SESCPICDQESL 183 (184)
Q Consensus 156 C~H~Fh~~CI~~Wl~~--~~tCPvCR~~l~ 183 (184)
-....|+.|+.+|++. +.+|++|+.+..
T Consensus 24 S~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 24 EYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred cchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 3446899999999976 458999998754
No 86
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.02 Score=47.25 Aligned_cols=44 Identities=25% Similarity=0.574 Sum_probs=30.3
Q ss_pred CccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
.-.|--|--.+. .--++.+|.|+||++|.. ++.-+.||.|...|
T Consensus 90 VHfCd~Cd~PI~--IYGRmIPCkHvFCl~CAr--~~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIA--IYGRMIPCKHVFCLECAR--SDSDKICPLCDDRV 133 (389)
T ss_pred eEeecccCCcce--eeecccccchhhhhhhhh--cCccccCcCcccHH
Confidence 445666654442 223789999999999953 34466899997654
No 87
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.015 Score=43.63 Aligned_cols=30 Identities=23% Similarity=0.595 Sum_probs=26.9
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccH
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHL 162 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~ 162 (184)
.+.-+|.||||++..++.+..|||--+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 456689999999999999999999998885
No 88
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.16 E-value=0.012 Score=56.64 Aligned_cols=45 Identities=33% Similarity=0.628 Sum_probs=39.8
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCC
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~ 180 (184)
....|.||++... +...+..|||.+|..|+..|+..+..||+|+.
T Consensus 1152 ~~~~c~ic~dil~--~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILR--NQGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHH--hcCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 4458999999996 56688999999999999999999999999963
No 89
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=93.81 E-value=0.035 Score=45.89 Aligned_cols=49 Identities=33% Similarity=0.657 Sum_probs=37.6
Q ss_pred CCccccccccccCCCCC-eEecCCC-----CcccHhHHHHHHh--CCCCCCccCCcc
Q 030003 134 EEDTCPICLEEYDTENP-KLITKCE-----HHFHLSCILEWNE--RSESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~-~~~~~C~-----H~Fh~~CI~~Wl~--~~~tCPvCR~~l 182 (184)
++..|.||.++....+. ....+|. +..|..|+..|+. .+..|.+|....
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~ 133 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF 133 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence 35689999998754331 3677875 7889999999998 556899998754
No 90
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.0034 Score=53.15 Aligned_cols=49 Identities=20% Similarity=0.451 Sum_probs=40.5
Q ss_pred CCccccccccccCCC-CCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 134 EEDTCPICLEEYDTE-NPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~~-~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
-...|+||.+.|... +...-+-|||.+|..||.+||.....||.||+.+
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel 244 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRREL 244 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhh
Confidence 345799999988533 4446678999999999999999988999999875
No 91
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.45 E-value=0.087 Score=31.85 Aligned_cols=43 Identities=23% Similarity=0.595 Sum_probs=23.0
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhC---CC--CCCccCCc
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER---SE--SCPICDQE 181 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~---~~--tCPvCR~~ 181 (184)
..|+|-...+. .|++-..|.|.-|.+ +..||+. .. .||+|.++
T Consensus 3 L~CPls~~~i~--~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIR--IPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-S--SEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEE--eCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 46999999887 898999999986544 2344432 22 69999874
No 92
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.71 E-value=0.05 Score=46.80 Aligned_cols=39 Identities=28% Similarity=0.632 Sum_probs=30.0
Q ss_pred CCccccccc-cccCCCCCeEecCCCCcccHhHHHHHHhCC
Q 030003 134 EEDTCPICL-EEYDTENPKLITKCEHHFHLSCILEWNERS 172 (184)
Q Consensus 134 ~~~~C~ICl-e~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~ 172 (184)
....|.||+ +....+....+..|+|.||..|.++.++.+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 456899999 444443444678999999999999998854
No 93
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.64 E-value=0.16 Score=43.15 Aligned_cols=50 Identities=26% Similarity=0.674 Sum_probs=32.9
Q ss_pred cCCCCccccccccccCCCCCeEec----------------CCC-----CcccHhHHHHHHhC-------------CCCCC
Q 030003 131 ASEEEDTCPICLEEYDTENPKLIT----------------KCE-----HHFHLSCILEWNER-------------SESCP 176 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~----------------~C~-----H~Fh~~CI~~Wl~~-------------~~tCP 176 (184)
..++.+.|--|+..-. +-++.- +|. -..|.+|+-+||-. +-.||
T Consensus 267 ~~~e~e~CigC~~~~~--~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CP 344 (358)
T PF10272_consen 267 SGQELEPCIGCMQAQP--NVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCP 344 (358)
T ss_pred CccccCCccccccCCC--CcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCC
Confidence 3467778999987542 222222 232 35688999999852 23899
Q ss_pred ccCCcc
Q 030003 177 ICDQES 182 (184)
Q Consensus 177 vCR~~l 182 (184)
+||+.+
T Consensus 345 tCRa~F 350 (358)
T PF10272_consen 345 TCRAKF 350 (358)
T ss_pred CCcccc
Confidence 999976
No 94
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.58 E-value=0.098 Score=43.47 Aligned_cols=43 Identities=30% Similarity=0.675 Sum_probs=33.6
Q ss_pred CCCccccccccccCCCCCeEecCC--CCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKC--EHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C--~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
.+-..||||.+.+. .| +..| ||.-|..|=. +.++.||.||.+|
T Consensus 46 ~~lleCPvC~~~l~--~P--i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~ 90 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLS--PP--IFQCDNGHLACSSCRT---KVSNKCPTCRLPI 90 (299)
T ss_pred hhhccCchhhccCc--cc--ceecCCCcEehhhhhh---hhcccCCcccccc
Confidence 45568999999995 44 4556 7999999965 4577899999876
No 95
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=0.18 Score=43.09 Aligned_cols=48 Identities=23% Similarity=0.508 Sum_probs=40.8
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCC---CCCCccCC
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS---ESCPICDQ 180 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~---~tCPvCR~ 180 (184)
.....|||=.+.-..+||...+.|||+....=|.+..+.. ..||-|=.
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 4567899999999889999999999999999999987653 47999843
No 96
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.43 E-value=0.049 Score=49.64 Aligned_cols=47 Identities=32% Similarity=0.773 Sum_probs=38.1
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC---CCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER---SESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~---~~tCPvCR~~l 182 (184)
.....|+||+..+. .+ +.++|.|.|+..|+..-|.. ...||+|+..+
T Consensus 19 ~k~lEc~ic~~~~~--~p-~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 19 QKILECPICLEHVK--EP-SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhhccCCceeEEee--cc-chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 45678999999996 55 89999999999998876654 45899998543
No 97
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.70 E-value=0.15 Score=46.93 Aligned_cols=28 Identities=32% Similarity=0.816 Sum_probs=24.4
Q ss_pred CeEecCCCCcccHhHHHHHHhCCCCCCc
Q 030003 150 PKLITKCEHHFHLSCILEWNERSESCPI 177 (184)
Q Consensus 150 ~~~~~~C~H~Fh~~CI~~Wl~~~~tCPv 177 (184)
..+...|+|..|.+|..+|++....||.
T Consensus 1042 s~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1042 SNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred chhhccccccccHHHHHHHHhcCCcCCC
Confidence 3356789999999999999999999984
No 98
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.52 E-value=0.27 Score=35.82 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=35.7
Q ss_pred CCccccccccccCCCCCeEec---CCCCcccHhHHHHHHhC---CCCCCccCCcc
Q 030003 134 EEDTCPICLEEYDTENPKLIT---KCEHHFHLSCILEWNER---SESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~---~C~H~Fh~~CI~~Wl~~---~~tCPvCR~~l 182 (184)
.-.+|-||.|.-. +...+- -||-..|..|....++. ...||+|+..+
T Consensus 79 ~lYeCnIC~etS~--ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSF 131 (140)
T PF05290_consen 79 KLYECNICKETSA--EERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSF 131 (140)
T ss_pred CceeccCcccccc--hhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccc
Confidence 6688999999885 332232 39999999998887775 44899998764
No 99
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.23 E-value=0.18 Score=39.71 Aligned_cols=38 Identities=29% Similarity=0.586 Sum_probs=29.2
Q ss_pred ccccccccCCCCCeEecCCCC-cccHhHHHHHHhCCCCCCccCCcc
Q 030003 138 CPICLEEYDTENPKLITKCEH-HFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 138 C~ICle~~~~~~~~~~~~C~H-~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
|-+|-+.- ..++++||.| .+|..|-.. -.+||+|+...
