Query 030003
Match_columns 184
No_of_seqs 251 out of 1623
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 11:00:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iym_A EL5; ring-H2 finger, ub 99.7 4.5E-18 1.5E-22 105.1 4.7 52 133-184 3-55 (55)
2 1x4j_A Ring finger protein 38; 99.7 2.4E-17 8.1E-22 108.3 3.5 52 132-183 20-71 (75)
3 2kiz_A E3 ubiquitin-protein li 99.7 5.2E-17 1.8E-21 104.9 5.0 52 132-183 11-62 (69)
4 2l0b_A E3 ubiquitin-protein li 99.7 4.2E-17 1.5E-21 111.2 4.7 52 132-183 37-88 (91)
5 2ep4_A Ring finger protein 24; 99.7 5.9E-17 2E-21 106.0 4.4 51 133-183 13-63 (74)
6 2ect_A Ring finger protein 126 99.6 8.2E-17 2.8E-21 106.4 4.5 52 132-183 12-63 (78)
7 2ecl_A Ring-box protein 2; RNF 99.6 1.6E-16 5.5E-21 106.1 4.6 51 133-183 13-75 (81)
8 2ecm_A Ring finger and CHY zin 99.6 2.3E-16 8E-21 97.2 4.6 50 133-182 3-53 (55)
9 3dpl_R Ring-box protein 1; ubi 99.6 1.8E-16 6.2E-21 111.0 4.1 53 132-184 34-101 (106)
10 2djb_A Polycomb group ring fin 99.6 4.5E-16 1.5E-20 101.4 4.6 50 132-183 12-61 (72)
11 1v87_A Deltex protein 2; ring- 99.6 9.9E-16 3.4E-20 108.3 5.5 51 133-183 23-93 (114)
12 1chc_A Equine herpes virus-1 r 99.6 6.5E-16 2.2E-20 99.3 3.9 48 133-182 3-50 (68)
13 2ea6_A Ring finger protein 4; 99.6 8.4E-16 2.9E-20 98.8 4.1 52 132-183 12-67 (69)
14 3ng2_A RNF4, snurf, ring finge 99.6 7E-16 2.4E-20 99.9 3.1 51 133-183 8-62 (71)
15 2d8t_A Dactylidin, ring finger 99.6 9.6E-16 3.3E-20 99.6 3.2 48 133-183 13-60 (71)
16 4a0k_B E3 ubiquitin-protein li 99.6 3.2E-16 1.1E-20 111.4 -0.1 66 119-184 29-112 (117)
17 2d8s_A Cellular modulator of i 99.5 2.7E-15 9.1E-20 99.9 4.0 53 131-184 11-70 (80)
18 2xeu_A Ring finger protein 4; 99.5 1.8E-15 6.3E-20 95.8 2.6 50 134-183 2-55 (64)
19 2csy_A Zinc finger protein 183 99.5 4.5E-15 1.6E-19 98.7 4.4 47 133-182 13-59 (81)
20 2yur_A Retinoblastoma-binding 99.5 4.8E-15 1.6E-19 97.1 4.4 49 132-183 12-63 (74)
21 2ysl_A Tripartite motif-contai 99.5 8.2E-15 2.8E-19 95.3 5.1 49 132-183 17-68 (73)
22 4ayc_A E3 ubiquitin-protein li 99.5 2.5E-15 8.7E-20 109.8 2.6 47 133-182 51-97 (138)
23 2ecy_A TNF receptor-associated 99.5 8.3E-15 2.8E-19 93.7 4.4 48 133-183 13-61 (66)
24 3lrq_A E3 ubiquitin-protein li 99.5 3.7E-15 1.3E-19 103.2 2.5 49 133-183 20-69 (100)
25 2ct2_A Tripartite motif protei 99.5 1.5E-14 5.2E-19 97.2 5.4 52 132-183 12-67 (88)
26 2ecn_A Ring finger protein 141 99.5 2.1E-15 7.3E-20 97.5 0.7 47 133-183 13-59 (70)
27 1t1h_A Gspef-atpub14, armadill 99.5 1.4E-14 4.7E-19 95.6 4.1 49 132-183 5-54 (78)
28 2y43_A E3 ubiquitin-protein li 99.5 9E-15 3.1E-19 100.9 3.0 49 133-183 20-68 (99)
29 2ysj_A Tripartite motif-contai 99.5 3.6E-14 1.2E-18 89.8 5.5 45 131-178 16-63 (63)
30 2ckl_A Polycomb group ring fin 99.5 1.8E-14 6.2E-19 100.9 4.3 49 133-183 13-61 (108)
31 2egp_A Tripartite motif-contai 99.5 1.1E-14 3.6E-19 96.2 1.8 49 132-183 9-64 (79)
32 2ecw_A Tripartite motif-contai 99.5 4.7E-14 1.6E-18 94.0 4.9 48 133-183 17-70 (85)
33 3ztg_A E3 ubiquitin-protein li 99.5 4.6E-14 1.6E-18 95.9 4.5 48 132-182 10-60 (92)
34 2ecv_A Tripartite motif-contai 99.4 6.5E-14 2.2E-18 93.3 4.2 48 133-183 17-70 (85)
35 1g25_A CDK-activating kinase a 99.4 7E-14 2.4E-18 89.1 3.9 50 134-183 2-54 (65)
36 2ecj_A Tripartite motif-contai 99.4 1E-13 3.4E-18 86.1 4.2 44 132-178 12-58 (58)
37 3fl2_A E3 ubiquitin-protein li 99.4 5.5E-14 1.9E-18 100.8 3.1 47 133-182 50-97 (124)
38 2ckl_B Ubiquitin ligase protei 99.4 7.7E-14 2.6E-18 104.7 3.1 48 133-182 52-100 (165)
39 4ap4_A E3 ubiquitin ligase RNF 99.4 1E-13 3.5E-18 99.7 3.2 51 133-183 5-59 (133)
40 2ct0_A Non-SMC element 1 homol 99.4 5.7E-13 1.9E-17 87.1 5.3 49 133-183 13-63 (74)
41 1jm7_A BRCA1, breast cancer ty 99.4 2.3E-13 7.8E-18 95.5 3.1 48 133-183 19-69 (112)
42 3l11_A E3 ubiquitin-protein li 99.4 7.3E-14 2.5E-18 98.8 0.6 47 133-182 13-60 (115)
43 3hct_A TNF receptor-associated 99.4 2.6E-13 8.8E-18 96.5 3.3 49 132-183 15-64 (118)
44 2kr4_A Ubiquitin conjugation f 99.4 5E-13 1.7E-17 89.8 4.2 47 133-182 12-58 (85)
45 1z6u_A NP95-like ring finger p 99.4 2.7E-13 9.1E-18 100.5 3.1 48 133-183 76-124 (150)
46 1e4u_A Transcriptional repress 99.3 6.7E-13 2.3E-17 87.8 4.4 50 132-182 8-60 (78)
47 1wgm_A Ubiquitin conjugation f 99.3 1.2E-12 4E-17 90.3 4.6 48 133-183 20-68 (98)
48 1rmd_A RAG1; V(D)J recombinati 99.3 5.7E-13 1.9E-17 94.3 3.0 48 133-183 21-69 (116)
49 4ap4_A E3 ubiquitin ligase RNF 99.3 8.4E-13 2.9E-17 94.9 3.9 52 131-182 68-123 (133)
50 2kre_A Ubiquitin conjugation f 99.3 9.6E-13 3.3E-17 91.1 3.9 49 132-183 26-74 (100)
51 3knv_A TNF receptor-associated 99.3 4.3E-13 1.5E-17 98.4 1.6 48 132-182 28-76 (141)
52 2vje_A E3 ubiquitin-protein li 99.3 1.4E-12 4.7E-17 83.0 3.4 48 133-182 6-55 (64)
53 1bor_A Transcription factor PM 99.3 7.3E-13 2.5E-17 82.0 1.9 46 132-183 3-48 (56)
54 1jm7_B BARD1, BRCA1-associated 99.3 7E-13 2.4E-17 94.1 1.0 47 133-183 20-66 (117)
55 2vje_B MDM4 protein; proto-onc 99.2 3.9E-12 1.3E-16 80.6 3.1 48 133-182 5-54 (63)
56 4ic3_A E3 ubiquitin-protein li 99.2 2.9E-12 1E-16 83.7 1.3 43 133-182 22-65 (74)
57 2yu4_A E3 SUMO-protein ligase 99.2 8.3E-12 2.8E-16 85.3 3.5 48 132-181 4-59 (94)
58 2y1n_A E3 ubiquitin-protein li 99.2 1.9E-11 6.4E-16 102.8 5.0 47 134-183 331-378 (389)
59 3hcs_A TNF receptor-associated 99.2 1.4E-11 4.7E-16 92.8 3.3 50 131-183 14-64 (170)
60 2c2l_A CHIP, carboxy terminus 99.1 3.8E-11 1.3E-15 96.3 4.1 49 132-183 205-254 (281)
61 2ecg_A Baculoviral IAP repeat- 99.1 2.6E-11 9E-16 79.3 1.5 43 133-182 23-66 (75)
62 2f42_A STIP1 homology and U-bo 99.0 1.8E-10 6E-15 87.5 4.2 50 131-183 102-152 (179)
63 3htk_C E3 SUMO-protein ligase 99.0 1.4E-10 4.7E-15 92.5 3.5 50 131-182 177-230 (267)
64 1vyx_A ORF K3, K3RING; zinc-bi 99.0 2.4E-10 8.1E-15 71.7 3.9 49 133-184 4-59 (60)
65 2ea5_A Cell growth regulator w 99.0 2.8E-10 9.4E-15 73.1 3.8 44 133-183 13-57 (68)
66 3k1l_B Fancl; UBC, ring, RWD, 99.0 1.2E-10 4E-15 95.9 1.8 52 132-183 305-372 (381)
67 2yho_A E3 ubiquitin-protein li 99.0 9E-11 3.1E-15 77.6 0.7 42 134-182 17-59 (79)
68 2bay_A PRE-mRNA splicing facto 98.9 5.2E-10 1.8E-14 70.3 2.5 47 135-183 3-49 (61)
69 1wim_A KIAA0161 protein; ring 98.9 5.5E-10 1.9E-14 76.0 2.8 49 133-181 3-61 (94)
70 3t6p_A Baculoviral IAP repeat- 98.8 8.9E-10 3E-14 91.7 0.7 43 133-182 293-336 (345)
71 3vk6_A E3 ubiquitin-protein li 98.6 3.3E-08 1.1E-12 67.2 3.5 45 137-183 3-48 (101)
72 3nw0_A Non-structural maintena 98.1 2.6E-06 8.9E-11 67.3 4.2 49 133-183 178-228 (238)
73 2ko5_A Ring finger protein Z; 97.0 0.00016 5.4E-09 48.4 0.9 45 133-182 26-71 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 96.8 0.00071 2.4E-08 45.8 2.7 33 134-168 2-36 (101)
75 2lri_C Autoimmune regulator; Z 94.3 0.034 1.2E-06 34.8 3.1 46 133-181 10-59 (66)
76 1we9_A PHD finger family prote 92.6 0.018 6.1E-07 35.6 -0.4 49 132-180 3-57 (64)
77 2ysm_A Myeloid/lymphoid or mix 92.2 0.054 1.8E-06 37.1 1.6 39 132-170 4-42 (111)
78 2k16_A Transcription initiatio 91.7 0.034 1.2E-06 35.4 0.1 49 133-181 16-68 (75)
79 3m62_A Ubiquitin conjugation f 91.7 0.14 4.8E-06 47.6 4.1 49 131-182 887-936 (968)
80 1wil_A KIAA1045 protein; ring 91.0 0.31 1E-05 31.8 4.1 35 133-168 13-47 (89)
81 2l5u_A Chromodomain-helicase-D 90.5 0.12 4E-06 31.6 1.7 47 132-181 8-58 (61)
82 1f62_A Transcription factor WS 90.5 0.16 5.5E-06 29.6 2.3 45 137-181 2-50 (51)
83 1mm2_A MI2-beta; PHD, zinc fin 89.8 0.084 2.9E-06 32.3 0.7 47 133-182 7-57 (61)
84 2vpb_A Hpygo1, pygopus homolog 88.0 0.45 1.5E-05 29.4 3.1 35 132-166 5-41 (65)
85 1z60_A TFIIH basal transcripti 87.7 0.24 8.4E-06 30.1 1.7 43 136-178 16-58 (59)
86 3i2d_A E3 SUMO-protein ligase 86.9 0.51 1.7E-05 39.2 3.7 47 134-182 248-298 (371)
87 2yql_A PHD finger protein 21A; 86.6 0.067 2.3E-06 32.1 -1.3 46 132-180 6-55 (56)
88 4fo9_A E3 SUMO-protein ligase 86.3 0.58 2E-05 38.7 3.8 48 134-183 214-265 (360)
89 3v43_A Histone acetyltransfera 86.2 1.4 4.9E-05 30.0 5.2 34 133-166 3-42 (112)
90 1wep_A PHF8; structural genomi 84.9 0.6 2E-05 29.8 2.6 48 133-181 10-63 (79)
91 1weu_A Inhibitor of growth fam 83.5 0.61 2.1E-05 30.9 2.2 45 133-181 34-85 (91)
92 2e6r_A Jumonji/ARID domain-con 83.4 0.091 3.1E-06 35.0 -1.9 48 133-180 14-65 (92)
93 2e6s_A E3 ubiquitin-protein li 83.0 0.29 1E-05 31.4 0.5 45 136-180 27-76 (77)
94 2kgg_A Histone demethylase jar 82.4 0.53 1.8E-05 27.6 1.4 43 137-179 4-52 (52)
95 2lv9_A Histone-lysine N-methyl 82.4 0.43 1.5E-05 32.0 1.1 46 134-180 27-75 (98)
96 2yt5_A Metal-response element- 82.3 0.52 1.8E-05 28.9 1.4 49 132-180 3-60 (66)
97 1wen_A Inhibitor of growth fam 81.5 0.75 2.6E-05 28.9 2.0 45 133-181 14-65 (71)
98 1xwh_A Autoimmune regulator; P 81.1 0.23 8E-06 30.7 -0.6 45 133-180 6-54 (66)
99 3asl_A E3 ubiquitin-protein li 80.7 0.29 9.9E-06 30.7 -0.2 45 137-181 20-69 (70)
100 1fp0_A KAP-1 corepressor; PHD 80.5 0.64 2.2E-05 30.6 1.4 46 132-180 22-71 (88)
101 2cs3_A Protein C14ORF4, MY039 79.3 1.1 3.8E-05 28.9 2.2 39 133-171 13-52 (93)
102 2lbm_A Transcriptional regulat 79.3 2.9 9.9E-05 29.9 4.7 47 132-181 60-117 (142)
103 2xb1_A Pygopus homolog 2, B-ce 77.8 1.5 5E-05 29.7 2.6 46 135-180 3-60 (105)
104 2ku3_A Bromodomain-containing 77.7 2.2 7.4E-05 26.7 3.2 49 132-180 13-65 (71)
105 2puy_A PHD finger protein 21A; 76.7 0.45 1.5E-05 28.7 -0.2 45 133-180 3-51 (60)
106 3v43_A Histone acetyltransfera 75.5 0.95 3.3E-05 30.9 1.2 44 137-180 63-111 (112)
107 2l43_A N-teminal domain from h 75.4 1.5 5.2E-05 28.6 2.1 49 132-180 22-74 (88)
108 3ql9_A Transcriptional regulat 74.9 2.2 7.7E-05 30.0 3.0 47 132-181 54-111 (129)
109 1zbd_B Rabphilin-3A; G protein 73.9 1.7 5.7E-05 30.8 2.1 34 133-166 53-88 (134)
110 3ask_A E3 ubiquitin-protein li 73.2 0.97 3.3E-05 35.0 0.8 47 135-181 174-225 (226)
111 2d8v_A Zinc finger FYVE domain 70.3 3.1 0.00011 25.7 2.4 33 132-168 5-38 (67)
112 2kwj_A Zinc finger protein DPF 70.0 3.4 0.00012 28.2 2.9 33 136-168 2-41 (114)
113 1wfk_A Zinc finger, FYVE domai 69.8 3.2 0.00011 27.0 2.7 36 132-167 6-42 (88)
114 4gne_A Histone-lysine N-methyl 69.5 2.2 7.6E-05 29.0 1.9 32 131-166 11-45 (107)
115 2rsd_A E3 SUMO-protein ligase 69.5 0.29 1E-05 30.4 -2.4 46 133-180 8-64 (68)
116 1wem_A Death associated transc 69.2 4.2 0.00014 25.5 3.1 46 134-180 15-69 (76)
117 1wyh_A SLIM 2, skeletal muscle 69.1 2.9 0.0001 25.4 2.3 27 137-164 7-33 (72)
118 3shb_A E3 ubiquitin-protein li 69.0 0.7 2.4E-05 29.6 -0.7 27 154-180 45-76 (77)
119 2zet_C Melanophilin; complex, 68.2 3.1 0.00011 30.1 2.5 33 133-165 66-100 (153)
120 3t7l_A Zinc finger FYVE domain 67.9 3.3 0.00011 27.0 2.4 37 133-169 18-55 (90)
121 1z2q_A LM5-1; membrane protein 67.4 4 0.00014 26.2 2.7 36 133-168 19-55 (84)
122 2vnf_A ING 4, P29ING4, inhibit 66.6 0.76 2.6E-05 27.8 -0.9 43 134-180 9-58 (60)
123 3c6w_A P28ING5, inhibitor of g 65.8 0.84 2.9E-05 27.5 -0.8 44 133-180 7-57 (59)
124 2dj7_A Actin-binding LIM prote 65.7 4 0.00014 25.7 2.4 39 134-182 14-52 (80)
125 3mjh_B Early endosome antigen 65.2 1.4 4.9E-05 23.6 0.2 14 133-146 3-16 (34)
126 2yw8_A RUN and FYVE domain-con 64.7 4.1 0.00014 26.0 2.4 36 133-168 17-53 (82)
127 2cu8_A Cysteine-rich protein 2 64.4 3.2 0.00011 25.6 1.7 27 136-164 10-36 (76)
128 1x63_A Skeletal muscle LIM-pro 64.3 4.2 0.00014 25.4 2.3 38 136-182 16-53 (82)
129 1joc_A EEA1, early endosomal a 63.7 4.3 0.00015 28.2 2.5 36 133-168 67-103 (125)
130 2o35_A Hypothetical protein DU 63.7 2.9 9.8E-05 28.0 1.4 12 159-170 42-53 (105)
131 1x4k_A Skeletal muscle LIM-pro 63.6 3.2 0.00011 25.2 1.6 10 137-146 7-16 (72)
132 3fyb_A Protein of unknown func 63.5 2.9 0.0001 27.9 1.4 12 159-170 41-52 (104)
133 1vfy_A Phosphatidylinositol-3- 63.5 4.8 0.00016 25.1 2.5 33 135-167 11-44 (73)
134 1x4u_A Zinc finger, FYVE domai 63.4 4.8 0.00016 25.8 2.5 35 133-167 12-47 (84)
135 1x61_A Thyroid receptor intera 63.2 4.2 0.00015 24.7 2.2 36 134-171 32-67 (72)
136 1iml_A CRIP, cysteine rich int 63.1 1.8 6.3E-05 26.8 0.4 46 134-183 26-72 (76)
137 1x4l_A Skeletal muscle LIM-pro 63.0 4.8 0.00016 24.4 2.4 28 136-164 6-35 (72)
138 2a20_A Regulating synaptic mem 62.7 0.3 1E-05 29.6 -3.2 48 133-180 7-59 (62)
139 1x62_A C-terminal LIM domain p 61.7 4.8 0.00016 25.1 2.2 38 134-182 14-51 (79)
140 1wev_A Riken cDNA 1110020M19; 61.3 2.2 7.6E-05 27.8 0.6 48 133-180 14-71 (88)
141 3o70_A PHD finger protein 13; 60.0 4.5 0.00015 25.0 1.8 47 133-180 17-66 (68)
142 1wew_A DNA-binding family prot 59.6 7.3 0.00025 24.5 2.8 47 133-180 14-71 (78)
143 1weo_A Cellulose synthase, cat 59.6 21 0.00071 23.4 4.9 49 134-182 15-68 (93)
144 1y02_A CARP2, FYVE-ring finger 59.0 0.87 3E-05 31.7 -1.9 46 133-178 17-63 (120)
145 1g47_A Pinch protein; LIM doma 58.4 4.9 0.00017 24.7 1.8 40 134-182 10-49 (77)
146 2dar_A PDZ and LIM domain prot 58.0 5.5 0.00019 25.4 2.1 27 135-164 25-51 (90)
147 2gmg_A Hypothetical protein PF 57.7 2.5 8.7E-05 28.6 0.4 29 150-183 67-95 (105)
148 1x68_A FHL5 protein; four-and- 56.1 4.9 0.00017 24.7 1.5 38 136-182 6-45 (76)
149 1x64_A Alpha-actinin-2 associa 55.1 7.6 0.00026 24.7 2.4 28 135-165 25-52 (89)
150 2jne_A Hypothetical protein YF 54.6 0.48 1.7E-05 31.7 -3.5 42 134-183 31-72 (101)
151 3zyq_A Hepatocyte growth facto 54.6 5.8 0.0002 30.4 2.0 35 134-168 163-198 (226)
152 1dvp_A HRS, hepatocyte growth 54.5 5.8 0.0002 30.1 2.0 35 134-168 160-195 (220)
153 2g6q_A Inhibitor of growth pro 54.0 1.8 6.3E-05 26.3 -0.8 43 134-180 10-59 (62)
154 2co8_A NEDD9 interacting prote 53.6 7.1 0.00024 24.5 2.0 39 134-182 14-52 (82)
155 2l3k_A Rhombotin-2, linker, LI 53.2 6.1 0.00021 26.9 1.8 35 135-170 36-70 (123)
156 3f6q_B LIM and senescent cell 52.1 6.2 0.00021 23.7 1.5 40 134-182 10-49 (72)
157 2d8x_A Protein pinch; LIM doma 51.5 5.6 0.00019 24.0 1.2 32 136-169 32-63 (70)
158 1wd2_A Ariadne-1 protein homol 51.4 3 0.0001 25.1 -0.1 38 134-171 5-47 (60)
159 2d8z_A Four and A half LIM dom 50.8 9.6 0.00033 22.8 2.2 32 136-169 32-63 (70)
160 2ct7_A Ring finger protein 31; 50.5 2.2 7.4E-05 27.6 -0.9 32 138-169 28-62 (86)
161 2l4z_A DNA endonuclease RBBP8, 50.0 6.9 0.00024 26.9 1.6 39 134-182 60-98 (123)
162 1wig_A KIAA1808 protein; LIM d 49.4 11 0.00039 23.0 2.4 32 136-168 32-63 (73)
163 1m3v_A FLIN4, fusion of the LI 48.6 11 0.00039 25.5 2.6 48 135-183 32-80 (122)
164 2jmo_A Parkin; IBR, E3 ligase, 48.1 1.6 5.4E-05 27.9 -1.8 20 155-176 55-74 (80)
165 2ehe_A Four and A half LIM dom 48.0 9.5 0.00032 23.7 1.9 38 136-182 16-53 (82)
166 2cor_A Pinch protein; LIM doma 46.9 12 0.0004 23.3 2.2 27 135-164 15-41 (79)
167 2pv0_B DNA (cytosine-5)-methyl 46.2 17 0.00058 30.3 3.6 46 132-180 90-147 (386)
168 1zfo_A LAsp-1; LIM domain, zin 46.1 11 0.00037 19.3 1.6 28 135-164 3-30 (31)
