Query 030008
Match_columns 184
No_of_seqs 137 out of 1141
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 07:05:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00133 ADP-ribosylation fact 100.0 1E-34 2.3E-39 201.8 21.4 179 1-183 1-180 (182)
2 PLN00223 ADP-ribosylation fact 100.0 1.5E-34 3.1E-39 200.9 21.6 169 14-183 12-180 (181)
3 cd04149 Arf6 Arf6 subfamily. 100.0 3.6E-34 7.9E-39 196.8 18.7 163 15-178 5-167 (168)
4 smart00177 ARF ARF-like small 100.0 1.3E-33 2.8E-38 195.3 20.6 164 17-181 11-174 (175)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.5E-34 3.3E-39 193.9 14.8 163 18-183 21-187 (221)
6 KOG0075 GTP-binding ADP-ribosy 100.0 2E-34 4.4E-39 184.8 14.4 182 1-182 2-183 (186)
7 cd04150 Arf1_5_like Arf1-Arf5- 100.0 4.5E-33 9.7E-38 189.8 19.1 158 20-178 1-158 (159)
8 KOG0084 GTPase Rab1/YPT1, smal 100.0 4E-34 8.6E-39 192.4 12.8 162 17-183 7-174 (205)
9 KOG0092 GTPase Rab5/YPT51 and 100.0 5.3E-34 1.1E-38 191.1 12.0 163 17-183 3-169 (200)
10 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 4E-32 8.6E-37 187.7 20.4 161 17-178 13-173 (174)
11 smart00178 SAR Sar1p-like memb 100.0 1E-31 2.2E-36 187.2 20.8 175 2-179 2-183 (184)
12 cd04154 Arl2 Arl2 subfamily. 100.0 7.5E-32 1.6E-36 186.2 19.2 161 17-178 12-172 (173)
13 cd04158 ARD1 ARD1 subfamily. 100.0 9.4E-32 2E-36 185.0 19.5 161 21-182 1-162 (169)
14 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.8E-32 3.9E-37 189.1 14.3 160 19-182 2-165 (172)
15 cd04157 Arl6 Arl6 subfamily. 100.0 1.8E-31 3.9E-36 182.2 19.0 158 21-178 1-161 (162)
16 cd04120 Rab12 Rab12 subfamily. 100.0 4.8E-32 1.1E-36 190.6 16.0 159 20-182 1-164 (202)
17 cd04151 Arl1 Arl1 subfamily. 100.0 3E-31 6.5E-36 180.6 18.7 157 21-178 1-157 (158)
18 PF00025 Arf: ADP-ribosylation 100.0 2.1E-31 4.5E-36 184.1 17.9 171 9-180 3-175 (175)
19 cd04121 Rab40 Rab40 subfamily. 100.0 4.9E-32 1.1E-36 188.9 14.8 159 17-182 4-168 (189)
20 cd00879 Sar1 Sar1 subfamily. 100.0 1.2E-30 2.5E-35 182.8 21.7 175 3-180 5-190 (190)
21 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.9E-32 1.1E-36 188.0 13.7 164 17-182 3-181 (182)
22 cd04127 Rab27A Rab27a subfamil 100.0 1.5E-31 3.2E-36 185.8 15.5 161 18-183 3-179 (180)
23 cd04175 Rap1 Rap1 subgroup. T 100.0 9E-32 2E-36 184.2 14.0 158 19-181 1-163 (164)
24 KOG0080 GTPase Rab18, small G 100.0 2.3E-32 5E-37 177.9 10.3 162 18-182 10-175 (209)
25 KOG0078 GTP-binding protein SE 100.0 8.6E-32 1.9E-36 183.5 13.5 163 17-183 10-176 (207)
26 cd04136 Rap_like Rap-like subf 100.0 1.2E-31 2.5E-36 183.3 14.2 158 19-180 1-162 (163)
27 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 6.9E-31 1.5E-35 179.8 17.9 156 21-178 1-163 (164)
28 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.3E-30 2.8E-35 177.4 19.0 157 21-178 1-157 (158)
29 cd04122 Rab14 Rab14 subfamily. 100.0 1.9E-31 4.1E-36 183.0 14.9 158 19-182 2-165 (166)
30 cd04133 Rop_like Rop subfamily 100.0 2.2E-31 4.8E-36 183.7 15.2 161 20-182 2-174 (176)
31 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.3E-30 2.8E-35 181.5 19.1 164 18-182 2-171 (183)
32 PTZ00369 Ras-like protein; Pro 100.0 1.4E-31 3E-36 187.4 14.3 161 17-182 3-168 (189)
33 cd01875 RhoG RhoG subfamily. 100.0 6.1E-31 1.3E-35 184.3 16.9 163 18-182 2-178 (191)
34 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.2E-30 4.8E-35 177.9 19.4 157 21-178 1-166 (167)
35 cd04138 H_N_K_Ras_like H-Ras/N 100.0 6.3E-31 1.4E-35 179.3 16.5 157 19-180 1-161 (162)
36 cd00877 Ran Ran (Ras-related n 100.0 9.1E-31 2E-35 179.6 17.1 156 20-182 1-160 (166)
37 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 4.5E-31 9.7E-36 181.8 15.3 158 21-182 2-166 (170)
38 cd01874 Cdc42 Cdc42 subfamily. 100.0 3E-31 6.5E-36 183.4 14.0 159 20-180 2-174 (175)
39 smart00173 RAS Ras subfamily o 100.0 3.9E-31 8.4E-36 181.0 14.4 158 20-182 1-163 (164)
40 cd04131 Rnd Rnd subfamily. Th 100.0 7.6E-31 1.6E-35 181.7 15.8 161 19-181 1-176 (178)
41 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.4E-30 5.3E-35 182.7 18.6 159 20-182 1-169 (201)
42 cd04145 M_R_Ras_like M-Ras/R-R 100.0 4.4E-31 9.5E-36 180.7 14.3 159 18-180 1-163 (164)
43 cd04119 RJL RJL (RabJ-Like) su 100.0 4.9E-31 1.1E-35 180.9 14.5 157 20-181 1-167 (168)
44 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.9E-30 6.3E-35 177.2 18.2 158 21-178 1-166 (167)
45 cd01865 Rab3 Rab3 subfamily. 100.0 8.7E-31 1.9E-35 179.6 15.5 158 20-183 2-165 (165)
46 KOG0394 Ras-related GTPase [Ge 100.0 7.3E-32 1.6E-36 179.4 9.7 159 17-182 7-179 (210)
47 cd04126 Rab20 Rab20 subfamily. 100.0 6.8E-31 1.5E-35 186.8 15.4 160 20-181 1-190 (220)
48 cd01867 Rab8_Rab10_Rab13_like 100.0 7.1E-31 1.5E-35 180.3 14.8 160 18-183 2-167 (167)
49 cd04176 Rap2 Rap2 subgroup. T 100.0 4.2E-31 9E-36 180.7 13.6 158 19-180 1-162 (163)
50 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.8E-30 3.9E-35 180.5 16.6 160 20-182 1-167 (182)
51 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 6.1E-31 1.3E-35 188.0 14.5 163 18-182 12-189 (232)
52 PLN03071 GTP-binding nuclear p 100.0 1.5E-30 3.3E-35 185.7 16.4 158 17-182 11-173 (219)
53 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.1E-30 2.3E-35 179.2 15.0 158 19-182 2-165 (166)
54 cd04159 Arl10_like Arl10-like 100.0 1E-29 2.2E-34 172.6 19.4 157 22-178 2-158 (159)
55 cd04144 Ras2 Ras2 subfamily. 100.0 6.1E-31 1.3E-35 184.2 13.5 158 21-183 1-165 (190)
56 cd04117 Rab15 Rab15 subfamily. 100.0 1.1E-30 2.3E-35 178.4 14.3 155 20-179 1-160 (161)
57 cd04156 ARLTS1 ARLTS1 subfamil 100.0 7.2E-30 1.6E-34 174.0 18.3 157 21-178 1-159 (160)
58 cd04111 Rab39 Rab39 subfamily. 100.0 1.2E-30 2.6E-35 185.3 14.7 160 19-182 2-167 (211)
59 KOG0073 GTP-binding ADP-ribosy 100.0 1.5E-29 3.3E-34 165.3 18.5 165 17-182 14-179 (185)
60 KOG0070 GTP-binding ADP-ribosy 100.0 2.4E-30 5.2E-35 173.0 14.6 169 14-183 12-180 (181)
61 cd04140 ARHI_like ARHI subfami 100.0 1.4E-30 3.1E-35 178.5 13.6 156 20-179 2-163 (165)
62 cd04155 Arl3 Arl3 subfamily. 100.0 3E-29 6.6E-34 173.1 20.2 161 17-178 12-172 (173)
63 cd04109 Rab28 Rab28 subfamily. 100.0 3.3E-30 7.2E-35 183.7 15.8 159 20-182 1-167 (215)
64 cd01864 Rab19 Rab19 subfamily. 100.0 1.8E-29 3.8E-34 173.1 18.7 158 18-180 2-165 (165)
65 cd04124 RabL2 RabL2 subfamily. 100.0 4.9E-30 1.1E-34 175.2 15.6 157 20-184 1-161 (161)
66 cd01871 Rac1_like Rac1-like su 100.0 4.5E-30 9.8E-35 177.4 15.4 159 19-179 1-173 (174)
67 cd01866 Rab2 Rab2 subfamily. 100.0 4.4E-30 9.6E-35 176.5 15.0 159 18-182 3-167 (168)
68 KOG0098 GTPase Rab2, small G p 100.0 9.3E-31 2E-35 174.5 11.1 160 17-180 4-167 (216)
69 cd04116 Rab9 Rab9 subfamily. 100.0 1.3E-29 2.8E-34 174.5 17.2 159 17-179 3-169 (170)
70 cd04103 Centaurin_gamma Centau 100.0 6.2E-30 1.3E-34 174.0 14.5 152 20-179 1-157 (158)
71 cd04106 Rab23_lke Rab23-like s 100.0 5.9E-30 1.3E-34 174.8 14.5 153 20-179 1-161 (162)
72 cd04110 Rab35 Rab35 subfamily. 100.0 7.7E-30 1.7E-34 179.8 15.3 159 17-182 4-168 (199)
73 cd04115 Rab33B_Rab33A Rab33B/R 100.0 6.7E-30 1.4E-34 176.0 14.6 159 19-181 2-169 (170)
74 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.3E-29 2.8E-34 180.3 16.4 163 19-182 1-177 (222)
75 cd01868 Rab11_like Rab11-like. 100.0 8.2E-30 1.8E-34 174.6 14.7 156 19-180 3-164 (165)
76 cd04112 Rab26 Rab26 subfamily. 100.0 9.6E-30 2.1E-34 178.3 14.3 158 20-183 1-165 (191)
77 cd04113 Rab4 Rab4 subfamily. 100.0 1E-29 2.3E-34 173.5 14.0 155 20-180 1-161 (161)
78 cd04134 Rho3 Rho3 subfamily. 100.0 4.4E-30 9.6E-35 179.7 12.3 161 20-182 1-175 (189)
79 smart00175 RAB Rab subfamily o 100.0 2.7E-29 5.9E-34 171.7 15.6 158 20-183 1-164 (164)
80 KOG0095 GTPase Rab30, small G 100.0 5.7E-30 1.2E-34 165.0 11.1 160 18-181 6-169 (213)
81 cd01861 Rab6 Rab6 subfamily. 100.0 2.2E-29 4.8E-34 171.7 14.7 156 20-180 1-161 (161)
82 cd04125 RabA_like RabA-like su 100.0 2E-29 4.4E-34 176.3 14.6 158 20-182 1-163 (188)
83 cd04132 Rho4_like Rho4-like su 100.0 5.7E-29 1.2E-33 173.8 16.7 156 20-182 1-168 (187)
84 cd01863 Rab18 Rab18 subfamily. 100.0 6.6E-29 1.4E-33 169.5 16.5 156 20-180 1-161 (161)
85 cd01860 Rab5_related Rab5-rela 100.0 2.9E-29 6.4E-34 171.5 14.7 156 19-180 1-162 (163)
86 cd04177 RSR1 RSR1 subgroup. R 100.0 1.8E-29 3.9E-34 173.5 13.7 158 19-180 1-163 (168)
87 KOG0093 GTPase Rab3, small G p 100.0 6.7E-30 1.5E-34 164.1 10.5 164 16-183 18-185 (193)
88 cd04139 RalA_RalB RalA/RalB su 100.0 3.1E-29 6.7E-34 171.4 14.6 159 20-183 1-164 (164)
89 cd04101 RabL4 RabL4 (Rab-like4 100.0 4.6E-29 1E-33 170.7 15.3 155 20-180 1-163 (164)
90 PLN03110 Rab GTPase; Provision 100.0 3E-29 6.6E-34 178.8 14.9 160 18-182 11-175 (216)
91 smart00176 RAN Ran (Ras-relate 100.0 7.2E-29 1.6E-33 174.3 16.5 151 25-182 1-155 (200)
92 cd04143 Rhes_like Rhes_like su 100.0 1.3E-28 2.8E-33 178.2 18.3 157 20-180 1-170 (247)
93 cd01892 Miro2 Miro2 subfamily. 100.0 2.2E-28 4.9E-33 168.2 18.2 156 17-182 2-167 (169)
94 cd01862 Rab7 Rab7 subfamily. 100.0 2.1E-28 4.6E-33 168.6 17.8 160 20-183 1-169 (172)
95 cd01893 Miro1 Miro1 subfamily. 100.0 9.7E-29 2.1E-33 169.6 15.7 162 20-182 1-165 (166)
96 PF00071 Ras: Ras family; Int 100.0 1.5E-29 3.3E-34 172.8 11.5 155 21-181 1-161 (162)
97 smart00174 RHO Rho (Ras homolo 100.0 2.6E-29 5.6E-34 173.6 12.7 159 22-182 1-173 (174)
98 cd04142 RRP22 RRP22 subfamily. 100.0 4.9E-29 1.1E-33 175.3 14.2 160 20-182 1-175 (198)
99 cd04135 Tc10 TC10 subfamily. 100.0 2.3E-29 5E-34 173.8 12.2 160 20-180 1-173 (174)
100 cd04118 Rab24 Rab24 subfamily. 100.0 6.2E-29 1.4E-33 174.5 14.5 161 20-182 1-167 (193)
101 cd04146 RERG_RasL11_like RERG/ 100.0 4.1E-29 8.9E-34 171.2 12.3 156 21-181 1-164 (165)
102 KOG0086 GTPase Rab4, small G p 100.0 9.3E-29 2E-33 160.0 12.8 162 17-182 7-172 (214)
103 KOG0071 GTP-binding ADP-ribosy 100.0 8.2E-28 1.8E-32 153.3 16.7 172 11-183 9-180 (180)
104 KOG0087 GTPase Rab11/YPT3, sma 100.0 3.8E-29 8.2E-34 170.1 11.3 163 16-182 11-177 (222)
105 PLN03118 Rab family protein; P 100.0 2E-28 4.4E-33 174.1 15.2 160 17-182 12-178 (211)
106 PLN03108 Rab family protein; P 100.0 1.7E-28 3.7E-33 174.2 14.7 159 18-182 5-169 (210)
107 cd04123 Rab21 Rab21 subfamily. 100.0 2E-28 4.4E-33 166.9 14.2 155 20-180 1-161 (162)
108 KOG0079 GTP-binding protein H- 100.0 1.8E-29 4E-34 162.3 8.3 153 20-182 9-170 (198)
109 cd04147 Ras_dva Ras-dva subfam 100.0 3.9E-28 8.5E-33 171.0 15.8 157 21-181 1-163 (198)
110 cd04130 Wrch_1 Wrch-1 subfamil 100.0 7.8E-29 1.7E-33 171.1 11.8 157 20-178 1-171 (173)
111 cd04148 RGK RGK subfamily. Th 100.0 2.4E-28 5.3E-33 174.6 14.5 156 20-181 1-163 (221)
112 cd00154 Rab Rab family. Rab G 100.0 2E-27 4.3E-32 161.1 17.4 152 20-177 1-158 (159)
113 cd04114 Rab30 Rab30 subfamily. 100.0 1.1E-27 2.3E-32 164.7 16.0 159 17-180 5-168 (169)
114 cd01873 RhoBTB RhoBTB subfamil 100.0 1.5E-28 3.3E-33 172.2 11.4 157 19-179 2-194 (195)
115 cd01870 RhoA_like RhoA-like su 100.0 8.5E-28 1.8E-32 166.1 14.9 159 20-180 2-174 (175)
116 cd04137 RheB Rheb (Ras Homolog 100.0 5.8E-28 1.3E-32 167.7 14.1 158 20-182 2-164 (180)
117 cd00157 Rho Rho (Ras homology) 100.0 2.8E-28 6.1E-33 167.8 11.9 158 20-178 1-170 (171)
118 cd00876 Ras Ras family. The R 100.0 3.9E-27 8.6E-32 160.2 16.7 155 21-180 1-160 (160)
119 KOG0091 GTPase Rab39, small G 100.0 6.6E-28 1.4E-32 157.6 10.0 163 17-182 6-174 (213)
120 cd01898 Obg Obg subfamily. Th 99.9 3E-26 6.5E-31 157.6 16.6 157 21-180 2-170 (170)
121 KOG0081 GTPase Rab27, small G 99.9 8.3E-29 1.8E-33 161.2 3.2 160 20-182 10-182 (219)
122 PTZ00132 GTP-binding nuclear p 99.9 5.5E-26 1.2E-30 162.0 17.9 159 17-182 7-169 (215)
123 cd01897 NOG NOG1 is a nucleola 99.9 4.4E-26 9.6E-31 156.5 16.6 154 20-180 1-167 (168)
124 cd04129 Rho2 Rho2 subfamily. 99.9 2.9E-26 6.2E-31 160.2 14.6 159 20-180 2-172 (187)
125 KOG0088 GTPase Rab21, small G 99.9 6.6E-28 1.4E-32 156.9 5.5 161 18-182 12-176 (218)
126 PRK12299 obgE GTPase CgtA; Rev 99.9 1.1E-25 2.5E-30 168.8 16.6 162 17-182 156-329 (335)
127 cd04171 SelB SelB subfamily. 99.9 1.6E-25 3.6E-30 152.9 15.8 153 20-178 1-163 (164)
128 cd04102 RabL3 RabL3 (Rab-like3 99.9 3.7E-25 7.9E-30 155.5 17.5 116 20-135 1-143 (202)
129 KOG0395 Ras-related GTPase [Ge 99.9 3.1E-26 6.7E-31 159.9 11.5 162 18-182 2-166 (196)
130 cd01878 HflX HflX subfamily. 99.9 4.1E-25 8.9E-30 156.4 17.4 154 17-180 39-204 (204)
131 KOG0076 GTP-binding ADP-ribosy 99.9 4.1E-26 9E-31 150.6 9.8 169 15-183 13-189 (197)
132 TIGR00436 era GTP-binding prot 99.9 6.7E-25 1.5E-29 161.3 17.2 153 21-182 2-165 (270)
133 cd01890 LepA LepA subfamily. 99.9 7.9E-25 1.7E-29 151.8 16.4 151 21-181 2-177 (179)
134 PRK03003 GTP-binding protein D 99.9 1.7E-24 3.8E-29 170.1 20.0 160 18-182 210-383 (472)
135 PRK15494 era GTPase Era; Provi 99.9 1.5E-24 3.2E-29 163.7 18.2 157 17-182 50-217 (339)
136 PF02421 FeoB_N: Ferrous iron 99.9 8.8E-26 1.9E-30 151.0 9.7 142 20-176 1-156 (156)
137 TIGR02729 Obg_CgtA Obg family 99.9 1.5E-24 3.3E-29 162.6 17.1 160 17-180 155-328 (329)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.6E-24 5.6E-29 147.6 16.7 155 21-181 2-166 (168)
139 cd00881 GTP_translation_factor 99.9 1.1E-24 2.4E-29 152.1 14.7 157 21-182 1-188 (189)
140 TIGR00231 small_GTP small GTP- 99.9 2.4E-24 5.2E-29 145.8 15.9 154 19-177 1-160 (161)
141 COG1159 Era GTPase [General fu 99.9 1.8E-24 3.9E-29 155.4 15.4 157 18-182 5-173 (298)
142 TIGR03156 GTP_HflX GTP-binding 99.9 4.3E-24 9.4E-29 161.4 17.4 151 18-179 188-350 (351)
143 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1E-23 2.2E-28 142.9 17.5 144 20-180 2-156 (157)
144 KOG0072 GTP-binding ADP-ribosy 99.9 4.4E-25 9.4E-30 141.5 10.0 178 3-183 4-181 (182)
145 PRK05291 trmE tRNA modificatio 99.9 5.7E-24 1.2E-28 165.8 18.2 147 17-181 213-370 (449)
146 PRK04213 GTP-binding protein; 99.9 8.1E-25 1.8E-29 154.5 12.0 160 18-183 8-194 (201)
147 cd01881 Obg_like The Obg-like 99.9 1.4E-24 3E-29 150.0 12.9 153 24-179 1-175 (176)
148 cd01889 SelB_euk SelB subfamil 99.9 4.1E-24 9E-29 149.9 15.0 157 20-181 1-186 (192)
149 PF00009 GTP_EFTU: Elongation 99.9 1.1E-24 2.3E-29 152.4 11.7 160 17-182 1-188 (188)
150 TIGR03594 GTPase_EngA ribosome 99.9 1.5E-23 3.2E-28 163.7 18.9 159 19-182 172-345 (429)
151 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3E-23 6.6E-28 161.0 20.2 155 12-182 196-361 (442)
152 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.1E-26 2.5E-31 147.1 0.8 156 24-183 2-162 (192)
153 cd01891 TypA_BipA TypA (tyrosi 99.9 2E-23 4.3E-28 146.7 17.1 157 20-181 3-192 (194)
154 TIGR02528 EutP ethanolamine ut 99.9 3E-24 6.6E-29 143.6 12.2 134 21-177 2-141 (142)
155 PRK12296 obgE GTPase CgtA; Rev 99.9 1E-23 2.3E-28 163.9 16.8 162 16-182 156-341 (500)
156 PRK03003 GTP-binding protein D 99.9 2.1E-23 4.5E-28 164.1 18.5 154 17-182 36-200 (472)
157 KOG0074 GTP-binding ADP-ribosy 99.9 4.2E-24 9.1E-29 136.7 11.8 176 4-181 3-179 (185)
158 cd01879 FeoB Ferrous iron tran 99.9 8.2E-24 1.8E-28 143.7 14.1 147 24-181 1-157 (158)
159 cd01895 EngA2 EngA2 subfamily. 99.9 5.9E-23 1.3E-27 141.3 18.2 156 19-179 2-173 (174)
160 cd00882 Ras_like_GTPase Ras-li 99.9 8.4E-24 1.8E-28 141.9 13.3 151 24-177 1-156 (157)
161 cd01894 EngA1 EngA1 subfamily. 99.9 2E-23 4.2E-28 141.6 15.2 146 23-180 1-157 (157)
162 PRK12297 obgE GTPase CgtA; Rev 99.9 4.9E-23 1.1E-27 158.3 18.7 156 19-182 158-328 (424)
163 cd01888 eIF2_gamma eIF2-gamma 99.9 2.2E-23 4.9E-28 147.2 13.9 160 20-182 1-200 (203)
164 COG1100 GTPase SAR1 and relate 99.9 8.1E-23 1.8E-27 146.1 16.1 165 18-182 4-186 (219)
165 PRK00454 engB GTP-binding prot 99.9 7.9E-23 1.7E-27 143.7 15.2 162 15-182 20-195 (196)
166 PRK12298 obgE GTPase CgtA; Rev 99.9 1.3E-22 2.8E-27 155.1 17.3 162 19-182 159-334 (390)
167 PLN00023 GTP-binding protein; 99.9 4.6E-23 1E-27 151.9 14.2 119 17-135 19-165 (334)
168 KOG0393 Ras-related small GTPa 99.9 3.1E-24 6.7E-29 147.1 7.4 162 18-181 3-179 (198)
169 PRK11058 GTPase HflX; Provisio 99.9 1.6E-22 3.5E-27 156.1 17.8 153 20-181 198-362 (426)
170 PRK09518 bifunctional cytidyla 99.9 1.8E-22 3.9E-27 165.4 18.8 159 19-182 450-622 (712)
171 KOG0097 GTPase Rab14, small G 99.9 3E-23 6.4E-28 133.0 11.0 158 17-180 9-172 (215)
172 PRK00089 era GTPase Era; Revie 99.9 2.3E-22 5.1E-27 149.6 17.2 157 18-182 4-172 (292)
173 COG1160 Predicted GTPases [Gen 99.9 1.1E-22 2.3E-27 153.8 15.1 149 20-180 4-164 (444)
174 PRK15467 ethanolamine utilizat 99.9 8.8E-23 1.9E-27 138.7 12.9 142 21-182 3-148 (158)
175 PRK00093 GTP-binding protein D 99.9 3.5E-22 7.6E-27 156.2 18.0 159 18-181 172-344 (435)
176 TIGR03594 GTPase_EngA ribosome 99.9 3.3E-22 7.2E-27 156.1 17.7 150 21-182 1-161 (429)
177 COG1160 Predicted GTPases [Gen 99.9 1.4E-22 3E-27 153.2 14.4 158 19-181 178-351 (444)
178 PRK00093 GTP-binding protein D 99.9 5.3E-22 1.1E-26 155.2 17.5 148 20-179 2-160 (435)
179 cd04163 Era Era subfamily. Er 99.9 7.6E-22 1.7E-26 134.7 16.3 154 19-180 3-168 (168)
180 cd04105 SR_beta Signal recogni 99.9 8.8E-22 1.9E-26 139.0 16.5 157 21-178 2-202 (203)
181 COG0486 ThdF Predicted GTPase 99.9 1.4E-21 3.1E-26 148.2 18.1 156 13-182 211-377 (454)
182 TIGR03598 GTPase_YsxC ribosome 99.9 3.9E-22 8.4E-27 138.4 13.8 148 14-170 13-179 (179)
183 PTZ00099 rab6; Provisional 99.9 1.5E-22 3.3E-27 139.7 11.1 136 42-183 3-144 (176)
184 cd00880 Era_like Era (E. coli 99.9 5.8E-22 1.3E-26 134.2 13.5 152 24-180 1-163 (163)
185 cd01884 EF_Tu EF-Tu subfamily. 99.9 3.9E-22 8.5E-27 139.6 12.9 157 18-179 1-191 (195)
186 TIGR00487 IF-2 translation ini 99.9 5.2E-22 1.1E-26 158.4 14.9 156 17-178 85-247 (587)
187 TIGR00475 selB selenocysteine- 99.9 3.3E-22 7.2E-27 160.0 13.5 158 20-182 1-167 (581)
188 COG0218 Predicted GTPase [Gene 99.9 1E-21 2.2E-26 134.3 13.7 166 10-183 15-199 (200)
189 PRK09518 bifunctional cytidyla 99.9 2.2E-21 4.8E-26 159.0 18.1 152 19-182 275-437 (712)
190 PRK05306 infB translation init 99.9 1.2E-21 2.6E-26 159.9 15.3 157 17-179 288-450 (787)
191 KOG4252 GTP-binding protein [S 99.9 7.9E-24 1.7E-28 140.7 2.0 159 18-183 19-183 (246)
192 TIGR01393 lepA GTP-binding pro 99.9 3.3E-21 7.2E-26 154.5 17.2 156 20-182 4-181 (595)
193 cd01896 DRG The developmentall 99.9 6.1E-21 1.3E-25 137.2 16.5 151 21-181 2-226 (233)
194 COG2229 Predicted GTPase [Gene 99.9 1.3E-20 2.7E-25 126.3 16.3 157 16-179 7-176 (187)
195 PRK12317 elongation factor 1-a 99.9 2E-21 4.3E-26 151.3 14.5 153 17-171 4-195 (425)
196 PF08477 Miro: Miro-like prote 99.9 3.4E-22 7.5E-27 129.7 8.4 110 21-132 1-119 (119)
197 CHL00189 infB translation init 99.9 2.5E-21 5.5E-26 156.8 15.1 158 17-180 242-409 (742)
198 cd04166 CysN_ATPS CysN_ATPS su 99.9 5.3E-21 1.2E-25 135.6 13.6 147 21-171 1-184 (208)
199 TIGR00483 EF-1_alpha translati 99.9 4.6E-21 9.9E-26 149.3 14.0 153 16-171 4-197 (426)
200 PRK09554 feoB ferrous iron tra 99.9 1.2E-20 2.6E-25 154.6 16.8 152 18-180 2-167 (772)
201 COG1084 Predicted GTPase [Gene 99.9 5.8E-20 1.3E-24 133.6 17.6 170 3-179 150-334 (346)
202 TIGR03680 eif2g_arch translati 99.9 9.2E-21 2E-25 146.5 14.5 162 17-181 2-196 (406)
203 cd04168 TetM_like Tet(M)-like 99.9 5E-20 1.1E-24 132.7 16.4 157 21-182 1-236 (237)
204 PRK05433 GTP-binding protein L 99.9 3.9E-20 8.5E-25 148.5 17.4 157 19-182 7-185 (600)
205 cd04165 GTPBP1_like GTPBP1-lik 99.9 1.3E-20 2.9E-25 134.5 12.9 153 21-178 1-220 (224)
206 PRK10218 GTP-binding protein; 99.9 2.2E-20 4.8E-25 149.4 15.2 161 17-182 3-196 (607)
207 TIGR01394 TypA_BipA GTP-bindin 99.9 5.9E-20 1.3E-24 147.1 17.2 157 21-182 3-192 (594)
208 PRK04000 translation initiatio 99.9 3E-20 6.6E-25 143.6 15.1 163 16-181 6-201 (411)
209 cd01883 EF1_alpha Eukaryotic e 99.9 1.4E-20 2.9E-25 134.5 12.1 147 21-170 1-194 (219)
210 TIGR00437 feoB ferrous iron tr 99.8 2.2E-20 4.7E-25 149.8 13.9 144 26-180 1-154 (591)
211 TIGR00491 aIF-2 translation in 99.8 2.1E-20 4.5E-25 149.2 13.6 156 19-179 4-214 (590)
212 cd01876 YihA_EngB The YihA (En 99.8 1.1E-19 2.4E-24 124.3 14.9 152 21-180 1-170 (170)
213 PRK10512 selenocysteinyl-tRNA- 99.8 3.1E-20 6.8E-25 149.3 13.5 156 21-181 2-166 (614)
214 PF10662 PduV-EutP: Ethanolami 99.8 9.1E-20 2E-24 119.5 12.9 135 21-177 3-142 (143)
215 KOG0077 Vesicle coat complex C 99.8 4E-20 8.8E-25 121.5 11.0 175 3-180 6-192 (193)
216 PRK12736 elongation factor Tu; 99.8 5.7E-20 1.2E-24 141.6 13.5 161 16-181 9-201 (394)
217 COG0370 FeoB Fe2+ transport sy 99.8 2.2E-19 4.7E-24 141.7 16.0 151 18-183 2-166 (653)
218 KOG1489 Predicted GTP-binding 99.8 1.1E-19 2.4E-24 131.3 12.7 156 17-179 194-365 (366)
219 KOG1673 Ras GTPases [General f 99.8 1.4E-20 3E-25 122.5 7.3 162 19-182 20-187 (205)
220 cd04169 RF3 RF3 subfamily. Pe 99.8 2.2E-19 4.7E-24 131.4 14.3 112 20-136 3-138 (267)
221 PRK12735 elongation factor Tu; 99.8 9E-20 2E-24 140.6 12.7 160 17-181 10-203 (396)
222 CHL00071 tufA elongation facto 99.8 1.1E-19 2.4E-24 140.7 12.7 159 17-180 10-210 (409)
223 KOG1423 Ras-like GTPase ERA [C 99.8 3.5E-19 7.6E-24 128.2 13.1 162 17-182 70-272 (379)
224 TIGR00485 EF-Tu translation el 99.8 2E-19 4.4E-24 138.7 12.4 159 16-179 9-199 (394)
225 COG1163 DRG Predicted GTPase [ 99.8 4.4E-19 9.5E-24 128.7 13.2 151 20-181 64-289 (365)
226 PLN03126 Elongation factor Tu; 99.8 6.5E-19 1.4E-23 137.9 14.7 147 16-167 78-248 (478)
227 PRK04004 translation initiatio 99.8 8.3E-19 1.8E-23 140.4 14.9 154 18-179 5-216 (586)
228 PRK00049 elongation factor Tu; 99.8 5.1E-19 1.1E-23 136.4 13.1 159 17-180 10-202 (396)
229 cd04104 p47_IIGP_like p47 (47- 99.8 6.4E-19 1.4E-23 124.0 12.1 158 19-183 1-186 (197)
230 cd04167 Snu114p Snu114p subfam 99.8 9.9E-19 2.1E-23 124.5 13.2 156 21-181 2-211 (213)
231 cd04170 EF-G_bact Elongation f 99.8 2.5E-18 5.3E-23 126.5 15.0 110 21-135 1-130 (268)
232 PRK05124 cysN sulfate adenylyl 99.8 9.8E-19 2.1E-23 137.3 13.5 152 16-172 24-216 (474)
233 cd01886 EF-G Elongation factor 99.8 1.2E-18 2.6E-23 127.7 12.8 111 21-136 1-131 (270)
234 COG2262 HflX GTPases [General 99.8 8.7E-18 1.9E-22 125.7 17.4 155 18-182 191-357 (411)
235 PLN03127 Elongation factor Tu; 99.8 1.8E-18 3.8E-23 134.7 14.3 161 16-181 58-252 (447)
236 PLN00043 elongation factor 1-a 99.8 3.6E-18 7.7E-23 133.1 15.3 152 16-171 4-203 (447)
237 PRK05506 bifunctional sulfate 99.8 3.3E-18 7.1E-23 139.0 15.5 161 7-171 12-211 (632)
238 PRK00741 prfC peptide chain re 99.8 3.9E-18 8.5E-23 135.0 15.3 115 17-136 8-146 (526)
239 COG0536 Obg Predicted GTPase [ 99.8 1.4E-18 3E-23 127.0 11.5 162 19-183 159-335 (369)
240 PTZ00141 elongation factor 1- 99.8 5.1E-18 1.1E-22 132.3 15.2 152 16-171 4-203 (446)
241 KOG1707 Predicted Ras related/ 99.8 5.4E-19 1.2E-23 136.6 9.4 162 16-180 6-174 (625)
242 KOG0090 Signal recognition par 99.8 1.1E-17 2.4E-22 114.7 14.0 162 17-180 36-238 (238)
243 COG5256 TEF1 Translation elong 99.8 1.2E-18 2.5E-23 130.3 9.8 154 17-171 5-201 (428)
244 TIGR02034 CysN sulfate adenyly 99.8 9.1E-18 2E-22 129.9 15.1 148 20-171 1-187 (406)
245 cd01885 EF2 EF2 (for archaea a 99.8 1.4E-17 3.1E-22 118.5 14.4 109 21-134 2-138 (222)
246 PRK13351 elongation factor G; 99.8 1.8E-17 3.9E-22 136.0 16.6 115 17-136 6-140 (687)
247 PTZ00327 eukaryotic translatio 99.8 7.2E-18 1.6E-22 131.2 13.3 162 17-181 32-233 (460)
248 COG0532 InfB Translation initi 99.8 1.8E-17 3.9E-22 127.6 14.0 157 18-180 4-169 (509)
249 KOG3883 Ras family small GTPas 99.8 4.2E-17 9.1E-22 106.1 13.5 164 16-182 6-176 (198)
250 PF01926 MMR_HSR1: 50S ribosom 99.8 4.1E-17 8.9E-22 105.3 13.3 104 21-130 1-116 (116)
251 KOG1191 Mitochondrial GTPase [ 99.8 4.1E-17 8.8E-22 124.2 15.1 167 15-182 264-451 (531)
252 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 5E-18 1.1E-22 114.1 8.7 157 18-181 9-169 (216)
253 PF09439 SRPRB: Signal recogni 99.8 1.9E-18 4E-23 118.2 6.8 121 18-139 2-130 (181)
254 TIGR00484 EF-G translation elo 99.8 3.9E-17 8.5E-22 133.9 15.6 114 17-135 8-141 (689)
255 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 5.5E-17 1.2E-21 114.1 13.7 160 20-182 1-185 (196)
256 TIGR00503 prfC peptide chain r 99.7 7.1E-17 1.5E-21 128.0 15.5 114 17-135 9-146 (527)
257 cd01899 Ygr210 Ygr210 subfamil 99.7 2E-16 4.3E-21 118.1 16.4 155 22-182 1-270 (318)
258 PRK12739 elongation factor G; 99.7 7.5E-17 1.6E-21 132.2 15.0 114 17-135 6-139 (691)
259 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 2.4E-17 5.2E-22 117.5 10.1 158 21-181 1-176 (232)
260 KOG0462 Elongation factor-type 99.7 9.6E-17 2.1E-21 123.5 13.0 157 18-181 59-235 (650)
261 PRK00007 elongation factor G; 99.7 1.4E-16 3.1E-21 130.5 14.6 114 17-135 8-141 (693)
262 cd00066 G-alpha G protein alph 99.7 8.3E-17 1.8E-21 120.7 12.2 134 49-182 146-312 (317)
263 COG3596 Predicted GTPase [Gene 99.7 7E-17 1.5E-21 115.2 11.0 164 16-182 36-223 (296)
264 smart00275 G_alpha G protein a 99.7 1.6E-16 3.6E-21 120.0 13.6 134 49-182 169-335 (342)
265 KOG1145 Mitochondrial translat 99.7 2.6E-16 5.7E-21 121.2 14.5 157 17-180 151-315 (683)
266 PRK09866 hypothetical protein; 99.7 4.6E-16 1E-20 123.0 16.1 112 64-178 230-350 (741)
267 PRK09602 translation-associate 99.7 1.1E-15 2.3E-20 117.4 16.1 79 20-98 2-113 (396)
268 KOG1490 GTP-binding protein CR 99.7 6.2E-17 1.3E-21 123.4 8.3 176 3-180 150-340 (620)
269 PRK12740 elongation factor G; 99.7 2.5E-15 5.5E-20 123.2 15.7 106 25-135 1-126 (668)
270 PRK09435 membrane ATPase/prote 99.7 1E-15 2.2E-20 114.5 10.5 108 62-181 147-260 (332)
271 KOG4423 GTP-binding protein-li 99.7 2.1E-18 4.6E-23 115.5 -3.7 162 20-182 26-195 (229)
272 PRK13768 GTPase; Provisional 99.6 5.8E-16 1.2E-20 112.7 7.9 117 64-181 97-247 (253)
273 KOG1532 GTPase XAB1, interacts 99.6 5.2E-16 1.1E-20 110.6 7.3 117 63-182 115-265 (366)
274 COG5257 GCD11 Translation init 99.6 1.2E-15 2.5E-20 111.0 9.0 162 17-182 8-203 (415)
275 KOG0082 G-protein alpha subuni 99.6 3.3E-15 7.2E-20 111.3 11.7 135 48-182 179-345 (354)
276 COG4917 EutP Ethanolamine util 99.6 2.7E-15 5.8E-20 94.5 9.3 138 21-179 3-144 (148)
277 cd01850 CDC_Septin CDC/Septin. 99.6 9.4E-15 2E-19 107.6 12.8 112 19-136 4-158 (276)
278 COG0481 LepA Membrane GTPase L 99.6 9.9E-15 2.1E-19 111.1 11.5 153 20-182 10-187 (603)
279 COG2895 CysN GTPases - Sulfate 99.6 5.3E-15 1.1E-19 108.8 9.1 148 17-170 4-192 (431)
280 cd01882 BMS1 Bms1. Bms1 is an 99.6 1.2E-14 2.7E-19 104.1 10.7 142 17-167 37-182 (225)
281 KOG0458 Elongation factor 1 al 99.6 6.6E-15 1.4E-19 114.2 9.1 151 18-171 176-372 (603)
282 TIGR00490 aEF-2 translation el 99.6 1.1E-14 2.4E-19 119.9 9.6 113 18-135 18-152 (720)
283 PF04548 AIG1: AIG1 family; I 99.6 3.3E-14 7.2E-19 101.1 9.8 161 20-183 1-188 (212)
284 PRK07560 elongation factor EF- 99.6 3.9E-14 8.5E-19 117.0 11.5 125 5-134 4-152 (731)
285 PF03029 ATP_bind_1: Conserved 99.5 9.5E-15 2.1E-19 105.2 6.2 115 65-180 92-236 (238)
286 COG1217 TypA Predicted membran 99.5 9.9E-14 2.1E-18 105.5 11.8 159 19-182 5-196 (603)
287 PTZ00258 GTP-binding protein; 99.5 3.7E-13 8E-18 102.7 14.7 82 17-98 19-126 (390)
288 cd01853 Toc34_like Toc34-like 99.5 4.9E-13 1.1E-17 96.9 14.2 119 16-136 28-164 (249)
289 KOG0461 Selenocysteine-specifi 99.5 2.5E-13 5.3E-18 100.0 12.5 159 17-181 5-193 (522)
290 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1.8E-12 3.8E-17 95.7 16.9 117 17-135 36-167 (313)
291 PF05049 IIGP: Interferon-indu 99.5 2.2E-13 4.8E-18 102.9 12.1 158 17-183 33-220 (376)
292 PRK14845 translation initiatio 99.5 2.2E-13 4.8E-18 114.4 12.9 145 30-179 472-671 (1049)
293 PLN00116 translation elongatio 99.5 1E-13 2.3E-18 115.8 10.0 113 17-134 17-163 (843)
294 COG3276 SelB Selenocysteine-sp 99.5 1.5E-13 3.3E-18 103.9 9.7 154 21-180 2-161 (447)
295 KOG1486 GTP-binding protein DR 99.5 7.7E-13 1.7E-17 93.5 12.1 152 19-181 62-288 (364)
296 PRK09601 GTP-binding protein Y 99.5 6.7E-13 1.4E-17 100.2 12.6 79 20-98 3-107 (364)
297 PTZ00416 elongation factor 2; 99.5 1.6E-13 3.4E-18 114.6 10.2 113 17-134 17-157 (836)
298 TIGR00101 ureG urease accessor 99.5 1.1E-12 2.4E-17 92.2 12.6 104 63-181 91-196 (199)
299 COG4108 PrfC Peptide chain rel 99.5 5.7E-13 1.2E-17 100.7 10.4 115 17-136 10-148 (528)
300 TIGR00750 lao LAO/AO transport 99.5 2.7E-12 5.8E-17 95.9 14.0 107 62-180 125-237 (300)
301 PF03308 ArgK: ArgK protein; 99.5 2.9E-14 6.3E-19 101.7 3.1 152 17-180 27-229 (266)
302 PF00503 G-alpha: G-protein al 99.4 1.5E-13 3.3E-18 106.1 6.2 131 50-180 221-389 (389)
303 COG0378 HypB Ni2+-binding GTPa 99.4 4.5E-13 9.8E-18 91.4 6.4 146 19-180 13-200 (202)
304 TIGR00073 hypB hydrogenase acc 99.4 7.3E-13 1.6E-17 93.9 7.6 149 17-180 20-206 (207)
305 COG1703 ArgK Putative periplas 99.4 1E-12 2.2E-17 95.2 8.2 108 62-181 142-254 (323)
306 PRK10463 hydrogenase nickel in 99.4 1E-12 2.2E-17 96.3 8.2 57 120-179 229-287 (290)
307 KOG1487 GTP-binding protein DR 99.4 1.7E-12 3.6E-17 92.2 7.2 151 20-181 60-281 (358)
308 KOG0085 G protein subunit Galp 99.4 2E-12 4.3E-17 90.5 7.1 136 47-182 182-350 (359)
309 PF00735 Septin: Septin; Inte 99.4 1.7E-11 3.6E-16 90.4 12.0 120 19-144 4-165 (281)
310 COG0050 TufB GTPases - transla 99.4 1.4E-11 3E-16 89.1 10.9 161 16-181 9-201 (394)
311 COG0012 Predicted GTPase, prob 99.4 1.3E-11 2.9E-16 92.2 11.2 81 19-99 2-109 (372)
312 smart00053 DYNc Dynamin, GTPas 99.4 1.3E-10 2.9E-15 83.6 16.0 70 64-137 125-208 (240)
313 KOG1144 Translation initiation 99.3 5.8E-12 1.3E-16 100.6 9.2 155 19-181 475-687 (1064)
314 COG0480 FusA Translation elong 99.3 6.4E-12 1.4E-16 102.1 9.4 115 17-136 8-143 (697)
315 PF00350 Dynamin_N: Dynamin fa 99.3 1.4E-11 2.9E-16 84.5 9.7 64 64-131 101-168 (168)
316 TIGR02836 spore_IV_A stage IV 99.3 1.3E-10 2.9E-15 88.3 15.1 151 17-176 15-232 (492)
317 KOG3905 Dynein light intermedi 99.3 2.1E-10 4.6E-15 84.1 14.3 177 3-180 33-289 (473)
318 smart00010 small_GTPase Small 99.3 5.1E-12 1.1E-16 82.1 5.4 114 20-170 1-115 (124)
319 cd01900 YchF YchF subfamily. 99.3 2.3E-11 5E-16 89.1 9.0 77 22-98 1-103 (274)
320 PF05783 DLIC: Dynein light in 99.3 2E-10 4.2E-15 89.9 14.5 176 3-181 6-264 (472)
321 KOG3886 GTP-binding protein [S 99.3 1.7E-11 3.7E-16 85.7 7.0 146 19-166 4-164 (295)
322 KOG1707 Predicted Ras related/ 99.3 2.4E-10 5.1E-15 89.4 13.9 151 17-180 423-582 (625)
323 TIGR00993 3a0901s04IAP86 chlor 99.3 2.4E-10 5.2E-15 91.5 13.5 116 18-135 117-250 (763)
324 TIGR00157 ribosome small subun 99.2 2.4E-11 5.2E-16 88.2 6.6 95 75-178 24-120 (245)
325 COG5258 GTPBP1 GTPase [General 99.2 3.2E-11 7E-16 90.1 7.2 157 16-177 114-335 (527)
326 KOG0099 G protein subunit Galp 99.2 5.1E-11 1.1E-15 84.8 7.2 132 51-182 189-370 (379)
327 KOG0468 U5 snRNP-specific prot 99.2 9.8E-11 2.1E-15 92.8 8.0 112 18-134 127-262 (971)
328 KOG1547 Septin CDC10 and relat 99.2 5E-10 1.1E-14 79.0 10.6 141 5-150 30-213 (336)
329 KOG0410 Predicted GTP binding 99.2 1.4E-10 3E-15 85.0 8.1 149 18-181 177-341 (410)
330 COG5019 CDC3 Septin family pro 99.1 1.5E-09 3.4E-14 80.9 12.4 120 18-143 22-184 (373)
331 KOG3887 Predicted small GTPase 99.1 8.7E-10 1.9E-14 77.8 9.3 159 20-181 28-202 (347)
332 cd01859 MJ1464 MJ1464. This f 99.1 6.6E-10 1.4E-14 75.3 8.5 96 77-182 2-97 (156)
333 KOG2655 Septin family protein 99.1 3.8E-09 8.3E-14 79.3 12.0 115 19-139 21-176 (366)
334 cd01855 YqeH YqeH. YqeH is an 99.1 4.2E-10 9E-15 78.8 6.6 100 75-181 22-125 (190)
335 KOG0448 Mitofusin 1 GTPase, in 99.1 2.1E-09 4.6E-14 85.6 10.8 147 14-165 104-310 (749)
336 KOG0466 Translation initiation 99.0 2.2E-10 4.8E-15 83.4 4.1 115 64-181 125-241 (466)
337 cd01858 NGP_1 NGP-1. Autoanti 99.0 1.8E-09 3.9E-14 73.3 8.4 53 18-73 101-156 (157)
338 KOG0460 Mitochondrial translat 99.0 3E-09 6.6E-14 78.6 9.9 160 17-180 52-244 (449)
339 KOG0705 GTPase-activating prot 99.0 3.5E-10 7.7E-15 87.9 4.7 160 18-182 29-190 (749)
340 KOG2486 Predicted GTPase [Gene 99.0 1.3E-09 2.9E-14 78.3 7.2 158 17-179 134-314 (320)
341 cd04178 Nucleostemin_like Nucl 99.0 2.1E-09 4.5E-14 73.9 8.0 53 18-73 116-171 (172)
342 TIGR00092 GTP-binding protein 99.0 4E-09 8.8E-14 80.0 10.0 80 20-99 3-109 (368)
343 KOG0467 Translation elongation 98.9 2.2E-09 4.9E-14 86.3 7.0 106 19-132 9-135 (887)
344 PRK12289 GTPase RsgA; Reviewed 98.9 3.6E-09 7.9E-14 80.4 7.9 89 81-178 83-172 (352)
345 cd01855 YqeH YqeH. YqeH is an 98.9 3.7E-09 8E-14 74.0 7.3 65 5-73 114-189 (190)
346 KOG1143 Predicted translation 98.9 1.2E-09 2.6E-14 81.7 5.0 153 19-176 167-383 (591)
347 cd01858 NGP_1 NGP-1. Autoanti 98.9 4.4E-09 9.6E-14 71.3 7.5 91 83-180 4-94 (157)
348 KOG0447 Dynamin-like GTP bindi 98.9 5.8E-08 1.3E-12 76.1 14.2 109 64-175 412-538 (980)
349 TIGR03596 GTPase_YlqF ribosome 98.9 6E-09 1.3E-13 77.1 7.5 100 71-182 4-104 (276)
350 cd01856 YlqF YlqF. Proteins o 98.9 1.1E-08 2.4E-13 70.4 8.2 98 71-180 2-100 (171)
351 KOG0459 Polypeptide release fa 98.9 1.1E-09 2.4E-14 82.4 3.4 156 17-173 77-278 (501)
352 KOG1954 Endocytosis/signaling 98.9 3.3E-08 7.2E-13 74.0 10.7 115 18-136 57-226 (532)
353 cd01856 YlqF YlqF. Proteins o 98.9 1.6E-08 3.4E-13 69.7 8.2 55 17-74 113-170 (171)
354 cd01854 YjeQ_engC YjeQ/EngC. 98.9 1.1E-08 2.4E-13 76.0 8.0 88 82-178 73-161 (287)
355 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 9.4E-09 2E-13 68.5 6.6 52 20-74 84-138 (141)
356 KOG1491 Predicted GTP-binding 98.9 1.6E-08 3.5E-13 74.7 8.1 83 17-99 18-126 (391)
357 PRK12288 GTPase RsgA; Reviewed 98.8 2.4E-08 5.2E-13 75.9 9.0 90 84-179 117-206 (347)
358 TIGR03597 GTPase_YqeH ribosome 98.8 1.2E-08 2.6E-13 78.2 6.9 98 74-179 50-151 (360)
359 cd01849 YlqF_related_GTPase Yl 98.8 2.1E-08 4.5E-13 67.9 7.4 82 89-179 1-83 (155)
360 cd01849 YlqF_related_GTPase Yl 98.8 2.5E-08 5.4E-13 67.5 7.7 54 17-73 98-154 (155)
361 TIGR03597 GTPase_YqeH ribosome 98.8 1.7E-08 3.7E-13 77.3 7.1 124 5-138 142-283 (360)
362 PRK00098 GTPase RsgA; Reviewed 98.8 1.9E-08 4.1E-13 75.2 7.1 85 84-177 77-163 (298)
363 PRK14974 cell division protein 98.8 3.5E-08 7.5E-13 74.5 8.5 94 63-173 222-322 (336)
364 PRK09563 rbgA GTPase YlqF; Rev 98.8 1.9E-08 4E-13 74.9 6.8 101 70-182 6-107 (287)
365 cd01859 MJ1464 MJ1464. This f 98.8 4.6E-08 1E-12 66.2 8.3 55 18-73 100-155 (156)
366 TIGR03596 GTPase_YlqF ribosome 98.8 3.1E-08 6.8E-13 73.3 8.0 54 18-74 117-173 (276)
367 cd01851 GBP Guanylate-binding 98.8 3.6E-07 7.7E-12 65.6 13.1 84 17-100 5-104 (224)
368 PRK09563 rbgA GTPase YlqF; Rev 98.8 5.1E-08 1.1E-12 72.5 9.1 55 17-74 119-176 (287)
369 KOG0463 GTP-binding protein GP 98.8 2.1E-08 4.5E-13 75.3 6.7 153 19-176 133-353 (641)
370 KOG0465 Mitochondrial elongati 98.8 8.7E-09 1.9E-13 81.2 4.4 114 17-135 37-170 (721)
371 COG1161 Predicted GTPases [Gen 98.7 4.3E-08 9.2E-13 74.0 7.7 66 7-75 119-188 (322)
372 PRK10416 signal recognition pa 98.7 8.3E-08 1.8E-12 72.2 8.9 95 62-173 195-302 (318)
373 TIGR00064 ftsY signal recognit 98.7 2.1E-07 4.5E-12 68.6 10.4 95 62-173 153-260 (272)
374 COG1618 Predicted nucleotide k 98.7 1.2E-06 2.7E-11 58.4 12.6 148 17-183 3-178 (179)
375 KOG0464 Elongation factor G [T 98.7 9.1E-09 2E-13 78.1 2.2 115 19-138 37-171 (753)
376 PF03193 DUF258: Protein of un 98.7 4.5E-08 9.8E-13 66.0 5.2 23 20-42 36-58 (161)
377 PRK13796 GTPase YqeH; Provisio 98.7 9.5E-08 2.1E-12 73.3 7.5 66 5-75 148-221 (365)
378 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 8.7E-08 1.9E-12 63.8 6.2 80 81-168 5-84 (141)
379 TIGR01425 SRP54_euk signal rec 98.7 1.8E-07 3.8E-12 72.7 8.6 111 19-136 100-254 (429)
380 COG5192 BMS1 GTP-binding prote 98.6 4.2E-07 9E-12 71.8 10.3 141 17-165 67-210 (1077)
381 KOG3859 Septins (P-loop GTPase 98.6 9.9E-08 2.1E-12 69.0 6.4 132 4-140 25-195 (406)
382 PRK12288 GTPase RsgA; Reviewed 98.6 1.5E-07 3.4E-12 71.5 7.5 54 21-77 207-270 (347)
383 PRK13796 GTPase YqeH; Provisio 98.5 4.6E-07 9.9E-12 69.6 8.1 98 75-180 57-158 (365)
384 cd03112 CobW_like The function 98.5 6.7E-07 1.4E-11 60.7 7.9 21 22-42 3-23 (158)
385 cd03114 ArgK-like The function 98.5 3E-07 6.4E-12 61.7 5.5 59 62-132 90-148 (148)
386 PRK12289 GTPase RsgA; Reviewed 98.5 4.2E-07 9.2E-12 69.2 6.8 22 21-42 174-195 (352)
387 TIGR00157 ribosome small subun 98.5 7.6E-07 1.7E-11 64.7 7.5 52 21-76 122-183 (245)
388 TIGR03348 VI_IcmF type VI secr 98.4 2.1E-06 4.5E-11 75.0 10.6 113 21-135 113-257 (1169)
389 PRK01889 GTPase RsgA; Reviewed 98.4 3.2E-06 6.9E-11 64.8 9.2 84 85-177 110-193 (356)
390 PF00448 SRP54: SRP54-type pro 98.4 5.1E-07 1.1E-11 63.4 4.3 68 62-136 82-155 (196)
391 cd03115 SRP The signal recogni 98.3 1.5E-06 3.2E-11 59.9 6.2 67 63-136 82-154 (173)
392 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2.6E-06 5.6E-11 63.4 7.3 24 20-43 162-185 (287)
393 COG1162 Predicted GTPases [Gen 98.3 2.2E-06 4.7E-11 63.2 6.6 54 21-77 166-229 (301)
394 KOG1424 Predicted GTP-binding 98.3 1.1E-06 2.5E-11 68.4 5.1 52 19-73 314-368 (562)
395 COG0523 Putative GTPases (G3E 98.3 2.3E-05 5.1E-10 59.0 11.6 93 62-163 83-184 (323)
396 PF02492 cobW: CobW/HypB/UreG, 98.3 5.8E-07 1.3E-11 62.3 2.8 68 63-137 84-157 (178)
397 PRK11537 putative GTP-binding 98.3 1.1E-05 2.3E-10 60.9 9.6 67 64-136 91-165 (318)
398 PRK00771 signal recognition pa 98.3 7.4E-06 1.6E-10 64.2 9.0 65 64-135 176-246 (437)
399 PRK10867 signal recognition pa 98.3 5.1E-06 1.1E-10 65.0 8.0 67 62-135 182-254 (433)
400 TIGR00959 ffh signal recogniti 98.2 5.2E-06 1.1E-10 64.9 7.6 66 62-134 181-252 (428)
401 PRK14722 flhF flagellar biosyn 98.2 1.3E-05 2.8E-10 61.5 9.6 118 18-135 136-295 (374)
402 KOG1534 Putative transcription 98.2 6.9E-06 1.5E-10 57.3 7.3 74 64-141 98-184 (273)
403 PRK00098 GTPase RsgA; Reviewed 98.2 3.4E-06 7.4E-11 63.2 6.3 25 19-43 164-188 (298)
404 PRK11889 flhF flagellar biosyn 98.2 8.6E-06 1.9E-10 62.6 7.9 111 19-136 241-392 (436)
405 COG1419 FlhF Flagellar GTP-bin 98.2 3E-05 6.5E-10 59.5 10.2 110 19-135 203-352 (407)