T Consensus 161 Cr~C~~~~---~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGERE---ATVLLLPCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcCC---ceEEeecccceEeccccccc----CccCCCCcChh
Confidence 99998876 5689999997 678888543 34699998653
No 100
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.71 E-value=0.38 Score=39.66 Aligned_cols=28 Identities=25% Similarity=0.567 Sum_probs=21.4
Q ss_pred CCCcccHhHHHHHHh-------------CCCCCCccCCccc
Q 030003 156 CEHHFHLSCILEWNE-------------RSESCPICDQESL 183 (184)
Q Consensus 156 C~H~Fh~~CI~~Wl~-------------~~~tCPvCR~~l~ 183 (184)
|.-..|.+|+.+|+- .+-+||+||+.+-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 446778899998874 3458999999763
No 101
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.35 E-value=0.32 Score=44.14 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=29.4
Q ss_pred CCccccccccccCC--CCCeEecCCCCcccHhHHHHHHhCC
Q 030003 134 EEDTCPICLEEYDT--ENPKLITKCEHHFHLSCILEWNERS 172 (184)
Q Consensus 134 ~~~~C~ICle~~~~--~~~~~~~~C~H~Fh~~CI~~Wl~~~ 172 (184)
+-..|+||+.+|.. -.+ +.+.|||+.|..|+..-..++
T Consensus 10 ~~l~c~ic~n~f~~~~~~P-vsl~cghtic~~c~~~lyn~s 49 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEP-VSLQCGHTICGHCVQLLYNAS 49 (861)
T ss_pred HHhhchHHHHHHHHHhcCc-ccccccchHHHHHHHhHhhcc
Confidence 44579999998843 234 788999999999998876553
No 102
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=85.88 E-value=1.1 Score=27.48 Aligned_cols=44 Identities=20% Similarity=0.618 Sum_probs=30.6
Q ss_pred CCccccccccccCCC-CCeEecCCCCcccHhHHHHHHhCCCCCCc--cCCc
Q 030003 134 EEDTCPICLEEYDTE-NPKLITKCEHHFHLSCILEWNERSESCPI--CDQE 181 (184)
Q Consensus 134 ~~~~C~ICle~~~~~-~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPv--CR~~ 181 (184)
....|.+|-+.|..+ +-++-..||--+|+.|.. +...|-+ |...
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~----~~g~C~~~~c~~~ 50 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE----KAGGCINYSCGTG 50 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHh----hCCceEeccCCCC
Confidence 456799999999644 444556799999999943 3445544 5443
No 103
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.41 E-value=0.45 Score=42.81 Aligned_cols=46 Identities=35% Similarity=0.782 Sum_probs=37.7
Q ss_pred cCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
..+..+.|.||+++. ....++|. |.-|+.+|+..+..||+|++.+.
T Consensus 475 l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~ 520 (543)
T KOG0802|consen 475 LREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMK 520 (543)
T ss_pred hhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhh
Confidence 345678899999988 23667777 89999999999999999987654
No 104
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.40 E-value=0.76 Score=37.06 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=32.5
Q ss_pred ccCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHh
Q 030003 130 AASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE 170 (184)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~ 170 (184)
++..+-+-|+.||..+. +| ++++=||+|+.+||.+++-
T Consensus 38 DsiK~FdcCsLtLqPc~--dP-vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCR--DP-VITPDGYLFDREAILEYIL 75 (303)
T ss_pred cccCCcceeeeeccccc--CC-ccCCCCeeeeHHHHHHHHH
Confidence 34466778999999997 77 8899999999999999874
No 105
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=85.16 E-value=0.52 Score=28.65 Aligned_cols=42 Identities=26% Similarity=0.640 Sum_probs=21.7
Q ss_pred ccccccccCCC-------CCeEecCCCCcccHhHHHHHHhCCCCCCccC
Q 030003 138 CPICLEEYDTE-------NPKLITKCEHHFHLSCILEWNERSESCPICD 179 (184)
Q Consensus 138 C~ICle~~~~~-------~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR 179 (184)
|--|+..|... ....-..|+++||.+|=.-.=+.-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 44566666432 1224467999999999544445567899884
No 106
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.14 E-value=0.87 Score=42.40 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=34.6
Q ss_pred CCCccccccccccCC-CCCeEe---cCCCCcccHhHHHHHHhC------CCCCCccCC
Q 030003 133 EEEDTCPICLEEYDT-ENPKLI---TKCEHHFHLSCILEWNER------SESCPICDQ 180 (184)
Q Consensus 133 ~~~~~C~ICle~~~~-~~~~~~---~~C~H~Fh~~CI~~Wl~~------~~tCPvCR~ 180 (184)
.+.+.|.||..++.. .+..-. ..|+|.||..||..|..+ .-.|++|..
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 466789999988864 122233 349999999999999875 236788854
No 107
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=82.99 E-value=0.66 Score=36.48 Aligned_cols=44 Identities=23% Similarity=0.571 Sum_probs=37.3
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccC
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICD 179 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR 179 (184)
.-..|-+|....- ..+..-.|+-.+|..|+.+.+++...||.|.
T Consensus 180 nlk~Cn~Ch~LvI--qg~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 180 NLKNCNLCHCLVI--QGIRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHHhHhHHHhh--eeeccCcccchhhhHHHHHHhcccCcCCchh
Confidence 4568999998875 4446678889999999999999999999994
No 108
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.48 E-value=0.49 Score=43.86 Aligned_cols=45 Identities=24% Similarity=0.592 Sum_probs=33.7
Q ss_pred CCCccccccccccCC-C---CCeEecCCCCcccHhHHHHHHhCCCCCCcc
Q 030003 133 EEEDTCPICLEEYDT-E---NPKLITKCEHHFHLSCILEWNERSESCPIC 178 (184)
Q Consensus 133 ~~~~~C~ICle~~~~-~---~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvC 178 (184)
..+..|.-|++.... + +.+++..|||.||..|+..-+.++. |-.|
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 344589999988743 2 4568899999999999988777655 5444
No 109
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=81.41 E-value=0.1 Score=33.81 Aligned_cols=40 Identities=28% Similarity=0.604 Sum_probs=22.2
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
..||+|..++...+ +|.+|..|-.. ++....||-|.++|-
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHHH
Confidence 46999988874222 77788888654 455567999988764
No 110
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.08 E-value=1.1 Score=39.40 Aligned_cols=37 Identities=27% Similarity=0.568 Sum_probs=31.3
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER 171 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~ 171 (184)
.....|.||.+.+.. ..+.+.|||.||..|....+.+
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 456789999999963 5688899999999999988875
No 111
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=80.46 E-value=1.3 Score=36.99 Aligned_cols=47 Identities=26% Similarity=0.518 Sum_probs=38.3
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC---CCCCCccC
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER---SESCPICD 179 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~---~~tCPvCR 179 (184)
..-..||+=.+.-..+||.+++.|||+.-..-+...-++ +..||.|-
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 456789999888888899999999999998888776543 44799984
No 113
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=79.71 E-value=1.6 Score=36.53 Aligned_cols=47 Identities=28% Similarity=0.640 Sum_probs=38.4
Q ss_pred ccccccccccCC-CCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 136 DTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 136 ~~C~ICle~~~~-~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
..|+||.+.... ....+-.+|++..|+.|+..-.....+||.||+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcc
Confidence 679999998843 34445667899999999999988999999999764
No 114
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=79.16 E-value=1.6 Score=34.11 Aligned_cols=42 Identities=31% Similarity=0.760 Sum_probs=29.0
Q ss_pred CCccccccccc-----cCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCC
Q 030003 134 EEDTCPICLEE-----YDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (184)
Q Consensus 134 ~~~~C~ICle~-----~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~ 180 (184)
....|-||-+. |+.+..+.-..|+-.||..|.. +..||-|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 45678888742 2223444556899999999965 267999943
No 115
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=78.14 E-value=0.69 Score=39.70 Aligned_cols=46 Identities=26% Similarity=0.668 Sum_probs=0.0
Q ss_pred CCCccccccccccC-----------CCCCeEecCCCCcccHhHHHHHHhC------CCCCCccCCc
Q 030003 133 EEEDTCPICLEEYD-----------TENPKLITKCEHHFHLSCILEWNER------SESCPICDQE 181 (184)
Q Consensus 133 ~~~~~C~ICle~~~-----------~~~~~~~~~C~H~Fh~~CI~~Wl~~------~~tCPvCR~~ 181 (184)
.....||+=|..+. ...|-+-+.|||++. ...|-.+ ..+||+||+.
T Consensus 275 a~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG---~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 275 AGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHG---YHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ------------------------------------------------------------------
T ss_pred hcCCCCCcCCCccccccccccccccccCceeeccccceee---ecccccccccccccccCCCcccc
Confidence 44567887765542 224557799999877 3578642 4589999974
No 116
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.95 E-value=2.1 Score=30.36 Aligned_cols=45 Identities=20% Similarity=0.449 Sum_probs=34.4
Q ss_pred ccccccccccCCC-----------CCeEecCCCCcccHhHHHHHHhCCCCCCccCC
Q 030003 136 DTCPICLEEYDTE-----------NPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (184)
Q Consensus 136 ~~C~ICle~~~~~-----------~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~ 180 (184)
..|--|+..|... ....-..|+++||.+|=.-|-+.-..||-|-.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 4599998888421 11235789999999998888888889999953
No 117
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.95 E-value=0.81 Score=37.87 Aligned_cols=48 Identities=27% Similarity=0.583 Sum_probs=39.2
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
...+.|-||...+. -+.....|+|.|+..|...|....+.||.|+...
