BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030008
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 262 bits (669), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 115/174 (66%), Positives = 148/174 (85%)
Query: 8 LNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIK 67
L+W ++LF+K+EMEL+L+GLQ +GKT+ VNV+A+G ++EDMIPTVGFNMRK+TKGNVTIK
Sbjct: 20 LDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIK 79
Query: 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVL 127
LWD+GGQPRFRSMWERYCR VSAIVY+VDAAD + + S++ELH+LL+KP L GIP+LVL
Sbjct: 80 LWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL 139
Query: 128 GNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181
GNK D PGAL ++ L ++M L +I DRE+CC+ ISCK NID + WL++HSK
Sbjct: 140 GNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 193
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 253 bits (647), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 112/167 (67%), Positives = 142/167 (85%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76
K+EMEL+L+GLQ +GKT+ VNV+A+G ++EDMIPTVGFNMRK+TKGNVTIKLWD+GGQPR
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPR 79
Query: 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
FRSMWERYCR VSAIVY+VDAAD + + S++ELH+LL+KP L GIP+LVLGNK D PGA
Sbjct: 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139
Query: 137 LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
L ++ L ++M L +I DRE+CC+ ISCK NID + WL++HSKS+
Sbjct: 140 LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 251 bits (641), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 111/167 (66%), Positives = 141/167 (84%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76
K+EMEL+L+GLQ +GKT+ VNV+A+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+GGQPR
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPR 79
Query: 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
FRSMWERYCR V+AIVY++DAAD + + SR+ELH+LL+KP L GIP+LVLGNK D P A
Sbjct: 80 FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNA 139
Query: 137 LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
L ++ L ++M L +I DRE+CC+ ISCK NID + WL++HSKS+
Sbjct: 140 LDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/173 (35%), Positives = 99/173 (57%), Gaps = 1/173 (0%)
Query: 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKL 68
+WL L K+EM + ++GL AGKTS++ + G IPT+GFN+ V N++ +
Sbjct: 7 SWLSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTV 65
Query: 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLG 128
WD+GGQ + R +W Y + AI++VVD+ D D + +R EL +LN+ + LLV
Sbjct: 66 WDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFA 125
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181
NK D P A+S +T+++GL++I +R+ C N + +DWL + K
Sbjct: 126 NKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNLK 178
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 3/184 (1%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MGL +F LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V
Sbjct: 4 MGL--SFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVE 60
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
N++ +WD+GGQ + R +W Y + +++VVD+ D D + +R ELH +LN+ L
Sbjct: 61 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR 120
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
LLV NK D P A++ +TD++GL S+ R + + +DWL +
Sbjct: 121 DAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 180
Query: 181 KSKS 184
SK+
Sbjct: 181 ASKA 184
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 1/166 (0%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
+EM + ++GL AGKT+++ + G IPT+GFN+ VT N+ ++WDLGGQ
Sbjct: 1 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSI 59
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137
R W Y A++YVVD+ D D + IS+SEL +L + L L+V NK D A+
Sbjct: 60 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 119
Query: 138 SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+ + + +GL ++ DR+ F S T +D ++WLV+ KS+
Sbjct: 120 TPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 1/165 (0%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
+EM + ++GL AGKT+++ + G IPT+GFN+ VT N+ ++WDLGG
Sbjct: 3 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 61
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137
R W Y A++YVVD+ D D + IS+SEL +L + L L+V NK D A+
Sbjct: 62 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 121
Query: 138 SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182
+ + + +GL ++ DR+ F S T +D ++WLV+ KS
Sbjct: 122 TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 166
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 1/177 (0%)
Query: 7 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTI 66
F N + LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V N++
Sbjct: 4 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISF 62
Query: 67 KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLV 126
+WD+GGQ + R +W Y + +++VVD+ D + ++ +R EL +L + L LLV
Sbjct: 63 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 122
Query: 127 LGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
NK D P A++ +TD++GL S+ R + + +DWL +++
Sbjct: 123 FANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 179
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 1/177 (0%)
Query: 7 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTI 66
F N + LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V N++
Sbjct: 5 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISF 63
Query: 67 KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLV 126
+WD+GGQ + R +W Y + +++VVD+ D + ++ +R EL +L + L LLV
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 123
Query: 127 LGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
NK D P A++ +TD++GL S+ R + + +DWL +++
Sbjct: 124 FANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 3/173 (1%)
Query: 11 LRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
L +F +EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD
Sbjct: 5 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWD 63
Query: 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNK 130
+GGQ + R +W Y +++VVD AD D + +R ELH ++N + +L+ NK
Sbjct: 64 VGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 123
Query: 131 IDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTN-IDSVIDWLVKHSKS 182
D P A+ + +++GL I DR SC S + + + WL + KS
Sbjct: 124 QDLPDAMKPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWLTSNYKS 175
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 3/173 (1%)
Query: 11 LRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
L +F +EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD
Sbjct: 4 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWD 62
Query: 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNK 130
+GGQ + R +W Y +++VVD AD D + +R ELH ++N + +L+ NK
Sbjct: 63 VGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 122
Query: 131 IDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTN-IDSVIDWLVKHSKS 182
D P A+ + +++GL I DR SC S + + + WL + KS
Sbjct: 123 QDLPDAMKPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWLTSNYKS 174
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 3/184 (1%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MGL+ + L +LF +EM + ++GL AGKT+++ + G IPT+GFN+ V
Sbjct: 1 MGLYASKL--FSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVETVQ 57
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
N++ +WD+GGQ R RS+W Y R +++V+D+ D + +R + +LN+ L
Sbjct: 58 YKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELR 117
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
LV NK D P A+S +T+++GL SI +R + + ++WL +
Sbjct: 118 NAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNL 177
Query: 181 KSKS 184
K++S
Sbjct: 178 KNQS 181
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 95/179 (53%), Gaps = 3/179 (1%)
Query: 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60
MGL+ + L LF K+++ + ++GL AGKT+++ V G IPT+GFN+ V
Sbjct: 1 MGLYVSRL--FNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVT-TIPTIGFNVETVE 57
Query: 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLS 120
N++ +WD+GGQ + R +W Y +++VVD+ D + + +R ELH ++N+ L
Sbjct: 58 FRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELK 117
Query: 121 GIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+LV NK D P A+S +T+++ L +I +R + DWL H
Sbjct: 118 DAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTH 176
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 6/174 (3%)
Query: 9 NWLRSLFFK-----QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN 63
N S+F K +E+ + ++GL AGKT+++ + G PT+GFN+ ++ N
Sbjct: 3 NIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVETLSYKN 61
Query: 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP 123
+ + +WDLGGQ R W Y +A+++VVD+ D D +S + ELH +L + L
Sbjct: 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 121
Query: 124 LLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 177
LLV NK D+PGALS ++ E+ L + DR S I +DWL+
Sbjct: 122 LLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 175
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 94/172 (54%), Gaps = 1/172 (0%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDL 71
R LF K+EM + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+
Sbjct: 158 RGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDV 216
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131
GGQ + R +W Y + +++VVD+ D + ++ +R EL +L + L LLV NK
Sbjct: 217 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 276
Query: 132 DKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
D P A++ +TD++GL S+ R + + +DWL +++
Sbjct: 277 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 3/167 (1%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
+EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD+GGQ +
Sbjct: 321 KEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 379
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137
R +W Y +++VVD AD D + +R ELH ++N + +L+ NK D P A+
Sbjct: 380 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 439
Query: 138 SKQALTDEMGLKSITDREVCCFMISCKNSTN-IDSVIDWLVKHSKSK 183
+ +++GL I DR SC S + + + WL + KSK
Sbjct: 440 KPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWLTSNYKSK 485
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 3/173 (1%)
Query: 11 LRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
L +F +EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD
Sbjct: 5 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWD 63
Query: 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNK 130
+GG + R +W Y +++VVD AD D + +R ELH ++N + +L+ NK
Sbjct: 64 VGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 123
Query: 131 IDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTN-IDSVIDWLVKHSKS 182
D P A+ + +++GL I DR SC S + + + WL + KS
Sbjct: 124 QDLPDAMKPHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWLTSNYKS 175
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 1/172 (0%)
Query: 13 SLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72
+LF +EM + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+G
Sbjct: 11 NLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVETVQYKNISFTVWDVG 69
Query: 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
GQ R RS+W Y R +++VVD+ D + +R + +LN+ L LV NK D
Sbjct: 70 GQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQD 129
Query: 133 KPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 184
P A+S +T+++GL SI +R + + ++WL K+ +
Sbjct: 130 LPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSLKNST 181
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 90/167 (53%), Gaps = 1/167 (0%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76
++E+ L ++GL NAGKT+++ G + + PT+GFN++ + + +WD+GGQ
Sbjct: 14 ERELRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKS 72
Query: 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
RS W Y + +++VVD+AD + + EL LL + L+G LL+ NK D PGA
Sbjct: 73 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 132
Query: 137 LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
LS A+ + + L SI C S N+ IDWL+ S+
Sbjct: 133 LSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 3/164 (1%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
M + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD+GGQ + R
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP 59
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+W Y +++VVD AD D + +R ELH ++N + +L+ NK D P A+
Sbjct: 60 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 119
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTN-IDSVIDWLVKHSKS 182
+ +++GL I DR SC S + + + WL + KS
Sbjct: 120 HEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWLTSNYKS 162
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 2/170 (1%)
Query: 14 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73
+F K++M + ++GL AGKT+++ + G IPT+GFN+ V N+ +WD+GG
Sbjct: 24 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNICFTVWDVGG 82
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
Q + R +W Y + +++VVD+ D + + S EL +L + L LLV NK D
Sbjct: 83 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM 142
Query: 134 PGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
P A+ LTD++GL+ + R T + +DWL H SK
Sbjct: 143 PNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL-SHELSK 191
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
M + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD+GGQ + R
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP 59
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+W Y +++VVD AD D + +R ELH ++N + +L+ NK D P A+
Sbjct: 60 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 119
Query: 140 QALTDEMGLKSITDR 154
+ +++GL I DR
Sbjct: 120 HEIQEKLGLTRIRDR 134
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 3/165 (1%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD+GG + R
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIR 61
Query: 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138
+W Y +++VVD AD D + +R ELH ++N + +L+ NK D P A+
Sbjct: 62 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 121
Query: 139 KQALTDEMGLKSITDREVCCFMISCKNSTN-IDSVIDWLVKHSKS 182
+ +++GL I DR SC S + + + WL + KS
Sbjct: 122 PHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWLTSNYKS 165
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 3/165 (1%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
EM + ++GL AGKT+++ + G S IPTVGFN+ VT NV +WD+GG + R
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIR 60
Query: 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138
+W Y +++VVD AD D + +R ELH ++N + +L+ NK D P A+
Sbjct: 61 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 120
Query: 139 KQALTDEMGLKSITDREVCCFMISCKNSTN-IDSVIDWLVKHSKS 182
+ +++GL I DR SC S + + + WL + KS
Sbjct: 121 PHEIQEKLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWLTSNYKS 164
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 103 bits (256), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 1/142 (0%)
Query: 13 SLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 72
+LF +EM + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+G
Sbjct: 11 NLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVECVQYCNISFTVWDVG 69
Query: 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
GQ R RS+W Y +++VVD+ D + +R + +LN+ L LV NK D
Sbjct: 70 GQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQD 129
Query: 133 KPGALSKQALTDEMGLKSITDR 154
P A+S +T+++GL SI +R
Sbjct: 130 LPEAMSAAEITEKLGLHSIRNR 151
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 1/163 (0%)
Query: 14 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73
LF K++M + ++GL AGKT+++ + G IPT+GFN+ V N+ +WD+GG
Sbjct: 12 LFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNICFTVWDVGG 70
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
Q R R +W+ Y + +++VVD+ D + + EL +L L LL+ NK D
Sbjct: 71 QDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDL 130
Query: 134 PGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176
P A++ +TD++GL+S+ +R T + +DWL
Sbjct: 131 PNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWL 173
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
M + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GGQ R RS
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVETVQYKNISFTVWDVGGQDRIRS 59
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+W Y R +++VVD+ D + +R + +LN+ L LV NK D P A+S
Sbjct: 60 LWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSA 119
Query: 140 QALTDEMGLKSITDR 154
+T+++GL SI +R
Sbjct: 120 AEITEKLGLHSIRNR 134
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 1/167 (0%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76
++E+ L ++GL NAGKT+++ G + + PT+GFN++ + + +WD+GGQ
Sbjct: 16 ERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKS 74
Query: 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