406 PRK12727 flagellar biosynthesi 98.2 3.5E-05 7.6E-10 61.4 10.6 112 17-135 348-498 (559)
407 PRK14723 flhF flagellar biosyn 98.1 1.7E-05 3.7E-10 65.7 8.8 21 20-40 186-206 (767)
408 PRK06995 flhF flagellar biosyn 98.1 3.4E-05 7.4E-10 61.1 9.8 22 19-40 256-277 (484)
409 PRK12723 flagellar biosynthesi 98.1 0.00044 9.4E-09 53.6 15.2 111 19-136 174-327 (388)
410 PF09547 Spore_IV_A: Stage IV 98.1 0.00018 4E-09 55.5 12.7 24 17-40 15-38 (492)
411 PRK12724 flagellar biosynthesi 98.1 2.5E-05 5.5E-10 60.6 8.0 110 20-136 224-374 (432)
412 KOG2484 GTPase [General functi 98.0 5.4E-06 1.2E-10 62.9 3.3 57 16-73 249-306 (435)
413 COG0541 Ffh Signal recognition 98.0 1.4E-05 3.1E-10 61.5 5.6 66 62-134 181-252 (451)
414 PRK14721 flhF flagellar biosyn 98.0 5.4E-05 1.2E-09 59.0 8.7 24 18-41 190-213 (420)
415 KOG2485 Conserved ATP/GTP bind 98.0 2.2E-05 4.8E-10 57.9 6.1 57 17-74 141-206 (335)
416 PRK13695 putative NTPase; Prov 97.9 0.00037 8.1E-09 48.0 11.4 21 20-40 1-21 (174)
417 COG3640 CooC CO dehydrogenase 97.9 3E-05 6.5E-10 55.1 5.7 64 64-134 134-198 (255)
418 PRK05703 flhF flagellar biosyn 97.9 0.0002 4.3E-09 56.3 10.6 68 62-136 298-372 (424)
419 TIGR02475 CobW cobalamin biosy 97.9 0.00024 5.2E-09 54.3 10.7 21 22-42 7-27 (341)
420 cd01983 Fer4_NifH The Fer4_Nif 97.9 0.00025 5.4E-09 43.4 8.6 69 22-100 2-71 (99)
421 PRK06731 flhF flagellar biosyn 97.8 8.7E-05 1.9E-09 54.7 7.1 111 19-136 75-226 (270)
422 KOG2423 Nucleolar GTPase [Gene 97.8 1.5E-05 3.3E-10 60.6 3.1 90 6-101 293-388 (572)
423 COG0552 FtsY Signal recognitio 97.8 6.4E-05 1.4E-09 56.2 5.8 139 18-173 138-327 (340)
424 KOG0780 Signal recognition par 97.8 3.1E-05 6.7E-10 58.8 4.2 51 60-110 180-236 (483)
425 PRK12726 flagellar biosynthesi 97.8 6.1E-05 1.3E-09 57.7 5.7 23 18-40 205-227 (407)
426 cd00009 AAA The AAA+ (ATPases 97.8 0.00071 1.5E-08 44.5 10.4 25 18-42 18-42 (151)
427 PF13401 AAA_22: AAA domain; P 97.8 2.6E-05 5.6E-10 50.9 3.2 23 20-42 5-27 (131)
428 COG3523 IcmF Type VI protein s 97.8 9.8E-05 2.1E-09 63.9 7.1 113 21-135 127-270 (1188)
429 cd01129 PulE-GspE PulE/GspE Th 97.7 0.00029 6.2E-09 51.9 8.8 41 2-42 63-103 (264)
430 cd04178 Nucleostemin_like Nucl 97.7 3.5E-05 7.6E-10 53.0 3.5 55 89-146 1-55 (172)
431 PF13207 AAA_17: AAA domain; P 97.7 3.8E-05 8.2E-10 49.5 3.2 21 21-41 1-21 (121)
432 PRK04195 replication factor C 97.7 0.00068 1.5E-08 54.3 11.0 39 4-42 23-62 (482)
433 PRK10751 molybdopterin-guanine 97.7 0.00011 2.3E-09 50.5 5.3 22 20-41 7-28 (173)
434 COG1162 Predicted GTPases [Gen 97.7 0.0002 4.4E-09 53.0 7.1 86 85-179 77-165 (301)
435 PRK08118 topology modulation p 97.7 4.3E-05 9.3E-10 52.4 3.1 21 21-41 3-23 (167)
436 KOG0469 Elongation factor 2 [T 97.6 6.6E-05 1.4E-09 59.0 4.2 119 10-133 8-162 (842)
437 PF05673 DUF815: Protein of un 97.6 0.00062 1.3E-08 49.1 8.8 24 18-41 51-74 (249)
438 PRK07261 topology modulation p 97.6 4.9E-05 1.1E-09 52.3 3.1 21 21-41 2-22 (171)
439 KOG0781 Signal recognition par 97.6 0.00039 8.4E-09 54.4 8.2 128 17-145 376-554 (587)
440 PF13555 AAA_29: P-loop contai 97.6 6.3E-05 1.4E-09 42.3 2.9 20 21-40 25-44 (62)
441 TIGR03574 selen_PSTK L-seryl-t 97.6 0.00021 4.6E-09 52.2 6.4 19 22-40 2-20 (249)
442 cd02038 FleN-like FleN is a me 97.6 0.0017 3.7E-08 43.0 10.2 104 24-133 5-109 (139)
443 PF13671 AAA_33: AAA domain; P 97.6 5.4E-05 1.2E-09 50.2 3.0 19 22-40 2-20 (143)
444 PF06858 NOG1: Nucleolar GTP-b 97.6 8.9E-05 1.9E-09 40.8 3.2 45 86-132 12-58 (58)
445 COG0563 Adk Adenylate kinase a 97.6 5.8E-05 1.3E-09 52.2 3.1 23 20-42 1-23 (178)
446 PF05729 NACHT: NACHT domain 97.6 0.00057 1.2E-08 46.3 7.8 20 22-41 3-22 (166)
447 PF05621 TniB: Bacterial TniB 97.6 0.00088 1.9E-08 49.8 9.0 102 20-131 62-190 (302)
448 cd02019 NK Nucleoside/nucleoti 97.6 8.5E-05 1.9E-09 43.0 3.0 21 22-42 2-22 (69)
449 PRK01889 GTPase RsgA; Reviewed 97.5 0.00025 5.5E-09 54.5 6.3 25 18-42 194-218 (356)
450 KOG1533 Predicted GTPase [Gene 97.5 0.00011 2.5E-09 52.2 3.9 72 63-135 96-177 (290)
451 COG1161 Predicted GTPases [Gen 97.5 0.00023 5.1E-09 53.9 5.9 97 67-174 13-110 (322)
452 cd03116 MobB Molybdenum is an 97.5 9.5E-05 2.1E-09 50.2 3.3 51 21-78 3-53 (159)
453 cd03111 CpaE_like This protein 97.5 0.001 2.2E-08 42.0 7.8 102 23-130 3-106 (106)
454 cd02042 ParA ParA and ParB of 97.5 0.0012 2.6E-08 41.3 8.0 78 22-108 2-81 (104)
455 PF13521 AAA_28: AAA domain; P 97.5 6E-05 1.3E-09 51.4 2.1 22 21-42 1-22 (163)
456 TIGR00150 HI0065_YjeE ATPase, 97.5 0.0008 1.7E-08 44.2 7.1 37 5-42 9-45 (133)
457 PRK09270 nucleoside triphospha 97.5 0.00025 5.4E-09 51.1 5.2 38 4-41 16-55 (229)
458 PRK05480 uridine/cytidine kina 97.5 0.00012 2.6E-09 52.0 3.6 27 15-41 2-28 (209)
459 PF03215 Rad17: Rad17 cell cyc 97.5 0.0013 2.8E-08 52.9 9.6 39 3-41 27-67 (519)
460 PF00437 T2SE: Type II/IV secr 97.5 0.00024 5.2E-09 52.5 5.1 25 17-41 125-149 (270)
461 COG1116 TauB ABC-type nitrate/ 97.4 0.00011 2.4E-09 52.8 2.9 23 19-41 29-51 (248)
462 COG1763 MobB Molybdopterin-gua 97.4 0.0016 3.4E-08 44.2 8.3 19 22-40 5-23 (161)
463 PF13191 AAA_16: AAA ATPase do 97.4 0.00014 3E-09 50.3 3.4 36 5-40 10-45 (185)
464 PRK06696 uridine kinase; Valid 97.4 0.00029 6.4E-09 50.6 5.2 37 4-40 7-43 (223)
465 PF03266 NTPase_1: NTPase; In 97.4 0.00013 2.8E-09 50.1 3.1 129 21-167 1-161 (168)
466 cd01130 VirB11-like_ATPase Typ 97.4 0.00016 3.4E-09 50.5 3.5 35 6-41 13-47 (186)
467 PF00005 ABC_tran: ABC transpo 97.4 0.00011 2.5E-09 48.3 2.7 26 16-41 8-33 (137)
468 PLN02674 adenylate kinase 97.4 0.00024 5.2E-09 51.5 4.4 38 2-40 15-52 (244)
469 COG1136 SalX ABC-type antimicr 97.4 0.00012 2.6E-09 52.3 2.8 24 17-40 29-52 (226)
470 PRK13851 type IV secretion sys 97.4 0.0016 3.4E-08 49.8 9.0 27 16-42 159-185 (344)
471 PRK13900 type IV secretion sys 97.4 0.0013 2.8E-08 50.1 8.2 27 16-42 157-183 (332)
472 PF00004 AAA: ATPase family as 97.4 0.00018 3.9E-09 46.8 3.0 21 22-42 1-21 (132)
473 PF04665 Pox_A32: Poxvirus A32 97.4 0.0002 4.4E-09 51.7 3.4 27 15-41 9-35 (241)
474 TIGR00235 udk uridine kinase. 97.3 0.00022 4.8E-09 50.6 3.5 25 17-41 4-28 (207)
475 smart00382 AAA ATPases associa 97.3 0.00021 4.6E-09 46.6 3.2 25 20-44 3-27 (148)
476 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00033 7.1E-09 53.4 4.5 38 4-41 60-100 (361)
477 PRK06217 hypothetical protein; 97.3 0.00019 4.2E-09 49.9 3.0 22 20-41 2-23 (183)
478 PHA00729 NTP-binding motif con 97.3 0.00041 8.9E-09 49.6 4.6 35 5-42 6-40 (226)
479 cd03238 ABC_UvrA The excision 97.3 0.00023 4.9E-09 49.2 3.0 25 16-40 18-42 (176)
480 PRK03839 putative kinase; Prov 97.3 0.00024 5.1E-09 49.2 3.1 21 21-41 2-22 (180)
481 COG1126 GlnQ ABC-type polar am 97.3 0.00035 7.7E-09 49.3 3.9 25 17-41 26-50 (240)
482 PF13238 AAA_18: AAA domain; P 97.3 0.00023 5E-09 46.1 2.9 21 22-42 1-21 (129)
483 cd03264 ABC_drug_resistance_li 97.3 0.00021 4.5E-09 50.8 2.8 25 16-41 23-47 (211)
484 PRK13833 conjugal transfer pro 97.3 0.001 2.2E-08 50.3 6.6 33 9-42 135-167 (323)
485 cd00071 GMPK Guanosine monopho 97.3 0.00024 5.3E-09 47.0 2.9 21 22-42 2-22 (137)
486 PRK14530 adenylate kinase; Pro 97.3 0.00025 5.4E-09 50.6 3.1 21 20-40 4-24 (215)
487 TIGR02322 phosphon_PhnN phosph 97.3 0.00024 5.2E-09 49.1 3.0 22 21-42 3-24 (179)
488 PRK00300 gmk guanylate kinase; 97.3 0.00029 6.2E-09 49.8 3.4 27 16-42 2-28 (205)
489 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00026 5.6E-09 44.6 2.7 24 17-40 13-36 (107)
490 cd02036 MinD Bacterial cell di 97.3 0.011 2.3E-07 40.6 11.2 65 65-135 64-128 (179)
491 PRK10646 ADP-binding protein; 97.3 0.0077 1.7E-07 40.5 9.9 37 5-42 15-51 (153)
492 PF03205 MobB: Molybdopterin g 97.2 0.00032 7E-09 46.6 3.2 21 21-41 2-22 (140)
493 COG1120 FepC ABC-type cobalami 97.2 0.00025 5.5E-09 51.6 2.9 24 18-41 27-50 (258)
494 PRK10078 ribose 1,5-bisphospho 97.2 0.00027 5.9E-09 49.2 3.0 22 21-42 4-25 (186)
495 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00026 5.7E-09 49.2 2.9 21 20-40 4-24 (188)
496 cd02023 UMPK Uridine monophosp 97.2 0.00027 5.8E-09 49.8 2.9 20 22-41 2-21 (198)
497 PRK08233 hypothetical protein; 97.2 0.00035 7.6E-09 48.3 3.4 23 19-41 3-25 (182)
498 TIGR02533 type_II_gspE general 97.2 0.0044 9.4E-08 49.7 9.9 41 2-42 225-265 (486)
499 TIGR01526 nadR_NMN_Atrans nico 97.2 0.00028 6E-09 53.6 3.1 22 20-41 163-184 (325)
500 COG1124 DppF ABC-type dipeptid 97.2 0.0012 2.5E-08 47.4 5.9 67 17-83 31-103 (252)
No 1
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1e-34 Score=201.81 Aligned_cols=179 Identities=31% Similarity=0.600 Sum_probs=146.1
Q ss_pred Cc-hHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHH
Q 030008 1 MG-LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 79 (184)
|| ++..+.+. .+.+++++|+++|++|||||||++++..+.+.. ..||.+.....+..++..+.+||+||++++..
T Consensus 1 ~~~~~~~~~~~---~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 76 (182)
T PTZ00133 1 MGLWLSSAFKS---LFGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDKLRP 76 (182)
T ss_pred CchHHHHHHHH---hcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEECCEEEEEEECCCCHhHHH
Confidence 77 45555433 355678999999999999999999998777754 56788877777777889999999999999999
Q ss_pred hHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEE
Q 030008 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCF 159 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+..+++++|++++|+|+++++++.....++..++.......+|+++|+||.|+.+....+++....+........+.++
T Consensus 77 ~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~ 156 (182)
T PTZ00133 77 LWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQ 156 (182)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEE
Confidence 99999999999999999999998988888888776553345689999999999976555566666666544444556778
Q ss_pred EeeecCCCCHHHHHHHHHHhhhcC
Q 030008 160 MISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
++||++|.|+++++++|.+.+.++
T Consensus 157 ~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 157 GCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999877654
No 2
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.5e-34 Score=200.89 Aligned_cols=169 Identities=34% Similarity=0.657 Sum_probs=143.7
Q ss_pred hcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 14 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 14 ~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++.++|+++|++|||||||++++..+.+. .+.||.+.....+..++..+.+||+||+++++.++..+++++|++++
T Consensus 12 ~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 12 LFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 34467899999999999999999999977775 46788887777777888999999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|+++++++.....++..++.......+|+++|+||+|+......+++....+........+.++++||++|+|++++|
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~ 170 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHH
Confidence 99999999998888888877665444579999999999998776777777777654444455667789999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
++|.+.+.+|
T Consensus 171 ~~l~~~~~~~ 180 (181)
T PLN00223 171 DWLSNNIANK 180 (181)
T ss_pred HHHHHHHhhc
Confidence 9999988765
No 3
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=3.6e-34 Score=196.77 Aligned_cols=163 Identities=34% Similarity=0.642 Sum_probs=136.7
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.++.++|+++|++|+|||||++++..+.+. ...||.+.....+......+.+||+||++++...+..+++++|++++|
T Consensus 5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 5 FGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred cCCCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4467899999999999999999999877665 456788877666777789999999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+|++++.++.....++..++......++|+++|+||+|+......+++....+........++++++||++|.|++++|+
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~ 163 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT 163 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHH
Confidence 99999999999888888887654445789999999999976556666666665544444556799999999999999999
Q ss_pred HHHH
Q 030008 175 WLVK 178 (184)
Q Consensus 175 ~i~~ 178 (184)
+|.+
T Consensus 164 ~l~~ 167 (168)
T cd04149 164 WLSS 167 (168)
T ss_pred HHhc
Confidence 9865
No 4
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=1.3e-33 Score=195.28 Aligned_cols=164 Identities=34% Similarity=0.649 Sum_probs=138.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
++.++|+++|++|||||||++++..+.+. .+.||.+.....+......+.+||+||++++...+..++++++++++|+|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D 89 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVD 89 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEE
Confidence 56799999999999999999999877764 46688887766677778899999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++++++.....++..++.......+|+++|+||+|+.+....+++....+........+.++++||++|.|+++++++|
T Consensus 90 ~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 169 (175)
T smart00177 90 SNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWL 169 (175)
T ss_pred CCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 99999999988888888765444578999999999997655566666666655555556678899999999999999999
Q ss_pred HHhhh
Q 030008 177 VKHSK 181 (184)
Q Consensus 177 ~~~l~ 181 (184)
.+.+.
T Consensus 170 ~~~~~ 174 (175)
T smart00177 170 SNNLK 174 (175)
T ss_pred HHHhc
Confidence 87754
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-34 Score=193.94 Aligned_cols=163 Identities=23% Similarity=0.381 Sum_probs=142.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+.+||+++|+.++||||||++++.+.+...+.+|+|..+.. +....+.+++|||+||++++.+.+.|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 44999999999999999999999999999999999976544 33455889999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|||+++..+|+....|+.++.......++-+++|+||.|+.+. .++..+.+...++..+..|+++||+.|.||+++|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 9999999999999999999988766566889999999999854 4555555555566666789999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
..|...++..
T Consensus 178 rrIaa~l~~~ 187 (221)
T KOG0094|consen 178 RRIAAALPGM 187 (221)
T ss_pred HHHHHhccCc
Confidence 9999888754
No 6
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=100.00 E-value=2e-34 Score=184.78 Aligned_cols=182 Identities=77% Similarity=1.232 Sum_probs=173.0
Q ss_pred CchHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHh
Q 030008 1 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (184)
|+++++.+.|+.+.+.+.++.+.++|-.+||||||+|.+..+++.....||.+...+++..+++.+.+||.||+++++.+
T Consensus 2 ~~~~~k~L~wi~~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsm 81 (186)
T KOG0075|consen 2 CAKLRKKLVWICNSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 81 (186)
T ss_pred hhHHHHHHHHHHHHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEE
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
|..+.+.+++++||+|+.+++........+.+++......++|+++.+||.|+...-....+..++++......+..++.
T Consensus 82 WerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~s 161 (186)
T KOG0075|consen 82 WERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFS 161 (186)
T ss_pred HHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEE
Confidence 99999999999999999999999999999999999988899999999999999988888999999999888888899999
Q ss_pred eeecCCCCHHHHHHHHHHhhhc
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+|+++..|++.+.++|.+....
T Consensus 162 iScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 162 ISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred EEEcCCccHHHHHHHHHHHhhh
Confidence 9999999999999999987543
No 7
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=4.5e-33 Score=189.78 Aligned_cols=158 Identities=33% Similarity=0.657 Sum_probs=132.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
+||+++|.+|||||||++++..+.+. .+.||.+.....+..+...+.+||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~ 79 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC
Confidence 48999999999999999999877776 46788887766677788999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 100 PDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
++++.....++..++........|+++++||+|+.+....+++.............+.++++||++|.|++++|++|.+
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 80 RERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 9999988888888775544456899999999999765455555555544434445667889999999999999999864
No 8
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-34 Score=192.41 Aligned_cols=162 Identities=24% Similarity=0.411 Sum_probs=135.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...+||+++|+.|+|||+|+.||....+...+..|++..+.. ++.+..++++|||+||++++..+.+++++++++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 567999999999999999999999999999999999977654 3345578999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCccee-EEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVC-CFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~ 170 (184)
+|||+++.+||.++..|+.++-.+.. .++|.++|+||+|+.+.... .+..+. .....+.+ ++++||+++.||+
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~-~~v~~lLVGNK~Dl~~~~~v~~~~a~~----fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYAS-ENVPKLLVGNKCDLTEKRVVSTEEAQE----FADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhcc-CCCCeEEEeeccccHhheecCHHHHHH----HHHhcCCcceeecccCCccCHH
Confidence 99999999999999999999876644 56899999999999753221 121222 22233445 9999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
+.|..|...+.++
T Consensus 162 ~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 162 DAFLTLAKELKQR 174 (205)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887664
No 9
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-34 Score=191.14 Aligned_cols=163 Identities=23% Similarity=0.394 Sum_probs=134.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..++||+++|+.++|||||+-|+..+.+.+...+|++-.+.. +..+ ..+|.+|||+|+++|..+.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 467999999999999999999999999999889999944433 3333 488999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|||+++.+||.....|+.++-.... +++-+.+|+||+|+.+.-. +..+.....+...+..|+++||++|.||+++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~---V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERRE---VEFEEAQAYAESQGLLFFETSAKTGENVNEI 158 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhccc---ccHHHHHHHHHhcCCEEEEEecccccCHHHH
Confidence 99999999999999999999977654 6677888999999986211 1111111222335567999999999999999
Q ss_pred HHHHHHhhhcC
Q 030008 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~l~~~ 183 (184)
|..|.+.++..
T Consensus 159 f~~Ia~~lp~~ 169 (200)
T KOG0092|consen 159 FQAIAEKLPCS 169 (200)
T ss_pred HHHHHHhccCc
Confidence 99999988764
No 10
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=4e-32 Score=187.73 Aligned_cols=161 Identities=30% Similarity=0.576 Sum_probs=135.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
++.++|+++|++|+|||||++++..+.+.. ..+|.+.....+..+...+.+||+||++.+...+..+++.+|++++|+|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID 91 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence 467999999999999999999999877764 5778887777777788999999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++++++.....++..++.......+|+++++||+|+......+++.+.+.........++++++||++|.|+++++++|
T Consensus 92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 99998888887777777665444579999999999997655566666666544444456689999999999999999998
Q ss_pred HH
Q 030008 177 VK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 172 ~~ 173 (174)
T cd04153 172 AS 173 (174)
T ss_pred hc
Confidence 65
No 11
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1e-31 Score=187.21 Aligned_cols=175 Identities=32% Similarity=0.547 Sum_probs=143.1
Q ss_pred chHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhH
Q 030008 2 GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 81 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 81 (184)
.||..+.+|+.. .++.++|+++|.+|+|||||++++.++.+. ...||.+.....+..++.++.+||+||+..+...+
T Consensus 2 ~~~~~~~~~~~~--~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 78 (184)
T smart00178 2 DWFYDILASLGL--WNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLW 78 (184)
T ss_pred hHHHHHHHHhcc--ccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEECCEEEEEEECCCCHHHHHHH
Confidence 577888764321 267799999999999999999999977664 34667776666777778999999999999999999
Q ss_pred HHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCccc-------Cc
Q 030008 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSIT-------DR 154 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~ 154 (184)
..++.+++++++|+|+++++++.....++..++......++|+++|+||+|+......+++.+.+...... ..
T Consensus 79 ~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~ 158 (184)
T smart00178 79 KDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVR 158 (184)
T ss_pred HHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCc
Confidence 99999999999999999998888888788777665444578999999999997666777777777654321 24
Q ss_pred ceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 155 EVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
.+.+++|||++|.|+++++++|...
T Consensus 159 ~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 159 PLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eeEEEEeecccCCChHHHHHHHHhh
Confidence 5679999999999999999999865
No 12
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=7.5e-32 Score=186.20 Aligned_cols=161 Identities=32% Similarity=0.625 Sum_probs=133.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
...++|+++|++|||||||++++.+..+ ....+|.+.....+..+...+.+||+||++.+...+..+++.+|++++|+|
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVD 90 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 5678999999999999999999997754 356677777666677778899999999999999899999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+.++.++.....++..++......++|+++|+||+|+.+....+++.............++++++||++|.|++++++++
T Consensus 91 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 91 SSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 99998888888888877655444679999999999997655555655555443334456789999999999999999998
Q ss_pred HH
Q 030008 177 VK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 171 ~~ 172 (173)
T cd04154 171 VD 172 (173)
T ss_pred hc
Confidence 64
No 13
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=9.4e-32 Score=185.05 Aligned_cols=161 Identities=30% Similarity=0.573 Sum_probs=132.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 100 (184)
||+++|++|||||||++++.+..+. .+.||.+.....+...+..+.+||+||++++...+..+++.+|++++|+|++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~ 79 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHR 79 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcH
Confidence 5899999999999999999987665 467888877777778889999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc-cCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 101 DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI-TDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
+++.....++..+.......+.|+++|+||+|+......++..+....... ....+.+++|||++|.|++++|++|.+.
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 80 DRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred HHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 999999999988876544456899999999999765555555444432211 1223568899999999999999999987
Q ss_pred hhc
Q 030008 180 SKS 182 (184)
Q Consensus 180 l~~ 182 (184)
+.+
T Consensus 160 ~~~ 162 (169)
T cd04158 160 LVA 162 (169)
T ss_pred Hhh
Confidence 654
No 14
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.8e-32 Score=189.06 Aligned_cols=160 Identities=17% Similarity=0.257 Sum_probs=126.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
.++|+++|.+|+|||||++++..+.+...+.+|.+..+. .+. .....+.+||+||++++..++..+++.++++++|+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 479999999999999999999999998778888874443 233 33467999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++++..+..|+..+.......++|+++|+||+|+.+.... .+... ...+..++++++|||++|.||+++|+
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~----~~a~~~~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGR----NLAREFNCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHH----HHHHHhCCEEEEEecCCCCCHHHHHH
Confidence 99999999999877665544333357999999999998643211 11111 11223456899999999999999999
Q ss_pred HHHHhhhc
Q 030008 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~l~~ 182 (184)
.|.+.+.+
T Consensus 158 ~l~~~~~~ 165 (172)
T cd04141 158 GLVREIRR 165 (172)
T ss_pred HHHHHHHH
Confidence 99987654
No 15
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=1.8e-31 Score=182.25 Aligned_cols=158 Identities=33% Similarity=0.679 Sum_probs=127.9
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC-CCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
+|+++|++|||||||++++.+.. ....+.||.+.....+..+...+.+||+||++++...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 58999999999999999999865 34567788887666677778899999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHH
Q 030008 100 PDNLSISRSELHDLLNKP--SLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 177 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
+.++.....++..+.... ...++|+++|+||+|+.+.....++.............++++++||++|.|+++++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 988887777777765542 224799999999999976555555555544332233345789999999999999999986
Q ss_pred H
Q 030008 178 K 178 (184)
Q Consensus 178 ~ 178 (184)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 4
No 16
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=4.8e-32 Score=190.62 Aligned_cols=159 Identities=22% Similarity=0.343 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+.|+++|+.|+|||||++++..+.+...+.+|++..+ ..+..+ ...+.+|||+|++++..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4689999999999999999999999888888887443 334444 378899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|++++++|..+..|+..+... ...+.|+++|+||+|+.+.... .+....+.. ...++.+++|||++|.||+++|+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~---~~~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQ---QITGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH---hcCCCEEEEecCCCCCCHHHHHH
Confidence 999999999998887765433 3357999999999998642221 111111110 11235799999999999999999
Q ss_pred HHHHhhhc
Q 030008 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~l~~ 182 (184)
+|.+.+.+
T Consensus 157 ~l~~~~~~ 164 (202)
T cd04120 157 KLVDDILK 164 (202)
T ss_pred HHHHHHHH
Confidence 99987643
No 17
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=3e-31 Score=180.62 Aligned_cols=157 Identities=40% Similarity=0.746 Sum_probs=127.1
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 100 (184)
||+++|++++|||||++++..+.+. ...+|.+.....+...+..+.+||+||++.+...+..+++.++++++|+|++++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 79 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDR 79 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 6899999999999999999877665 356777776666777788999999999999999999999999999999999998
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 101 DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
.++.....++..++......++|+++|+||+|+.......++...+..........+++++||++|.|++++++.|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 80 DRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 777766666666655433457999999999999755445555555544333344568999999999999999999865
No 18
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=2.1e-31 Score=184.05 Aligned_cols=171 Identities=36% Similarity=0.754 Sum_probs=150.0
Q ss_pred HHHHhhcc-cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhcc
Q 030008 9 NWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA 87 (184)
Q Consensus 9 ~~~~~~~~-~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 87 (184)
..+++... +++++|+++|..||||||+++++..+... ...||.+.....+...+..+.+||.+|+..++..|..++++
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~ 81 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQN 81 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTT
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeeeCcEEEEEEeccccccccccceeeccc
Confidence 34455554 78999999999999999999999876544 47889999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCccc-CcceeEEEeeecCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSIT-DREVCCFMISCKNS 166 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 166 (184)
+++++||+|+++.+.+......+..++......++|+++++||.|+.+....+++...+...... ...+.++.|||.+|
T Consensus 82 ~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 82 ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTG 161 (175)
T ss_dssp ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence 99999999999999899999999998887666789999999999998877888888777765554 56788999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030008 167 TNIDSVIDWLVKHS 180 (184)
Q Consensus 167 ~~v~~l~~~i~~~l 180 (184)
+|+++.+++|.+.+
T Consensus 162 ~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 162 EGVDEGLEWLIEQI 175 (175)
T ss_dssp BTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcC
Confidence 99999999998764
No 19
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=4.9e-32 Score=188.94 Aligned_cols=159 Identities=18% Similarity=0.315 Sum_probs=127.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...+||+++|+.|+|||||++++..+.+...+.+|.+..+ ..+..+ .+.+.+||++|++++..++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4569999999999999999999998888766666666443 233333 478999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|||++++++|..+..|+..+.... ...|+++|+||+|+.+.. ..++ .+.+ ....++++++|||++|.||+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~-~~~~----a~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQ-AQAY----AERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHH-HHHH----HHHcCCEEEEecCCCCCCHH
Confidence 9999999999999999988886543 579999999999986421 2222 1111 12234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++|+.|.+.+..
T Consensus 157 ~~F~~l~~~i~~ 168 (189)
T cd04121 157 ESFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 20
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=1.2e-30 Score=182.81 Aligned_cols=175 Identities=34% Similarity=0.615 Sum_probs=140.4
Q ss_pred hHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHH
Q 030008 3 LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 82 (184)
|+.++++.+... .+..+|+++|++|||||||++++.++.+. .+.+|.+.....+..++..+.+||+||++.+...+.
T Consensus 5 ~~~~~~~~~~~~--~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~ 81 (190)
T cd00879 5 WFYNVLSSLGLY--NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWK 81 (190)
T ss_pred HHHHHHHHhhcc--cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 445555544322 56899999999999999999999987764 566777777777777888999999999999988889
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc-----------
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI----------- 151 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----------- 151 (184)
.+++.++++++|+|+.+.+++.....++..++......+.|+++++||+|+......++.....+....
T Consensus 82 ~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T cd00879 82 DYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVS 161 (190)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccccccccc
Confidence 999999999999999998888888888888876555567999999999999765566666655543221
Q ss_pred cCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 152 TDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
....+++++|||++|+|++++|++|.+.+
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 162 GIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred CceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 12346799999999999999999998753
No 21
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=4.9e-32 Score=188.03 Aligned_cols=164 Identities=18% Similarity=0.297 Sum_probs=126.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EE--EeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+..+||+++|++|+|||||++++..+.+...+.||.+..+. .+ ......+.+|||+|++++..+...+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 46789999999999999999999999998888888875443 23 3344789999999999999999999999999999
Q ss_pred EEeCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---------HHHHhHhCcCcccCcc-eeEEEee
Q 030008 94 VVDAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---------QALTDEMGLKSITDRE-VCCFMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~S 162 (184)
|||++++++|..+ ..|+..+.... +..|+++|+||+|+.+.... ..+........++..+ ++|++||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999997 67776665432 46899999999998532100 0011111122223344 3799999
Q ss_pred ecCCCC-HHHHHHHHHHhhhc
Q 030008 163 CKNSTN-IDSVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~-v~~l~~~i~~~l~~ 182 (184)
|++|.| |+++|+.+...+.+
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 161 ALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHhc
Confidence 999998 99999999886544
No 22
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.5e-31 Score=185.80 Aligned_cols=161 Identities=21% Similarity=0.375 Sum_probs=128.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EEe------------CcEEEEEEecCCchhhHHhHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTK------------GNVTIKLWDLGGQPRFRSMWER 83 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~~------------~~~~~~~~D~~G~~~~~~~~~~ 83 (184)
+.+||+++|++|||||||++++.++.+...+.+|.+..... +.. ....+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 56899999999999999999999999988888888754432 222 2478999999999999999999
Q ss_pred HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEe
Q 030008 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++++|++++|+|+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++. ..+. ...+.+++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA-KALA----DKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH-HHHH----HHcCCeEEEE
Confidence 999999999999999999999999888877655444578999999999986432 22221 1111 1123479999
Q ss_pred eecCCCCHHHHHHHHHHhhhcC
Q 030008 162 SCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
||++|.|++++++.|.+.+.++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999876543
No 23
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=9e-32 Score=184.22 Aligned_cols=158 Identities=20% Similarity=0.314 Sum_probs=125.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
++||+++|++|+|||||+++++.+.+...+.+|.+.... .+..+ ...+.+|||||++++...+..+++++|++++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 479999999999999999999988887777777764322 33333 466789999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++..+..|+..+.......+.|+++|+||+|+.+... .++. ..+ .....++++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNL----ARQWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHH----HHHhCCEEEEeeCCCCCCHHHHH
Confidence 9999999999988888887654456799999999999964322 1111 111 11123579999999999999999
Q ss_pred HHHHHhhh
Q 030008 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~l~ 181 (184)
++|.+.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 24
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.3e-32 Score=177.93 Aligned_cols=162 Identities=25% Similarity=0.396 Sum_probs=141.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE----EEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+||+++|..|+|||||+.+|..+.+.+....|++..+. .++...+++.+|||+|+++++.+.+++++.+.++|+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl 89 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL 89 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence 4589999999999999999999999999888888995543 344556889999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|||++.+++|.++..|+.++-.+....++-.++|+||+|..+ ...+.++.+..+++.+.+-++++||++.+||+.+|
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes---~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~F 166 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES---ERVVDREEGLKFARKHRCLFIECSAKTRENVQCCF 166 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh---cccccHHHHHHHHHhhCcEEEEcchhhhccHHHHH
Confidence 999999999999999999998888888888999999999763 34445555666666777789999999999999999
Q ss_pred HHHHHhhhc
Q 030008 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~l~~ 182 (184)
+.++..+.+
T Consensus 167 eelveKIi~ 175 (209)
T KOG0080|consen 167 EELVEKIIE 175 (209)
T ss_pred HHHHHHHhc
Confidence 999988764
No 25
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=8.6e-32 Score=183.54 Aligned_cols=163 Identities=23% Similarity=0.396 Sum_probs=138.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...++|+++|+++||||+++.+|..+.+...+..|+++.+.. +. .....+++|||+||++++..+..|++++++++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 567999999999999999999999999999999999976554 33 34478999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|||+++..+|+++..|+..+-.+. ...+|.++|+||+|+.+ ...+..+.++..+...+++++++||++|.||++.