T Consensus 103 ~~~~~~~~~~g~l~--vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~ 150 (324)
T KOG0824|consen 103 QDHDICYICYGKLT--VPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKI 150 (324)
T ss_pred CCccceeeeeeeEE--ecccccCceeeeeecCCchhhhhhhccchhhcCc
Confidence 56778999998885 3334455999999999999999999999998743
No 118
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=75.06 E-value=4.4 Score=25.02 Aligned_cols=46 Identities=22% Similarity=0.528 Sum_probs=31.8
Q ss_pred CccccccccccCCCCCeEecCCC--CcccHhHHHHHHhCCCCCCccCCccc
Q 030003 135 EDTCPICLEEYDTENPKLITKCE--HHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~--H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
...|-.|-.++..+.. -..-|. -+||..|....| ...||.|...|+
T Consensus 5 rpnCE~C~~dLp~~s~-~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 5 RPNCECCDKDLPPDSP-EAYICSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CCCccccCCCCCCCCC-cceEEeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 3457777777754442 223344 489999999887 568999988765
No 119
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=74.91 E-value=1.4 Score=26.10 Aligned_cols=43 Identities=23% Similarity=0.582 Sum_probs=27.6
Q ss_pred cccccccccCCCCCeEecCCCCcccHhHHHHHHh------CCCCCCccC
Q 030003 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNE------RSESCPICD 179 (184)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~------~~~tCPvCR 179 (184)
.|.||......+.-+.--.|+..||..|+..=.. ..-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4889988444333444457899999999864332 123677764
No 120
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=73.30 E-value=1.3 Score=40.06 Aligned_cols=43 Identities=28% Similarity=0.780 Sum_probs=26.4
Q ss_pred CCccccccccc-----cCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccC
Q 030003 134 EEDTCPICLEE-----YDTENPKLITKCEHHFHLSCILEWNERSESCPICD 179 (184)
Q Consensus 134 ~~~~C~ICle~-----~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR 179 (184)
....|.||... |...+...-..|++.||..|... .+..||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 44566677421 22233345567999999999543 344499993
No 121
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.16 E-value=2.1 Score=36.87 Aligned_cols=45 Identities=24% Similarity=0.552 Sum_probs=31.7
Q ss_pred CCCccccccccccCC---CCCeEecCCCCcccHhHHHHHHhCCCCCCcc
Q 030003 133 EEEDTCPICLEEYDT---ENPKLITKCEHHFHLSCILEWNERSESCPIC 178 (184)
Q Consensus 133 ~~~~~C~ICle~~~~---~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvC 178 (184)
..-..|++|.-.+.- -+.+.-. |||.||..|...|......|..|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 345679988876632 2333334 99999999999998877766544
No 122
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=71.68 E-value=2.9 Score=22.63 Aligned_cols=38 Identities=16% Similarity=0.415 Sum_probs=25.0
Q ss_pred cccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.|..|-+.+..... .+..=+..||..|. .|..|++.|.
T Consensus 1 ~C~~C~~~i~~~~~-~~~~~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGEL-VLRALGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcE-EEEeCCccccccCC--------CCcccCCcCc
Confidence 37788887753322 33334788998885 6888887663
No 123
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=71.58 E-value=3.5 Score=34.65 Aligned_cols=47 Identities=23% Similarity=0.483 Sum_probs=35.9
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCC
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~ 180 (184)
....|-.|.++........--.|.|+||.+|=.-.-+.-..||-|..
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 44459999888765566677889999999996555555668999964
No 124
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=71.45 E-value=2.5 Score=28.81 Aligned_cols=37 Identities=22% Similarity=0.705 Sum_probs=27.7
Q ss_pred CccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
...|-||-.... .+ ||+||..|-+ ....|.||.+.|+
T Consensus 44 ~~~C~~CK~~v~--q~------g~~YCq~CAY----kkGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVH--QP------GAKYCQTCAY----KKGICAMCGKKIL 80 (90)
T ss_pred Cccccccccccc--cC------CCccChhhhc----ccCcccccCCeec
Confidence 457999977664 22 6889999964 3679999988764
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=71.12 E-value=3.2 Score=38.56 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=30.0
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCc
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPI 177 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPv 177 (184)
..|.+|-..+. +--+-..-|||.-|.+|++.|+....-||.
T Consensus 780 ~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceee-eeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 46777765552 122233469999999999999999888876
No 126
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=70.09 E-value=2.8 Score=26.76 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=8.8
Q ss_pred cccHhHHHHHHh
Q 030003 159 HFHLSCILEWNE 170 (184)
Q Consensus 159 ~Fh~~CI~~Wl~ 170 (184)
-||+.|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 127
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=68.84 E-value=3.1 Score=21.49 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=12.0
Q ss_pred cccccccccCCCCCeEecCCCCcc
Q 030003 137 TCPICLEEYDTENPKLITKCEHHF 160 (184)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~F 160 (184)
.||-|-..+..... .-.-|||.|
T Consensus 2 ~CP~C~~~V~~~~~-~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAK-FCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcC-cCCCCCCCC
Confidence 46777666632121 333467766
No 128
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.69 E-value=2.7 Score=34.64 Aligned_cols=37 Identities=22% Similarity=0.569 Sum_probs=28.9
Q ss_pred CCCccccccccccCCCCCeEecCC----CCcccHhHHHHHHhCC
Q 030003 133 EEEDTCPICLEEYDTENPKLITKC----EHHFHLSCILEWNERS 172 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C----~H~Fh~~CI~~Wl~~~ 172 (184)
.....|.+|.|.++ +. -...| .|.||+-|-.+-++++
T Consensus 266 ~apLcCTLC~ERLE--DT-HFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 266 SAPLCCTLCHERLE--DT-HFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CCceeehhhhhhhc--cC-ceeecCCCcccceecccCHHHHHhh
Confidence 34578999999996 33 44455 6999999999998864
No 129
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=62.44 E-value=2.6 Score=25.43 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=4.4
Q ss_pred cccccccccc
Q 030003 136 DTCPICLEEY 145 (184)
Q Consensus 136 ~~C~ICle~~ 145 (184)
..|.+|-..+
T Consensus 27 f~C~~C~~~l 36 (58)
T PF00412_consen 27 FKCSKCGKPL 36 (58)
T ss_dssp SBETTTTCBT
T ss_pred cccCCCCCcc
Confidence 3444444444
No 130
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.04 E-value=5.8 Score=25.83 Aligned_cols=44 Identities=23% Similarity=0.507 Sum_probs=28.2
Q ss_pred cccccccccCCCCCeEecCC--CCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 137 TCPICLEEYDTENPKLITKC--EHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C--~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.|--|-.++-++.. -.+-| .|+||..|...-| ...||.|...++
T Consensus 7 nCECCDrDLpp~s~-dA~ICtfEcTFCadCae~~l--~g~CPnCGGelv 52 (84)
T COG3813 7 NCECCDRDLPPDST-DARICTFECTFCADCAENRL--HGLCPNCGGELV 52 (84)
T ss_pred CCcccCCCCCCCCC-ceeEEEEeeehhHhHHHHhh--cCcCCCCCchhh
Confidence 45556555533222 22334 4899999988665 558999987764
No 131
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=60.54 E-value=4.2 Score=25.69 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=19.2
Q ss_pred CCCccccccccccCCCCCe-EecCCCCcccHhHHHHHH
Q 030003 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWN 169 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~Wl 169 (184)
.+...|.+|...|..-... ---.||++||..|....+
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 4567899999999643332 335799999999986544
No 132
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=60.21 E-value=5.7 Score=32.46 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=33.2
Q ss_pred ccccccccccCCCCCeE----ecCCCCcccHhHHHHHHh-C--------CCCCCccCCcc
Q 030003 136 DTCPICLEEYDTENPKL----ITKCEHHFHLSCILEWNE-R--------SESCPICDQES 182 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~----~~~C~H~Fh~~CI~~Wl~-~--------~~tCPvCR~~l 182 (184)
..|-||.+++...+..+ ...|+-++|..|+..-+. . ...||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 58999999994333322 234888999999998433 2 34899999854
No 133
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=58.35 E-value=3.6 Score=24.94 Aligned_cols=9 Identities=33% Similarity=1.202 Sum_probs=4.6
Q ss_pred CCCccCCcc
Q 030003 174 SCPICDQES 182 (184)
Q Consensus 174 tCPvCR~~l 182 (184)
.||+|.++|
T Consensus 22 ~CPlC~r~l 30 (54)
T PF04423_consen 22 CCPLCGRPL 30 (54)
T ss_dssp E-TTT--EE
T ss_pred cCCCCCCCC
Confidence 788888765
No 135
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=57.74 E-value=5.4 Score=24.96 Aligned_cols=18 Identities=22% Similarity=0.759 Sum_probs=13.0
Q ss_pred HHHHhC------CCCCCccCCccc
Q 030003 166 LEWNER------SESCPICDQESL 183 (184)
Q Consensus 166 ~~Wl~~------~~tCPvCR~~l~ 183 (184)
..||.. ...||+|..+++
T Consensus 27 ~gWmR~nFs~~~~p~CPlC~s~M~ 50 (59)
T PF14169_consen 27 NGWMRDNFSFEEEPVCPLCKSPMV 50 (59)
T ss_pred CcccccccccCCCccCCCcCCccc
Confidence 467764 358999998764
No 136
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=57.43 E-value=5.8 Score=32.20 Aligned_cols=44 Identities=23% Similarity=0.402 Sum_probs=35.8
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCC--CCCccC
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE--SCPICD 179 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~--tCPvCR 179 (184)
-+..|||=+..+. +|++-.+|||+|-+.=|...+.... .||+=.