RS W Y + +++VVD+AD + + EL LL + L+G LL+ NK D PGA
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134
Query: 137 LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
LS A+ + + L SI S ++ IDWL+ S+
Sbjct: 135 LSXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 83/159 (52%), Gaps = 3/159 (1%)
Query: 25 IGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY 84
+GL AGKT+++ + G S IPTVGFN+ VT NV +WD+GGQ + R +W Y
Sbjct: 6 LGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHY 64
Query: 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTD 144
+++VVD AD D + +R ELH ++N +L+ NK D P A + +
Sbjct: 65 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQE 124
Query: 145 EMGLKSITDREVCCFMISCKNSTN-IDSVIDWLVKHSKS 182
++GL I DR SC S + + + WL + KS
Sbjct: 125 KLGLTRIRDRN-WYVQPSCATSGDGLYEGLTWLTSNYKS 162
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 1/167 (0%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76
++E+ L ++GL NAGKT+++ G + + PT+GFN++ + + +WD+GGQ
Sbjct: 16 ERELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKS 74
Query: 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
RS W Y + +++VVD+AD + + EL LL + L+G LL+ NK D PGA
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134
Query: 137 LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
LS A+ + + L SI S ++ IDWL+ S+
Sbjct: 135 LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 1/164 (0%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
M + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GGQ + R
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRP 59
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+W Y + +++VVD+ D + ++ +R EL +L + L LLV NK D P A++
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 119
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+TD++GL S+ R + + +DWL +++
Sbjct: 120 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 1 MGLWEAFLNWLRSLF-----FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN 55
M W+ F W R + + + +L +GL NAGKT+L++++ + + PT
Sbjct: 1 MAGWDIF-GWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT 58
Query: 56 MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLN 115
++ GN+ +DLGG + R +W+ Y V+ IV++VDAADP+ +R EL L N
Sbjct: 59 SEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFN 118
Query: 116 KPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSIT-------DREVCCFMISCKNSTN 168
L +P ++LGNKID P A+S+ L +GL + T R V FM S
Sbjct: 119 IAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178
Query: 169 IDSVIDWLVKH 179
WL ++
Sbjct: 179 YLEAFQWLSQY 189
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 1/166 (0%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
+E + ++GL AGKT+++ + G IPT+GFN+ VT N+ ++WDLGG
Sbjct: 6 REXRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKNLKFQVWDLGGLTSI 64
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137
R W Y A++YVVD+ D D + IS+SEL L + L L+V NK D A
Sbjct: 65 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAX 124
Query: 138 SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+ + +GL ++ DR+ F S T +D +WLV+ KS+
Sbjct: 125 TSSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLKSR 170
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 102/190 (53%), Gaps = 14/190 (7%)
Query: 3 LWEAFLNWLRSL-FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK 61
++ F + L+ L +K+ +L +GL NAGKT+L++++ + +PT+ ++T
Sbjct: 8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTI 66
Query: 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSG 121
+T +DLGG + R +W+ Y A++ IV++VD AD + L S+ EL L+ +++
Sbjct: 67 AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIAN 126
Query: 122 IPLLVLGNKIDKPGALSKQALTDEMG------------LKSITDREVCCFMISCKNSTNI 169
+P+L+LGNKID+P A+S++ L + G LK + R + FM S
Sbjct: 127 VPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGY 186
Query: 170 DSVIDWLVKH 179
W+ ++
Sbjct: 187 GEGFRWMAQY 196
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 13/177 (7%)
Query: 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74
+K+ +L +GL NAGKT+L++++ + +PT+ ++T +T +DLGG
Sbjct: 18 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGH 76
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+ R +W+ Y A++ IV++VD AD + L S+ EL L+ +++ +P+L+LGNKID+P
Sbjct: 77 IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 136
Query: 135 GALSKQALTDEMG------------LKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
A+S++ L + G LK + R + FM S W+ ++
Sbjct: 137 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 193
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 8/166 (4%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80
+L +GL NAGKT+L++++ + + PT ++ GN+ +DLGG + R +
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 61
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
W+ Y V+ IV++VDAADP+ +R EL L N L +P ++LGNKID P A+S+
Sbjct: 62 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEA 121
Query: 141 ALTDEMGLKSIT-------DREVCCFMISCKNSTNIDSVIDWLVKH 179
L +GL + T R V FM S WL ++
Sbjct: 122 ELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 167
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 13/177 (7%)
Query: 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74
+K+ +L +GL NAGKT+L++++ + +PT+ ++T +T +DLGG
Sbjct: 12 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGG 70
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+ R +W+ Y A++ IV++VD AD + L S+ EL L+ +++ +P+L+LGNKID+P
Sbjct: 71 IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 130
Query: 135 GALSKQALTDEMG------------LKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
A+S++ L + G LK + R + FM S W+ ++
Sbjct: 131 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 187
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 87/164 (53%), Gaps = 1/164 (0%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
M + ++GL AGKT+++ + G IPT+GFN+ V N++ +WD+GG + R
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGLDKIRP 61
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+W Y + +++VVD+ D + ++ +R EL +L + L LLV NK D P A++
Sbjct: 62 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 121
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+TD++GL S+ R + + +DWL +++
Sbjct: 122 AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 165
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 95/184 (51%), Gaps = 2/184 (1%)
Query: 1 MGLWEAFLNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV 59
MG W A L L +++ + ++GL NAGKTS++ + G + N+ +
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG-VNLETL 61
Query: 60 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSL 119
N++ ++WDLGGQ R W Y A++YVVD+ D D + +++ EL+ LL++ L
Sbjct: 62 QYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDEL 121
Query: 120 SGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
LL+ NK D P A S+ + +++G+ SI +R S K + +DWLV+
Sbjct: 122 RKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVER 181
Query: 180 SKSK 183
+ +
Sbjct: 182 LREQ 185
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 18 QEMELSLIGLQNAGKTSLVNVV-ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76
+E+ + +GL N+GKT+++N + + S++++PT+GF++ K +++ ++D+ GQ R
Sbjct: 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79
Query: 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSG--IPLLVLGNKIDKP 134
+R++WE Y + AI++V+D++D + +++ EL LLN P + IP+L NK+D
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
Query: 135 GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176
A++ ++ + L++I D+ + +DWL
Sbjct: 140 DAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWL 181
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 13/177 (7%)
Query: 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74
+K+ +L +GL NAGKT+L++++ + +PT+ ++T +T +DLGG
Sbjct: 31 LYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGH 89
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+ R +W+ Y A++ IV++VD AD L S+ EL+ L+ ++S +P+L+LGNKID+
Sbjct: 90 EQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRT 149
Query: 135 GALSKQALTDEMG------------LKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
A+S++ L + G LK + R + FM S WL ++
Sbjct: 150 DAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQY 206
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 1/164 (0%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
+ L ++GL NAGKT+++ G + + PT+GFN++ + + +WD+GG RS
Sbjct: 2 LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRS 60
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
W Y + +++VVD+AD + + EL LL + L+G LL+ NK D PGALS
Sbjct: 61 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC 120
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
A+ + + L SI S ++ IDWL+ S+
Sbjct: 121 NAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 164
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 17/158 (10%)
Query: 11 LRSLFFKQEMELSLIGLQNAGKTSLV------NVVATGGYSEDMIPTVGFNMRKVTKGNV 64
L SLF QE ++ ++GL NAGKT+++ VV T PT+G N+ ++ N
Sbjct: 8 LWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTS-------PTIGSNVEEIVVKNT 60
Query: 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPL 124
+WD+GGQ RS W Y I+ VVD+ D + L+I++ EL+ +L L +
Sbjct: 61 HFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAV 120
Query: 125 LVLGNKIDKPGALSKQALTDEMGLKSITDR----EVCC 158
L+ NK D G ++ ++ + L SI D + CC
Sbjct: 121 LIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCC 158
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 9/177 (5%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQP 75
K ++++ + GL N+GKT+++N V S I TVG+N+ KG V ++D+GG
Sbjct: 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAK 74
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNK-------PSLSGIPLLVLG 128
+FR +WE Y + A+++VVD++D L + +SE+ +L P +P L
Sbjct: 75 KFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFA 134
Query: 129 NKIDKPGALSKQALTDEMGLKSIT-DREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 184
NK+D GA + L + + L ++ D F + T + WL + + +S
Sbjct: 135 NKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 1/155 (0%)
Query: 29 NAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAV 88
NAGKT+++ G + + PT+GFN++ + + +WD+GGQ RS W Y +
Sbjct: 28 NAGKTTILKKF-NGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL 148
+++VVD+AD + EL LL + L+G LL+ NK D PGALS A+ + + L
Sbjct: 87 DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
Query: 149 KSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
SI S ++ IDWL+ S+
Sbjct: 147 DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 17/155 (10%)
Query: 14 LFFKQEMELSLIGLQNAGKTSLV------NVVATGGYSEDMIPTVGFNMRKVTKGNVTIK 67
LF QE ++ ++GL NAGKT+++ VV T PT+G N+ ++ N
Sbjct: 11 LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-------PTIGSNVEEIVINNTRFL 63
Query: 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVL 127
+WD+GGQ RS W Y ++ VVD+ D + +S++R EL+ +L L LL+
Sbjct: 64 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 123
Query: 128 GNKIDKPGALSKQALTDEMGLKSITDR----EVCC 158
NK D ++ ++ + L SI D + CC
Sbjct: 124 ANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 158
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 17/155 (10%)
Query: 14 LFFKQEMELSLIGLQNAGKTSLV------NVVATGGYSEDMIPTVGFNMRKVTKGNVTIK 67
LF QE ++ ++GL NAGKT+++ VV T PT+G N+ ++ N
Sbjct: 11 LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-------PTIGSNVEEIVINNTRFL 63
Query: 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVL 127
+WD+GGQ RS W Y ++ VVD+ D + +S++R EL+ +L L LL+
Sbjct: 64 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 123
Query: 128 GNKIDKPGALSKQALTDEMGLKSITDR----EVCC 158
NK D ++ ++ + L SI D + CC
Sbjct: 124 ANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 158
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 17/152 (11%)
Query: 17 KQEMELSLIGLQNAGKTSLV------NVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70
QE ++ ++GL NAGKT+++ VV T PT+G N+ ++ N +WD
Sbjct: 20 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-------PTIGSNVEEIVINNTRFLMWD 72
Query: 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNK 130
+GGQ RS W Y ++ VVD+ D + +S++R EL+ +L L LL+ NK
Sbjct: 73 IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANK 132
Query: 131 IDKPGALSKQALTDEMGLKSITDR----EVCC 158
D ++ ++ + L SI D + CC
Sbjct: 133 QDVKECMTVAEISQFLKLTSIKDHQWHIQACC 164
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 17/151 (11%)
Query: 18 QEMELSLIGLQNAGKTSLV------NVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDL 71
QE ++ ++GL NAGKT+++ VV T PT+G N+ ++ N +WD+
Sbjct: 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-------PTIGSNVEEIVINNTRFLMWDI 72
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131
GGQ RS W Y ++ VVD+ D + +S++R EL+ +L L LL+ NK
Sbjct: 73 GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQ 132
Query: 132 DKPGALSKQALTDEMGLKSITDR----EVCC 158
D ++ ++ + L SI D + CC
Sbjct: 133 DVKECMTVAEISQFLKLTSIKDHQWHIQACC 163
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 1/166 (0%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
QE+ + L+GL NAGKT+L+ +A+ S + PT GFN++ V + +WD+GGQ +
Sbjct: 16 QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 74
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137
R W Y ++YV+D+AD + EL +LL + LS +P+L+ NK D A
Sbjct: 75 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 134
Query: 138 SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+ + + L +I DR S + ++W+ K+ +K
Sbjct: 135 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 1/166 (0%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
QE+ + L+GL NAGKT+L+ +A+ S + PT GFN++ V + +WD+GGQ +
Sbjct: 15 QEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 73
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137
R W Y ++YV+D+AD + EL +LL + LS +P+L+ NK D A
Sbjct: 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133
Query: 138 SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+ + + L +I DR S + ++W+ K+ +K
Sbjct: 134 PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 1/161 (0%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
E+ + L+GL NAGKT+L+ +A+ S + PT GFN++ V + +WD+GGQ + R
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 62
Query: 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138
W Y ++YV+D+AD + EL +LL + LS +P+L+ NK D A
Sbjct: 63 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 122
Query: 139 KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+ + + L +I DR S + ++W+ K+
Sbjct: 123 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 163
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78
E+ + L+GL NAGKT+L+ +A+ S + PT GFN++ V + +WD+GG + R
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQSQGFKLNVWDIGGLRKIR 62
Query: 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138
W Y ++YV+D+AD + EL +LL + LS +P+L+ NK D A
Sbjct: 63 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 122
Query: 139 KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+ + + L +I DR S + ++W+ K+
Sbjct: 123 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 163
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GK+ L+ A Y++ I T+G F +R ++ N T+KL WD GQ
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
RFR++ Y R I+ V D D D+ + + + +++ ++ + L++GNK D
Sbjct: 70 RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQE-IDRYAMENVNKLLVGNKCD--- 125
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+SK+ +T + G + + S KN+ N++ + K +
Sbjct: 126 LVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKR 173
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQP 75
++L L+G GK+S+V + ++E+ PT+G F ++VT T+K +WD GQ
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISR---SELHDLLNKPSLSGIPLLVLGNKID 132
RF S+ Y R A + V D P + +R ELH+ +K I + ++GNKID
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD----IIIALVGNKID 119
Query: 133 KPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173
++ + E G K ++ + F S K N++ V
Sbjct: 120 XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 10/159 (6%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
RFR++ Y R I+ V D D ++ + + L + +++ + + L++GNK D
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQE-IDRYASENVNKLLVGNKSD--- 125
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVI 173
L+ + + D K D F+ S KN+TN++
Sbjct: 126 -LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
RFR++ Y R I+ V D D ++ + + L + +++ + + L++GNK D
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGNKCD--- 122
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNID 170
L+ + + D K D F+ S KN+TN++
Sbjct: 123 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 157
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 10/159 (6%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
RFR++ Y R I+ V D D ++ + + L + +++ + + L++GNK D
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQE-IDRYASENVNKLLVGNKSD--- 125
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVI 173
L+ + + D K D F+ S KN+TN++
Sbjct: 126 -LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