169 3a1b_A DNA (cytosine-5)-methyl 46.0 13 0.00046 26.9 2.7 38 131-171 75-114 (159)
170 1wee_A PHD finger family prote 45.2 7 0.00024 24.2 0.9 47 133-180 14-65 (72)
171 1m3v_A FLIN4, fusion of the LI 44.5 16 0.00056 24.7 2.9 39 134-182 4-42 (122)
172 1nyp_A Pinch protein; LIM doma 44.4 9.3 0.00032 22.6 1.4 25 137-164 7-31 (66)
173 2cur_A Skeletal muscle LIM-pro 44.3 7.9 0.00027 23.2 1.1 32 136-169 32-63 (69)
174 2d8y_A Eplin protein; LIM doma 44.0 12 0.0004 23.9 1.9 32 136-169 43-74 (91)
175 2xjy_A Rhombotin-2; oncoprotei 44.0 15 0.00052 24.9 2.7 8 157-164 87-94 (131)
176 2jrp_A Putative cytoplasmic pr 42.3 1.4 4.7E-05 28.5 -2.8 39 136-182 3-41 (81)
177 1a7i_A QCRP2 (LIM1); LIM domai 41.3 4.8 0.00016 25.1 -0.3 30 136-167 35-64 (81)
178 2egq_A FHL1 protein; LIM domai 40.8 9.6 0.00033 23.3 1.1 38 136-182 16-56 (77)
179 2cup_A Skeletal muscle LIM-pro 40.8 14 0.00049 23.8 2.0 46 134-183 32-77 (101)
180 1v6g_A Actin binding LIM prote 40.7 9 0.00031 23.8 0.9 36 136-182 16-51 (81)
181 3vhs_A ATPase wrnip1; zinc fin 39.9 8.5 0.00029 19.0 0.5 9 174-182 8-16 (29)
182 2jvx_A NF-kappa-B essential mo 39.6 5.9 0.0002 20.1 -0.1 9 173-181 4-12 (28)
183 2cuq_A Four and A half LIM dom 39.3 12 0.00042 23.0 1.4 31 136-168 42-72 (80)
184 2dlo_A Thyroid receptor-intera 36.8 9.8 0.00034 23.6 0.6 32 135-168 41-73 (81)
185 1j2o_A FLIN2, fusion of rhombo 36.3 20 0.0007 23.8 2.3 38 134-172 29-67 (114)
186 3mpx_A FYVE, rhogef and PH dom 36.1 7.6 0.00026 32.2 0.0 49 133-181 373-429 (434)
187 2csz_A Synaptotagmin-like prot 34.3 33 0.0011 21.7 2.8 34 132-165 22-57 (76)
188 2xqn_T Testin, TESS; metal-bin 33.9 31 0.0011 23.1 2.9 43 136-182 31-73 (126)
189 2iyb_E Testin, TESS, TES; LIM 33.7 12 0.00041 22.2 0.6 27 137-164 4-32 (65)
190 1loi_A Cyclic 3',5'-AMP specif 32.1 2.2 7.6E-05 20.6 -2.3 12 159-170 6-17 (26)
191 1rut_X Flinc4, fusion protein 32.0 15 0.00051 26.9 1.1 37 137-182 71-107 (188)
192 1x3h_A Leupaxin; paxillin fami 31.5 13 0.00045 22.8 0.6 30 136-167 42-71 (80)
193 3bbo_3 Ribosomal protein L33; 31.5 19 0.00066 22.1 1.3 15 170-184 47-61 (66)
194 6rxn_A Rubredoxin; electron tr 31.2 10 0.00036 21.5 0.1 8 174-181 32-39 (46)
195 1q2j_A MU-conotoxin SMIIIA; HE 28.8 23 0.00078 17.3 1.0 6 6-11 10-15 (26)
196 2jtn_A LIM domain-binding prot 28.2 29 0.00099 25.1 2.1 44 134-182 86-129 (182)
197 2jmi_A Protein YNG1, ING1 homo 28.0 18 0.00062 23.6 0.8 44 133-180 24-75 (90)
198 1b8t_A Protein (CRP1); LIM dom 27.9 22 0.00075 26.0 1.4 44 134-181 141-184 (192)
199 3o7a_A PHD finger protein 13 v 26.9 22 0.00074 20.3 0.9 41 140-180 8-51 (52)
200 3ph0_C ASCG; type III secretio 26.1 36 0.0012 20.3 1.8 17 157-173 18-36 (61)
201 2zjr_1 50S ribosomal protein L 25.6 13 0.00045 21.9 -0.2 15 170-184 36-50 (55)
202 2kpi_A Uncharacterized protein 24.1 40 0.0014 19.8 1.8 28 133-160 8-38 (56)
203 2ftc_P Mitochondrial ribosomal 22.6 15 0.00053 21.3 -0.3 16 169-184 33-48 (52)
204 1l8d_A DNA double-strand break 22.3 23 0.0008 23.5 0.5 8 135-142 47-54 (112)
205 2lcq_A Putative toxin VAPC6; P 22.0 27 0.00092 24.9 0.8 25 152-182 134-158 (165)
206 2kdx_A HYPA, hydrogenase/ureas 21.9 37 0.0013 22.9 1.5 24 152-181 75-99 (119)
207 3kqi_A GRC5, PHD finger protei 21.6 59 0.002 19.9 2.3 44 137-180 11-60 (75)
208 2lq6_A Bromodomain-containing 20.5 39 0.0013 21.6 1.3 33 134-167 16-50 (87)
209 1nkw_1 50S ribosomal protein L 20.3 22 0.00075 22.8 0.0 16 169-184 62-77 (82)
No 1
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.72 E-value=4.5e-18 Score=105.09 Aligned_cols=52 Identities=25% Similarity=0.752 Sum_probs=46.4
Q ss_pred CCCccccccccccCCCCCeEecC-CCCcccHhHHHHHHhCCCCCCccCCcccC
Q 030003 133 EEEDTCPICLEEYDTENPKLITK-CEHHFHLSCILEWNERSESCPICDQESLI 184 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~-C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~~ 184 (184)
+++..|+||++.|..++....++ |||.||..||.+|++++.+||+||+.+.|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~v 55 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSCC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeEC
Confidence 56778999999997666667776 99999999999999999999999999875
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-17 Score=108.33 Aligned_cols=52 Identities=27% Similarity=0.820 Sum_probs=46.7
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
..++..|+||++.|...+.++.++|+|.||..||.+|++.+.+||+||+.+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 3567789999999987777788999999999999999999999999999874
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=5.2e-17 Score=104.90 Aligned_cols=52 Identities=29% Similarity=0.701 Sum_probs=46.4
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.+++..|+||++.|..++.++.++|||.||..||.+|++.+.+||+||+.|.
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 3566789999999977677789999999999999999999999999999874
No 4
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.67 E-value=4.2e-17 Score=111.19 Aligned_cols=52 Identities=33% Similarity=0.733 Sum_probs=46.6
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.+++..|+||++.|..++.++.++|||.||..||.+|++.+.+||+||+.|.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 3567789999999987777788999999999999999999999999999874
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.9e-17 Score=106.04 Aligned_cols=51 Identities=31% Similarity=0.900 Sum_probs=45.8
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.++..|+||++.|.....+..++|+|.||..||.+|++.+.+||+||+.|.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 567789999999987677778899999999999999999999999999874
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=8.2e-17 Score=106.40 Aligned_cols=52 Identities=35% Similarity=0.818 Sum_probs=46.3
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
..++..|+||++.|.....++.++|+|.||..||.+|++.+.+||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 3567789999999986667788999999999999999999999999999874
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-16 Score=106.06 Aligned_cols=51 Identities=33% Similarity=0.791 Sum_probs=40.9
Q ss_pred CCCccccccccccCC-----------CC-CeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDT-----------EN-PKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~-----------~~-~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.+++.|+||++.|.. ++ .+++++|+|.||..||.+||+++.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 356678888888842 23 3355569999999999999999999999999875
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.63 E-value=2.3e-16 Score=97.20 Aligned_cols=50 Identities=32% Similarity=0.699 Sum_probs=43.9
Q ss_pred CCCccccccccccCC-CCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~-~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
.++..|+||++.|.. ++.++.++|||.||..||.+|++.+.+||+||+.|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 456789999999953 34568899999999999999999999999999986
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.62 E-value=1.8e-16 Score=111.04 Aligned_cols=53 Identities=26% Similarity=0.565 Sum_probs=44.8
Q ss_pred CCCCccccccccccCCC---------------CCeEecCCCCcccHhHHHHHHhCCCCCCccCCcccC
Q 030003 132 SEEEDTCPICLEEYDTE---------------NPKLITKCEHHFHLSCILEWNERSESCPICDQESLI 184 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~---------------~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~~ 184 (184)
..+++.|+||++.|... ..+++++|+|.||..||.+||+++.+||+||+.+.|
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 34678899999999632 236778999999999999999999999999998653
No 10
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.5e-16 Score=101.41 Aligned_cols=50 Identities=30% Similarity=0.487 Sum_probs=44.1
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.+++..|+||++.+. +++.+++|||.||..||.+|++.+.+||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 12 LTPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCGGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 356788999999997 67666799999999999999999999999999763
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.59 E-value=9.9e-16 Score=108.25 Aligned_cols=51 Identities=35% Similarity=0.726 Sum_probs=41.0
Q ss_pred CCCccccccccccCCCC---------------CeEecCCCCcccHhHHHHHH-----hCCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTEN---------------PKLITKCEHHFHLSCILEWN-----ERSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~---------------~~~~~~C~H~Fh~~CI~~Wl-----~~~~tCPvCR~~l~ 183 (184)
..++.|+||++.|.... .+.+++|+|.||..||.+|+ +.+.+||+||+.+.
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 45568999999995321 23488999999999999999 45779999998763
No 12
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.59 E-value=6.5e-16 Score=99.33 Aligned_cols=48 Identities=33% Similarity=0.854 Sum_probs=43.6
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
+++..|+||++.+. ++++.++|||.||..||.+|++.+.+||+||+.+
T Consensus 3 ~~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 3 TVAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhh
Confidence 45678999999996 6678999999999999999999999999999876
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=8.4e-16 Score=98.82 Aligned_cols=52 Identities=25% Similarity=0.668 Sum_probs=44.2
Q ss_pred CCCCccccccccccCC----CCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~----~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
..+...|+||++.|.. +..+++++|||.||..||.+|++.+.+||+||+.|.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3567789999999953 233488999999999999999999999999999863
No 14
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.57 E-value=7e-16 Score=99.89 Aligned_cols=51 Identities=25% Similarity=0.679 Sum_probs=44.1
Q ss_pred CCCccccccccccCC----CCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~----~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
+++..|+||++.|.. +..++.++|||.||..||.+|++.+.+||+||+.+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 567789999999953 244588999999999999999999999999999763
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=9.6e-16 Score=99.56 Aligned_cols=48 Identities=27% Similarity=0.577 Sum_probs=42.5
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.++..|+||++.+. ++ +.++|||.||..||.+|+....+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~--~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCV--HP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCS--SE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccC--CC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 56778999999995 55 67799999999999999999999999999863
No 16
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.55 E-value=3.2e-16 Score=111.41 Aligned_cols=66 Identities=27% Similarity=0.521 Sum_probs=7.5
Q ss_pred cchhhhhcccc---ccCCCCccccccccccCCC---------------CCeEecCCCCcccHhHHHHHHhCCCCCCccCC
Q 030003 119 RKSEVSQLNVF---AASEEEDTCPICLEEYDTE---------------NPKLITKCEHHFHLSCILEWNERSESCPICDQ 180 (184)
Q Consensus 119 ~~~~~~~~~~~---~~~~~~~~C~ICle~~~~~---------------~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~ 180 (184)
++.++++.... ....+++.|+||++.|... ..++.++|+|.||..||.+||+++.+||+||+
T Consensus 29 ~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~ 108 (117)
T 4a0k_B 29 KRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 108 (117)
T ss_dssp CSEEEEEEEEEEEEEECCCC------------------------------------------------------------
T ss_pred CceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCC
Confidence 33444444333 3344678899999999531 13355799999999999999999999999999
Q ss_pred cccC
Q 030003 181 ESLI 184 (184)
Q Consensus 181 ~l~~ 184 (184)
.+.|
T Consensus 109 ~~~~ 112 (117)
T 4a0k_B 109 EWEF 112 (117)
T ss_dssp ----
T ss_pred eeee
Confidence 8654
No 17
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.7e-15 Score=99.89 Aligned_cols=53 Identities=38% Similarity=0.881 Sum_probs=44.8
Q ss_pred cCCCCccccccccccCCCCCeEecCCC-----CcccHhHHHHHHhCCC--CCCccCCcccC
Q 030003 131 ASEEEDTCPICLEEYDTENPKLITKCE-----HHFHLSCILEWNERSE--SCPICDQESLI 184 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~-----H~Fh~~CI~~Wl~~~~--tCPvCR~~l~~ 184 (184)
...+++.|.||+++|..+++ +++||+ |.||..||.+||..+. +||+||+.+.+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCeEcCccccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567789999999987777 568996 9999999999998764 99999998754
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.54 E-value=1.8e-15 Score=95.79 Aligned_cols=50 Identities=26% Similarity=0.683 Sum_probs=42.9
Q ss_pred CCccccccccccCC----CCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 134 EEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 134 ~~~~C~ICle~~~~----~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
++..|+||++.+.. ++.++.++|||.||..||.+|++.+.+||+||+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 46789999999952 234488999999999999999999999999999763
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.5e-15 Score=98.71 Aligned_cols=47 Identities=43% Similarity=0.812 Sum_probs=42.2
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
++...|+||++.|. ++ ++++|||.||..||.+|++...+||+||+.+
T Consensus 13 ~~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 13 EIPFRCFICRQAFQ--NP-VVTKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CCCSBCSSSCSBCC--SE-EECTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCCCCCcCCCchhc--Ce-eEccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 45678999999995 66 6799999999999999999999999999875
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.53 E-value=4.8e-15 Score=97.07 Aligned_cols=49 Identities=24% Similarity=0.569 Sum_probs=42.1
Q ss_pred CCCCccccccccccCCCCCeEecC-CCCcccHhHHHHHHhCC--CCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITK-CEHHFHLSCILEWNERS--ESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~-C~H~Fh~~CI~~Wl~~~--~tCPvCR~~l~ 183 (184)
..++..|+||++.|. ++ +.++ |||.||..||.+|++.+ .+||+||+.++
T Consensus 12 ~~~~~~C~IC~~~~~--~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMT--DA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCT--TC-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHh--CC-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 356788999999996 77 5577 99999999999999865 69999999754
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=8.2e-15 Score=95.35 Aligned_cols=49 Identities=37% Similarity=0.826 Sum_probs=41.9
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHh---CCCCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---RSESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~---~~~tCPvCR~~l~ 183 (184)
.+++..|+||++.+. ++ +.++|||.||..||.+|++ ....||+||+.+.