T Consensus 175 fs~rdPis~~~I~--nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 175 FSNRDPISKKPIV--NPVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred hcccCchhhhhhh--chhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 4567998888877 9999999999999999999986633 588743
No 137
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=56.94 E-value=7.4 Score=27.64 Aligned_cols=46 Identities=17% Similarity=0.569 Sum_probs=29.4
Q ss_pred CCccccccccccCC--CCCeEecCCCCcccHhHHHHHHhCCC--CCCccCC
Q 030003 134 EEDTCPICLEEYDT--ENPKLITKCEHHFHLSCILEWNERSE--SCPICDQ 180 (184)
Q Consensus 134 ~~~~C~ICle~~~~--~~~~~~~~C~H~Fh~~CI~~Wl~~~~--tCPvCR~ 180 (184)
.+..|.+|...|.. +....-..|.|.+|..|-.. ..... .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 56789999998732 34567788999999999544 11111 4777754
No 138
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=56.80 E-value=9.5 Score=22.91 Aligned_cols=36 Identities=14% Similarity=0.318 Sum_probs=26.1
Q ss_pred CccccccccccCCCCCe-EecCCCCcccHhHHHHHHh
Q 030003 135 EDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWNE 170 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~Wl~ 170 (184)
...|.+|-..|...... .-..||++||..|......
T Consensus 2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 35699999888543322 4457999999999876654
No 139
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=54.93 E-value=7.3 Score=31.29 Aligned_cols=42 Identities=29% Similarity=0.444 Sum_probs=34.3
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCC--CCCc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE--SCPI 177 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~--tCPv 177 (184)
-+..|+|=+..+. .+++-.+|+|.|-.+=|...++.-. .||.
T Consensus 188 ~~nrCpitl~p~~--~pils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 188 LSNRCPITLNPDF--YPILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred hcccCCcccCcch--hHHHHhhhcccccHHHHHHHhcCCceeecch
Confidence 4568999988886 8888899999999999999998543 4663
No 140
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=54.75 E-value=6.5 Score=21.84 Aligned_cols=26 Identities=35% Similarity=0.791 Sum_probs=15.5
Q ss_pred ccccccccccCCCCC--------eEecCCCCccc
Q 030003 136 DTCPICLEEYDTENP--------KLITKCEHHFH 161 (184)
Q Consensus 136 ~~C~ICle~~~~~~~--------~~~~~C~H~Fh 161 (184)
..|+=|...|...+. +.-..|+|.|+
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 358888887754221 23346777774
No 141
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.64 E-value=13 Score=30.24 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=34.5
Q ss_pred CCCccccccccccCCC-CCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTE-NPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~-~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
.....|||=--++... .-..+..|||+|-..=+++.- ..+|++|.+..
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y 157 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAY 157 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcc
Confidence 4567899877666322 223677999999988877753 67999998753
No 142
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=51.62 E-value=4.2 Score=24.94 Aligned_cols=21 Identities=24% Similarity=0.760 Sum_probs=16.1
Q ss_pred CCeEec-CCCCcccHhHHHHHH
Q 030003 149 NPKLIT-KCEHHFHLSCILEWN 169 (184)
Q Consensus 149 ~~~~~~-~C~H~Fh~~CI~~Wl 169 (184)
...+.- .|+|.||..|...|-
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred CCeeECCCCCCeECCCCCCcCC
Confidence 344454 799999999998883
No 143
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=48.27 E-value=7 Score=23.58 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=8.4
Q ss_pred CccccccccccC
Q 030003 135 EDTCPICLEEYD 146 (184)
Q Consensus 135 ~~~C~ICle~~~ 146 (184)
...||.|-+.++
T Consensus 2 ~f~CP~C~~~~~ 13 (54)
T PF05605_consen 2 SFTCPYCGKGFS 13 (54)
T ss_pred CcCCCCCCCccC
Confidence 457888888653
No 144
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.13 E-value=3.4 Score=30.30 Aligned_cols=51 Identities=22% Similarity=0.513 Sum_probs=28.5
Q ss_pred cCCCCccccccccc-cCCCCCeEecCCCCcccHhHHHHHHhCCC----CCCccCCc
Q 030003 131 ASEEEDTCPICLEE-YDTENPKLITKCEHHFHLSCILEWNERSE----SCPICDQE 181 (184)
Q Consensus 131 ~~~~~~~C~ICle~-~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~----tCPvCR~~ 181 (184)
...++..|-||+.. |.++-.-..--|.-.||..|--+.-.+++ .|-+|++.
T Consensus 61 Gv~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred ccCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 34678899999854 33222212233444566666655443433 57788764
No 145
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=45.77 E-value=3.4 Score=20.63 Aligned_cols=7 Identities=43% Similarity=1.194 Sum_probs=3.1
Q ss_pred CCCccCC
Q 030003 174 SCPICDQ 180 (184)
Q Consensus 174 tCPvCR~ 180 (184)
.||.|..
T Consensus 15 fC~~CG~ 21 (23)
T PF13240_consen 15 FCPNCGT 21 (23)
T ss_pred chhhhCC
Confidence 3444443
No 146
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=44.36 E-value=11 Score=19.27 Aligned_cols=9 Identities=44% Similarity=1.239 Sum_probs=5.7
Q ss_pred CCCccCCcc
Q 030003 174 SCPICDQES 182 (184)
Q Consensus 174 tCPvCR~~l 182 (184)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 577776553
No 147
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=44.03 E-value=17 Score=19.01 Aligned_cols=29 Identities=21% Similarity=0.463 Sum_probs=10.5
Q ss_pred cccccccccCCCCCeEecCCCCcccHhHH
Q 030003 137 TCPICLEEYDTENPKLITKCEHHFHLSCI 165 (184)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI 165 (184)
.|.+|.+....+..-.-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 57888887753223355778888898885
No 148
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=43.40 E-value=12 Score=33.85 Aligned_cols=35 Identities=31% Similarity=0.759 Sum_probs=25.1
Q ss_pred CCCccccccccccCC----C-------CCeEecCCCCcccHhHHHHH
Q 030003 133 EEEDTCPICLEEYDT----E-------NPKLITKCEHHFHLSCILEW 168 (184)
Q Consensus 133 ~~~~~C~ICle~~~~----~-------~~~~~~~C~H~Fh~~CI~~W 168 (184)
+....|+||.|.|.. + +. +-+.=|-+||..|+.+-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kda-V~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDA-VYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecce-eeeccCceeeccccchH
Confidence 677889999999953 1 22 22236889999998764
No 149
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=43.26 E-value=31 Score=24.10 Aligned_cols=27 Identities=22% Similarity=0.592 Sum_probs=20.5
Q ss_pred cCC---CCcccHhHHHHHHhC---------CCCCCccCC
Q 030003 154 TKC---EHHFHLSCILEWNER---------SESCPICDQ 180 (184)
Q Consensus 154 ~~C---~H~Fh~~CI~~Wl~~---------~~tCPvCR~ 180 (184)
..| .=.||..||..++.. .-.||.||.
T Consensus 31 ~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 31 SSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 456 668999999988753 237999986
No 150
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=42.73 E-value=15 Score=25.36 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=22.6
Q ss_pred CCccccccccccCCCCCeE--ecCCCCcccHhHHHHH
Q 030003 134 EEDTCPICLEEYDTENPKL--ITKCEHHFHLSCILEW 168 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~--~~~C~H~Fh~~CI~~W 168 (184)
....|.||..... -.+. ...|...||-.|...+
T Consensus 54 ~~~~C~iC~~~~G--~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKSGG--ACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCCCc--eeEEcCCCCCCcCCCHHHHHHC
Confidence 4678999998742 2222 2237789999998663
No 151
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.56 E-value=4.2 Score=33.37 Aligned_cols=48 Identities=25% Similarity=0.504 Sum_probs=36.1
Q ss_pred CCccccccccccCCC--C-CeEecC--------CCCcccHhHHHHHHhCCC-CCCccCCc
Q 030003 134 EEDTCPICLEEYDTE--N-PKLITK--------CEHHFHLSCILEWNERSE-SCPICDQE 181 (184)
Q Consensus 134 ~~~~C~ICle~~~~~--~-~~~~~~--------C~H~Fh~~CI~~Wl~~~~-tCPvCR~~ 181 (184)
....|.||...|... . ...++. |||..|..|+..-+.... .||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 336799999999632 1 114455 999999999999987654 89999864
No 152
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=42.43 E-value=4 Score=33.64 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=21.5
Q ss_pred CCccccccccccCCCCCeEecC----CCCcccHhHHHHHHhCCCCCCccCC
Q 030003 134 EEDTCPICLEEYDTENPKLITK----CEHHFHLSCILEWNERSESCPICDQ 180 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~----C~H~Fh~~CI~~Wl~~~~tCPvCR~ 180 (184)
....||||=..... .++.-. =.|.+|.-|-.+|-.....||.|..