RFR++ Y R I+ V D D ++ + + L + +++ + + L++GNK D
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGNKCD--- 122
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNID 170
L+ + + D K D F+ S KN+TN++
Sbjct: 123 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 157
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
RFR++ Y R I+ V D D ++ + + L + +++ + + L++GNK D
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGNKCD--- 149
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNID 170
L+ + + D K D F+ S KN+TN++
Sbjct: 150 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 184
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 10/155 (6%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPR 76
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ R
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
FR++ Y R I+ V D D ++ + + L + +++ + + L++GNK D
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGNKCD---- 115
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNID 170
L+ + + D K D F+ S KN+TN++
Sbjct: 116 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 150
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
RFR++ Y R I+ V D D ++ + + L + +++ + + L++GNK D
Sbjct: 86 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGNKCD--- 141
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNID 170
L+ + + D K D F+ S KN+TN++
Sbjct: 142 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 176
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
RFR++ Y R I+ V D D ++ + + L + +++ + + L++GNK D
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGNKCD--- 132
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNID 170
L+ + + D K D F+ S KN+TN++
Sbjct: 133 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 167
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GK L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
RFR++ Y R I+ V D D ++ + + L + +++ + + L++GNK D
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGNKCD--- 132
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNID 170
L+ + + D K D F+ S KN+TN++
Sbjct: 133 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 167
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 19/177 (10%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVT-KGN--VTIKLWDL 71
K +++ ++G GKTSL++ YS+ T+G F ++VT G+ T+++WD
Sbjct: 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDT 65
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVD---AADPDNLSISRSE--LHDLLNKPSLSGIPLLV 126
GQ RF+S+ + R V V D A+ +N+ R E +H +N P P ++
Sbjct: 66 AGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET--FPFVI 123
Query: 127 LGNKIDKPGALSKQALTDEMG---LKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
LGNKID SK+ ++++ KS+ D + F+ S KN+ N+D+ + + + +
Sbjct: 124 LGNKID--AEESKKIVSEKSAQELAKSLGD--IPLFLTSAKNAINVDTAFEEIARSA 176
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 10/157 (6%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
RFR++ Y R I+ V D D ++ + + L + +++ + + L++G K D
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGIKCD--- 124
Query: 136 ALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDS 171
L+ + + D K D F+ S KN+TN++
Sbjct: 125 -LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 160
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 76/171 (44%), Gaps = 22/171 (12%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIK 67
RS FK + +IG N GKT L G + + T+G + R+ + + I+
Sbjct: 26 RSRIFK----IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 81
Query: 68 LWDLGGQPRFR-SMWERYCRAVSAIVYVVDAADPDNLS-----ISRSELHDLLNKPSLSG 121
LWD GQ RFR SM + Y R V A+V+V D + + I + H L N
Sbjct: 82 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAND----- 136
Query: 122 IPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172
IP +++GNK D A+ Q TD + K F S KN + D V
Sbjct: 137 IPRILVGNKCDLRSAI--QVPTD-LAQKFADTHSXPLFETSAKNPNDNDHV 184
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 77/171 (45%), Gaps = 22/171 (12%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIK 67
RS FK + +IG N GKT L G + + T+G + R+ + + I+
Sbjct: 17 RSRIFK----IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 72
Query: 68 LWDLGGQPRFR-SMWERYCRAVSAIVYVVDAADPDNLS-----ISRSELHDLLNKPSLSG 121
LWD GQ RFR SM + Y R V A+V+V D + + I + H L N
Sbjct: 73 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND----- 127
Query: 122 IPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172
IP +++GNK D A+ Q TD + K + F S KN + D V
Sbjct: 128 IPRILVGNKCDLRSAI--QVPTD-LAQKFADTHSMPLFETSAKNPNDNDHV 175
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 15/178 (8%)
Query: 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGY-SEDMIPTVGFNMRK----VTKGNVTIKLW 69
F+ ++ L+G GKT L+ G + + I TVG + R V V +++W
Sbjct: 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 65
Query: 70 DLGGQPRFRSMWERYCRAVSAIVYVVDA---ADPDNLSISRSELHDLLNKPSLSGIPLLV 126
D GQ RFRS+ Y R A++ + D A DN+ +E+H+ + L++
Sbjct: 66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD----VALML 121
Query: 127 LGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 184
LGNK+D ++ + E G K + + S K N+D + K K +S
Sbjct: 122 LGNKVDSA---HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRS 176
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRF 77
L LIG GK+ L+ A Y+E I T+G F +R + TIKL WD GQ RF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
R++ Y R I+ V D D ++ + + L + +++ + + L++GNK D
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGNKCD 114
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMR--KVTKGNVTIKLWDLGGQP 75
+L L+G + GKT +V TG +SE T+G F M+ ++ V +++WD GQ
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
RFR++ + Y R+ + + D + +S + + K + S I L++GNK D
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSF-LSVPHWIEDVRKYAGSNIVQLLIGNKSDLS- 147
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173
L + +L + L D +C S K+S+N++
Sbjct: 148 ELREVSLAEAQSLAEHYDI-LCAIETSAKDSSNVEEAF 184
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 8/155 (5%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
+ +L +G Q GKTS++ + + T+G + T +G V ++LWD GQ
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
RFRS+ Y R +A + V D + + + + D+LN+ I LV GNK D
Sbjct: 61 ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALV-GNKTD-L 118
Query: 135 GALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169
G L K +T E G + + S K NI
Sbjct: 119 GDLRK--VTYEEGXQKAQEYNTXFHETSAKAGHNI 151
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 10/163 (6%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
L+G GK+SL+N T + + T+G +V VT+++WD GQ RFRS
Sbjct: 12 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 71
Query: 80 MWERYCRAVSAIVY---VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ + R + V D+ NLS + E + P ++LGNKID
Sbjct: 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-- 129
Query: 137 LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+Q T+E + + F S K++TN+ + + V+
Sbjct: 130 -ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 171
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 10/168 (5%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQP 75
+++ ++G GKTSL+N +S T+G F ++V + VT+++WD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPS---LSGIPLLVLGNKID 132
RF+S+ + R V V D P+ S + L + S P +VLGNKID
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 133 KPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
++Q T + + F S K + N++ + +++
Sbjct: 129 LE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 10/163 (6%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
L+G GK+SL+N T + + T+G +V VT+++WD GQ RFRS
Sbjct: 14 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 73
Query: 80 MWERYCRAVSAIVY---VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ + R + V D+ NLS + E + P ++LGNKID
Sbjct: 74 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-- 131
Query: 137 LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+Q T+E + + F S K++TN+ + + V+
Sbjct: 132 -ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 173
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 10/168 (5%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQP 75
+++ ++G GKTSL+N +S T+G F ++V + VT+++WD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPS---LSGIPLLVLGNKID 132
RF+S+ + R V V D P+ S + L + S P +VLGNKID
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 133 KPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
++Q T + + F S K + N++ + +++
Sbjct: 129 FE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75
+L +IG GK+SL+ A +S I T+G + + ++ V +++WD GQ
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
RFR++ Y R ++ V D ++ + LH++ + + +++GNK D P
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDP- 126
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
++ + E K + F S K + N++ + + + +
Sbjct: 127 --ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITE 167
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 10/167 (5%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75
++ L+G GK+SL+N T + + T+G +V VT+++WD GQ
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 76 RFRSMWERYCRAVSAIVY---VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
RFRS+ + R + V D+ NLS + E + P ++LGNK D
Sbjct: 72 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTD 131
Query: 133 KPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
+Q T+E + + F S K+STN+ + + V+
Sbjct: 132 ---IKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRR 175
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GK+ L+ + Y+ D I T+G F ++ V T+KL WD GQ
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
RFR++ Y R I+ V D D ++ + + L + +++ + S + L++GNK D
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE-IDRYATSTVLKLLVGNKCD 124
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 10/168 (5%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQP 75
+++ ++G GKTSL+N +S T+G F ++V + VT+++WD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPS---LSGIPLLVLGNKID 132
RF+S+ + R V V D P+ S + L + S P +VLGNKID
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 133 KPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
++Q T + + F S K + N++ + +++
Sbjct: 129 LE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GK+ L+ + Y+ D I T+G F ++ V T+KL WD GQ
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
RFR++ Y R I+ V D D ++ + + L + +++ + S + L++GNK D
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE-IDRYATSTVLKLLVGNKCD 124
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GKT ++ + ++ I T+G F +R + IKL WD GQ
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
RFR++ Y R I+ V D + + R+ + ++ S + + ++LGNK D
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDVN- 126
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
K+ ++ E G K D + S K + N+++ L + K+K
Sbjct: 127 --DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 10/165 (6%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 6 QFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
R+ S+ Y R A + V D + ++ + +++ + +L + S I + + GNK D
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 122
Query: 135 GALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
L+ + D +S D FM S K S N++ + + K
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 10/165 (6%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 6 QFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
R+ S+ Y R A + V D + ++ + +++ + +L + S I + + GNK D
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 122
Query: 135 GALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
L+ + D +S D FM S K S N++ + + K
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GKT ++ + ++ I T+G F +R + IKL WD GQ
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
RFR++ Y R I+ V D + + R+ + ++ S + + ++LGNK D
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDVN- 124
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
K+ ++ E G K D + S K + N+++ L + K+K
Sbjct: 125 --DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 170
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 10/165 (6%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 6 QFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
R+ S+ Y R A + V D + ++ + +++ + +L + S I + + GNK D
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 122
Query: 135 GALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
L+ + D +S D FM S K S N++ + + K
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG GK+ L+ + Y+ D I T+G F ++ V T+KL WD GQ
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
RFR++ Y R I+ V D D ++ + + L + +++ + S + L++GNK D
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE-IDRYATSTVLKLLVGNKCD 137
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 10/165 (6%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
R+ S+ Y R A + V D + ++ + +++ + +L + S I + + GNK D
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 122
Query: 135 GALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
L+ + D +S D FM S K S N++ + + K
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 10/165 (6%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
R+ S+ Y R A + V D + ++ + +++ + +L + S I + + GNK D
Sbjct: 67 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 123
Query: 135 GALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
L+ + D +S D FM S K S N++ + + K
Sbjct: 124 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 166
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 10/165 (6%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 6 QFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
R+ S+ Y R A + V D + ++ + +++ + +L + S I + + GNK D
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 122
Query: 135 GALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
L+ + D +S D FM S K S N++ + + K
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 8/164 (4%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 3 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 62
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
R+ S+ Y R A + V D + D + +++ + +L + S I + + GNK D
Sbjct: 63 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS-PNIVIALAGNKADLA 121
Query: 135 GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
SK+A+ + D + S K + N++ + + K
Sbjct: 122 ---SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 162
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75
M++ LIG GK+ L+ ++ I T+G + + + V ++LWD GQ
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP- 134
RFR++ Y R I+ V D D + + + +N+ + LL++GNK D
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTDERTFT-NIKQWFKTVNEHANDEAQLLLVGNKSDMET 126
Query: 135 ---GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
A +AL E+G+ I S KN N++ + L K + K
Sbjct: 127 RVVTADQGEALAKELGIPFIES--------SAKNDDNVNEIFFTLAKLIQEK 170
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 10/165 (6%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
R+ S+ Y R A + V D + ++ + +++ + +L + S I + + GNK D
Sbjct: 67 ERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 123
Query: 135 GALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
L+ + D +S D F S K S N++ + + K
Sbjct: 124 --LANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAK 166
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 10/165 (6%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 6 QFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
R+ S+ Y R A + V D + ++ + +++ + +L + S I + + GNK D
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 122
Query: 135 GALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
L+ + D +S D FM S K S N++ + + K
Sbjct: 123 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75
M++ LIG GK+ L+ ++ I T+G + + + V ++LWD GQ
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP- 134
RFR++ Y R I+ V D D + + + +N+ + LL++GNK D
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFT-NIKQWFKTVNEHANDEAQLLLVGNKSDMET 139
Query: 135 ---GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
A +AL E+G+ I S KN N++ + L K + K
Sbjct: 140 RVVTADQGEALAKELGIPFIES--------SAKNDDNVNEIFFTLAKLIQEK 183
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 10/167 (5%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75
+++ L+G GK+SL+N T + T+G +V VT+++WD GQ
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 76 RFRSMWERYCRAVSAIVY---VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
RF+S+ + R + V D +NL + E + P +VLGNK+D
Sbjct: 68 RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127
Query: 133 KPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179
K +Q T+E + + + S K+ TN+ + V+
Sbjct: 128 KE---DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQ 171
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 27/173 (15%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQ 74
++++ +IG + GKTSL+ + E TVG + + ++ + +++WD GQ
Sbjct: 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHD-------LLNKPSLSGIPLLVL 127