T Consensus 17 ~~~~~~C~IC~~~~~--~~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 17 LQEEVICPICLDILQ--KP-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCBCTTTCSBCS--SE-EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CccCCEeccCCcccC--Ce-EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 356789999999996 55 6679999999999999997 4568999999874
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.52 E-value=2.5e-15 Score=109.84 Aligned_cols=47 Identities=38% Similarity=0.835 Sum_probs=42.3
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
+++..|+||++.|. ++ ++++|||.||..||..|+..+.+||+||+.+
T Consensus 51 ~~~~~C~iC~~~~~--~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 51 ENELQCIICSEYFI--EA-VTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp HHHSBCTTTCSBCS--SE-EEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred cccCCCcccCcccC--Cc-eECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 45678999999996 66 6789999999999999999999999999976
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=8.3e-15 Score=93.70 Aligned_cols=48 Identities=27% Similarity=0.570 Sum_probs=41.4
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHh-CCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE-RSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~-~~~tCPvCR~~l~ 183 (184)
.++..|+||++.+. ++ +.++|||.||..||.+|++ ...+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC--SP-KQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCCEECTTTCCEES--SC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CcCCCCCCCChHhc--Ce-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 56788999999996 66 5589999999999999994 5679999999864
No 24
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.51 E-value=3.7e-15 Score=103.23 Aligned_cols=49 Identities=29% Similarity=0.668 Sum_probs=42.9
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCC-CCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~-~tCPvCR~~l~ 183 (184)
.++..|+||++.|. +++..++|||.||..||.+|++.+ .+||+||+.+.
T Consensus 20 ~~~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 20 AEVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCCcccc--CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 46778999999996 775559999999999999999987 69999999763
No 25
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.5e-14 Score=97.25 Aligned_cols=52 Identities=27% Similarity=0.620 Sum_probs=43.6
Q ss_pred CCCCccccccccccCCCCC-eEecCCCCcccHhHHHHHHhCC---CCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENP-KLITKCEHHFHLSCILEWNERS---ESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~-~~~~~C~H~Fh~~CI~~Wl~~~---~tCPvCR~~l~ 183 (184)
..+...|+||++.|...+. .+.++|||.||..||.+|++.+ .+||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3567889999999964332 4788999999999999999876 79999999763
No 26
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.1e-15 Score=97.48 Aligned_cols=47 Identities=36% Similarity=0.943 Sum_probs=42.0
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.+...|+||++.+. + +.++|||.||..||.+|++++.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~--~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRA--D--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCC--S--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCCCeeCCcCcc--C--cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 56778999999996 3 78899999999999999999999999998763
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.49 E-value=1.4e-14 Score=95.56 Aligned_cols=49 Identities=29% Similarity=0.565 Sum_probs=42.8
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC-CCCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~tCPvCR~~l~ 183 (184)
..++..|+||++.|. ++ +.++|||.||..||.+|++. +.+||+||+.+.
T Consensus 5 ~~~~~~C~IC~~~~~--~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMK--DP-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCS--SE-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCcccccc--CC-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 356789999999996 67 66799999999999999987 789999999763
No 28
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.49 E-value=9e-15 Score=100.87 Aligned_cols=49 Identities=24% Similarity=0.637 Sum_probs=42.9
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.++..|+||++.|. +++.+++|||.||..||..|++.+.+||+||+.+.
T Consensus 20 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 20 DDLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 45678999999997 67555699999999999999999999999998763
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.6e-14 Score=89.83 Aligned_cols=45 Identities=40% Similarity=0.914 Sum_probs=38.6
Q ss_pred cCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHh---CCCCCCcc
Q 030003 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---RSESCPIC 178 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~---~~~tCPvC 178 (184)
..+++..|+||++.+. ++ +.++|||.||..||.+|++ ...+||+|
T Consensus 16 ~~~~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQ--KP-VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCS--SC-EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhC--Ce-EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3457789999999996 66 6679999999999999998 45689998
No 30
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.48 E-value=1.8e-14 Score=100.91 Aligned_cols=49 Identities=31% Similarity=0.676 Sum_probs=43.7
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.++..|+||++.|. +++.+++|||.||..||..|++.+.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 13 NPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGGTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCcCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 56788999999997 77666699999999999999999999999998763
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-14 Score=96.15 Aligned_cols=49 Identities=41% Similarity=0.802 Sum_probs=42.3
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC-------CCCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-------SESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-------~~tCPvCR~~l~ 183 (184)
.+++..|+||++.|. ++ +.++|||.||..||.+|++. ...||+||+.+.
T Consensus 9 ~~~~~~C~IC~~~~~--~p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLELLT--EP-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEECS--SC-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCcccC--Ce-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 356788999999996 66 56899999999999999987 568999999763
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=4.7e-14 Score=94.01 Aligned_cols=48 Identities=40% Similarity=0.816 Sum_probs=42.1
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC------CCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER------SESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~------~~tCPvCR~~l~ 183 (184)
.++..|+||++.|. ++ ++++|||.||..||..|++. ...||+||+.+.
T Consensus 17 ~~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 17 KEEVTCPICLELLK--EP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTTSCTTTCSCCS--SC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred ccCCCCcCCChhhC--cc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 56778999999996 66 57899999999999999987 679999999763
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.45 E-value=4.6e-14 Score=95.90 Aligned_cols=48 Identities=25% Similarity=0.569 Sum_probs=41.6
Q ss_pred CCCCccccccccccCCCCCeEecC-CCCcccHhHHHHHHhCC--CCCCccCCcc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITK-CEHHFHLSCILEWNERS--ESCPICDQES 182 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~-C~H~Fh~~CI~~Wl~~~--~tCPvCR~~l 182 (184)
..++..|+||++.|. ++ +.++ |||.||..||..|+..+ ..||+||+.+
T Consensus 10 ~~~~~~C~IC~~~~~--~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMT--DA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECS--SC-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhc--Cc-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 457789999999997 77 6678 99999999999999754 5999999986
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=6.5e-14 Score=93.31 Aligned_cols=48 Identities=40% Similarity=0.861 Sum_probs=42.0
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC------CCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER------SESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~------~~tCPvCR~~l~ 183 (184)
.+...|+||++.+. ++ +.++|||.||..||..|++. ...||+||+.+.
T Consensus 17 ~~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 17 KEEVTCPICLELLT--QP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCTTTCSCCS--SC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred cCCCCCCCCCcccC--Cc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 56788999999996 66 66799999999999999987 779999998764
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.43 E-value=7e-14 Score=89.06 Aligned_cols=50 Identities=24% Similarity=0.583 Sum_probs=39.4
Q ss_pred CCcccccccc-ccCC-CCCeEecCCCCcccHhHHHHHHhC-CCCCCccCCccc
Q 030003 134 EEDTCPICLE-EYDT-ENPKLITKCEHHFHLSCILEWNER-SESCPICDQESL 183 (184)
Q Consensus 134 ~~~~C~ICle-~~~~-~~~~~~~~C~H~Fh~~CI~~Wl~~-~~tCPvCR~~l~ 183 (184)
++..|+||++ .+.. ....++++|||.||..||.+|+.+ +..||+||+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 4568999999 7752 122357899999999999999765 468999999763
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=86.08 Aligned_cols=44 Identities=41% Similarity=1.030 Sum_probs=37.4
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHh---CCCCCCcc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---RSESCPIC 178 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~---~~~tCPvC 178 (184)
..++..|+||++.+. ++ ++++|||.||..||.+|++ ...+||+|
T Consensus 12 ~~~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLK--EP-VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCS--SC-CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccC--cc-EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 356778999999996 66 6689999999999999954 56799998
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.42 E-value=5.5e-14 Score=100.78 Aligned_cols=47 Identities=30% Similarity=0.547 Sum_probs=41.1
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCC-CCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~-tCPvCR~~l 182 (184)
+++..|+||++.|. ++ +.++|||.||..||..|+.... +||+||+.+
T Consensus 50 ~~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 50 EETFQCICCQELVF--RP-ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 97 (124)
T ss_dssp HHHTBCTTTSSBCS--SE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred ccCCCCCcCChHHc--Cc-EEeeCCCcccHHHHHHHHhHCcCCCCCCCccC
Confidence 46678999999996 66 6779999999999999998554 999999976
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.40 E-value=7.7e-14 Score=104.74 Aligned_cols=48 Identities=31% Similarity=0.736 Sum_probs=42.6
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC-CCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~tCPvCR~~l 182 (184)
.++..|+||++.|. +++.+++|||.||..||.+|+.. +.+||+||+.+
T Consensus 52 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 52 HSELMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HHHHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 45678999999997 77666799999999999999997 77899999876
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.39 E-value=1e-13 Score=99.70 Aligned_cols=51 Identities=25% Similarity=0.679 Sum_probs=43.6
Q ss_pred CCCccccccccccCC----CCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~----~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.++..|+||++.|.. +..++.++|||.||..||.+|++.+.+||+||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 466789999999952 234488999999999999999999999999999763
No 40
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=5.7e-13 Score=87.07 Aligned_cols=49 Identities=20% Similarity=0.529 Sum_probs=41.7
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCC--CCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS--ESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~--~tCPvCR~~l~ 183 (184)
+..+.|.||++.+..+ ..-..|+|.||..||.+||+.+ .+||+||+.+.
T Consensus 13 ~~i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 5567899999999743 3445999999999999999987 89999999875
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.36 E-value=2.3e-13 Score=95.51 Aligned_cols=48 Identities=35% Similarity=0.846 Sum_probs=40.9
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCC---CCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE---SCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~---tCPvCR~~l~ 183 (184)
.+...|+||++.+. ++ +.++|||.||..||..|+..+. +||+||+.+.
T Consensus 19 ~~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 19 QKILECPICLELIK--EP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HHHTSCSSSCCCCS--SC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred cCCCCCcccChhhc--Ce-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 34668999999996 66 5589999999999999998764 8999999763
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.36 E-value=7.3e-14 Score=98.79 Aligned_cols=47 Identities=30% Similarity=0.655 Sum_probs=41.3
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC-CCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~tCPvCR~~l 182 (184)
.++..|+||++.|. ++ +.++|||.||..||..|++. ..+||+||+.+
T Consensus 13 ~~~~~C~iC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 13 LSECQCGICMEILV--EP-VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp HHHHBCTTTCSBCS--SC-EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCCccCCcccC--ce-eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 46778999999996 67 66799999999999999977 66899999976
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.36 E-value=2.6e-13 Score=96.51 Aligned_cols=49 Identities=31% Similarity=0.662 Sum_probs=42.5
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCC-CCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~-tCPvCR~~l~ 183 (184)
.+++..|+||++.+. ++ +.++|||.||..||.+|++.+. +||+||+.+.
T Consensus 15 ~~~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 15 LESKYECPICLMALR--EA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCGGGBCTTTCSBCS--SE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCcCChhhc--Ce-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 356789999999996 66 6689999999999999998765 9999999763
No 44
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.35 E-value=5e-13 Score=89.83 Aligned_cols=47 Identities=19% Similarity=0.092 Sum_probs=42.9
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
.++..|+||++.+. +| ++++|||.|++.||.+|+....+||+||+.+
T Consensus 12 p~~~~CpI~~~~m~--dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 58 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT--DP-VRLPSGTVMDRSIILRHLLNSPTDPFNRQML 58 (85)
T ss_dssp CTTTBCTTTCSBCS--SE-EECTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred chheECcccCchhc--CC-eECCCCCEECHHHHHHHHhcCCCCCCCcCCC
Confidence 56789999999997 88 7778999999999999999889999999876
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.35 E-value=2.7e-13 Score=100.51 Aligned_cols=48 Identities=27% Similarity=0.526 Sum_probs=41.6
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCC-CCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~-tCPvCR~~l~ 183 (184)
.+...|+||++.|. ++ +.++|||.||..||..|+.... +||+||+.+.
T Consensus 76 ~~~~~C~IC~~~~~--~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 76 EQSFMCVCCQELVY--QP-VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HHHTBCTTTSSBCS--SE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCEeecCChhhc--CC-EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 45678999999996 66 6689999999999999998765 8999999764
No 46
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.34 E-value=6.7e-13 Score=87.79 Aligned_cols=50 Identities=20% Similarity=0.533 Sum_probs=40.1
Q ss_pred CCCCccccccccccCCCCCeEec--CCCCcccHhHHHHHHhC-CCCCCccCCcc
Q 030003 132 SEEEDTCPICLEEYDTENPKLIT--KCEHHFHLSCILEWNER-SESCPICDQES 182 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~--~C~H~Fh~~CI~~Wl~~-~~tCPvCR~~l 182 (184)
.+++..|+||++.+...+. ..+ +|||.||..||..|++. ...||+||+.+
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBC
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCcc
Confidence 3577889999999864444 344 59999999999999854 56899999975
No 47
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.32 E-value=1.2e-12 Score=90.34 Aligned_cols=48 Identities=15% Similarity=0.052 Sum_probs=43.5
Q ss_pred CCCccccccccccCCCCCeEecCCC-CcccHhHHHHHHhCCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCE-HHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~-H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.++..|+||++.|. +| ++++|| |.|++.||.+||....+||+||+.+.
T Consensus 20 p~~~~CpI~~~~m~--dP-V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC--DP-VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CTTTBCTTTCSBCS--SE-EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cHhcCCcCcccccc--CC-eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 56789999999997 88 778999 99999999999998889999999763
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.32 E-value=5.7e-13 Score=94.31 Aligned_cols=48 Identities=29% Similarity=0.631 Sum_probs=41.6
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC-CCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~tCPvCR~~l~ 183 (184)
.++..|+||++.+. ++ +.++|||.||..||.+|++. ..+||+||+.+.
T Consensus 21 ~~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 21 VKSISCQICEHILA--DP-VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHHTBCTTTCSBCS--SE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCCCCCCCCcHhc--Cc-EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 35678999999996 66 56899999999999999987 679999999763
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.31 E-value=8.4e-13 Score=94.85 Aligned_cols=52 Identities=25% Similarity=0.682 Sum_probs=44.3
Q ss_pred cCCCCccccccccccCC----CCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 131 ASEEEDTCPICLEEYDT----ENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~----~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
..++...|+||++.|.. +...+.++|||.||..||.+|++.+.+||+||+.+
T Consensus 68 i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp CSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred cCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 34677889999999952 23448889999999999999999999999999976
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.31 E-value=9.6e-13 Score=91.09 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=43.6
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
..++..|+||++.|. +| ++++|||.|++.||.+|+....+||+||+.+.
T Consensus 26 ~p~~~~CpI~~~~m~--dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 26 APDEFRDPLMDTLMT--DP-VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp CSTTTBCTTTCSBCS--SE-EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred CcHhhCCcCccCccc--CC-eECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 356889999999997 88 66779999999999999998899999999763
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.30 E-value=4.3e-13 Score=98.39 Aligned_cols=48 Identities=21% Similarity=0.543 Sum_probs=41.9
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCC-CCCccCCcc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQES 182 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~-tCPvCR~~l 182 (184)
.+++..|+||++.+. ++ +.++|||.||..||.+|++... +||+||+++
T Consensus 28 l~~~~~C~IC~~~~~--~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLR--RP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCS--SE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhc--Cc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 357789999999996 67 6689999999999999998765 899999865
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.29 E-value=1.4e-12 Score=83.03 Aligned_cols=48 Identities=25% Similarity=0.546 Sum_probs=40.7
Q ss_pred CCCccccccccccCCCCCeE-ecCCCCc-ccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKL-ITKCEHH-FHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~-~~~C~H~-Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
+++..|.||++.+. +.++ .+||||. ||..|+.+|++.+..||+||+.+
T Consensus 6 ~~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 6 NAIEPCVICQGRPK--NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp GGGSCCTTTSSSCS--CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred CCcCCCCcCCCCCC--CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 46678999999985 5533 2499999 89999999999999999999976
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.29 E-value=7.3e-13 Score=82.03 Aligned_cols=46 Identities=24% Similarity=0.473 Sum_probs=39.4
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
..++..|+||++.|. ++ ++++|||.||..||..| ...||+||+.+.