T Consensus 171 ~~g~CPvCGs~P~~--s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 171 QRGYCPVCGSPPVL--SVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp T-SS-TTT---EEE--EEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred cCCcCCCCCCcCce--EEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 34689999876531 111111 1477889999999888889999954
No 153
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=42.17 E-value=41 Score=22.24 Aligned_cols=49 Identities=18% Similarity=0.436 Sum_probs=20.6
Q ss_pred CCCccccccccccCC---CCC-eEecCCCCcccHhHHHH-HHhCCCCCCccCCc
Q 030003 133 EEEDTCPICLEEYDT---ENP-KLITKCEHHFHLSCILE-WNERSESCPICDQE 181 (184)
Q Consensus 133 ~~~~~C~ICle~~~~---~~~-~~~~~C~H~Fh~~CI~~-Wl~~~~tCPvCR~~ 181 (184)
.....|-||=+.... ++. +....|+--.|+.|..- .-+.++.||.|+..
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ 60 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTR 60 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCC
Confidence 356689999998832 333 23346888899999753 33457799999864
No 154
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=41.52 E-value=16 Score=24.12 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=24.0
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHH
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILE 167 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~ 167 (184)
.....|.+|.......-.-....|.-.||..|...
T Consensus 34 ~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 34 RRKLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred HhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 34568999998743212224457889999999765
No 155
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.78 E-value=14 Score=25.14 Aligned_cols=12 Identities=25% Similarity=0.814 Sum_probs=10.6
Q ss_pred cccHhHHHHHHh
Q 030003 159 HFHLSCILEWNE 170 (184)
Q Consensus 159 ~Fh~~CI~~Wl~ 170 (184)
-||..|+..|..
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 156
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=40.36 E-value=25 Score=26.38 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=24.7
Q ss_pred ccCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 130 AASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
........|+.|--.|.. ...++....||.|...+.
T Consensus 104 e~~~~~Y~Cp~c~~r~tf------------------~eA~~~~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 104 ETNNMFFICPNMCVRFTF------------------NEAMELNFTCPRCGAMLD 139 (158)
T ss_pred ccCCCeEECCCCCcEeeH------------------HHHHHcCCcCCCCCCEee
Confidence 334566789998877752 233445788999988764
No 157
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=40.30 E-value=26 Score=32.96 Aligned_cols=50 Identities=22% Similarity=0.557 Sum_probs=32.4
Q ss_pred cCCCCccccccccccCC----CCCe------EecCCCCcccHhHHHHHHhCCCCCCccCCcccC
Q 030003 131 ASEEEDTCPICLEEYDT----ENPK------LITKCEHHFHLSCILEWNERSESCPICDQESLI 184 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~----~~~~------~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~~ 184 (184)
....+..|+-|...|-. +.++ +..-|.|.-|..=|. +.+.||+|...+.|
T Consensus 1127 i~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs----~y~~CPLCHs~~~~ 1186 (1189)
T KOG2041|consen 1127 IDPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS----KYNCCPLCHSMESF 1186 (1189)
T ss_pred CCccCCCChhhcCcCceeeccCCccccceEEEcccccccccccccc----ccccCccccChhhc
Confidence 34456778888887732 3332 234688988876653 35689999876543
No 158
>PLN02189 cellulose synthase
Probab=40.14 E-value=29 Score=33.79 Aligned_cols=48 Identities=21% Similarity=0.496 Sum_probs=33.1
Q ss_pred CCccccccccccCC---CCCe-EecCCCCcccHhHHHH-HHhCCCCCCccCCc
Q 030003 134 EEDTCPICLEEYDT---ENPK-LITKCEHHFHLSCILE-WNERSESCPICDQE 181 (184)
Q Consensus 134 ~~~~C~ICle~~~~---~~~~-~~~~C~H~Fh~~CI~~-Wl~~~~tCPvCR~~ 181 (184)
....|.||-+++.. +++- ..-.|+--.|..|..- .-+.++.||.|+..
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~ 85 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTR 85 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCc
Confidence 45589999999842 3332 3335888899999842 22336799999874
No 159
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=39.64 E-value=33 Score=31.71 Aligned_cols=43 Identities=16% Similarity=0.376 Sum_probs=23.7
Q ss_pred CccccccccccCCCCCeEecCCCCcccH--hHHHH-HHhC---C---CCCCccCCcccC
Q 030003 135 EDTCPICLEEYDTENPKLITKCEHHFHL--SCILE-WNER---S---ESCPICDQESLI 184 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~--~CI~~-Wl~~---~---~tCPvCR~~l~~ 184 (184)
...|+|+.-. +.+||.++.|. .|... |+-. . -.||+|.+...|
T Consensus 306 SL~CPl~~~R-------m~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~ 357 (636)
T KOG2169|consen 306 SLNCPLSKMR-------MSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPF 357 (636)
T ss_pred EecCCcccce-------eecCCcccccccceecchhhhHHhccCCCeeeCccCCccccc
Confidence 3556666544 44555555544 45543 3321 1 169999887653
No 160
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=39.55 E-value=7.2 Score=22.37 Aligned_cols=28 Identities=21% Similarity=0.548 Sum_probs=15.8
Q ss_pred EecCCCCcccHhHHHHHHhCCCCCCccCC
Q 030003 152 LITKCEHHFHLSCILEWNERSESCPICDQ 180 (184)
Q Consensus 152 ~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~ 180 (184)
.-..|||.|-..--..= .....||.|..
T Consensus 7 ~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 7 RCEECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred EeCCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 34578887764321110 22447999987
No 161
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.26 E-value=27 Score=18.76 Aligned_cols=9 Identities=33% Similarity=1.062 Sum_probs=6.0
Q ss_pred CCCCCccCC
Q 030003 172 SESCPICDQ 180 (184)
Q Consensus 172 ~~tCPvCR~ 180 (184)
...||+|..
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 337888865
No 162
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.07 E-value=22 Score=24.39 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=28.5
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHH
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWN 169 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl 169 (184)
.+..|.||-..+..++....++ .-..|.+|+.+=.
T Consensus 5 kewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~ 39 (103)
T COG4847 5 KEWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESK 39 (103)
T ss_pred ceeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHH
Confidence 3568999999998888878888 6678999987644
No 163
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=38.93 E-value=30 Score=26.52 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=24.4
Q ss_pred cCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.......|+.|--.|... ..++....||.|...++
T Consensus 113 ~~~~~Y~Cp~C~~rytf~------------------eA~~~~F~Cp~Cg~~L~ 147 (178)
T PRK06266 113 ENNMFFFCPNCHIRFTFD------------------EAMEYGFRCPQCGEMLE 147 (178)
T ss_pred cCCCEEECCCCCcEEeHH------------------HHhhcCCcCCCCCCCCe
Confidence 334667899988777522 33456788999988775
No 164
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=38.36 E-value=5.7 Score=32.91 Aligned_cols=36 Identities=25% Similarity=0.483 Sum_probs=27.4
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhC
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER 171 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~ 171 (184)
..|.||+++|..+.....+.|.-.||..|+..|+..
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTT 250 (288)
T ss_pred eecHHHHHHHhcccccchhhcccccccccccccccc
Confidence 489999999964334455555559999999999875
No 165
>PRK01343 zinc-binding protein; Provisional
Probab=37.61 E-value=19 Score=22.30 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=7.3
Q ss_pred CCCCCccCCcc
Q 030003 172 SESCPICDQES 182 (184)
Q Consensus 172 ~~tCPvCR~~l 182 (184)
...||+|++++
T Consensus 9 ~~~CP~C~k~~ 19 (57)
T PRK01343 9 TRPCPECGKPS 19 (57)
T ss_pred CCcCCCCCCcC
Confidence 44677777764
No 166
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=37.18 E-value=40 Score=28.44 Aligned_cols=50 Identities=22% Similarity=0.594 Sum_probs=33.8
Q ss_pred CCCccccccccccC---------------CCCCe-EecCCCCcccHhHHHHHHhC---------CCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYD---------------TENPK-LITKCEHHFHLSCILEWNER---------SESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~---------------~~~~~-~~~~C~H~Fh~~CI~~Wl~~---------~~tCPvCR~~l 182 (184)
..+..||+|+..-. .+-+. ...||||.--..=.+-|-+. +..||.|-..+
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L 413 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQL 413 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhh
Confidence 44678999996431 11111 45699998888888888764 34799997654
No 167
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=35.87 E-value=24 Score=19.60 Aligned_cols=26 Identities=31% Similarity=0.663 Sum_probs=15.3
Q ss_pred ccccccccccCCCC--------CeEecCCCCccc
Q 030003 136 DTCPICLEEYDTEN--------PKLITKCEHHFH 161 (184)
Q Consensus 136 ~~C~ICle~~~~~~--------~~~~~~C~H~Fh 161 (184)
..||-|...|...+ .+.-..|+|.|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 36888888874322 223345677764
No 168
>PF12773 DZR: Double zinc ribbon
Probab=34.90 E-value=29 Score=20.21 Aligned_cols=7 Identities=43% Similarity=1.232 Sum_probs=3.4
Q ss_pred CCCccCC
Q 030003 174 SCPICDQ 180 (184)
Q Consensus 174 tCPvCR~ 180 (184)
.||.|..