RF S+ Y R+ I+ V D I++ E D +++K + LL++
Sbjct: 86 ERFNSITSAYYRSAKGIILVYD--------ITKKETFDDLPKWMKMIDKYASEDAELLLV 137
Query: 128 GNKIDKPGALSKQALTDEMGLK---SITDREVCCFMISCKNSTNIDSVIDWLV 177
GNK+D + + +T + G K IT C S K++ N+D + LV
Sbjct: 138 GNKLD---CETDREITRQQGEKFAQQITGMRFC--EASAKDNFNVDEIFLKLV 185
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 17/168 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
LIG GK+ L+ ++ I T+G + + + V ++LWD GQ RFR+
Sbjct: 8 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT 67
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP----G 135
+ Y R I+ V D D + + + +N+ + LL++GNK D
Sbjct: 68 ITTAYYRGAXGIILVYDVTDERTFT-NIKQWFKTVNEHANDEAQLLLVGNKSDXETRVVT 126
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
A +AL E+G+ I S KN N++ + L K + K
Sbjct: 127 ADQGEALAKELGIPFIES--------SAKNDDNVNEIFFTLAKLIQEK 166
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD GQ
Sbjct: 8 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQ 67
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
R+ S+ Y R A + V D + + + +++ + +L + S S I + + GNK D
Sbjct: 68 ERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS-IVIALAGNKAD-- 124
Query: 135 GALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
L+ + + + ++ D FM S K + N++ + + K
Sbjct: 125 --LANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAK 167
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75
M++ LIG GK+ L+ ++ I T+G + + + V +++WD GQ
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP- 134
RFR++ Y R I+ V D D + + + +N+ + LL++GNK D
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFT-NIKQWFKTVNEHANDEAQLLLVGNKSDMET 122
Query: 135 ---GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
A +AL E+G+ I S KN N++ + L K + K
Sbjct: 123 RVVTADQGEALAKELGIPFIES--------SAKNDDNVNEIFFTLAKLIQEK 166
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
+ +L +G Q+ GKTSL+ + T+G + T V ++LWD GQ
Sbjct: 2 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
RFRS+ Y R + V V D + ++ + + D+ + S + ++++GNK D
Sbjct: 62 ERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERG-SDVIIMLVGNKTDLA 120
Query: 135 GALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169
K+ +T E G + + V S K N+
Sbjct: 121 ---DKRQITIEEGEQRAKELSVMFIETSAKTGYNV 152
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 8/164 (4%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTV--GFNMRKVTKGNVTIK--LWDLGGQ 74
+ +L L+G GK+SLV G + E T+ F + V + T+K +WD GQ
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
R+ S+ Y R A + V D + D + +++ + +L + S I + + GNK D
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS-PNIVIALAGNKADLA 123
Query: 135 GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
SK+A+ + D + S K + N++ + + K
Sbjct: 124 ---SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 164
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 10/168 (5%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQP 75
+++ ++G GKTSL+N +S T+G F ++V + VT+++WD G
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPS---LSGIPLLVLGNKID 132
RF+S+ + R V V D P+ S + L + S P +VLGNKID
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 133 KPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180
++Q T + + F S K + N++ + +++
Sbjct: 129 LE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGG 73
++ +L +G Q+ GKTSL+ + T+G + T + ++LWD G
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
Q RFRS+ Y R +A V V D + ++ + + D+ + S + ++++GNK D
Sbjct: 65 QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDL 123
Query: 134 PGALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169
K+ ++ E G + + V S K N+
Sbjct: 124 A---DKRQVSIEEGERKAKELNVMFIETSAKAGYNV 156
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 8/156 (5%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGG 73
++ +L +G Q+ GKTSL+ + T+G + T V ++LWD G
Sbjct: 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
Q RFRS+ Y R + V V D + ++ + + D+ + S + ++++GNK D
Sbjct: 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDL 131
Query: 134 PGALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169
K+ ++ E G + + V S K N+
Sbjct: 132 S---DKRQVSTEEGERKAKELNVMFIETSAKAGYNV 164
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 17/168 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRS 79
LIG GK+ L+ ++ I T+G + + + V +++WD GQ RFR+
Sbjct: 8 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT 67
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP----G 135
+ Y R I+ V D D + + + +N+ + LL++GNK D
Sbjct: 68 ITTAYYRGAXGIILVYDITDERTFT-NIKQWFKTVNEHANDEAQLLLVGNKSDXETRVVT 126
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
A +AL E+G+ I S KN N++ + L K + K
Sbjct: 127 ADQGEALAKELGIPFIES--------SAKNDDNVNEIFFTLAKLIQEK 166
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 10/165 (6%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD G
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
R+ S+ Y R A + V D + ++ + +++ + +L + S I + + GNK D
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD-- 121
Query: 135 GALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
L+ + D +S D FM S K S N++ + + K
Sbjct: 122 --LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 164
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 8/164 (4%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQ 74
+ +L L+G GK+SLV G + E T+G F + V + T+K +WD G
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
R+ S+ Y R A + V D + D + +++ + +L + S I + + GNK D
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS-PNIVIALAGNKADLA 123
Query: 135 GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
SK+A+ + D + S K + N++ + + K
Sbjct: 124 ---SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 164
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
+ +L +G Q+ GKTSL+ + T+G + T V ++LWD GQ
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
RFRS+ Y R + V V D + ++ + + D+ + S + ++++GNK D
Sbjct: 61 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLA 119
Query: 135 GALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169
K+ ++ E G + + V S K N+
Sbjct: 120 ---DKRQVSIEEGERKAKELNVMFIETSAKAGYNV 151
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQP 75
+L LIG + GKTS + A ++ + TVG F ++ V + + IKL WD GQ
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
R+R++ Y R + + D A+ ++ + + + + S ++++GNK D
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFA-AVQDWATQIKTYSWDNAQVILVGNKCDLE- 140
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 177
++ + E G + D F S K + N+ V + LV
Sbjct: 141 --DERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 10/160 (6%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
LIG GKT+L++ +S D T+G F+ R V G +K +WD G R+R+
Sbjct: 15 LIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA 74
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+ Y R + V D ++ L +L + + + +LV GNK D A +
Sbjct: 75 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV-GNKSDLSQA--R 131
Query: 140 QALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
+ T+E + + F+ S +STN++ + ++K
Sbjct: 132 EVPTEEA--RMFAENNGLLFLETSALDSTNVELAFETVLK 169
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 10/165 (6%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
LIG GKT+L++ +S D T+G F+ R V G +K +WD G R+R+
Sbjct: 30 LIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA 89
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139
+ Y R + V D ++ L +L + + + +LV GNK D A +
Sbjct: 90 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV-GNKSDLSQA--R 146
Query: 140 QALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSK 183
+ T+E + + F+ S +STN++ + ++K +K
Sbjct: 147 EVPTEEA--RMFAENNGLLFLETSALDSTNVELAFETVLKEIFAK 189
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 86/181 (47%), Gaps = 10/181 (5%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRK-VTKGNVTI-K 67
+S ++ ++ L G GK+S + + + E++ T+G F M+ + G T+ +
Sbjct: 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQ 80
Query: 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVL 127
LWD GQ RFRS+ + Y R ++ + D + ++ E D++ + +P++++
Sbjct: 81 LWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSF-LNIREWVDMIEDAAHETVPIMLV 139
Query: 128 GNKI---DKPGALSKQALTDEMGLK-SITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
GNK D ++ + G K ++T + C S K+ +NI + L + K +
Sbjct: 140 GNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFC-ETSAKDGSNIVEAVLHLAREVKKR 198
Query: 184 S 184
+
Sbjct: 199 T 199
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN-MRKVTKGN---VTIKLWDLGGQP 75
++ LIG GKT LV G + T+G + M K + N V +++WD GQ
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
RFRS+ + Y R+ +A++ D ++ L ++ S I +LV GNKID
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLV-GNKID 142
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGG 73
+E+++ L+G GK+S+V + ++ PT+G F + V GN K +WD G
Sbjct: 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAG 81
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
Q RF S+ Y R +A V V D D+ + + + L + I + + GNK D
Sbjct: 82 QERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE-LKEHGPENIVMAIAGNKCD 139
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 8/166 (4%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDL 71
F ++ +IG + GKTS + A ++ + TVG F ++ + + + IKL WD
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131
GQ R+R++ Y R + + D + ++ + + + + S +L++GNK
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFN-AVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 132 DKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 177
D ++ ++ E G + F S K++ N+ + LV
Sbjct: 121 DME---DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGG 73
+E+++ L+G GK+S+V + ++ PT+G F + V N K +WD G
Sbjct: 4 RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
Q RFR++ Y R +A + V D + S ++ + +L S I + + GNK D
Sbjct: 64 QERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS-IVVAIAGNKCD- 121
Query: 134 PGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVI 173
L+ E K D F+ S KN+ NI+ +
Sbjct: 122 ---LTDVREVMERDAKDYADSIHAIFVETSAKNAININELF 159
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT---KGN-VTIKLWDLGGQP 75
+++ +IG GK+SL+ + ++ T+G + + T GN + +WD GQ
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
RFR++ Y R ++ V D D + L++L + + I ++GNKIDK
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDK 133
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKG--NVTIKLWDLGGQPRFRS 79
L+G GKTSLV +++ I T+G F +K+ G V + +WD GQ RF +
Sbjct: 11 LLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA 70
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRS---ELHDLLNKPSLSGIPLLVLGNKID 132
+ Y R + + V D D D+ ++ EL +L I L ++GNKID
Sbjct: 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLCIVGNKID 122
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 8/156 (5%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGG 73
++ +L +G Q+ GKTSL+ + T+G + T + ++LWD G
Sbjct: 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
RFRS+ Y R +A V V D + ++ + + D+ + S + ++++GNK D
Sbjct: 72 LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTD- 129
Query: 134 PGALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169
K+ ++ E G + + V S K N+
Sbjct: 130 --LADKRQVSIEEGERKAKELNVMFIETSAKAGYNV 163
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGG 73
++ +L +G Q+ GKTSL+ + T+G + T V ++LWD G
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
RFRS+ Y R + V V D + ++ + + D+ + S + ++++GNK D
Sbjct: 65 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTD- 122
Query: 134 PGALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169
K+ ++ E G + + V S K N+
Sbjct: 123 --LADKRQVSIEEGERKAKELNVMFIETSAKAGYNV 156
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 39/178 (21%)
Query: 25 IGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGN-----------VTIKLWD 70
+G GKTS++ G ++ I TVG + R+ V + N + ++LWD
Sbjct: 17 LGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWD 76
Query: 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLS-----ISRSELHDLLNKPSLSGIPLL 125
G RFRS+ + R + + D + + IS+ ++H P ++
Sbjct: 77 TAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-----IV 131
Query: 126 VLGNKIDKPGALSKQALTDEMGLKSITDREVC------CFMISCKNSTNIDSVIDWLV 177
+ GNK D L D+ +K RE+ F S N TNI I+ L+
Sbjct: 132 LCGNKSD---------LEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGG 73
++ +L +G Q+ GKTSL+ + T+G + T V ++LWD G
Sbjct: 15 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
RFRS+ Y R + V V D + ++ + + D+ + S + ++++GNK D
Sbjct: 75 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTD- 132
Query: 134 PGALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169
K+ ++ E G + + V S K N+
Sbjct: 133 --LADKRQVSIEEGERKAKELNVMFIETSAKAGYNV 166
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTV--GFNMRKVTKG--NVTIKLWDLGGQPRFRS 79
L+G GKTSLV +++ I T+ F +K+ G V + +WD GQ RF +
Sbjct: 11 LLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHA 70
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRS---ELHDLLNKPSLSGIPLLVLGNKID 132
+ Y R + + V D D D+ ++ EL +L I L ++GNKID
Sbjct: 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLCIVGNKID 122
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
+ +L L+G GKT+ V TG + + +PT+G + + +G + +WD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+F + + Y + + D + DL+ IP+++ GNK+D
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVD-- 125
Query: 135 GALSKQALTD-EMGLKSIT---DREVCCFMISCKNSTNIDSVIDWLVK 178
+ D ++ KSI + + + IS K++ N + WL +
Sbjct: 126 -------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 8/169 (4%)
Query: 13 SLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL-- 68
S F ++ +IG + GKTS + A ++ + TVG F ++ + + + IKL
Sbjct: 2 SHXFDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61
Query: 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLG 128
WD G R+R++ Y R + D + ++ + + + + S +L++G
Sbjct: 62 WDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQ-DWSTQIKTYSWDNAQVLLVG 120
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 177
NK D ++ ++ E G + F S K++ N+ + LV
Sbjct: 121 NKCDXE---DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTV--GFNMRKVTKG--NVTIKLWDLGGQPRFRS 79
L+G GKTSLV +++ I T+ F +K+ G V + +WD GQ RF +
Sbjct: 25 LLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHA 84
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRS---ELHDLLNKPSLSGIPLLVLGNKID 132
+ Y R + + V D D D+ ++ EL +L I L ++GNKID
Sbjct: 85 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE----ICLCIVGNKID 136
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 9/123 (7%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVT---KGNVTIKLWDLG 72
+++++ ++G +GKTSL A + + T+G F +R++T NVT+++WD+G
Sbjct: 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIG 64
Query: 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSG--IPLLVL-GN 129
GQ M ++Y ++ V D + + + + + ++ K S PL+ L GN
Sbjct: 65 GQTIGGKMLDKYIYGAQGVLLVYDITNYQSFE-NLEDWYTVVKKVSEESETQPLVALVGN 123
Query: 130 KID 132
KID
Sbjct: 124 KID 126
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIKL--WDLGGQPRFRS 79
+IG GK+ L++ + +D T+G F R V G T+KL WD GQ RFRS
Sbjct: 30 VIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS 89
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ Y R + + V D + + + L D S I +++ GNK D
Sbjct: 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKD 141
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 10/165 (6%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75
+++ ++G GK+S++ G +++D T+G + +V +V + LWD GQ
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
F ++ + Y R A V V D ++ S ++ + IP ++ NKID
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVV--AEVGDIPTALVQNKID--- 120
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV-KH 179
L + +E ++ + S K N+ V +L KH
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 8/157 (5%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPR 76
+L L+G AGK+SLV + E T+G F + + + T+K +WD GQ R
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ S+ Y R +A + V D + + ++ + +L G P +V+ +K
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQEL----QAQGNPNMVMALAGNKSDL 129
Query: 137 LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173
L + +T E + + S K +TN+ +
Sbjct: 130 LDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
+ +L L+G GKT+ V TG + + +PT+G + + +G + +WD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+F + + Y + + D + DL+ IP+++ GNK+D
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVD-- 125
Query: 135 GALSKQALTD-EMGLKSIT---DREVCCFMISCKNSTNIDSVIDWLVK 178
+ D ++ KSI + + + IS K++ N + WL +
Sbjct: 126 -------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDL 71
F +L +IG + GKTS + A ++ + TVG + + T + V +++WD
Sbjct: 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDT 79
Query: 72 GGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131
GQ R+R++ Y R + + D + ++ + + + + S ++++GNK
Sbjct: 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFN-AVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 132 D 132