T Consensus 3 e~~~~~C~IC~~~~~--~p-~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAEAK--CP-KLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSSCB--CC-SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred cccCCCceEeCCccC--Ce-EEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 356788999999996 66 77899999999999885 568999999874
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=7e-13 Score=94.12 Aligned_cols=47 Identities=26% Similarity=0.613 Sum_probs=40.6
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.++..|+||++.|. +++++.+|||.||..||..|+. ..||+||+.+.
T Consensus 20 ~~~~~C~IC~~~~~--~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCS--SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhh--CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 46788999999996 7755459999999999999998 78999998763
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.23 E-value=3.9e-12 Score=80.65 Aligned_cols=48 Identities=21% Similarity=0.506 Sum_probs=40.4
Q ss_pred CCCccccccccccCCCCCe-EecCCCCc-ccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPK-LITKCEHH-FHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~~~C~H~-Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
+.+..|.||++.+. +.+ +.+||||. ||..|+.+|.+.+..||+||+.+
T Consensus 5 ~~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 5 NLLKPCSLCEKRPR--DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GGGSBCTTTSSSBS--CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred CcCCCCcccCCcCC--CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 45678999999885 443 23499998 99999999999889999999976
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.20 E-value=2.9e-12 Score=83.73 Aligned_cols=43 Identities=26% Similarity=0.610 Sum_probs=37.4
Q ss_pred CCCccccccccccCCCCCeEecCCCCc-ccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
+++..|+||++.+. ++ +.++|||. ||..|+..| ..||+||+.+
T Consensus 22 ~~~~~C~iC~~~~~--~~-~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i 65 (74)
T 4ic3_A 22 QEEKLCKICMDRNI--AI-VFVPCGHLVTCKQCAEAV----DKCPMCYTVI 65 (74)
T ss_dssp HHHTBCTTTSSSBC--CE-EEETTCCBCCCHHHHTTC----SBCTTTCCBC
T ss_pred ccCCCCCCCCCCCC--CE-EEcCCCChhHHHHhhhcC----ccCCCcCcCc
Confidence 35678999999985 55 77899999 999999999 7899999976
No 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=8.3e-12 Score=85.30 Aligned_cols=48 Identities=29% Similarity=0.558 Sum_probs=40.1
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCC------CCCCc--cCCc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS------ESCPI--CDQE 181 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~------~tCPv--CR~~ 181 (184)
..++..|+||++.|. +|++...|||+|+..||.+||... .+||+ |++.
T Consensus 4 ~~~~~~CPI~~~~~~--dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMK--KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCS--SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhc--CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 356789999999997 885544699999999999999864 49999 9865
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.16 E-value=1.9e-11 Score=102.81 Aligned_cols=47 Identities=32% Similarity=0.736 Sum_probs=41.1
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHh-CCCCCCccCCccc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE-RSESCPICDQESL 183 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~-~~~tCPvCR~~l~ 183 (184)
....|+||++.+. ++ +.++|||.||..||..|+. .+.+||+||+.+.
T Consensus 331 ~~~~C~ICle~~~--~p-v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 331 TFQLCKICAENDK--DV-KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSSBCTTTSSSBC--CE-EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCcCCC--Ce-EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 3468999999994 44 8899999999999999998 7889999999763
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.15 E-value=1.4e-11 Score=92.75 Aligned_cols=50 Identities=30% Similarity=0.651 Sum_probs=42.6
Q ss_pred cCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCC-CCCccCCccc
Q 030003 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE-SCPICDQESL 183 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~-tCPvCR~~l~ 183 (184)
..++...|+||++.+. ++ +.++|||.||..||.+|++.+. +||+||+.+.
T Consensus 14 ~~~~~~~C~IC~~~~~--~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 14 PLESKYECPICLMALR--EA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCCGGGBCTTTCSBCS--SE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCChhhc--Cc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 3467789999999996 66 6689999999999999998754 9999998763
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.10 E-value=3.8e-11 Score=96.35 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=42.1
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCC-CCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~-~tCPvCR~~l~ 183 (184)
..+...|+||++.+. +| ++++|||+||..||.+|+... .+||+||.++.
T Consensus 205 ~~~~~~c~i~~~~~~--dP-v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFELMR--EP-CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSBCS--SE-EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCcccCCcCcCCHhc--CC-eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 346788999999997 88 778899999999999999864 45999999763
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.6e-11 Score=79.30 Aligned_cols=43 Identities=26% Similarity=0.622 Sum_probs=35.8
Q ss_pred CCCccccccccccCCCCCeEecCCCCc-ccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
+++..|+||++.+. ++ ++++|||. ||..|+.. ...||+||+.+
T Consensus 23 ~~~~~C~IC~~~~~--~~-~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i 66 (75)
T 2ecg_A 23 QEEKLCKICMDRNI--AI-VFVPCGHLVTCKQCAEA----VDKCPMCYTVI 66 (75)
T ss_dssp HHHHSCSSSCSSCC--CB-CCSSSCCCCBCHHHHHH----CSBCTTTCCBC
T ss_pred CCCCCCCcCCCCCC--CE-EEecCCCHHHHHHHhhC----CCCCccCCcee
Confidence 35568999999985 55 77999999 99999964 36899999876
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.01 E-value=1.8e-10 Score=87.45 Aligned_cols=50 Identities=18% Similarity=0.095 Sum_probs=42.7
Q ss_pred cCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCC-CCCCccCCccc
Q 030003 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS-ESCPICDQESL 183 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~-~tCPvCR~~l~ 183 (184)
...+...||||++.|. +| ++++|||+|+..||..|+... .+||+||.++.
T Consensus 102 ~ip~~f~CPI~~elm~--DP-V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 102 EIPDYLCGKISFELMR--EP-CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCCGGGBCTTTCSBCS--SE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCcHhhcccCccccCC--CC-eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 3457789999999997 88 667999999999999999874 47999998763
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.01 E-value=1.4e-10 Score=92.48 Aligned_cols=50 Identities=32% Similarity=0.642 Sum_probs=43.7
Q ss_pred cCCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCC--CCCCc--cCCcc
Q 030003 131 ASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS--ESCPI--CDQES 182 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~--~tCPv--CR~~l 182 (184)
....+..||||++.|. +||+.+.|||.||+.||..|++.. .+||+ ||+.+
T Consensus 177 ~~~~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l 230 (267)
T 3htk_C 177 GGKIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVV 230 (267)
T ss_dssp SSBCCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEE
T ss_pred CCceeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcC
Confidence 3467889999999997 997778999999999999999864 47999 99865
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.01 E-value=2.4e-10 Score=71.65 Aligned_cols=49 Identities=31% Similarity=0.605 Sum_probs=39.5
Q ss_pred CCCccccccccccCCCCCeEecCCC--C---cccHhHHHHHHhC--CCCCCccCCcccC
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCE--H---HFHLSCILEWNER--SESCPICDQESLI 184 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~--H---~Fh~~CI~~Wl~~--~~tCPvCR~~l~~ 184 (184)
++...|.||+++.. ++ .++||. | .||..||.+|+.. +.+||+|+..+.+
T Consensus 4 ~~~~~CrIC~~~~~--~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS--CC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC--Cc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 56778999999853 45 468865 4 9999999999975 5789999998754
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.8e-10 Score=73.13 Aligned_cols=44 Identities=25% Similarity=0.597 Sum_probs=37.0
Q ss_pred CCCccccccccccCCCCCeEecCCCCc-ccHhHHHHHHhCCCCCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
+++..|.||++.+. + ++++||||. ||..|+.. ...||+||+.|.
T Consensus 13 ~~~~~C~IC~~~~~--~-~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV--N-WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSCC--C-CEETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCCCcCcCCC--C-EEEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 45678999999884 4 489999999 99999984 478999999763
No 66
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.97 E-value=1.2e-10 Score=95.94 Aligned_cols=52 Identities=27% Similarity=0.533 Sum_probs=40.2
Q ss_pred CCCCccccccccccCCCCCe-----EecCCCCcccHhHHHHHHhCC-----------CCCCccCCccc
Q 030003 132 SEEEDTCPICLEEYDTENPK-----LITKCEHHFHLSCILEWNERS-----------ESCPICDQESL 183 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~-----~~~~C~H~Fh~~CI~~Wl~~~-----------~tCPvCR~~l~ 183 (184)
.+....|+||++.+..+..+ ...+|+|.||..||.+||+.. .+||.||++|.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 35667899999999642221 135899999999999999752 47999999874
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.96 E-value=9e-11 Score=77.62 Aligned_cols=42 Identities=33% Similarity=0.673 Sum_probs=36.0
Q ss_pred CCccccccccccCCCCCeEecCCCCc-ccHhHHHHHHhCCCCCCccCCcc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
++..|+||++.+. + .+.+||||. ||..|+..|. .||+||+.+
T Consensus 17 ~~~~C~IC~~~~~--~-~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i 59 (79)
T 2yho_A 17 EAMLCMVCCEEEI--N-STFCPCGHTVCCESCAAQLQ----SCPVCRSRV 59 (79)
T ss_dssp HHTBCTTTSSSBC--C-EEEETTCBCCBCHHHHTTCS----BCTTTCCBC
T ss_pred CCCEeEEeCcccC--c-EEEECCCCHHHHHHHHHhcC----cCCCCCchh
Confidence 4568999999984 4 488999999 9999998873 899999976
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.90 E-value=5.2e-10 Score=70.31 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=40.9
Q ss_pred CccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
...|+|+++.+. +|++..++||+|.+.||.+|++.+.+||+.++++.
T Consensus 3 ~~~CpIs~~~m~--dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCS--SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCC--CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 367999999997 88555599999999999999998889999998763
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=5.5e-10 Score=75.98 Aligned_cols=49 Identities=31% Similarity=0.708 Sum_probs=38.6
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC--------CCCCCc--cCCc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER--------SESCPI--CDQE 181 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~--------~~tCPv--CR~~ 181 (184)
.+...|+||++.+...+...+++|||.||..|+..|++. .-.||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 356789999999964344344689999999999999874 137999 9987
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.78 E-value=8.9e-10 Score=91.69 Aligned_cols=43 Identities=28% Similarity=0.681 Sum_probs=37.7
Q ss_pred CCCccccccccccCCCCCeEecCCCCc-ccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHH-FHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~-Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
+++..|+||++.+. ++ +.+||||. ||..|+..| ..||+||+.+
T Consensus 293 ~~~~~C~IC~~~~~--~~-v~lpCgH~~fC~~C~~~~----~~CP~CR~~i 336 (345)
T 3t6p_A 293 QEERTCKVCMDKEV--SV-VFIPCGHLVVCQECAPSL----RKCPICRGII 336 (345)
T ss_dssp HTTCBCTTTSSSBC--CE-EEETTCCEEECTTTGGGC----SBCTTTCCBC
T ss_pred cCCCCCCccCCcCC--ce-EEcCCCChhHhHHHHhcC----CcCCCCCCCc
Confidence 46788999999995 55 77799999 999999988 6899999976
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.57 E-value=3.3e-08 Score=67.20 Aligned_cols=45 Identities=20% Similarity=0.483 Sum_probs=38.0
Q ss_pred cccccccccCCCCCeEecCCCCcccHhHHHHHHhC-CCCCCccCCccc
Q 030003 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-SESCPICDQESL 183 (184)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-~~tCPvCR~~l~ 183 (184)
.|++|--.+. ...++.||.|.||.+|+..|.++ .++||+|+..|.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 4888887775 55689999999999999999865 679999998764
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.07 E-value=2.6e-06 Score=67.29 Aligned_cols=49 Identities=20% Similarity=0.527 Sum_probs=39.5
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCC--CCCccCCccc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSE--SCPICDQESL 183 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~--tCPvCR~~l~ 183 (184)
+....|.||.+.... .+.-..|+|.||..|+.+|++.+. .||.|+..+.
T Consensus 178 ~~i~~C~iC~~iv~~--g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 178 DAVKICNICHSLLIQ--GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TTCCBCTTTCSBCSS--CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCCcCcchhhHHhC--CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 356789999999974 334445999999999999998754 9999998763
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.01 E-value=0.00016 Score=48.36 Aligned_cols=45 Identities=27% Similarity=0.539 Sum_probs=37.2
Q ss_pred CCCccccccccccCCCCCeEecCC-CCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKC-EHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C-~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
-.-..|-.|+-.. . .+..| .|.+|+.|+...|.+++.||+|.++|
T Consensus 26 ~G~~nCKsCWf~~----k-~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pL 71 (99)
T 2ko5_A 26 LGPQFCKSCWFEN----K-GLVECNNHYLCLNCLTLLLSVSNRCPICKMPL 71 (99)
T ss_dssp SCCCCCCSSCSCC----S-SEEECSSCEEEHHHHHHTCSSSSEETTTTEEC
T ss_pred cCcccChhhcccc----C-CeeeecchhhHHHHHHHHHhhccCCcccCCcC
Confidence 4556799999875 2 45555 59999999999999999999999865
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.77 E-value=0.00071 Score=45.79 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=25.7
Q ss_pred CCccccccccccCCCCCeEe--cCCCCcccHhHHHHH
Q 030003 134 EEDTCPICLEEYDTENPKLI--TKCEHHFHLSCILEW 168 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~--~~C~H~Fh~~CI~~W 168 (184)
++..|.||++.+. .+.+. +.|+|.||..|+..|
T Consensus 2 ee~~C~~C~~~~~--~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPA--QDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSC--CBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCC--CCceEECCcCChHHhHHHCHHH
Confidence 4578999998753 22234 999999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.34 E-value=0.034 Score=34.77 Aligned_cols=46 Identities=20% Similarity=0.485 Sum_probs=33.9
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCC----CCCCccCCc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQE 181 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~----~tCPvCR~~ 181 (184)
.....|.||.+. ++-+.--.|...||..|+...|... =.||.|+..
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 355679999864 3444555799999999998877653 279999764
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.57 E-value=0.018 Score=35.58 Aligned_cols=49 Identities=27% Similarity=0.539 Sum_probs=33.5
Q ss_pred CCCCccccccccccCCCC-CeEecCCCCcccHhHHHHHHh-----CCCCCCccCC
Q 030003 132 SEEEDTCPICLEEYDTEN-PKLITKCEHHFHLSCILEWNE-----RSESCPICDQ 180 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~-~~~~~~C~H~Fh~~CI~~Wl~-----~~~tCPvCR~ 180 (184)
.++...|+||...+..+. -+.--.|...||..|+.--.. ..-.||.|+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 456778999999885322 233346889999999864322 2457999964
No 77
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=92.16 E-value=0.054 Score=37.15 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=29.5
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHh
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE 170 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~ 170 (184)
..+++.|.||.+.-..++-+.-..|+..||..|+..++.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 357889999988754333355578999999999987664
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=91.67 E-value=0.034 Score=35.44 Aligned_cols=49 Identities=20% Similarity=0.420 Sum_probs=33.0
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC----CCCCCccCCc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQE 181 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~tCPvCR~~ 181 (184)
.+...|.||......+.-+.--.|.-.||..|+..-... .-.||.|+..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 455679999887642233344468899999999754432 3379999654
No 79
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=91.65 E-value=0.14 Score=47.55 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=42.4
Q ss_pred cCCCCccccccccccCCCCCeEecCCC-CcccHhHHHHHHhCCCCCCccCCcc
Q 030003 131 ASEEEDTCPICLEEYDTENPKLITKCE-HHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~~C~-H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
..-++..|||=++.+. +| ++++-| ++|-+..|.+|+....+||+=|+++
T Consensus 887 ~iP~~F~cPIs~~lM~--DP-VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L 936 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMK--DP-VILPASKMNIDRSTIKAHLLSDSTDPFNRMPL 936 (968)
T ss_dssp CSCGGGBCTTTCSBCS--SE-EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCcHHhCCcchhhHHh--CC-eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCC
Confidence 3456788999999997 88 778887 6999999999999999999988765
No 80
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.04 E-value=0.31 Score=31.83 Aligned_cols=35 Identities=20% Similarity=0.512 Sum_probs=23.2
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHH
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW 168 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~W 168 (184)
..++.|.||-- +..++..----|+-.||..|+.+-
T Consensus 13 ~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 46788999953 221122122347899999999986
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=90.52 E-value=0.12 Score=31.63 Aligned_cols=47 Identities=28% Similarity=0.702 Sum_probs=33.1
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC----CCCCCccCCc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQE 181 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~tCPvCR~~ 181 (184)
...+..|.||... ++-+.--.|...||..|+..-+.. .-.||.|++.
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3567789999874 244344568899999999875433 2279999753
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.51 E-value=0.16 Score=29.61 Aligned_cols=45 Identities=24% Similarity=0.616 Sum_probs=30.3
Q ss_pred cccccccccCCCCCeEecCCCCcccHhHHHHHHhC----CCCCCccCCc
Q 030003 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQE 181 (184)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~tCPvCR~~ 181 (184)
.|.||...-..++-+.--.|...||..|+..=+.. .-.||.|+..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 58899876543344455578999999999643332 1269999753
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=89.84 E-value=0.084 Score=32.30 Aligned_cols=47 Identities=17% Similarity=0.460 Sum_probs=32.4
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC----CCCCCccCCcc
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQES 182 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~tCPvCR~~l 182 (184)
.++..|.||.+. ++-+.--.|...||..|+..-+.. .=.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 467789999863 244344468899999999854433 12699997653
No 84
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=88.00 E-value=0.45 Score=29.44 Aligned_cols=35 Identities=26% Similarity=0.591 Sum_probs=23.8
Q ss_pred CCCCccccccccccCCCCCeE-ec-CCCCcccHhHHH
Q 030003 132 SEEEDTCPICLEEYDTENPKL-IT-KCEHHFHLSCIL 166 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~-~~-~C~H~Fh~~CI~ 166 (184)
.+....|++|...+..+...+ -- .|.-.||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 356678999999986544433 33 789999999974
No 85
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=87.66 E-value=0.24 Score=30.13 Aligned_cols=43 Identities=23% Similarity=0.519 Sum_probs=31.4
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCcc
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPIC 178 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvC 178 (184)
..|--|+..|.......-..|+++||.+|=.-.-+.-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999998522223467899999999965545566789988
No 86
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=86.86 E-value=0.51 Score=39.21 Aligned_cols=47 Identities=23% Similarity=0.495 Sum_probs=34.9
Q ss_pred CCccccccccccCCCCCeEecCCCCc--ccHhHHHHHHhCC--CCCCccCCcc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHH--FHLSCILEWNERS--ESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~--Fh~~CI~~Wl~~~--~tCPvCR~~l 182 (184)
-...|||=+..+. .|+.-..|.|. |-+.=+....++. -.||+|.+.+
T Consensus 248 vSL~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 248 MSLQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp EESBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred EeecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 4478999988887 89999999998 5544444444333 3799999876
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.57 E-value=0.067 Score=32.08 Aligned_cols=46 Identities=26% Similarity=0.593 Sum_probs=32.2
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCC----CCCCccCC
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQ 180 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~----~tCPvCR~ 180 (184)
..+++.|.||... ++-+.--.|...||..|+..-+... -.||.|++
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4567889999875 2444555789999999998544332 25888854
No 88
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=86.35 E-value=0.58 Score=38.71 Aligned_cols=48 Identities=27% Similarity=0.552 Sum_probs=36.0
Q ss_pred CCccccccccccCCCCCeEecCCCCc--ccHhHHHHHHhCC--CCCCccCCccc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHH--FHLSCILEWNERS--ESCPICDQESL 183 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~--Fh~~CI~~Wl~~~--~tCPvCR~~l~ 183 (184)
-...|||=+..+. .|++-..|.|. |-+.=+..+.++. -.||+|.+.+.