T Consensus 31 ~C~~Cg~ 37 (50)
T PF12773_consen 31 ICPNCGA 37 (50)
T ss_pred CCcCCcC
Confidence 4555544
No 169
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=34.46 E-value=1.4e+02 Score=25.26 Aligned_cols=44 Identities=9% Similarity=-0.103 Sum_probs=32.5
Q ss_pred CCCccccccccccCCCCCeEecCCCC-cccHhHHHHHHhCCCCCCccCCc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEH-HFHLSCILEWNERSESCPICDQE 181 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H-~Fh~~CI~~Wl~~~~tCPvCR~~ 181 (184)
.....|-.|-+... ..++.+|+| .||.+|.. +.-+.+||+|...
T Consensus 341 ~s~~~~~~~~~~~~---st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~ 385 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLL---STIWSGGNMNLSPGSLAS--ASASPTSSTCDHN 385 (394)
T ss_pred hhhcccccccCcee---eeEeecCCcccChhhhhh--cccCCcccccccc
Confidence 44567888876652 237789998 78999977 5667799999753
No 170
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=33.98 E-value=27 Score=20.99 Aligned_cols=23 Identities=35% Similarity=0.885 Sum_probs=11.8
Q ss_pred CCCCcccHhHHHHHHhCCCCCCcc
Q 030003 155 KCEHHFHLSCILEWNERSESCPIC 178 (184)
Q Consensus 155 ~C~H~Fh~~CI~~Wl~~~~tCPvC 178 (184)
.|||.|-..= ..-..+...||.|
T Consensus 33 ~Cgh~w~~~v-~~R~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASV-NDRTRRGKGCPYC 55 (55)
T ss_pred CCCCeeEccH-hhhccCCCCCCCC
Confidence 4555554332 2222456678887
No 171
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=32.67 E-value=17 Score=18.98 Aligned_cols=10 Identities=30% Similarity=1.212 Sum_probs=4.6
Q ss_pred CCCccCCccc
Q 030003 174 SCPICDQESL 183 (184)
Q Consensus 174 tCPvCR~~l~ 183 (184)
+||+|...++
T Consensus 1 ~CP~C~s~l~ 10 (28)
T PF03119_consen 1 TCPVCGSKLV 10 (28)
T ss_dssp B-TTT--BEE
T ss_pred CcCCCCCEeE
Confidence 4888877654
No 172
>COG0267 RpmG Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]
Probab=32.23 E-value=12 Score=22.54 Aligned_cols=15 Identities=33% Similarity=0.875 Sum_probs=10.8
Q ss_pred hCCCCCCccCCcccC
Q 030003 170 ERSESCPICDQESLI 184 (184)
Q Consensus 170 ~~~~tCPvCR~~l~~ 184 (184)
+....||.||+.+++
T Consensus 32 elkKycp~~~khtlh 46 (50)
T COG0267 32 ELKKYCPVCRKHTLH 46 (50)
T ss_pred EEEecCcccccEEEE
Confidence 345689999987653
No 173
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.91 E-value=25 Score=25.67 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=15.8
Q ss_pred cccccccCCCCCeEecCCCCcccHh
Q 030003 139 PICLEEYDTENPKLITKCEHHFHLS 163 (184)
Q Consensus 139 ~ICle~~~~~~~~~~~~C~H~Fh~~ 163 (184)
-||+..- ..++.-.|||.|+..
T Consensus 61 fi~qs~~---~rv~rcecghsf~d~ 82 (165)
T COG4647 61 FICQSAQ---KRVIRCECGHSFGDY 82 (165)
T ss_pred EEEeccc---ccEEEEeccccccCh
Confidence 4666553 557888999999863
No 174
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=31.34 E-value=19 Score=30.20 Aligned_cols=45 Identities=20% Similarity=0.408 Sum_probs=31.3
Q ss_pred CCccccccccccCCCCCeEec--CC--CCcccHhHHHHHHhCCCCCCccCC
Q 030003 134 EEDTCPICLEEYDTENPKLIT--KC--EHHFHLSCILEWNERSESCPICDQ 180 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~--~C--~H~Fh~~CI~~Wl~~~~tCPvCR~ 180 (184)
....||||=...... ++.. .= .|.+|.-|-.+|-.....||.|..
T Consensus 186 ~~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 467899998775311 1111 22 267788899999888899999964
No 175
>PF14353 CpXC: CpXC protein
Probab=30.72 E-value=54 Score=23.25 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=7.1
Q ss_pred CCCCccCCccc
Q 030003 173 ESCPICDQESL 183 (184)
Q Consensus 173 ~tCPvCR~~l~ 183 (184)
.+||.|...+.
T Consensus 39 ~~CP~Cg~~~~ 49 (128)
T PF14353_consen 39 FTCPSCGHKFR 49 (128)
T ss_pred EECCCCCCcee
Confidence 36888876543
No 176
>PF11809 DUF3330: Domain of unknown function (DUF3330); InterPro: IPR021767 This family of proteins are functionally uncharacterised. This family is only found in bacteria.
Probab=30.10 E-value=15 Score=23.58 Aligned_cols=37 Identities=27% Similarity=0.661 Sum_probs=24.8
Q ss_pred CCccccccccccCCCCCeEecCCC----Cccc-HhHHHHHHhCC
Q 030003 134 EEDTCPICLEEYDTENPKLITKCE----HHFH-LSCILEWNERS 172 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~----H~Fh-~~CI~~Wl~~~ 172 (184)
+...|-+|+.++-. + ...++=+ ++|| ++|..+|..+.
T Consensus 10 ~~~sC~vC~KEIPl-~-~a~t~E~~eYV~hFCGLeCY~~w~a~~ 51 (70)
T PF11809_consen 10 KTTSCCVCCKEIPL-D-AAFTPEAAEYVEHFCGLECYQRWQARA 51 (70)
T ss_pred ccchHHHHhhhCCh-h-hccCcchHHHHHHHhhHHHHHHHHHHH
Confidence 34679999998842 2 2455555 4455 57999999764
No 177
>PF15616 TerY-C: TerY-C metal binding domain
Probab=29.17 E-value=27 Score=25.53 Aligned_cols=42 Identities=26% Similarity=0.614 Sum_probs=30.1
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.....||-|-..+. .++-.||++||.. . ....+||-|.+...
T Consensus 75 ~g~PgCP~CGn~~~----fa~C~CGkl~Ci~---g--~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 75 IGAPGCPHCGNQYA----FAVCGCGKLFCID---G--EGEVTCPWCGNEGS 116 (131)
T ss_pred cCCCCCCCCcChhc----EEEecCCCEEEeC---C--CCCEECCCCCCeee
Confidence 45578999988863 3555899998832 2 33568999987654
No 178
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.10 E-value=17 Score=31.87 Aligned_cols=38 Identities=18% Similarity=0.558 Sum_probs=26.5
Q ss_pred CCccccccccccCCCCCe---E--ecCCCCcccHhHHHHHHhC
Q 030003 134 EEDTCPICLEEYDTENPK---L--ITKCEHHFHLSCILEWNER 171 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~---~--~~~C~H~Fh~~CI~~Wl~~ 171 (184)
+...||.|...+...... . ...|.|.||..|+..|-..
T Consensus 225 ntk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 225 NTKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred cCccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 344599999888532211 1 2249999999998888765
No 179
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=28.92 E-value=17 Score=30.45 Aligned_cols=44 Identities=18% Similarity=0.394 Sum_probs=29.9
Q ss_pred CccccccccccCCCCCeEec---CCC--CcccHhHHHHHHhCCCCCCccCC
Q 030003 135 EDTCPICLEEYDTENPKLIT---KCE--HHFHLSCILEWNERSESCPICDQ 180 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~---~C~--H~Fh~~CI~~Wl~~~~tCPvCR~ 180 (184)
...||||=...... ++.. .=| |.+|.-|-.+|-.....||.|..
T Consensus 184 ~~~CPvCGs~P~~s--~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVAS--MVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhh--hhcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 44899998765311 1111 122 56778899999888889999964
No 180
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=28.14 E-value=17 Score=22.07 Aligned_cols=7 Identities=57% Similarity=1.711 Sum_probs=2.1
Q ss_pred CCCccCC
Q 030003 174 SCPICDQ 180 (184)
Q Consensus 174 tCPvCR~ 180 (184)
+||+|..
T Consensus 26 tCP~C~a 32 (54)
T PF09237_consen 26 TCPICGA 32 (54)
T ss_dssp E-TTT--
T ss_pred CCCcchh
Confidence 4555544
No 181
>TIGR01023 rpmG_bact ribosomal protein L33, bacterial type. This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents.