D
Sbjct: 139 D 139
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 10/161 (6%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGG 73
+E+++ L+G GK+S++ + ++ PT+G F + V N K +WD G
Sbjct: 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 64
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133
RFR++ Y R +A + V D + S ++ + +L S I + + GNK D
Sbjct: 65 LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS-IVVAIAGNKCD- 122
Query: 134 PGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVI 173
L+ E K D F+ S KN+ NI+ +
Sbjct: 123 ---LTDVREVMERDAKDYADSIHAIFVETSAKNAININELF 160
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 13 SLFFK-QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG-FNMRKVTKGNVTIKL-W 69
+L+F+ E+++ ++G ++GK++LV+ TG Y ++ P G F V G + L
Sbjct: 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIR 72
Query: 70 DLGGQPRFR-SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLG 128
D GG P + + W V A+V+V D + + L + + S +P++++G
Sbjct: 73 DEGGPPELQFAAW------VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVG 126
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN-STNIDSVI 173
+ D A + + + D K TD + C + +C N++ V
Sbjct: 127 TQ-DAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVF 171
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 46 EDMIPTVGFNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNL 103
D+ V F R +T IKL WD GQ FRS+ Y R + + V D D
Sbjct: 39 HDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTF 98
Query: 104 SISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISC 163
+ + L D + S S + ++++GNK D S++ + E G + + S
Sbjct: 99 NHLTTWLED-ARQHSNSNMVIMLIGNKSDLE---SRREVKKEEGEAFAREHGLIFMETSA 154
Query: 164 KNSTNIDSVI 173
K ++N++
Sbjct: 155 KTASNVEEAF 164
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 19/173 (10%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV-----TKG---------NVT 65
++L +G GKT+ + ++ I TVG + R+ +G V
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL 125
++LWD GQ RFRS+ + R + + D + R+ + L ++
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 126 VLGNKIDKPGALSKQALTDEMGLKSITDRE-VCCFMISCKNSTNIDSVIDWLV 177
++GNK D P Q +E + + D+ + F S N++ ++ L+
Sbjct: 146 LIGNKADLP----DQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 194
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQ 74
+ +L L+G GKT+ V TG + + + T+G + +G + +WD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+F + + Y + + D + DL+ IP+++ GNK+D
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVD-- 125
Query: 135 GALSKQALTD-EMGLKSIT---DREVCCFMISCKNSTNIDSVIDWLVK 178
+ D ++ KSI + + + IS K++ N + WL +
Sbjct: 126 -------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 19/168 (11%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD GQ
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+F + + Y + + D + DL+ IP+++ GNK+D
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVD-- 118
Query: 135 GALSKQALTD-EMGLKSIT---DREVCCFMISCKNSTNIDSVIDWLVK 178
+ D ++ KSI + + + IS K++ N + WL +
Sbjct: 119 -------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 159
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 19/168 (11%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+F + + Y + + D + DL+ IP+++ GNK+D
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVD-- 125
Query: 135 GALSKQALTD-EMGLKSIT---DREVCCFMISCKNSTNIDSVIDWLVK 178
+ D ++ KSI + + + IS K++ N + WL +
Sbjct: 126 -------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 19/168 (11%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+F + + Y + + D + DL+ IP+++ GNK+D
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVD-- 125
Query: 135 GALSKQALTD-EMGLKSIT---DREVCCFMISCKNSTNIDSVIDWLVK 178
+ D ++ KSI + + + IS K++ N + WL +
Sbjct: 126 -------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 19/168 (11%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD GQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+F + + Y + + D + DL+ IP+++ GNK+D
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVD-- 130
Query: 135 GALSKQALTD-EMGLKSIT---DREVCCFMISCKNSTNIDSVIDWLVK 178
+ D ++ KSI + + + IS K++ N + WL +
Sbjct: 131 -------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
LIG GK++L++ ++ + T+G F R + TIK +WD GQ R+R+
Sbjct: 25 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRA 84
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R + V D A +N+ EL D + S I ++++GNK D
Sbjct: 85 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL 140
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLV 177
+ TDE ++ ++ F+ S +STN+++ ++
Sbjct: 141 --RAVPTDEA--RAFAEKNGLSFIETSALDSTNVEAAFQTIL 178
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 16/162 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
LIG GK++L++ ++ + T+G F R + TIK +WD GQ R+R+
Sbjct: 34 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRA 93
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R + V D A +N+ EL D + S I ++++GNK D
Sbjct: 94 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL 149
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLV 177
+ TDE ++ ++ F+ S +STN+++ ++
Sbjct: 150 --RAVPTDEA--RAFAEKNGLSFIETSALDSTNVEAAFQTIL 187
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 19/168 (11%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+F + + Y + + D + DL+ IP+++ GNK+D
Sbjct: 70 EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVD-- 125
Query: 135 GALSKQALTD-EMGLKSIT---DREVCCFMISCKNSTNIDSVIDWLVK 178
+ D ++ KSI + + + IS K++ N + WL +
Sbjct: 126 -------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMR--KVTKGNVTIKLWDLGGQPRFRS 79
+IG GK+ L++ + D T+G F R +V+ + +++WD GQ RFR+
Sbjct: 20 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 79
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ Y R + + V D + S L D N + + + ++++GNK D
Sbjct: 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKAD 131
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+F + + Y + D + DL+ IP+++ GNK+D
Sbjct: 70 EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVD-- 125
Query: 135 GALSKQALTD-EMGLKSIT---DREVCCFMISCKNSTNIDSVIDWLVK 178
+ D ++ KSI + + + IS K++ N + WL +
Sbjct: 126 -------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L L+G GKT+++ V+A Y E +PTV N + + V + LWD G P +
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSIS----RSELHDLLNKPSLSGIPLLVLGNKID 132
++ A++ D + P+ + + R+E+ D PS +L++G K D
Sbjct: 73 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC--PSTR---VLLIGCKTD 126
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRS 79
+IG GK+ L++ + +D T+G F + + G V +++WD GQ RFRS
Sbjct: 15 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 74
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ Y R + + V D + + + L D S I +++ GNK D
Sbjct: 75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKD 126
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 19/166 (11%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNV-TI 66
R L +K + LIG GKT+ +N V G + ++ TVG VT +GNV
Sbjct: 8 RELTYK----ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKF 63
Query: 67 KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIP 123
+WD GQ + + + Y S + D NL+ E ++ + P
Sbjct: 64 NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEA----P 119
Query: 124 LLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169
++V NKID ++Q ++ ++ ++ + + F IS K + N
Sbjct: 120 IVVCANKID---IKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNF 162
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRS 79
+IG GK+ L++ + +D T+G F + + G V +++WD GQ RFRS
Sbjct: 16 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 75
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ Y R + + V D + + + L D S I +++ GNK D
Sbjct: 76 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKD 127
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMR--KVTKGNVTIKLWDLGGQPRFRS 79
+IG GK+ L++ + D T+G F R +V+ + +++WD GQ RFR+
Sbjct: 35 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRA 94
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ Y R + + V D + S L D N + + + +L+ GNK D
Sbjct: 95 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILI-GNKAD 146
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L L+G GKT+++ V+A Y E +PTV N + + V + LWD G P +
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSIS----RSELHDLLNKPSLSGIPLLVLGNKID 132
++ A++ D + P+ + + R+E+ D PS +L++G K D
Sbjct: 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC--PSTR---VLLIGCKTD 142
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L L+G GKT+++ V+A Y E +PTV N + + V + LWD G P +
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSIS----RSELHDLLNKPSLSGIPLLVLGNKID 132
++ A++ D + P+ + + R+E+ D PS +L++G K D
Sbjct: 72 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC--PSTR---VLLIGCKTD 125
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQ 74
+ +++ L+G GKTSL+ V A G + E PTV + + KG V + +WD GQ
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + S ++ D P++ + + +N +P++V+G K D
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNH-FCKKVPIIVVGCKTD 149
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 19/168 (11%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
++ + + Y + + D + DL+ IP+++ GNK+D
Sbjct: 70 EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVD-- 125
Query: 135 GALSKQALTD-EMGLKSIT---DREVCCFMISCKNSTNIDSVIDWLVK 178
+ D ++ KSI + + + IS K++ N + WL +
Sbjct: 126 -------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVT-KGNVTIK--LW 69
++ ++ LIG GK++L++ ++ + T+G F + + K N IK +W
Sbjct: 3 YYDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIW 62
Query: 70 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGN 129
D GQ R+R++ Y R + V D ++ L +L + S I +L++GN
Sbjct: 63 DTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNAD-SNIVILLVGN 121
Query: 130 KID 132
K D
Sbjct: 122 KSD 124
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 9/168 (5%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT---KGNVTIKLWDLGGQPRFR 78
+++ G GK+SLV G + E IPTV R+V K T+++ D G +F
Sbjct: 6 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP 65
Query: 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLN-KPSLSGIPLLVLGNKIDKPGAL 137
+M A + V +L + + K + IP++++GNK D+ +
Sbjct: 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR 125
Query: 138 SKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKHSKSKS 184
Q+ E ++ C FM S K + N+ + L+ K ++
Sbjct: 126 EVQSSEAEALARTWK----CAFMETSAKLNHNVKELFQELLNLEKRRT 169
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
LIG GK++L++ ++ + T+G F R + TIK +WD GQ R+R
Sbjct: 10 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR 69
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R + V D A +N+ EL D + S I ++++GNK D
Sbjct: 70 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL 125
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNID 170
+ TDE ++ ++ F+ S +STN++
Sbjct: 126 --RAVPTDEA--RAFAEKNNLSFIETSALDSTNVE 156
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 13/164 (7%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQP 75
+L L+G GKT+ V TG + + I T+G + ++ G + +WD G
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID-KP 134
+F + + Y + + D + DL+ IP+++ GNK+D K
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDVKE 123
Query: 135 GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ + +T + + + IS K++ N + WL +
Sbjct: 124 RKVKAKTITFHR------KKNLQYYDISAKSNYNFEKPFLWLAR 161
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 11/163 (6%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQP 75
+L L+G GKT+ V TG + + I T+G + ++ G + +WD G
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+F + + Y + + D + DL+ IP+++ GNK+D
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVD--- 119
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
K+ + + + + IS K++ N + WL +
Sbjct: 120 --VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 160
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Query: 46 EDMIPTVGFNMRKVTKGNVTIKL--WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNL 103
D+ V F R V IKL WD GQ FRS+ Y R + + V D +
Sbjct: 50 HDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 109
Query: 104 SISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISC 163
+ S L D S S + ++++GNK D S++ + E G + + S
Sbjct: 110 NHLTSWLEDARQHSS-SNMVIMLIGNKSDLE---SRRDVKREEGEAFAREHGLIFMETSA 165
Query: 164 KNSTNIDSVI 173
K + N++
Sbjct: 166 KTACNVEEAF 175
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT---KGNVTIKLWDLGGQPRFRSM 80
++G + GKTSL + G +SE PTV K+ K + L D GQ + +
Sbjct: 29 ILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL 88
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ V V V + + S L + +P++++GNK D
Sbjct: 89 PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKAD 140
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 19/173 (10%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV-----TKG---------NVT 65
++L +G GKT+ + ++ I TVG + R+ T+G V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL 125
++LWD G RFRS+ + R + + D + R+ + L ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 126 VLGNKIDKPGALSKQALTDEMGLKSITDRE-VCCFMISCKNSTNIDSVIDWLV 177
++GNK D P Q +E + + ++ + F S N++ ++ L+
Sbjct: 132 LIGNKADLP----DQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
+ +L L+G GKT+ V TG + + T+G + + +G + +WD GQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+F + + Y + + D + DL+ IP+++ GNK+D
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVD-- 130
Query: 135 GALSKQALTD-EMGLKSIT---DREVCCFMISCKNSTNIDSVIDWLVK 178
+ D ++ KSI + + + IS K++ N + WL +
Sbjct: 131 -------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD G
Sbjct: 12 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 71
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+F + + Y + + D + DL+ IP+++ GNK+D
Sbjct: 72 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVD-- 127
Query: 135 GALSKQALTD-EMGLKSIT---DREVCCFMISCKNSTNIDSVIDWLVK 178
+ D ++ KSI + + + IS K++ N + WL +
Sbjct: 128 -------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 168
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD G
Sbjct: 6 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+F + + Y + + D + DL+ IP+++ GNK+D
Sbjct: 66 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVD-- 121
Query: 135 GALSKQALTD-EMGLKSIT---DREVCCFMISCKNSTNIDSVIDWLVK 178
+ D ++ KSI + + + IS K++ N + WL +
Sbjct: 122 -------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 162
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 70/173 (40%), Gaps = 19/173 (10%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV-----TKG---------NVT 65
++L +G GKT+ + ++ I TVG + R+ T+G V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL 125
++LWD G RFRS+ + R + + D + R+ + L ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 126 VLGNKIDKPGALSKQALTDEMGLKSITDRE-VCCFMISCKNSTNIDSVIDWLV 177
++GNK D P Q +E + + ++ + F S N++ ++ L+
Sbjct: 132 LIGNKADLP----DQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 17/166 (10%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQP 75
+L L+G GKT+ V TG + + I T+G + ++ G + +WD G
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+F + + Y + + D + DL+ IP+++ GNK+D
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVD--- 127
Query: 136 ALSKQALTDEMGLKSIT---DREVCCFMISCKNSTNIDSVIDWLVK 178
++ K+IT + + + IS K++ N + WL +
Sbjct: 128 -----VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 168
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 22/170 (12%)
Query: 25 IGLQNAGKTSLVNVVATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQP---RFR 78
+G GKT ++ + D +PTV F+ V G+ V + LWD GQ R R
Sbjct: 12 VGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
Query: 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138
+ R ++ A +N I + L +L K GIP++++G K+D
Sbjct: 72 PLSYRGADVFLLAFSLISKASYEN--IHKKWLPEL--KHYAPGIPIVLVGTKLDLRD--D 125
Query: 139 KQALTDEMGLKSITDRE----------VCCFMISCKNSTNIDSVIDWLVK 178
KQ L D G SIT + V S K N+ +V D ++
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIR 175
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
++ ++G GKT+L++V A + E+ +PTV N ++ + + LWD G P +
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 84
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNL 103
++ A++ D + P+ L
Sbjct: 85 DNVRPLSYPDSDAVLICFDISRPETL 110
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 19/173 (10%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV-----TKG---------NVT 65
++L +G GKT+ + ++ I TVG + R+ T+G V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL 125
++LWD G RFRS+ + R + D + R+ L ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 126 VLGNKIDKPGALSKQALTDEMGLKSITDRE-VCCFMISCKNSTNIDSVIDWLV 177
++GNK D P Q +E + + ++ + F S N++ ++ L+
Sbjct: 132 LIGNKADLP----DQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 24/175 (13%)
Query: 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIK---- 67
+L QE+++ LIG AGKTSL+ + + T G N+ VTK IK