T Consensus 90 LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~---~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 90 LVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEE---KRQVSKERGEALAREYGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred EEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeeccccccc---cccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence 9999999999999999888775554 35899999999999975 3334444444555556778999999999999999
Q ss_pred HHHHHHhhhcC
Q 030008 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~l~~~ 183 (184)
|-.|.+.+.++
T Consensus 166 F~~La~~i~~k 176 (207)
T KOG0078|consen 166 FLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHhh
Confidence 99999887643
No 26
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.98 E-value=1.2e-31 Score=183.32 Aligned_cols=158 Identities=18% Similarity=0.305 Sum_probs=123.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee-EEEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN-MRKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
++||+++|++|||||||++++.++.+...+.+|.+.. ...+..+ ...+.+|||||++++...+..++++++++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 3799999999999999999999888877777776632 2233333 366789999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++++.....|+..+.......+.|+++|+||+|+.+.... .+....+. ...+.+++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA----RQWGCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999888887766544467999999999998643221 11111111 11225799999999999999999
Q ss_pred HHHHhh
Q 030008 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~l 180 (184)
.|.+.+
T Consensus 157 ~l~~~~ 162 (163)
T cd04136 157 DLVRQI 162 (163)
T ss_pred HHHHhc
Confidence 998765
No 27
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.98 E-value=6.9e-31 Score=179.84 Aligned_cols=156 Identities=32% Similarity=0.596 Sum_probs=130.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 100 (184)
.|+++|++|+|||||++++.++.+...+.||.+.....+...+..+.+||+||+++++..+..+++++|++++|+|++++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 37999999999999999999888877788888877666777889999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC-cccCcceeEEEeeecC------CCCHHHHH
Q 030008 101 DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK-SITDREVCCFMISCKN------STNIDSVI 173 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~------~~~v~~l~ 173 (184)
.++.....++..+.... .++|+++|+||+|+.......++....... ......++++++||++ ++||+++|
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence 88888888888776443 579999999999997665555554444332 2244567889999988 99999999
Q ss_pred HHHHH
Q 030008 174 DWLVK 178 (184)
Q Consensus 174 ~~i~~ 178 (184)
+.++.
T Consensus 159 ~~~~~ 163 (164)
T cd04162 159 SQLIN 163 (164)
T ss_pred HHHhc
Confidence 98864
No 28
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.98 E-value=1.3e-30 Score=177.45 Aligned_cols=157 Identities=37% Similarity=0.725 Sum_probs=134.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 100 (184)
||+++|++|||||||+++++++.. ....+|.+.....+......+.+||+||++.+...+..+++.++++++|+|++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~ 79 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDR 79 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 689999999999999999998774 4567788877777778889999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 101 DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
+++.....++..+.........|+++|+||+|+......+++.+...........++++++||++|.|++++++.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 80 ERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 889988888888777655568999999999999876666677766655444455678999999999999999999875
No 29
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.98 E-value=1.9e-31 Score=183.02 Aligned_cols=158 Identities=20% Similarity=0.293 Sum_probs=126.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
.+||+++|++|+|||||++++.++.+...+.+|.+.... .+.. ....+.+||+||++++...+..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 379999999999999999999999888777777765443 2333 346789999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+... ...+.|+++|+||+|+..... .++.... .+...++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQF-----ADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHH
Confidence 9999999999999888876543 235689999999999864322 2222211 1223457999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|..+.+.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999887754
No 30
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.98 E-value=2.2e-31 Score=183.75 Aligned_cols=161 Identities=20% Similarity=0.306 Sum_probs=124.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|+|||||+.++..+.+...+.+|++..+. .+. ...+++.+|||+|++++..+...++++++++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999998888899875443 222 344789999999999999999999999999999999
Q ss_pred CCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-------HHHHHhHhCcCcccCcce-eEEEeeecCCC
Q 030008 97 AADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-------KQALTDEMGLKSITDREV-CCFMISCKNST 167 (184)
Q Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 167 (184)
++++++|..+ ..|+..+.... .+.|+++|+||+|+.+... ...+..+......+..+. ++++|||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 56777765433 4699999999999954311 000111111111222333 59999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030008 168 NIDSVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~ 182 (184)
||+++|+.+.+.+.+
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987643
No 31
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.98 E-value=1.3e-30 Score=181.55 Aligned_cols=164 Identities=28% Similarity=0.544 Sum_probs=127.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE-----eCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+.++|+++|++|||||||++++..+.+... .||.+....... .....+.+|||||++++...+..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998777644 566664443332 24578999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc-cCcceeEEEeeecCCCCHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI-TDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|+++++++.....++..+.......++|+++|+||+|+......++.......... ....++++++||++|.|+++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 99999998888887777777665544457999999999998754444444443332211 22245689999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+++.|.+.+.+
T Consensus 161 l~~~l~~~l~~ 171 (183)
T cd04152 161 GLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 32
>PTZ00369 Ras-like protein; Provisional
Probab=99.98 E-value=1.4e-31 Score=187.36 Aligned_cols=161 Identities=19% Similarity=0.288 Sum_probs=128.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-E--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..++||+++|++|+|||||++++..+.+...+.+|.+..+. . +......+.+|||||++++..++..+++.++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 35799999999999999999999998887777788775443 2 33344678899999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+.......+.|+++|+||+|+.+.. ...+.... ....+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~-----~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQEL-----AKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH-----HHHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999888887765445678999999999985432 22111111 112235799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+|+.|.+.+.+
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 33
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.98 E-value=6.1e-31 Score=184.29 Aligned_cols=163 Identities=21% Similarity=0.306 Sum_probs=125.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE---EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.+||+++|+.|+|||||++++..+.+...+.||.+..+.. +....+.+.+|||+|++++..++..+++++|++++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 45899999999999999999999999988888888754432 333447899999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHh--------HhCcCcccCcc-eeEEEeee
Q 030008 95 VDAADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTD--------EMGLKSITDRE-VCCFMISC 163 (184)
Q Consensus 95 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~~~Sa 163 (184)
||++++++|..+.. |...+.... .+.|+++|+||.|+.+.... +.+.. ..........+ +++++|||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999974 555554322 47999999999999643221 11111 00011112223 57999999
Q ss_pred cCCCCHHHHHHHHHHhhhc
Q 030008 164 KNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~ 182 (184)
++|.||+++|+.+.+.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987643
No 34
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.98 E-value=2.2e-30 Score=177.86 Aligned_cols=157 Identities=32% Similarity=0.556 Sum_probs=132.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 100 (184)
+|+++|++|||||||++++.++ +...+.||.+.....+..++..+.+||+||++.++..+..++++++++++|+|++++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~ 79 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDD 79 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCch
Confidence 4899999999999999999866 666778888887777888889999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc---cCcceeEEEeeecCC------CCHHH
Q 030008 101 DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI---TDREVCCFMISCKNS------TNIDS 171 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~------~~v~~ 171 (184)
+++.....++..+.......++|+++|+||+|+.......++......... ....+++++|||++| .|+++
T Consensus 80 ~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~ 159 (167)
T cd04161 80 DRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVE 159 (167)
T ss_pred hHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHH
Confidence 899999888888876654467999999999999876666666666554332 123567888999998 89999
Q ss_pred HHHHHHH
Q 030008 172 VIDWLVK 178 (184)
Q Consensus 172 l~~~i~~ 178 (184)
.+++|..
T Consensus 160 ~~~wl~~ 166 (167)
T cd04161 160 GLRWLLA 166 (167)
T ss_pred HHHHHhc
Confidence 9999875
No 35
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.98 E-value=6.3e-31 Score=179.34 Aligned_cols=157 Identities=17% Similarity=0.281 Sum_probs=124.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
++||+++|++|||||||++++.++.+...+.+|.+..+. .+..+ ...+.+||+||++++..++..+++.++++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 368999999999999999999988887777777764332 23333 356889999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+.+.+++..+..|+..+.......+.|+++|+||+|+.+.... .+..... ...+++++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHH
Confidence 99999899988888887766554567999999999998653221 2211111 12244799999999999999999
Q ss_pred HHHHhh
Q 030008 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~l 180 (184)
.|.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998765
No 36
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.98 E-value=9.1e-31 Score=179.61 Aligned_cols=156 Identities=22% Similarity=0.405 Sum_probs=126.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE----eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++..+.+...+.+|.+....... .....+.+|||||++.+......++..+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988887778888876554432 23478999999999998888888999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|+++++++..+..|+..+..... ++|+++|+||+|+.......+..+ ......++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQIT-----FHRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHHH-----HHHHcCCEEEEEeCCCCCChHHHHHH
Confidence 99999999999888888765542 799999999999964332222111 11234567999999999999999999
Q ss_pred HHHhhhc
Q 030008 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~l~~ 182 (184)
|.+.+.+
T Consensus 154 l~~~~~~ 160 (166)
T cd00877 154 LARKLLG 160 (166)
T ss_pred HHHHHHh
Confidence 9988764
No 37
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.98 E-value=4.5e-31 Score=181.76 Aligned_cols=158 Identities=22% Similarity=0.362 Sum_probs=125.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
||+++|++|||||||++++.++.+...+.+|.+..+. .+.. ....+.+||+||++++......+++++|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999999998888898875543 2332 34679999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---QALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+++++++..+..|+..+.........|+++|+||+|+.+.... ++..... ....+.+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL----AAEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH----HHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999988888765543345789999999998643221 1111111 11223468999999999999999
Q ss_pred HHHHHhhhc
Q 030008 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~l~~ 182 (184)
+.|.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999988754
No 38
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=3e-31 Score=183.40 Aligned_cols=159 Identities=19% Similarity=0.262 Sum_probs=121.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|+|||||++++.++.+...+.||.+..+. .+..++ +.+.+||++|++++...+..+++++|++++|+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 68999999999999999999999998888888875443 333333 778999999999999888889999999999999
Q ss_pred CCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhH---------hCcCcccCc-ceeEEEeeecC
Q 030008 97 AADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDE---------MGLKSITDR-EVCCFMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~Sa~~ 165 (184)
+++++++..+.. |...+.... .++|+++|+||+|+.+.....+.... ......+.. .+++++|||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999875 555553322 46899999999998643221110000 000011112 35799999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030008 166 STNIDSVIDWLVKHS 180 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l 180 (184)
|.|++++|+.++...
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999988753
No 39
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=3.9e-31 Score=181.02 Aligned_cols=158 Identities=20% Similarity=0.319 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|||||||++++.++.+...+.+|...... .+. .....+.+|||||++++...+..+++.++++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999988887766666663322 222 334678899999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+.+++++..+..|+..+.........|+++|+||+|+.+.. ..+...... .....+++++||++|.|++++++
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHH
Confidence 99999999998888777655444578999999999986432 112111111 11235799999999999999999
Q ss_pred HHHHhhhc
Q 030008 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~l~~ 182 (184)
.|.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99988764
No 40
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=7.6e-31 Score=181.67 Aligned_cols=161 Identities=20% Similarity=0.289 Sum_probs=123.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EE--EeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
.+||+++|++|+|||||++++.++.+...+.||.+..+. .+ ......+.+|||+|++.+......++++++++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 378999999999999999999999998888888875443 22 334477999999999999998899999999999999
Q ss_pred eCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-H--------HHHHhHhCcCcccCcce-eEEEeeec
Q 030008 96 DAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-K--------QALTDEMGLKSITDREV-CCFMISCK 164 (184)
Q Consensus 96 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~--------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 164 (184)
|++++++|..+ ..|+..+.... ...|+++|+||+|+.+... . ..+.........+..++ ++++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 67776665433 4789999999999853110 0 00111111122223343 69999999
Q ss_pred CCCC-HHHHHHHHHHhhh
Q 030008 165 NSTN-IDSVIDWLVKHSK 181 (184)
Q Consensus 165 ~~~~-v~~l~~~i~~~l~ 181 (184)
+|+| |+++|..+.+...
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999988644
No 41
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2.4e-30 Score=182.68 Aligned_cols=159 Identities=28% Similarity=0.408 Sum_probs=125.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEe---CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+||+++|++|+|||||++++.++.+...+.+|.+..+ ..+.. ....+.+|||||++++...+..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999888888888887543 23333 357899999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcC---CCCCCCcEEEEeeCCCCCC--CCCHHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 95 VDAADPDNLSISRSELHDLLNK---PSLSGIPLLVLGNKIDKPG--ALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
+|+++++++..+..|+..+... .....+|+++|+||+|+.+ ....++..+..... ...+++++||++|.|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~e~Sak~~~~v 156 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----GFIGWFETSAKEGINI 156 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----CCceEEEEeCCCCCCH
Confidence 9999999999998877665432 1235689999999999963 22333322222111 1146999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030008 170 DSVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~l~~ 182 (184)
+++|+.|.+.+.+
T Consensus 157 ~e~f~~l~~~l~~ 169 (201)
T cd04107 157 EEAMRFLVKNILA 169 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
No 42
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=4.4e-31 Score=180.66 Aligned_cols=159 Identities=19% Similarity=0.268 Sum_probs=124.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.+||+++|++|+|||||++++++..+.....+|.+..+. .... ....+.+|||||++++...+..+++.+|++++|
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 3589999999999999999999988776666666663322 2223 336788999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+|+++++++..+..|+..+.......+.|+++|+||+|+...... .+....+ ....+++++++||++|.|++++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQEL----ARKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHH----HHHcCCcEEEeeCCCCCCHHHHH
Confidence 999999999999888888766544567899999999998643221 1111111 11234579999999999999999
Q ss_pred HHHHHhh
Q 030008 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~l 180 (184)
+.|.+.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998765
No 43
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=4.9e-31 Score=180.91 Aligned_cols=157 Identities=18% Similarity=0.337 Sum_probs=125.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|+|||||+++++++.+...+.+|.+..+. .+. .....+.+|||||++.+...+..++++++++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888888875543 333 34578999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCC----CCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSL----SGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
|+++++++..+..|+..+...... ...|+++|+||+|+.+.. ..++..... ...+.+++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-----ESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 999999999988888877655432 568999999999986321 222221111 112357999999999999
Q ss_pred HHHHHHHHHhhh
Q 030008 170 DSVIDWLVKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~l~ 181 (184)
+++++.|.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 44
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.97 E-value=2.9e-30 Score=177.18 Aligned_cols=158 Identities=37% Similarity=0.687 Sum_probs=128.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC------CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+|+++|++|+|||||++++.+... ...+.+|.+.....+..++..+.+||+||++.+...+..++..++++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999985322 33456777777777788889999999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCc--ccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS--ITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+.+++++.....++..+.......++|+++|+||+|+.......+....+.... .....++++++||++|.|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888888888888877655556799999999999876555555544444322 1224568999999999999999
Q ss_pred HHHHHH
Q 030008 173 IDWLVK 178 (184)
Q Consensus 173 ~~~i~~ 178 (184)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999864
No 45
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=8.7e-31 Score=179.57 Aligned_cols=158 Identities=22% Similarity=0.376 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++.++.+...+.+|.+..+. .+.. ....+.+||+||++++...+..++++++++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 68999999999999999999999887777788774432 2322 3478999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++..+..|+..+.... ....|+++|+||+|+.+... .++..+.. ...+++++++||++|.|+++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999988888765432 34689999999999964322 12111111 1223479999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+.|.+.+.++
T Consensus 156 ~~l~~~~~~~ 165 (165)
T cd01865 156 ERLVDIICDK 165 (165)
T ss_pred HHHHHHHHhC
Confidence 9999887653
No 46
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=7.3e-32 Score=179.36 Aligned_cols=159 Identities=27% Similarity=0.459 Sum_probs=132.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--E--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+.-+||.++|++|+|||||++++.++++...+..|++.... . ++...+.+++|||+|++++.++-..+++.+|+++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 45689999999999999999999999999999999994332 2 3444578999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCC---CCcEEEEeeCCCCCCCCC-------HHHHHhHhCcCcccCcceeEEEee
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLS---GIPLLVLGNKIDKPGALS-------KQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iiv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
+|||++++++|+.+..|-.+++.+.... .-|+|+++||+|+..... .+++++.. ..+|||++|
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~-------gnipyfEtS 159 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK-------GNIPYFETS 159 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhc-------CCceeEEec
Confidence 9999999999999999999998875533 359999999999965321 23333333 345899999
Q ss_pred ecCCCCHHHHHHHHHHhhhc
Q 030008 163 CKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~~ 182 (184)
|+.+.||++.|+.+...+..
T Consensus 160 AK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 160 AKEATNVDEAFEEIARRALA 179 (210)
T ss_pred ccccccHHHHHHHHHHHHHh
Confidence 99999999999998876543
No 47
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=6.8e-31 Score=186.76 Aligned_cols=160 Identities=24% Similarity=0.418 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
+||+++|.+|+|||||++++..+.+.. ..+|++..........+.+.+|||||++.+......++++++++++|||+++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~ 79 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN 79 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCC
Confidence 589999999999999999999988864 5778876655555667889999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC---------------------CCHH---HHHhHhCc------C
Q 030008 100 PDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA---------------------LSKQ---ALTDEMGL------K 149 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~---------------------~~~~---~~~~~~~~------~ 149 (184)
+++|..+..|+..+... .....|+++|+||+|+.+. ...+ .+.+.... .
T Consensus 80 ~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~ 158 (220)
T cd04126 80 VQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDED 158 (220)
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccccc
Confidence 99999998888877653 2356899999999998641 0011 22222110 0
Q ss_pred cccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 150 SITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.....+.+|++|||++|.||+++|..+.+.+.
T Consensus 159 ~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 159 LSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 01112357999999999999999999987754
No 48
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=7.1e-31 Score=180.33 Aligned_cols=160 Identities=23% Similarity=0.390 Sum_probs=127.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+||+++|++|+|||||++++.+..+...+.+|.+.... .+... ...+.+||+||++.+......+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 3589999999999999999999999988888888875443 33333 3678999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..++..... ...+.+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999999998888877553 23578999999999997432 222222111 12345799999999999999
Q ss_pred HHHHHHHhhhcC
Q 030008 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~l~~~ 183 (184)
+|+.+.+.+.++
T Consensus 156 ~~~~i~~~~~~~ 167 (167)
T cd01867 156 AFFTLAKDIKKK 167 (167)
T ss_pred HHHHHHHHHHhC
Confidence 999999887643
No 49
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=4.2e-31 Score=180.72 Aligned_cols=158 Identities=16% Similarity=0.294 Sum_probs=123.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee-EEEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN-MRKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+++|+++|++|+|||||++++..+.+...+.+|.+.. ...+..+ ...+.+|||||++++..++..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 4799999999999999999999998887777776522 2233333 356889999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-HHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ-ALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++++..+..|+..+.......++|+++|+||+|+....... .....+. ...+.+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALA----EEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHH----HHhCCEEEEecCCCCCCHHHHHH
Confidence 999999999998888877665444679999999999986432211 1111111 12235799999999999999999
Q ss_pred HHHHhh
Q 030008 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~l 180 (184)
.+.+.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998765
No 50
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=1.8e-30 Score=180.45 Aligned_cols=160 Identities=24% Similarity=0.425 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|+.|+|||||++++.++.+...+.+|.+..+. .+..+ ...+.+||++|++++...+..++++++++++|+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888899886542 34433 478999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS---KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+++++++..+..|+..+..... ...| ++|+||+|+..... ..... ..........+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999888887765422 3466 67899999853211 11111 1111112223467999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|+.+.+.+.+
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 51
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=6.1e-31 Score=188.04 Aligned_cols=163 Identities=21% Similarity=0.327 Sum_probs=125.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-E--EeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-V--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
..++|+++|++|+|||||++++..+.+...+.||++..+.. + ....+.+.+|||+|++.+......++++++++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 46899999999999999999999999988888888754432 2 23457899999999999999999999999999999
Q ss_pred EeCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---------HHHHHhHhCcCcccCcce-eEEEeee
Q 030008 95 VDAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGALS---------KQALTDEMGLKSITDREV-CCFMISC 163 (184)
Q Consensus 95 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa 163 (184)
||++++++|... ..|+..+.... ...|+++|+||+|+.+... ...+............++ +|++|||
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 999999999985 67777665432 4689999999999853210 001111111222233444 5899999
Q ss_pred cCCC-CHHHHHHHHHHhhhc
Q 030008 164 KNST-NIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~-~v~~l~~~i~~~l~~ 182 (184)
++|+ ||+++|+.+...+.+
T Consensus 170 ktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHH
Confidence 9998 899999999877644
No 52
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1.5e-30 Score=185.67 Aligned_cols=158 Identities=20% Similarity=0.360 Sum_probs=129.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE----eCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...+||+++|++|||||||+++++.+.+...+.+|++....... .....+.+|||+|++++...+..+++.++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56799999999999999999999999998888899886554432 24478999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+..... .++. .+ .....+++++|||++|.|+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~--~~----~~~~~~~~~e~SAk~~~~i~~ 162 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV--TF----HRKKNLQYYEISAKSNYNFEK 162 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH--HH----HHhcCCEEEEcCCCCCCCHHH
Confidence 9999999999999998888876543 4699999999999864322 2222 11 122346799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+|++|.+.+.+
T Consensus 163 ~f~~l~~~~~~ 173 (219)
T PLN03071 163 PFLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHHc
Confidence 99999987754
No 53
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=1.1e-30 Score=179.23 Aligned_cols=158 Identities=25% Similarity=0.428 Sum_probs=125.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
.+||+++|++|||||||++++.++.+...+.+|.+... ..+... ...+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999888777777776433 233333 36789999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+.... ..+.|+++|+||+|+..... .++... +. ...+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQE-FA----DELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHH-HH----HHcCCeEEEEECCCCcCHHHH
Confidence 99999999999998888775432 34689999999999854322 122111 11 123457999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
++.|.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 54
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.97 E-value=1e-29 Score=172.59 Aligned_cols=157 Identities=74% Similarity=1.216 Sum_probs=132.5
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 101 (184)
|+++|++|||||||++++.+..+.....+|.+.....+..+...+.+||+||++.+...+..++..+|++++|+|+++.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 78999999999999999999988888889998887777777889999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 102 NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
++.....++..+........+|+++|+||+|+.+.....+..............++++++|+++|.|++++++.|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88777777777766544467899999999998765555555555544433444568999999999999999999875
No 55
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=6.1e-31 Score=184.22 Aligned_cols=158 Identities=17% Similarity=0.267 Sum_probs=123.1
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 97 (184)
+|+++|++|+|||||++++..+.+...+.+|.+..+. .+..+ ...+.+|||||++++...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 5899999999999999999988887777777764332 23333 35688999999999999999999999999999999
Q ss_pred CCcCcHHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 98 ADPDNLSISRSELHDLLNKPS--LSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
++++++..+..|+..+..... ..+.|+++|+||+|+.+... ..+. ..+ ....+++++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEG-AAL----ARRLGCEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHH-HHH----HHHhCCEEEEecCCCCCCHHHHH
Confidence 999999999888877654322 25689999999999864222 1111 111 12223579999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+.+.+.+.++
T Consensus 156 ~~l~~~l~~~ 165 (190)
T cd04144 156 YTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHh
Confidence 9999887643
No 56
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=1.1e-30 Score=178.43 Aligned_cols=155 Identities=22% Similarity=0.377 Sum_probs=123.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
++|+++|++|+|||||++++.++.+...+.+|.+.... .+... ...+.+||++|++++......+++++|++++|+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888885443 34433 367899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++++..+..|+..+.... ....|+++|+||.|+.+.... .+....+ .+....+++++||++|.|++++|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKL----AKEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHH----HHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999998888775442 346899999999998643221 1111111 112235799999999999999999
Q ss_pred HHHHh
Q 030008 175 WLVKH 179 (184)
Q Consensus 175 ~i~~~ 179 (184)
.|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99865
No 57
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.97 E-value=7.2e-30 Score=174.03 Aligned_cols=157 Identities=32% Similarity=0.607 Sum_probs=126.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEe-CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
+|+++|++|||||||++++.++.+.. ..+|.+.....+.. ....+.+||+||++.+...+..++..+|++++|+|+.+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~ 79 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSD 79 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc
Confidence 58999999999999999999887753 46777765555543 34789999999999999889999999999999999999
Q ss_pred cCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC-cccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 100 PDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK-SITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
+.++.....++..++......+.|+++|+||+|+......+++....... ......+++++|||++|+|++++++.|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 80 EARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 98888888888887765444579999999999997554555665554322 22234567999999999999999999864
No 58
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.2e-30 Score=185.31 Aligned_cols=160 Identities=21% Similarity=0.365 Sum_probs=127.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe---CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+||+++|++|+|||||++++.++.+.....+|.+.... .+.. ....+.+||+||++++......+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999998887777788775433 2322 24689999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+|+++++++..+..|+..+.........|+++|+||+|+...... .+....+ .+..+++++++||++|.|++++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sak~g~~v~e~ 157 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKL----AKDLGMKYIETSARTGDNVEEA 157 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHH----HHHhCCEEEEEeCCCCCCHHHH
Confidence 9999999999999998888765544456789999999998653221 1111111 1223367999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|+.|.+.+.+
T Consensus 158 f~~l~~~~~~ 167 (211)
T cd04111 158 FELLTQEIYE 167 (211)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 59
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.97 E-value=1.5e-29 Score=165.26 Aligned_cols=165 Identities=32% Similarity=0.618 Sum_probs=148.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+.+++|.++|..||||||++++|.+.. .+...||.++....+..+.+.+++||.+||...++.|.+|+.+.|++|+|+|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvD 92 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVD 92 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEE
Confidence 469999999999999999999998665 4578899999999999999999999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc-cCcceeEEEeeecCCCCHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI-TDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
..++..++.....+..++......+.|++++.||.|+...-..+++.....+... +...++++.||+.+|+++.+-+++
T Consensus 93 ssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidW 172 (185)
T KOG0073|consen 93 SSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDW 172 (185)
T ss_pred CchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHH
Confidence 9999999999888888887777778999999999999877788888877776555 778899999999999999999999
Q ss_pred HHHhhhc
Q 030008 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~l~~ 182 (184)
+.+.+.+
T Consensus 173 L~~~l~~ 179 (185)
T KOG0073|consen 173 LCDDLMS 179 (185)
T ss_pred HHHHHHH
Confidence 8887654
No 60
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.4e-30 Score=173.00 Aligned_cols=169 Identities=34% Similarity=0.691 Sum_probs=157.5
Q ss_pred hcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 14 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 14 ~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+-+++.+|+++|-.++||||+++++..++.... .||++++...+.+++..|++||.+|+++++..|..|+++.+++||
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIf 90 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIF 90 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEE
Confidence 4568999999999999999999999987776544 999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|.++++.+......+..++........|+++.+||.|+.......++.+.+.+.......+.+..|||.+|+|+.+-+
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl 170 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGL 170 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHH
Confidence 99999999999999999999888777789999999999999988999999999998888899999999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+++.+.+.++
T Consensus 171 ~wl~~~~~~~ 180 (181)
T KOG0070|consen 171 DWLSNNLKKR 180 (181)
T ss_pred HHHHHHHhcc
Confidence 9999988765
No 61
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=1.4e-30 Score=178.51 Aligned_cols=156 Identities=21% Similarity=0.296 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE---EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|+|||||+++++++.+...+.+|.+..+.. .......+.+|||||++++..+...+++.++++++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 789999999999999999999998877777777644432 22344778999999999999888889999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKP--SLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+++++++..+..|+..+.... ...+.|+++|+||+|+.+... ..+....+ .....++++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAAC----ATEWNCAFMETSAKTNHNVQELF 157 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHH----HHHhCCcEEEeecCCCCCHHHHH
Confidence 999999998887776543321 225689999999999964211 11111111 11223569999999999999999
Q ss_pred HHHHHh
Q 030008 174 DWLVKH 179 (184)
Q Consensus 174 ~~i~~~ 179 (184)
+.|...
T Consensus 158 ~~l~~~ 163 (165)
T cd04140 158 QELLNL 163 (165)
T ss_pred HHHHhc
Confidence 999754
No 62
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.97 E-value=3e-29 Score=173.07 Aligned_cols=161 Identities=31% Similarity=0.634 Sum_probs=134.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
.+.++|+++|++|||||||++++.+..+. ...+|.+.....+...+..+.+||+||+..+...+..+++.++++++|+|
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D 90 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVID 90 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEe
Confidence 56899999999999999999999976554 45677777777777778899999999999988888899999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+.+..++.....++..+........+|+++++||+|+.+....+++...++........++++++||++|+|+++++++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 91 SADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred CCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 99988887777777777665444579999999999997666666777766655444555678899999999999999998
Q ss_pred HH
Q 030008 177 VK 178 (184)
Q Consensus 177 ~~ 178 (184)
.+
T Consensus 171 ~~ 172 (173)
T cd04155 171 CK 172 (173)
T ss_pred hc
Confidence 75
No 63
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=3.3e-30 Score=183.70 Aligned_cols=159 Identities=21% Similarity=0.331 Sum_probs=124.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEe---CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+||+++|++|+|||||+++|.++.+...+.+|.+... ..+.. ....+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999988888888887553 23333 247899999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPS--LSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+++++++..+..|+..+..... ....|+++|+||+|+.+... ..+....+ ....+++++++||++|+|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~----~~~~~~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARF----AQANGMESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHH----HHHcCCEEEEEECCCCCCHHH
Confidence 999999999999888777655432 23578999999999963211 11111111 112235789999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+|+.|...+..
T Consensus 157 lf~~l~~~l~~ 167 (215)
T cd04109 157 LFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHh
Confidence 99999987753
No 64
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.8e-29 Score=173.05 Aligned_cols=158 Identities=23% Similarity=0.359 Sum_probs=123.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+.+||+++|++|+|||||++++..+.+.....+|.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999888877777777643 33444444 578999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+.+++++..+..|+..+... ...++|+++|+||+|+.+... .+...... . ......++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~---~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLA-E---KNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHH-H---HcCCcEEEEEECCCCCCHHH
Confidence 99999999999988888877543 235789999999999864322 11111111 1 11123689999999999999
Q ss_pred HHHHHHHhh
Q 030008 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~l 180 (184)
+++.|.+.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998753
No 65
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=4.9e-30 Score=175.18 Aligned_cols=157 Identities=22% Similarity=0.353 Sum_probs=122.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++.++.+.....++.+..... +......+.+|||||++++...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999988877666665543222 2334567899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|++++.++..+..|+..+.... ...|+++|+||+|+.... ..+. ..+ ....+++++++||++|.|++++++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~~-~~~~-~~~----~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPSV-TQKK-FNF----AEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchhH-HHHH-HHH----HHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999988888887775432 468999999999985321 1111 111 1122457999999999999999999
Q ss_pred HHHhhhcCC
Q 030008 176 LVKHSKSKS 184 (184)
Q Consensus 176 i~~~l~~~~ 184 (184)
+.+.+.+++
T Consensus 153 l~~~~~~~~ 161 (161)
T cd04124 153 AIKLAVSYK 161 (161)
T ss_pred HHHHHHhcC
Confidence 998877653
No 66
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=4.5e-30 Score=177.36 Aligned_cols=159 Identities=19% Similarity=0.317 Sum_probs=119.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-E--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
.+||+++|++|||||||+.++..+.+...+.+|.+..+. . +......+.+|||||++.+...+..+++++|++++||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 368999999999999999999998888788888764332 2 2233477899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhH--------hCcCcccCcc-eeEEEeeec
Q 030008 96 DAADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDE--------MGLKSITDRE-VCCFMISCK 164 (184)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~--------~~~~~~~~~~-~~~~~~Sa~ 164 (184)
|+++++++..+.. |+..+... ..+.|+++|+||+|+.+... .+..... .........+ .++++|||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999864 55554433 24799999999999854211 1111110 0000111122 479999999
Q ss_pred CCCCHHHHHHHHHHh
Q 030008 165 NSTNIDSVIDWLVKH 179 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~ 179 (184)
+|.|++++|+.+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
No 67
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=4.4e-30 Score=176.54 Aligned_cols=159 Identities=21% Similarity=0.299 Sum_probs=125.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..++|+++|++|+|||||++++.++.+.....+|.+... ..+. .....+.+||+||++++......+++++|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 348999999999999999999998887776667766433 2233 334679999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+.... .+..|+++|+||.|+.... ..++..... ...+++++++||+++.|+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~ 156 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEE 156 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999998888775542 3579999999999986422 222222211 12345799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+|+.+.+.+.+
T Consensus 157 ~~~~~~~~~~~ 167 (168)
T cd01866 157 AFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 68
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.3e-31 Score=174.47 Aligned_cols=160 Identities=19% Similarity=0.302 Sum_probs=135.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--E--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...+|++++|+.|+|||+|+.+++.+.+.+....|++..+. . ++....++++|||+|++.+++...++++.+.+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 35689999999999999999999999999999999996543 2 4556688999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|||+++.++|..+..|+.++..+. ..+.-+++++||+|+... +++.++.++..++.++..+.++||++++||++.
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~r---R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEAR---REVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhcc---ccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 9999999999999999999987653 578999999999999643 234444444555556667899999999999999
Q ss_pred HHHHHHhh
Q 030008 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~l 180 (184)
|......+
T Consensus 160 F~nta~~I 167 (216)
T KOG0098|consen 160 FINTAKEI 167 (216)
T ss_pred HHHHHHHH
Confidence 98876654
No 69
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=1.3e-29 Score=174.48 Aligned_cols=159 Identities=23% Similarity=0.386 Sum_probs=124.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EE--EeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..++|+++|++|||||||++++.++.+.....+|.+.... .+ ......+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 35689999999999999999999998888777777775432 23 334467899999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCC---CCCCcEEEEeeCCCCCCCC-CHHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPS---LSGIPLLVLGNKIDKPGAL-SKQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|+++++++..+..|...+..... ....|+++|+||+|+.... ..++..+... .....+++++||++|.|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDATN 158 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCCC
Confidence 99999999999999888877655432 2468999999999986432 2222222211 11224799999999999
Q ss_pred HHHHHHHHHHh
Q 030008 169 IDSVIDWLVKH 179 (184)
Q Consensus 169 v~~l~~~i~~~ 179 (184)
++++|+.+.+.
T Consensus 159 v~~~~~~~~~~ 169 (170)
T cd04116 159 VAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999865
No 70
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=6.2e-30 Score=173.96 Aligned_cols=152 Identities=19% Similarity=0.328 Sum_probs=114.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 97 (184)
++|+++|++|+|||||++++..+.+.....|+.+.....+..++ ..+.+||++|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 48999999999999999999988877665555443334444444 6789999999875 2456789999999999
Q ss_pred CCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC---CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 98 ADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA---LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+++++|..+..|+..+.........|+++|+||.|+... ....+..+.+.. ....++|++|||++|.||+++|+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~---~~~~~~~~e~SAk~~~~i~~~f~ 152 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCA---DMKRCSYYETCATYGLNVERVFQ 152 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHH---HhCCCcEEEEecCCCCCHHHHHH
Confidence 999999999888888876554467899999999997421 111111111111 11236799999999999999999
Q ss_pred HHHHh
Q 030008 175 WLVKH 179 (184)
Q Consensus 175 ~i~~~ 179 (184)
.+.+.
T Consensus 153 ~~~~~ 157 (158)
T cd04103 153 EAAQK 157 (158)
T ss_pred HHHhh
Confidence 99865
No 71
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=5.9e-30 Score=174.78 Aligned_cols=153 Identities=21% Similarity=0.397 Sum_probs=121.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EE----eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+||+++|++|+|||||++++.++.+.....+|.+..+.. +. ....++.+||+||++++...+..++++++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999988877777887755432 32 335789999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+.+++++..+..|...+.... .+.|+++|+||+|+..... .++..... ...+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHH
Confidence 999999999999888887764332 4789999999999865322 22221111 11234799999999999999
Q ss_pred HHHHHHHh
Q 030008 172 VIDWLVKH 179 (184)
Q Consensus 172 l~~~i~~~ 179 (184)
+++.|...
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99998764
No 72
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=7.7e-30 Score=179.81 Aligned_cols=159 Identities=22% Similarity=0.391 Sum_probs=126.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..++|+++|++|+|||||++++.+..+...+.+|.+..+. .+... ...+.+||+||++.+...+..+++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35789999999999999999999998887777888875433 33333 367899999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--HHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK--QALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ...|+++|+||+|+.+.... ++..... ...+++++++||++|.||+
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~ 156 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVE 156 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHH
Confidence 9999999999999988888775432 46899999999998654221 2211111 1123579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++|+.|.+.+..
T Consensus 157 ~lf~~l~~~~~~ 168 (199)
T cd04110 157 EMFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
No 73
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=6.7e-30 Score=175.98 Aligned_cols=159 Identities=26% Similarity=0.450 Sum_probs=124.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhH-HhHHHHhccCCEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFR-SMWERYCRAVSAIVY 93 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~-~~~~~~~~~~~~ii~ 93 (184)
.++|+++|++|+|||||+++++...+.....+|.+.... .+.. ....+.+||+||++++. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 479999999999999999999988887777777764432 3333 34789999999999886 467888899999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecC---CCCH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKN---STNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v 169 (184)
|+|+++++++..+..|...+........+|+++|+||+|+..... ..+....+. ....++++++||++ +.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 999999999999998887776655556799999999999864322 122222221 12235799999999 8899
Q ss_pred HHHHHHHHHhhh
Q 030008 170 DSVIDWLVKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~l~ 181 (184)
+++|..+.+.+.
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 74
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=1.3e-29 Score=180.34 Aligned_cols=163 Identities=20% Similarity=0.302 Sum_probs=123.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
.+||+++|++|+|||||++++.++.++..+.||++..+. .+. .....+.+|||+|++.+......+++++|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 379999999999999999999999998888898875543 233 34578999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHH--------HHhHhCcCcccCcc-eeEEEeeecC
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQA--------LTDEMGLKSITDRE-VCCFMISCKN 165 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~ 165 (184)
|+++++++..+..+|...... ...+.|+++|+||+|+..... ... +....+....+..+ .+|++|||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999986545443332 235799999999999964311 111 11111112222334 3799999999
Q ss_pred CCC-HHHHHHHHHHhhhc
Q 030008 166 STN-IDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~-v~~l~~~i~~~l~~ 182 (184)
+.| |+++|+........
T Consensus 160 ~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 160 SERSVRDVFHVATVASLG 177 (222)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 985 99999998876443
No 75
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=8.2e-30 Score=174.63 Aligned_cols=156 Identities=21% Similarity=0.353 Sum_probs=123.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
.++|+++|++|||||||++++.++.+.....+|.+... ..+..++ ..+.+||+||++++......+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999998888777777776433 3344333 6789999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+.... ..++|+++|+||+|+.... ..++..... ...+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 99999999999988888765543 2468999999999986432 122222211 123457999999999999999
Q ss_pred HHHHHHhh
Q 030008 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~l 180 (184)
++.|...+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
No 76
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=9.6e-30 Score=178.31 Aligned_cols=158 Identities=26% Similarity=0.445 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC-CCCCccceeEEE--EEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE-DMIPTVGFNMRK--VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+||+++|++|||||||++++.++.+.. .+.+|.+..... +.. ....+.+|||||++++......+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888753 456666644322 333 346899999999999998888999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+.... ....|+++|+||+|+.... ..++.. .+. ...+.+++++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~-~l~----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGE-RLA----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHH-HHH----HHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999888887765542 2468999999999986321 122211 111 112357999999999999999
Q ss_pred HHHHHHhhhcC
Q 030008 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~l~~~ 183 (184)
++.|.+.+.+.
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 77
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=1e-29 Score=173.45 Aligned_cols=155 Identities=20% Similarity=0.321 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|+|||||++++.++.+.....++.+.... .+. .....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999998887777777664433 233 33367899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++..+..|+..+... ...+.|+++|+||+|+.+... .++..... ...+++++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFA-----QENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 999999999988887766433 236789999999999864322 22222111 1123579999999999999999
Q ss_pred HHHHHhh
Q 030008 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~l 180 (184)
+.+.+.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 78
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=4.4e-30 Score=179.70 Aligned_cols=161 Identities=20% Similarity=0.267 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
.||+++|++|+|||||++++.++.+...+.+|.+..+. .+. .....+.+||++|++.+...+..+++.++++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 37999999999999999999999888777788764433 222 334789999999999998888888999999999999
Q ss_pred CCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhH---------hCcCccc-CcceeEEEeeecC
Q 030008 97 AADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDE---------MGLKSIT-DREVCCFMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~Sa~~ 165 (184)
+++++++..+. .|+..+.... .+.|+++|+||+|+.+.....+.... ....... ...+++++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 99999998886 4666655432 47899999999999654322211110 0011111 1235799999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++++|+.|.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999987653
No 79
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=2.7e-29 Score=171.71 Aligned_cols=158 Identities=24% Similarity=0.455 Sum_probs=125.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++.+..+.....++.+.... .+...+ ..+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988887777777775433 334433 67899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+.+++++..+..|+..+..... ..+|+++|+||+|+.... ..+.... .. ...+++++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEA-FA----EEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999988887777655432 579999999999986522 2222222 21 1233579999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+.|.+.+.++
T Consensus 155 ~~i~~~~~~~ 164 (164)
T smart00175 155 EELAREILKR 164 (164)
T ss_pred HHHHHHHhhC
Confidence 9999987653
No 80
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.7e-30 Score=165.03 Aligned_cols=160 Identities=22% Similarity=0.367 Sum_probs=134.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
--+||+++|+.|+|||+|+++|.++-+++....|++..+.. +..+..++++|||+|++++++...++++.++++++
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 45899999999999999999999999999999999965543 44566889999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
++|++..++|.-+.+|+.++-.+.. .++--|+|+||+|+.++ .++.++.+......+...+.++||+..+|++.+|
T Consensus 86 vydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 9999999999999999998876654 34667899999999743 4444555555555566678999999999999999
Q ss_pred HHHHHhhh
Q 030008 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~l~ 181 (184)
..+...+.
T Consensus 162 ~~~a~rli 169 (213)
T KOG0095|consen 162 LDLACRLI 169 (213)
T ss_pred HHHHHHHH
Confidence 98876654
No 81
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=2.2e-29 Score=171.74 Aligned_cols=156 Identities=21% Similarity=0.376 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++++..+.....++.+..+ ..+..++ ..+.+||+||++.+...+..+++.++++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999888776666666433 3343333 57899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++++..+..|+..+..... .+.|+++|+||+|+..... ..+...... +..+++++++||+++.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA----KELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH----HHhCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999888887754422 3699999999999953221 111111111 12236799999999999999999
Q ss_pred HHHHhh
Q 030008 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~l 180 (184)
.|.+.+
T Consensus 156 ~i~~~l 161 (161)
T cd01861 156 KIASAL 161 (161)
T ss_pred HHHHhC
Confidence 998754
No 82
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2e-29 Score=176.26 Aligned_cols=158 Identities=22% Similarity=0.355 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|+|||||++++.++.+...+.+|.+..+. .+.. ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999887767777774432 3333 3467899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++++..+..|+..+.... ....|+++|+||+|+.+.... .+....+. ...+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFC----DSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999998888775432 245899999999998643221 11111111 11244799999999999999999
Q ss_pred HHHHhhhc
Q 030008 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~l~~ 182 (184)
.+.+.+.+
T Consensus 156 ~l~~~~~~ 163 (188)
T cd04125 156 LLVKLIIK 163 (188)
T ss_pred HHHHHHHH
Confidence 99888764
No 83
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=5.7e-29 Score=173.84 Aligned_cols=156 Identities=19% Similarity=0.321 Sum_probs=120.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEe---CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
++|+++|++|+|||||++++.++.+...+.+|.+..+. .+.. ....+.+|||||++++......+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 48999999999999999999999988777787765432 2332 3467999999999999998888999999999999
Q ss_pred eCCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCC------HHHHHhHhCcCcccCcce-eEEEeeecCCC
Q 030008 96 DAADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPGALS------KQALTDEMGLKSITDREV-CCFMISCKNST 167 (184)
Q Consensus 96 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 167 (184)
|+++++++..+.. |+..+... ..+.|+++|+||+|+.+... .++..+. ....+. +++++||++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESV-----AKKQGAFAYLECSAKTME 153 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHH-----HHHcCCcEEEEccCCCCC
Confidence 9999999998864 55554332 24689999999999864321 1111111 111222 68999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030008 168 NIDSVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~ 182 (184)
|++++|+.+.+.+..
