BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030007
         (184 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KMW|A Chain A, Solution Structure Of At3g03773.1 Protein From Arabidopsis
           Thaliana
          Length = 150

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 71/102 (69%), Gaps = 2/102 (1%)

Query: 2   SRHPTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKV 61
           SR+P V WAQR+D+VY+T+ LPDA+D+ +K EP+G F FSA  G     +E  ++LY K+
Sbjct: 2   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSAL-GAQGERFEFSLELYGKI 60

Query: 62  DVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKPPVFLKV 103
            + E + +VGLRNI + ++K E  WW+RLLK   KP  ++KV
Sbjct: 61  -MTEYRKNVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKV 101


>pdb|1EJF|A Chain A, Crystal Structure Of The Human Co-Chaperone P23
 pdb|1EJF|B Chain B, Crystal Structure Of The Human Co-Chaperone P23
          Length = 125

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 5  PTVKWAQRTDRVYITIDLPDAQDVKLKLEPEGKFFFSATSGPDKIPYEVDIDLYDKVDVN 64
           + KW  R D V+I   + D++DV +  E + K  FS   G D   +  +IDL+  +D N
Sbjct: 4  ASAKWYDRRDYVFIEFCVEDSKDVNVNFE-KSKLTFSCLGGSDNFKHLNEIDLFHCIDPN 62

Query: 65 ESKASVGLRNIHYLVKKAEN-KWWSRLLKQAGK 96
          +SK     R+I   ++K E+ + W RL K+  K
Sbjct: 63 DSKHKRTDRSILCCLRKGESGQSWPRLTKERAK 95


>pdb|1SQH|A Chain A, X-Ray Structure Of Drosophila Malonogaster Protein
          Q9vr51 Northeast Structural Genomics Consortium Target
          Fr87
          Length = 312

 Score = 27.7 bits (60), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 11/48 (22%)

Query: 52 EVD--IDLYDKVDVNESKASVGLRNIHYLVKKAENKWWSRLLKQAGKP 97
          EVD  +DLY        K   G+RN HYL+   + K W R L +A  P
Sbjct: 17 EVDELLDLY--------KVKFGIRNFHYLLLYNQRK-WDRQLSEAQIP 55


>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
          Length = 616

 Score = 27.3 bits (59), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 10  AQRTDRVYITIDLPDAQDVKLKLE 33
           A+RTD   I++D PD  D+ L+LE
Sbjct: 315 ARRTDLRRISLDTPDFTDIVLQLE 338


>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
 pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
          Length = 619

 Score = 27.3 bits (59), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 10  AQRTDRVYITIDLPDAQDVKLKLE 33
           A+RTD   I++D PD  D+ L+LE
Sbjct: 323 ARRTDLRRISLDTPDFTDIVLQLE 346


>pdb|3CDZ|B Chain B, Crystal Structure Of Human Factor Viii
          Length = 684

 Score = 26.6 bits (57), Expect = 7.9,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 54  DIDLYDKVDVNESKASVGLRNIHYLVKKAENKW---------WSRLLKQAGKPPVFLKV 103
           D D+YD+ D N+S  S   +  HY +   E  W           R   Q+G  P F KV
Sbjct: 28  DFDIYDE-DENQSPRSFQKKTRHYFIAAVERLWDYGMSSSPHVLRNRAQSGSVPQFKKV 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.133    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,696,709
Number of Sequences: 62578
Number of extensions: 160737
Number of successful extensions: 238
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 9
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)