Sbjct: 34 EALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNV--VTKQAPNIKGLEN 91
Query: 68 ----------LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKP 117
WD GGQ + + + S + ++D+ N + K
Sbjct: 92 DDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKS 151
Query: 118 SLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172
P++V+ NKID+ + + + +I +R ISCKN ++S+
Sbjct: 152 -----PVIVVMNKIDENPSYNIEQKKINERFPAIENR---FHRISCKNGDGVESI 198
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
++ ++G GKT+L++V A + E+ +PTV N ++ + + LWD G P +
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNL 103
++ A++ D + P+ L
Sbjct: 69 DNVRPLSYPDSDAVLICFDISRPETL 94
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 19/168 (11%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQ 74
+ +L L+G GKT+ V TG + + + T+G + + +G + +WD G
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
+F + + Y + + D + DL+ IP+++ GNK+D
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCENIPIVLCGNKVD-- 125
Query: 135 GALSKQALTD-EMGLKSIT---DREVCCFMISCKNSTNIDSVIDWLVK 178
+ D ++ KSI + + + IS K++ N + WL +
Sbjct: 126 -------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 166
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 16/158 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
LIG GK++L++ ++ + T+G F R + TIK +WD G R+R+
Sbjct: 13 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 72
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R + V D A +N+ EL D + S I ++++GNK D
Sbjct: 73 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL 128
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVI 173
+ TDE ++ ++ F+ S +STN+++
Sbjct: 129 --RAVPTDEA--RAFAEKNGLSFIETSALDSTNVEAAF 162
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 8/164 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQPRFRSM 80
++G GK++L + ED PT + RK V G V I + D GQ + ++
Sbjct: 9 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 68
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
+ Y R+ + V + ++ + + +L +P L++GNK D +Q
Sbjct: 69 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED--KRQ 126
Query: 141 ALTDEMGLKSITDR-EVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
+E K+ D+ V S K N+D V L++ +++
Sbjct: 127 VSVEEA--KNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
++ ++G GKT+L++V A + E+ +PTV N ++ + + LWD G P +
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNL 103
++ A++ D + P+ L
Sbjct: 90 DNVRPLSYPDSDAVLICFDISRPETL 115
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 6/163 (3%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQPRFRSM 80
++G GK++L + ED PT + RK V G V I + D GQ + ++
Sbjct: 23 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 82
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
+ Y R+ + V + ++ + + +L +P L++GNK D K+
Sbjct: 83 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE---DKR 139
Query: 141 ALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
++ E V S K N+D V L++ +++
Sbjct: 140 QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 6/163 (3%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQPRFRSM 80
++G GK++L + ED PT + RK V G V I + D GQ + ++
Sbjct: 11 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 70
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
+ Y R+ + V + ++ + + +L +P L++GNK D K+
Sbjct: 71 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE---DKR 127
Query: 141 ALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
++ E V S K N+D V L++ +++
Sbjct: 128 QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
LIG GK++L++ ++ + T+G F R + TIK +WD G R+R+
Sbjct: 34 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 93
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R + V D A +N+ EL D + S I ++++GNK D
Sbjct: 94 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL 149
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLV 177
+ TDE ++ ++ F+ S +STN+++ ++
Sbjct: 150 --RAVPTDEA--RAFAEKNGLSFIETSALDSTNVEAAFQTIL 187
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 19/173 (10%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV-----TKG---------NVT 65
++L +G GKT+ + ++ I TVG + R+ T+G V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL 125
++LWD G RFRS+ + R + D + R+ L ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 126 VLGNKIDKPGALSKQALTDEMGLKSITDRE-VCCFMISCKNSTNIDSVIDWLV 177
++GNK D P Q +E + + ++ + F S N++ ++ L+
Sbjct: 132 LIGNKADLP----DQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLL 180
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGI 122
N+ +WD GQ R+ S+ Y R + + V D ++ + L +++ ++ L K S + I
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL--KISSNYI 149
Query: 123 PLLVLGNKIDK 133
+LV NKIDK
Sbjct: 150 IILV-ANKIDK 159
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 6/163 (3%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQPRFRSM 80
++G GK++L + ED PT + RK V G V I + D GQ + ++
Sbjct: 19 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 78
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
+ Y R+ + V + ++ + + +L +P L++GNK D K+
Sbjct: 79 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE---DKR 135
Query: 141 ALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
++ E V S K N+D V L++ +++
Sbjct: 136 QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 36/177 (20%)
Query: 25 IGLQNAGKTSLVNVVATGGYSEDMIPTV--GFNMRKVTKGN-VTIKLWDLGGQPRFRSMW 81
+G GKT ++ + + D +PTV F+ V GN V + LWD GQ + +
Sbjct: 12 VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLR 71
Query: 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNK--PSL----SGIPLLVLGNK----- 130
R + IS++ ++ K P L G+P++++G K
Sbjct: 72 PLSYRGADVFILAFSL-------ISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124
Query: 131 -----IDKPGALSKQALTDEMG--LKSITDREVCCFMISCKNST--NIDSVIDWLVK 178
ID PGA+ +T G LK + + I C + T N+ +V D +K
Sbjct: 125 DKQFFIDHPGAV---PITTNQGEELKKLIGSPI---YIECSSKTQQNVKAVFDAAIK 175
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 19/172 (11%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
+E +L ++G GK++L G + E PT+ + RK V +++ D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 75 PRFRSMWERYCRAVS--AIVYVVDAADPDNLSISRSELHDL----LNKPSLSGIPLLVLG 128
+F +M + Y + A+VY + A N +L DL L +P++++G
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFN------DLQDLREQILRVKDTDDVPMILVG 115
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKH 179
NK D ++ + E G C F+ S K+ N++ + LV+
Sbjct: 116 NKCDLE---DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQ 164
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 19/172 (11%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
+E +L ++G GK++L G + E PT+ + RK V +++ D G
Sbjct: 4 REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 75 PRFRSMWERYCRAVS--AIVYVVDAADPDNLSISRSELHDL----LNKPSLSGIPLLVLG 128
+F +M + Y + A+VY + A N +L DL L +P++++G
Sbjct: 64 EQFTAMRDLYMKNGQGFALVYSITAQSTFN------DLQDLREQILRVKDTDDVPMILVG 117
Query: 129 NKIDKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKH 179
NK D ++ + E G C F+ S K+ N++ + LV+
Sbjct: 118 NKCDLE---DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQ 166
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRS 79
+IG GK+ L++ + +D T+G F + + G V +++WD G RFRS
Sbjct: 13 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRS 72
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ Y R + + V D + + + L D S I +++ GNK D
Sbjct: 73 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKD 124
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 7/164 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQPRFRSM 80
++G GK++L + ED PT + RK V G V I + D G + ++
Sbjct: 12 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAI 71
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLN-KPSLSGIPLLVLGNKIDKPGALSK 139
+ Y R+ + V + ++ + + +L K IPLLV+GNK D +
Sbjct: 72 RDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE--RR 129
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
Q +E K+ + V S K N+D V L++ ++K
Sbjct: 130 QVPVEEARSKA-EEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 7/164 (4%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQPRFRSM 80
++G GK++L + ED PT + RK V G V I + D G + ++
Sbjct: 8 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAI 67
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLN-KPSLSGIPLLVLGNKIDKPGALSK 139
+ Y R+ + V + ++ + + +L K IPLLV+GNK D +
Sbjct: 68 RDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE--RR 125
Query: 140 QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
Q +E K+ + V S K N+D V L++ ++K
Sbjct: 126 QVPVEEARSKA-EEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 14 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMR--KVTKGNVTIKLW 69
L FK + LIG GK++L++ ++ D T+G F R ++ + ++W
Sbjct: 12 LLFK----IVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIW 67
Query: 70 DLGGQPRFRSMWERYCR-AVSA-IVY-VVDAADPDNLSISRSELHDLLNKPSLSGIPLLV 126
D GQ R+R++ Y R AV A IVY + ++ +N + SEL + + + + +
Sbjct: 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD----DNVAVGL 123
Query: 127 LGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 177
+GNK D +A+ E + ++ S NS N+D + L+
Sbjct: 124 IGNKSD---LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI 171
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 14/162 (8%)
Query: 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79
++++G + GKT+L++ + +E T +VT + I D G F +
Sbjct: 11 VTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT 70
Query: 80 MWERYCRAVSAIVYVVDAAD---PDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
M R + ++ VV A D P + + +N + +P++V NK+DKP A
Sbjct: 71 MRARGAQVTDIVILVVAADDGVMPQTV--------EAINHAKAANVPIIVAINKMDKPEA 122
Query: 137 LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ + + M ++ E I CK S +D L++
Sbjct: 123 NPDRVMQELMEY-NLVPEEWGGDTIFCKLSAKTKEGLDHLLE 163
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 16/158 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
LIG GK++L++ ++ + T+G F R + TIK +WD G R+R+
Sbjct: 10 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 69
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R + V D A +N+ EL D + S I + ++GNK D
Sbjct: 70 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIXLVGNKSDLRHL 125
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVI 173
+ TDE ++ ++ F+ S +STN+++
Sbjct: 126 --RAVPTDEA--RAFAEKNGLSFIETSALDSTNVEAAF 159
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 16/158 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQPRFRS 79
LIG GK++L++ ++ + T+G F R + TIK +WD G R+R+
Sbjct: 16 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 75
Query: 80 MWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136
+ Y R + V D A +N+ EL D + S I + ++GNK D
Sbjct: 76 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIXLVGNKSDLRHL 131
Query: 137 LSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVI 173
+ TDE ++ ++ F+ S +STN+++
Sbjct: 132 --RAVPTDEA--RAFAEKNGLSFIETSALDSTNVEAAF 165
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 18/157 (11%)
Query: 32 KTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAV 88
K++L TG + E PT+ RK V +++ D G +F SM + Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID-----KPGALSKQALT 143
+ V + + + ++ +P++++GNK+D + + +AL
Sbjct: 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA 135
Query: 144 DEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVKH 179
+E G C FM S K+ T +D + +V+
Sbjct: 136 EEWG---------CPFMETSAKSKTMVDELFAEIVRQ 163
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+ +M ++Y R + V + + + +P++++GNK D P
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 136 AL--SKQA 141
+KQA
Sbjct: 124 RTVDTKQA 131
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
+E +L ++G GK++L G + E PT+ + RK V +++ D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 75 PRFRSMWERYCRAVS--AIVYVVDAADPDNLSISRSELHDL----LNKPSLSGIPLLVLG 128
+F +M + Y + A+VY + A N +L DL L +P++++G
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFN------DLQDLREQILRVKDTEDVPMILVG 115
Query: 129 NKID 132
NK D
Sbjct: 116 NKCD 119
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 3/113 (2%)
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL 125
+ + D GQ F +M E+Y R + V D + +L P++
Sbjct: 55 LDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMI 114
Query: 126 VLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178
++GNK D ++ +T E G + +V S K N+D LV+
Sbjct: 115 LIGNKADLD---HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVR 164
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
+E +L ++G GK++L G + ++ PT+ + RK V +++ D G
Sbjct: 2 REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 75 PRFRSMWERYCRAVS--AIVYVVDAADPDNLSISRSELHDL----LNKPSLSGIPLLVLG 128
+F +M + Y + A+VY + A N +L DL L +P++++G
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFN------DLQDLREQILRVKDTEDVPMILVG 115
Query: 129 NKID 132
NK D
Sbjct: 116 NKCD 119
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 8/162 (4%)
Query: 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGNVTIK--LWDLGGQP 75
++ LIG GK++L++ T ++ + T+G F R + N IK +WD G
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
R+R++ Y R + V D + + L +L + + ++GNK D
Sbjct: 71 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENAD-DNVAVGLIGNKSDL-- 127
Query: 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 177
A + TDE ++ + ++ S NS N+D L+
Sbjct: 128 AHLRAVPTDEAKNFAM-ENQMLFTETSALNSDNVDKAFRELI 168
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 18/155 (11%)
Query: 32 KTSLVNVVATGGYSEDMIPTVGFNMRKVT---KGNVTIKLWDLGGQPRFRSMWERYCRAV 88
K+SLV G + + IPT+ R+V K T+++ D G +F +M
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 89 SAIVYVVDAADPDNLSISRSELHDLLN-----KPSLSGIPLLVLGNKIDKPGALSKQALT 143
A + V +L EL + K S+ IP++++GNK D+ Q
Sbjct: 81 HAFILVFSVTSKQSL----EELGPIYKLIVQIKGSVEDIPVMLVGNKCDET-----QREV 131
Query: 144 DEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLV 177
D +++ C FM S K + N+ + L+
Sbjct: 132 DTREAQAVAQEWKCAFMETSAKMNYNVKELFQELL 166
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 6/163 (3%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGN-VTIKLWDLGGQPRFRSM 80
++G GK++L + ED PT + RK V G V I + D G + ++
Sbjct: 11 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAI 70
Query: 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ 140
+ Y R+ + V + ++ + + +L +P L++GNK D K+
Sbjct: 71 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE---DKR 127
Query: 141 ALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183
++ E V S K N+D V L++ +++
Sbjct: 128 QVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 50 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNL 103
PT G + T ++ K++D+GGQ R W V+AI++ V +D D +
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQV 219
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+PT G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 178 VPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 230
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSM 80
L+G GKTSLV T GY + IPT N V + V ++L D GQ F +
Sbjct: 25 LVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL 84
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+ +M ++Y R + V + + + +P++++GNK D P
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 136 AL--SKQA 141
+KQA
Sbjct: 124 RTVDTKQA 131
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + G + E +PTV N +V V + LWD GQ +
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 78 RSMWERYCRAVSAIVYVVDAAD-PDNL-SISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ S +V + + D PD+L ++ + ++L+ G+P++++G K+D
Sbjct: 72 DRL-RPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLH--FCQGVPIILVGCKVD 125
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+ +M ++Y R + V + + + +P++++GNK D G
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 136 AL--SKQA 141
S+QA
Sbjct: 123 RTVESRQA 130
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 22 LSLIGLQNAGKTSLVNVVA--TGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--- 76
+ ++G N+GKTSL N + T + T+ + N I L D G R
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP 241
Query: 77 -------FRSMWERYCRAVSAIVYVVDAADPDNLSI-SRSELHDLLNKPSLSGIPLLVLG 128
F ++ E + A++ V+D+ +NL I + ++L + +SG P+LV
Sbjct: 242 PQIVDAFFVTLSE--AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL 299
Query: 129 NKIDK 133
NKIDK
Sbjct: 300 NKIDK 304
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 11 LRSLFFK-QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTI 66
+ +L+F+ Q ++ ++G GKT L+ T +S + IPTV N V V +
Sbjct: 4 MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNL 63
Query: 67 KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLV 126
LWD GQ + + + P + R++ + + + P+++
Sbjct: 64 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIIL 122
Query: 127 LGNKID 132
+G K+D
Sbjct: 123 VGTKLD 128
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 14/180 (7%)
Query: 13 SLFFKQEME--LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG---FNMRKVTKGNVTIK 67
+L+F+ +E L+++G + AGK++L T + + P + + V V ++