Probab=28.13 E-value=20 Score=21.94 Aligned_cols=15 Identities=33% Similarity=0.813 Sum_probs=10.9
Q ss_pred hCCCCCCccCCcccC
Q 030003 170 ERSESCPICDQESLI 184 (184)
Q Consensus 170 ~~~~tCPvCR~~l~~ 184 (184)
+....||.||+.++|
T Consensus 36 ~lkKycp~~~khtlh 50 (54)
T TIGR01023 36 ELRKYCPVCRKHVLH 50 (54)
T ss_pred EEECcCCCCCCeEeE
Confidence 345679999987764
No 182
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=27.57 E-value=17 Score=25.50 Aligned_cols=29 Identities=38% Similarity=0.792 Sum_probs=19.8
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHh
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE 170 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~ 170 (184)
..|++|..+|.-++. ++.+|-.|..+|-+
T Consensus 4 p~cp~c~sEytYed~------~~~~cpec~~ew~~ 32 (112)
T COG2824 4 PPCPKCNSEYTYEDG------GQLICPECAHEWNE 32 (112)
T ss_pred CCCCccCCceEEecC------ceEeCchhcccccc
Confidence 469999999954444 24566777778864
No 183
>PRK00595 rpmG 50S ribosomal protein L33; Validated
Probab=27.49 E-value=20 Score=21.83 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=10.7
Q ss_pred hCCCCCCccCCcccC
Q 030003 170 ERSESCPICDQESLI 184 (184)
Q Consensus 170 ~~~~tCPvCR~~l~~ 184 (184)
+....||.||+.+++
T Consensus 35 ~lkKycp~~~khtlh 49 (53)
T PRK00595 35 ELKKYDPVLRKHVLH 49 (53)
T ss_pred EEECcCCCCCCEEeE
Confidence 345679999987664
No 184
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=26.91 E-value=6.3 Score=24.05 Aligned_cols=33 Identities=21% Similarity=0.544 Sum_probs=18.2
Q ss_pred ccccc--cccccCCCCC-----eEecCCCCcccHhHHHHH
Q 030003 136 DTCPI--CLEEYDTENP-----KLITKCEHHFHLSCILEW 168 (184)
Q Consensus 136 ~~C~I--Cle~~~~~~~-----~~~~~C~H~Fh~~CI~~W 168 (184)
..|+- |-..+...+. +.-..|++.||..|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 47877 8777743221 233349999999998877
No 185
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.40 E-value=21 Score=28.18 Aligned_cols=15 Identities=60% Similarity=1.101 Sum_probs=13.0
Q ss_pred CCCCccccccccccC
Q 030003 132 SEEEDTCPICLEEYD 146 (184)
Q Consensus 132 ~~~~~~C~ICle~~~ 146 (184)
.+++..|+||++.|.
T Consensus 10 ~~~~~~C~iC~~~~~ 24 (386)
T KOG2177|consen 10 LQEELTCPICLEYFR 24 (386)
T ss_pred ccccccChhhHHHhh
Confidence 357889999999997
No 186
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=26.18 E-value=24 Score=35.64 Aligned_cols=52 Identities=27% Similarity=0.535 Sum_probs=39.8
Q ss_pred ccCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCC----CCCccCCc
Q 030003 130 AASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE----SCPICDQE 181 (184)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~----tCPvCR~~ 181 (184)
........|.||.......+-+....|.-.||..|+..-+.... .||-||..
T Consensus 1103 ~~s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1103 DRSAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred ccccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 34456778999999987555555567889999999998776532 79999864
No 187
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=25.84 E-value=25 Score=20.71 Aligned_cols=24 Identities=29% Similarity=0.722 Sum_probs=14.5
Q ss_pred EecCCCCcccHhHHHHHHh----CCCCCCccCC
Q 030003 152 LITKCEHHFHLSCILEWNE----RSESCPICDQ 180 (184)
Q Consensus 152 ~~~~C~H~Fh~~CI~~Wl~----~~~tCPvCR~ 180 (184)
.-..|||.|-. |.. ....||.|..
T Consensus 7 ~C~~Cg~~fe~-----~~~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 7 RCTACGHRFEV-----LQKMSDDPLATCPECGG 34 (52)
T ss_pred EeCCCCCEeEE-----EEecCCCCCCCCCCCCC
Confidence 34567887763 322 2237999986
No 188
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=25.78 E-value=63 Score=26.55 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=27.2
Q ss_pred CCccccccccccCCCCCeEecC--CCCcccHhHHHHHH-hCCCCCC
Q 030003 134 EEDTCPICLEEYDTENPKLITK--CEHHFHLSCILEWN-ERSESCP 176 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~--C~H~Fh~~CI~~Wl-~~~~tCP 176 (184)
.-..|.||+|.-..+.+...+. =.=.=|.+|..+|- -.+..||
T Consensus 29 tLsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 29 TLSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred ceeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 4457999999886555543221 11134699999994 4466777
No 189
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=25.67 E-value=29 Score=21.73 Aligned_cols=10 Identities=30% Similarity=1.115 Sum_probs=6.9
Q ss_pred CCCccCCccc
Q 030003 174 SCPICDQESL 183 (184)
Q Consensus 174 tCPvCR~~l~ 183 (184)
-||+||.++.
T Consensus 10 aCP~~kg~L~ 19 (60)
T COG2835 10 ACPVCKGPLV 19 (60)
T ss_pred eccCcCCcce
Confidence 4888877654
No 190
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=25.43 E-value=63 Score=24.82 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=25.3
Q ss_pred ccCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 130 AASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 130 ~~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
........|+.|...|. ..+-++...+||.|...+.
T Consensus 108 ~~~~~~y~C~~~~~r~s------------------fdeA~~~~F~Cp~Cg~~L~ 143 (176)
T COG1675 108 ETENNYYVCPNCHVKYS------------------FDEAMELGFTCPKCGEDLE 143 (176)
T ss_pred hccCCceeCCCCCCccc------------------HHHHHHhCCCCCCCCchhh
Confidence 44567788988888775 3344555689999987653
No 191
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.16 E-value=50 Score=26.44 Aligned_cols=20 Identities=25% Similarity=0.689 Sum_probs=13.7
Q ss_pred cHhHHHHHHhCCCCCCccCC
Q 030003 161 HLSCILEWNERSESCPICDQ 180 (184)
Q Consensus 161 h~~CI~~Wl~~~~tCPvCR~ 180 (184)
|.+|-...-.+-..||+|+.
T Consensus 197 C~sC~qqIHRNAPiCPlCK~ 216 (230)
T PF10146_consen 197 CQSCHQQIHRNAPICPLCKA 216 (230)
T ss_pred hHhHHHHHhcCCCCCccccc
Confidence 46665555455669999975
No 192
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=24.66 E-value=54 Score=18.81 Aligned_cols=17 Identities=29% Similarity=0.712 Sum_probs=10.4
Q ss_pred HHHHhCCCCCCccCCcc
Q 030003 166 LEWNERSESCPICDQES 182 (184)
Q Consensus 166 ~~Wl~~~~tCPvCR~~l 182 (184)
..|--...+||.|..++
T Consensus 11 ~G~~ML~~~Cp~C~~PL 27 (41)
T PF06677_consen 11 QGWTMLDEHCPDCGTPL 27 (41)
T ss_pred HhHhHhcCccCCCCCee
Confidence 34545566788776554
No 193
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.88 E-value=45 Score=19.31 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=7.1
Q ss_pred CCCCCccCCcc
Q 030003 172 SESCPICDQES 182 (184)
Q Consensus 172 ~~tCPvCR~~l 182 (184)
++.||+|..+|
T Consensus 8 ~K~C~~C~rpf 18 (42)
T PF10013_consen 8 SKICPVCGRPF 18 (42)
T ss_pred CCcCcccCCcc
Confidence 35677776665
No 194
>PRK00504 rpmG 50S ribosomal protein L33; Validated
Probab=22.84 E-value=27 Score=20.98 Aligned_cols=14 Identities=36% Similarity=0.897 Sum_probs=10.1
Q ss_pred hCCCCCCccCCccc
Q 030003 170 ERSESCPICDQESL 183 (184)
Q Consensus 170 ~~~~tCPvCR~~l~ 183 (184)
+..+.||.||+..+
T Consensus 32 elkKycp~c~khtl 45 (50)
T PRK00504 32 ELKKFCPRCNKHTL 45 (50)
T ss_pred EEECcCCCCCCeEe
Confidence 34567999988655
No 195
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=22.76 E-value=25 Score=28.47 Aligned_cols=29 Identities=34% Similarity=0.716 Sum_probs=23.0
Q ss_pred EecC-CCCcccHhHHHHHHhC-CCCCC--ccCC
Q 030003 152 LITK-CEHHFHLSCILEWNER-SESCP--ICDQ 180 (184)
Q Consensus 152 ~~~~-C~H~Fh~~CI~~Wl~~-~~tCP--vCR~ 180 (184)
.+-| |-|..|.+|+.+.|.+ ...|| -|.+
T Consensus 29 linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 29 LINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 3445 9999999999999987 45898 6654
No 196
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=22.70 E-value=55 Score=26.31 Aligned_cols=21 Identities=29% Similarity=0.746 Sum_probs=15.3
Q ss_pred ccHhHHHHHHhCCCCCCccCC
Q 030003 160 FHLSCILEWNERSESCPICDQ 180 (184)
Q Consensus 160 Fh~~CI~~Wl~~~~tCPvCR~ 180 (184)
.|..|....-.+-..||+|+.