T Consensus 154 ~v~~~f~~l~~~~~~ 168 (187)
T cd04132 154 NVEEVFDTAIEEALK 168 (187)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987654
No 84
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=6.6e-29 Score=169.45 Aligned_cols=156 Identities=24% Similarity=0.409 Sum_probs=123.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++.+..+.....++.+..+.. +.. ....+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999888766666777654332 222 3477999999999999888889999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC-CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL-SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++++.....|+..+.......+.|+++|+||+|+.... ..++..... ....++++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFA-----RKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHH-----HHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999988888777666556789999999999997332 222222211 12345799999999999999999
Q ss_pred HHHHhh
Q 030008 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~l 180 (184)
.+.+.+
T Consensus 156 ~~~~~~ 161 (161)
T cd01863 156 ELVEKI 161 (161)
T ss_pred HHHHhC
Confidence 988753
No 85
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=2.9e-29 Score=171.48 Aligned_cols=156 Identities=26% Similarity=0.423 Sum_probs=123.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
++||+++|++|||||||++++.++.+.....+|.+..+ ..+. .....+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999888776667766332 2333 3346789999999999998888899999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+.+++++.....|+..+..... ...|+++++||+|+.+.. ..++...... ..+.+++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYAD-----ENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHH-----HcCCEEEEEECCCCCCHHHH
Confidence 999999999998888887765543 678999999999986422 2222222111 11257999999999999999
Q ss_pred HHHHHHhh
Q 030008 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~l 180 (184)
++.|.+.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999876
No 86
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=1.8e-29 Score=173.52 Aligned_cols=158 Identities=19% Similarity=0.283 Sum_probs=123.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+++|+++|++|||||||++++.++.+...+.+|.+..+ ..+.. ....+.+||+||++.+..++..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 47899999999999999999998888777777776433 22333 3367899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+.+++++.....|...+.......+.|+++|+||.|+..... .++...... .....+++++||+++.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ----QWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH----HcCCceEEEeeCCCCCCHHHHH
Confidence 9999999999888777766544445799999999999864322 111111110 1112579999999999999999
Q ss_pred HHHHHhh
Q 030008 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~l 180 (184)
+.+...+
T Consensus 157 ~~i~~~~ 163 (168)
T cd04177 157 IDLVRQI 163 (168)
T ss_pred HHHHHHH
Confidence 9998765
No 87
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.7e-30 Score=164.13 Aligned_cols=164 Identities=23% Similarity=0.398 Sum_probs=132.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--E-E-eCcEEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--V-T-KGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~-~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
....+|++++|+..+|||||+.++.+..+.....+|.+..... + + .+..++++|||+|+++++.....++++++++
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 3556899999999999999999999999999999999966443 2 1 3458899999999999999999999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|+|.++.++|..+..|.-.+-. ..+.+.|+|+|+||||+.++-.. ..+-........+..+|++||+.+.||++
T Consensus 98 iLmyDitNeeSf~svqdw~tqIkt-ysw~naqvilvgnKCDmd~eRvi---s~e~g~~l~~~LGfefFEtSaK~NinVk~ 173 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIKT-YSWDNAQVILVGNKCDMDSERVI---SHERGRQLADQLGFEFFETSAKENINVKQ 173 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHhee-eeccCceEEEEecccCCccceee---eHHHHHHHHHHhChHHhhhcccccccHHH
Confidence 999999999999999988877644 46678999999999999653221 11111112223344699999999999999
Q ss_pred HHHHHHHhhhcC
Q 030008 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~l~~~ 183 (184)
+|+.+++.+.++
T Consensus 174 ~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 174 VFERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 88
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=3.1e-29 Score=171.36 Aligned_cols=159 Identities=21% Similarity=0.332 Sum_probs=125.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE---EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|||||||+++++...+.....++....... .......+.+||+||++.+......+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 589999999999999999999888876666665533322 22334679999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+.++.++.....++..+.......++|+++|+||+|+... ....+..... ...+.+++++||++|.|++++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA-----RQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999888888877655567999999999999752 1222211111 11234799999999999999999
Q ss_pred HHHHhhhcC
Q 030008 175 WLVKHSKSK 183 (184)
Q Consensus 175 ~i~~~l~~~ 183 (184)
.+.+.+.++
T Consensus 156 ~l~~~~~~~ 164 (164)
T cd04139 156 DLVREIRQR 164 (164)
T ss_pred HHHHHHHhC
Confidence 999887653
No 89
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=4.6e-29 Score=170.72 Aligned_cols=155 Identities=17% Similarity=0.303 Sum_probs=120.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC--CCCCCCCCccceeEEE--EE---eCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG--GYSEDMIPTVGFNMRK--VT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~--~~~~~~~~t~~~~~~~--~~---~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+||+++|++|||||||++++..+ .+...+.+|.+..... +. .....+.+||+||++.+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999865 4666777777654322 22 23478999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-HHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ-ALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|+++++++..+..|+..+.... ...|+++|+||+|+.+..... .....+. ...+++++++||+++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999988888887765442 468999999999986442211 1111111 12235799999999999999
Q ss_pred HHHHHHHhh
Q 030008 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~l 180 (184)
+++.|.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999998875
No 90
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=3e-29 Score=178.75 Aligned_cols=160 Identities=19% Similarity=0.329 Sum_probs=127.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+||+++|++|+|||||+++|.+..+...+.+|.+... ..+..+ ...+.+||+||++++...+..+++.++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 558999999999999999999998888777778877543 334333 3689999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+|+++++++..+..|+..+... ...+.|+++|+||+|+..... ..+....+. ....++++++||++|.|++++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEKA 165 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999998888776543 235799999999999854322 122222221 123468999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|+.|...+.+
T Consensus 166 f~~l~~~i~~ 175 (216)
T PLN03110 166 FQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHH
Confidence 9999887754
No 91
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=7.2e-29 Score=174.28 Aligned_cols=151 Identities=21% Similarity=0.386 Sum_probs=122.4
Q ss_pred EcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEE--E--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc
Q 030008 25 IGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV--T--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 25 ~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~--~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 100 (184)
+|++|||||||+++++.+.+...+.+|++...... . .....+.+|||+|++++..++..++++++++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998888878888988655432 2 3457899999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 101 DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
.++..+..|...+.... .++|+++|+||+|+.......+... ......+++++|||++|.||+++|+.|...+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~~-----~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSIT-----FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHHH-----HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999988888776543 4799999999999854322111111 1223456899999999999999999999877
Q ss_pred hc
Q 030008 181 KS 182 (184)
Q Consensus 181 ~~ 182 (184)
.+
T Consensus 154 ~~ 155 (200)
T smart00176 154 IG 155 (200)
T ss_pred Hh
Confidence 54
No 92
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=1.3e-28 Score=178.17 Aligned_cols=157 Identities=18% Similarity=0.311 Sum_probs=123.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccce-eEEEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGF-NMRKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~-~~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
++|+++|++|+|||||+++++++.+...+.+|++. ....+.. ..+.+.+|||+|++.+..+...++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999998888777788762 2233333 34778999999999998888888899999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCC--------CCCCCcEEEEeeCCCCCC--CCCHHHHHhHhCcCcccCcceeEEEeeecCC
Q 030008 97 AADPDNLSISRSELHDLLNKP--------SLSGIPLLVLGNKIDKPG--ALSKQALTDEMGLKSITDREVCCFMISCKNS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~iiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+++.++|+.+..|+..+.... ...++|+++|+||+|+.. ....+++.+.... ...+.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence 999999999988877775431 224689999999999964 2233343333321 12457999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030008 167 TNIDSVIDWLVKHS 180 (184)
Q Consensus 167 ~~v~~l~~~i~~~l 180 (184)
.|++++|+.|.+.+
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998865
No 93
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.2e-28 Score=168.19 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=122.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC-CCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS-EDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
++.++|+++|++|+|||||+++++++.+. ..+.+|.+..+ ..+..++ ..+.+||++|++.+......+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46789999999999999999999998887 77788877443 2343333 6789999999999988888889999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC-----CHHHHHhHhCcCcccCcceeEEEeeecCC
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL-----SKQALTDEMGLKSITDREVCCFMISCKNS 166 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
++|+|+++++++..+..|+..+.. ..++|+++|+||+|+.+.. ..+++.+.+.. ..++++||++|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL-------PPPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCC-------CCCEEEEeccC
Confidence 999999999888888777765422 1368999999999985432 12233222211 13689999999
Q ss_pred CCHHHHHHHHHHhhhc
Q 030008 167 TNIDSVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~l~~ 182 (184)
.|++++|+.|.+.+.+
T Consensus 152 ~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 152 DSSNELFTKLATAAQY 167 (169)
T ss_pred ccHHHHHHHHHHHhhC
Confidence 9999999999987754
No 94
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.96 E-value=2.1e-28 Score=168.57 Aligned_cols=160 Identities=26% Similarity=0.438 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++.+..+.....+|.+..+ ..+... ...+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999888776667766433 223333 356789999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCC---CCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPS---LSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
|+.+++++.....|...+..... ..++|+++|+||+|+..+ ...++....... ....+++++||++|.|++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~ 156 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS----NGNIPYFETSAKEAINVE 156 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH----cCCceEEEEECCCCCCHH
Confidence 99999888887776665544322 337899999999999732 223332222211 112479999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++++.|.+.+.++
T Consensus 157 ~l~~~i~~~~~~~ 169 (172)
T cd01862 157 QAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999876653
No 95
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=9.7e-29 Score=169.56 Aligned_cols=162 Identities=23% Similarity=0.285 Sum_probs=115.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 97 (184)
+||+++|++|+|||||++++.++.+.....++...... .+......+.+|||||++.+...+..++..+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999988886554443332222 2333567899999999988887778888999999999999
Q ss_pred CCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCc-ceeEEEeeecCCCCHHHHHHHH
Q 030008 98 ADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDR-EVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
++++++..+..+|...+.... .+.|+++|+||+|+.+................... ..+++++||+++.|++++|+.+
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~ 159 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYA 159 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHH
Confidence 999999987654443333222 37999999999999754332111111000000001 1268999999999999999999
Q ss_pred HHhhhc
Q 030008 177 VKHSKS 182 (184)
Q Consensus 177 ~~~l~~ 182 (184)
...+..
T Consensus 160 ~~~~~~ 165 (166)
T cd01893 160 QKAVLH 165 (166)
T ss_pred HHHhcC
Confidence 887643
No 96
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.96 E-value=1.5e-29 Score=172.79 Aligned_cols=155 Identities=28% Similarity=0.515 Sum_probs=125.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
||+++|+++||||||++++.++.+...+.+|.+.... .+.. ..+.+.+||++|++++......+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999998888888864433 3333 44779999999999999988999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+++++++..+..|+..+..... ...|+++|+||.|+.+. ...++..... ...+.+++++||+++.||.++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999988888765543 56899999999998752 2222221111 12225799999999999999999
Q ss_pred HHHHhhh
Q 030008 175 WLVKHSK 181 (184)
Q Consensus 175 ~i~~~l~ 181 (184)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 97
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=2.6e-29 Score=173.56 Aligned_cols=159 Identities=20% Similarity=0.288 Sum_probs=118.3
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCC
Q 030008 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
|+++|++|+|||||++++.++.+...+.+|....+. .+. .....+.+|||||++.+......+++++|++++|+|++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 589999999999999999998887777777654332 233 23367999999999999988888999999999999999
Q ss_pred CcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHH--------hHhCcCcccCcc-eeEEEeeecCCC
Q 030008 99 DPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALT--------DEMGLKSITDRE-VCCFMISCKNST 167 (184)
Q Consensus 99 ~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~--------~~~~~~~~~~~~-~~~~~~Sa~~~~ 167 (184)
+++++..+.. |+..+.... .++|+++|+||+|+.+.... ..+. ...........+ .++++|||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999998864 555554332 47999999999998642211 1110 000001111222 379999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030008 168 NIDSVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~ 182 (184)
|++++|+.+.+.+-+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999987644
No 98
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=4.9e-29 Score=175.26 Aligned_cols=160 Identities=19% Similarity=0.255 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhH--------HhHHHHhcc
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFR--------SMWERYCRA 87 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~--------~~~~~~~~~ 87 (184)
++|+++|++|+|||||++++.++.+...+.||.+... ..+..++ ..+.+|||||...+. ......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999988877777776332 2333333 678899999965431 113345789
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeec
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKP--SLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+|++++|||+++++++..+..|+..+.... ...++|+++|+||+|+..... ..+....+ ..+...+++++|||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVL---VRKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHH---HHHhcCCcEEEecCC
Confidence 999999999999999999888887776543 235699999999999954311 11111111 011234679999999
Q ss_pred CCCCHHHHHHHHHHhhhc
Q 030008 165 NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~~ 182 (184)
+|.|++++|+.+...+..
T Consensus 158 ~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 158 YNWHILLLFKELLISATT 175 (198)
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 999999999999876543
No 99
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.96 E-value=2.3e-29 Score=173.82 Aligned_cols=160 Identities=20% Similarity=0.287 Sum_probs=117.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|+|||||++++.++.+...+.+|..... ..+..+ ...+.+||+||++.+......+++.++++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 5899999999999999999999888777777765332 223333 3568899999999998888888999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC---------cCcccCcc-eeEEEeeecCC
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG---------LKSITDRE-VCCFMISCKNS 166 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~Sa~~~ 166 (184)
+.+++++..+...+...+... ..+.|+++|+||+|+.+............ ....+..+ .++++|||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999988865444333332 46799999999999864322111111000 01111122 36899999999
Q ss_pred CCHHHHHHHHHHhh
Q 030008 167 TNIDSVIDWLVKHS 180 (184)
Q Consensus 167 ~~v~~l~~~i~~~l 180 (184)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
No 100
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=6.2e-29 Score=174.46 Aligned_cols=161 Identities=20% Similarity=0.285 Sum_probs=120.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC-CCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE-DMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+||+++|++|+|||||+++++++.+.. .+.+|.+..+ ..+..+ ...+.+||+||++++......++.++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999888764 4667776443 234433 35678999999999988888899999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+|+++++++..+..|+..+... ..+.|+++|+||+|+.+... ...+.............++++++||++|.|+++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999998888777776543 24689999999999864321 00100000001111223578999999999999999
Q ss_pred HHHHHhhhc
Q 030008 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~l~~ 182 (184)
+.|.+.+.+
T Consensus 159 ~~i~~~~~~ 167 (193)
T cd04118 159 QKVAEDFVS 167 (193)
T ss_pred HHHHHHHHH
Confidence 999987644
No 101
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=4.1e-29 Score=171.23 Aligned_cols=156 Identities=19% Similarity=0.245 Sum_probs=115.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EE--EEeCcEEEEEEecCCchh-hHHhHHHHhccCCEEEEEEe
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RK--VTKGNVTIKLWDLGGQPR-FRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~--~~~~~~~~~~~D~~G~~~-~~~~~~~~~~~~~~ii~v~d 96 (184)
+|+++|++|+|||||+++++.+.+...+.+|..... .. +......+.+||+||++. .......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 589999999999999999998877666666664222 22 333446788999999885 34456778899999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCC-CHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPS-LSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNST-NIDSV 172 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~l 172 (184)
+++++++..+..|+..+..... ...+|+++|+||+|+.... ..++.... ....+.+++++||++|. |++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKL-----ASELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHH-----HHHcCCEEEEeCCCCCchhHHHH
Confidence 9999999988877766554332 3579999999999985321 11111111 11123479999999994 99999
Q ss_pred HHHHHHhhh
Q 030008 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~l~ 181 (184)
|+.+.+.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
No 102
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.3e-29 Score=160.00 Aligned_cols=162 Identities=21% Similarity=0.308 Sum_probs=131.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..-+|++++|+.|+|||+|+++|..+++.+....|++..+.. ++ .+.+++++|||+|++++++....+++.+.+++
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 455899999999999999999999999999999999966543 33 34588999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+|+++.++|..+..|+.+.... ..+++-+++++||.|+...-+ +.-.....+..+...-++++||++|+||++.
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~---VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPERE---VTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhh---hhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 999999999999999999887543 336788999999999974322 2222222333344456899999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|-...+.+..
T Consensus 163 Fl~c~~tIl~ 172 (214)
T KOG0086|consen 163 FLKCARTILN 172 (214)
T ss_pred HHHHHHHHHH
Confidence 9877766543
No 103
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.2e-28 Score=153.32 Aligned_cols=172 Identities=34% Similarity=0.637 Sum_probs=158.5
Q ss_pred HHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCE
Q 030008 11 LRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 11 ~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 90 (184)
+.+.+-.++++|+.+|-.++||||++..++-+ .+....||++++...+.+++..|.+||.+|+.+.+..|.+|+....+
T Consensus 9 ~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~-~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqg 87 (180)
T KOG0071|consen 9 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 87 (180)
T ss_pred HHHHhCcccceEEEEecccCCceehhhHHhcC-CCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCce
Confidence 34557789999999999999999999999843 44577899999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|||+|..+.+..+..+..+..++........++++..||.|+.....++++...+.+...+...|.+.++||.+|+|+.
T Consensus 88 lIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 88 LIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHH
Confidence 99999999999999999999999999888899999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
+=+.+|...++.+
T Consensus 168 eglswlsnn~~~k 180 (180)
T KOG0071|consen 168 EGLSWLSNNLKEK 180 (180)
T ss_pred HHHHHHHhhccCC
Confidence 9999999887653
No 104
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.8e-29 Score=170.10 Aligned_cols=163 Identities=21% Similarity=0.357 Sum_probs=133.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
..+.+||+++|++++|||-|+.++.++.+....-+|++..... ++.+..+.++|||+||++|+.....+++.+.++
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA 90 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 90 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence 4577999999999999999999999999998888999965544 445668899999999999999999999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|||++...+|+.+..|+.++..+. ..++++++|+||+|+.+. ..+..+.....+...+..++++||+++.||+.
T Consensus 91 llVYDITr~~Tfenv~rWL~ELRdha-d~nivimLvGNK~DL~~l---raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~ 166 (222)
T KOG0087|consen 91 LLVYDITRRQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLNHL---RAVPTEDGKAFAEKEGLFFLETSALDATNVEK 166 (222)
T ss_pred EEEEechhHHHHHHHHHHHHHHHhcC-CCCeEEEEeecchhhhhc---cccchhhhHhHHHhcCceEEEecccccccHHH
Confidence 99999999999999999999987654 468999999999999751 11111111112222334699999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
.|+.+...+.+
T Consensus 167 aF~~~l~~I~~ 177 (222)
T KOG0087|consen 167 AFERVLTEIYK 177 (222)
T ss_pred HHHHHHHHHHH
Confidence 99988876643
No 105
>PLN03118 Rab family protein; Provisional
Probab=99.96 E-value=2e-28 Score=174.12 Aligned_cols=160 Identities=20% Similarity=0.365 Sum_probs=121.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...++|+++|++|+|||||++++.++.+. ...+|.+... ..+.. ....+.+|||||++++...+..+++.+|+++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 45789999999999999999999987764 4566666433 22333 3467899999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhc-CCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 93 YVVDAADPDNLSISRSELHDLLN-KPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
+|+|+++++++..+...+...+. .......|+++|+||+|+..... .++... ......++++++||+++.|+
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~-----~~~~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA-----LAKEHGCLFLECSAKTRENV 165 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-----HHHHcCCEEEEEeCCCCCCH
Confidence 99999999999998765544333 22234689999999999864322 121111 11123457999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030008 170 DSVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~l~~ 182 (184)
+++|+.|.+.+.+
T Consensus 166 ~~l~~~l~~~~~~ 178 (211)
T PLN03118 166 EQCFEELALKIME 178 (211)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 106
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=1.7e-28 Score=174.25 Aligned_cols=159 Identities=19% Similarity=0.273 Sum_probs=124.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+||+++|++|+|||||++++.+..+.....+|++.... .+.. ....+.+|||+|++.+..++..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988887777777775432 2333 33678899999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+.... ....|+++|+||+|+.+.. ..++..+.. +..+++++++||+++.|+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~e 158 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEE 158 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHH
Confidence 999999999999888877665432 3578999999999986432 222211111 12345799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+|+.+.+.+.+
T Consensus 159 ~f~~l~~~~~~ 169 (210)
T PLN03108 159 AFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHH
Confidence 99998877654
No 107
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=2e-28 Score=166.94 Aligned_cols=155 Identities=24% Similarity=0.356 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|+|||||+++++++.+.....++.... ...+.. ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999888766555555432 223332 3357999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++.....|+..+..... .++|+++|+||+|+..... .++..+.. ...+.+++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999888887777654433 3789999999999874322 22222221 1224568999999999999999
Q ss_pred HHHHHhh
Q 030008 174 DWLVKHS 180 (184)
Q Consensus 174 ~~i~~~l 180 (184)
+.|.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998865
No 108
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.8e-29 Score=162.29 Aligned_cols=153 Identities=25% Similarity=0.473 Sum_probs=129.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--E--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
++.+|+|++|+|||+|+.+|..+.++..+..|++.... . +..+.+++.+||++|+++++.+...+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 56789999999999999999999999999999995543 3 3355689999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-----HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-----KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
|+++.+||.+...|+.++...+ ...|-++|+||.|..+... ...+... .++.+|++||+..+|++
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~--------mgie~FETSaKe~~NvE 158 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQ--------MGIELFETSAKENENVE 158 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHHh--------cCchheehhhhhcccch
Confidence 9999999999999999997665 4789999999999875422 2233333 34469999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
..|..|...+.+
T Consensus 159 ~mF~cit~qvl~ 170 (198)
T KOG0079|consen 159 AMFHCITKQVLQ 170 (198)
T ss_pred HHHHHHHHHHHH
Confidence 999998876543
No 109
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=3.9e-28 Score=171.04 Aligned_cols=157 Identities=20% Similarity=0.286 Sum_probs=122.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccc-eeEEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG-FNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 97 (184)
||+++|++|+|||||+++++.+.+...+.+|.. .....+...+ ..+.+||+||+..+...+..++..+|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999999888776666654 3333344444 6789999999999988888899999999999999
Q ss_pred CCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 98 ADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS---KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
.+++++..+..|+..+.......++|+++|+||+|+..... .....+.. ......+++++||++|.|++++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~----~~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTV----ELDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHH----HhhcCCcEEEecCCCCCCHHHHHH
Confidence 99999999888887777665556799999999999864211 11111111 111234689999999999999999
Q ss_pred HHHHhhh
Q 030008 175 WLVKHSK 181 (184)
Q Consensus 175 ~i~~~l~ 181 (184)
.|.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998764
No 110
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=7.8e-29 Score=171.13 Aligned_cols=157 Identities=18% Similarity=0.256 Sum_probs=115.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|+|||||++++.++.+...+.+|....+ ..+.. ....+.+||+||++++...+..+++++|++++|+|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999998888877777764222 22332 34678899999999998888889999999999999
Q ss_pred CCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---------HHHHhHhCcCcccCcc-eeEEEeeecC
Q 030008 97 AADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---------QALTDEMGLKSITDRE-VCCFMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 165 (184)
+++++++.... .|+..+... ..+.|+++|+||+|+.+.... ..+............+ .+++++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999998875 455555432 246899999999998643210 0000000001111122 3799999999
Q ss_pred CCCHHHHHHHHHH
Q 030008 166 STNIDSVIDWLVK 178 (184)
Q Consensus 166 ~~~v~~l~~~i~~ 178 (184)
|.|++++|+.++.
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 111
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.96 E-value=2.4e-28 Score=174.57 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC-CCCCCccc--eeEEEEE--eCcEEEEEEecCCchhhHHhHHHHhc-cCCEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS-EDMIPTVG--FNMRKVT--KGNVTIKLWDLGGQPRFRSMWERYCR-AVSAIVY 93 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~-~~~~~t~~--~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~-~~~~ii~ 93 (184)
+||+++|++|+|||||++++..+.+. ..+.++.+ .....+. .....+.+||+||++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999877775 55556653 2223333 345789999999988 223344556 8999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|||+++++++.....|+..+.......++|+++|+||+|+...... .+....+ ....+++++++||+++.|++++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~----a~~~~~~~~e~SA~~~~gv~~l 154 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRAC----AVVFDCKFIETSAGLQHNVDEL 154 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHH----HHHcCCeEEEecCCCCCCHHHH
Confidence 9999999999988888877765544467999999999998643221 1111111 1122457999999999999999
Q ss_pred HHHHHHhhh
Q 030008 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~l~ 181 (184)
|+.|.+.+.
T Consensus 155 ~~~l~~~~~ 163 (221)
T cd04148 155 LEGIVRQIR 163 (221)
T ss_pred HHHHHHHHH
Confidence 999998875
No 112
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.96 E-value=2e-27 Score=161.14 Aligned_cols=152 Identities=26% Similarity=0.457 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEE--Ee--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV--TK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~--~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+||+++|++|||||||++++.+..+.....+|.+...... .. ....+.+||+||++.+......+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988877777777655443 22 3478999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC--CCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP--GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+.+++++.....|+..+.... ....|+++++||+|+. .....++..+... ....+++++||+++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 9999888888888777765543 2569999999999996 2223333332222 134579999999999999999
Q ss_pred HHHH
Q 030008 174 DWLV 177 (184)
Q Consensus 174 ~~i~ 177 (184)
+.|.
T Consensus 155 ~~i~ 158 (159)
T cd00154 155 QSLA 158 (159)
T ss_pred HHHh
Confidence 9886
No 113
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.1e-27 Score=164.68 Aligned_cols=159 Identities=23% Similarity=0.379 Sum_probs=121.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..++|+++|++|+|||||++++..+.+.....+|.+.. ...+...+ ..+.+||+||++.+......++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 456899999999999999999999888776667776633 33344443 66889999999999998899999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|+.+++++..+..|+..+... .....|+++|+||+|+.+... ..+....+. .....+++++||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~ 159 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEK 159 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHH
Confidence 999999998888887776655332 234689999999999864322 122222221 11235799999999999999
Q ss_pred HHHHHHHhh
Q 030008 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~l 180 (184)
+++.|.+.+
T Consensus 160 l~~~i~~~~ 168 (169)
T cd04114 160 LFLDLACRL 168 (169)
T ss_pred HHHHHHHHh
Confidence 999998764
No 114
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.5e-28 Score=172.23 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=112.0
Q ss_pred eeEEEEEcCCCCChHHHHH-HHHcCC-----CCCCCCCccce-e-EE-----------EEEeCcEEEEEEecCCchhhHH
Q 030008 19 EMELSLIGLQNAGKTSLVN-VVATGG-----YSEDMIPTVGF-N-MR-----------KVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~-~l~~~~-----~~~~~~~t~~~-~-~~-----------~~~~~~~~~~~~D~~G~~~~~~ 79 (184)
.+||+++|++|+|||||+. ++.++. +...+.||++. . +. .+....+.+.+|||+|++..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 4799999999999999996 565433 34556677742 1 11 23344588999999998753
Q ss_pred hHHHHhccCCEEEEEEeCCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCC----------------HHHH
Q 030008 80 MWERYCRAVSAIVYVVDAADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPGALS----------------KQAL 142 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----------------~~~~ 142 (184)
....+++++|++++|||+++++++..+.. |+..+.... ...|+++|+||+|+.+... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 34557899999999999999999999864 666554332 4689999999999864200 0111
Q ss_pred HhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 143 TDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
.........+..+++|++|||++|.||+++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 1122222333445689999999999999999999864
No 115
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=8.5e-28 Score=166.13 Aligned_cols=159 Identities=19% Similarity=0.280 Sum_probs=117.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
.||+++|++|||||||++++.++.+...+.+|.+... ..+.. ....+.+|||||++.+.......+.++|++++|+|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 5899999999999999999999888877777776443 23333 34678999999999988887788899999999999
Q ss_pred CCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-HHHhHhC--------cCccc-CcceeEEEeeecC
Q 030008 97 AADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ-ALTDEMG--------LKSIT-DREVCCFMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~--------~~~~~-~~~~~~~~~Sa~~ 165 (184)
+++++++..+.. |...+... ..+.|+++|+||+|+.+..... ++..... ..... ....++++|||++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999998888864 44444322 2468999999999986432211 1110000 00001 1123799999999
Q ss_pred CCCHHHHHHHHHHhh
Q 030008 166 STNIDSVIDWLVKHS 180 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l 180 (184)
|.|++++|+.|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 116
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=5.8e-28 Score=167.73 Aligned_cols=158 Identities=15% Similarity=0.330 Sum_probs=124.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee-EEEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN-MRKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
.||+++|++|+|||||++++....+.....+|.... ...+... ...+.+||+||++++......++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 589999999999999999999888776666666532 3333333 3568999999999999888899999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+.+.+++.....++..+.......+.|+++|+||+|+..... ..... .+. ....++++++||+++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGK-ELA----ESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHH-HHH----HHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999988888887765556789999999999864221 11111 111 11235799999999999999999
Q ss_pred HHHHhhhc
Q 030008 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~l~~ 182 (184)
.+.+.+.+
T Consensus 157 ~l~~~~~~ 164 (180)
T cd04137 157 LLIEEIEK 164 (180)
T ss_pred HHHHHHHH
Confidence 99988764
No 117
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=2.8e-28 Score=167.80 Aligned_cols=158 Identities=19% Similarity=0.330 Sum_probs=115.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-E--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
+||+++|++|||||||++++++..+.....++...... . .......+.+||+||++.+.......++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999998886666665553222 1 22345679999999999887777778899999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH--------HHhHhCcCcccCcc-eeEEEeeecCCC
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA--------LTDEMGLKSITDRE-VCCFMISCKNST 167 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 167 (184)
+++++++......+...+.... ...|+++|+||+|+.+...... +............+ .+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9998888877654444333322 3799999999999875543211 00111111111122 379999999999
Q ss_pred CHHHHHHHHHH
Q 030008 168 NIDSVIDWLVK 178 (184)
Q Consensus 168 ~v~~l~~~i~~ 178 (184)
|++++++.|.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 118
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=3.9e-27 Score=160.25 Aligned_cols=155 Identities=21% Similarity=0.341 Sum_probs=121.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDA 97 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 97 (184)
||+++|++|||||||++++++..+.....++..... ..+... ...+.+||+||++.+......+++.++++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 689999999999999999998877777666666322 223333 47789999999999998899999999999999999
Q ss_pred CCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 98 ADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
.+++++.....++..+.........|+++|+||+|+..... .+....... ....+++++||+++.|++++++.
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK-----EWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHH
Confidence 99999998888888777654446799999999999875221 122111111 11257999999999999999999
Q ss_pred HHHhh
Q 030008 176 LVKHS 180 (184)
Q Consensus 176 i~~~l 180 (184)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
No 119
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=6.6e-28 Score=157.62 Aligned_cols=163 Identities=24% Similarity=0.383 Sum_probs=134.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EE---eCcEEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VT---KGNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~---~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
..++++.++|+.-+|||||++.++.++++....||++..... +. ....++++|||+|++++++.+.++++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 578999999999999999999999999999999999954321 22 2337899999999999999999999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCC-CcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSG-IPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
++|+|.++.++|+-+..|+.+.......+. +-+.+|++|+|+.+. .++..+..+..++.+++.++++||++|.||+
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq---RqVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ---RQVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh---ccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 999999999999999999887655444333 456889999999743 3344444455566777789999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
+.|..|.+.+..
T Consensus 163 EAF~mlaqeIf~ 174 (213)
T KOG0091|consen 163 EAFDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999998887643
No 120
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.95 E-value=3e-26 Score=157.61 Aligned_cols=157 Identities=20% Similarity=0.199 Sum_probs=110.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCcE-EEEEEecCCchh-------hHHhHHHHhccCCE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGNV-TIKLWDLGGQPR-------FRSMWERYCRAVSA 90 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~-~~~~~D~~G~~~-------~~~~~~~~~~~~~~ 90 (184)
+|+++|++|||||||++++.+.... ..+.+|.......+..++. ++.+|||||+.. ....+...+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 6899999999999999999965432 2234455555555555565 899999999631 12222233457999
Q ss_pred EEEEEeCCCc-CcHHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 91 IVYVVDAADP-DNLSISRSELHDLLNKPS-LSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 91 ii~v~d~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|++++ +++..+..+...+..... ...+|+++|+||+|+.+.....+....... .....+++++||+++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK---ELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh---hCCCCCEEEEecCCCCC
Confidence 9999999998 778777777666544321 246899999999999765443332222211 11234689999999999
Q ss_pred HHHHHHHHHHhh
Q 030008 169 IDSVIDWLVKHS 180 (184)
Q Consensus 169 v~~l~~~i~~~l 180 (184)
++++++.|.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 121
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.3e-29 Score=161.20 Aligned_cols=160 Identities=21% Similarity=0.370 Sum_probs=131.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE-------------eCcEEEEEEecCCchhhHHhHHHHhc
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT-------------KGNVTIKLWDLGGQPRFRSMWERYCR 86 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~-------------~~~~~~~~~D~~G~~~~~~~~~~~~~ 86 (184)
++.+.+|+.|+||||++.++..+.+.....+|+++..+.-. ....++++|||+|+++++++...+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999997665421 12378999999999999999999999
Q ss_pred cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCC
Q 030008 87 AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNS 166 (184)
Q Consensus 87 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
.+-+++++||+++.+||.++..|+..+..+....+..+++++||+|+.+.-. +.+..........++|||++||-+|
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~---Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRV---VSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhh---hhHHHHHHHHHHhCCCeeeeccccC
Confidence 9999999999999999999999999988888878899999999999974322 1111111222334558999999999
Q ss_pred CCHHHHHHHHHHhhhc
Q 030008 167 TNIDSVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~l~~ 182 (184)
.||++..+.+.+.+.+
T Consensus 167 ~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 167 TNVEKAVELLLDLVMK 182 (219)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999998888877644
No 122
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=5.5e-26 Score=162.05 Aligned_cols=159 Identities=23% Similarity=0.403 Sum_probs=127.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE----eCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...+||+++|++|||||||++++..+.+...+.+|.+....... .+...+.+||++|++++...+..++.++++++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 46789999999999999999999888888888888886655432 34588999999999999888888999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+.....+.... ....++.++++||++|.|++++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 87 IMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITF-----HRKKNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHH-----HHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999888887775432 46899999999998643222221111 1123457899999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|..|.+.+..
T Consensus 160 f~~ia~~l~~ 169 (215)
T PTZ00132 160 FLWLARRLTN 169 (215)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 123
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=4.4e-26 Score=156.50 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEEeCcEEEEEEecCCchhh----H-----HhHHHHhccC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF----R-----SMWERYCRAV 88 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~----~-----~~~~~~~~~~ 88 (184)
.+|+++|++|+|||||++++.++.... .+.+|..........++..+.+|||||+... . .........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 378999999999999999999877643 2344666666666667789999999997321 0 1111122336
Q ss_pred CEEEEEEeCCCcCcH--HHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCC
Q 030008 89 SAIVYVVDAADPDNL--SISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNS 166 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
|++++|+|+++..++ .....++..+.... .+.|+++|+||+|+.+.....+ ...+ .....++++++||++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~-~~~~----~~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSE-IEEE----EELEGEEVLKISTLTE 153 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHH-HHHh----hhhccCceEEEEeccc
Confidence 899999999987643 44445555443221 3689999999999975433222 1111 1223467999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030008 167 TNIDSVIDWLVKHS 180 (184)
Q Consensus 167 ~~v~~l~~~i~~~l 180 (184)
.|++++++.+.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 124
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=2.9e-26 Score=160.19 Aligned_cols=159 Identities=21% Similarity=0.304 Sum_probs=114.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
.||+++|++|+|||||++++..+.+...+.+|....+. .+. .....+.+||++|++.+.......+..++++++|+|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999987777666666553322 222 233668999999998887666667889999999999
Q ss_pred CCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-H------HHhHhCcCcccCcc-eeEEEeeecCCC
Q 030008 97 AADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ-A------LTDEMGLKSITDRE-VCCFMISCKNST 167 (184)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~------~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 167 (184)
+++.+++..+.. |+..+.... ...|+++|+||+|+.+..... . ..........+..+ .++++|||++|.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999998864 555554322 469999999999985421100 0 00000001111222 369999999999
Q ss_pred CHHHHHHHHHHhh
Q 030008 168 NIDSVIDWLVKHS 180 (184)
Q Consensus 168 ~v~~l~~~i~~~l 180 (184)
|++++|+.+.+.+
T Consensus 160 ~v~~~f~~l~~~~ 172 (187)
T cd04129 160 GVDDVFEAATRAA 172 (187)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998664
No 125
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=6.6e-28 Score=156.90 Aligned_cols=161 Identities=23% Similarity=0.320 Sum_probs=129.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccce--eEEEE--EeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGF--NMRKV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~--~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+|++++|..-+|||||+-+++.+++.....+|+.- ...++ .....++.+|||+|+++|..+-+.|++.++++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 4689999999999999999999999998887777762 22333 3345789999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|||+++.++|+.+..|..++... ....+.++||+||+|+.++ ..+..+..+......++.++++||+++.||.++|
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEee---R~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elF 167 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEE---RQVTRQEAEAYAESVGALYMETSAKDNVGISELF 167 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHh---hhhhHHHHHHHHHhhchhheecccccccCHHHHH
Confidence 99999999999999999987543 4456899999999999632 2222222222333445569999999999999999
Q ss_pred HHHHHhhhc
Q 030008 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~l~~ 182 (184)
+.+...+.+
T Consensus 168 e~Lt~~MiE 176 (218)
T KOG0088|consen 168 ESLTAKMIE 176 (218)
T ss_pred HHHHHHHHH
Confidence 999877654
No 126
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=1.1e-25 Score=168.76 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=120.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEe-CcEEEEEEecCCchh-------hHHhHHHHhc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR-------FRSMWERYCR 86 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-------~~~~~~~~~~ 86 (184)
+--..|+++|.||||||||++++++... ...+++|..+....+.. +...+++||+||... ....+..+++
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 3346899999999999999999997543 34567888888887776 456899999999632 3344556678
Q ss_pred cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCCCCCCCHH-HHHhHhCcCcccCcceeEEEeeec
Q 030008 87 AVSAIVYVVDAADPDNLSISRSELHDLLNKPS-LSGIPLLVLGNKIDKPGALSKQ-ALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 87 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
.++++++|+|+++.++++....|..++..+.. ...+|+++|+||+|+.+..... +..+.. .....++++++||+
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAk 311 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAV 311 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcC
Confidence 89999999999988778887777766654321 2468999999999987543221 111111 11123579999999
Q ss_pred CCCCHHHHHHHHHHhhhc
Q 030008 165 NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~~ 182 (184)
+++|++++++.|.+.+.+
T Consensus 312 tg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 312 TGEGLDELLRALWELLEE 329 (335)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999988765
No 127
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.94 E-value=1.6e-25 Score=152.90 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC---CCCC--CCCccceeEEEEEeC-cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG---YSED--MIPTVGFNMRKVTKG-NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~---~~~~--~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+.|+++|++|+|||||++++.+.. ++.. ...|....+..+... +..+.+|||||++++......++.++|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 368999999999999999998542 2221 233455544455544 6789999999999988777778889999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH----HHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK----QALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
|+|+.+... ......+.. .... ...|+++|+||+|+.+.... +++.+.+... .....+++++||++++|+
T Consensus 81 V~d~~~~~~-~~~~~~~~~-~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 81 VVAADEGIM-PQTREHLEI-LELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EEECCCCcc-HhHHHHHHH-HHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCcCH
Confidence 999987321 111111111 1111 12499999999999753211 2222222111 013457999999999999
Q ss_pred HHHHHHHHH
Q 030008 170 DSVIDWLVK 178 (184)
Q Consensus 170 ~~l~~~i~~ 178 (184)
+++++.+..
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998764
No 128
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.94 E-value=3.7e-25 Score=155.50 Aligned_cols=116 Identities=27% Similarity=0.391 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe-------CcEEEEEEecCCchhhHHhHHHHhccCCE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK-------GNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~-------~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 90 (184)
+||+++|+.++|||||+++++++.+...+.+|++.... .+.. ..+.+.+||++|++++..+...+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999988888888884432 2332 34789999999999999999999999999
Q ss_pred EEEEEeCCCcCcHHHHHHHHHHHhcCC------------------CCCCCcEEEEeeCCCCCC
Q 030008 91 IVYVVDAADPDNLSISRSELHDLLNKP------------------SLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~iiv~nK~D~~~ 135 (184)
+++|+|+++++++..+..|+..+.... ....+|+++|+||.|+.+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 999999999999999999988876431 124689999999999864
No 129
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.94 E-value=3.1e-26 Score=159.88 Aligned_cols=162 Identities=23% Similarity=0.356 Sum_probs=134.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE---EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
..++|+++|.+|+|||+|..++....+...+.||++..+.. ++.+...+.++||+|++.+..+...++...+++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999854443 344457788999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|++++..||+.+..+...+.........|+++|+||+|+... ..+..+.+........++++++||+...+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~---R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE---RQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc---cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 999999999999998888866555566899999999999752 11111222222455667799999999999999999
Q ss_pred HHHHhhhc
Q 030008 175 WLVKHSKS 182 (184)
Q Consensus 175 ~i~~~l~~ 182 (184)
.|.+.+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99987654
No 130
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=4.1e-25 Score=156.38 Aligned_cols=154 Identities=23% Similarity=0.299 Sum_probs=108.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCcE-EEEEEecCCchh---------hHHhHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGNV-TIKLWDLGGQPR---------FRSMWERY 84 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~-~~~~~D~~G~~~---------~~~~~~~~ 84 (184)
+..++|+++|++|||||||++++++.... ..+.+|.......+...+. .+.+|||||... +...+ ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 45689999999999999999999987642 2345566655555554443 899999999622 22222 23
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeec
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+..+|++++|+|++++.++.....+...+ ......++|+++|+||+|+.+..... .. ......+++++||+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~ 188 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAK 188 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcC
Confidence 56789999999999887776654433333 22233468999999999997543222 11 12234469999999
Q ss_pred CCCCHHHHHHHHHHhh
Q 030008 165 NSTNIDSVIDWLVKHS 180 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l 180 (184)
++.|++++++.|.+.|
T Consensus 189 ~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 189 TGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 9999999999998764
No 131
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.1e-26 Score=150.61 Aligned_cols=169 Identities=33% Similarity=0.623 Sum_probs=145.5
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHcCC---C----CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhcc
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVATGG---Y----SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA 87 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~~~---~----~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 87 (184)
+.+..+.|+++|..++|||||+.+....- + +....+|++.+..++...+..+.+||..|++..+++|..++..
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHH
Confidence 35678999999999999999998876311 1 2346689999999888889999999999999999999999999
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc-CcccCcceeEEEeeecCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL-KSITDREVCCFMISCKNS 166 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~ 166 (184)
++++++++|+++++.++.....+..+.......++|+++.+||.|+.+..+..++...+.. .....+..++.++||.+|
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~g 172 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTG 172 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence 9999999999999999999888888888777788999999999999988887777777763 333455678999999999
Q ss_pred CCHHHHHHHHHHhhhcC
Q 030008 167 TNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 167 ~~v~~l~~~i~~~l~~~ 183 (184)
+||++-.++++..++++
T Consensus 173 egv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 173 EGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccHHHHHHHHHHHHhhc
Confidence 99999999999988764
No 132
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=6.7e-25 Score=161.29 Aligned_cols=153 Identities=19% Similarity=0.135 Sum_probs=106.2
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhh--------HHhHHHHhccCC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF--------RSMWERYCRAVS 89 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~~~~ 89 (184)
+|+++|++|+|||||+|+|++.... ..+.+|..........++.++.+|||||.... ......++.++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999987653 34445555444444556678999999996432 112345678999
Q ss_pred EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 90 AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+..........+... ....+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL---EDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh---cCCCceEEEecCCCCCH
Confidence 999999999876553 222233222 368999999999996432222122222111 11126899999999999
Q ss_pred HHHHHHHHHhhhc
Q 030008 170 DSVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~l~~ 182 (184)
+++++.|.+.+++
T Consensus 153 ~~L~~~l~~~l~~ 165 (270)
T TIGR00436 153 SFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998765
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=7.9e-25 Score=151.78 Aligned_cols=151 Identities=20% Similarity=0.306 Sum_probs=106.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC-------CCCCCCCcc------ceeE----EEE-----EeCcEEEEEEecCCchhhH
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGG-------YSEDMIPTV------GFNM----RKV-----TKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~-------~~~~~~~t~------~~~~----~~~-----~~~~~~~~~~D~~G~~~~~ 78 (184)
+|+++|++++|||||++++++.. ....+.++. +... ..+ ......+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998632 111122211 1111 112 2346789999999999999
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCcccCcc
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---QALTDEMGLKSITDRE 155 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~ 155 (184)
..+..+++.+|++++|+|++++.+......+.. ... .++|+++|+||+|+.+.... +++.+.++. ..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~-----~~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSADPERVKQQIEDVLGL-----DP 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCC-----Cc
Confidence 999999999999999999998766555544332 221 36899999999998643211 222222211 12
Q ss_pred eeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 156 VCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 156 ~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
..++++||++|.|++++++.|.+.++
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999998764
No 134
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=1.7e-24 Score=170.10 Aligned_cols=160 Identities=23% Similarity=0.197 Sum_probs=113.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCch----------hhHHhH-HH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP----------RFRSMW-ER 83 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~-~~ 83 (184)
..++|+++|.+|+|||||+|++++... ...+..|.......+..++..+.+|||||.. .+.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 358999999999999999999997764 2334445555555666777889999999952 222222 23
Q ss_pred HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++.+|++++|+|++++.++.... ++..+.. .++|+++|+||+|+.+....................++++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 578999999999999987776653 2333322 46899999999999753322222222222222223457999999
Q ss_pred cCCCCHHHHHHHHHHhhhc
Q 030008 164 KNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~ 182 (184)
++|.|++++|+.+.+.+++
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987754
No 135
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=1.5e-24 Score=163.72 Aligned_cols=157 Identities=18% Similarity=0.235 Sum_probs=110.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhh-H-------HhHHHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-R-------SMWERYC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-~-------~~~~~~~ 85 (184)
.+..+|+++|++|+|||||+|+|+++.+. +.+.+|.......+..++.++.+|||||.... . ......+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 35579999999999999999999987764 44556666666667777889999999997432 1 1122346
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
..+|++++|+|+.+. +.....++...+.. .+.|.++|+||+|+.+. ...+..+..... .....++++||++
T Consensus 130 ~~aDvil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccC
Confidence 789999999998753 43443333333322 24677899999998643 233333332211 1234699999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++++++.|.+.+++
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999999999998765
No 136
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=8.8e-26 Score=151.01 Aligned_cols=142 Identities=25% Similarity=0.323 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCcEEEEEEecCCchhh------HHhHHHHh--ccCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF------RSMWERYC--RAVS 89 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~--~~~~ 89 (184)
++|+++|+||+|||||+|++++.... ..+..|+......+...+..+.++|+||.... ......++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 58999999999999999999987753 34667888888888888999999999994222 22333333 6789
Q ss_pred EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 90 AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS----KQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++++|+|+++.+.- ......+.. .++|+++|+||+|+..... .+.+.+.+ ++|++++||++
T Consensus 81 ~ii~VvDa~~l~r~---l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--------g~pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNLERN---LYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERL--------GVPVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGHHHH---HHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------TS-EEEEBTTT
T ss_pred EEEEECCCCCHHHH---HHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------CCCEEEEEeCC
Confidence 99999999875322 222333333 3699999999999865332 34444444 34799999999
Q ss_pred CCCHHHHHHHH
Q 030008 166 STNIDSVIDWL 176 (184)
Q Consensus 166 ~~~v~~l~~~i 176 (184)
++|++++.+.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
No 137
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.93 E-value=1.5e-24 Score=162.62 Aligned_cols=160 Identities=20% Similarity=0.215 Sum_probs=117.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCc-EEEEEEecCCchh-------hHHhHHHHhc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPR-------FRSMWERYCR 86 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~-------~~~~~~~~~~ 86 (184)
+--..|+++|.||||||||++++++... ...+++|..+....+...+ ..+.+||+||... ....+..++.
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 3446899999999999999999997543 3445677777777777666 8899999999642 2334455667
Q ss_pred cCCEEEEEEeCCCc---CcHHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEee
Q 030008 87 AVSAIVYVVDAADP---DNLSISRSELHDLLNKP-SLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 87 ~~~~ii~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.++++++|+|+++. +++..+..+..++.... ....+|+++|+||+|+.+....++..+.+.. ....+++++|
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----~~~~~vi~iS 310 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK----ALGKPVFPIS 310 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH----HcCCcEEEEE
Confidence 89999999999876 56666666655554332 1246899999999999754333333333321 1134799999
Q ss_pred ecCCCCHHHHHHHHHHhh
Q 030008 163 CKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l 180 (184)
|++++|++++++.|.+.+
T Consensus 311 Aktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 311 ALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCcCHHHHHHHHHHHh
Confidence 999999999999998865
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=2.6e-24 Score=147.64 Aligned_cols=155 Identities=22% Similarity=0.270 Sum_probs=108.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCC--CccceeEEEEEe---CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMI--PTVGFNMRKVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~--~t~~~~~~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
.|+++|++|+|||||++++....+..... +|.......+.. .+..+.+|||||++.+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999877655432 233333333444 3678999999999999888888889999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHh---HhCcCc--ccCcceeEEEeeecCCCCHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTD---EMGLKS--ITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~Sa~~~~~v~ 170 (184)
|++++...... ..+..+. . .++|+++|+||+|+.... .+.+.. .+.... ......+++++||++|.|++
T Consensus 82 d~~~~~~~~~~-~~~~~~~-~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAK-A---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHHH-HHHHHHH-H---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 99876422221 1122221 1 468999999999986432 122111 111111 11234679999999999999
Q ss_pred HHHHHHHHhhh
Q 030008 171 SVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~l~ 181 (184)
++++.|.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999988754
No 139
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.93 E-value=1.1e-24 Score=152.09 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=113.0
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCC------------------CccceeEEEEEeCcEEEEEEecCCchhhHHhHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMI------------------PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~------------------~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 82 (184)
+|+++|.+|+|||||++++++........ .|.......+......+.+|||||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999999765543321 222333344556678899999999999988888
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH----HHHHhHhCcCcc-------
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK----QALTDEMGLKSI------- 151 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~~~~~~~~~------- 151 (184)
.+++.+|++++|+|+.++..... ...+..... ...|+++|+||+|+...... +.+.+.......