Sbjct: 13 NLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLR 72
Query: 68 LWDLGGQPRFRSMWERYCRAVSA--IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL 125
+ D R+ ERY A +VY VD+ + S S EL L K + IP L
Sbjct: 73 VMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPAL 131
Query: 126 VLGNKIDKPGALSKQALTDEMGLKSITDREVCCF--MISCKNSTNIDSVIDWLVKHSKSK 183
+LGNK+D + +T G+ ++ R C F + +C + ++ V V+ ++ +
Sbjct: 132 LLGNKLDMA---QYRQVTKAEGV-ALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRF 77
+++++G ++ GK+SL G + + PT+ K+ N ++L D GQ +
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 67
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ Y ++ + V + + + LL+ IP++++GNK D
Sbjct: 68 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
Related Gtp-Binding Protein C
Length = 196
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVT------IKLWDLGGQ--- 74
L+GL+ +GK+S+ VV + + N K+ K +++ ++WD GQ
Sbjct: 25 LMGLRRSGKSSIQKVVFHKMSPNETLFLESTN--KIYKDDISNSSFVNFQIWDFPGQMDF 82
Query: 75 --PRFRSMWERYCRAVSAIVYVVDAAD 99
P F +E R A++YV+DA D
Sbjct: 83 FDPTFD--YEMIFRGTGALIYVIDAQD 107
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRF 77
+++++G ++ GK+SL G + + PT+ K+ N ++L D GQ +
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 67
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ Y ++ + V + + + LL+ IP++++GNK D
Sbjct: 68 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G + GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ +M ++Y R + V + + + +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRF 77
+++++G ++ GK+SL G + + PT+ K+ N ++L D GQ +
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ Y ++ + V + + + LL+ IP++++GNK D
Sbjct: 63 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 117
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRF 77
+++++G ++ GK+SL G + + PT+ K+ N ++L D GQ +
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 65
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ Y ++ + V + + + LL+ IP++++GNK D
Sbjct: 66 SIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 9/134 (6%)
Query: 50 PTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSIS 106
PT+ + RK T+ + + + D GQ F +M E+Y R + V D +
Sbjct: 49 PTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFE-H 107
Query: 107 RSELHDL-LNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165
H L L P++++ NK+D + + +T + G + T + S K+
Sbjct: 108 VDRFHQLILRVKDRESFPMILVANKVD---LMHLRKVTRDQGKEMATKYNIPYIETSAKD 164
Query: 166 ST-NIDSVIDWLVK 178
N+D LV+
Sbjct: 165 PPLNVDKTFHDLVR 178
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ +M ++Y R + V + + + +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 22 LSLIGLQNAGKTSLVNVVA--TGGYSEDMIPTVGFNMRKVTKGNVTIKLWDL-----GGQ 74
+ ++G N+GKTSL N + T + T+ + N I L D G
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVSFIRGIP 241
Query: 75 PR-----FRSMWERYCRAVSAIVYVVDAADPDNLSI-SRSELHDLLNKPSLSGIPLLVLG 128
P+ F ++ E + A++ V+D+ +NL I + ++L + +SG P+LV
Sbjct: 242 PQIVDAFFVTLSE--AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL 299
Query: 129 NKIDK 133
NKIDK
Sbjct: 300 NKIDK 304
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD GQ +
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKD 121
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD GQ +
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKD 123
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD GQ +
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKD 122
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 22 LSLIGLQNAGKTSLVNVVA--TGGYSEDMIPTVGFNMRKVTKGNVTIKLWDL-----GGQ 74
+ ++G N+GKTSL N + T + T+ + N I L D G
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVPFIRGIP 241
Query: 75 PR-----FRSMWERYCRAVSAIVYVVDAADPDNLSI-SRSELHDLLNKPSLSGIPLLVLG 128
P+ F ++ E + A++ V+D+ +NL I + ++L + +SG P+LV
Sbjct: 242 PQIVDAFFVTLSE--AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL 299
Query: 129 NKIDK 133
NKIDK
Sbjct: 300 NKIDK 304
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD GQ +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKD 121
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD GQ +
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKD 122
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD GQ +
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKD 120
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 6/150 (4%)
Query: 32 KTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSMWERYCRAV 88
K++L + D PT+ + K+ + + + D GQ F +M E+Y RA
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL 148
+ V D + + +L P++++GNK D +Q E
Sbjct: 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES--QRQVPRSEASA 139
Query: 149 KSITDREVCCFMISCKNSTNIDSVIDWLVK 178
+ V F S K N+D + LV+
Sbjct: 140 FGAS-HHVAYFEASAKLRLNVDEAFEQLVR 168
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ +M ++Y R + V + + + +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 14/104 (13%)
Query: 39 VATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98
V T G E VG N K +L+D+GGQ R W V+A+++ +
Sbjct: 162 VRTTGVVEIQFSPVGEN----KKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217
Query: 99 DPD---------NLSISRSELHD-LLNKPSLSGIPLLVLGNKID 132
+ D N + EL D +L +P ++ NK D
Sbjct: 218 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD GQ +
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 70
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 71 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKD 124
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD GQ +
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKD 140
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 33.1 bits (74), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD GQ +
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKD 122
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD GQ +
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFXPNVPIILVGNKKD 140
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 11 LRSLFFK-QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTI 66
+ +L+F+ Q ++ ++G GKT L+ T + + IPTV N V V +
Sbjct: 21 MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL 80
Query: 67 KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLV 126
LWD GQ + + + P + R++ + + P+++
Sbjct: 81 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIIL 139
Query: 127 LGNKID 132
+G K+D
Sbjct: 140 VGTKLD 145
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD GQ +
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKD 118
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 16/182 (8%)
Query: 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTI 66
+ +S+ E++L++ G GK++LV T + + PT+ R + V++
Sbjct: 19 YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSM 78
Query: 67 KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLS--ISRSELHDLLNKPSLSGIPL 124
++ D GQ E + R V V D D + + + D + KP + L
Sbjct: 79 EILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP--KNVTL 135
Query: 125 LVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST---NIDSVIDWLVKHSK 181
+++GNK D S+Q T+E G K T E+ C C T NI + L + +
Sbjct: 136 ILVGNKADLDH--SRQVSTEE-GEKLAT--ELACAFYECSACTGEGNITEIFYELCREVR 190
Query: 182 SK 183
+
Sbjct: 191 RR 192
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD GQ +
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKD 120
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD GQ +
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKD 118
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 13 SLFFKQEM--ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIK 67
+L+F+ + +L ++G GKT L+ V + + E +PTV N +V V +
Sbjct: 17 NLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELA 76
Query: 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNL-SISRSELHDLLNKPSLSGIPLLV 126
LWD GQ + + I+ PD+L +I + ++ K +P+++
Sbjct: 77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV--KHFCPNVPIIL 134
Query: 127 LGNKID 132
+ NK D
Sbjct: 135 VANKKD 140
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD GQ +
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKD 120
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 153 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 205
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 148 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 200
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 149 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 201
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 150 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 202
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 150 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 202
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 152 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 204
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 155 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 207
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 9/140 (6%)
Query: 44 YSEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP 100
+ +D PT+ + K T+ + + + D GQ F +M E+Y R + V D
Sbjct: 43 FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK 102
Query: 101 DNLSISRSELHDL-LNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCF 159
+ H L L P++++ NK+D + + +T + G + T +
Sbjct: 103 ASFE-HVDRFHQLILRVKDRESFPMILVANKVD---LMHLRKVTRDQGKEMATKYNIPYI 158
Query: 160 MISCKNST-NIDSVIDWLVK 178
S K+ N+D LV+
Sbjct: 159 ETSAKDPPLNVDKTFHDLVR 178
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 147 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 199
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 179 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 231
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 154 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 206
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 153 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 205
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 148 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 200
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 155 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 207
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD GQ +
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKD 120
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 230
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 148 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 200
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 230
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 155 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 207
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 185 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 237
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD GQ +
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKD 120
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 181 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 233
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GGQ R W V+AI++ V +D D
Sbjct: 178 VKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 230
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDL-LNKPSLSGIPL 124
+ + D GQ F +M E+Y R + V D + H L L P+
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFE-HVDRFHQLILRVKDRESFPM 126
Query: 125 LVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST-NIDSVIDWLVK 178
+++ NK+D + + +T + G + T + S K+ N+D LV+
Sbjct: 127 ILVANKVD---LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P+L++G K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPHTPILLVGTKLD 118
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 15/167 (8%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSE-DMIPTVGFNMRKVTKGNVTIKL-WDLGGQPR 76
E+ L ++G +GK+SL++ TG Y + + + + G + L + G P
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 66
Query: 77 FR-SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNK---PSLSGIPLLVLGNKID 132
+ S W A+++V D ++ + S LH L+ G+ L ++G + D
Sbjct: 67 AKFSGW------ADAVIFVFSLEDENSFQ-AVSRLHGQLSSLRGEGRGGLALALVGTQ-D 118
Query: 133 KPGALSKQALTDEMGLKSITDREVCCFMISCKN-STNIDSVIDWLVK 178
+ A S + + D D + C + +C N+D V + +
Sbjct: 119 RISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQ 165
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G + + ++ +++D+GGQ R W V+AI++ V +D D
Sbjct: 181 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 233
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G + + ++ +++D+GGQ R W V+AI++ V +D D
Sbjct: 150 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 202
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDL-LNKPSLSGIPL 124
+ + D GQ F +M E+Y R + V D + H L L P+
Sbjct: 63 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFE-HVDRFHQLILRVKDRESFPM 121
Query: 125 LVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST-NIDSVIDWLVK 178
+++ NK+D + + +T + G + T + S K+ N+D LV+
Sbjct: 122 ILVANKVD---LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 173
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 3 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P+L++G K+D
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPHTPILLVGTKLD 119
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 16/158 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRS 79
++G GKT L+ A + E+ +PTV F+ V+ + L+D GQ +
Sbjct: 23 VVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQEDYDR 81
Query: 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKI---DKPGA 136
+ + +P + + E L K +P L++G +I D P
Sbjct: 82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL-KEYAPNVPFLLIGTQIDLRDDPKT 140
Query: 137 LSK------QALTDEMGLKSITDREVCCFMISCKNSTN 168
L++ + + E G K + CC+ + C T
Sbjct: 141 LARLNDMKEKPICVEQGQKLAKEIGACCY-VECSALTQ 177
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 3 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P+L++G K+D
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPHTPILLVGTKLD 119
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 5/126 (3%)
Query: 11 LRSLFFK-QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTI 66
+ +L+F+ Q ++ ++G GKT L+ T + IPTV N V V +
Sbjct: 21 MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNL 80
Query: 67 KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLV 126
LWD GQ + + + P + R++ + + P+++
Sbjct: 81 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIIL 139
Query: 127 LGNKID 132
+G K+D
Sbjct: 140 VGTKLD 145
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDM------IPTVGFNMRKVTKGNVTIKLWDLGGQ 74
+L L+G +GK+S+ +++ + + D I ++R + GN+T+ LWD GGQ
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL--GNMTLNLWDCGGQ 65
Query: 75 PRFRSMW-----ERYCRAVSAIVYVVDAADPD 101
F + + + V +++V D +
Sbjct: 66 DVFMENYFTKQKDHIFQMVQVLIHVFDVESTE 97
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95
+ T G T N+ +L+D+GGQ R W V+AI++ V
Sbjct: 159 VKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCV 205
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 22/167 (13%)
Query: 22 LSLIGLQNAGKTSLVNVV----ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77
++++G + GKTSL+ + G + + +G + G +T D G F
Sbjct: 7 VTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMIT--FLDTPGHAAF 64
Query: 78 RSMWERYCRAVSAIVYVVDAAD---PDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134
SM R +A +V VV A D P + + + + +P++V NKIDKP
Sbjct: 65 TSMRARGAQATDIVVLVVAADDGVMPQTI--------EAIQHAKAAQVPVVVAVNKIDKP 116
Query: 135 GALSKQALTDEMGLKSITDR----EVCCFMISCKNSTNIDSVIDWLV 177
A + +E+ I E +S K T ID ++D ++
Sbjct: 117 EA-DPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAIL 162
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P++++G K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD 118
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P++++G K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD 118
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGG 73
K+ +++ ++G GKT L+ + G +PTV N V K + LWD G
Sbjct: 20 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 79
Query: 74 QPRFRSM 80
Q + +
Sbjct: 80 QEEYDRL 86
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK---GNVTIKLWDLGG 73
K+ +++ ++G GKT L+ + G +PTV N V K + LWD G
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 74 QPRFRSM 80
Q + +
Sbjct: 81 QEEYDRL 87
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P++++G K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD 118
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P++++G K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD 118
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P++++G K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD 118
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P++++G K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD 118
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 21 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 80
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P++++G K+D