T Consensus 251 ~ClsChqqIHRNAPiCPlCKa 271 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKA 271 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhh
Confidence 456776666566779999975
No 197
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=22.70 E-value=11 Score=25.43 Aligned_cols=38 Identities=24% Similarity=0.670 Sum_probs=25.9
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.-..|.||..... ++ |-+||..|.++ +..|-||.+.|+
T Consensus 53 ~~~kC~iCk~~vH--Q~------GshYC~tCAY~----KgiCAMCGKki~ 90 (100)
T KOG3476|consen 53 ALAKCRICKQLVH--QP------GSHYCQTCAYK----KGICAMCGKKIL 90 (100)
T ss_pred ccchhHHHHHHhc--CC------cchhHhHhhhh----hhHHHHhhhHhh
Confidence 3457999987764 33 44688888654 457888876553
No 198
>PLN02436 cellulose synthase A
Probab=22.48 E-value=89 Score=30.78 Aligned_cols=48 Identities=25% Similarity=0.569 Sum_probs=32.7
Q ss_pred CCccccccccccC---CCCCe-EecCCCCcccHhHHHHH-HhCCCCCCccCCc
Q 030003 134 EEDTCPICLEEYD---TENPK-LITKCEHHFHLSCILEW-NERSESCPICDQE 181 (184)
Q Consensus 134 ~~~~C~ICle~~~---~~~~~-~~~~C~H~Fh~~CI~~W-l~~~~tCPvCR~~ 181 (184)
....|-||-++.. .+++- ..-.|+--.|..|..-= -+.++.||.|+..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~ 87 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCc
Confidence 4458999999983 23432 23358888999998422 2336799999874
No 199
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=21.92 E-value=1e+02 Score=30.35 Aligned_cols=48 Identities=23% Similarity=0.555 Sum_probs=33.2
Q ss_pred CCccccccccccCC---CCCe-EecCCCCcccHhHHH-HHHhCCCCCCccCCc
Q 030003 134 EEDTCPICLEEYDT---ENPK-LITKCEHHFHLSCIL-EWNERSESCPICDQE 181 (184)
Q Consensus 134 ~~~~C~ICle~~~~---~~~~-~~~~C~H~Fh~~CI~-~Wl~~~~tCPvCR~~ 181 (184)
....|-||=++... +++- ..-.|+-=.|+.|.. +.-+.++.||.|+..
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktr 68 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTK 68 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCc
Confidence 44589999999832 3332 334688889999983 223346799999864
No 200
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=21.88 E-value=69 Score=22.29 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=25.2
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHH
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWN 169 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl 169 (184)
..|.||-.++..++....++= -..|+.|+.+=.
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~ 35 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK-GPVHYECFREKA 35 (101)
T ss_pred eEEEecCCeeeecceEEEecC-CcEeHHHHHHHH
Confidence 579999999987777555554 668999987644
No 201
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=21.76 E-value=27 Score=19.27 Aligned_cols=10 Identities=30% Similarity=0.969 Sum_probs=7.0
Q ss_pred CCCCCccCCc
Q 030003 172 SESCPICDQE 181 (184)
Q Consensus 172 ~~tCPvCR~~ 181 (184)
...||.|...
T Consensus 26 ~~~CP~Cg~~ 35 (41)
T smart00834 26 LATCPECGGD 35 (41)
T ss_pred CCCCCCCCCc
Confidence 4478888764
No 202
>PF12132 DUF3587: Protein of unknown function (DUF3587); InterPro: IPR021982 This entry is represented by Hyposoter fugitivus ichnovirus, Gp7; it is a family of uncharacterised viral proteins.
Probab=21.69 E-value=53 Score=25.77 Aligned_cols=19 Identities=26% Similarity=0.784 Sum_probs=14.6
Q ss_pred ecCCC----CcccHhHHHHHHhC
Q 030003 153 ITKCE----HHFHLSCILEWNER 171 (184)
Q Consensus 153 ~~~C~----H~Fh~~CI~~Wl~~ 171 (184)
...|. |+||..++..||+.
T Consensus 156 ~~~C~~gHfHHyCs~HV~~WL~~ 178 (199)
T PF12132_consen 156 VDECEYGHFHHYCSQHVNSWLNN 178 (199)
T ss_pred CCCCCCCCcChhhHHHHHHHHHH
Confidence 44565 78889999999863
No 203
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=21.64 E-value=38 Score=31.28 Aligned_cols=48 Identities=21% Similarity=0.566 Sum_probs=31.4
Q ss_pred CCCccccccccccCCCCC--eEecCCCCcccHhHHHHHHhCC-----CCCCccCC
Q 030003 133 EEEDTCPICLEEYDTENP--KLITKCEHHFHLSCILEWNERS-----ESCPICDQ 180 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~--~~~~~C~H~Fh~~CI~~Wl~~~-----~tCPvCR~ 180 (184)
.....|+||-..-..... ...-.|+-.||..|+..|+... -.||-||.
T Consensus 16 ~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 16 IVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 345677777655432222 2344688999999999999742 25887764
No 204
>PF15353 HECA: Headcase protein family homologue
Probab=21.57 E-value=59 Score=22.81 Aligned_cols=15 Identities=20% Similarity=0.631 Sum_probs=12.5
Q ss_pred CCCCcccHhHHHHHH
Q 030003 155 KCEHHFHLSCILEWN 169 (184)
Q Consensus 155 ~C~H~Fh~~CI~~Wl 169 (184)
|.++..|..|...|=
T Consensus 39 p~~~~MH~~CF~~wE 53 (107)
T PF15353_consen 39 PFGQYMHRECFEKWE 53 (107)
T ss_pred CCCCchHHHHHHHHH
Confidence 347999999999984
No 205
>CHL00104 rpl33 ribosomal protein L33
Probab=21.33 E-value=31 Score=22.08 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=10.4
Q ss_pred hCCCCCCccCCcccC
Q 030003 170 ERSESCPICDQESLI 184 (184)
Q Consensus 170 ~~~~tCPvCR~~l~~ 184 (184)
+....||.||+..++
T Consensus 47 elkKycp~c~kHtlh 61 (66)
T CHL00104 47 ELKKFCPYCYKHTIH 61 (66)
T ss_pred EEECcCCCCCCEeeE
Confidence 335579999987653
No 206
>PF05810 NinF: NinF protein; InterPro: IPR008712 This family consists of several bacteriophage NinF proteins as well as related sequences from Escherichia coli.
Probab=20.79 E-value=55 Score=20.19 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=17.7
Q ss_pred ccccccccCCCCCeEecCCCCcccHhHHHHHHh
Q 030003 138 CPICLEEYDTENPKLITKCEHHFHLSCILEWNE 170 (184)
Q Consensus 138 C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~ 170 (184)
|.-|-..+.+... +.|..|+.+||.
T Consensus 20 Ca~C~~~L~~~E~--------h~Ce~C~~E~l~ 44 (58)
T PF05810_consen 20 CANCGQKLHPDET--------HVCEECCAEWLV 44 (58)
T ss_pred HhccCcccccchh--------hHHHHHHHHHHh
Confidence 7777666643222 578999999987
No 207
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=20.68 E-value=61 Score=23.81 Aligned_cols=40 Identities=20% Similarity=0.477 Sum_probs=22.1
Q ss_pred cCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.......|+-|-..|...+...... ......||.|...|.
T Consensus 95 ~~~~~Y~Cp~C~~~y~~~ea~~~~d-------------~~~~f~Cp~Cg~~l~ 134 (147)
T smart00531 95 TNNAYYKCPNCQSKYTFLEANQLLD-------------MDGTFTCPRCGEELE 134 (147)
T ss_pred cCCcEEECcCCCCEeeHHHHHHhcC-------------CCCcEECCCCCCEEE
Confidence 3456678888887774221100000 012367999988764
No 208
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.55 E-value=1e+02 Score=25.32 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=30.1
Q ss_pred CCCCcccccccc-cc-CCCCCeEecCCCCcccHhHHHHHHh
Q 030003 132 SEEEDTCPICLE-EY-DTENPKLITKCEHHFHLSCILEWNE 170 (184)
Q Consensus 132 ~~~~~~C~ICle-~~-~~~~~~~~~~C~H~Fh~~CI~~Wl~ 170 (184)
....+.++++.. ++ ...+..+...|||+|+..|..-|+.
T Consensus 92 ~~~~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~ 132 (271)
T COG5574 92 FNREETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSI 132 (271)
T ss_pred cccccccccccCcccccccccceeeecccccchhhhHHHHH
Confidence 345677888887 44 2234458889999999999999987
No 209
>PHA03328 nuclear egress lamina protein UL31; Provisional
Probab=20.30 E-value=63 Score=27.11 Aligned_cols=11 Identities=55% Similarity=1.500 Sum_probs=8.0
Q ss_pred CCCcc--cCCCCC
Q 030003 1 MGGCC--CSSRKP 11 (184)
Q Consensus 1 ~~~c~--~~~~~~ 11 (184)
||||| |.+.+.
T Consensus 119 ~G~~C~~C~~~g~ 131 (316)
T PHA03328 119 IGGCCPTCSVSGE 131 (316)
T ss_pred cCccCCCCCCCCC
Confidence 78999 985443
Done!