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 99999999999999987654322 222222221 46999999999999763332 222223322111
Q ss_pred --cCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 152 --TDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 152 --~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.....+++++||++|.|++++++.|.+.++.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 2245689999999999999999999998763
No 140
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=2.4e-24 Score=145.77 Aligned_cols=154 Identities=22% Similarity=0.328 Sum_probs=114.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
.+||+++|++|||||||++++..........++.+..... +..++ ..+.+||+||+..+...+....++++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3799999999999999999999888665555555544333 55556 7899999999999988888888899999999
Q ss_pred EeCCCc-CcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADP-DNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|.... .++.... .+...+..... ...|+++|+||+|+............... ....+++++||.++.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHH
Confidence 999766 5555544 44444443332 27899999999999754433333333322 22336999999999999999
Q ss_pred HHHHH
Q 030008 173 IDWLV 177 (184)
Q Consensus 173 ~~~i~ 177 (184)
++.|.
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 98864
No 141
>COG1159 Era GTPase [General function prediction only]
Probab=99.93 E-value=1.8e-24 Score=155.41 Aligned_cols=157 Identities=22% Similarity=0.186 Sum_probs=117.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhH--------HhHHHHhc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR--------SMWERYCR 86 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~ 86 (184)
+.--|+++|.||+|||||+|++++++. ++.+++|.......+..++.++.|+||||...-. ......+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 445789999999999999999998886 5677788888888888889999999999954432 22334568
Q ss_pred cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 87 AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 87 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+|++++|+|+.++.. ...+++...+.. .+.|+++++||+|..+... ...+.+.+... .....++++||++
T Consensus 85 dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~---~~f~~ivpiSA~~ 156 (298)
T COG1159 85 DVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL---LPFKEIVPISALK 156 (298)
T ss_pred cCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh---CCcceEEEeeccc
Confidence 8999999999997532 223333333332 4589999999999987655 23333333322 2223699999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++.|.+.+..+|++
T Consensus 157 g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 157 GDNVDTLLEIIKEYLPE 173 (298)
T ss_pred cCCHHHHHHHHHHhCCC
Confidence 99999999999999875
No 142
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=4.3e-24 Score=161.44 Aligned_cols=151 Identities=23% Similarity=0.299 Sum_probs=109.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEe-CcEEEEEEecCCch---------hhHHhHHHHh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQP---------RFRSMWERYC 85 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~---------~~~~~~~~~~ 85 (184)
..++|+++|.+|+|||||+|++++.... ..+++|.++....+.. ++..+.+|||||.. .+...+ ..+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 3489999999999999999999987642 3467788887777776 56789999999972 222222 347
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.++|++++|+|++++.+......+. .++......++|+++|+||+|+.+... ...... ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l~~~~~piIlV~NK~Dl~~~~~---v~~~~~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVE-KVLEELGAEDIPQLLVYNKIDLLDEPR---IERLEE------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHH-HHHHHhccCCCCEEEEEEeecCCChHh---HHHHHh------CCCCEEEEEccC
Confidence 8899999999999987666554332 222322234689999999999964322 111111 112589999999
Q ss_pred CCCHHHHHHHHHHh
Q 030008 166 STNIDSVIDWLVKH 179 (184)
Q Consensus 166 ~~~v~~l~~~i~~~ 179 (184)
|.|++++++.|...
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998765
No 143
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.93 E-value=1e-23 Score=142.93 Aligned_cols=144 Identities=18% Similarity=0.171 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhhHH--------hHHHHhccC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS--------MWERYCRAV 88 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~ 88 (184)
++|+++|++|+|||||++++++.... ..+..+.......+...+..+.+|||||...... .....+.++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 68999999999999999999976532 2333344444555666678899999999654421 233456789
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|+.++.+......+.. ...+|+++|+||+|+.+.... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998776555432222 256999999999999754332 1223345799999999999
Q ss_pred HHHHHHHHHHhh
Q 030008 169 IDSVIDWLVKHS 180 (184)
Q Consensus 169 v~~l~~~i~~~l 180 (184)
++++++.|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 144
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.4e-25 Score=141.50 Aligned_cols=178 Identities=33% Similarity=0.597 Sum_probs=153.9
Q ss_pred hHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHH
Q 030008 3 LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 82 (184)
.+..+++-|.. .+.+.+++++|--|+||||+..++.-++. ....||++++...+.+++.++++||..|+...+..|.
T Consensus 4 g~~s~f~~L~g--~e~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072|consen 4 GFSSLFKALQG--PEREMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred hHHHHHHHhcC--CccceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCccccccccccceeeEccCcccccHHHH
Confidence 34444444422 24889999999999999999988864433 4667899999999999999999999999999999999
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEee
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
-++.+.+++|||+|.++.+........+..++.........++++.||.|......+.+....++....+...+.+|.+|
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tS 160 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTS 160 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeec
Confidence 99999999999999999988887777777777777777788999999999988888899999998888888889999999
Q ss_pred ecCCCCHHHHHHHHHHhhhcC
Q 030008 163 CKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~~~ 183 (184)
|.+|+|+++..+++.+-+.++
T Consensus 161 A~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 161 AVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccccCCcHHHHHHHHHHhcc
Confidence 999999999999999998875
No 145
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.93 E-value=5.7e-24 Score=165.80 Aligned_cols=147 Identities=18% Similarity=0.242 Sum_probs=111.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHh--------HHHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM--------WERYC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~~~~~ 85 (184)
+..++|+++|.+|+|||||+|++++... ...+.+|.......+..++..+.+|||||....... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 4679999999999999999999997653 334555666666777778889999999997654322 23467
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+++|++++|+|++++.++.....+ .. ..++|+++|+||+|+.+..... .....+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l-~~------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEIL-EE------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHH-Hh------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 889999999999988766643322 22 2468999999999996432221 12234689999999
Q ss_pred CCCHHHHHHHHHHhhh
Q 030008 166 STNIDSVIDWLVKHSK 181 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~ 181 (184)
|.|++++++.|.+.+.
T Consensus 355 g~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 355 GEGIDELREAIKELAF 370 (449)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998775
No 146
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=8.1e-25 Score=154.52 Aligned_cols=160 Identities=25% Similarity=0.298 Sum_probs=103.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCC-----------chhhHHhHHHHhc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG-----------QPRFRSMWERYCR 86 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~~~~ 86 (184)
..++|+++|++|+|||||++++.+..+.....++.......+... .+.+||||| ++.++..+..++.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE 85 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence 468999999999999999999998776544444443333333333 689999999 4566665555543
Q ss_pred ----cCCEEEEEEeCCCcCcHH-H--------HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCc-
Q 030008 87 ----AVSAIVYVVDAADPDNLS-I--------SRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKS- 150 (184)
Q Consensus 87 ----~~~~ii~v~d~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~- 150 (184)
.++++++|+|......+. . ....+...+.. .++|+++|+||+|+.+.. ..+++...++...
T Consensus 86 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 162 (201)
T PRK04213 86 DNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPP 162 (201)
T ss_pred hhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCcc
Confidence 457888999986532210 0 01111222221 368999999999986443 1233333333210
Q ss_pred ccCcceeEEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 151 ITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
......+++++||++| |++++++.|.+.+.+.
T Consensus 163 ~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 163 WRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred ccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 0111135899999999 9999999999987664
No 147
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.92 E-value=1.4e-24 Score=149.98 Aligned_cols=153 Identities=24% Similarity=0.214 Sum_probs=107.5
Q ss_pred EEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeC-cEEEEEEecCCchhh-------HHhHHHHhccCCEEEE
Q 030008 24 LIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPRF-------RSMWERYCRAVSAIVY 93 (184)
Q Consensus 24 i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~-------~~~~~~~~~~~~~ii~ 93 (184)
++|++|+|||||++++.+... ...+.+|.......+... +..+.+|||||.... .......++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998764 334455666666666666 788999999996321 1123445678999999
Q ss_pred EEeCCCc------CcHHHHHHHHHHHhcCCC------CCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEe
Q 030008 94 VVDAADP------DNLSISRSELHDLLNKPS------LSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 94 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
|+|+.++ .++.....+...+..... ...+|+++|+||+|+.......... ..........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999987 456665555555543322 1468999999999997543333221 111122234569999
Q ss_pred eecCCCCHHHHHHHHHHh
Q 030008 162 SCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~ 179 (184)
||+++.|++++++.+...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998765
No 148
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.92 E-value=4.1e-24 Score=149.87 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC----CCC-----CCCCccceeEEEEEeC--------------cEEEEEEecCCchh
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG----YSE-----DMIPTVGFNMRKVTKG--------------NVTIKLWDLGGQPR 76 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~----~~~-----~~~~t~~~~~~~~~~~--------------~~~~~~~D~~G~~~ 76 (184)
++|+++|++|+|||||++++++.. +.. ....|.+.....+... +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 479999999999999999998631 111 1224445444333332 67899999999977
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH----HHHhHhCcCc--
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ----ALTDEMGLKS-- 150 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~~~-- 150 (184)
+..........+|++++|+|+.++........+. +... .+.|+++|+||+|+......+ ++.+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6555555667789999999998764333322111 1111 257999999999987433322 2222111111
Q ss_pred ccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 151 ITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.....++++++||++|.|++++++.|.+.+.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1123567999999999999999999988753
No 149
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.92 E-value=1.1e-24 Score=152.36 Aligned_cols=160 Identities=24% Similarity=0.272 Sum_probs=114.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--------------------CCCCCccceeEEEEE--eCcEEEEEEecCCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--------------------EDMIPTVGFNMRKVT--KGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--------------------~~~~~t~~~~~~~~~--~~~~~~~~~D~~G~ 74 (184)
++..+|+++|+.++|||||+.+|...... ....-|.......+. .....+.++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 35689999999999999999999843321 112345555666666 78899999999999
Q ss_pred hhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC-----cC
Q 030008 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG-----LK 149 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~-----~~ 149 (184)
..+.......+..+|++++|+|+.++-.. ...+.+..... .++|+++|+||+|+... ...+...+.. ..
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~ 154 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----LGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEY 154 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----TT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHT
T ss_pred cceeecccceecccccceeeeeccccccc-ccccccccccc----cccceEEeeeeccchhh-hHHHHHHHHHHHhcccc
Confidence 99998888999999999999999976332 22333333322 46889999999999822 2222222221 11
Q ss_pred cccC-cceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 150 SITD-REVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 150 ~~~~-~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.... ...+++++||.+|.|+++|++.|.+.++.
T Consensus 155 ~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 155 GENGEEIVPVIPISALTGDGIDELLEALVELLPS 188 (188)
T ss_dssp TSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS--
T ss_pred ccCccccceEEEEecCCCCCHHHHHHHHHHhCcC
Confidence 1122 35789999999999999999999998863
No 150
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.92 E-value=1.5e-23 Score=163.65 Aligned_cols=159 Identities=19% Similarity=0.154 Sum_probs=112.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHH-----------hHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS-----------MWERY 84 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----------~~~~~ 84 (184)
.++|+++|.+|+|||||+|++++... ...+.+|.......+..++..+.+|||||..+... ....+
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~ 251 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKA 251 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999997652 23344555555555666777899999999643321 12346
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC-CCCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP-GALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++.+|++++|+|+.++.+..... .+..... .++|+++|+||+|+. +....+++.............++++++||
T Consensus 252 ~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA 326 (429)
T TIGR03594 252 IERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISA 326 (429)
T ss_pred HHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeC
Confidence 78899999999999886655432 2222222 368999999999997 22223344444433333334578999999
Q ss_pred cCCCCHHHHHHHHHHhhhc
Q 030008 164 KNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~ 182 (184)
++|.|++++++.+.+...+
T Consensus 327 ~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 327 LTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999998876543
No 151
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.92 E-value=3e-23 Score=160.99 Aligned_cols=155 Identities=22% Similarity=0.265 Sum_probs=111.8
Q ss_pred HhhcccceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHh--------
Q 030008 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM-------- 80 (184)
Q Consensus 12 ~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-------- 80 (184)
.....++.++|+++|++|+|||||+|++++... ...+.+|.......+..++..+.+|||||+......
T Consensus 196 ~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~ 275 (442)
T TIGR00450 196 KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEK 275 (442)
T ss_pred HHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHH
Confidence 334456789999999999999999999997643 334444555556667778889999999997554322
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEE
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
...+++++|++++|+|++++.++... ++..+.. .++|+++|+||+|+... +.+.+. .....+++.
T Consensus 276 ~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~--------~~~~~~~~~ 340 (442)
T TIGR00450 276 SFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFV--------SSKVLNSSN 340 (442)
T ss_pred HHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhh--------hhcCCceEE
Confidence 33567899999999999988776654 4444321 36899999999998643 222111 112346889
Q ss_pred eeecCCCCHHHHHHHHHHhhhc
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+||++ .|++++++.+.+.+.+
T Consensus 341 vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred EEEec-CCHHHHHHHHHHHHHH
Confidence 99998 5899998888887653
No 152
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=1.1e-26 Score=147.12 Aligned_cols=156 Identities=26% Similarity=0.424 Sum_probs=124.8
Q ss_pred EEcCCCCChHHHHHHHHcCCCCC-CCCCccceeEEE----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCC
Q 030008 24 LIGLQNAGKTSLVNVVATGGYSE-DMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 24 i~G~~~sGKStli~~l~~~~~~~-~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
++|+.++|||+|+-++..+.+-. ...+|+++.++. +....+++++|||+||+++++....+++.+|+.++++|+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 68999999999999888777643 456788876654 3455688999999999999999999999999999999999
Q ss_pred CcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 99 DPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
+..||++...|+.++-.+.. ..+.+.+++||+|+.++ ..+....+....+..++|+.++||++|-|++..|-.|..
T Consensus 82 nkasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~e---r~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~ 157 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHE---RAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAE 157 (192)
T ss_pred cchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchh---hccccchHHHHHHHHCCCceeccccccccHhHHHHHHHH
Confidence 99999999999988765533 45788999999999642 112222222333344558999999999999999999988
Q ss_pred hhhcC
Q 030008 179 HSKSK 183 (184)
Q Consensus 179 ~l~~~ 183 (184)
.+.+.
T Consensus 158 ~l~k~ 162 (192)
T KOG0083|consen 158 ELKKL 162 (192)
T ss_pred HHHHh
Confidence 87654
No 153
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=2e-23 Score=146.66 Aligned_cols=157 Identities=24% Similarity=0.316 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHc--CCCCCCC----------------CCccceeEEEEEeCcEEEEEEecCCchhhHHhH
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT--GGYSEDM----------------IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 81 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~--~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 81 (184)
-+|+++|++++|||||++++++ +.+.... ..|.......+..+...+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999996 3333221 112222334466778899999999999999999
Q ss_pred HHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCc--ccCcce
Q 030008 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---QALTDEMGLKS--ITDREV 156 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~--~~~~~~ 156 (184)
..+++++|++++|+|+.+.. ......++..... .++|+++|+||+|+...... +++...+.... ....++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998742 2223333333322 36899999999999643221 22222221110 122356
Q ss_pred eEEEeeecCCCCH----------HHHHHHHHHhhh
Q 030008 157 CCFMISCKNSTNI----------DSVIDWLVKHSK 181 (184)
Q Consensus 157 ~~~~~Sa~~~~~v----------~~l~~~i~~~l~ 181 (184)
+++++||++|.|+ ++|.+.|.++++
T Consensus 158 ~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (194)
T cd01891 158 PVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred CEEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence 8999999999665 455555555543
No 154
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=3e-24 Score=143.55 Aligned_cols=134 Identities=19% Similarity=0.218 Sum_probs=91.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCch-----hhHHhHHHHhccCCEEEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP-----RFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~-----~~~~~~~~~~~~~~~ii~v~ 95 (184)
||+++|++|+|||||++++.++... +.+|.+.. ... .+|||||+. .+.... ..++++|++++|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-----~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~ 70 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-----YND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQ 70 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-----EcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEe
Confidence 7999999999999999999976542 33343322 222 789999973 233333 3478999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|++++.++... .+ .... ..|+++|+||+|+.+... .++..+.... ....+++++||++|.|++++++
T Consensus 71 d~~~~~s~~~~-~~-~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 71 SATDPESRFPP-GF-ASIF------VKPVIGLVTKIDLAEADVDIERAKELLET----AGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred cCCCCCcCCCh-hH-HHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHH----cCCCcEEEEecCCCCCHHHHHH
Confidence 99998876542 22 2221 249999999999865322 2221111111 1122689999999999999999
Q ss_pred HHH
Q 030008 175 WLV 177 (184)
Q Consensus 175 ~i~ 177 (184)
.+.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 155
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=1e-23 Score=163.93 Aligned_cols=162 Identities=24% Similarity=0.266 Sum_probs=115.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCcEEEEEEecCCchh-------hHHhHHHHhc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-------FRSMWERYCR 86 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~ 86 (184)
++--..|+++|.||||||||+|+|++... ...+++|+.+....+...+..+++||+||... .......++.
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 34457899999999999999999996543 35577888888888888888999999999532 1223445678
Q ss_pred cCCEEEEEEeCCCc----CcHHHHHHHHHHHhcCC----------CCCCCcEEEEeeCCCCCCCCCHH-HHHhHhCcCcc
Q 030008 87 AVSAIVYVVDAADP----DNLSISRSELHDLLNKP----------SLSGIPLLVLGNKIDKPGALSKQ-ALTDEMGLKSI 151 (184)
Q Consensus 87 ~~~~ii~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~ 151 (184)
.++++++|+|+++. +.+..+..+..++..+. ....+|+++|+||+|+.+..... .+...+
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l----- 310 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL----- 310 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----
Confidence 89999999999753 33444333332332221 22468999999999986432221 111111
Q ss_pred cCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 152 TDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
....++++++||+++.|++++++.|.+.+.+
T Consensus 311 ~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 311 EARGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred HHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 1124679999999999999999999988754
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=2.1e-23 Score=164.07 Aligned_cols=154 Identities=18% Similarity=0.177 Sum_probs=108.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchh--------hHHhHHHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~ 85 (184)
....+|+++|.+|+|||||+|++++... ...+..|...........+..+.+|||||.+. +...+..++
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 3457999999999999999999997653 22333344445555666778899999999752 344456678
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+.+|++++|+|++++.+... ..+...+.. .++|+++|+||+|+..... +....+.. ..+ ..+++||++
T Consensus 116 ~~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~----g~~-~~~~iSA~~ 183 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSL----GLG-EPHPVSALH 183 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhc----CCC-CeEEEEcCC
Confidence 89999999999998765432 222223222 4699999999999864321 11111111 111 247899999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++++++.|.+.+.+
T Consensus 184 g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 184 GRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCcHHHHHHHHhhccc
Confidence 99999999999988754
No 157
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.92 E-value=4.2e-24 Score=136.65 Aligned_cols=176 Identities=28% Similarity=0.511 Sum_probs=152.8
Q ss_pred HHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCc-EEEEEEecCCchhhHHhHH
Q 030008 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~~~~~~ 82 (184)
++.++.-.++.. .++++|+++|-.++|||||+.++...+. +...||-+++...+.+++ .++++||.+|+...+..|.
T Consensus 3 l~til~~~ks~t-~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWs 80 (185)
T KOG0074|consen 3 LETILCCCKSRT-RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWS 80 (185)
T ss_pred HHHHHHHhcCCC-cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEEEeecCcEEEEEEecCCccccchhhh
Confidence 455666665554 7899999999999999999999975444 466789999999888766 8999999999999999999
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEee
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.|+.+.|.++||+|.++...|+...+.+-+++...+...+|+.+..||.|+......++......+.......+++-+||
T Consensus 81 NYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~cs 160 (185)
T KOG0074|consen 81 NYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECS 160 (185)
T ss_pred hhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCc
Confidence 99999999999999999888998888888888888778899999999999987777888888888877788889999999
Q ss_pred ecCCCCHHHHHHHHHHhhh
Q 030008 163 CKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~ 181 (184)
|.+++|+.+-.+++....+
T Consensus 161 als~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 161 ALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred cccccCccCcchhhhcCCC
Confidence 9999999988888776654
No 158
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=8.2e-24 Score=143.69 Aligned_cols=147 Identities=24% Similarity=0.229 Sum_probs=103.1
Q ss_pred EEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEEeCcEEEEEEecCCchhhHH------hHHHHh--ccCCEEEE
Q 030008 24 LIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYC--RAVSAIVY 93 (184)
Q Consensus 24 i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~~~~~ii~ 93 (184)
++|.+|+|||||++++.+..... .+..|.......+..++..+.+|||||+..+.. ....++ +.+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999775433 233455555566777778899999999876542 344455 48999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|+.+++... .++..+.. .++|+++|+||+|+.+........+.+ ....+.+++++||.++.|+++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKL----SELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHH----HHhhCCCeEEEEccCCCCHHHHH
Confidence 99998865432 22222222 368999999999996543222111111 11123579999999999999999
Q ss_pred HHHHHhhh
Q 030008 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~l~ 181 (184)
+.+.+.++
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988764
No 159
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=5.9e-23 Score=141.27 Aligned_cols=156 Identities=19% Similarity=0.128 Sum_probs=105.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhh----------H-HhHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF----------R-SMWERY 84 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~----------~-~~~~~~ 84 (184)
.++|+++|++|+|||||++++++.... ..+..+.......+..++..+.+||+||.... . ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 578999999999999999999976532 22333334444445566778999999996432 1 112235
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcceeEEEee
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
+..+|++++|+|+.++.+..... .+..... .+.|+++++||+|+... ...+.+.+............+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLR-IAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHH-HHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 67899999999999886654432 2222211 35899999999999755 23333333333322222345799999
Q ss_pred ecCCCCHHHHHHHHHHh
Q 030008 163 CKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~ 179 (184)
|+++.|++++++.+.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 160
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=8.4e-24 Score=141.92 Aligned_cols=151 Identities=28% Similarity=0.451 Sum_probs=111.5
Q ss_pred EEcCCCCChHHHHHHHHcCCC-CCCCCCccceeEEEEEe----CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCC
Q 030008 24 LIGLQNAGKTSLVNVVATGGY-SEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 24 i~G~~~sGKStli~~l~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
++|++|+|||||++++.+... .....+|. ........ ....+.+||+||+..........++.++++++|+|+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 44444554 33333332 3678999999999888888888889999999999999
Q ss_pred CcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHH
Q 030008 99 DPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLV 177 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
++.++.....++..........++|+++|+||+|+.......... ...........+++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE--LAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH--HHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 988777776663333334445679999999999997654433321 00011123356799999999999999999875
No 161
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=2e-23 Score=141.57 Aligned_cols=146 Identities=21% Similarity=0.183 Sum_probs=101.4
Q ss_pred EEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHH--------hHHHHhccCCEE
Q 030008 23 SLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS--------MWERYCRAVSAI 91 (184)
Q Consensus 23 ~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~~~~i 91 (184)
+++|.+|+|||||++++++... ...+..|...........+..+.+|||||...... .....++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4799999999999999997642 23334444455556666778899999999876433 344567889999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|+|+.++.+.... .+...+.. ...|+++|+||+|+.+.... ....... ...+++++|++++.|+++
T Consensus 81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~~----~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYSL----GFGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHhc----CCCCeEEEecccCCCHHH
Confidence 999999876433322 22222222 35999999999999754322 1111111 111589999999999999
Q ss_pred HHHHHHHhh
Q 030008 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~l 180 (184)
+++.|.+.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998753
No 162
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=4.9e-23 Score=158.26 Aligned_cols=156 Identities=21% Similarity=0.277 Sum_probs=112.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeC-cEEEEEEecCCchh-------hHHhHHHHhccC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPR-------FRSMWERYCRAV 88 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~-------~~~~~~~~~~~~ 88 (184)
-..|+++|.||+|||||++++++... ...+++|..+....+... +..+.+||+||... ....+..++.++
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 34899999999999999999997653 345677888877777665 67899999999532 223344556779
Q ss_pred CEEEEEEeCCCc---CcHHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeee
Q 030008 89 SAIVYVVDAADP---DNLSISRSELHDLLNKP-SLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 89 ~~ii~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++++|+|+++. +++.....+...+..+. ....+|+++|+||+|+.+... .+++.+.+. .+++++||
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA 309 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISA 309 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeC
Confidence 999999999764 45555555555544332 124689999999999843211 112222211 46999999
Q ss_pred cCCCCHHHHHHHHHHhhhc
Q 030008 164 KNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~ 182 (184)
++++|++++++.|.+.+.+
T Consensus 310 ~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 310 LTGQGLDELLYAVAELLEE 328 (424)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 163
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.91 E-value=2.2e-23 Score=147.25 Aligned_cols=160 Identities=15% Similarity=0.136 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC---C--CCCccceeEEEEEe---------------------------------
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE---D--MIPTVGFNMRKVTK--------------------------------- 61 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~---~--~~~t~~~~~~~~~~--------------------------------- 61 (184)
++|+++|+.|+|||||+.++....... . ...|....+..+..
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997442111 0 11111111111111
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 141 (184)
....+.+|||||++.+...+...+..+|++++|+|+.++.........+..+... ...|+++|+||+|+........
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 1267999999999999888888888999999999998742111112222222111 2257999999999975322222
Q ss_pred HHhHhCcCcc--cCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 142 LTDEMGLKSI--TDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 142 ~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
..+....... .....+++++||++|+|++++++.|.+.++.
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 1122211111 1124579999999999999999999987754
No 164
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.91 E-value=8.1e-23 Score=146.08 Aligned_cols=165 Identities=24% Similarity=0.361 Sum_probs=121.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE--e--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT--K--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..++|+++|++|||||||++++.+..+...+.+|.+....... . ...++.+|||+|+++++..+..+...++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 3489999999999999999999999998888888775444322 1 14679999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHH-hHh----------Cc-CcccCcceeEEEe
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALT-DEM----------GL-KSITDREVCCFMI 161 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~-~~~----------~~-~~~~~~~~~~~~~ 161 (184)
|+|..+..+.......+...+........|+++|+||+|+..+....... ... .. .........++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 99999966665555444443333332468999999999997654322111 110 00 0000112238999
Q ss_pred eec--CCCCHHHHHHHHHHhhhc
Q 030008 162 SCK--NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~--~~~~v~~l~~~i~~~l~~ 182 (184)
|++ .+.++++++..+...+.+
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHH
Confidence 999 999999999998887753
No 165
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.91 E-value=7.9e-23 Score=143.75 Aligned_cols=162 Identities=20% Similarity=0.244 Sum_probs=104.0
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EEeCcEEEEEEecCCc----------hhhHHhHHH
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTKGNVTIKLWDLGGQ----------PRFRSMWER 83 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~G~----------~~~~~~~~~ 83 (184)
..+..++|+++|++|+|||||+++++++.+.....++.+..... ....+..+.+|||||. +.+......
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 34456899999999999999999999765433333343322111 1111367999999994 333444444
Q ss_pred Hhcc---CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEE
Q 030008 84 YCRA---VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 84 ~~~~---~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
++.. .+++++|+|+..+.+... .++...+.. .+.|+++++||+|+.+....+............ ...++++
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~-~~~~~~~ 173 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKF-GDDEVIL 173 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHh-cCCceEE
Confidence 5544 367888999887643322 122222222 368999999999997543333322222211111 1457899
Q ss_pred eeecCCCCHHHHHHHHHHhhhc
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+||+++.|++++++.|.+.+.+
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999988765
No 166
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.3e-22 Score=155.09 Aligned_cols=162 Identities=17% Similarity=0.199 Sum_probs=114.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCc-EEEEEEecCCchh-------hHHhHHHHhccC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPR-------FRSMWERYCRAV 88 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~-------~~~~~~~~~~~~ 88 (184)
-..|+++|.||||||||+|++++... +..+++|.......+...+ ..+.++||||... .......++..+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 34899999999999999999997553 4457788888888887665 4599999999643 223344567889
Q ss_pred CEEEEEEeCC---CcCcHHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeec
Q 030008 89 SAIVYVVDAA---DPDNLSISRSELHDLLNKP-SLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 89 ~~ii~v~d~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+++++|+|++ +.+.+.....+...+.... ....+|+++|+||+|+.......+....+... .....+++++||+
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~ 316 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAA 316 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECC
Confidence 9999999998 4445555555555544321 12358999999999987443322222222111 0111258999999
Q ss_pred CCCCHHHHHHHHHHhhhc
Q 030008 165 NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~~ 182 (184)
++.|++++++.|.+.+.+
T Consensus 317 tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CCcCHHHHHHHHHHHhhh
Confidence 999999999999998865
No 167
>PLN00023 GTP-binding protein; Provisional
Probab=99.91 E-value=4.6e-23 Score=151.87 Aligned_cols=119 Identities=19% Similarity=0.404 Sum_probs=100.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEe---------------CcEEEEEEecCCchhhHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTK---------------GNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~---------------~~~~~~~~D~~G~~~~~~ 79 (184)
...+||+++|+.|+|||||++++.++.+...+.+|++... ..+.. ..+.+.+|||+|++++..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 3569999999999999999999999988888888988654 23332 236799999999999999
Q ss_pred hHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCC-----------CCCCcEEEEeeCCCCCC
Q 030008 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPS-----------LSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~iiv~nK~D~~~ 135 (184)
++..++++++++|+|+|+++.+++..+..|+..+..... ...+|+++|+||+|+.+
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 999999999999999999999999999999888765421 13589999999999864
No 168
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.91 E-value=3.1e-24 Score=147.12 Aligned_cols=162 Identities=19% Similarity=0.327 Sum_probs=124.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE---EE-eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VT-KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~---~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+|++++|+..+|||+|+..+..+.++..+.||+--++.. +. ...+.+.+|||+||+.|..++...+.++|++++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 46899999999999999999999999999999998844322 32 455789999999999998877778899999999
Q ss_pred EEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhH--------hCcCcccCcc-eeEEEee
Q 030008 94 VVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDE--------MGLKSITDRE-VCCFMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~--------~~~~~~~~~~-~~~~~~S 162 (184)
||++.+++++.++. .|+.++...+ ++.|+|+|++|.|+.+.... +.+... .+....+..+ ..|++||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999975 5555554443 78999999999999843211 111111 0001111111 4699999
Q ss_pred ecCCCCHHHHHHHHHHhhh
Q 030008 163 CKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~ 181 (184)
|++..|++++|+..+....
T Consensus 161 a~tq~~v~~vF~~a~~~~l 179 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAAL 179 (198)
T ss_pred hhhhCCcHHHHHHHHHHHh
Confidence 9999999999999887754
No 169
>PRK11058 GTPase HflX; Provisional
Probab=99.91 E-value=1.6e-22 Score=156.15 Aligned_cols=153 Identities=22% Similarity=0.247 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCc-EEEEEEecCCchhh--HHhH------HHHhccC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRF--RSMW------ERYCRAV 88 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~--~~~~------~~~~~~~ 88 (184)
.+|+++|.+|+|||||+|++++.... ..+++|.+.....+...+ ..+.+|||||..+. ...+ ...+..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 68999999999999999999976643 345677777766666555 38899999997331 2222 2345889
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCccee-EEEeeecCCC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVC-CFMISCKNST 167 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 167 (184)
|++++|+|++++.++.....+. .++.......+|+++|+||+|+.+.... .... .. .+.+ ++++||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~-~iL~el~~~~~pvIiV~NKiDL~~~~~~-~~~~-~~------~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVN-TVLEEIDAHEIPTLLVMNKIDMLDDFEP-RIDR-DE------ENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHH-HHHHHhccCCCCEEEEEEcccCCCchhH-HHHH-Hh------cCCCceEEEeCCCCC
Confidence 9999999999987666553221 2222222246899999999999643211 1111 10 1112 5889999999
Q ss_pred CHHHHHHHHHHhhh
Q 030008 168 NIDSVIDWLVKHSK 181 (184)
Q Consensus 168 ~v~~l~~~i~~~l~ 181 (184)
|++++++.|.+.+.
T Consensus 349 GIdeL~e~I~~~l~ 362 (426)
T PRK11058 349 GIPLLFQALTERLS 362 (426)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998874
No 170
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.90 E-value=1.8e-22 Score=165.41 Aligned_cols=159 Identities=17% Similarity=0.116 Sum_probs=113.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchh----------hHHh-HHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR----------FRSM-WERY 84 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~-~~~~ 84 (184)
..+|+++|.+|+|||||+|++++... ...+.+|.......+..++..+.+|||||..+ +... ...+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~ 529 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAA 529 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHH
Confidence 48999999999999999999998763 23344555555555667777899999999532 2211 2234
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeec
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++.+|++++|+|++++.+..... .+..+.. .++|+++|+||+|+.+....+.+..............+++++||+
T Consensus 530 i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAk 604 (712)
T PRK09518 530 IERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAK 604 (712)
T ss_pred hhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence 68899999999999887766553 2333322 368999999999997543333333333222222234578999999
Q ss_pred CCCCHHHHHHHHHHhhhc
Q 030008 165 NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~~ 182 (184)
+|.|++++++.+.+.+.+
T Consensus 605 tg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 605 TGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988765
No 171
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3e-23 Score=133.01 Aligned_cols=158 Identities=20% Similarity=0.310 Sum_probs=126.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE----EEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..-++-.++|+-|+|||+|+++|...++...-..|++..+. .++.+..++++|||+|+++++....++++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 45689999999999999999999999988887888885443 35566789999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
.|+|++.+.+..-+..|+.+... ...++..+++++||+|+...-+ -++.. .+..+.+..+.++||++|.|++
T Consensus 89 mvyditrrstynhlsswl~dar~-ltnpnt~i~lignkadle~qrdv~yeeak-----~faeengl~fle~saktg~nve 162 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARN-LTNPNTVIFLIGNKADLESQRDVTYEEAK-----EFAEENGLMFLEASAKTGQNVE 162 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhc-cCCCceEEEEecchhhhhhcccCcHHHHH-----HHHhhcCeEEEEecccccCcHH
Confidence 99999999888888888887644 4457788999999999964322 12211 1223445579999999999999
Q ss_pred HHHHHHHHhh
Q 030008 171 SVIDWLVKHS 180 (184)
Q Consensus 171 ~l~~~i~~~l 180 (184)
+.|-.-...+
T Consensus 163 dafle~akki 172 (215)
T KOG0097|consen 163 DAFLETAKKI 172 (215)
T ss_pred HHHHHHHHHH
Confidence 9876554443
No 172
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=2.3e-22 Score=149.58 Aligned_cols=157 Identities=21% Similarity=0.188 Sum_probs=106.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhhH--------HhHHHHhc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR--------SMWERYCR 86 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~ 86 (184)
+.-.|+++|++|||||||+|++++.... ..+.+|..........++.++.++||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4457999999999999999999977653 233333333333344455789999999964432 23344678
Q ss_pred cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-CCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 87 AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA-LSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 87 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+|++++|+|+.++. .....++...+.. .+.|+++|+||+|+... .........+.. .....+++++||++
T Consensus 84 ~~D~il~vvd~~~~~--~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEKI--GPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCCC--ChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEecCCC
Confidence 899999999998832 2223333333332 36899999999999732 222223333322 12234699999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
+.|++++++.|.+.+++
T Consensus 156 ~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 156 GDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999988754
No 173
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=1.1e-22 Score=153.79 Aligned_cols=149 Identities=21% Similarity=0.196 Sum_probs=113.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchh---------hHHhHHHHhcc
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR---------FRSMWERYCRA 87 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~~~ 87 (184)
..|+++|.||+|||||+|+|+++.. .+.+..|.+..+......+..|.++||+|.+. ...+....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 5799999999999999999998775 46677888888888888888999999999542 23445567899
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+++||+|...+-+. ..+.+..++.. .++|+++|+||+|.... .....+.+++-.. .++++||.+|.
T Consensus 84 ADvilfvVD~~~Git~--~D~~ia~~Lr~---~~kpviLvvNK~D~~~~--e~~~~efyslG~g-----~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGREGITP--ADEEIAKILRR---SKKPVILVVNKIDNLKA--EELAYEFYSLGFG-----EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCCCCCH--HHHHHHHHHHh---cCCCEEEEEEcccCchh--hhhHHHHHhcCCC-----CceEeehhhcc
Confidence 9999999999876332 22333444432 46999999999998622 2222223322211 48999999999
Q ss_pred CHHHHHHHHHHhh
Q 030008 168 NIDSVIDWLVKHS 180 (184)
Q Consensus 168 ~v~~l~~~i~~~l 180 (184)
|+.+|.+.+...+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999987
No 174
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.90 E-value=8.8e-23 Score=138.72 Aligned_cols=142 Identities=20% Similarity=0.228 Sum_probs=93.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCch----hhHHhHHHHhccCCEEEEEEe
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP----RFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~----~~~~~~~~~~~~~~~ii~v~d 96 (184)
+|+++|++|+|||||+|++.+... ...+|.+. ..... .+|||||.. +........++++|++++|+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d 73 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LARKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHG 73 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cCccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEe
Confidence 699999999999999999874431 11122222 11111 269999962 222222344789999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++++++.. .++..+ ....|+++++||+|+.+. ..+.+.+..... ....|++++||++|+|++++++.+
T Consensus 74 ~~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 74 ANDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLET---GFEEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred CCCcccccC--HHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHHHHH
Confidence 998865422 333332 135799999999998542 333323222111 112479999999999999999999
Q ss_pred HHhhhc
Q 030008 177 VKHSKS 182 (184)
Q Consensus 177 ~~~l~~ 182 (184)
.+.+.+
T Consensus 143 ~~~~~~ 148 (158)
T PRK15467 143 ASLTKQ 148 (158)
T ss_pred HHhchh
Confidence 887753
No 175
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=3.5e-22 Score=156.20 Aligned_cols=159 Identities=18% Similarity=0.148 Sum_probs=110.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhh----------H-HhHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF----------R-SMWER 83 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~----------~-~~~~~ 83 (184)
..++|+++|++|+|||||+|++++... ...+..|.......+...+..+.++||||.... . .....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 469999999999999999999996542 223334444444556667788999999995322 1 11234
Q ss_pred HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+++.+|++++|+|+.++.+..... .+..+.. .++|+++|+||+|+.+.....++...+.........++++++||
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence 678899999999999886554432 2222221 36899999999999744333444444433333334568999999
Q ss_pred cCCCCHHHHHHHHHHhhh
Q 030008 164 KNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~ 181 (184)
++|.|++++++.+.+...
T Consensus 327 ~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999877553
No 176
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=3.3e-22 Score=156.10 Aligned_cols=150 Identities=23% Similarity=0.246 Sum_probs=107.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCc--------hhhHHhHHHHhccCC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ--------PRFRSMWERYCRAVS 89 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~--------~~~~~~~~~~~~~~~ 89 (184)
+|+++|++|+|||||+|++++... ...+..|.......+...+..+.+|||||. +.+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 589999999999999999997653 233445555666677778889999999995 344555667789999
Q ss_pred EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 90 AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++++|+|+.++.+... ..+...+.. .++|+++|+||+|..+..... .+.+.. ...+++++||.+|.|+
T Consensus 81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~~--~~~~~l-----g~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAVA--AEFYSL-----GFGEPIPISAEHGRGI 148 (429)
T ss_pred EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCcccccH--HHHHhc-----CCCCeEEEeCCcCCCh
Confidence 9999999987643322 222233322 368999999999986432211 111111 1115899999999999
Q ss_pred HHHHHHHHHhhhc
Q 030008 170 DSVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~l~~ 182 (184)
+++++.+.+.+.+
T Consensus 149 ~~ll~~i~~~l~~ 161 (429)
T TIGR03594 149 GDLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999988754
No 177
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=1.4e-22 Score=153.20 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=121.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhH-----------HhHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR-----------SMWERY 84 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~~~~~ 84 (184)
.++|+++|.||+|||||+|+++++.- .+...+|.......+..++.++.++||+|..+-. ......
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 49999999999999999999997663 4567778888888888999999999999943321 123455
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcceeEEEee
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
+..++++++|+|++.+-+.+.. .+..+ ....+.++++|+||+|+.+. ...++....+.........++++++|
T Consensus 258 I~~a~vvllviDa~~~~~~qD~--~ia~~---i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 258 IERADVVLLVIDATEGISEQDL--RIAGL---IEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred HhhcCEEEEEEECCCCchHHHH--HHHHH---HHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence 6889999999999988433332 22222 22357999999999999875 44556666666555556678999999
Q ss_pred ecCCCCHHHHHHHHHHhhh
Q 030008 163 CKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~ 181 (184)
|++|.|++++++.+....+
T Consensus 333 A~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred ecCCCChHHHHHHHHHHHH
Confidence 9999999999999887654
No 178
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=5.3e-22 Score=155.18 Aligned_cols=148 Identities=21% Similarity=0.231 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchh--------hHHhHHHHhccC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCRAV 88 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~~ 88 (184)
.+|+++|.+|+|||||+|++.+... ...+..|.......+...+..+.+|||||... .......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5799999999999999999997653 23344455566666777788999999999876 233455677899
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|+|+.++.+... .++...+.. .++|+++|+||+|..+. .....+.+... ...++++||.+|.|
T Consensus 82 d~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~lg-----~~~~~~iSa~~g~g 149 (435)
T PRK00093 82 DVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSLG-----LGEPYPISAEHGRG 149 (435)
T ss_pred CEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhcC-----CCCCEEEEeeCCCC
Confidence 99999999987643322 222222222 26899999999997542 11111211111 11378999999999
Q ss_pred HHHHHHHHHHh
Q 030008 169 IDSVIDWLVKH 179 (184)
Q Consensus 169 v~~l~~~i~~~ 179 (184)
++++++.+...
T Consensus 150 v~~l~~~I~~~ 160 (435)
T PRK00093 150 IGDLLDAILEE 160 (435)
T ss_pred HHHHHHHHHhh
Confidence 99999999874
No 179
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=7.6e-22 Score=134.73 Aligned_cols=154 Identities=23% Similarity=0.227 Sum_probs=102.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCccceeEEEEEeCcEEEEEEecCCchhhH--------HhHHHHhcc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR--------SMWERYCRA 87 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~~ 87 (184)
..+|+++|++|+|||||++++.+..... ....+..............+.+|||||..... ......+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999765422 11222222233344556789999999965432 233445788
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhHhCcCcccCcceeEEEeeecCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG-ALSKQALTDEMGLKSITDREVCCFMISCKNS 166 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 166 (184)
+|++++|+|+.++.+ ....++...+.. .+.|+++|+||+|+.. .....+....+... ....+++++|++++
T Consensus 83 ~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~ 154 (168)
T cd04163 83 VDLVLFVVDASEPIG--EGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALKG 154 (168)
T ss_pred CCEEEEEEECCCccC--chHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEeccC
Confidence 999999999998721 122222222222 2589999999999973 33333333333222 22347899999999
Q ss_pred CCHHHHHHHHHHhh
Q 030008 167 TNIDSVIDWLVKHS 180 (184)
Q Consensus 167 ~~v~~l~~~i~~~l 180 (184)
.|++++++.|.+.+
T Consensus 155 ~~~~~l~~~l~~~~ 168 (168)
T cd04163 155 ENVDELLEEIVKYL 168 (168)
T ss_pred CChHHHHHHHHhhC
Confidence 99999999998753
No 180
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.89 E-value=8.8e-22 Score=139.00 Aligned_cols=157 Identities=25% Similarity=0.338 Sum_probs=110.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE----eCcEEEEEEecCCchhhHHhHHHHhccC-CEEEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRAV-SAIVYVV 95 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~G~~~~~~~~~~~~~~~-~~ii~v~ 95 (184)
+|+++|++|||||||+++|.++.+.....++ ........ .....+.+||+||+.+++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988776554443 22222222 2357799999999999999999999998 9999999
Q ss_pred eCCCc-CcHHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCCCCCCCHHHHHhHhC-----------cC------------
Q 030008 96 DAADP-DNLSISRSELHDLLNKP--SLSGIPLLVLGNKIDKPGALSKQALTDEMG-----------LK------------ 149 (184)
Q Consensus 96 d~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~-----------~~------------ 149 (184)
|+.+. .++.....++..++... ....+|+++|+||+|+......+.+.+.+. ..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~ 160 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE 160 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 99987 66777776766654322 225799999999999865433211111110 00
Q ss_pred ----------cc--cCcceeEEEeeecCCC-CHHHHHHHHHH
Q 030008 150 ----------SI--TDREVCCFMISCKNST-NIDSVIDWLVK 178 (184)
Q Consensus 150 ----------~~--~~~~~~~~~~Sa~~~~-~v~~l~~~i~~ 178 (184)
.+ ......++++|+..+. |++++.++|..
T Consensus 161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 00 0124568889998876 69998888764
No 181
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=148.17 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=118.8
Q ss_pred hhcccceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHh--------H
Q 030008 13 SLFFKQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM--------W 81 (184)
Q Consensus 13 ~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~--------~ 81 (184)
...+++.++++++|.||+|||||+|+|.+.+. ++.+.+|.+.....+..+++++.++||+|....... .
T Consensus 211 g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs 290 (454)
T COG0486 211 GKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERA 290 (454)
T ss_pred hhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHH
Confidence 34457889999999999999999999997664 567888999999999999999999999996544332 3
Q ss_pred HHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEe
Q 030008 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
...++++|.+++|+|++.+.+-.... +.. ....++|+++|.||+|+.+....... ....+.+++.+
T Consensus 291 ~~~i~~ADlvL~v~D~~~~~~~~d~~--~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~--------~~~~~~~~i~i 356 (454)
T COG0486 291 KKAIEEADLVLFVLDASQPLDKEDLA--LIE----LLPKKKPIIVVLNKADLVSKIELESE--------KLANGDAIISI 356 (454)
T ss_pred HHHHHhCCEEEEEEeCCCCCchhhHH--HHH----hcccCCCEEEEEechhcccccccchh--------hccCCCceEEE
Confidence 34578999999999999863222211 111 22356999999999999866443222 11122368999
Q ss_pred eecCCCCHHHHHHHHHHhhhc
Q 030008 162 SCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
|+++|+|++.+.+.|.+.+..
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGK 377 (454)
T ss_pred EecCccCHHHHHHHHHHHHhh
Confidence 999999999999999887653
No 182
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.89 E-value=3.9e-22 Score=138.39 Aligned_cols=148 Identities=22% Similarity=0.289 Sum_probs=93.0
Q ss_pred hcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCcEEEEEEecCCch----------hhHHhH
Q 030008 14 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQP----------RFRSMW 81 (184)
Q Consensus 14 ~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~----------~~~~~~ 81 (184)
......++|+++|++|+|||||+|++++..+.....++.+... ..+..+ ..+.+|||||.. .+....