Sbjct: 81 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD 137
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+ GQ R W V+AI++ V +D D
Sbjct: 179 VKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYD 231
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+G Q R W V+AI++ V +D D
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYD 230
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G + + ++ + +D+GGQ R W V+AI++ V +D D
Sbjct: 175 VKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 227
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
V+A+V+VVD P EL KP + +P+L++GNK+D
Sbjct: 87 VNAVVWVVDLRHPPT---PEDELVARALKPLVGKVPILLVGNKLD 128
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+ GQ R W V+AI++ V +D D
Sbjct: 179 VKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYD 231
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 8 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 75 PRF 77
+
Sbjct: 68 EDY 70
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 5/126 (3%)
Query: 11 LRSLFFK-QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTI 66
+ +L+F+ Q ++ ++G GKT L+ T + + IPTV N V V +
Sbjct: 21 MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL 80
Query: 67 KLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLV 126
LWD G + + + P + R++ + + P+++
Sbjct: 81 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIIL 139
Query: 127 LGNKID 132
+G K+D
Sbjct: 140 VGTKLD 145
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P++++G K+D
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD 118
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P++++G K+D
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD 120
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P++++G K+D
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD 118
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 9 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 68
Query: 75 PRF 77
+
Sbjct: 69 EDY 71
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 6 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 65
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P++++G K+D
Sbjct: 66 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD 122
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRF 77
+L ++G GKT L+ V + + E +PTV N +V V + LWD G +
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ I+ PD+L + E K +P++++GNK D
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSLE-NIPEKWTPEVKHFCPNVPIILVGNKKD 123
>pdb|3R7W|A Chain A, Crystal Structure Of Gtr1p-Gtr2p Complex
pdb|3R7W|C Chain C, Crystal Structure Of Gtr1p-Gtr2p Complex
Length = 307
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 62 GNVTIKLWDLGGQPRFRSMW-----ERYCRAVSAIVYVVDAADPD 101
GN T+ LWD GGQ F + + + V +++V D +
Sbjct: 50 GNXTLNLWDCGGQDVFXENYFTKQKDHIFQXVQVLIHVFDVESTE 94
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 13 SLFFK--QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IK 67
+L+F+ E +L ++G GK++L + + ++ PT+ + RK V G +
Sbjct: 13 NLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLD 72
Query: 68 LWDLGGQPRFRSMWERYCRAVSAIVYVV---DAADPDNLSISRSELHDLLNKPSLSGIPL 124
+ D GQ + +M ++Y R + V ++ ++++ R ++ + + +P+
Sbjct: 73 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS---DDVPM 129
Query: 125 LVLGNKIDKP 134
+++GNK D P
Sbjct: 130 VLVGNKCDLP 139
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNK-----PSLSGI 122
L+ + GQ + + + R V IV+V D+A P+ L + + ++ +L +
Sbjct: 78 LYTVPGQVFYNASRKLILRGVDGIVFVADSA-PNRLRANAESMRNMRENLAEYGLTLDDV 136
Query: 123 PLLVLGNKIDKPGAL 137
P+++ NK D P AL
Sbjct: 137 PIVIQVNKRDLPDAL 151
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101
+ T G T ++ K++D+GG R W V+AI++ V +D D
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYD 230
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD GQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA---ADPDNLSISRSELHDLLNKPSLSGI 122
+ + D G F ER R + V V+DA +P ++ R + + G+
Sbjct: 77 VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR--------QATTYGV 128
Query: 123 PLLVLGNKIDKPGA 136
P +V NK+DK GA
Sbjct: 129 PRIVFVNKMDKLGA 142
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 28.9 bits (63), Expect = 1.7, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA---ADPDNLSISRSELHDLLNKPSLSGI 122
+ + D G F ER R + V V+DA +P ++ R + + G+
Sbjct: 77 VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR--------QATTYGV 128
Query: 123 PLLVLGNKIDKPGA 136
P +V NK+DK GA
Sbjct: 129 PRIVFVNKMDKLGA 142
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + D GGQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ +M ++Y R + V + + + +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQPRFR- 78
E++LIG N+GKTSL N++ P V + + K N +++ DL G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 79 -SMWERYCR------AVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNK 130
S E+ R +I+ VVDA + + NL ++ + +GIP+ + N
Sbjct: 65 YSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIE--------TGIPVTIALNM 116
Query: 131 ID 132
ID
Sbjct: 117 ID 118
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
Length = 592
Score = 28.1 bits (61), Expect = 2.6, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 100 PDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREV 156
P L ++R+ +KP G+PL L ++ KP Q L D + L + V
Sbjct: 20 PVRLKVARAPK----DKPGDYGVPLFALAKELRKPPQAIAQELKDRLPLPEFVEEAV 72
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 4 EYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+ +M ++Y R + V + + + +P++++GNK D P
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 136 AL--SKQA 141
+KQA
Sbjct: 124 RTVDTKQA 131
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 4 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135
+ +M ++Y R + V + + + +P++++GNK D P
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 136 AL--SKQA 141
+KQA
Sbjct: 124 RTVDTKQA 131
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 13 SLFFK--QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IK 67
+L+F+ E +L ++G GK++L + + ++ PT+ + RK V G +
Sbjct: 13 NLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLD 72
Query: 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVL 127
+ D G + +M ++Y R + V + + + +P++++
Sbjct: 73 ILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLV 132
Query: 128 GNKIDKPGAL--SKQA 141
GNK D P +KQA
Sbjct: 133 GNKCDLPSRTVDTKQA 148
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQPRFR- 78
E++LIG N+GKTSL N++ P V + + K N +++ DL G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 79 -SMWERYCR------AVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNK 130
S E+ R +I+ VVDA + + NL ++ + +GIP+ + N
Sbjct: 65 YSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIE--------TGIPVTIALNM 116
Query: 131 ID 132
ID
Sbjct: 117 ID 118
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 17/120 (14%)
Query: 27 LQNAGKTSLVNVVATGGYSEDMI----PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82
+N + + + V T ED+I T G + ++ L D+GGQ R W
Sbjct: 123 FENVKRIAXEDYVPT---EEDLIHNRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWV 179
Query: 83 RYCRAVSAIVYVVDAADPD----------NLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ V ++V A+ D L+ S + D+ L G L+ NK D
Sbjct: 180 SFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFKDIXTNEFLKGAVKLIFLNKXD 239
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 51 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95
T G K V ++D+GGQ R W + V+AI++VV
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 248
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 51 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95
T G K V ++D+GGQ R W + V+AI++VV
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 248
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 51 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95
T G K V ++D+GGQ R W + V+AI++VV
Sbjct: 190 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 234
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 51 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95
T G K V ++D+GGQ R W + V+AI++VV
Sbjct: 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 248
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 51 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95
T G K V ++D+GGQ R W + V+AI++VV
Sbjct: 190 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVV 234
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD G
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P++++G K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD 118
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQPRFR- 78
E++LIG N+GKTSL N++ P V + + K N +++ DL G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 79 -SMWERYCR------AVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNK 130
S E+ R +I+ VVDA + + NL ++ + +GIP+ + N
Sbjct: 65 YSPAEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIE--------TGIPVTIALNM 116
Query: 131 ID 132
ID
Sbjct: 117 ID 118
>pdb|4ARZ|B Chain B, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 341
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 19/88 (21%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN-------VTIKLWDLGGQ-- 74
L+G++ GK+S+ VV +M P + + + + + + +L GQ
Sbjct: 14 LMGVRRCGKSSICKVVF-----HNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLN 68
Query: 75 ---PRFRSMWERYCRAVSAIVYVVDAAD 99
P + S ER ++V A+VYV+D+ D
Sbjct: 69 YFEPSYDS--ERLFKSVGALVYVIDSQD 94
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD G
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P++++G K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD 118
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 2 GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVN 37
+ E F N + + ++ ++ LIG N GK+SLVN
Sbjct: 178 AVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVN 213
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGG 73
F +++ ++GL N GK++ NV+ S + P T+ N +V V + +D
Sbjct: 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVP---VPDERFD--- 72
Query: 74 QPRFRSMWERYCRAVSAIVYVVDAA 98
F + + + A + VVD A
Sbjct: 73 ---FLCQYHKPASKIPAFLNVVDIA 94
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ +M ++Y R + V + + + +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQPRFR- 78
E++LIG N+GKTSL N++ P V + + K N +++ DL G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 79 -SMWERYCR------AVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNK 130
S E+ R +I+ VVDA + + NL ++ + +GIP+ + N
Sbjct: 65 YSPEEKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIE--------TGIPVTIALNM 116
Query: 131 ID 132
ID
Sbjct: 117 ID 118
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Query: 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQ 74
Q ++ ++G GKT L+ T + + IPTV N V V + LWD G
Sbjct: 5 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL 64
Query: 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ + + P + R++ + + P++++G K+D
Sbjct: 65 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLD 121
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSIS----RSELHDLLNKP-SLSGI 122
L+ + GQ + + + R V IV+V D+A P+ L + R+ +L +L +
Sbjct: 78 LYTVPGQVFYNASRKLILRGVDGIVFVADSA-PNRLRANAESXRNXRENLAEYGLTLDDV 136
Query: 123 PLLVLGNKIDKPGALSKQ---ALTDEMG 147
P+++ NK D P AL + A+ D G
Sbjct: 137 PIVIQVNKRDLPDALPVEXVRAVVDPEG 164
>pdb|2GED|A Chain A, Signal Recognition Particle Receptor Beta-subunit In
Nucleotide-free Dimerized Form
pdb|2GED|B Chain B, Signal Recognition Particle Receptor Beta-subunit In
Nucleotide-free Dimerized Form
Length = 193
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWER 83
+ G QN+GKTSL+ ++ T ++ + VT L D G + R
Sbjct: 53 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVT--LVDFPGHVKLRYKLSD 110
Query: 84 YCRA----VSAIVYVVDAA-DPDNLSISRSELHDLLNKPSLS---GIPLLVLGNKID--- 132
Y + V ++++VD+ DP L+ + L D+L+ S GI +L+ NK +
Sbjct: 111 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170
Query: 133 -KPGALSKQALTDEM 146
+P + K AL E+
Sbjct: 171 ARPPSKIKDALESEI 185
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGG------ 73
E++LIG N+GKTSL N++ P V + + K N +++ DL G
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSP 64
Query: 74 -QPRFRSMWER-YCRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNK 130
P + + + +I+ VVDA + + NL ++ + +GIP+ + N
Sbjct: 65 YSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIE--------TGIPVTIALNM 116
Query: 131 ID 132
ID
Sbjct: 117 ID 118
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ +M ++Y R + V + + + +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ +M ++Y R + V + + + +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + E PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ +M ++Y R + V + + + +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 17/168 (10%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSE-DMIPTVGFNMRKVTKGNVTIKL-WDLGGQPR 76
E+ L ++G +GK+SL++ TG Y + + + + G + L + G P
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 66
Query: 77 FR-SMWERYCRAVSAIVYVVDAADPDNL-SISRSELHDLLNK---PSLSGIPLLVLGNKI 131
+ S W A+++V D ++ ++SR LH L+ G+ L ++G +
Sbjct: 67 AKFSGW------ADAVIFVFSLEDENSFQAVSR--LHGQLSSLRGEGRGGLALALVGTQ- 117
Query: 132 DKPGALSKQALTDEMGLKSITDREVCCFM-ISCKNSTNIDSVIDWLVK 178
D+ A S + + D D + C + N+D V + +
Sbjct: 118 DRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQ 165
>pdb|1NRJ|B Chain B, Signal Recognition Particle Receptor Beta-Subunit In
Complex With The Srx Domain From The Alpha-Subunit
Length = 218
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWER 83
+ G QN+GKTSL+ ++ T ++ + VT L D G + R
Sbjct: 17 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVT--LVDFPGHVKLRYKLSD 74
Query: 84 YCRA----VSAIVYVVDAA-DPDNLSISRSELHDLLNKPSLS---GIPLLVLGNKID--- 132
Y + V ++++VD+ DP L+ + L D+L+ S GI +L+ NK +
Sbjct: 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 134
Query: 133 -KPGALSKQALTDEM 146
+P + K AL E+
Sbjct: 135 ARPPSKIKDALESEI 149
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/63 (19%), Positives = 30/63 (47%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRS 108
+ T G + + ++ +++D+GGQ R W V+ I+++ + D + +
Sbjct: 149 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDD 208
Query: 109 ELH 111
E++
Sbjct: 209 EVN 211
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNL 103
+PT G +V ++ D+GGQ R W V++I+++V ++ D +
Sbjct: 180 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQV 234
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSIS 106
+PT G +V ++ D+GGQ R W V++I+++V ++ D + +
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 209
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNL 103
+PT G +V ++ D+GGQ R W V++I+++V ++ D +
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQV 232
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSIS 106
+PT G +V ++ D+GGQ R W V++I+++V ++ D + +
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 235
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ +M ++Y R + V + + + +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ +M ++Y R + V + + + +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSIS 106
+PT G +V ++ D+GGQ R W V++I+++V ++ D + +
Sbjct: 172 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE 229
>pdb|3RMT|A Chain A, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|B Chain B, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|C Chain C, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
pdb|3RMT|D Chain D, Crystal Structure Of Putative
5-Enolpyruvoylshikimate-3-Phosphate Synthase From
Bacillus Halodurans C-125
Length = 455
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK 58
L GL+ GKTS+ T ++E M+ G N+ K
Sbjct: 179 LAGLRAEGKTSVTEPAKTRDHTERMLEAFGVNIEK 213
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ +M ++Y R + V + + + +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ +M ++Y R + V + + + +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ +M ++Y R + V + + + +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|3R7W|B Chain B, Crystal Structure Of Gtr1p-Gtr2p Complex
pdb|3R7W|D Chain D, Crystal Structure Of Gtr1p-Gtr2p Complex
Length = 331
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKL--WDLGGQ-----PR 76
L G++ GK+S+ VV D + + + + I L +L GQ P
Sbjct: 4 LXGVRRCGKSSICKVVFHNXQPLDTLYLESTSNPSLEHFSTLIDLAVXELPGQLNYFEPS 63
Query: 77 FRSMWERYCRAVSAIVYVVDAAD 99
+ S ER ++V A+VYV+D+ D
Sbjct: 64 YDS--ERLFKSVGALVYVIDSQD 84
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVT-IKLWDLGGQP 75
E +L ++G GK++L + + ++ PT+ + RK V G + + D GQ
Sbjct: 3 EYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132
+ +M ++Y R + V + + + +P++++GNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,333,947
Number of Sequences: 62578
Number of extensions: 198628
Number of successful extensions: 1135
Number of sequences better than 100.0: 378
Number of HSP's better than 100.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 737
Number of HSP's gapped (non-prelim): 382
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)