T Consensus 214 vSL~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 214 VSLMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EESBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EeeeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 3467999988887 89899999999 6655555554443 37999998763
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=86.24 E-value=1.4 Score=29.97 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=24.1
Q ss_pred CCCcccccccccc------CCCCCeEecCCCCcccHhHHH
Q 030003 133 EEEDTCPICLEEY------DTENPKLITKCEHHFHLSCIL 166 (184)
Q Consensus 133 ~~~~~C~ICle~~------~~~~~~~~~~C~H~Fh~~CI~ 166 (184)
+....|.+|+..- ..++-+.-..|+..||..|+.
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3567899998753 222344556799999999995
No 90
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.94 E-value=0.6 Score=29.84 Aligned_cols=48 Identities=25% Similarity=0.447 Sum_probs=30.8
Q ss_pred CCCccccccccccCC-CCCeEecCCCCcccHhHHHHHHh-----CCCCCCccCCc
Q 030003 133 EEEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNE-----RSESCPICDQE 181 (184)
Q Consensus 133 ~~~~~C~ICle~~~~-~~~~~~~~C~H~Fh~~CI~~Wl~-----~~~tCPvCR~~ 181 (184)
.+...| ||...+.. +.-+.--.|...||..|+.---. ....||.|+..
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 344556 99988742 23333346889999999852211 24589999864
No 91
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.49 E-value=0.61 Score=30.89 Aligned_cols=45 Identities=27% Similarity=0.551 Sum_probs=28.2
Q ss_pred CCCccccccccccCCCCCeEecC--CC-CcccHhHHHHHHhC----CCCCCccCCc
Q 030003 133 EEEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQE 181 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~--C~-H~Fh~~CI~~Wl~~----~~tCPvCR~~ 181 (184)
.+...| ||..... +.-+.--. |. ..||..|+. |.. +-.||.|++.
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 345567 9988653 22222223 55 689999996 332 2379999764
No 92
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.41 E-value=0.091 Score=34.96 Aligned_cols=48 Identities=19% Similarity=0.504 Sum_probs=31.8
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC----CCCCCccCC
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQ 180 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~tCPvCR~ 180 (184)
.+...|.||...-..+.-+.--.|...||..|+..=|.. .=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 466789999987543334444578999999998733322 125888854
No 93
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.02 E-value=0.29 Score=31.36 Aligned_cols=45 Identities=20% Similarity=0.531 Sum_probs=29.1
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhC-----CCCCCccCC
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-----SESCPICDQ 180 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-----~~tCPvCR~ 180 (184)
..|.||...-..++-+.--.|...||..|+..=|.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 378889865332333344478899999999843322 126999875
No 94
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=82.43 E-value=0.53 Score=27.58 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=28.0
Q ss_pred cccccccccCCCCCe-Eec-CCCCcccHhHHHHH----HhCCCCCCccC
Q 030003 137 TCPICLEEYDTENPK-LIT-KCEHHFHLSCILEW----NERSESCPICD 179 (184)
Q Consensus 137 ~C~ICle~~~~~~~~-~~~-~C~H~Fh~~CI~~W----l~~~~tCPvCR 179 (184)
.|.||...+..+... .-- .|.-.||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 478998888543332 223 58889999997521 12456899885
No 95
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=82.39 E-value=0.43 Score=31.96 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=30.3
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC---CCCCCccCC
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER---SESCPICDQ 180 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~---~~tCPvCR~ 180 (184)
+...| ||-.....+.-+.--.|.-.||..|+..=+.. .-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 89776654444444578899999998643222 237999974
No 96
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=82.28 E-value=0.52 Score=28.90 Aligned_cols=49 Identities=27% Similarity=0.536 Sum_probs=32.2
Q ss_pred CCCCccccccccccCC--CCCeEecCCCCcccHhHHHHHHh-------CCCCCCccCC
Q 030003 132 SEEEDTCPICLEEYDT--ENPKLITKCEHHFHLSCILEWNE-------RSESCPICDQ 180 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~--~~~~~~~~C~H~Fh~~CI~~Wl~-------~~~tCPvCR~ 180 (184)
..++..|.||...... ++-+.--.|.-.||..|+..-+. ..-.|+.|+.
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 3567889999987532 23333347889999999875331 1236888854
No 97
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=81.51 E-value=0.75 Score=28.89 Aligned_cols=45 Identities=27% Similarity=0.551 Sum_probs=27.8
Q ss_pred CCCccccccccccCCCCCeEecC--CC-CcccHhHHHHHHhC----CCCCCccCCc
Q 030003 133 EEEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQE 181 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~--C~-H~Fh~~CI~~Wl~~----~~tCPvCR~~ 181 (184)
.+...| ||..... +.-+.--. |. ..||..|+. |.. .-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 455667 8988653 22212223 55 699999996 333 2379999764
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=81.10 E-value=0.23 Score=30.70 Aligned_cols=45 Identities=27% Similarity=0.586 Sum_probs=31.3
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC----CCCCCccCC
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQ 180 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~tCPvCR~ 180 (184)
.+++.|.||.+. ++-+.--.|...||..|+..-+.. .-.||.|..
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 567889999864 244455578899999999754432 125888853
No 99
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=80.74 E-value=0.29 Score=30.74 Aligned_cols=45 Identities=22% Similarity=0.597 Sum_probs=26.3
Q ss_pred cccccccccCCCCCeEecCCCCcccHhHHHHHHhC-----CCCCCccCCc
Q 030003 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-----SESCPICDQE 181 (184)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-----~~tCPvCR~~ 181 (184)
.|.||...-..++-+.--.|...||..|+..=|.. .=.||.|+..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 35566643222222233368899999999843332 2269999754
No 100
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.46 E-value=0.64 Score=30.61 Aligned_cols=46 Identities=26% Similarity=0.622 Sum_probs=32.7
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCC----CCCCccCC
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERS----ESCPICDQ 180 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~----~tCPvCR~ 180 (184)
..+++.|.||...- +-+.--.|.-.||..|+..=+... -.||.|+.
T Consensus 22 d~n~~~C~vC~~~g---~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 22 DDSATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSCCSSSCSSS---CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCCCcCcCcCCCC---CEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 35677899999752 444445688999999996655431 26999974
No 101
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=79.35 E-value=1.1 Score=28.93 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=28.0
Q ss_pred CCCccccccccccCCCCCeEec-CCCCcccHhHHHHHHhC
Q 030003 133 EEEDTCPICLEEYDTENPKLIT-KCEHHFHLSCILEWNER 171 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~-~C~H~Fh~~CI~~Wl~~ 171 (184)
.....|.+|.+.++...-+.-. .=.|.||..|-...+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4567899999999744442111 12699999999998875
No 102
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=79.32 E-value=2.9 Score=29.93 Aligned_cols=47 Identities=28% Similarity=0.463 Sum_probs=34.0
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHHh---------C--CCCCCccCCc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---------R--SESCPICDQE 181 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~---------~--~~tCPvCR~~ 181 (184)
...++.|.||.+.- +-+.--.|-..||..||..-+. . .=.||+|+..
T Consensus 60 Dg~~d~C~vC~~GG---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCCS---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCCC---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 35678899999764 4434457889999999997653 1 2279999853
No 103
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=77.76 E-value=1.5 Score=29.70 Aligned_cols=46 Identities=20% Similarity=0.481 Sum_probs=30.6
Q ss_pred CccccccccccCCCCCeEec--CCCCcccHhHHHHH------H----hCCCCCCccCC
Q 030003 135 EDTCPICLEEYDTENPKLIT--KCEHHFHLSCILEW------N----ERSESCPICDQ 180 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~--~C~H~Fh~~CI~~W------l----~~~~tCPvCR~ 180 (184)
...|+||...|......+.- .|.-.||..|+.-= | ...-.||.|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 45799999998544333332 68899999998521 1 02347999864
No 104
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=77.72 E-value=2.2 Score=26.73 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=30.8
Q ss_pred CCCCcccccccccc-CCCCC-eEecCCCCcccHhHHHHHHhC--CCCCCccCC
Q 030003 132 SEEEDTCPICLEEY-DTENP-KLITKCEHHFHLSCILEWNER--SESCPICDQ 180 (184)
Q Consensus 132 ~~~~~~C~ICle~~-~~~~~-~~~~~C~H~Fh~~CI~~Wl~~--~~tCPvCR~ 180 (184)
..+++.|.||.+.- ..++. +.--.|.-.||..|+..-..- .=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 45778899998764 22233 233468899999998642211 125877753
No 105
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=76.68 E-value=0.45 Score=28.71 Aligned_cols=45 Identities=24% Similarity=0.578 Sum_probs=31.0
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC----CCCCCccCC
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER----SESCPICDQ 180 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~----~~tCPvCR~ 180 (184)
..++.|.||... ++-+.--.|...||..|+..-+.. .-.||.|+.
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 356789999874 244455578999999999754432 125888854
No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=75.52 E-value=0.95 Score=30.88 Aligned_cols=44 Identities=27% Similarity=0.585 Sum_probs=28.2
Q ss_pred cccccccccC-CCCCeEecCCCCcccHhHHHHHHhCC----CCCCccCC
Q 030003 137 TCPICLEEYD-TENPKLITKCEHHFHLSCILEWNERS----ESCPICDQ 180 (184)
Q Consensus 137 ~C~ICle~~~-~~~~~~~~~C~H~Fh~~CI~~Wl~~~----~tCPvCR~ 180 (184)
.|.||.+.-. .++-+.--.|...||..|+..-|... =.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5777776432 22333334689999999997544431 27999985
No 107
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=75.43 E-value=1.5 Score=28.62 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=30.5
Q ss_pred CCCCccccccccccC-C-CCCeEecCCCCcccHhHHHHHHhC--CCCCCccCC
Q 030003 132 SEEEDTCPICLEEYD-T-ENPKLITKCEHHFHLSCILEWNER--SESCPICDQ 180 (184)
Q Consensus 132 ~~~~~~C~ICle~~~-~-~~~~~~~~C~H~Fh~~CI~~Wl~~--~~tCPvCR~ 180 (184)
.+++..|.||...-. . ++-+.--.|.-.||..|+..-+.- .=.||.|..
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccC
Confidence 457789999997641 1 122233468889999999742211 125888854
No 108
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=74.95 E-value=2.2 Score=30.00 Aligned_cols=47 Identities=28% Similarity=0.448 Sum_probs=32.0
Q ss_pred CCCCccccccccccCCCCCeEecCCCCcccHhHHHHHH------hC-----CCCCCccCCc
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWN------ER-----SESCPICDQE 181 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl------~~-----~~tCPvCR~~ 181 (184)
...++.|.||-+-- +-+.--.|-..||..||.+-+ +. .=.|++|+-.
T Consensus 54 Dg~~~~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCCS---EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCCC---eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 35667799998753 322334688999999999742 11 1279999754
No 109
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=73.91 E-value=1.7 Score=30.84 Aligned_cols=34 Identities=15% Similarity=0.437 Sum_probs=26.2
Q ss_pred CCCccccccccccC-CC-CCeEecCCCCcccHhHHH
Q 030003 133 EEEDTCPICLEEYD-TE-NPKLITKCEHHFHLSCIL 166 (184)
Q Consensus 133 ~~~~~C~ICle~~~-~~-~~~~~~~C~H~Fh~~CI~ 166 (184)
..+..|.+|...|. .. ....-..|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 56788999999993 32 344667899999999954
No 110
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=73.20 E-value=0.97 Score=34.97 Aligned_cols=47 Identities=21% Similarity=0.535 Sum_probs=26.8
Q ss_pred CccccccccccCCCCCeEecCCCCcccHhHHHHHHhC-----CCCCCccCCc
Q 030003 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER-----SESCPICDQE 181 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~-----~~tCPvCR~~ 181 (184)
+..|.||...-..+.-+.--.|...||..|+..=|.. .=.||.|+..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3468888764333344444578999999999843332 1269999753
No 111
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=70.32 E-value=3.1 Score=25.71 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=26.3
Q ss_pred CCCCccccccccccCCCCCeEecCC-CCcccHhHHHHH
Q 030003 132 SEEEDTCPICLEEYDTENPKLITKC-EHHFHLSCILEW 168 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~~C-~H~Fh~~CI~~W 168 (184)
.++..-|.||.++- .+.-+.| +-.||..|..+.
T Consensus 5 ~ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 46677899999983 3677889 789999998765
No 112
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=69.96 E-value=3.4 Score=28.16 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=23.0
Q ss_pred ccccccccccC-------CCCCeEecCCCCcccHhHHHHH
Q 030003 136 DTCPICLEEYD-------TENPKLITKCEHHFHLSCILEW 168 (184)
Q Consensus 136 ~~C~ICle~~~-------~~~~~~~~~C~H~Fh~~CI~~W 168 (184)
+.|.||+..-. .++-+.-..|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 56999987541 1233444579999999998754
No 113
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=69.80 E-value=3.2 Score=27.02 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=26.0
Q ss_pred CCCCccccccccccCCCCCe-EecCCCCcccHhHHHH
Q 030003 132 SEEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILE 167 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~ 167 (184)
..+...|.+|...|..-... ---.||++||..|...
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 35667899999999643332 3357999999999654
No 114
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=69.53 E-value=2.2 Score=28.99 Aligned_cols=32 Identities=25% Similarity=0.592 Sum_probs=22.4
Q ss_pred cCCCCccccccccccCCCCCeEec---CCCCcccHhHHH
Q 030003 131 ASEEEDTCPICLEEYDTENPKLIT---KCEHHFHLSCIL 166 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~---~C~H~Fh~~CI~ 166 (184)
...+++.|.+|.+. ++ ++.- .|-..||..|+.
T Consensus 11 ~~~~~~~C~~C~~~---G~-ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 11 KQMHEDYCFQCGDG---GE-LVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp CCSSCSSCTTTCCC---SE-EEECCSTTCCCEECTGGGT
T ss_pred cCCCCCCCCcCCCC---Cc-EeEECCCCCCcccccccCc
Confidence 34677889999842 23 2333 488999999987
No 115
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=69.52 E-value=0.29 Score=30.45 Aligned_cols=46 Identities=26% Similarity=0.584 Sum_probs=26.9
Q ss_pred CCCccccccccccCCCCCeEec---CCCCcccHhHHHHHH---h-----CCCCCCccCC
Q 030003 133 EEEDTCPICLEEYDTENPKLIT---KCEHHFHLSCILEWN---E-----RSESCPICDQ 180 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~---~C~H~Fh~~CI~~Wl---~-----~~~tCPvCR~ 180 (184)
++...| ||-.....+. .+.- .|...||..|+.--- + .+..||.||.
T Consensus 8 e~~v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 8 EAKVRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SCEECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCEEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 344556 8966554332 2333 488899999973110 0 1347999974
No 116
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=69.21 E-value=4.2 Score=25.46 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=30.0
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHH------H---hCCCCCCccCC
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEW------N---ERSESCPICDQ 180 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~W------l---~~~~tCPvCR~ 180 (184)
+...| ||...+..+.-+.--.|...||..|+.-- | .....||.|+.
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 34556 89888753333334468899999998521 1 24568999964
No 117
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.05 E-value=2.9 Score=25.40 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=12.0
Q ss_pred cccccccccCCCCCeEecCCCCcccHhH
Q 030003 137 TCPICLEEYDTENPKLITKCEHHFHLSC 164 (184)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~C 164 (184)
.|..|-..+...+. ++..-+..||..|
T Consensus 7 ~C~~C~~~I~~~~~-~~~a~~~~~H~~C 33 (72)
T 1wyh_A 7 GCSACGETVMPGSR-KLEYGGQTWHEHC 33 (72)
T ss_dssp BCSSSCCBCCSSSC-EECSTTCCEETTT
T ss_pred CCccCCCccccCcc-EEEECccccCccc
Confidence 45555555532222 3333345555544
No 118
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=69.04 E-value=0.7 Score=29.58 Aligned_cols=27 Identities=26% Similarity=0.637 Sum_probs=18.9
Q ss_pred cCCCCcccHhHHHHHHhC----C-CCCCccCC
Q 030003 154 TKCEHHFHLSCILEWNER----S-ESCPICDQ 180 (184)
Q Consensus 154 ~~C~H~Fh~~CI~~Wl~~----~-~tCPvCR~ 180 (184)
-.|...||..|+..-|.. . =.||.|+.