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHH
Confidence 3446789999999999999999999997753333333333211 112222 269999999942 233333
Q ss_pred HHHhc---cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH----HHHHhHhCcCcccCc
Q 030008 82 ERYCR---AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK----QALTDEMGLKSITDR 154 (184)
Q Consensus 82 ~~~~~---~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~ 154 (184)
..+++ .++++++|+|++++-+.... .+...+.. .++|+++|+||+|+.+..+. +++.+.+... ..
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---~~ 163 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---AD 163 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---cC
Confidence 44444 35799999999876443333 12222222 36899999999999754322 2222222221 22
Q ss_pred ceeEEEeeecCCCCHH
Q 030008 155 EVCCFMISCKNSTNID 170 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~ 170 (184)
.++++++||++|+|++
T Consensus 164 ~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 164 DPSVQLFSSLKKTGID 179 (179)
T ss_pred CCceEEEECCCCCCCC
Confidence 3479999999999974
No 183
>PTZ00099 rab6; Provisional
Probab=99.89 E-value=1.5e-22 Score=139.73 Aligned_cols=136 Identities=21% Similarity=0.366 Sum_probs=104.9
Q ss_pred CCCCCCCCCccceeEEE--EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCC
Q 030008 42 GGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKP 117 (184)
Q Consensus 42 ~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~ 117 (184)
+.+...+.+|++..+.. +. .+..++.+|||||++++...+..+++++|++++|+|+++++++..+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 34566778888865532 33 345789999999999999999999999999999999999999999988888876543
Q ss_pred CCCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 118 SLSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 118 ~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
....|+++|+||+|+.+. ...++.... .....+.++++||++|.||+++|+.|.+.+.+.
T Consensus 83 -~~~~piilVgNK~DL~~~~~v~~~e~~~~-----~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 83 -GKDVIIALVGNKTDLGDLRKVTYEEGMQK-----AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred -CCCCeEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 256899999999998642 122222111 112234689999999999999999999988653
No 184
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.89 E-value=5.8e-22 Score=134.19 Aligned_cols=152 Identities=23% Similarity=0.158 Sum_probs=105.3
Q ss_pred EEcCCCCChHHHHHHHHcCCCC-C--CCCCccceeEEEEEeC-cEEEEEEecCCchhhH-------HhHHHHhccCCEEE
Q 030008 24 LIGLQNAGKTSLVNVVATGGYS-E--DMIPTVGFNMRKVTKG-NVTIKLWDLGGQPRFR-------SMWERYCRAVSAIV 92 (184)
Q Consensus 24 i~G~~~sGKStli~~l~~~~~~-~--~~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~~-------~~~~~~~~~~~~ii 92 (184)
++|++|||||||++++.+.... . ....|........... ...+.+||+||..... .....++..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999976443 1 2222333333333333 5689999999966543 34455778999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+|+.+........ +.... .....|+++|+||+|+.......................+++++||.++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999886655543 22222 2247999999999999865554443321222333445668999999999999999
Q ss_pred HHHHHHhh
Q 030008 173 IDWLVKHS 180 (184)
Q Consensus 173 ~~~i~~~l 180 (184)
++.+.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99988753
No 185
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.89 E-value=3.9e-22 Score=139.58 Aligned_cols=157 Identities=16% Similarity=0.098 Sum_probs=102.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC------------------CCCCCccceeEEEEEeCcEEEEEEecCCchhhHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 79 (184)
++++|+++|++++|||||+++|+..... .....|.......+..++..+.++||||+..+..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 3689999999999999999999853100 0122233333344556678899999999998888
Q ss_pred hHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCH-H----HHHhHhCcCcccC
Q 030008 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSK-Q----ALTDEMGLKSITD 153 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~~~ 153 (184)
.....+..+|++++|+|+..+-.. .....+..+.. .++| +|+|+||+|+...... + ++...+.......
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 888888999999999999875321 12222332222 3465 7899999998642221 1 1222222222223
Q ss_pred cceeEEEeeecCCCCH----------HHHHHHHHHh
Q 030008 154 REVCCFMISCKNSTNI----------DSVIDWLVKH 179 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~v----------~~l~~~i~~~ 179 (184)
...+++++||++|.|+ ..|++.|.+.
T Consensus 156 ~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~ 191 (195)
T cd01884 156 DNTPIVRGSALKALEGDDPNKWVKKILELLDALDSY 191 (195)
T ss_pred cCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhC
Confidence 4578999999999874 4566666544
No 186
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.89 E-value=5.2e-22 Score=158.42 Aligned_cols=156 Identities=22% Similarity=0.294 Sum_probs=109.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--ccceeEEEEEeCcE-EEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTKGNV-TIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~-~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
....+|+++|++++|||||++++.+..+.....+ |.......+...+. .+.+|||||++.+..++.+.+..+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 3558999999999999999999998766554332 33333344444333 89999999999999999889999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCc---c-cCcceeEEEeeecCCCCH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS---I-TDREVCCFMISCKNSTNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~Sa~~~~~v 169 (184)
|+|+.++...... ..+.. ....++|+++++||+|+... ..++....+.... . .....+++++||++|+|+
T Consensus 165 VVda~dgv~~qT~-e~i~~----~~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVMPQTI-EAISH----AKAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCCHhHH-HHHHH----HHHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 9999875322221 22221 12246899999999998643 2233333222111 0 112357999999999999
Q ss_pred HHHHHHHHH
Q 030008 170 DSVIDWLVK 178 (184)
Q Consensus 170 ~~l~~~i~~ 178 (184)
+++++.|..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999864
No 187
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.89 E-value=3.3e-22 Score=160.04 Aligned_cols=158 Identities=21% Similarity=0.176 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---CCC--CCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY---SED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~---~~~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.|+++|++++|||||+++|++... +.. ...|+...+..+..++..+.+||+||++.+.......+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 4689999999999999999986432 212 22344455555667778999999999999988888888999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCHHHHHhHhCcCc---ccCcceeEEEeeecCCCCHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSKQALTDEMGLKS---ITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+.++... ...+.+. ++.. .++| +++|+||+|+.+....+.......... ......+++++||++|.|++
T Consensus 81 VDa~~G~~~-qT~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 81 VDADEGVMT-QTGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EECCCCCcH-HHHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 999875311 1222222 1221 2566 999999999975432222221111110 01114689999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|...+..
T Consensus 156 eL~~~L~~l~~~ 167 (581)
T TIGR00475 156 ELKKELKNLLES 167 (581)
T ss_pred hHHHHHHHHHHh
Confidence 999998876653
No 188
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.88 E-value=1e-21 Score=134.29 Aligned_cols=166 Identities=21% Similarity=0.282 Sum_probs=112.8
Q ss_pred HHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCC----CCCCCCccceeEEEEEeCcEEEEEEecCC----------ch
Q 030008 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGY----SEDMIPTVGFNMRKVTKGNVTIKLWDLGG----------QP 75 (184)
Q Consensus 10 ~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~~D~~G----------~~ 75 (184)
.++.........|+++|.+|+|||||||++++++- +..+..|...++..+... +.++|.|| .+
T Consensus 15 ~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 15 DIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred CHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHH
Confidence 34445556678999999999999999999998663 334555555555555433 89999999 33
Q ss_pred hhHHhHHHHhcc---CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCccc
Q 030008 76 RFRSMWERYCRA---VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSIT 152 (184)
Q Consensus 76 ~~~~~~~~~~~~---~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~ 152 (184)
.....+..|++. -.++++++|+..+-. .......+++.+ .++|+++|+||+|++...+..............
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~ 166 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKK 166 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcC
Confidence 445555666643 467899999987632 333334444433 479999999999998765553333333222112
Q ss_pred Cccee--EEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 153 DREVC--CFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 153 ~~~~~--~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
...+. ++..|+.++.|++++.+.|.+.+...
T Consensus 167 ~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 167 PPPDDQWVVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred CCCccceEEEEecccccCHHHHHHHHHHHhhcc
Confidence 22222 78899999999999999999887653
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=2.2e-21 Score=159.05 Aligned_cols=152 Identities=20% Similarity=0.196 Sum_probs=105.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchh--------hHHhHHHHhcc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCRA 87 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~~ 87 (184)
..+|+++|.+|+|||||+|++++... ...+..|..........++..+.+|||||.+. +......++..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 36899999999999999999997653 22233344444444556678899999999653 34455667889
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|++++-. .....+...+.. .++|+++|+||+|+..... .....+... .+ ..+++||.+|.
T Consensus 355 aD~iL~VvDa~~~~~--~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg----~~-~~~~iSA~~g~ 422 (712)
T PRK09518 355 ADAVVFVVDGQVGLT--STDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLG----LG-EPYPISAMHGR 422 (712)
T ss_pred CCEEEEEEECCCCCC--HHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcC----CC-CeEEEECCCCC
Confidence 999999999986522 222333333332 4799999999999864321 111111111 11 25789999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030008 168 NIDSVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~ 182 (184)
|++++++.|.+.+.+
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999988754
No 190
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=1.2e-21 Score=159.94 Aligned_cols=157 Identities=22% Similarity=0.321 Sum_probs=110.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--ccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
.....|+++|+.++|||||+++|....+...... |.......+...+..++||||||++.|..++.+.+..+|++++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILV 367 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLV 367 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEE
Confidence 4568999999999999999999987665443322 33333344556678899999999999999999899999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc---Cc-ccCcceeEEEeeecCCCCHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL---KS-ITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+.++..... ...+.. ....++|+|+++||+|+... ..+.+...+.. .. .....++++++||++|.|++
T Consensus 368 VdAddGv~~qT-~e~i~~----a~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~ 441 (787)
T PRK05306 368 VAADDGVMPQT-IEAINH----AKAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID 441 (787)
T ss_pred EECCCCCCHhH-HHHHHH----HHhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence 99987532111 122221 22246899999999999643 22222222211 10 01123689999999999999
Q ss_pred HHHHHHHHh
Q 030008 171 SVIDWLVKH 179 (184)
Q Consensus 171 ~l~~~i~~~ 179 (184)
++++.|...
T Consensus 442 eLle~I~~~ 450 (787)
T PRK05306 442 ELLEAILLQ 450 (787)
T ss_pred HHHHhhhhh
Confidence 999998753
No 191
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=7.9e-24 Score=140.67 Aligned_cols=159 Identities=21% Similarity=0.346 Sum_probs=130.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..++++++|+.++||||+|+++|.+-+...+-.|++..... +..+++...+||++|++++......+++++.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 45899999999999999999999999988888888855432 34455778899999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
||+-++..+|+....|...+.+.. ..+|.++|-||+|+.+... ..+..... +.....++-+|++...|+..
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~la-----k~l~~RlyRtSvked~NV~~ 171 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLA-----KKLHKRLYRTSVKEDFNVMH 171 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHH-----HHhhhhhhhhhhhhhhhhHH
Confidence 999999999999999999987654 4799999999999975432 12221111 11223478899999999999
Q ss_pred HHHHHHHhhhcC
Q 030008 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~l~~~ 183 (184)
+|.+|...+.++
T Consensus 172 vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 172 VFAYLAEKLTQQ 183 (246)
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 192
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=3.3e-21 Score=154.48 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC-------CCCCCC----------CccceeEEEEEe-----CcEEEEEEecCCchhh
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG-------YSEDMI----------PTVGFNMRKVTK-----GNVTIKLWDLGGQPRF 77 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~-------~~~~~~----------~t~~~~~~~~~~-----~~~~~~~~D~~G~~~~ 77 (184)
-+++++|++++|||||+++|+... +..... .|.......+.+ ..+.+.+|||||+..+
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999998542 111111 122211222322 2378999999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCccee
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVC 157 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
...+..++..+|++++|+|++++.+......+.... . .++|+++|+||+|+.+.. ..+....+.... ......
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-~~~~~~el~~~l-g~~~~~ 156 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-PERVKKEIEEVI-GLDASE 156 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC-HHHHHHHHHHHh-CCCcce
Confidence 999999999999999999999876665554443322 2 358999999999986432 222222221110 111124
Q ss_pred EEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 158 CFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 158 ~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
++++||++|.|++++++.|.+.++.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCCC
Confidence 8999999999999999999988753
No 193
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.88 E-value=6.1e-21 Score=137.23 Aligned_cols=151 Identities=21% Similarity=0.244 Sum_probs=104.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCcEEEEEEecCCchhh-------HHhHHHHhccCCEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVSAI 91 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~~~i 91 (184)
+|+++|++|+|||||++++.+... ...+.+|.......+..++..+.+||+||.... .......++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 689999999999999999997653 233556766777777788899999999996432 22345678999999
Q ss_pred EEEEeCCCcCc-HHHHHHHHH----------------------------------------HHhc---------------
Q 030008 92 VYVVDAADPDN-LSISRSELH----------------------------------------DLLN--------------- 115 (184)
Q Consensus 92 i~v~d~~~~~~-~~~~~~~~~----------------------------------------~~~~--------------- 115 (184)
++|+|+++++. ...+...+. .+++
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999987642 221111111 0100
Q ss_pred ---------CCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 116 ---------KPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 116 ---------~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.....-+|+++|+||+|+.+..+.. . +. . ..+++++||+++.|++++++.|.+.+.
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~---~-~~----~--~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD---L-LA----R--QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH---H-Hh----c--CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0001226899999999997432222 1 11 1 124899999999999999999998764
No 194
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.88 E-value=1.3e-20 Score=126.33 Aligned_cols=157 Identities=24% Similarity=0.361 Sum_probs=124.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC---------CC---CCCCccceeEEEEEeCc-EEEEEEecCCchhhHHhHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY---------SE---DMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~---------~~---~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~~~~~~ 82 (184)
...+.+|++.|+.++||||+++++..... .. ...+|+...+....... ..+.++|||||+++..+|.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 34678999999999999999999996552 11 12356667777776555 8899999999999999999
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEee
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.+++.+.++++++|.+.+..+. ...+..++.... .+|+++++||.|+.+...++.+.+.+.... ...+.++++
T Consensus 87 ~l~~ga~gaivlVDss~~~~~~--a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~ 159 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITFH--AEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEID 159 (187)
T ss_pred HHhCCcceEEEEEecCCCcchH--HHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeee
Confidence 9999999999999999998772 233333443321 299999999999998888887777776543 455799999
Q ss_pred ecCCCCHHHHHHHHHHh
Q 030008 163 CKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~ 179 (184)
|.++++..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccchhHHHHHHHHHhh
Confidence 99999999998887765
No 195
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.88 E-value=2e-21 Score=151.30 Aligned_cols=153 Identities=19% Similarity=0.172 Sum_probs=102.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---------------------------------CCCCCccceeEEEEEeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---------------------------------EDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---------------------------------~~~~~t~~~~~~~~~~~~ 63 (184)
+++++|+++|++++|||||+++|+..... .....|+......+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 67899999999999999999999832110 123445566666777788
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH----
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---- 139 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---- 139 (184)
..+.+|||||++.+.......+..+|++++|+|+.+..++.....+...+.... ...|+++|+||+|+.+....
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHH
Confidence 999999999998887666666788999999999987311211111111122111 12479999999999753211
Q ss_pred --HHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 140 --QALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 140 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+++...+.........++++++||++|+|+++
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 12222222221222246799999999999987
No 196
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.87 E-value=3.4e-22 Score=129.69 Aligned_cols=110 Identities=27% Similarity=0.550 Sum_probs=79.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC--CCC--C--ccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSE--DMI--P--TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~--~~~--~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
||+|+|++|||||||+++|++..... .+. . +..............+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999887761 111 1 22222223333444589999999998887777778999999999
Q ss_pred EeCCCcCcHHHHHHH---HHHHhcCCCCCCCcEEEEeeCCC
Q 030008 95 VDAADPDNLSISRSE---LHDLLNKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~iiv~nK~D 132 (184)
+|+++++++..+..+ +..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999988887444 4444332 24599999999998
No 197
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=2.5e-21 Score=156.82 Aligned_cols=158 Identities=19% Similarity=0.260 Sum_probs=109.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCC--CccceeEEE--EEe--CcEEEEEEecCCchhhHHhHHHHhccCCE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMI--PTVGFNMRK--VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~--~t~~~~~~~--~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 90 (184)
++...|+++|++++|||||+++|....+..... .|....... +.. .+..+.+|||||++.+..++...+..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 466799999999999999999998766543322 222222222 222 35889999999999999999999999999
Q ss_pred EEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC---cc-cCcceeEEEeeecCC
Q 030008 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK---SI-TDREVCCFMISCKNS 166 (184)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~Sa~~~ 166 (184)
+++|+|+.++...... ..+..+ ...++|+|+|+||+|+.... .+.+...+... .. ....++++++||++|
T Consensus 322 aILVVDA~dGv~~QT~-E~I~~~----k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 322 AILIIAADDGVKPQTI-EAINYI----QAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEEECcCCCChhhH-HHHHHH----HhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 9999999875322221 122222 22468999999999997532 22222222111 01 112368999999999
Q ss_pred CCHHHHHHHHHHhh
Q 030008 167 TNIDSVIDWLVKHS 180 (184)
Q Consensus 167 ~~v~~l~~~i~~~l 180 (184)
.|++++++.|....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999987654
No 198
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.87 E-value=5.3e-21 Score=135.62 Aligned_cols=147 Identities=15% Similarity=0.108 Sum_probs=93.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC---------------------------------CCCCccceeEEEEEeCcEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSE---------------------------------DMIPTVGFNMRKVTKGNVTIK 67 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~---------------------------------~~~~t~~~~~~~~~~~~~~~~ 67 (184)
+|+++|++|+|||||+++|+.....- ....|.......+..++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999997422110 022244444455666778999
Q ss_pred EEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--HHHHhH
Q 030008 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK--QALTDE 145 (184)
Q Consensus 68 ~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~ 145 (184)
++||||++.+.......++.+|++++|+|+.++..... ...+ .+.... ...++|+|+||+|+...... ......
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~-~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHS-YILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHH-HHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998887667777889999999999987632111 1111 111111 12467889999998643221 112222
Q ss_pred hCcCc--ccCcceeEEEeeecCCCCHHH
Q 030008 146 MGLKS--ITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 146 ~~~~~--~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+.... ......+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 21110 111234699999999999875
No 199
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.87 E-value=4.6e-21 Score=149.27 Aligned_cols=153 Identities=18% Similarity=0.138 Sum_probs=102.2
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC--CCC-------------------------------CCCCCccceeEEEEEeC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG--GYS-------------------------------EDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~--~~~-------------------------------~~~~~t~~~~~~~~~~~ 62 (184)
.++.++|+++|++++|||||+++|+.. ... .....|+......+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 357899999999999999999999841 111 01223444555566777
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHH--HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSIS--RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK- 139 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~- 139 (184)
+..+.+||+||++.+.......+..+|++++|+|+++++++... ...+ .+.... ...|+++|+||+|+.+....
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~--~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL--GINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc--CCCeEEEEEEChhccCccHHH
Confidence 88999999999998877777777899999999999987533111 1111 111111 23579999999999743221
Q ss_pred -----HHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 140 -----QALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 140 -----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
.++.............++++++||++|.|+++
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 12222221111222346899999999999986
No 200
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.86 E-value=1.2e-20 Score=154.60 Aligned_cols=152 Identities=20% Similarity=0.219 Sum_probs=106.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCcEEEEEEecCCchhhHH---------h-HHHHh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS---------M-WERYC 85 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~---------~-~~~~~ 85 (184)
+.++|+++|+||||||||+|++++.... ..+..|.+.....+..++.++.++||||+..+.. . ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 4578999999999999999999976543 2344455555666777888999999999765431 1 22232
Q ss_pred --ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 86 --RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 86 --~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
..+|++++|+|+++.+.... +...+.+ .++|+++|+||+|+.+........+.+. +..+++++++||
T Consensus 82 ~~~~aD~vI~VvDat~ler~l~---l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA 150 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNLY---LTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVS 150 (772)
T ss_pred hccCCCEEEEEecCCcchhhHH---HHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEe
Confidence 47899999999988653222 2233322 3699999999999864322222112221 123457999999
Q ss_pred cCCCCHHHHHHHHHHhh
Q 030008 164 KNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l 180 (184)
.+|+|++++.+.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999988765
No 201
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=5.8e-20 Score=133.58 Aligned_cols=170 Identities=19% Similarity=0.210 Sum_probs=123.4
Q ss_pred hHHHHHHHHHhhcc-c-ceeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCcEEEEEEecCCc----
Q 030008 3 LWEAFLNWLRSLFF-K-QEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ---- 74 (184)
Q Consensus 3 ~~~~~~~~~~~~~~-~-~~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~---- 74 (184)
++++..++|+++.. . ...+|+|.|.||+|||||++.+++.+. .+++++|.+...+++..+...++++||||.
T Consensus 150 fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP 229 (346)
T COG1084 150 FLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP 229 (346)
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCC
Confidence 45677778887763 3 568999999999999999999997654 568899999999999999999999999992
Q ss_pred --hhh---HHhHHHHhccCCEEEEEEeCCCcC--cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC
Q 030008 75 --PRF---RSMWERYCRAVSAIVYVVDAADPD--NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG 147 (184)
Q Consensus 75 --~~~---~~~~~~~~~~~~~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~ 147 (184)
++. ...+...-.-.++++|++|++..+ +++.-...+.++... .+.|+++|+||+|..+....++......
T Consensus 230 l~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~ 306 (346)
T COG1084 230 LEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVL 306 (346)
T ss_pred hHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHH
Confidence 111 111112223468899999998655 444445556665443 4589999999999986555554444433
Q ss_pred cCcccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 148 LKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
.... .....+++.++.+++.+.+.+...
T Consensus 307 ~~~~----~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 307 EEGG----EEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred hhcc----ccccceeeeehhhHHHHHHHHHHH
Confidence 2211 135778999999999888777665
No 202
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.86 E-value=9.2e-21 Score=146.49 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=104.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCC-----CCCccceeEEEE--------------------Ee------CcEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSED-----MIPTVGFNMRKV--------------------TK------GNVT 65 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~-----~~~t~~~~~~~~--------------------~~------~~~~ 65 (184)
.++++|+++|++++|||||+++|.+...... ...|+...+..+ .. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4679999999999999999999974321110 111111111100 00 1367
Q ss_pred EEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhH
Q 030008 66 IKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDE 145 (184)
Q Consensus 66 ~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~ 145 (184)
+.++|+||++.+...+...+..+|++++|+|+.++.......+.+..+ ... ...|+++|+||+|+.+.....+....
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999888888888999999999999653112222223222 111 13579999999999754222111111
Q ss_pred hCcCcc--cCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 146 MGLKSI--TDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 146 ~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
...... ....++++++||++|+|++++++.|...+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 111111 123568999999999999999999998654
No 203
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.86 E-value=5e-20 Score=132.70 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=108.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC--------C------------CCCCccceeEEEEEeCcEEEEEEecCCchhhHHh
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYS--------E------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~--------~------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (184)
+|+++|++|+|||||+++++..... . ....|.......+..++.++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999853110 0 0111223344556778899999999999999888
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhHhCc---------
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS---KQALTDEMGL--------- 148 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~--------- 148 (184)
+..+++.+|++++|+|+.++... ....++..... .++|+++++||+|+..... .+++...++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 89999999999999999886432 22333333322 3689999999999864211 1111111111
Q ss_pred --------------------------------C---------------cccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 149 --------------------------------K---------------SITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 149 --------------------------------~---------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
. .....-.|++..||.++.|++.|++.|.++++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 0 00112357888899999999999999999876
Q ss_pred c
Q 030008 182 S 182 (184)
Q Consensus 182 ~ 182 (184)
.
T Consensus 236 ~ 236 (237)
T cd04168 236 T 236 (237)
T ss_pred C
Confidence 3
No 204
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=3.9e-20 Score=148.48 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=106.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCC--CCC---------------CCCCccceeEEEEEe-----CcEEEEEEecCCchh
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGG--YSE---------------DMIPTVGFNMRKVTK-----GNVTIKLWDLGGQPR 76 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~--~~~---------------~~~~t~~~~~~~~~~-----~~~~~~~~D~~G~~~ 76 (184)
--+++++|+.++|||||+.+|+... ... ....|.......+.+ +.+.+.+|||||+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3589999999999999999998521 110 011122222222322 357899999999999
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcce
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREV 156 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
+...+..++..+|++++|+|++++........+.. ... .++|+++|+||+|+..... ......+... ......
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~-~~~----~~lpiIvViNKiDl~~a~~-~~v~~ei~~~-lg~~~~ 159 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYL-ALE----NDLEIIPVLNKIDLPAADP-ERVKQEIEDV-IGIDAS 159 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH-HHH----CCCCEEEEEECCCCCcccH-HHHHHHHHHH-hCCCcc
Confidence 99999999999999999999998754444333322 221 3689999999999864322 2222221111 011112
Q ss_pred eEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 157 CCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.++++||++|.|++++++.|.+.++.
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 48999999999999999999988763
No 205
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.86 E-value=1.3e-20 Score=134.52 Aligned_cols=153 Identities=22% Similarity=0.231 Sum_probs=98.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCC----------------Ccc-------cee-----------------EEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMI----------------PTV-------GFN-----------------MRKVT 60 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~----------------~t~-------~~~-----------------~~~~~ 60 (184)
+|+++|+.++|||||++++..+.+..... .|. ++. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999999654432111 011 000 01123
Q ss_pred eCcEEEEEEecCCchhhHHhHHHHhc--cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 61 KGNVTIKLWDLGGQPRFRSMWERYCR--AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~~~~~~~--~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
..+..+.++|+||++.+.......+. .+|++++|+|+..+.... ....+..+ .. .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l-~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLA-LA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHH-HH---cCCCEEEEEECccccCHHH
Confidence 44578999999999998776665554 689999999998764211 12222222 22 3689999999999875433
Q ss_pred HHHHH----hHhCcCc---------------------ccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 139 KQALT----DEMGLKS---------------------ITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 139 ~~~~~----~~~~~~~---------------------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
..+.. +.+.... ......|++.+||.+|+|++++.+.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 32222 2222100 1122358999999999999999987754
No 206
>PRK10218 GTP-binding protein; Provisional
Probab=99.85 E-value=2.2e-20 Score=149.40 Aligned_cols=161 Identities=21% Similarity=0.269 Sum_probs=112.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc--CCCCCCC------------CCccc----eeEEEEEeCcEEEEEEecCCchhhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT--GGYSEDM------------IPTVG----FNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~--~~~~~~~------------~~t~~----~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
++--+|+++|+.++|||||+++++. +.+.... ..+.+ .....+.+++.++.+|||||+..+.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 3456899999999999999999996 2222111 11222 2334456788999999999999999
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCc--ccC
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---QALTDEMGLKS--ITD 153 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~--~~~ 153 (184)
..+..+++.+|++++|+|+.++... .....+..... .++|.++++||+|....... +++...+.... ...
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 9999999999999999999876322 22333333332 36899999999998643222 22222221111 122
Q ss_pred cceeEEEeeecCCC----------CHHHHHHHHHHhhhc
Q 030008 154 REVCCFMISCKNST----------NIDSVIDWLVKHSKS 182 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~----------~v~~l~~~i~~~l~~ 182 (184)
..+|++++||.+|. |+..+++.|.+.++.
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 35789999999998 689999999988763
No 207
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.85 E-value=5.9e-20 Score=147.09 Aligned_cols=157 Identities=22% Similarity=0.297 Sum_probs=112.9
Q ss_pred EEEEEcCCCCChHHHHHHHHcC--CCCCC----------------CCCccceeEEEEEeCcEEEEEEecCCchhhHHhHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG--GYSED----------------MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~--~~~~~----------------~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 82 (184)
+|+++|+.++|||||+.+|+.. .+... ...|+......+.+++.++.+|||||+..+...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7899999999999999999852 22111 12233344455778889999999999999999999
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCcc--cCccee
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---QALTDEMGLKSI--TDREVC 157 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~--~~~~~~ 157 (184)
.+++.+|++++|+|+.++. ......++..... .++|+++|+||+|+...... .++...+..... ....++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 9999999999999998753 3344455554443 36899999999998643221 222222211111 223468
Q ss_pred EEEeeecCCC----------CHHHHHHHHHHhhhc
Q 030008 158 CFMISCKNST----------NIDSVIDWLVKHSKS 182 (184)
Q Consensus 158 ~~~~Sa~~~~----------~v~~l~~~i~~~l~~ 182 (184)
++++||++|. |++.+++.|.+.++.
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 9999999996 799999999988763
No 208
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.85 E-value=3e-20 Score=143.60 Aligned_cols=163 Identities=16% Similarity=0.176 Sum_probs=103.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCC-----CCCCccceeEEEEEe---------------------C-----cE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSE-----DMIPTVGFNMRKVTK---------------------G-----NV 64 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~-----~~~~t~~~~~~~~~~---------------------~-----~~ 64 (184)
.+++++|+++|+.++|||||+.+|.+..... ....|+......... + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 3678999999999999999999996421111 111233222111000 0 25
Q ss_pred EEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHh
Q 030008 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTD 144 (184)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~ 144 (184)
.+.+|||||++.+..........+|++++|+|+.++.........+..+ ... ...|+++|+||+|+.+.........
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 7999999999988777777777889999999999653111111222222 111 1247899999999975433221111
Q ss_pred HhCcCc--ccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 145 EMGLKS--ITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 145 ~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.+.... ......+++++||++|.|++++++.|.+.+.
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 111111 0123467999999999999999999998765
No 209
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.85 E-value=1.4e-20 Score=134.53 Aligned_cols=147 Identities=20% Similarity=0.144 Sum_probs=96.1
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC--C-------------------------------CCCCCccceeEEEEEeCcEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY--S-------------------------------EDMIPTVGFNMRKVTKGNVTIK 67 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~--~-------------------------------~~~~~t~~~~~~~~~~~~~~~~ 67 (184)
+|+++|++++|||||+.+|+.... . .....|.......+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999873210 0 0112233344555677889999
Q ss_pred EEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCc------HHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC-C--
Q 030008 68 LWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDN------LSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL-S-- 138 (184)
Q Consensus 68 ~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~-- 138 (184)
++||||+..+...+...+..+|++++|+|+.++.. .......+... .. ...+|+++|+||+|+.... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCCeEEEEEEccccccccccHH
Confidence 99999998887777777888999999999987521 11112222211 11 1236899999999997321 1
Q ss_pred -HHHHHhHh----CcCcccCcceeEEEeeecCCCCHH
Q 030008 139 -KQALTDEM----GLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 139 -~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
.+++...+ .........++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 22222222 111122235789999999999986
No 210
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=2.2e-20 Score=149.84 Aligned_cols=144 Identities=22% Similarity=0.205 Sum_probs=98.4
Q ss_pred cCCCCChHHHHHHHHcCCCCCCC--CCccceeEEEEEeCcEEEEEEecCCchhhHHh------HHHHh--ccCCEEEEEE
Q 030008 26 GLQNAGKTSLVNVVATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM------WERYC--RAVSAIVYVV 95 (184)
Q Consensus 26 G~~~sGKStli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------~~~~~--~~~~~ii~v~ 95 (184)
|++|+|||||+|++++....... ..|.+.....+..++.++.+|||||+.++... ...++ ..+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999987654333 33444555556677788999999998765432 23332 4689999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|+++.+.. ..+...+.+ .++|+++|+||+|+.+........+.+ .+..+.+++++||++|+|++++++.
T Consensus 81 Dat~ler~---l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L----~~~lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 81 DASNLERN---LYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKL----EERLGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred cCCcchhh---HHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHH----HHHcCCCEEEEECCCCCCHHHHHHH
Confidence 99875432 222222322 368999999999986432221111111 1122457999999999999999999
Q ss_pred HHHhh
Q 030008 176 LVKHS 180 (184)
Q Consensus 176 i~~~l 180 (184)
+.+.+
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98753
No 211
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.85 E-value=2.1e-20 Score=149.16 Aligned_cols=156 Identities=18% Similarity=0.233 Sum_probs=101.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCC----CCccceeEEEEE----------------eCcEEEEEEecCCchhhH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDM----IPTVGFNMRKVT----------------KGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~----~~t~~~~~~~~~----------------~~~~~~~~~D~~G~~~~~ 78 (184)
..-|+++|++++|||||++++.+..+.... ..+++....... .....+.+|||||++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 346899999999999999999976654322 222232221111 011248899999999999
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--------------HHHHH-
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--------------KQALT- 143 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--------------~~~~~- 143 (184)
.++..+++.+|++++|+|++++...... ..+. .+.. .++|+++++||+|+.+... ...+.
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~-e~i~-~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQ-EALN-ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHH-HHHH-HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 9999999999999999999874322221 1111 1111 3689999999999964210 00000
Q ss_pred -------------hHhCcCc-------ccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 144 -------------DEMGLKS-------ITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 144 -------------~~~~~~~-------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
...+... ......+++++||++|+|++++.+.|...
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 1111110 11234689999999999999999988653
No 212
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.84 E-value=1.1e-19 Score=124.28 Aligned_cols=152 Identities=21% Similarity=0.225 Sum_probs=96.4
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCcEEEEEEecCCchh----------hHHhHHHHhc--
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQPR----------FRSMWERYCR-- 86 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~~----------~~~~~~~~~~-- 86 (184)
.|+++|++|+|||||++++.++.......++.+... ..+..+ ..+.++|+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 379999999999999999996554433333333221 122222 3899999999432 3333444443
Q ss_pred -cCCEEEEEEeCCCcCcHHH--HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc-cCcceeEEEee
Q 030008 87 -AVSAIVYVVDAADPDNLSI--SRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI-TDREVCCFMIS 162 (184)
Q Consensus 87 -~~~~ii~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 162 (184)
+.+++++++|.....+... +..++.. ...|+++|+||+|+.+................ .....+++++|
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 3578899999986632222 2222222 24899999999999654333322222221111 23345789999
Q ss_pred ecCCCCHHHHHHHHHHhh
Q 030008 163 CKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l 180 (184)
|+++.|++++++.|.+.+
T Consensus 153 a~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 153 SLKGQGIDELRALIEKWL 170 (170)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998764
No 213
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.84 E-value=3.1e-20 Score=149.25 Aligned_cols=156 Identities=18% Similarity=0.205 Sum_probs=104.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC---CCC--CCCccceeEEEEEe-CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY---SED--MIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~---~~~--~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
-|+++|++++|||||+++|++... ... ...|+...+..+.. ++..+.+||+||++.+.......+..+|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 478999999999999999985332 211 23454444444433 345689999999999987777888999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCHHHHHhHhCcCcc--cCcceeEEEeeecCCCCHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSKQALTDEMGLKSI--TDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+.++-. ....+.+. ++.. .++| +++|+||+|+.+....+.....+..... .....+++++||++|+|+++
T Consensus 82 Vda~eg~~-~qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 82 VACDDGVM-AQTREHLA-ILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99987521 11222222 2222 2345 6899999999753322222222221111 11235799999999999999
Q ss_pred HHHHHHHhhh
Q 030008 172 VIDWLVKHSK 181 (184)
Q Consensus 172 l~~~i~~~l~ 181 (184)
+++.|.+...
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999987654
No 214
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.84 E-value=9.1e-20 Score=119.54 Aligned_cols=135 Identities=20% Similarity=0.264 Sum_probs=92.4
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCC----chhhHHhHHHHhccCCEEEEEEe
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----QPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G----~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
||+++|+.|||||||+++|.+.... +..|-.. .+. =.++|||| ++.+...+.....++|.+++|.|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i-----~~~---~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAI-----EYY---DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCcccee-----Eec---ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 7899999999999999999864442 2222221 111 14599999 44555555666678999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC-CCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP-GALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
++++.+.-. ..+ .....+|+|=|+||+|+. +....+...+.+...... .+|.+|+.+|+|+++|.++
T Consensus 73 at~~~~~~p--P~f------a~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 73 ATEPRSVFP--PGF------ASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred CCCCCccCC--chh------hcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHH
Confidence 998743211 111 122468999999999998 333444444444333222 4799999999999999988
Q ss_pred HH
Q 030008 176 LV 177 (184)
Q Consensus 176 i~ 177 (184)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 215
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=4e-20 Score=121.52 Aligned_cols=175 Identities=34% Similarity=0.564 Sum_probs=140.6
Q ss_pred hHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHH
Q 030008 3 LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~ 82 (184)
||...++.+= ..++.=|++++|-.|+|||||++.+.+... ....||..+....+..++..|+-+|.+|+...+..+.
T Consensus 6 wF~~VLq~Lg--L~kK~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wk 82 (193)
T KOG0077|consen 6 WFSSVLQFLG--LYKKFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWK 82 (193)
T ss_pred HHHHHHHHHH--HhccCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCChHHheecCceEEEEccccHHHHHHHHH
Confidence 5666666664 236788999999999999999998875544 3677888888888889999999999999999999999
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc------------Cc
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL------------KS 150 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~------------~~ 150 (184)
.++..++++++.+|+.+.+.+......++.++........|+++.+||+|.......+++...... ..
T Consensus 83 dyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~ 162 (193)
T KOG0077|consen 83 DYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTD 162 (193)
T ss_pred HHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccC
Confidence 999999999999999999999999888888887766678999999999999876665555544332 11
Q ss_pred ccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 151 ITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
........+-||...+.|-.+-|.++.+++
T Consensus 163 ~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 163 SNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred CCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 223345678899999888777777666543
No 216
>PRK12736 elongation factor Tu; Reviewed
Probab=99.84 E-value=5.7e-20 Score=141.60 Aligned_cols=161 Identities=16% Similarity=0.117 Sum_probs=106.9
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCC------------------CCCCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
.+++++|+++|++++|||||+++|++.... .....|+......+..++..+.++||||++.+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 467899999999999999999999852110 01222333433445456678999999999988
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCHH-----HHHhHhCcCcc
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSKQ-----ALTDEMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~~-----~~~~~~~~~~~ 151 (184)
.......+..+|++++|+|+.++... ...+.+..+.. .++| +|+++||+|+.+..+.. ++...+.....
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 77777777889999999999875321 12222322222 2577 67899999987432221 12222211222
Q ss_pred cCcceeEEEeeecCCC--------CHHHHHHHHHHhhh
Q 030008 152 TDREVCCFMISCKNST--------NIDSVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~l~ 181 (184)
.....+++++||++|. +++++++.+.+.++
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2234689999999983 68888888887764
No 217
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.2e-19 Score=141.67 Aligned_cols=151 Identities=22% Similarity=0.260 Sum_probs=111.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEEeCcEEEEEEecCCchhh------HHhHHHHh--cc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF------RSMWERYC--RA 87 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~------~~~~~~~~--~~ 87 (184)
+..+|+++|+||+|||||+|++++..... -+..|++-....+..++.++.++|+||.-.. .....+++ .+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 35679999999999999999999766544 4556777888888899999999999994332 22233343 45
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA----LSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
.|+++-|+|+++.+.--.+.-.+.+ .++|++++.|++|..+. .+.+++.+.+ ++|++++||
T Consensus 82 ~D~ivnVvDAtnLeRnLyltlQLlE-------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L--------GvPVv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLTLQLLE-------LGIPMILALNMIDEAKKRGIRIDIEKLSKLL--------GVPVVPTVA 146 (653)
T ss_pred CCEEEEEcccchHHHHHHHHHHHHH-------cCCCeEEEeccHhhHHhcCCcccHHHHHHHh--------CCCEEEEEe
Confidence 6999999999987543333322222 36899999999998643 2344444444 457999999
Q ss_pred cCCCCHHHHHHHHHHhhhcC
Q 030008 164 KNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~~ 183 (184)
++|.|++++.+.+.+..+++
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 147 KRGEGLEELKRAIIELAESK 166 (653)
T ss_pred ecCCCHHHHHHHHHHhcccc
Confidence 99999999999998765543
No 218
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.83 E-value=1.1e-19 Score=131.34 Aligned_cols=156 Identities=21% Similarity=0.309 Sum_probs=113.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCc-EEEEEEecCCchh-------hHHhHHHHhc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPR-------FRSMWERYCR 86 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~-------~~~~~~~~~~ 86 (184)
+--..|.++|.||+|||||++++.+.+. ....++|+.+....+.+++ ..+++-|.||.-+ ....+-.++.
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence 3446789999999999999999997554 5567888888888877766 4499999999432 3445667788
Q ss_pred cCCEEEEEEeCCCc---CcHHHHHHHHHHHhc-CCCCCCCcEEEEeeCCCCCCCCCH--HHHHhHhCcCcccCcceeEEE
Q 030008 87 AVSAIVYVVDAADP---DNLSISRSELHDLLN-KPSLSGIPLLVLGNKIDKPGALSK--QALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 87 ~~~~ii~v~d~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 160 (184)
.|+..++|+|++.+ +.++.+...+.++-. .....+.|.++|+||+|+.+.... +++.+..... .+++
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~p 346 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVP 346 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEE
Confidence 99999999999987 555555544444322 233356899999999999632211 3333333221 5999
Q ss_pred eeecCCCCHHHHHHHHHHh
Q 030008 161 ISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~ 179 (184)
+||++++|++++++.|...
T Consensus 347 vsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 347 VSAKSGEGLEELLNGLREL 365 (366)
T ss_pred eeeccccchHHHHHHHhhc
Confidence 9999999999999887653
No 219
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.83 E-value=1.4e-20 Score=122.47 Aligned_cols=162 Identities=23% Similarity=0.377 Sum_probs=125.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
.++|.++|++..|||||+-++.++.+...+..|.+.+... ++....-|.+||.+|++++..+++...+.+-+++++
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 5899999999999999999999888876666777755433 334456789999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--HHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK--QALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
||++.++++..+.+|+....+. ....+| |+|+||-|..-.-.+ ++-........++.-.++.++||+.+..|++.+
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~-NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KI 177 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGL-NKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKI 177 (205)
T ss_pred EecCchHHHHHHHHHHHHHhcc-CCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHH
Confidence 9999999999999999987543 224466 567999997432222 222222222333444567999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
|+.+...+.+
T Consensus 178 FK~vlAklFn 187 (205)
T KOG1673|consen 178 FKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHhC
Confidence 9998887654
No 220
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.83 E-value=2.2e-19 Score=131.43 Aligned_cols=112 Identities=28% Similarity=0.329 Sum_probs=79.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC--CCC----------------------CCCccceeEEEEEeCcEEEEEEecCCch
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY--SED----------------------MIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~--~~~----------------------~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (184)
-+|+++|++|+|||||+++++.... ... ...++......+.+++.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4799999999999999999984211 100 0112223344577888999999999999
Q ss_pred hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
++.......++.+|++++|+|+.++... .....+. ... ..++|+++++||+|....
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~-~~~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFE-VCR---LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHH-HHH---hcCCCEEEEEECCccCCC
Confidence 9888778888999999999999876322 1222232 222 246899999999997543
No 221
>PRK12735 elongation factor Tu; Reviewed
Probab=99.83 E-value=9e-20 Score=140.59 Aligned_cols=160 Identities=17% Similarity=0.141 Sum_probs=105.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC-----CCC-------------CCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG-----GYS-------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~-----~~~-------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
++.++|+++|++++|||||+++|++. ... .....|+......+..++..+.++||||++.+.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 67899999999999999999999852 000 011223333333445566789999999999887
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCCCCCH-H----HHHhHhCcCccc
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL-VLGNKIDKPGALSK-Q----ALTDEMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+.++.. ......+..+.. .++|.+ +++||+|+.+..+. + ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 777777889999999999987532 222233332221 357755 57999999743221 1 121222111111
Q ss_pred CcceeEEEeeecCCC----------CHHHHHHHHHHhhh
Q 030008 153 DREVCCFMISCKNST----------NIDSVIDWLVKHSK 181 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~----------~v~~l~~~i~~~l~ 181 (184)
....+++++||.+|. ++.++++.|.+.++
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 124689999999984 68889988887653
No 222
>CHL00071 tufA elongation factor Tu
Probab=99.83 E-value=1.1e-19 Score=140.65 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=104.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC------------------CCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
++.++|+++|++++|||||+++|++.... .....|+......+..++..+.++||||+..+.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 67899999999999999999999953110 001223333333455567789999999999887
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCH-H----HHHhHhCcCccc
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSK-Q----ALTDEMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+..+.. ......+..+.. .++| +|+++||+|+.+.... + ++...+......
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 777788889999999999986532 122222322221 3577 7789999999753221 1 222222222122
Q ss_pred CcceeEEEeeecCCCC------------------HHHHHHHHHHhh
Q 030008 153 DREVCCFMISCKNSTN------------------IDSVIDWLVKHS 180 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~------------------v~~l~~~i~~~l 180 (184)
....+++++||.+|++ +..+++.|.+.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~ 210 (409)
T CHL00071 165 GDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI 210 (409)
T ss_pred CCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC
Confidence 2347899999999863 466777766554
No 223
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.82 E-value=3.5e-19 Score=128.22 Aligned_cols=162 Identities=22% Similarity=0.239 Sum_probs=109.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchh------h------HHhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR------F------RSMW 81 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~------~------~~~~ 81 (184)
.+.++|+++|.||+|||||.|++.+.+.. +...+|.......+..+..++.|+||||... . ....
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 35689999999999999999999988764 4555666677778888899999999999211 1 1123
Q ss_pred HHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-----------------HHHHHh
Q 030008 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-----------------KQALTD 144 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-----------------~~~~~~ 144 (184)
...+.++|++++++|+++...... .+.+..+-.+ ..+|-++|+||.|...... ..++.+
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 345788999999999996421111 1112222112 3588899999999754211 112222
Q ss_pred HhCcCcc---------cCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 145 EMGLKSI---------TDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 145 ~~~~~~~---------~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.+..... ..+.-.+|.+||++|+||+++.++|...+..
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 2222110 0112248999999999999999999987764
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=2e-19 Score=138.68 Aligned_cols=159 Identities=17% Similarity=0.139 Sum_probs=102.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC-----CC-------------CCCCCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG-----GY-------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~-----~~-------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
.+++++|+++|+.++|||||+++|+.. .. ......|+......+..++..+.++||||++.|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 478899999999999999999999732 00 011233444444445556778999999999998
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCCCCCH-H----HHHhHhCcCcc
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL-VLGNKIDKPGALSK-Q----ALTDEMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~~~~~~-~----~~~~~~~~~~~ 151 (184)
.......+..+|++++|+|+.++... ...+.+..+.. .++|.+ +|+||+|+.+.... + ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 77777777889999999999875322 22233332222 246654 68999998753221 1 12222222111
Q ss_pred cCcceeEEEeeecCCC--------CHHHHHHHHHHh
Q 030008 152 TDREVCCFMISCKNST--------NIDSVIDWLVKH 179 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~ 179 (184)
....++++++||.+|. ++.++++.|.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~ 199 (394)
T TIGR00485 164 PGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEY 199 (394)
T ss_pred CccCccEEECccccccccCCchhHhHHHHHHHHHhc
Confidence 2223689999999875 345566665543
No 225
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.82 E-value=4.4e-19 Score=128.74 Aligned_cols=151 Identities=23% Similarity=0.242 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC--CCCCCCCccceeEEEEEeCcEEEEEEecCCchhh-------HHhHHHHhccCCE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG--YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~~~ 90 (184)
-+|+++|.|++|||||++++++.. ....+++|.......+.+++..++++|+||.-.- .......+++||+
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADl 143 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADL 143 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCE
Confidence 689999999999999999999754 4567889999999999999999999999983221 3446667899999
Q ss_pred EEEEEeCCCcCc-HHHHHHH------------------------------------------------------------
Q 030008 91 IVYVVDAADPDN-LSISRSE------------------------------------------------------------ 109 (184)
Q Consensus 91 ii~v~d~~~~~~-~~~~~~~------------------------------------------------------------ 109 (184)
+++|+|+..+.. .+.+...