T Consensus 45 D~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 45 DECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 368899999999854432 1 26999975
No 119
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=68.24 E-value=3.1 Score=30.10 Aligned_cols=33 Identities=24% Similarity=0.534 Sum_probs=26.2
Q ss_pred CCCccccccccccC--CCCCeEecCCCCcccHhHH
Q 030003 133 EEEDTCPICLEEYD--TENPKLITKCEHHFHLSCI 165 (184)
Q Consensus 133 ~~~~~C~ICle~~~--~~~~~~~~~C~H~Fh~~CI 165 (184)
..+..|.+|+..|. .+...+-..|.|.+|..|-
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 36788999999873 3445577789999999996
No 120
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=67.95 E-value=3.3 Score=27.04 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=26.7
Q ss_pred CCCccccccccccCCCCCe-EecCCCCcccHhHHHHHH
Q 030003 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWN 169 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~Wl 169 (184)
.+...|.+|...|..-... ---.||++||..|...++
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 3456799999999643332 445799999999976543
No 121
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=67.39 E-value=4 Score=26.18 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=26.5
Q ss_pred CCCccccccccccCCCCCe-EecCCCCcccHhHHHHH
Q 030003 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~W 168 (184)
.+...|.+|...|..-... ---.||++||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4567899999999643332 33579999999997654
No 122
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=66.59 E-value=0.76 Score=27.81 Aligned_cols=43 Identities=26% Similarity=0.542 Sum_probs=25.6
Q ss_pred CCccccccccccCCCCCeEecC--CC-CcccHhHHHHHHhC----CCCCCccCC
Q 030003 134 EEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQ 180 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~--C~-H~Fh~~CI~~Wl~~----~~tCPvCR~ 180 (184)
+...| ||..... +.-+.--. |. ..||..|+. |.. .-.||.|++
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44556 9987642 22212223 55 689999997 433 236888854
No 123
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=65.85 E-value=0.84 Score=27.54 Aligned_cols=44 Identities=25% Similarity=0.508 Sum_probs=26.2
Q ss_pred CCCccccccccccCCCCCeEecC--CC-CcccHhHHHHHHhC----CCCCCccCC
Q 030003 133 EEEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQ 180 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~--C~-H~Fh~~CI~~Wl~~----~~tCPvCR~ 180 (184)
.+...| ||..... +.-+.--. |. ..||..|+. |.. +-.||.|++
T Consensus 7 ~e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 344556 9988652 22222224 65 699999997 332 237998865
No 124
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.69 E-value=4 Score=25.68 Aligned_cols=39 Identities=26% Similarity=0.596 Sum_probs=23.4
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
....|.-|-..+..++.+. .=+..||..|+ .|-.|++.|
T Consensus 14 ~~~~C~~C~~~I~~~~~v~--a~~~~wH~~CF--------~C~~C~~~L 52 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLL--ALDKQWHVSCF--------KCQTCSVIL 52 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEE--ETTEEECTTTC--------BCSSSCCBC
T ss_pred CCCCCcCcCCeeCCCeEEE--ECCcccccccC--------CcCcCCCCc
Confidence 4456888887775444332 23667777664 566666554
No 125
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=65.21 E-value=1.4 Score=23.56 Aligned_cols=14 Identities=29% Similarity=0.736 Sum_probs=10.8
Q ss_pred CCCccccccccccC
Q 030003 133 EEEDTCPICLEEYD 146 (184)
Q Consensus 133 ~~~~~C~ICle~~~ 146 (184)
.+...||||+..+.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 35578999998875
No 126
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=64.74 E-value=4.1 Score=26.01 Aligned_cols=36 Identities=25% Similarity=0.524 Sum_probs=25.9
Q ss_pred CCCccccccccccCCCCCe-EecCCCCcccHhHHHHH
Q 030003 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~W 168 (184)
.+...|.+|...|..-... ---.||++||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 4556899999999643322 33579999999997643
No 127
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.40 E-value=3.2 Score=25.63 Aligned_cols=27 Identities=19% Similarity=0.495 Sum_probs=13.5
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhH
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSC 164 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~C 164 (184)
..|..|-+.+..++. +..-+..||..|
T Consensus 10 ~~C~~C~~~I~~~~~--v~a~~~~~H~~C 36 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEK--VSSLGKDWHKFC 36 (76)
T ss_dssp CBCTTTCCBCCTTTE--EEETTEEEETTT
T ss_pred CCCcCCCCEeECCeE--EEECCeEeeCCC
Confidence 456666666543332 223355566555
No 128
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.31 E-value=4.2 Score=25.41 Aligned_cols=38 Identities=18% Similarity=0.464 Sum_probs=20.4
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
..|..|-..+..++. ++..=+..||..|. .|-.|++.|
T Consensus 16 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L 53 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQ-NVEYKGTVWHKDCF--------TCSNCKQVI 53 (82)
T ss_dssp CBCSSSCCBCCSSSC-EEECSSCEEETTTC--------CCSSSCCCC
T ss_pred CcCccCCcccccCce-EEEECccccccccC--------chhhCCCcc
Confidence 456677666644333 23333566666654 455565544
No 129
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=63.74 E-value=4.3 Score=28.20 Aligned_cols=36 Identities=17% Similarity=0.406 Sum_probs=26.0
Q ss_pred CCCccccccccccCCCCCe-EecCCCCcccHhHHHHH
Q 030003 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~W 168 (184)
.+...|.+|...|..-... ---.||++||..|....
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 4456899999999643322 33579999999997544
No 130
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=63.74 E-value=2.9 Score=28.02 Aligned_cols=12 Identities=25% Similarity=0.814 Sum_probs=10.6
Q ss_pred cccHhHHHHHHh
Q 030003 159 HFHLSCILEWNE 170 (184)
Q Consensus 159 ~Fh~~CI~~Wl~ 170 (184)
-||+.|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 131
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.56 E-value=3.2 Score=25.20 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=4.8
Q ss_pred cccccccccC
Q 030003 137 TCPICLEEYD 146 (184)
Q Consensus 137 ~C~ICle~~~ 146 (184)
.|..|-..+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x4k_A 7 GCQECKKTIM 16 (72)
T ss_dssp CBSSSCCCCC
T ss_pred CCccCCCccc
Confidence 4555554443
No 132
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=63.47 E-value=2.9 Score=27.93 Aligned_cols=12 Identities=25% Similarity=0.786 Sum_probs=10.7
Q ss_pred cccHhHHHHHHh
Q 030003 159 HFHLSCILEWNE 170 (184)
Q Consensus 159 ~Fh~~CI~~Wl~ 170 (184)
-||..|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 133
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=63.46 E-value=4.8 Score=25.06 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=23.9
Q ss_pred CccccccccccCCCCCe-EecCCCCcccHhHHHH
Q 030003 135 EDTCPICLEEYDTENPK-LITKCEHHFHLSCILE 167 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~ 167 (184)
+..|.+|...|..-... ---.||++||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 35799999999643222 3357999999999653
No 134
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.44 E-value=4.8 Score=25.80 Aligned_cols=35 Identities=14% Similarity=0.375 Sum_probs=25.3
Q ss_pred CCCccccccccccCCCCCe-EecCCCCcccHhHHHH
Q 030003 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILE 167 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~ 167 (184)
.+...|.+|...|..-... ---.||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4556899999999543322 3357999999999654
No 135
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.21 E-value=4.2 Score=24.66 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=21.8
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhC
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNER 171 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~ 171 (184)
+=..|..|...+. +.. ....=+..||..|..+.+..
T Consensus 32 ~CF~C~~C~~~L~-~~~-~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 32 GCFVCSTCRAQLR-GQH-FYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTCBCSSSCCBCT-TSC-EEESSSCEEEHHHHHHHHHT
T ss_pred cCCcccccCCcCC-cCc-CEeeCCeEECHHHHHHHHcc
Confidence 3456777777763 222 34445677777777776654
No 136
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=63.10 E-value=1.8 Score=26.79 Aligned_cols=46 Identities=7% Similarity=-0.049 Sum_probs=30.2
Q ss_pred CCccccccccccCCCCCeEecCCCCcccH-hHHHHHHhCCCCCCccCCccc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHL-SCILEWNERSESCPICDQESL 183 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~-~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
+=..|..|...+..+ . ....=+..||. .|..+-+ ...|-.|...+.
T Consensus 26 ~CF~C~~C~~~L~~~-~-~~~~~g~~yC~~~cy~~~f--~~~C~~C~~~~~ 72 (76)
T 1iml_A 26 PCLKCEKCGKTLTSG-G-HAEHEGKPYCNHPCYSAMF--GPKGFGRGGAES 72 (76)
T ss_dssp TTCBCTTTCCBCCTT-T-EEEETTEEEETTTHHHHHS--SCCCSSCCCSSS
T ss_pred CCCCccccCccCCCC-c-eECcCCeEeeCHHHHHHHh--CccCCCcCCcee
Confidence 457888998888633 2 33445678888 5876643 446888876543
No 137
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.03 E-value=4.8 Score=24.45 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=12.8
Q ss_pred ccccccccccCC--CCCeEecCCCCcccHhH
Q 030003 136 DTCPICLEEYDT--ENPKLITKCEHHFHLSC 164 (184)
Q Consensus 136 ~~C~ICle~~~~--~~~~~~~~C~H~Fh~~C 164 (184)
..|..|-..+.. +.. ++..-+..||..|
T Consensus 6 ~~C~~C~~~I~~~~~~~-~~~a~~~~wH~~C 35 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTK-YISFEERQWHNDC 35 (72)
T ss_dssp CSBTTTTBCCCCSSSCS-CEECSSCEECTTT
T ss_pred CCCcCCCccccCCCCcc-eEEECCcccCccc
Confidence 345556555542 112 2233455555555
No 138
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=62.69 E-value=0.3 Score=29.61 Aligned_cols=48 Identities=23% Similarity=0.524 Sum_probs=32.7
Q ss_pred CCCcccccccc-ccCCCCCeEecCCCCcccHhHHHHHHhCCC----CCCccCC
Q 030003 133 EEEDTCPICLE-EYDTENPKLITKCEHHFHLSCILEWNERSE----SCPICDQ 180 (184)
Q Consensus 133 ~~~~~C~ICle-~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~----tCPvCR~ 180 (184)
.+...|.||+. .|.++..-.-.-|.-.||..|-.+|-.+++ .|-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 56778999985 455555556667888899888777643333 4666654
No 139
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.67 E-value=4.8 Score=25.06 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=24.8
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
....|..|-+.+.. . .+.--+..||..|. .|-.|++.|
T Consensus 14 ~~~~C~~C~~~I~~--~-~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 14 KLPMCDKCGTGIVG--V-FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCCSSSCCCCCS--S-CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCCccccCCCCccC--c-EEEECcceeCcCcC--------eeCCCCCCC
Confidence 44578888887752 2 34445678887775 577776654
No 140
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.35 E-value=2.2 Score=27.79 Aligned_cols=48 Identities=19% Similarity=0.357 Sum_probs=31.0
Q ss_pred CCCccccccccccCC-CCC-eEecCCCCcccHhHHHHHHhC--------CCCCCccCC
Q 030003 133 EEEDTCPICLEEYDT-ENP-KLITKCEHHFHLSCILEWNER--------SESCPICDQ 180 (184)
Q Consensus 133 ~~~~~C~ICle~~~~-~~~-~~~~~C~H~Fh~~CI~~Wl~~--------~~tCPvCR~ 180 (184)
+++..|.||...-.. ++. +.--.|...||..|+..-|.. .=.|+.|+.
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 356789999986432 233 233468999999999754431 226888754
No 141
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=59.95 E-value=4.5 Score=24.98 Aligned_cols=47 Identities=21% Similarity=0.475 Sum_probs=30.3
Q ss_pred CCCccccccccccCCCCCeEecCCCCcccHhHHHHHHh---CCCCCCccCC
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE---RSESCPICDQ 180 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~---~~~tCPvCR~ 180 (184)
.+...| ||...+..+.-+.--.|...||..|+.---. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 456678 9988775222333346889999999863221 2347888865
No 142
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=59.62 E-value=7.3 Score=24.52 Aligned_cols=47 Identities=23% Similarity=0.533 Sum_probs=29.4
Q ss_pred CCCccccccccccCCCCCeEec--CCCCcccHhHHHHHHh---------CCCCCCccCC
Q 030003 133 EEEDTCPICLEEYDTENPKLIT--KCEHHFHLSCILEWNE---------RSESCPICDQ 180 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~--~C~H~Fh~~CI~~Wl~---------~~~tCPvCR~ 180 (184)
.+...| ||-.....+.-+.-- .|...||..|+.---. ....||.|+.
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 345667 898874323222333 6999999999853211 2457999964
No 143
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=59.55 E-value=21 Score=23.37 Aligned_cols=49 Identities=18% Similarity=0.440 Sum_probs=34.2
Q ss_pred CCccccccccccCC---CCC-eEecCCCCcccHhHHHH-HHhCCCCCCccCCcc
Q 030003 134 EEDTCPICLEEYDT---ENP-KLITKCEHHFHLSCILE-WNERSESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~---~~~-~~~~~C~H~Fh~~CI~~-Wl~~~~tCPvCR~~l 182 (184)
....|.||=+.+.. ++. +..-.|+--.|+.|+.- +-+.+..||.|+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 45689999999732 222 23346888999999863 334578999998653
No 144
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=59.00 E-value=0.87 Score=31.72 Aligned_cols=46 Identities=20% Similarity=0.545 Sum_probs=27.1
Q ss_pred CCCccccccccccCCCCCe-EecCCCCcccHhHHHHHHhCCCCCCcc
Q 030003 133 EEEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEWNERSESCPIC 178 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~Wl~~~~tCPvC 178 (184)
.+...|.+|...|..-... ---.||.+||..|....+.....|-.|
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 3456899999999532222 345799999999976654433344444
No 145
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.36 E-value=4.9 Score=24.67 Aligned_cols=40 Identities=20% Similarity=0.541 Sum_probs=21.5
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
....|.-|-..+...+. ++..-+..||..|. .|-.|++.|
T Consensus 10 ~~~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L 49 (77)
T 1g47_A 10 ASATCERCKGGFAPAEK-IVNSNGELYHEQCF--------VCAQCFQQF 49 (77)
T ss_dssp CCCBCSSSCCBCCSTTT-CEEETTEEECTTTC--------CCTTTCCCC
T ss_pred CCCCchhcCCccCCCce-EEEeCccEeccccC--------eECCCCCCC
Confidence 34567777777653333 22233556666663 455565544
No 146
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.05 E-value=5.5 Score=25.44 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=12.4
Q ss_pred CccccccccccCCCCCeEecCCCCcccHhH
Q 030003 135 EDTCPICLEEYDTENPKLITKCEHHFHLSC 164 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~C 164 (184)
...|..|-..+. .. .+..-+..||..|
T Consensus 25 ~~~C~~C~~~I~--~~-~v~a~~~~~H~~C 51 (90)
T 2dar_A 25 TPMCAHCNQVIR--GP-FLVALGKSWHPEE 51 (90)
T ss_dssp CCBBSSSCCBCC--SC-EEEETTEEECTTT
T ss_pred CCCCccCCCEec--ce-EEEECCccccccC
Confidence 345666655553 22 2223345555554
No 147
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=57.69 E-value=2.5 Score=28.61 Aligned_cols=29 Identities=28% Similarity=0.550 Sum_probs=19.8
Q ss_pred CeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 150 PKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 150 ~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
+..-..||+.|. .=+.....||.|+...+
T Consensus 67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp CCBBTTTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred CcChhhCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 336778999991 22344568999998654
No 148
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.10 E-value=4.9 Score=24.75 Aligned_cols=38 Identities=18% Similarity=0.496 Sum_probs=20.6
Q ss_pred ccccccccccCC--CCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 136 DTCPICLEEYDT--ENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 136 ~~C~ICle~~~~--~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
..|..|-..+.. ... .+..-+..||..|. .|-.|++.|
T Consensus 6 ~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~CF--------~C~~C~~~L 45 (76)
T 1x68_A 6 SGCVACSKPISGLTGAK-FICFQDSQWHSECF--------NCGKCSVSL 45 (76)
T ss_dssp CCCTTTCCCCCTTTTCC-EEEETTEEEEGGGC--------BCTTTCCBC
T ss_pred CCCccCCCcccCCCCce-eEEECCcccCcccC--------ChhhCCCcC
Confidence 457777776642 112 33344566776664 455555543
No 149
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=55.13 E-value=7.6 Score=24.70 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=14.3
Q ss_pred CccccccccccCCCCCeEecCCCCcccHhHH
Q 030003 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCI 165 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI 165 (184)
...|..|-+.+.. . .+..-+..||..|.
T Consensus 25 ~~~C~~C~~~I~~--~-~~~a~~~~~H~~CF 52 (89)
T 1x64_A 25 MPLCDKCGSGIVG--A-VVKARDKYRHPECF 52 (89)
T ss_dssp CCBCTTTCCBCCS--C-CEESSSCEECTTTC
T ss_pred CCCcccCCCEecc--c-EEEECCceECccCC
Confidence 3456666666542 2 23334556666553
No 150
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=54.63 E-value=0.48 Score=31.68 Aligned_cols=42 Identities=33% Similarity=0.454 Sum_probs=26.9
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
.+..||+|..++.... ++++|..|-.. ++....||-|.++|-
T Consensus 31 M~~~CP~Cq~eL~~~g-------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQDN-------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEEET-------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccccCccCCCcceecC-------CEEECccccch-hhccccCcchhhHHH
Confidence 3478999998874221 34446666432 344567999998874
No 151
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.57 E-value=5.8 Score=30.36 Aligned_cols=35 Identities=17% Similarity=0.466 Sum_probs=25.8
Q ss_pred CCccccccccccCCCCCe-EecCCCCcccHhHHHHH
Q 030003 134 EEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~W 168 (184)
+...|.+|...|..-... ---.||++||..|...+
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 456899999999643332 34579999999997644
No 152
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=54.55 E-value=5.8 Score=30.10 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=25.5
Q ss_pred CCccccccccccCCCCCe-EecCCCCcccHhHHHHH
Q 030003 134 EEDTCPICLEEYDTENPK-LITKCEHHFHLSCILEW 168 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~-~~~~C~H~Fh~~CI~~W 168 (184)
++..|.+|...|..-... ---.||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 357899999999643332 33579999999996543
No 153
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=54.03 E-value=1.8 Score=26.28 Aligned_cols=43 Identities=26% Similarity=0.516 Sum_probs=25.8
Q ss_pred CCccccccccccCCCCCeEecC--CC-CcccHhHHHHHHhC----CCCCCccCC
Q 030003 134 EEDTCPICLEEYDTENPKLITK--CE-HHFHLSCILEWNER----SESCPICDQ 180 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~--C~-H~Fh~~CI~~Wl~~----~~tCPvCR~ 180 (184)
+...| ||..... +.-+.--. |. ..||..|+. |.. +-.||.|++
T Consensus 10 e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 44556 9988642 22112223 54 899999996 322 237998865
No 154
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.62 E-value=7.1 Score=24.54 Aligned_cols=39 Identities=28% Similarity=0.629 Sum_probs=24.2
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
....|..|-..+...+. +..=+..||..|. .|-.|++.|
T Consensus 14 ~~~~C~~C~~~I~~~e~--v~a~~~~wH~~CF--------~C~~C~~~L 52 (82)
T 2co8_A 14 AGDLCALCGEHLYVLER--LCVNGHFFHRSCF--------RCHTCEATL 52 (82)
T ss_dssp SSCBCSSSCCBCCTTTB--CCBTTBCCBTTTC--------BCSSSCCBC
T ss_pred CCCCCcccCCCcccceE--EEECCCeeCCCcC--------EEcCCCCCc
Confidence 45678888888753333 2234677887774 466666544
No 155
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=53.24 E-value=6.1 Score=26.93 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=18.6
Q ss_pred CccccccccccCCCCCeEecCCCCcccHhHHHHHHh
Q 030003 135 EDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNE 170 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~ 170 (184)
=..|.+|...+..++. ....=+..||..|..+.+.