T Consensus 144 IiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~d 223 (365)
T COG1163 144 IIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRED 223 (365)
T ss_pred EEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecC
Confidence 999999986653 2221111
Q ss_pred -----HHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 110 -----LHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 110 -----~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
+.+.+.... .=+|.++|.||.|+......+.+.+.. ..+++||..+.|++++.+.|++.+.
T Consensus 224 vTlDd~id~l~~nr-vY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 224 VTLDDLIDALEGNR-VYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred CcHHHHHHHHhhcc-eeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 222222211 127999999999998643333333332 4899999999999999999999874
No 226
>PLN03126 Elongation factor Tu; Provisional
Probab=99.81 E-value=6.5e-19 Score=137.87 Aligned_cols=147 Identities=15% Similarity=0.122 Sum_probs=98.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC------------------CCCCCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY------------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
.++.++|+++|++++|||||+++|+.... ......|+......+..++..+.++|+||++.+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 36789999999999999999999984210 111122333334445567788999999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCH-H----HHHhHhCcCcc
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSK-Q----ALTDEMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~ 151 (184)
.......+..+|++++|+|+.++.. ....+.+..... .++| +++++||+|+.+..+. + ++...+.....
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 8888888889999999999987632 222333333222 3567 7889999999753221 2 22222222222
Q ss_pred cCcceeEEEeeecCCC
Q 030008 152 TDREVCCFMISCKNST 167 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~ 167 (184)
.....+++++|+.+|.
T Consensus 233 ~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 233 PGDDIPIISGSALLAL 248 (478)
T ss_pred CcCcceEEEEEccccc
Confidence 2346789999999875
No 227
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.81 E-value=8.3e-19 Score=140.44 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=100.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCC----CccceeEEEEEe---------C-------cEEEEEEecCCchhh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMI----PTVGFNMRKVTK---------G-------NVTIKLWDLGGQPRF 77 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~----~t~~~~~~~~~~---------~-------~~~~~~~D~~G~~~~ 77 (184)
....|+++|++++|||||++++.+........ .+++........ . ...+.+|||||++.+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 45679999999999999999998654322211 233322211110 0 012789999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCc---CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--------------HH
Q 030008 78 RSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--------------KQ 140 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--------------~~ 140 (184)
..++...+..+|++++|+|++++ +++..+. +... .++|+++++||+|+..... ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 98888888999999999999873 3333322 1111 3689999999999852111 00
Q ss_pred H-----------HHhHhCcCc----------ccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 141 A-----------LTDEMGLKS----------ITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 141 ~-----------~~~~~~~~~----------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
. +...+.... ......+++++||.+|+|++++++.+...
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 0 111111111 01234689999999999999999887653
No 228
>PRK00049 elongation factor Tu; Reviewed
Probab=99.81 E-value=5.1e-19 Score=136.37 Aligned_cols=159 Identities=16% Similarity=0.112 Sum_probs=105.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC------------------CCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
++.++|+++|++++|||||+++|++.... .....|+......+..++..+.++||||+..+.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 67899999999999999999999852110 012223333334454567789999999999887
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCCCCCH-H----HHHhHhCcCccc
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL-VLGNKIDKPGALSK-Q----ALTDEMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|+..+.. ......+..+.. .++|.+ +++||+|+.+.... + ++...+......
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777778899999999999987532 122222222221 357876 58999999742221 1 222222221122
Q ss_pred CcceeEEEeeecCCC----------CHHHHHHHHHHhh
Q 030008 153 DREVCCFMISCKNST----------NIDSVIDWLVKHS 180 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~----------~v~~l~~~i~~~l 180 (184)
....+++++||.++. |+..+++.|.+.+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 235789999999875 5778888888755
No 229
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.81 E-value=6.4e-19 Score=123.96 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=94.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccce-----eEEEEEe-CcEEEEEEecCCchhhHHhH-----HHHhcc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGF-----NMRKVTK-GNVTIKLWDLGGQPRFRSMW-----ERYCRA 87 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~-----~~~~~~~-~~~~~~~~D~~G~~~~~~~~-----~~~~~~ 87 (184)
.++|+++|++|+|||||+|++++.........+.+. ....+.. ....+.+||+||........ ...+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 378999999999999999999975543322222221 0111111 12468999999965322111 122567
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---------HHHHHhHhCcCcc----c--
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS---------KQALTDEMGLKSI----T-- 152 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---------~~~~~~~~~~~~~----~-- 152 (184)
+|+++++.|.. +......+...+.. .+.|+++|+||+|+..... .+++.+.+..... .
T Consensus 81 ~d~~l~v~~~~----~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISSTR----FSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCCC----CCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 78888875432 33343333333333 2589999999999853211 1222222221111 1
Q ss_pred CcceeEEEeeec--CCCCHHHHHHHHHHhhhcC
Q 030008 153 DREVCCFMISCK--NSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 153 ~~~~~~~~~Sa~--~~~~v~~l~~~i~~~l~~~ 183 (184)
....+++.+|+. .+.|+..+.+.|...|++.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 123468899998 5789999999999988753
No 230
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.81 E-value=9.9e-19 Score=124.49 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=98.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCC---------------------CCccceeEEEE-----EeCcEEEEEEecCCc
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDM---------------------IPTVGFNMRKV-----TKGNVTIKLWDLGGQ 74 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~---------------------~~t~~~~~~~~-----~~~~~~~~~~D~~G~ 74 (184)
+|+++|++++|||||+++|+........ ..+.......+ ......+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999864332110 00111111112 123478999999999
Q ss_pred hhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-------CCHH-------
Q 030008 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA-------LSKQ------- 140 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~-------~~~~------- 140 (184)
..+......++..+|++++|+|+.+..+... ..++..... .+.|+++|+||+|+... ...+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~ 156 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIID 156 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHH
Confidence 9998888888999999999999987765432 222333222 34899999999997521 0011
Q ss_pred HHHhHhCcCcc------cCcceeEEEeeecCCCCHH--------HHHHHHHHhhh
Q 030008 141 ALTDEMGLKSI------TDREVCCFMISCKNSTNID--------SVIDWLVKHSK 181 (184)
Q Consensus 141 ~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~--------~l~~~i~~~l~ 181 (184)
++......... ......+++.|++.++++. ++++.|.+.++
T Consensus 157 ~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 157 EVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 11111111100 1112237789999998877 77777776654
No 231
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.80 E-value=2.5e-18 Score=126.50 Aligned_cols=110 Identities=21% Similarity=0.230 Sum_probs=79.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC--C------------------CCCCccceeEEEEEeCcEEEEEEecCCchhhHHh
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYS--E------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~--~------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (184)
+|+++|++|+|||||+++++..... . ....++......+..++.++.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999743211 0 0122333344556677889999999999888888
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+...+..+|++++|+|+.++..... ...+.... ..++|.++++||+|...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~----~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFAD----EAGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHH----HcCCCEEEEEECCccCC
Confidence 8889999999999999988654322 22222221 24689999999999764
No 232
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.80 E-value=9.8e-19 Score=137.25 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=98.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC--CC---------------------------------CCCCccceeEEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY--SE---------------------------------DMIPTVGFNMRKVT 60 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~--~~---------------------------------~~~~t~~~~~~~~~ 60 (184)
.++.++|+++|++++|||||+++|+...- .. ...-|+......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 36779999999999999999999983221 00 01112333444455
Q ss_pred eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-
Q 030008 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALS- 138 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~- 138 (184)
.++..+.++||||++.+.......+..+|++++|+|+..+-...... ..+...+. ..|+|+++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg-----~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG-----IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC-----CCceEEEEEeeccccchhH
Confidence 67789999999999988766666679999999999998653111111 11111111 257899999999974322
Q ss_pred -HHHHHhHhCcCcc--c-CcceeEEEeeecCCCCHHHH
Q 030008 139 -KQALTDEMGLKSI--T-DREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 139 -~~~~~~~~~~~~~--~-~~~~~~~~~Sa~~~~~v~~l 172 (184)
..++...+..... . ....+++++||++|+|++++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1222222211000 0 22467999999999999764
No 233
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.80 E-value=1.2e-18 Score=127.68 Aligned_cols=111 Identities=21% Similarity=0.192 Sum_probs=81.1
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC--C------------------CCCCCccceeEEEEEeCcEEEEEEecCCchhhHHh
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY--S------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~--~------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (184)
+|+++|++|+|||||+++++.... . .....|+......+..++.++.++||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999973111 0 11222344445567778899999999999988888
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
+...++.+|++++|+|+.++.... ....+.... ..++|+++++||+|+...
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~----~~~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQAD----RYNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHH----HcCCCEEEEEECCCCCCC
Confidence 889999999999999998763222 122233222 246899999999998743
No 234
>COG2262 HflX GTPases [General function prediction only]
Probab=99.80 E-value=8.7e-18 Score=125.74 Aligned_cols=155 Identities=24% Similarity=0.332 Sum_probs=113.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeC-cEEEEEEecCCch---------hhHHhHHHHh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQP---------RFRSMWERYC 85 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~D~~G~~---------~~~~~~~~~~ 85 (184)
.-..|.++|-.|+|||||+|++++... .+..+.|..+..+.+... +..+.+-||.|.- .|.+..+. .
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE-~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE-V 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH-h
Confidence 457999999999999999999996554 356788999888888866 5789999999932 23333333 4
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
..+|+++.|+|++++.....+.. ...++.......+|+|+|.||+|+.............. . ..+++||++
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~-------~-~~v~iSA~~ 340 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS-------P-NPVFISAKT 340 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC-------C-CeEEEEecc
Confidence 67899999999999964444433 23334444445699999999999875543111111111 1 489999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|+|++.|.+.|...+..
T Consensus 341 ~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 341 GEGLDLLRERIIELLSG 357 (411)
T ss_pred CcCHHHHHHHHHHHhhh
Confidence 99999999999988763
No 235
>PLN03127 Elongation factor Tu; Provisional
Probab=99.80 E-value=1.8e-18 Score=134.73 Aligned_cols=161 Identities=17% Similarity=0.135 Sum_probs=104.7
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC------CC------------CCCCCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG------GY------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~------~~------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
.+++++|+++|++++|||||+++|.+. .. ......|+......+..++.++.++||||++.+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 467899999999999999999999721 10 011233555555556667788999999999988
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCH-HHHHhHhCc----Ccc
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSK-QALTDEMGL----KSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~~~~~~~~~----~~~ 151 (184)
.......+..+|++++|+|+.++... ...+.+..+ .. .++| +|+++||+|+.+.... +.+..++.. ...
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~-~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLA-RQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHH-HH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 77766777789999999999875321 122222222 21 3578 5788999999753221 112112111 111
Q ss_pred cCcceeEEEeeec---CCCC-------HHHHHHHHHHhhh
Q 030008 152 TDREVCCFMISCK---NSTN-------IDSVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~---~~~~-------v~~l~~~i~~~l~ 181 (184)
.....+++++|+. +|.| +.+|++.|.+.++
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 1234678888876 4555 7888888887664
No 236
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.80 E-value=3.6e-18 Score=133.13 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=101.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC---------------------------------CCCCCCccceeEEEEEeC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY---------------------------------SEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~---------------------------------~~~~~~t~~~~~~~~~~~ 62 (184)
.+++++|+++|+.++|||||+.+|+..-. ......|+......+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 36789999999999999999998873110 001122333444556677
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCc---H---HHHHHHHHHHhcCCCCCCC-cEEEEeeCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDN---L---SISRSELHDLLNKPSLSGI-PLLVLGNKIDKPG 135 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~-~~iiv~nK~D~~~ 135 (184)
+..++++|+||++.|.......+..+|++++|+|+.++.- + ....+.+..... .++ ++|+++||+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~~ 159 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDATT 159 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCCc
Confidence 8899999999999999888899999999999999987421 1 223333332211 245 5788999999762
Q ss_pred CC-C-------HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 136 AL-S-------KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 136 ~~-~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
.. . .+++...++........++++++||.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 11 1 122222222222223346899999999999853
No 237
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.79 E-value=3.3e-18 Score=139.04 Aligned_cols=161 Identities=14% Similarity=0.064 Sum_probs=103.0
Q ss_pred HHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCC-------------C----------------------CCCc
Q 030008 7 FLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSE-------------D----------------------MIPT 51 (184)
Q Consensus 7 ~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~-------------~----------------------~~~t 51 (184)
+..++.....++.++|+++|++++|||||+++|+.....- . ...|
T Consensus 12 ~~~~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~T 91 (632)
T PRK05506 12 ILAYLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGIT 91 (632)
T ss_pred HHHHHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcC
Confidence 4455655566788999999999999999999998432110 0 1112
Q ss_pred cceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 030008 52 VGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 131 (184)
+......+..++.++.++||||++.+.......+..+|++++|+|+..+..... ...+... ... ...++++|+||+
T Consensus 92 id~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~-~~~--~~~~iivvvNK~ 167 (632)
T PRK05506 92 IDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIA-SLL--GIRHVVLAVNKM 167 (632)
T ss_pred ceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHH-HHh--CCCeEEEEEEec
Confidence 223334455677789999999999887666667889999999999976532111 1111111 111 136789999999
Q ss_pred CCCCCCC--HHHHHhHhCcC--cccCcceeEEEeeecCCCCHHH
Q 030008 132 DKPGALS--KQALTDEMGLK--SITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 132 D~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+.+... .+++...+... .......+++++||++|.|+++
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 9974222 12222222110 0111335799999999999874
No 238
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.79 E-value=3.9e-18 Score=135.02 Aligned_cols=115 Identities=23% Similarity=0.288 Sum_probs=81.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc--CCCC---------CCC-------------CCccceeEEEEEeCcEEEEEEecC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT--GGYS---------EDM-------------IPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~--~~~~---------~~~-------------~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+..+|+++|++++|||||.++|+. +... ... ..++......+.+++..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999973 1110 000 111222334567788999999999
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
|+..+.......++.+|++++|+|+.++... .....+... ...++|+++++||+|....
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCccccc
Confidence 9999988888888999999999999876322 222333222 2257999999999998643
No 239
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.79 E-value=1.4e-18 Score=126.99 Aligned_cols=162 Identities=21% Similarity=0.261 Sum_probs=112.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCC--CCCCCCCccceeEEEEEe-CcEEEEEEecCCchh-------hHHhHHHHhccC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGG--YSEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR-------FRSMWERYCRAV 88 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~--~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-------~~~~~~~~~~~~ 88 (184)
-..|.++|.||+|||||++++...+ +..++++|+-++...++. ....|++-|.||.-+ .....-.++.++
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 3567899999999999999999644 567888999888877775 445599999999332 244566778899
Q ss_pred CEEEEEEeCCCcCc---HHHHHHHHHHHhcC-CCCCCCcEEEEeeCCCCCC-CCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 89 SAIVYVVDAADPDN---LSISRSELHDLLNK-PSLSGIPLLVLGNKIDKPG-ALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 89 ~~ii~v~d~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
.++++|+|++..+. .+.......++-.+ .....+|.++|+||+|... ....+++.+.+...... .....+||
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~---~~~~~ISa 315 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGW---EVFYLISA 315 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCC---Ccceeeeh
Confidence 99999999985542 33333333333222 3345789999999999543 33344444444322111 11222999
Q ss_pred cCCCCHHHHHHHHHHhhhcC
Q 030008 164 KNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~~ 183 (184)
.+++|++++...+.+.+.+.
T Consensus 316 ~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 316 LTREGLDELLRALAELLEET 335 (369)
T ss_pred hcccCHHHHHHHHHHHHHHh
Confidence 99999999999998887653
No 240
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.79 E-value=5.1e-18 Score=132.30 Aligned_cols=152 Identities=15% Similarity=0.136 Sum_probs=101.7
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCC--CC-------------------------------CCCCCccceeEEEEEeC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGG--YS-------------------------------EDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~--~~-------------------------------~~~~~t~~~~~~~~~~~ 62 (184)
.+++++|+++|+.++|||||+.+|+..- .. .....|+......+..+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 3678999999999999999999987411 00 01122333444556677
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCc---H---HHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCC-
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDN---L---SISRSELHDLLNKPSLSGIP-LLVLGNKIDKP- 134 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~- 134 (184)
+..+.++|+||+++|.......+..+|++++|+|+..+.- + ....+.+..... .++| +|+++||+|..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence 8899999999999998888888899999999999987531 1 122333332221 3555 77999999953
Q ss_pred -CC--CCHH----HHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 135 -GA--LSKQ----ALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 135 -~~--~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+. ...+ ++...+.........++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 22 1122 2222222222223357899999999999864
No 241
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.79 E-value=5.4e-19 Score=136.55 Aligned_cols=162 Identities=18% Similarity=0.207 Sum_probs=124.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+.+||+++|+.|+||||||-++....+.+...+-..... ..+.-+.+..+++|++..+..+......+++++++++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 46789999999999999999999998888766555444322 2233345668999999888888888888999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPS--LSGIPLLVLGNKIDKPGALSK---QALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++++++++++.+...|..++.+.. ...+|+|+|+||+|..+.... .++...+....+.+ .+++|||++..+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiE---tciecSA~~~~n 162 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIE---TCIECSALTLAN 162 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHH---HHHhhhhhhhhh
Confidence 9999999999999988888887644 246899999999998754332 22333333332222 489999999999
Q ss_pred HHHHHHHHHHhh
Q 030008 169 IDSVIDWLVKHS 180 (184)
Q Consensus 169 v~~l~~~i~~~l 180 (184)
+.++|..-..++
T Consensus 163 ~~e~fYyaqKaV 174 (625)
T KOG1707|consen 163 VSELFYYAQKAV 174 (625)
T ss_pred hHhhhhhhhhee
Confidence 999998766553
No 242
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.1e-17 Score=114.65 Aligned_cols=162 Identities=27% Similarity=0.359 Sum_probs=117.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhc---cCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR---AVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~---~~~~ii~ 93 (184)
.+.-.|+++|+.+||||+|+-++.++... ...+++..+...+..++....++|.||+.+.+.....+++ ++.+++|
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~-~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHR-GTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCcc-CeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 44578999999999999999999977543 4445555666667777777999999999999988888876 7899999
Q ss_pred EEeCC-CcCcHHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc----------------------
Q 030008 94 VVDAA-DPDNLSISRSELHDLLNKP--SLSGIPLLVLGNKIDKPGALSKQALTDEMGL---------------------- 148 (184)
Q Consensus 94 v~d~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---------------------- 148 (184)
|+|.. .........+++..++... ...++|++++.||.|+......+.+.+.+..
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 99995 3445566666666665544 3567899999999999654443222211110
Q ss_pred ---------C----cccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 149 ---------K----SITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 149 ---------~----~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
. ........+.++|++++ +++++.++|.+++
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 0 00013356888999998 7999999988754
No 243
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.2e-18 Score=130.34 Aligned_cols=154 Identities=21% Similarity=0.224 Sum_probs=105.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC---------------------------------CCCCCCCCccceeEEEEEeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG---------------------------------GYSEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~---------------------------------~~~~~~~~t~~~~~~~~~~~~ 63 (184)
+++++++++|++.+|||||+.+|+.+ +..++..-|+......+..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 67899999999999999999998811 112233445555666677788
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHH----HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSIS----RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~ 139 (184)
+.++++|+||+..|-......+.++|+.++|+|+.+++-...+ ...-..++... ..-..+|+++||+|..++.+.
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t-lGi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART-LGIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh-cCCceEEEEEEcccccccCHH
Confidence 8999999999988887777788899999999999987421111 00111111111 123678999999999875432
Q ss_pred --HHHHhHhC----cCcccCcceeEEEeeecCCCCHHH
Q 030008 140 --QALTDEMG----LKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 140 --~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+++..+.. .........+|+++|+.+|+|+.+
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 22222222 233334457899999999998764
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.78 E-value=9.1e-18 Score=129.86 Aligned_cols=148 Identities=15% Similarity=0.106 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--C---------------------------------CCCCccceeEEEEEeCcE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS--E---------------------------------DMIPTVGFNMRKVTKGNV 64 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~--~---------------------------------~~~~t~~~~~~~~~~~~~ 64 (184)
++|+++|++++|||||+.+|+...-. . ...-|+......+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999998732110 0 011133344445666778
Q ss_pred EEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--HHH
Q 030008 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK--QAL 142 (184)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~ 142 (184)
.+.++||||++.+.......+..+|++++|+|+..+.... ..+.+... ... ...++++++||+|+.+.... ++.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~-~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIA-SLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHH-HHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 9999999999999777777888999999999998653211 11111111 111 13468999999999753221 112
Q ss_pred HhHhCcCc--ccCcceeEEEeeecCCCCHHH
Q 030008 143 TDEMGLKS--ITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 143 ~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
...+.... ......+++++||++|+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 22221100 111245799999999999885
No 245
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.78 E-value=1.4e-17 Score=118.52 Aligned_cols=109 Identities=23% Similarity=0.221 Sum_probs=76.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC--CCC----------------CCCccceeEEEEEe----------CcEEEEEEecC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY--SED----------------MIPTVGFNMRKVTK----------GNVTIKLWDLG 72 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~--~~~----------------~~~t~~~~~~~~~~----------~~~~~~~~D~~ 72 (184)
+|+++|+.++|||||+.+|+.... ... ..-|+......+.+ ....+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999984321 000 01122211112222 26789999999
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
|++.+......+++.+|++++|+|+.++..... ...+..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999998754433 222232222 357999999999975
No 246
>PRK13351 elongation factor G; Reviewed
Probab=99.77 E-value=1.8e-17 Score=135.99 Aligned_cols=115 Identities=25% Similarity=0.243 Sum_probs=87.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC--------C------------CCCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY--------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~--------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
.+..+|+++|+.|+|||||+++|+.... . .....|+......+...+..+.+|||||+..
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 4567999999999999999999984210 0 0123355555566778889999999999999
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
+...+..+++.+|++++|+|+.++...... ..+..+.. .++|+++|+||+|+...
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 988899999999999999999987654433 22232222 36899999999998753
No 247
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.77 E-value=7.2e-18 Score=131.24 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=104.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCC-----CCCccceeEEE-----------------EE--------------
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSED-----MIPTVGFNMRK-----------------VT-------------- 60 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~-----~~~t~~~~~~~-----------------~~-------------- 60 (184)
..+++|+++|+...|||||+.+|++...... ..-|+...+.. ..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4679999999999999999999995332111 01111111110 00
Q ss_pred --eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 61 --KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 61 --~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
.....+.++|+||++.+.......+..+|++++|+|+.++.......+.+... ... ...++|+|+||+|+.+...
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~l--gi~~iIVvlNKiDlv~~~~ 188 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDLVKEAQ 188 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHc--CCCcEEEEEecccccCHHH
Confidence 00246899999999999888778888999999999998742112222333221 111 1257899999999975333
Q ss_pred HHHHHhHhCcCc--ccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 139 KQALTDEMGLKS--ITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 139 ~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
..+....+.... ......+++++||++|+|++.|++.|.+.++
T Consensus 189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 222222222111 1124568999999999999999999997665
No 248
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.8e-17 Score=127.63 Aligned_cols=157 Identities=22% Similarity=0.304 Sum_probs=110.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCC--CccceeEEEEEe---CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMI--PTVGFNMRKVTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~--~t~~~~~~~~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...-|+++|+..-|||||+..+-......... -|-.+-...+.. +...++|.||||++.|..+..+-..-+|+++
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 34568999999999999999997655433221 122222333333 3468999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc----cCcceeEEEeeecCCCC
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI----TDREVCCFMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|+.++- .....+.+.+.+..+.|++++.||+|+.+. .+.....+...... ......++++||++|+|
T Consensus 84 LVVa~dDGv-----~pQTiEAI~hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 84 LVVAADDGV-----MPQTIEAINHAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEccCCc-----chhHHHHHHHHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 999999862 111222233344468999999999999854 33333333332221 12346799999999999
Q ss_pred HHHHHHHHHHhh
Q 030008 169 IDSVIDWLVKHS 180 (184)
Q Consensus 169 v~~l~~~i~~~l 180 (184)
+++|++.+.-..
T Consensus 158 i~eLL~~ill~a 169 (509)
T COG0532 158 IDELLELILLLA 169 (509)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 249
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.76 E-value=4.2e-17 Score=106.06 Aligned_cols=164 Identities=15% Similarity=0.264 Sum_probs=119.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeE-EEEEeC---cEEEEEEecCCchhh-HHhHHHHhccC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNM-RKVTKG---NVTIKLWDLGGQPRF-RSMWERYCRAV 88 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~-~~~~~~---~~~~~~~D~~G~~~~-~~~~~~~~~~~ 88 (184)
+-+..+|+++|..++|||+++.++..+... ....+|++-.+ ..+..+ ...+.++||.|-... ..+-..++.-+
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 357789999999999999999999865543 34556666433 333322 246899999997766 55566677888
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
|++++|||..+++||..+.-.-..+-+....+.+|+++.+||.|..+.-. ..........+......+++++.+...
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~---vd~d~A~~Wa~rEkvkl~eVta~dR~s 162 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE---VDMDVAQIWAKREKVKLWEVTAMDRPS 162 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchh---cCHHHHHHHHhhhheeEEEEEeccchh
Confidence 99999999999999988765555555555666799999999999964322 111222222233344689999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030008 169 IDSVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~l~~ 182 (184)
+=+.|..+...+.+
T Consensus 163 L~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 163 LYEPFTYLASRLHQ 176 (198)
T ss_pred hhhHHHHHHHhccC
Confidence 99999998887654
No 250
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.76 E-value=4.1e-17 Score=105.34 Aligned_cols=104 Identities=24% Similarity=0.274 Sum_probs=73.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhh---------HHhHHHHhccC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF---------RSMWERYCRAV 88 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~~~~ 88 (184)
+|+++|.+|+|||||+|+|++... ...+..|....+..+...+..+.++||||.... .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 689999999999999999997532 344566666766667778889999999994321 11233344889
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNK 130 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 130 (184)
|++++|+|+.++.. ......+..+ + ..+|+++|+||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 99999999877321 1122222333 1 57999999998
No 251
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=4.1e-17 Score=124.24 Aligned_cols=167 Identities=16% Similarity=0.144 Sum_probs=112.6
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhh---------HHhHH
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF---------RSMWE 82 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~ 82 (184)
.++..++|+++|+||+|||||+|+|.+.+. ++.+.+|.+.....++.+++++.+.||+|..+. -....
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 346789999999999999999999997764 456667777777788899999999999995541 11233
Q ss_pred HHhccCCEEEEEEeCCCc--CcHHHHHHHHHHHhc-----CCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCc
Q 030008 83 RYCRAVSAIVYVVDAADP--DNLSISRSELHDLLN-----KPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDR 154 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~ 154 (184)
..+.++|++++|+|+... ++...+...+...-. -..+.+.+++++.||+|+...... ......+... .-..
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~ 422 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRS 422 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCc
Confidence 456889999999999433 333333333333211 122345799999999999754221 1111111111 1111
Q ss_pred cee-EEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 155 EVC-CFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~~-~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
..+ ..++|+++++|+++|...+...+..
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 223 4459999999999999998877653
No 252
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=5e-18 Score=114.09 Aligned_cols=157 Identities=20% Similarity=0.349 Sum_probs=127.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE---eC-cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT---KG-NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~---~~-~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..++++++|..|.||||+..+...+.+...+.+|++....... .. ...|..|||.|++.+.....-++=+..++++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 4689999999999999999999999999999999997766532 22 3789999999999998887777777899999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
++|+...-+..++..|..++...+ .++|+++++||.|......... .. ..-.-..+.++++||+++.|.+.-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~k---~v--~~~rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKAK---PV--SFHRKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccccccc---cc--eeeecccceeEEeecccccccccch
Confidence 999999988889999999887654 4699999999999864431111 11 1122234579999999999999999
Q ss_pred HHHHHhhh
Q 030008 174 DWLVKHSK 181 (184)
Q Consensus 174 ~~i~~~l~ 181 (184)
-++.+.+.
T Consensus 162 l~LarKl~ 169 (216)
T KOG0096|consen 162 LWLARKLT 169 (216)
T ss_pred HHHhhhhc
Confidence 99888764
No 253
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.76 E-value=1.9e-18 Score=118.21 Aligned_cols=121 Identities=24% Similarity=0.312 Sum_probs=76.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE--eCcEEEEEEecCCchhhHHhHHHH---hccCCEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT--KGNVTIKLWDLGGQPRFRSMWERY---CRAVSAIV 92 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~D~~G~~~~~~~~~~~---~~~~~~ii 92 (184)
+.-.|+++|+.|||||+|+.+|.++.......+. ........ .....+.++|+||+++.+...... ..++.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 3457899999999999999999988554333332 33222111 134579999999999998765554 78899999
Q ss_pred EEEeCCC-cCcHHHHHHHHHHHhcCC--CCCCCcEEEEeeCCCCCCCCCH
Q 030008 93 YVVDAAD-PDNLSISRSELHDLLNKP--SLSGIPLLVLGNKIDKPGALSK 139 (184)
Q Consensus 93 ~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~iiv~nK~D~~~~~~~ 139 (184)
||+|+.. ........+++.+++... ....+|++|++||.|+......
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~ 130 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPP 130 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---H
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCH
Confidence 9999974 344555666665554332 2356899999999999765443
No 254
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.76 E-value=3.9e-17 Score=133.87 Aligned_cols=114 Identities=20% Similarity=0.162 Sum_probs=83.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--------C------------CCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--------E------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--------~------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
.+-.+|+++|++++|||||+++|+..... . ....|+......+..++..+.++||||+..
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 34469999999999999999999732110 0 122344445556777889999999999998
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+.......+..+|++++|+|+.++...... ..+.... ..++|+++++||+|+..
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQAN----RYEVPRIAFVNKMDKTG 141 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHH----HcCCCEEEEEECCCCCC
Confidence 888888889999999999999876443322 2222222 23689999999999874
No 255
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.75 E-value=5.5e-17 Score=114.13 Aligned_cols=160 Identities=13% Similarity=0.015 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCC----CCCccceeEEEEEeCcEEEEEEecCCchhh-------HHhHH----HH
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSED----MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWE----RY 84 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~----~~ 84 (184)
++|+++|.+|+|||||+|++++...... ...|...........+..+.++||||.... ..... ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999997654322 234555566666667889999999994332 11111 22
Q ss_pred hccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC----cCcccCcceeEE
Q 030008 85 CRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG----LKSITDREVCCF 159 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 159 (184)
..+.|++++|+++.+.. ......+++...+.. ..-.++++|+|++|.......+++..... ...... +-.++
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c-~~r~~ 157 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKC-GGRYV 157 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHh-CCeEE
Confidence 35679999999997621 122223334443331 12268899999999876544333322221 111111 11243
Q ss_pred Eee-----ecCCCCHHHHHHHHHHhhhc
Q 030008 160 MIS-----CKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~S-----a~~~~~v~~l~~~i~~~l~~ 182 (184)
..+ +.++.++++|++.|.+.+.+
T Consensus 158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 158 AFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 333 55678999999999998875
No 256
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.75 E-value=7.1e-17 Score=127.96 Aligned_cols=114 Identities=21% Similarity=0.279 Sum_probs=80.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc-CCC-CC------C----------------CCCccceeEEEEEeCcEEEEEEecC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT-GGY-SE------D----------------MIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~-~~~-~~------~----------------~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+..+|+++|++++|||||+++++. .+. .. . ...++......+.+++..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 5667999999999999999999863 111 00 0 0111222334566788999999999
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
|+..+.......+..+|++++|+|+.+.-. .....++. .... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence 999888877888899999999999987521 12223332 2222 4689999999999853
No 257
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.74 E-value=2e-16 Score=118.10 Aligned_cols=155 Identities=22% Similarity=0.266 Sum_probs=98.2
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEE------------------------eCcEEEEEEecCCc-
Q 030008 22 LSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVT------------------------KGNVTIKLWDLGGQ- 74 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~------------------------~~~~~~~~~D~~G~- 74 (184)
|+++|.||+|||||+|++++.... ..+++|..+...... ....++++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999977643 234455554433221 13367999999996
Q ss_pred ---hhhHH---hHHHHhccCCEEEEEEeCCCc-------------CcHHHH---HHH-----------------------
Q 030008 75 ---PRFRS---MWERYCRAVSAIVYVVDAADP-------------DNLSIS---RSE----------------------- 109 (184)
Q Consensus 75 ---~~~~~---~~~~~~~~~~~ii~v~d~~~~-------------~~~~~~---~~~----------------------- 109 (184)
++... .....++++|++++|+|+... +....+ ...
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333 344468999999999999731 111111 000
Q ss_pred ---------------------HHHHhcCC---------------------CCCCCcEEEEeeCCCCCCCCCHHHHHhHhC
Q 030008 110 ---------------------LHDLLNKP---------------------SLSGIPLLVLGNKIDKPGALSKQALTDEMG 147 (184)
Q Consensus 110 ---------------------~~~~~~~~---------------------~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~ 147 (184)
+..++... ....+|+|+|+||+|+... .+..+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~---~~~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA---ENNISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh---HHHHHHHH
Confidence 00000000 1234799999999997532 22222222
Q ss_pred cCcccCcceeEEEeeecCCCCHHHHHH-HHHHhhhc
Q 030008 148 LKSITDREVCCFMISCKNSTNIDSVID-WLVKHSKS 182 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~-~i~~~l~~ 182 (184)
. .....+++++||+.+.+++++.+ .+.+++++
T Consensus 238 ~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 238 L---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred h---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 1 12244699999999999999998 69998865
No 258
>PRK12739 elongation factor G; Reviewed
Probab=99.74 E-value=7.5e-17 Score=132.21 Aligned_cols=114 Identities=20% Similarity=0.196 Sum_probs=84.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC--C------C------------CCCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG--Y------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~--~------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
.+-.+|+++|++++|||||+++|+... . . .....|+......+..++.++.++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 345689999999999999999997421 0 0 1223344455566778889999999999998
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+...+...+..+|++++|+|+.++..... ...+.... ..++|+++++||+|+..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~----~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQAD----KYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHH----HcCCCEEEEEECCCCCC
Confidence 88888889999999999999987632221 22222222 24689999999999874
No 259
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.74 E-value=2.4e-17 Score=117.46 Aligned_cols=158 Identities=20% Similarity=0.288 Sum_probs=98.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC---CCCCccceeEEEEE-eCcEEEEEEecCCchhhHH-----hHHHHhccCCEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVT-KGNVTIKLWDLGGQPRFRS-----MWERYCRAVSAI 91 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~---~~~~t~~~~~~~~~-~~~~~~~~~D~~G~~~~~~-----~~~~~~~~~~~i 91 (184)
||+++|+.+|||||+.+.+..+..+. ...+|.......+. .+...+.+||.||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999988655432 23467777777775 5568999999999876644 356778999999
Q ss_pred EEEEeCCCcCcHHHH---HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc---cC---cceeEEEee
Q 030008 92 VYVVDAADPDNLSIS---RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI---TD---REVCCFMIS 162 (184)
Q Consensus 92 i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~S 162 (184)
|||+|+...+-...+ ...+..+... .+++.+.+.+.|+|+..+....+..+....... .. ....++.||
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999855433333 2333333222 257899999999999865444333222221111 11 137899999
Q ss_pred ecCCCCHHHHHHHHHHhhh
Q 030008 163 CKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~ 181 (184)
..+. .+-+.|..+++.|.
T Consensus 159 I~D~-Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 159 IWDE-SLYEAWSKIVQKLI 176 (232)
T ss_dssp TTST-HHHHHHHHHHHTTS
T ss_pred CcCc-HHHHHHHHHHHHHc
Confidence 9984 67777777777654
No 260
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=9.6e-17 Score=123.52 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=113.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC-----------------CCCCCCccceeEEEEEeCc---EEEEEEecCCchhh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY-----------------SEDMIPTVGFNMRKVTKGN---VTIKLWDLGGQPRF 77 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~-----------------~~~~~~t~~~~~~~~~~~~---~~~~~~D~~G~~~~ 77 (184)
+--++.|+.+..-|||||..+++..-. .+...-|+......+.+.+ +.+.++||||+-.|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 445889999999999999999883111 1122234443444454544 89999999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCccee
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVC 157 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
.....+.+.-|+++++|+|+..+---+.....+..+- .+..+|.|+||+|+... .++.+..+....+. ....+
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~a-dpe~V~~q~~~lF~-~~~~~ 211 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSA-DPERVENQLFELFD-IPPAE 211 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCC-CHHHHHHHHHHHhc-CCccc
Confidence 9999999999999999999998743344444444442 46899999999999755 33444443332222 22336
Q ss_pred EEEeeecCCCCHHHHHHHHHHhhh
Q 030008 158 CFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 158 ~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
++.+||++|.|+++++++|++.++
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhCC
Confidence 899999999999999999999875
No 261
>PRK00007 elongation factor G; Reviewed
Probab=99.73 E-value=1.4e-16 Score=130.53 Aligned_cols=114 Identities=19% Similarity=0.201 Sum_probs=82.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc--CCC------C------------CCCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT--GGY------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~--~~~------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
.+-.+|+++|++++|||||+++|+. +.. . .....|+......+...+..+.++||||+..
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 3456999999999999999999973 111 0 1122344444555677889999999999988
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+.......+..+|++++|+|+..+-.... ...+..... .++|.++++||+|+..
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 87778888899999999999987632222 222222222 3689999999999864
No 262
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.72 E-value=8.3e-17 Score=120.67 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=99.8
Q ss_pred CCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc----------CcHHHHHHHHHHHhcCCC
Q 030008 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP----------DNLSISRSELHDLLNKPS 118 (184)
Q Consensus 49 ~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 118 (184)
.+|.|.....+..++..+.+||++|+...+..|..++.+++++++|+|+++. ..+......+..++....
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 4566666677778889999999999999999999999999999999999874 345566677778887776
Q ss_pred CCCCcEEEEeeCCCCCCCC------------------CHHHHH----hHhCcCc-ccCcceeEEEeeecCCCCHHHHHHH
Q 030008 119 LSGIPLLVLGNKIDKPGAL------------------SKQALT----DEMGLKS-ITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 119 ~~~~~~iiv~nK~D~~~~~------------------~~~~~~----~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
..++|+++++||.|+..+. ..+... ..+.... .....+..+.++|.+-.+++.+|+.
T Consensus 226 ~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~ 305 (317)
T cd00066 226 FANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDA 305 (317)
T ss_pred ccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHH
Confidence 6789999999999964311 111111 1111111 1134566788999999999999999
Q ss_pred HHHhhhc
Q 030008 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~l~~ 182 (184)
+.+.+.+
T Consensus 306 v~~~i~~ 312 (317)
T cd00066 306 VKDIILQ 312 (317)
T ss_pred HHHHHHH
Confidence 8887754
No 263
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=7e-17 Score=115.16 Aligned_cols=164 Identities=18% Similarity=0.238 Sum_probs=107.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCC---CCCccceeEEEEEeCcEEEEEEecCCchh-------hHHhHHHHh
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPR-------FRSMWERYC 85 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~ 85 (184)
.++.++|+++|..|+||||+||+++++....- ...+.........++...+.+||+||.+. ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 45789999999999999999999996444221 11222222222334556799999999554 566677788
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC----------C--H-HHHHhHhCcCc-c
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL----------S--K-QALTDEMGLKS-I 151 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----------~--~-~~~~~~~~~~~-~ 151 (184)
...|.+++++++.++. +..-...+.++.... .+.++++++|.+|..... + . +.+..+..... .
T Consensus 116 ~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 222234444444332 348999999999985431 0 0 11111110000 0
Q ss_pred cCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 152 TDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
...=.|++..|...++|++.+...++..++.
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 1112368888899999999999999988753
No 264
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.72 E-value=1.6e-16 Score=119.99 Aligned_cols=134 Identities=18% Similarity=0.288 Sum_probs=100.1
Q ss_pred CCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc----------CcHHHHHHHHHHHhcCCC
Q 030008 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP----------DNLSISRSELHDLLNKPS 118 (184)
Q Consensus 49 ~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 118 (184)
.+|.|.....+..++..+.+||.+|+...+..|..++.+++++++|+|+++. ..+......+..++....
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 4566666677788889999999999999999999999999999999999963 346666677888888777
Q ss_pred CCCCcEEEEeeCCCCCCCC-----------------CHHH----HHhHhCcCcc--cCcceeEEEeeecCCCCHHHHHHH
Q 030008 119 LSGIPLLVLGNKIDKPGAL-----------------SKQA----LTDEMGLKSI--TDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 119 ~~~~~~iiv~nK~D~~~~~-----------------~~~~----~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
..++|+++++||.|+.... ..+. +...+..... ....+..+.+||.+-.++..+|+.
T Consensus 249 ~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~ 328 (342)
T smart00275 249 FANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDA 328 (342)
T ss_pred ccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHH
Confidence 7789999999999974311 1111 1111111111 224566788999999999999998
Q ss_pred HHHhhhc
Q 030008 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~l~~ 182 (184)
+.+.+.+
T Consensus 329 v~~~I~~ 335 (342)
T smart00275 329 VKDIILQ 335 (342)
T ss_pred HHHHHHH
Confidence 8877654
No 265
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.6e-16 Score=121.21 Aligned_cols=157 Identities=22% Similarity=0.327 Sum_probs=114.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCC----CCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDM----IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+...-|.++|+..-|||||+..|-+....... ..-++-..-.+. .+..++|.||||+..|..+..+-..-.|+++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 45577899999999999999999765543221 112222222233 4578999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc----cCcceeEEEeeecCCCC
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI----TDREVCCFMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~ 168 (184)
+|+.+.|+ ++....+.+.+....+.|+|+++||+|.... .++...+++..... ...+.+++++||++|+|
T Consensus 230 LVVAadDG-----VmpQT~EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 230 LVVAADDG-----VMPQTLEAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEEccCC-----ccHhHHHHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 99999987 2333333344555578999999999998744 44554444443222 23457899999999999
Q ss_pred HHHHHHHHHHhh
Q 030008 169 IDSVIDWLVKHS 180 (184)
Q Consensus 169 v~~l~~~i~~~l 180 (184)
++.|-+.+....
T Consensus 304 l~~L~eaill~A 315 (683)
T KOG1145|consen 304 LDLLEEAILLLA 315 (683)
T ss_pred hHHHHHHHHHHH
Confidence 999999887654
No 266
>PRK09866 hypothetical protein; Provisional
Probab=99.72 E-value=4.6e-16 Score=122.99 Aligned_cols=112 Identities=19% Similarity=0.150 Sum_probs=72.9
Q ss_pred EEEEEEecCCchhh-----HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 64 VTIKLWDLGGQPRF-----RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 64 ~~~~~~D~~G~~~~-----~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
..+.++||||.... .......+..+|++++|+|+....+... ..+...+.... +..|+++|+||+|..+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 56899999996432 3344557899999999999987533322 22333333221 2359999999999864322
Q ss_pred --HHHHHhHhCcC--cccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 139 --KQALTDEMGLK--SITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 139 --~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
.+.+....... ........++++||++|.|++++++.|..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 33333332211 11122346999999999999999999876
No 267
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.71 E-value=1.1e-15 Score=117.44 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEE------------------------eCcEEEEEEecCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVT------------------------KGNVTIKLWDLGG 73 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~------------------------~~~~~~~~~D~~G 73 (184)
++|+++|.||+|||||+|++++..... .+++|+........ .....++++|+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999776542 34555554443321 1236689999999
Q ss_pred ch----h---hHHhHHHHhccCCEEEEEEeCC
Q 030008 74 QP----R---FRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 74 ~~----~---~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
.. . ........++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 2 2334445589999999999997
No 268
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.70 E-value=6.2e-17 Score=123.45 Aligned_cols=176 Identities=19% Similarity=0.160 Sum_probs=123.4
Q ss_pred hHHHHHHHHHhhc--ccceeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCcEEEEEEecCCchh--
Q 030008 3 LWEAFLNWLRSLF--FKQEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-- 76 (184)
Q Consensus 3 ~~~~~~~~~~~~~--~~~~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~-- 76 (184)
++++..+++.++. -.+.-+++++|-||+|||||+|.+..... .+..++|.....+++.+.-..+++.||||.-.
T Consensus 150 yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~p 229 (620)
T KOG1490|consen 150 YLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRP 229 (620)
T ss_pred HHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcc
Confidence 6788888988887 35678999999999999999999887654 45677888888889988888999999999321
Q ss_pred --hHHh-----HHHHhccCCEEEEEEeCCCcC--cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC
Q 030008 77 --FRSM-----WERYCRAVSAIVYVVDAADPD--NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG 147 (184)
Q Consensus 77 --~~~~-----~~~~~~~~~~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~ 147 (184)
-++. +....+--.+++|+.|++..+ |...-...+.++ .....++|.|+|+||+|........+-.+.+.
T Consensus 230 lEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsI--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll 307 (620)
T KOG1490|consen 230 EEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSI--KPLFANKVTILVLNKIDAMRPEDLDQKNQELL 307 (620)
T ss_pred hhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHh--HHHhcCCceEEEeecccccCccccCHHHHHHH
Confidence 1111 112223346789999998765 444444444444 23345799999999999976544332222222
Q ss_pred cCcccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 148 LKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
.........+++.+|+.+.+||-++....++.+
T Consensus 308 ~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 308 QTIIDDGNVKVVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred HHHHhccCceEEEecccchhceeeHHHHHHHHH
Confidence 222223346799999999999988776666554
No 269
>PRK12740 elongation factor G; Reviewed
Probab=99.67 E-value=2.5e-15 Score=123.22 Aligned_cols=106 Identities=23% Similarity=0.249 Sum_probs=77.8
Q ss_pred EcCCCCChHHHHHHHHcCCCC--------------------CCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHH
Q 030008 25 IGLQNAGKTSLVNVVATGGYS--------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERY 84 (184)
Q Consensus 25 ~G~~~sGKStli~~l~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 84 (184)
+|++++|||||+++|...... .....|++.....+..++..+.++||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999632110 012234445556677888999999999999888888888
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+..+|++++|+|+......... ..+..... .++|+++|+||+|...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEEEECCCCCC
Confidence 9999999999999886544332 22222222 3689999999999864
No 270
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.66 E-value=1e-15 Score=114.47 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=69.5
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 141 (184)
.+.++.++||+|....... ....+|.++++.+...++....... ..+. ...++|+||+|+........