T Consensus 36 CF~C~~C~~~L~~g~~-f~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDR-YLLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TCBCTTTCCBCCTTCE-EEECSSSEEEGGGHHHHHH
T ss_pred cCccccCCCCCCCCCc-EEeeCCEEEcHHHhHHHhc
Confidence 3556666666633332 2333456666666666553
No 156
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=52.06 E-value=6.2 Score=23.66 Aligned_cols=40 Identities=20% Similarity=0.541 Sum_probs=24.0
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
....|..|-..+...+. ++..=+..||..|. .|-.|++.|
T Consensus 10 ~~~~C~~C~~~i~~~e~-~~~~~~~~~H~~CF--------~C~~C~~~L 49 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEK-IVNSNGELYHEQCF--------VCAQCFQQF 49 (72)
T ss_dssp TTCBCTTTCCBCCTTCE-EEEETTEEEETTTS--------SCTTTCCCC
T ss_pred CCccchhcCccccCCce-EEEeCcCeeCcCCC--------cccCCCCCC
Confidence 34568888877754343 33344667777765 466666654
No 157
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.55 E-value=5.6 Score=23.98 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=14.9
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHH
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWN 169 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl 169 (184)
..|..|...+... .....=+..||..|..+.+
T Consensus 32 F~C~~C~~~L~~~--~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 32 FRCDLCQEVLADI--GFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp SBCSSSCCBCSSS--CCEEETTEEECHHHHHHHH
T ss_pred CEeCCCCCcCCCC--ccEeECCeEECHHHhhhhc
Confidence 4555555555322 1222334555555555443
No 158
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=51.40 E-value=3 Score=25.14 Aligned_cols=38 Identities=21% Similarity=0.650 Sum_probs=25.8
Q ss_pred CCccccccccccCCC---CCeEecC--CCCcccHhHHHHHHhC
Q 030003 134 EEDTCPICLEEYDTE---NPKLITK--CEHHFHLSCILEWNER 171 (184)
Q Consensus 134 ~~~~C~ICle~~~~~---~~~~~~~--C~H~Fh~~CI~~Wl~~ 171 (184)
....||-|.-.++-. +.+.-.. |++.||..|...|-..
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 345788888777432 2222233 8999999999999754
No 159
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.78 E-value=9.6 Score=22.81 Aligned_cols=32 Identities=13% Similarity=0.442 Sum_probs=15.3
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHH
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWN 169 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl 169 (184)
..|..|...+... . ....=+..||..|..+.+
T Consensus 32 F~C~~C~~~L~~~-~-~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 32 FVCTACRKQLSGQ-R-FTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp SBCSSSCCBCTTS-C-CEESSSSEECHHHHHHHT
T ss_pred CccCCCCCcCCcC-c-eEeeCCeEECHHHHHHHh
Confidence 4566666555311 1 222334566666655443
No 160
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=50.48 E-value=2.2 Score=27.60 Aligned_cols=32 Identities=22% Similarity=0.648 Sum_probs=20.7
Q ss_pred ccccccccC--CCCCeEec-CCCCcccHhHHHHHH
Q 030003 138 CPICLEEYD--TENPKLIT-KCEHHFHLSCILEWN 169 (184)
Q Consensus 138 C~ICle~~~--~~~~~~~~-~C~H~Fh~~CI~~Wl 169 (184)
||-|-..+. .+...+.- .|++.||..|-..|=
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~ 62 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWE 62 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchh
Confidence 776655442 12222444 499999999988883
No 161
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=50.04 E-value=6.9 Score=26.85 Aligned_cols=39 Identities=18% Similarity=0.475 Sum_probs=26.2
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
....|.-|-..+. ...++..-+..||..|. .|-.|++.|
T Consensus 60 ~~~~C~~C~~~I~--~~~~v~a~~~~wH~~CF--------~C~~C~~~L 98 (123)
T 2l4z_A 60 SWKRCAGCGGKIA--DRFLLYAMDSYWHSRCL--------KCSSCQAQL 98 (123)
T ss_dssp SCSBBSSSSSBCC--SSSEEEETTEEEETTTS--------BCTTTCCBG
T ss_pred cCCcCcCCCCCcC--CcEEEEeCCcEEccccc--------CcCcCCCcc
Confidence 4567999988875 22234455778888774 577777765
No 162
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.38 E-value=11 Score=22.95 Aligned_cols=32 Identities=13% Similarity=0.285 Sum_probs=13.5
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHH
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEW 168 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~W 168 (184)
..|..|...+..+.. ....=+..||..|....
T Consensus 32 F~C~~C~~~L~~~~~-f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 32 ALCVRCGQMFAEGEE-MYLQGSSIWHPACRQAA 63 (73)
T ss_dssp SCCSSSCCCCCSSCC-CEEETTEEECTTHHHHT
T ss_pred CEeCCCCCCCCCCCe-eEeeCCEEEChHHChHh
Confidence 445555555432222 22223345555555443
No 163
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=48.64 E-value=11 Score=25.46 Aligned_cols=48 Identities=10% Similarity=0.008 Sum_probs=34.0
Q ss_pred CccccccccccCC-CCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 135 EDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 135 ~~~C~ICle~~~~-~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
=..|..|...+.. +.. ....=|..||..|..+-+..+..|-.|.+.|.
T Consensus 32 CF~C~~C~~~L~~~~~~-~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHCCSSSCCCTTTSEEC-CEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCCcCCCCCcccccCCe-EEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 3578888887741 122 34455778999999887766668999988764
No 164
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=48.11 E-value=1.6 Score=27.92 Aligned_cols=20 Identities=25% Similarity=0.654 Sum_probs=15.9
Q ss_pred CCCCcccHhHHHHHHhCCCCCC
Q 030003 155 KCEHHFHLSCILEWNERSESCP 176 (184)
Q Consensus 155 ~C~H~Fh~~CI~~Wl~~~~tCP 176 (184)
.|+|.||..|-..|=. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6999999999998844 4553
No 165
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.96 E-value=9.5 Score=23.69 Aligned_cols=38 Identities=24% Similarity=0.591 Sum_probs=20.2
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
..|..|-..+..+.. ++..=+..||..|. .|-.|++.|
T Consensus 16 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L 53 (82)
T 2ehe_A 16 NTCAECQQLIGHDSR-ELFYEDRHFHEGCF--------RCCRCQRSL 53 (82)
T ss_dssp CBCTTTCCBCCSSCC-BCCCSSCCCBTTTS--------BCTTTCCBC
T ss_pred CcCccCCCccccCcE-EEEeCCccccccCC--------eecCCCCcc
Confidence 357777776643222 23334566676664 455555543
No 166
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.92 E-value=12 Score=23.29 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=13.6
Q ss_pred CccccccccccCCCCCeEecCCCCcccHhH
Q 030003 135 EDTCPICLEEYDTENPKLITKCEHHFHLSC 164 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~C 164 (184)
...|.-|-..+. .. .+.--+..||..|
T Consensus 15 ~~~C~~C~~~I~--~~-~v~a~~~~~H~~C 41 (79)
T 2cor_A 15 KYICQKCHAIID--EQ-PLIFKNDPYHPDH 41 (79)
T ss_dssp CCBCTTTCCBCC--SC-CCCCSSSCCCTTT
T ss_pred CCCCccCCCEec--ce-EEEECcceeCCCC
Confidence 345666666654 22 2233455566555
No 167
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=46.18 E-value=17 Score=30.27 Aligned_cols=46 Identities=15% Similarity=0.390 Sum_probs=31.7
Q ss_pred CCCCccccccccccCCCCCeEec--CCCCcccHhHHHHHHhCC----------CCCCccCC
Q 030003 132 SEEEDTCPICLEEYDTENPKLIT--KCEHHFHLSCILEWNERS----------ESCPICDQ 180 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~~~~~~~~--~C~H~Fh~~CI~~Wl~~~----------~tCPvCR~ 180 (184)
...+..|.||-+.- +-+.-- .|...||..||..++.+. =.|=+|.-
T Consensus 90 DG~~~yCr~C~~Gg---~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCSGE---TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCCCS---SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCCCC---eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 34556788887653 443444 799999999999998431 26777753
No 168
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=46.13 E-value=11 Score=19.25 Aligned_cols=28 Identities=14% Similarity=0.414 Sum_probs=19.5
Q ss_pred CccccccccccCCCCCeEecCCCCcccHhH
Q 030003 135 EDTCPICLEEYDTENPKLITKCEHHFHLSC 164 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~~C~H~Fh~~C 164 (184)
...|+.|-......+. ++-=|..||..|
T Consensus 3 ~~~C~~C~k~Vy~~Ek--~~~~g~~~Hk~C 30 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEK--VNCLDKFWHKAC 30 (31)
T ss_dssp CCBCSSSCSBCCGGGC--CCSSSSCCCGGG
T ss_pred CCcCCccCCEEeccee--EEECCeEecccC
Confidence 3579999888754433 334578899888
No 169
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=46.04 E-value=13 Score=26.93 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=25.7
Q ss_pred cCCCCccccccccccCCCCCeEec--CCCCcccHhHHHHHHhC
Q 030003 131 ASEEEDTCPICLEEYDTENPKLIT--KCEHHFHLSCILEWNER 171 (184)
Q Consensus 131 ~~~~~~~C~ICle~~~~~~~~~~~--~C~H~Fh~~CI~~Wl~~ 171 (184)
....+..|.||-+.- +-+.-- .|-..||..||..++..
T Consensus 75 eDG~~~yC~wC~~Gg---~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 75 DDGYQSYCTICCGGR---EVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp TTSSBSSCTTTSCCS---EEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCCcceeeEecCCC---eEEeeCCCCCCCchhHHHHHHhcCH
Confidence 334556788887642 222222 58899999999998865
No 170
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=45.16 E-value=7 Score=24.16 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=30.0
Q ss_pred CCCccccccccccCCCC-CeEecCCCCcccHhHHHHHH----hCCCCCCccCC
Q 030003 133 EEEDTCPICLEEYDTEN-PKLITKCEHHFHLSCILEWN----ERSESCPICDQ 180 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~-~~~~~~C~H~Fh~~CI~~Wl----~~~~tCPvCR~ 180 (184)
.+...| ||...+..+. -+.--.|...||..|+.--- .....||.|+.
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 445668 7988764332 33334688999999985421 12447998864
No 171
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=44.55 E-value=16 Score=24.65 Aligned_cols=39 Identities=18% Similarity=0.469 Sum_probs=28.6
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
....|.-|-..+.... ++.--+..||..|. .|-.|++.|
T Consensus 4 ~~~~C~~C~~~I~~~~--~~~a~~~~wH~~CF--------~C~~C~~~L 42 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRF--LLYAMDSYWHSRCL--------KCSSCQAQL 42 (122)
T ss_dssp CCCCBSSSSSCCCSSC--CEEETTEEECHHHH--------CCSSSCCCT
T ss_pred CCCCCcccCCEeCCcE--EEEECCceeHhhCC--------CcCCCCCcc
Confidence 3567999999886332 23345889999996 688888876
No 172
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=44.35 E-value=9.3 Score=22.62 Aligned_cols=25 Identities=12% Similarity=0.462 Sum_probs=12.0
Q ss_pred cccccccccCCCCCeEecCCCCcccHhH
Q 030003 137 TCPICLEEYDTENPKLITKCEHHFHLSC 164 (184)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~C 164 (184)
.|..|-..+. .. .+..=+..||..|
T Consensus 7 ~C~~C~~~I~--~~-~~~a~~~~~H~~C 31 (66)
T 1nyp_A 7 ICGACRRPIE--GR-VVNAMGKQWHVEH 31 (66)
T ss_dssp EETTTTEECC--SC-EECCTTSBEETTT
T ss_pred CCcccCCEec--ce-EEEECccccccCc
Confidence 4555555554 22 2333455555555
No 173
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.32 E-value=7.9 Score=23.17 Aligned_cols=32 Identities=9% Similarity=0.367 Sum_probs=16.0
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHH
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWN 169 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl 169 (184)
..|..|...+. .......=+..||..|..+.+
T Consensus 32 F~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 32 FVCVTCSKKLA--GQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TBCTTTCCBCT--TSCEEECSSCEEEHHHHHHHH
T ss_pred CEECCCCCCCC--CCccEeECCEEECHHHhHHHh
Confidence 45666665553 111233335566666665544
No 174
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.99 E-value=12 Score=23.87 Aligned_cols=32 Identities=6% Similarity=0.081 Sum_probs=14.8
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHH
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWN 169 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl 169 (184)
..|..|...+.... ....=+..||..|..+-+
T Consensus 43 F~C~~C~~~L~~~~--~~~~~g~~yC~~~y~~~f 74 (91)
T 2d8y_A 43 FRCSYCNNKLSLGT--YASLHGRIYCKPHFNQLF 74 (91)
T ss_dssp CBCTTTCCBCCTTT--CCCSSSCCCCHHHHHHHS
T ss_pred CeeCCCCCCCCCCC--cEeECCEEECHHHHHHHh
Confidence 45555555553221 222234556666654443
No 175
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=43.98 E-value=15 Score=24.90 Aligned_cols=8 Identities=38% Similarity=1.169 Sum_probs=3.9
Q ss_pred CCcccHhH
Q 030003 157 EHHFHLSC 164 (184)
Q Consensus 157 ~H~Fh~~C 164 (184)
++.||..|
T Consensus 87 ~~~~H~~C 94 (131)
T 2xjy_A 87 DKVYHLEC 94 (131)
T ss_dssp TEEEEGGG
T ss_pred CceECccC
Confidence 44455444
No 176
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=42.30 E-value=1.4 Score=28.53 Aligned_cols=39 Identities=23% Similarity=0.523 Sum_probs=20.4
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
..||+|..++..... +.+|..|-.. +.....||-|.++|
T Consensus 3 ~~CP~C~~~l~~~~~-------~~~C~~C~~~-~~~~afCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNGD-------TAHCETCAKD-FSLQALCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECSS-------EEECTTTCCE-EEEEEECSSSCSCC
T ss_pred CCCCCCCCccccCCC-------ceECcccccc-CCCcccCcchhhHH
Confidence 468888777643222 3334445332 22223677777665
No 177
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=41.26 E-value=4.8 Score=25.10 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=12.5
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHH
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILE 167 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~ 167 (184)
..|.+|...+.... ....=+..||..|..+
T Consensus 35 F~C~~C~~~L~~~~--~~~~~~~~yC~~cy~~ 64 (81)
T 1a7i_A 35 FLCMVCRKNLDSTT--VAIHDAEVYCKSCYGK 64 (81)
T ss_dssp EECSSSCCEECSSC--CEEETTEEECSHHHHH
T ss_pred CccCCCCCCCCCCC--eEeeCCEEECHHHHHH
Confidence 44555555443221 1122334555555443
No 178
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=40.82 E-value=9.6 Score=23.29 Aligned_cols=38 Identities=16% Similarity=0.449 Sum_probs=23.6
Q ss_pred ccccccccccCC---CCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 136 DTCPICLEEYDT---ENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 136 ~~C~ICle~~~~---~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
..|.-|-..+.. ... .+..=+..||..|. .|-.|++.|
T Consensus 16 ~~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L 56 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSS-VVAYEGQSWHDYCF--------HCKKCSVNL 56 (77)
T ss_dssp CCCSSSCCCCCCCSSCCC-EEEETTEEEETTTC--------BCSSSCCBC
T ss_pred ccCcccCCcccCCCCCce-eEEECcceeCcccC--------EehhcCCCC
Confidence 468888887753 223 33344677887774 577776655
No 179
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=40.77 E-value=14 Score=23.76 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=29.5
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCccc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQESL 183 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l~ 183 (184)
+=..|..|...+. .......=|..||..|..+. ....|..|.+.|.
T Consensus 32 ~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLA--NETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTT--SSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCC
T ss_pred cCCcccccCCCCC--cCeeECcCCEEEChhHhhhh--cCCccccCCCccc
Confidence 4467888887774 22233445678888886432 3458999988764
No 180
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.74 E-value=9 Score=23.78 Aligned_cols=36 Identities=17% Similarity=0.546 Sum_probs=19.6
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
..|..|-..+. .. .+..-+..||..|. .|-.|++.|
T Consensus 16 ~~C~~C~~~I~--~~-~v~a~~~~wH~~CF--------~C~~C~~~L 51 (81)
T 1v6g_A 16 TRCFSCDQFIE--GE-VVSALGKTYHPDCF--------VCAVCRLPF 51 (81)
T ss_dssp CBCTTTCCBCC--SC-CEEETTEEECTTTS--------SCSSSCCCC
T ss_pred CcCccccCEec--cc-eEEECCceeCccCC--------ccccCCCCC
Confidence 35777777664 12 23334566666664 455555544
No 181
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=39.89 E-value=8.5 Score=19.05 Aligned_cols=9 Identities=44% Similarity=1.261 Sum_probs=5.4
Q ss_pred CCCccCCcc
Q 030003 174 SCPICDQES 182 (184)
Q Consensus 174 tCPvCR~~l 182 (184)
.||+|.+.+
T Consensus 8 qcpvcqq~m 16 (29)
T 3vhs_A 8 QCPVCQQMM 16 (29)
T ss_dssp ECTTTCCEE
T ss_pred eChHHHHhC
Confidence 477776543
No 182
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=39.61 E-value=5.9 Score=20.13 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=5.7
Q ss_pred CCCCccCCc
Q 030003 173 ESCPICDQE 181 (184)
Q Consensus 173 ~tCPvCR~~ 181 (184)
..||+|+..
T Consensus 4 ~~CpvCk~q 12 (28)
T 2jvx_A 4 FCCPKCQYQ 12 (28)
T ss_dssp EECTTSSCE
T ss_pred ccCcccccc
Confidence 357777654
No 183
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.34 E-value=12 Score=22.97 Aligned_cols=31 Identities=16% Similarity=0.372 Sum_probs=12.8
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHH
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEW 168 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~W 168 (184)
..|..|...+.. .. ....=+..||..|..+.
T Consensus 42 F~C~~C~~~L~~-~~-~~~~~~~~yC~~cy~~~ 72 (80)
T 2cuq_A 42 LVCTGCQTPLAG-QQ-FTSRDEDPYCVACFGEL 72 (80)
T ss_dssp CBCSSSCCBCTT-CC-EEECSSSEEEHHHHHHH
T ss_pred CCcccCCCcCCC-Ce-eEeECCEEECHHHHHHH
Confidence 344555444421 11 22233445555554443
No 184
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.77 E-value=9.8 Score=23.59 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=15.0
Q ss_pred CccccccccccCCCCCeEec-CCCCcccHhHHHHH
Q 030003 135 EDTCPICLEEYDTENPKLIT-KCEHHFHLSCILEW 168 (184)
Q Consensus 135 ~~~C~ICle~~~~~~~~~~~-~C~H~Fh~~CI~~W 168 (184)
=..|.+|...+. +.. ... .=+..||..|..+.
T Consensus 41 CF~C~~C~~~L~-~~~-f~~~~~g~~yC~~cy~~~ 73 (81)
T 2dlo_A 41 CFTCVVCHRGLD-GIP-FTVDATSQIHCIEDFHRK 73 (81)
T ss_dssp TCBCSSSCCBCT-TSC-EECCTTCCCEEHHHHHHH
T ss_pred hcCcccCCCccC-CCe-eEECCCCEEECHHHHHHH
Confidence 345666665553 111 222 13455666665444
No 185
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.28 E-value=20 Score=23.82 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=24.3
Q ss_pred CCccccccccccCC-CCCeEecCCCCcccHhHHHHHHhCC
Q 030003 134 EEDTCPICLEEYDT-ENPKLITKCEHHFHLSCILEWNERS 172 (184)
Q Consensus 134 ~~~~C~ICle~~~~-~~~~~~~~C~H~Fh~~CI~~Wl~~~ 172 (184)
+=..|..|...+.. +.. ....=|..||..|..+-+..+
T Consensus 29 ~CF~C~~C~~~L~~~g~~-~~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRR-LYYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp TTCCCSSSCSCCCCSSSC-CCCBTTBCCCHHHHHHHHTSC
T ss_pred hcCcccccCCchhcCCCe-eEEECCeeechHHHHHHhCcc
Confidence 44678888877752 122 334446788888887766553
No 186
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=36.10 E-value=7.6 Score=32.20 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCCccccccccccCCCCC-eEecCCCCcccHhHHHHHHhC-------CCCCCccCCc
Q 030003 133 EEEDTCPICLEEYDTENP-KLITKCEHHFHLSCILEWNER-------SESCPICDQE 181 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~-~~~~~C~H~Fh~~CI~~Wl~~-------~~tCPvCR~~ 181 (184)
.+...|.+|...|..... --.-.||++||..|...++.. ...|-.|-..
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 445789999999953222 134579999999999776521 2357666443
No 187
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.26 E-value=33 Score=21.68 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=25.6
Q ss_pred CCCCccccccccccCC--CCCeEecCCCCcccHhHH
Q 030003 132 SEEEDTCPICLEEYDT--ENPKLITKCEHHFHLSCI 165 (184)
Q Consensus 132 ~~~~~~C~ICle~~~~--~~~~~~~~C~H~Fh~~CI 165 (184)
...+..|..|.+.|.. ....+-..|.|..|..|=
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 3567789999999932 234466789999999883
No 188
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=33.94 E-value=31 Score=23.14 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=19.2
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
..|..|...+. .......=|..||..|..+-+ ...|..|.+.|
T Consensus 31 F~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~I 73 (126)
T 2xqn_T 31 FCCFDCDSILA--GEIYVMVNDKPVCKPCYVKNH--AVVCQGCHNAI 73 (126)
T ss_dssp SBCTTTCCBCT--TSEEEEETTEEEEHHHHHHHS--CCBCTTTCSBC
T ss_pred CCcCCCCCCCC--cCEEEeECCEEechHHhCcCc--CccCcccCCcC
Confidence 44555555543 111223334555555544322 23455555544
No 189
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=33.74 E-value=12 Score=22.19 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=12.5
Q ss_pred cccccccccCCCCCeEecCCCCccc--HhH
Q 030003 137 TCPICLEEYDTENPKLITKCEHHFH--LSC 164 (184)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh--~~C 164 (184)
.|.-|-..+..++. .+..-+..|| ..|
T Consensus 4 ~C~~C~~~I~~~~~-~v~a~~~~wH~~~~C 32 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQ-RVTYNNFSWHASTEC 32 (65)
T ss_dssp ECTTTSSEECTTSC-EEEETTEEEETTTTT
T ss_pred CCcCCCCeeccCce-EEEECCCccCCCCCC
Confidence 45556555543222 2223355555 555
No 190
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=32.14 E-value=2.2 Score=20.57 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=8.5
Q ss_pred cccHhHHHHHHh
Q 030003 159 HFHLSCILEWNE 170 (184)
Q Consensus 159 ~Fh~~CI~~Wl~ 170 (184)
.||..|-+.|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 577788777763
No 191
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=31.95 E-value=15 Score=26.88 Aligned_cols=37 Identities=19% Similarity=0.623 Sum_probs=17.3
Q ss_pred cccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 137 TCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 137 ~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
.|..|-..+...+. ++..-++.||..|. .|-.|++.|
T Consensus 71 ~C~~C~~~I~~~e~-~i~a~~~~~H~~CF--------~C~~C~~~L 107 (188)
T 1rut_X 71 ACSACGQSIPASEL-VMRAQGNVYHLKCF--------TCSTCRNRL 107 (188)
T ss_dssp ECTTTCCEECTTSE-EEEETTEEECGGGC--------BCTTTCCBC
T ss_pred ccccCCCccccCcE-EEEcCCCEEeCCCC--------eECCCCCCC
Confidence 35555555532222 22334555665552 455555543
No 192
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.50 E-value=13 Score=22.82 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=13.3
Q ss_pred ccccccccccCCCCCeEecCCCCcccHhHHHH
Q 030003 136 DTCPICLEEYDTENPKLITKCEHHFHLSCILE 167 (184)
Q Consensus 136 ~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~ 167 (184)
..|..|...+..+. ....=+..||..|..+
T Consensus 42 F~C~~C~~~L~~~~--~~~~~~~~yC~~~y~~ 71 (80)
T 1x3h_A 42 FVCGDCFTSFSTGS--FFELDGRPFCELHYHH 71 (80)
T ss_dssp CBCSSSCCBSCSSC--CEESSSCEECHHHHHH
T ss_pred CChhhCCCCCCCCc--EEeECCEEECHHHHHH
Confidence 45555555553221 2222345555555444
No 193
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=31.46 E-value=19 Score=22.07 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=10.6
Q ss_pred hCCCCCCccCCcccC
Q 030003 170 ERSESCPICDQESLI 184 (184)
Q Consensus 170 ~~~~tCPvCR~~l~~ 184 (184)
+....||.|++..++
T Consensus 47 ElkKycp~c~kHtlh 61 (66)
T 3bbo_3 47 ELRKFCPYCYKHTIH 61 (66)
T ss_dssp CCCCCCCSSSSCCCC
T ss_pred EEEccCCCCCCeeeE
Confidence 445678999887654
No 194
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=31.24 E-value=10 Score=21.52 Aligned_cols=8 Identities=38% Similarity=1.356 Sum_probs=6.0
Q ss_pred CCCccCCc
Q 030003 174 SCPICDQE 181 (184)
Q Consensus 174 tCPvCR~~ 181 (184)
.||+|...
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 79998753
No 195
>1q2j_A MU-conotoxin SMIIIA; HET: PCA; NMR {Synthetic} SCOP: j.30.1.1 PDB: 2yen_A*
Probab=28.79 E-value=23 Score=17.32 Aligned_cols=6 Identities=67% Similarity=0.778 Sum_probs=3.6
Q ss_pred cCCCCC
Q 030003 6 CSSRKP 11 (184)
Q Consensus 6 ~~~~~~ 11 (184)
||++|-
T Consensus 10 Cs~rWC 15 (26)
T 1q2j_A 10 CSSRWC 15 (26)
T ss_dssp CCSSSS
T ss_pred ccchhh
Confidence 666664
No 196
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=28.16 E-value=29 Score=25.09 Aligned_cols=44 Identities=11% Similarity=0.240 Sum_probs=28.2
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
+=..|..|...+.... . ..=|..||..|..+-+ ...|..|++.|
T Consensus 86 ~CF~C~~C~~~L~~~~--f-~~~g~~yC~~~y~~~f--~~kC~~C~~~I 129 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERC--F-SRGESVYCKDDFFKRF--GTKCAACQLGI 129 (182)
T ss_dssp STTSCTTTCCCCSSCC--E-EETTEEECHHHHHHTT--SCCCTTTCCCC
T ss_pred ccCccCCCCCccCCCc--e-eECCEeeecCcccccc--ccccccCCCcc
Confidence 4467778877775321 2 2346778888875533 45798898866
No 197
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=27.97 E-value=18 Score=23.58 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=25.7
Q ss_pred CCCccccccccccCCCCCeEecCCC---CcccHhHHHHHHhC----CCCCCc-cCC
Q 030003 133 EEEDTCPICLEEYDTENPKLITKCE---HHFHLSCILEWNER----SESCPI-CDQ 180 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~~~~~C~---H~Fh~~CI~~Wl~~----~~tCPv-CR~ 180 (184)
.+...| ||..... ++-+.--.|. ..||..|+. |.. .-.||. |++
T Consensus 24 ~~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 455567 9987543 2222222444 689999985 222 236998 753
No 198
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=27.85 E-value=22 Score=26.01 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=29.4
Q ss_pred CCccccccccccCCCCCeEecCCCCcccHhHHHHHHhCCCCCCccCCc
Q 030003 134 EEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQE 181 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~ 181 (184)
+=..|..|...+..+. ....=+..||..|..+.+. ..|-.|.+.
T Consensus 141 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~cy~~~f~--~kc~~C~~~ 184 (192)
T 1b8t_A 141 SCFRCAKCGKSLESTT--LADKDGEIYCKGCYAKNFG--PKGFGFGQG 184 (192)
T ss_dssp TTCBCTTTCCBCCSSS--EEEETTEEEEHHHHHHHTC--CCCCCCCCC
T ss_pred hcCCccccCCCCCCCc--ccccCCEEeCHHHHHHhcC--CcCCCCCCc
Confidence 4467888887775322 3455578888888877653 467777654
No 199
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=26.91 E-value=22 Score=20.32 Aligned_cols=41 Identities=20% Similarity=0.464 Sum_probs=25.0
Q ss_pred ccccccCCCCCeEecCCCCcccHhHHHHHH---hCCCCCCccCC
Q 030003 140 ICLEEYDTENPKLITKCEHHFHLSCILEWN---ERSESCPICDQ 180 (184)
Q Consensus 140 ICle~~~~~~~~~~~~C~H~Fh~~CI~~Wl---~~~~tCPvCR~ 180 (184)
||......+.-+.--.|...||..|+.--- ...-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 677665422223334688999999986322 12447888864
No 200
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=26.07 E-value=36 Score=20.30 Aligned_cols=17 Identities=35% Similarity=0.728 Sum_probs=13.1
Q ss_pred CCcccHh--HHHHHHhCCC
Q 030003 157 EHHFHLS--CILEWNERSE 173 (184)
Q Consensus 157 ~H~Fh~~--CI~~Wl~~~~ 173 (184)
||+-|.. ||-.||....
T Consensus 18 G~HcH~EA~tIA~~L~~~~ 36 (61)
T 3ph0_C 18 GHHCHQEAASIADWLAQEE 36 (61)
T ss_dssp TTTCHHHHHHHHHHHHTSS
T ss_pred cchHHHHHHHHHHHHHhCC
Confidence 6777765 9999998653
No 201
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=25.56 E-value=13 Score=21.92 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=10.5
Q ss_pred hCCCCCCccCCcccC
Q 030003 170 ERSESCPICDQESLI 184 (184)
Q Consensus 170 ~~~~tCPvCR~~l~~ 184 (184)
+....||.||+..++
T Consensus 36 elkKycp~~~kHtlh 50 (55)
T 2zjr_1 36 ELKKYDPVAKKHVVF 50 (55)
T ss_pred EEEccCCCCCCEEeE
Confidence 335579999987653
No 202
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=24.11 E-value=40 Score=19.77 Aligned_cols=28 Identities=21% Similarity=0.555 Sum_probs=16.1
Q ss_pred CCCccccccccccCCCCCe-Eec--CCCCcc
Q 030003 133 EEEDTCPICLEEYDTENPK-LIT--KCEHHF 160 (184)
Q Consensus 133 ~~~~~C~ICle~~~~~~~~-~~~--~C~H~F 160 (184)
.+-..||+|...+...+.. +-. .|++.|
T Consensus 8 L~iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 8 LEILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp TTSCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred HhheeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 4556899998876332222 333 466655
No 203
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=22.65 E-value=15 Score=21.34 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=11.1
Q ss_pred HhCCCCCCccCCcccC
Q 030003 169 NERSESCPICDQESLI 184 (184)
Q Consensus 169 l~~~~tCPvCR~~l~~ 184 (184)
|+....||.|++..++
T Consensus 33 LelkKycp~~~khtlh 48 (52)
T 2ftc_P 33 LTLLHYDPVVKQRVLF 48 (52)
T ss_pred eEEEccCCCCCceEeE
Confidence 3445679999987653
No 204
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.33 E-value=23 Score=23.45 Aligned_cols=8 Identities=38% Similarity=1.277 Sum_probs=5.1
Q ss_pred Cccccccc
Q 030003 135 EDTCPICL 142 (184)
Q Consensus 135 ~~~C~ICl 142 (184)
...||+|-
T Consensus 47 g~~CPvCg 54 (112)
T 1l8d_A 47 KGKCPVCG 54 (112)
T ss_dssp SEECTTTC
T ss_pred CCCCCCCC
Confidence 45677774
No 205
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=21.99 E-value=27 Score=24.94 Aligned_cols=25 Identities=20% Similarity=0.518 Sum_probs=16.3
Q ss_pred EecCCCCcccHhHHHHHHhCCCCCCccCCcc
Q 030003 152 LITKCEHHFHLSCILEWNERSESCPICDQES 182 (184)
Q Consensus 152 ~~~~C~H~Fh~~CI~~Wl~~~~tCPvCR~~l 182 (184)
.-..|||.|-.. .....||.|..++
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcc
Confidence 456788888633 2234799998764
No 206
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=21.94 E-value=37 Score=22.90 Aligned_cols=24 Identities=21% Similarity=0.492 Sum_probs=15.7
Q ss_pred EecCCCCcccHhHHHHHHhCCC-CCCccCCc
Q 030003 152 LITKCEHHFHLSCILEWNERSE-SCPICDQE 181 (184)
Q Consensus 152 ~~~~C~H~Fh~~CI~~Wl~~~~-tCPvCR~~ 181 (184)
.-..|||.|-.. .... .||.|...
T Consensus 75 ~C~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 75 ECKDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp ECSSSSCEECSC------CSTTCCCSSSSSC
T ss_pred EcCCCCCEEeCC------CCCCCcCccccCC
Confidence 445677777652 3456 79999765
No 207
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=21.56 E-value=59 Score=19.93 Aligned_cols=44 Identities=27% Similarity=0.490 Sum_probs=27.1
Q ss_pred cccccccccCCC-CCeEecCCCCcccHhHHHHHHh-----CCCCCCccCC
Q 030003 137 TCPICLEEYDTE-NPKLITKCEHHFHLSCILEWNE-----RSESCPICDQ 180 (184)
Q Consensus 137 ~C~ICle~~~~~-~~~~~~~C~H~Fh~~CI~~Wl~-----~~~tCPvCR~ 180 (184)
.-.||...+..+ .-+.--.|.-.||..|+.---. ....||.|+.
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 344898876422 2223346889999999953211 2347998864
No 208
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=20.49 E-value=39 Score=21.64 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=21.3
Q ss_pred CCccccccccccCCCCCe--EecCCCCcccHhHHHH
Q 030003 134 EEDTCPICLEEYDTENPK--LITKCEHHFHLSCILE 167 (184)
Q Consensus 134 ~~~~C~ICle~~~~~~~~--~~~~C~H~Fh~~CI~~ 167 (184)
-...|.||...- .+..+ ....|.-.||..|-.+
T Consensus 16 ~~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 16 WKLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHH
T ss_pred hcCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHH
Confidence 356899996541 01222 2345889999999765
No 209
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6
Probab=20.29 E-value=22 Score=22.83 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=11.3
Q ss_pred HhCCCCCCccCCcccC
Q 030003 169 NERSESCPICDQESLI 184 (184)
Q Consensus 169 l~~~~tCPvCR~~l~~ 184 (184)
|+..+.||.||+..++
T Consensus 62 LELkKYcP~crKHtlH 77 (82)
T 1nkw_1 62 LELKKYDPVAKKHVVF 77 (82)
T ss_pred eEEEccCCCCCCeeeE
Confidence 3446689999987653
Done!