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E------~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME------LADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh------hhheEEeehhcccchhHHHH
Confidence 4578999999996643322 3556999999987555543333221 1211 23489999999976543333
Q ss_pred H----HhHhCcCccc--CcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 142 L----TDEMGLKSIT--DREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 142 ~----~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
. ...+...... ....|++.+||+++.|++++++.|.+.+.
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3 2233221111 12247999999999999999999998754
No 271
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.65 E-value=2.1e-18 Score=115.54 Aligned_cols=162 Identities=23% Similarity=0.273 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EEe---CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTK---GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~~---~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+++.|+|..|+|||+++.+..++.++.-+..|++..... ++. .-+...+||..||+++..+..-+++.+.+.++|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 689999999999999999999988887777888844322 222 235688999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcC---CCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNK---PSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
||+++.-+|+....|..++... ......|+++..||+|....... +....+......+.-..++++|++...++++
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~-~~~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN-EATRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhh-hhHHHHHHHHhccCccceeeeccccccChhH
Confidence 9999999999999888887554 33345789999999998643221 1111221111222233589999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
..+.++..+..
T Consensus 185 a~r~lVe~~lv 195 (229)
T KOG4423|consen 185 AQRELVEKILV 195 (229)
T ss_pred HHHHHHHHHHh
Confidence 99998877543
No 272
>PRK13768 GTPase; Provisional
Probab=99.64 E-value=5.8e-16 Score=112.72 Aligned_cols=117 Identities=18% Similarity=0.053 Sum_probs=74.3
Q ss_pred EEEEEEecCCchhhH---HhH---HHHhcc--CCEEEEEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 64 VTIKLWDLGGQPRFR---SMW---ERYCRA--VSAIVYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~---~~~---~~~~~~--~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
.++.++|+||+.+.. ... ...+.. ++++++++|+.......... .++....... ..++|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhc
Confidence 379999999976542 222 222333 79999999997654443332 2222111111 1469999999999998
Q ss_pred CCCCHHHHHhHhCc-------------------------CcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 135 GALSKQALTDEMGL-------------------------KSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 135 ~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
+..+.++....+.. ........+++++|++++.|++++++.|.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 76554444333321 000122246899999999999999999988764
No 273
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.64 E-value=5.2e-16 Score=110.56 Aligned_cols=117 Identities=18% Similarity=0.160 Sum_probs=77.6
Q ss_pred cEEEEEEecCCchhh------HHhHHHHhc--cCCEEEEEEeCCC---cCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 030008 63 NVTIKLWDLGGQPRF------RSMWERYCR--AVSAIVYVVDAAD---PDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~------~~~~~~~~~--~~~~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 131 (184)
..++.++|||||-+. +..+...+. ..-+++|++|... +.+|-...-+.-+++.. .+.|+|+|.||+
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~ 191 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKT 191 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecc
Confidence 356899999997543 222222222 2467899999864 44554445555556554 569999999999
Q ss_pred CCCCCCCHHHHHhHhCcCc-----------------------ccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 132 DKPGALSKQALTDEMGLKS-----------------------ITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 132 D~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
|+.++....++...+.... .....+..+-+||.+|.|.+++|..+...+.+
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 9987655444333322100 11234678999999999999999999887764
No 274
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.2e-15 Score=110.95 Aligned_cols=162 Identities=18% Similarity=0.196 Sum_probs=109.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC-------------------------CCCCCccceeEE-EEE------eCcE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS-------------------------EDMIPTVGFNMR-KVT------KGNV 64 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~-------------------------~~~~~t~~~~~~-~~~------~~~~ 64 (184)
..+++|.++|+..-|||||..++.+-... ..+.+ ..+... ... .--.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~-~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRP-ECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCC-cccccCCCCCCCCCCccEEE
Confidence 57899999999999999999999831110 00000 000000 000 1125
Q ss_pred EEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHh
Q 030008 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTD 144 (184)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~ 144 (184)
.+.|+|.||++......-+-..-.|++++|++++.++......+.+..+--. .-+.+|+|-||+|+.+.+...+-.+
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHH
Confidence 6899999999988777666666679999999999887666666555443211 2478999999999986544333222
Q ss_pred HhCc--CcccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 145 EMGL--KSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 145 ~~~~--~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+++. ......+.|++++||..+.|++.++++|...++.
T Consensus 164 qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 164 QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 2221 1122345689999999999999999999998763
No 275
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.64 E-value=3.3e-15 Score=111.25 Aligned_cols=135 Identities=17% Similarity=0.286 Sum_probs=102.9
Q ss_pred CCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC----------cHHHHHHHHHHHhcCC
Q 030008 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD----------NLSISRSELHDLLNKP 117 (184)
Q Consensus 48 ~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~----------~~~~~~~~~~~~~~~~ 117 (184)
..+|.|.....+..++..+.++|.+||...+.-|.+++.+++++++|+++++.+ .+......+..+++..
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 467888888889999999999999999999999999999999999999998642 3344456778888888
Q ss_pred CCCCCcEEEEeeCCCCCCCCC-----------------HHHH----HhHhCc-CcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 118 SLSGIPLLVLGNKIDKPGALS-----------------KQAL----TDEMGL-KSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 118 ~~~~~~~iiv~nK~D~~~~~~-----------------~~~~----~~~~~~-~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
...+.++|+.+||.|+..+.- .++. ...+.. .......+.++.++|++-.+|+.+|+.
T Consensus 259 ~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~a 338 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDA 338 (354)
T ss_pred ccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHH
Confidence 888899999999999854211 1111 111111 111224566788999999999999999
Q ss_pred HHHhhhc
Q 030008 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~l~~ 182 (184)
..+.+.+
T Consensus 339 v~d~Ii~ 345 (354)
T KOG0082|consen 339 VTDTIIQ 345 (354)
T ss_pred HHHHHHH
Confidence 8887754
No 276
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.64 E-value=2.7e-15 Score=94.55 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=92.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCC----chhhHHhHHHHhccCCEEEEEEe
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG----QPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G----~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
|++++|..|+|||||.+++-+...- +-.|-. +.+.+ --.+|||| +..+.+.+......+|++++|-.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-----ve~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-----VEFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccce-----eeccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 6899999999999999999744332 111111 11111 12579999 33344444555688999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
++++++.-. ..+. ....+|+|-|+||+|+.+..+.+...+.+.+... -++|.+|+.+..|++++++.|
T Consensus 74 and~~s~f~--p~f~------~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa----~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 74 ANDPESRFP--PGFL------DIGVKKVIGVVTKADLAEDADISLVKRWLREAGA----EPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred ccCccccCC--cccc------cccccceEEEEecccccchHhHHHHHHHHHHcCC----cceEEEeccCcccHHHHHHHH
Confidence 999863211 1111 1234679999999999875555544444443332 269999999999999999998
Q ss_pred HHh
Q 030008 177 VKH 179 (184)
Q Consensus 177 ~~~ 179 (184)
...
T Consensus 142 ~~~ 144 (148)
T COG4917 142 ASL 144 (148)
T ss_pred Hhh
Confidence 764
No 277
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.63 E-value=9.4e-15 Score=107.57 Aligned_cols=112 Identities=13% Similarity=0.217 Sum_probs=69.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCC----------CCCccceeEE--EEEeCc--EEEEEEecCCchhhH---H--
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSED----------MIPTVGFNMR--KVTKGN--VTIKLWDLGGQPRFR---S-- 79 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~----------~~~t~~~~~~--~~~~~~--~~~~~~D~~G~~~~~---~-- 79 (184)
.++|+++|++|+|||||+|++++...... ..+|...... .+..++ ..+.+|||||..... .
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999999999998776432 2334433322 233333 679999999932210 0
Q ss_pred ---------hHH------------HHhc--cCCEEEEEEeCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 80 ---------MWE------------RYCR--AVSAIVYVVDAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 80 ---------~~~------------~~~~--~~~~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
... ..+. .+|+++|+++..... +... ...+..+ . ..+|+++|+||+|+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l-~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRL-S----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHH-h----ccCCEEEEEECCCcCC
Confidence 000 1111 357888988887522 2222 2222333 2 1589999999999975
Q ss_pred C
Q 030008 136 A 136 (184)
Q Consensus 136 ~ 136 (184)
.
T Consensus 158 ~ 158 (276)
T cd01850 158 P 158 (276)
T ss_pred H
Confidence 3
No 278
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=9.9e-15 Score=111.06 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC-----------------CCCCCCCccceeEEEEE-----eCcEEEEEEecCCchhh
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG-----------------YSEDMIPTVGFNMRKVT-----KGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~-----------------~~~~~~~t~~~~~~~~~-----~~~~~~~~~D~~G~~~~ 77 (184)
-+..++.+-.-|||||..++...- ..+...-|+....-.+. .+.+.+.++||||+-.|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 456889999999999999988311 11222223332222222 24588999999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCcccCc
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---QALTDEMGLKSITDR 154 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~ 154 (184)
.-...+.+..|.++++|+|++.+-.-+.+...+..+- .+.-+|.|+||+|+...... +++...++....
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~--- 161 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS--- 161 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc---
Confidence 8888888889999999999998743344444444442 36889999999999765332 333344433322
Q ss_pred ceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 155 EVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
..+.+||++|.||+++++.|++.++.
T Consensus 162 --dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 162 --DAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred --hheeEecccCCCHHHHHHHHHhhCCC
Confidence 37899999999999999999998763
No 279
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.60 E-value=5.3e-15 Score=108.78 Aligned_cols=148 Identities=17% Similarity=0.139 Sum_probs=104.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC-----------------------------------CCCCCCCccceeEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG-----------------------------------YSEDMIPTVGFNMRKVTK 61 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~-----------------------------------~~~~~~~t~~~~~~~~~~ 61 (184)
+..++.+-+|+..=||||||.+|+... ..+...-|+...++.+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 356899999999999999999998211 012233466677777888
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHH--HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSIS--RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~ 139 (184)
...+|.+.||||+++|......-...||++|+++|+..+- ++.. ...+..++. -..+++.+||+|+.+..+.
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLG-----IrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLG-----IRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhC-----CcEEEEEEeeecccccCHH
Confidence 8899999999999999888888888899999999997652 1112 123344443 3688999999999876442
Q ss_pred --HHHHhHhCcCcc--cCcceeEEEeeecCCCCHH
Q 030008 140 --QALTDEMGLKSI--TDREVCCFMISCKNSTNID 170 (184)
Q Consensus 140 --~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~ 170 (184)
+++...+..... ......++|+||+.|+||-
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 333333322111 1223479999999999874
No 280
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.60 E-value=1.2e-14 Score=104.10 Aligned_cols=142 Identities=12% Similarity=0.127 Sum_probs=85.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
.+...|+++|.+|+|||||++.+.............+.. ......+..+.++|+||.. ......++.+|++++++|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviD 112 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TVVTGKKRRLTFIECPNDI---NAMIDIAKVADLVLLLID 112 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EEEecCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEe
Confidence 455789999999999999999998542221111122211 1123356789999999854 233345688999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCCCCCCC-HHHHHhHhCcCcc--cCcceeEEEeeecCCC
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPL-LVLGNKIDKPGALS-KQALTDEMGLKSI--TDREVCCFMISCKNST 167 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~ 167 (184)
+..+..... ..+...+.. .+.|. ++|+||+|+.+... .++..+.+..... ...+.+++++||+++-
T Consensus 113 a~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 113 ASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred cCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 986543222 122222222 34674 55999999974322 2222322222111 2234689999999873
No 281
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=6.6e-15 Score=114.25 Aligned_cols=151 Identities=19% Similarity=0.191 Sum_probs=102.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc--------------------CC-------------CCCCCCCccceeEEEEEeCcE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT--------------------GG-------------YSEDMIPTVGFNMRKVTKGNV 64 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~--------------------~~-------------~~~~~~~t~~~~~~~~~~~~~ 64 (184)
.+++++++|+..+|||||+.+++. ++ ..+...-|.......++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 568999999999999999999881 11 111222233344444666678
Q ss_pred EEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC---cHH---HHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD---NLS---ISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
.+++.|+||+..|......-..++|+.++|+|++..+ .|. ..++ ...++... ....+||++||+|++++.+
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~L--gi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSL--GISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHc--CcceEEEEeecccccCccH
Confidence 8999999999888877777778899999999998653 121 1111 11222221 1467899999999998754
Q ss_pred H--HHHHhHh-----CcCcccCcceeEEEeeecCCCCHHH
Q 030008 139 K--QALTDEM-----GLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 139 ~--~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
. +++...+ ....+......|++||+.+|+|+-.
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 2 3333332 2344556667899999999998654
No 282
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.57 E-value=1.1e-14 Score=119.89 Aligned_cols=113 Identities=21% Similarity=0.222 Sum_probs=78.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC---------------CCCCC---CCCccceeEE----EEEeCcEEEEEEecCCch
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG---------------GYSED---MIPTVGFNMR----KVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~---------------~~~~~---~~~t~~~~~~----~~~~~~~~~~~~D~~G~~ 75 (184)
+..+|+++|+.++|||||+++|+.. .+... ...|+..... .+...++++.++||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4579999999999999999999742 11110 1223332221 244567899999999999
Q ss_pred hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
.+.......+..+|++++|+|+..+-.... ...+..... .+.|.++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEEEEEEChhccc
Confidence 998888889999999999999987532211 122222222 3578899999999853
No 283
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.56 E-value=3.3e-14 Score=101.09 Aligned_cols=161 Identities=11% Similarity=0.049 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCC----CCCccceeEEEEEeCcEEEEEEecCCchh-------hHHhHHH----H
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSED----MIPTVGFNMRKVTKGNVTIKLWDLGGQPR-------FRSMWER----Y 84 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~----~ 84 (184)
++|+++|..||||||++|.+++...... ...|...........+..+.++||||-.. ....+.. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 5899999999999999999997665322 23355566666678889999999999321 1111222 2
Q ss_pred hccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhH-----hCcCcccCcceeE
Q 030008 85 CRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDE-----MGLKSITDREVCC 158 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 158 (184)
..+.+++++|++..... ........+..++... .-..++||.|..|.......+++.+. +.....+. +-.+
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c-~~R~ 157 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKC-GGRY 157 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHT-TTCE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhc-CCEE
Confidence 35679999999998321 1222334455555432 22578999999998766554333331 11111111 1246
Q ss_pred EEeeec------CCCCHHHHHHHHHHhhhcC
Q 030008 159 FMISCK------NSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 159 ~~~Sa~------~~~~v~~l~~~i~~~l~~~ 183 (184)
+..+.. ....+.+|++.|...+.++
T Consensus 158 ~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 158 HVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 666554 3356888888888877654
No 284
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.56 E-value=3.9e-14 Score=116.96 Aligned_cols=125 Identities=23% Similarity=0.249 Sum_probs=81.4
Q ss_pred HHHHHHHHhhcc--cceeEEEEEcCCCCChHHHHHHHHcCCC--CCC----------------CCCccceeEEEEE----
Q 030008 5 EAFLNWLRSLFF--KQEMELSLIGLQNAGKTSLVNVVATGGY--SED----------------MIPTVGFNMRKVT---- 60 (184)
Q Consensus 5 ~~~~~~~~~~~~--~~~~~v~i~G~~~sGKStli~~l~~~~~--~~~----------------~~~t~~~~~~~~~---- 60 (184)
++..+.+.+.+. ++--+|+++|+.++|||||+.+++.... ... ..-|+......+.
T Consensus 4 ~~~~~~~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~ 83 (731)
T PRK07560 4 KKMVEKILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYE 83 (731)
T ss_pred hHHHHHHHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEec
Confidence 344445544443 2345899999999999999999984221 000 0012222212222
Q ss_pred eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
.++..+.++||||+..+.......+..+|++++|+|+..+-... ....+..... .+.|.|+++||+|..
T Consensus 84 ~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 84 GKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred CCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhh
Confidence 24678999999999999888889999999999999998763222 2223332222 246789999999975
No 285
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.55 E-value=9.5e-15 Score=105.18 Aligned_cols=115 Identities=18% Similarity=0.096 Sum_probs=60.1
Q ss_pred EEEEEecCCchhhHHhHHHH------h--ccCCEEEEEEeCCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 65 TIKLWDLGGQPRFRSMWERY------C--RAVSAIVYVVDAADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~------~--~~~~~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
++.++|||||.++-..+... + ...-++++++|+....+...... .+...... .....|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence 79999999998875443332 2 23457899999976554333322 12211110 013699999999999986
Q ss_pred CCC--------------------HHHHHhHhCcCcccCcce-eEEEeeecCCCCHHHHHHHHHHhh
Q 030008 136 ALS--------------------KQALTDEMGLKSITDREV-CCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 136 ~~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
... ...+...+.......... .++++|+.+++|+++++..|.+++
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 210 011111221112222223 799999999999999999987765
No 286
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.55 E-value=9.9e-14 Score=105.46 Aligned_cols=159 Identities=23% Similarity=0.338 Sum_probs=111.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCC--C------------CCCCcccee----EEEEEeCcEEEEEEecCCchhhHHh
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYS--E------------DMIPTVGFN----MRKVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~--~------------~~~~t~~~~----~~~~~~~~~~~~~~D~~G~~~~~~~ 80 (184)
--+|+++.+..-|||||+.+++.+... . ......++. -..+.++++.+.++||||+-.|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 347999999999999999999965431 0 111112211 1226678899999999999999999
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc---Cc--ccCcc
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL---KS--ITDRE 155 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---~~--~~~~~ 155 (184)
.++.+.-.|++++++|+.++. .......+...+.. +.+-|+|+||+|....-..+-+.+.+.+ .. ....+
T Consensus 85 VERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 999999999999999998763 22333334444443 5666888999998764333322222222 11 12356
Q ss_pred eeEEEeeecCCC----------CHHHHHHHHHHhhhc
Q 030008 156 VCCFMISCKNST----------NIDSVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~~~~----------~v~~l~~~i~~~l~~ 182 (184)
+|++..|+..|. +++.||+.|.+.++.
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 789999999874 689999999988764
No 287
>PTZ00258 GTP-binding protein; Provisional
Probab=99.54 E-value=3.7e-13 Score=102.66 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=62.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeC-----------------cEEEEEEecCCch--
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQP-- 75 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~-----------------~~~~~~~D~~G~~-- 75 (184)
...++|+++|.||+|||||+|++++.... ..+++|+......+... +.++.++|+||..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 46789999999999999999999876543 34667777776665433 3358999999932
Q ss_pred -----hhHHhHHHHhccCCEEEEEEeCC
Q 030008 76 -----RFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 76 -----~~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
.........++++|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23334555678899999999984
No 288
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.53 E-value=4.9e-13 Score=96.89 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=75.8
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCccceeEEEEEeCcEEEEEEecCCchhhH----------HhHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR----------SMWE 82 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~ 82 (184)
....++|+++|.+|+|||||+|++++..... ....|..........++..+.++||||..... ....
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 3577999999999999999999999765421 22344444444455667889999999954331 1122
Q ss_pred HHhc--cCCEEEEEEeCCCc-CcHH--HHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 83 RYCR--AVSAIVYVVDAADP-DNLS--ISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 83 ~~~~--~~~~ii~v~d~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
.++. ..+++++|..+... .... .+.+.+.+.+... .-.++++|.||+|...+
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCC
Confidence 3333 46888888766532 1222 2334444443321 12579999999998643
No 289
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.5e-13 Score=99.98 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=99.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---------CCCCCCccceeEEEE---------EeCcEEEEEEecCCchhhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---------SEDMIPTVGFNMRKV---------TKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---------~~~~~~t~~~~~~~~---------~~~~~~~~~~D~~G~~~~~ 78 (184)
+-.+++.++|+..||||||.+++..-.- +....-|.+..+..+ +.+...+.++|.||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 3458999999999999999999983221 111122222211111 1234678999999988877
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH----HHHhHhCc--Cc-
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ----ALTDEMGL--KS- 150 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~----~~~~~~~~--~~- 150 (184)
..+....+-.|.+++|+|+..+..-+... -.+-++ .-...++|+||.|...+..+. +....... ..
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 77766667789999999998653111111 111112 125568889999987664432 22222211 11
Q ss_pred ccCcceeEEEeeecCC----CCHHHHHHHHHHhhh
Q 030008 151 ITDREVCCFMISCKNS----TNIDSVIDWLVKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~----~~v~~l~~~i~~~l~ 181 (184)
-.....|++++||..| +++.++.+.|.+.+.
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 1123468999999999 788888888877653
No 290
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.53 E-value=1.8e-12 Score=95.67 Aligned_cols=117 Identities=17% Similarity=0.150 Sum_probs=72.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhhHH---h----HHHHh-
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS---M----WERYC- 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~----~~~~~- 85 (184)
...++|+++|.+|+||||++|++++.... .....+..........++..+.++||||...... . ...++
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~ 115 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLL 115 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999976542 1112222222333345778999999999654321 1 12222
Q ss_pred -ccCCEEEEEEeCCC--cCcH-HHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 86 -RAVSAIVYVVDAAD--PDNL-SISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 86 -~~~~~ii~v~d~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
...|++++|.++.. .... ..+...+...+... .-.+.|+|+|++|..+
T Consensus 116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP 167 (313)
T ss_pred cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence 25799999965542 2211 22334444444321 2257899999999763
No 291
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.52 E-value=2.2e-13 Score=102.87 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=80.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCC-------CCccceeEEEEEeCc-EEEEEEecCCchhhHHhHHHH----
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDM-------IPTVGFNMRKVTKGN-VTIKLWDLGGQPRFRSMWERY---- 84 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~-------~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~~~~~~~~---- 84 (184)
+..++|+|+|.+|+|||||||+|.+-+..+.. .+|..... +.... .++++||.||..........|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~--Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTP--YPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EE--EE-SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCee--CCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 56799999999999999999999752222111 12222222 22222 359999999965554444444
Q ss_pred -hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC-CC--------CCCHHHHHhHhCcC-----
Q 030008 85 -CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK-PG--------ALSKQALTDEMGLK----- 149 (184)
Q Consensus 85 -~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~-~~--------~~~~~~~~~~~~~~----- 149 (184)
+...|.++++.+-.-.++.-.+. ..+.. .++|+++|-||+|. .. .-..+++.+.+...
T Consensus 111 ~~~~yD~fiii~s~rf~~ndv~La---~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 111 KFYRYDFFIIISSERFTENDVQLA---KEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp TGGG-SEEEEEESSS--HHHHHHH---HHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred cccccCEEEEEeCCCCchhhHHHH---HHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 45668888877655443222222 22222 37899999999996 11 11122222222111
Q ss_pred -cccCcceeEEEeeecCCC--CHHHHHHHHHHhhhcC
Q 030008 150 -SITDREVCCFMISCKNST--NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 150 -~~~~~~~~~~~~Sa~~~~--~v~~l~~~i~~~l~~~ 183 (184)
...-...++|.+|+.+-. ++..|.+.|.+.|+..
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 111233478899988754 5888888888777653
No 292
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.52 E-value=2.2e-13 Score=114.40 Aligned_cols=145 Identities=18% Similarity=0.165 Sum_probs=89.2
Q ss_pred CChHHHHHHHHcCCCCCCCCC--ccceeEEEEEeC------------------cEEEEEEecCCchhhHHhHHHHhccCC
Q 030008 30 AGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTKG------------------NVTIKLWDLGGQPRFRSMWERYCRAVS 89 (184)
Q Consensus 30 sGKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~------------------~~~~~~~D~~G~~~~~~~~~~~~~~~~ 89 (184)
++||||+.++.+........- |-.+....+... ...+.+|||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 459999999986655432211 111111111111 123899999999999888888888899
Q ss_pred EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--------------HHHHHhHh---------
Q 030008 90 AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--------------KQALTDEM--------- 146 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--------------~~~~~~~~--------- 146 (184)
++++|+|++++-.... ...+. .+.. .++|+++|+||+|+..... .+....++
T Consensus 552 ivlLVVDa~~Gi~~qT-~e~I~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~ 626 (1049)
T PRK14845 552 LAVLVVDINEGFKPQT-IEAIN-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIG 626 (1049)
T ss_pred EEEEEEECcccCCHhH-HHHHH-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 9999999987421111 11112 2222 3589999999999863211 01111110
Q ss_pred --CcCc----------ccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 147 --GLKS----------ITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 147 --~~~~----------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
.... ......+++++||++|+|+++|.+.|...
T Consensus 627 ~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 627 KLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 1110 01235689999999999999999887644
No 293
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.51 E-value=1e-13 Score=115.82 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=78.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--C----------------CCCCccceeEEEEEe----------------C
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--E----------------DMIPTVGFNMRKVTK----------------G 62 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--~----------------~~~~t~~~~~~~~~~----------------~ 62 (184)
.+-.+|+++|+.++|||||+.+|+..... . ....|+......+.+ .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 34569999999999999999999843210 0 001111211111222 2
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
+..+.++||||+..+.......++.+|++++|+|+.++-.... ...+..... .++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 5778999999999998888998999999999999987632221 223333332 468999999999986
No 294
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.5e-13 Score=103.93 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=113.5
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC-----CCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSE-----DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
-|+..|+-.-|||||+.++.+..... ....|+...+.....++..+.|+|.||++++-......+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 47889999999999999998654432 3445666667777777789999999999999888888888899999999
Q ss_pred eCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+.++-..... .-.+.+++ .....++|+||+|..++...++..+....... ....+++.+|+.+|+||++|.+
T Consensus 82 ~~deGl~~qtgEhL~iLdll-----gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 82 AADEGLMAQTGEHLLILDLL-----GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred eCccCcchhhHHHHHHHHhc-----CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHH
Confidence 99765211111 11122222 23567999999999876555544444443333 4556789999999999999999
Q ss_pred HHHHhh
Q 030008 175 WLVKHS 180 (184)
Q Consensus 175 ~i~~~l 180 (184)
.|.+.+
T Consensus 156 ~l~~L~ 161 (447)
T COG3276 156 ELIDLL 161 (447)
T ss_pred HHHHhh
Confidence 999887
No 295
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.50 E-value=7.7e-13 Score=93.53 Aligned_cols=152 Identities=20% Similarity=0.257 Sum_probs=107.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC--CCCCCCCCccceeEEEEEeCcEEEEEEecCCchhh-------HHhHHHHhccCC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG--GYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVS 89 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~~ 89 (184)
.-+|+++|.|.+|||||+..++.. ......++|.......+.+++..+++.|.||.-.- ..+.....+.+|
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaD 141 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTAD 141 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeeccc
Confidence 479999999999999999999843 33456788888899999999999999999994332 233445668899
Q ss_pred EEEEEEeCCCcCcHHHH-HHH-----------------------------------------------------------
Q 030008 90 AIVYVVDAADPDNLSIS-RSE----------------------------------------------------------- 109 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~-~~~----------------------------------------------------------- 109 (184)
.++.|.|++..+....+ ...
T Consensus 142 lilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~Re 221 (364)
T KOG1486|consen 142 LILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFRE 221 (364)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEec
Confidence 99999999876533321 111
Q ss_pred ------HHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 110 ------LHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 110 ------~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
+.+++...+ .=++++.|.||+|..+- +++.+--... .-+.+|+....|++.+++.|++.+.
T Consensus 222 D~t~DdfIDvi~gnr-~Y~~ClYvYnKID~vs~---eevdrlAr~P-------nsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 222 DCTVDDFIDVIEGNR-VYIKCLYVYNKIDQVSI---EEVDRLARQP-------NSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred CCChHHHHHHHhccc-eEEEEEEEeeccceecH---HHHHHHhcCC-------CcEEEEeccccCHHHHHHHHHHHhc
Confidence 222222111 12578888899987743 3333222221 2577899999999999999999864
No 296
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.50 E-value=6.7e-13 Score=100.19 Aligned_cols=79 Identities=28% Similarity=0.392 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCc-----------------EEEEEEecCCchh----
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQPR---- 76 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~---- 76 (184)
++|+++|.||+|||||+|++++... ...+++|+......+...+ ..+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999997664 3346777776665544332 3589999999322
Q ss_pred ---hHHhHHHHhccCCEEEEEEeCC
Q 030008 77 ---FRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 77 ---~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
........++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 2334555678999999999995
No 297
>PTZ00416 elongation factor 2; Provisional
Probab=99.49 E-value=1.6e-13 Score=114.59 Aligned_cols=113 Identities=21% Similarity=0.209 Sum_probs=77.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC--CC-C---------------CCCccceeEEEEEeC----------cEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY--SE-D---------------MIPTVGFNMRKVTKG----------NVTIKL 68 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~--~~-~---------------~~~t~~~~~~~~~~~----------~~~~~~ 68 (184)
++..+|+++|+.++|||||+++|+.... .. . ...|+......+.+. +..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4456999999999999999999985221 00 0 001111111122222 567999
Q ss_pred EecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
+||||+..+.......++.+|++++|+|+.++-... ....+..+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 999999999888888899999999999998763222 2233333332 358999999999986
No 298
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.49 E-value=1.1e-12 Score=92.20 Aligned_cols=104 Identities=17% Similarity=0.187 Sum_probs=64.9
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHH
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQ 140 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~ 140 (184)
..+..++++.|..-..... ..+ ++.++.|+|+.+.+.... ....- ....-++++||+|+.+. ...+
T Consensus 91 ~~D~iiIEt~G~~l~~~~~-~~l--~~~~i~vvD~~~~~~~~~---~~~~q------i~~ad~~~~~k~d~~~~~~~~~~ 158 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFS-PEL--ADLTIFVIDVAAGDKIPR---KGGPG------ITRSDLLVINKIDLAPMVGADLG 158 (199)
T ss_pred CCCEEEEECCCCCcccccc-hhh--hCcEEEEEEcchhhhhhh---hhHhH------hhhccEEEEEhhhccccccccHH
Confidence 3567788888832211111 111 577999999987654221 10010 12334899999999753 2333
Q ss_pred HHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 141 ALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.+.+..... +...+++++||++|+|+++++++|.+++.
T Consensus 159 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 159 VMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 333333222 34568999999999999999999988764
No 299
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=5.7e-13 Score=100.67 Aligned_cols=115 Identities=26% Similarity=0.348 Sum_probs=84.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc-CC-C----------C------------CCCCCccceeEEEEEeCcEEEEEEecC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT-GG-Y----------S------------EDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~-~~-~----------~------------~~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.++-+-+|+-+|.+|||||-.+++- ++ + . ....-++.....++.+.+..+++.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 3455778999999999999998771 00 0 0 001112224556678899999999999
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
|++.+..-+-+.+.-+|.++.|+|+..+ +......++.-++..++|++=.+||.|-...
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG-----iE~qT~KLfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG-----IEPQTLKLFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC-----ccHHHHHHHHHHhhcCCceEEEeeccccccC
Confidence 9999999888888889999999999876 2233333444455578999999999997654
No 300
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.47 E-value=2.7e-12 Score=95.89 Aligned_cols=107 Identities=15% Similarity=0.057 Sum_probs=65.6
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 141 (184)
.++++.++||+|..... ...+..+|.++++.+....+ .+......+ ..+|.++|+||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~---el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGD---DLQGIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccH---HHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 35789999999954222 23456678888886544332 232222223 2477899999999975433221
Q ss_pred HHhHh----CcCccc--CcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 142 LTDEM----GLKSIT--DREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 142 ~~~~~----~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
....+ ...... ....+++++||+++.|++++++.|.+.+
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 11111 111111 1223689999999999999999998764
No 301
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.46 E-value=2.9e-14 Score=101.69 Aligned_cols=152 Identities=16% Similarity=0.224 Sum_probs=89.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc----CCCC-----CCCC-------------------CccceeEEEE---------
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT----GGYS-----EDMI-------------------PTVGFNMRKV--------- 59 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~----~~~~-----~~~~-------------------~t~~~~~~~~--------- 59 (184)
.+.+.|.+.|+||+|||||+.+|.. .+.. .+++ ...+...+.+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 3678999999999999999998871 1100 0000 0111122222
Q ss_pred -----------EeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEe
Q 030008 60 -----------TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLG 128 (184)
Q Consensus 60 -----------~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~ 128 (184)
..-++++.+++|.|.-+..-.. ..-+|.+++|.-+.-++..+.+...+.++ +-++|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I---~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDI---ADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHH---HTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHH---HHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEE
Confidence 1245789999999854443322 34589999999998777655554444443 348999
Q ss_pred eCCCCCCCC-CHHHHHhHhCcCc--ccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 129 NKIDKPGAL-SKQALTDEMGLKS--ITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 129 nK~D~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
||+|..... ...++...+.... ...+..|++.+||.++.|++++++.|.+.-
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 999964221 1233333333222 233446899999999999999999998753
No 302
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.44 E-value=1.5e-13 Score=106.09 Aligned_cols=131 Identities=21% Similarity=0.312 Sum_probs=92.7
Q ss_pred CccceeEEEEEe-CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc----------CcHHHHHHHHHHHhcCCC
Q 030008 50 PTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP----------DNLSISRSELHDLLNKPS 118 (184)
Q Consensus 50 ~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 118 (184)
+|.|+....+.. ++..+.++|++|+...+..|..++.++++++||+++++- ..+......+..+.....
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~ 300 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW 300 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc
Confidence 455556666777 889999999999999999999999999999999998742 234555677788888777
Q ss_pred CCCCcEEEEeeCCCCCC----CC----------------CHHHHH----hHhCcCcccC---cceeEEEeeecCCCCHHH
Q 030008 119 LSGIPLLVLGNKIDKPG----AL----------------SKQALT----DEMGLKSITD---REVCCFMISCKNSTNIDS 171 (184)
Q Consensus 119 ~~~~~~iiv~nK~D~~~----~~----------------~~~~~~----~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~ 171 (184)
..+.|+|+++||.|+.. .. ..+... ..+....... ..+.++.++|.+..+++.
T Consensus 301 ~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~ 380 (389)
T PF00503_consen 301 FKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRK 380 (389)
T ss_dssp GTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHH
T ss_pred cccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHH
Confidence 77899999999999632 11 111111 1111111111 556788999999999999
Q ss_pred HHHHHHHhh
Q 030008 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~l 180 (184)
+|+.+.+.+
T Consensus 381 v~~~v~~~i 389 (389)
T PF00503_consen 381 VFNAVKDII 389 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhcCcC
Confidence 999987653
No 303
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.42 E-value=4.5e-13 Score=91.43 Aligned_cols=146 Identities=14% Similarity=0.222 Sum_probs=85.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC---CCC------------------C-CCCCccceeEEE-----------------E
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG---GYS------------------E-DMIPTVGFNMRK-----------------V 59 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~---~~~------------------~-~~~~t~~~~~~~-----------------~ 59 (184)
-+.|.+.|++|||||+|+-+++.. +++ . ...+..+..... .
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 379999999999999999987721 110 0 011111111110 0
Q ss_pred EeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhc-CCCCCCCcEEEEeeCCCCCCCCC
Q 030008 60 TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLN-KPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 60 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
.....++.|++..| .........+ ..+.-++|+|++.++.. ..+ ++.... .-++|+||.|+.+...
T Consensus 93 ~~~~~Dll~iEs~G--NL~~~~sp~L-~d~~~v~VidvteGe~~---------P~K~gP~i~~-aDllVInK~DLa~~v~ 159 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVCPFSPDL-GDHLRVVVIDVTEGEDI---------PRKGGPGIFK-ADLLVINKTDLAPYVG 159 (202)
T ss_pred cCCcCCEEEEecCc--ceecccCcch-hhceEEEEEECCCCCCC---------cccCCCceeE-eeEEEEehHHhHHHhC
Confidence 11124566767766 1111111111 12477899999887521 111 222222 6799999999987544
Q ss_pred H--HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 139 K--QALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 139 ~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
. +.+.+..+.. .+..+++++|+++|+|++++++++...+
T Consensus 160 ~dlevm~~da~~~---np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 160 ADLEVMARDAKEV---NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred ccHHHHHHHHHHh---CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 3 4444433322 4556899999999999999999987654
No 304
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.42 E-value=7.3e-13 Score=93.92 Aligned_cols=149 Identities=14% Similarity=0.180 Sum_probs=83.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCC--------CCCCccc--------eeEEEE--------------------E
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSE--------DMIPTVG--------FNMRKV--------------------T 60 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~--------~~~~t~~--------~~~~~~--------------------~ 60 (184)
.....|+++|+.|||||||++++...-... ....... .....+ .
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 456788999999999999999988431100 0000000 000000 0
Q ss_pred eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--
Q 030008 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-- 138 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-- 138 (184)
..+.++.++++.|.-.... .+....+..+.|+|+.+.+... .. ... ....|.++++||+|+.+...
T Consensus 100 ~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~-~~~------~~~~a~iiv~NK~Dl~~~~~~~ 167 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LK-YPG------MFKEADLIVINKADLAEAVGFD 167 (207)
T ss_pred cCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hh-hHh------HHhhCCEEEEEHHHccccchhh
Confidence 1134677777777211100 1111235556677776543211 10 011 12467899999999975322
Q ss_pred HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 139 KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
..+....... ....++++++||++|.|++++++++.+..
T Consensus 168 ~~~~~~~l~~---~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 168 VEKMKADAKK---INPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHHH---hCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 2233333221 12456899999999999999999998753
No 305
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.42 E-value=1e-12 Score=95.21 Aligned_cols=108 Identities=16% Similarity=0.173 Sum_probs=71.5
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQ 140 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~ 140 (184)
-++++.+++|.|.-+..-.+. .-+|.++++.=+.-++..+.+...+.++ .-|+|+||+|...... ..
T Consensus 142 aG~DvIIVETVGvGQsev~I~---~~aDt~~~v~~pg~GD~~Q~iK~GimEi---------aDi~vINKaD~~~A~~a~r 209 (323)
T COG1703 142 AGYDVIIVETVGVGQSEVDIA---NMADTFLVVMIPGAGDDLQGIKAGIMEI---------ADIIVINKADRKGAEKAAR 209 (323)
T ss_pred cCCCEEEEEecCCCcchhHHh---hhcceEEEEecCCCCcHHHHHHhhhhhh---------hheeeEeccChhhHHHHHH
Confidence 457799999988554443333 3479988888777777666665444443 3489999999543211 22
Q ss_pred HHHhHhCcC----cccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 141 ALTDEMGLK----SITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 141 ~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
++...+... ....+..|++.+||.+|+|++++++.|.+...
T Consensus 210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 233333222 22344568999999999999999999988754
No 306
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.41 E-value=1e-12 Score=96.27 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=41.4
Q ss_pred CCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 120 SGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 120 ~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
...+-++|+||+|+.+.. +.+.+.+.+. ......+++++||++|+|++++.++|...
T Consensus 229 f~~ADIVVLNKiDLl~~~~~dle~~~~~lr---~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 229 FAAASLMLLNKVDLLPYLNFDVEKCIACAR---EVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hhcCcEEEEEhHHcCcccHHHHHHHHHHHH---hhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 456779999999997532 2333333332 22345689999999999999999999764
No 307
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.38 E-value=1.7e-12 Score=92.15 Aligned_cols=151 Identities=19% Similarity=0.158 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC--CCCCCCCccceeEEEEEeCcEEEEEEecCCchhh-------HHhHHHHhccCCE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG--YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-------RSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~~~ 90 (184)
-+|.++|.|.+||||++..+.+.. .+...++|.......++++..++.+.|.||.-+- ..+.....+-|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 389999999999999999998532 3345556666666677788899999999994322 3344456678999
Q ss_pred EEEEEeCCCcCcHHHHHHH-------------------------------------------------------------
Q 030008 91 IVYVVDAADPDNLSISRSE------------------------------------------------------------- 109 (184)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~------------------------------------------------------------- 109 (184)
+++|.|+..|-+...+.+.
T Consensus 140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D 219 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD 219 (358)
T ss_pred EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence 9999999876433332111
Q ss_pred -HHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 110 -LHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 110 -~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
+...+... ..-+|++.+.||.|.+.- +++.-.+. -...+++||.+++|++++++.+++++.
T Consensus 220 dLIdvVegn-r~yVp~iyvLNkIdsISi---EELdii~~-------iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 220 DLIDVVEGN-RIYVPCIYVLNKIDSISI---EELDIIYT-------IPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhccC-ceeeeeeeeecccceeee---eccceeee-------ccceeecccccccchHHHHHHHhhcch
Confidence 11111111 123689999999997633 22222222 225889999999999999999998764
No 308
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=99.37 E-value=2e-12 Score=90.49 Aligned_cols=136 Identities=16% Similarity=0.261 Sum_probs=95.3
Q ss_pred CCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC----------cCcHHHHHHHHHHHhcC
Q 030008 47 DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------PDNLSISRSELHDLLNK 116 (184)
Q Consensus 47 ~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~ 116 (184)
...||.|+....++....-+.++|.+|+...+..|.+++.+...+++++.++. ....+.....+..++.+
T Consensus 182 vRvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~y 261 (359)
T KOG0085|consen 182 VRVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITY 261 (359)
T ss_pred eecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcc
Confidence 34567777777777788889999999999999999998888877777666553 23445556667778888
Q ss_pred CCCCCCcEEEEeeCCCCCCCCCH-----------------HHHHhHhC------cCcccCcceeEEEeeecCCCCHHHHH
Q 030008 117 PSLSGIPLLVLGNKIDKPGALSK-----------------QALTDEMG------LKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 117 ~~~~~~~~iiv~nK~D~~~~~~~-----------------~~~~~~~~------~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+...+.++|+..||.|+.++.-. .+..+++- .......-+.-++++|++-+|+.-+|
T Consensus 262 PWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVF 341 (359)
T KOG0085|consen 262 PWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVF 341 (359)
T ss_pred ccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHH
Confidence 88889999999999998753211 01111110 11111222345689999999999999
Q ss_pred HHHHHhhhc
Q 030008 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~l~~ 182 (184)
..+-+.+.+
T Consensus 342 aaVkDtiLq 350 (359)
T KOG0085|consen 342 AAVKDTILQ 350 (359)
T ss_pred HHHHHHHHH
Confidence 988776544
No 309
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.36 E-value=1.7e-11 Score=90.43 Aligned_cols=120 Identities=17% Similarity=0.252 Sum_probs=66.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCC----------CCccceeEE--EEEeC--cEEEEEEecCCchhh-------
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDM----------IPTVGFNMR--KVTKG--NVTIKLWDLGGQPRF------- 77 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~----------~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~------- 77 (184)
.++|+|+|..|+|||||||.|++....... .++...... .+... ...+.++||||....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999975543221 112222222 22222 367899999992210
Q ss_pred -------HHhHHHHh-------------ccCCEEEEEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 78 -------RSMWERYC-------------RAVSAIVYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 78 -------~~~~~~~~-------------~~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
......++ ...|+++|+++++... +..+. ..+..+- ..+++|.|+.|+|....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLS-----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHT-----TTSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhc-----ccccEEeEEecccccCH
Confidence 01111111 3358899999987532 22222 2333332 34899999999999865
Q ss_pred CCHHHHHh
Q 030008 137 LSKQALTD 144 (184)
Q Consensus 137 ~~~~~~~~ 144 (184)
.+...+..
T Consensus 158 ~el~~~k~ 165 (281)
T PF00735_consen 158 EELQAFKQ 165 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44433333
No 310
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.4e-11 Score=89.08 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=103.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc----------CC------CCCC--CCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT----------GG------YSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~----------~~------~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
.+++++|..+|+.+-|||||..+++. .. .+.. ..-|+......+...+.++..+|.||+..|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 46889999999999999999988772 00 1111 122333444445667789999999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCC-cEEEEeeCCCCCCCCCH-----HHHHhHhCcCcc
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGI-PLLVLGNKIDKPGALSK-----QALTDEMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iiv~nK~D~~~~~~~-----~~~~~~~~~~~~ 151 (184)
-.....-..+.|+.|+|+++.++.-. ...+.+. + .+.-+. .+++++||+|+.+..+. .++..-+.+..+
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmP-qTrEHiL--l--arqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMP-QTREHIL--L--ARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCC-cchhhhh--h--hhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 77777777789999999999886421 1222211 1 111245 56777899999874332 233333333444
Q ss_pred cCcceeEEEeeecCCC--------CHHHHHHHHHHhhh
Q 030008 152 TDREVCCFMISCKNST--------NIDSVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~--------~v~~l~~~i~~~l~ 181 (184)
.....|++.-||+..- -|.+|.+++.++++
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 4456678888877632 25666666666554
No 311
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.3e-11 Score=92.21 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=64.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEE------------------eCcEEEEEEecCC-----
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVT------------------KGNVTIKLWDLGG----- 73 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~------------------~~~~~~~~~D~~G----- 73 (184)
.++++++|-||+|||||+|+++.... ...+++|++++..... .....+.++|.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999997664 3568889997766531 1125689999998
Q ss_pred --chhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 74 --QPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 74 --~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
.+...+..-..++++|+++.|+|+..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 34557778888899999999999973
No 312
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.35 E-value=1.3e-10 Score=83.56 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=44.5
Q ss_pred EEEEEEecCCchh-------------hHHhHHHHhcc-CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEee
Q 030008 64 VTIKLWDLGGQPR-------------FRSMWERYCRA-VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGN 129 (184)
Q Consensus 64 ~~~~~~D~~G~~~-------------~~~~~~~~~~~-~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 129 (184)
.+++++|+||... ...+...++++ .+++++|+|+...-.-.........+ .....++++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----DPQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----HHcCCcEEEEEE
Confidence 5799999999532 12345567774 46899999986532211211222222 224689999999
Q ss_pred CCCCCCCC
Q 030008 130 KIDKPGAL 137 (184)
Q Consensus 130 K~D~~~~~ 137 (184)
|.|..+..
T Consensus 201 K~D~~~~~ 208 (240)
T smart00053 201 KLDLMDEG 208 (240)
T ss_pred CCCCCCcc
Confidence 99998643
No 313
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=5.8e-12 Score=100.58 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=100.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCC----CCccceeEEE----------------EEeCcEEEEEEecCCchhhH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDM----IPTVGFNMRK----------------VTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~----~~t~~~~~~~----------------~~~~~~~~~~~D~~G~~~~~ 78 (184)
..=++|+|+..+|||-|+..+-+....... ...++-++.. .+..-.-+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 356899999999999999988753332111 1111111111 11222348899999999999
Q ss_pred HhHHHHhccCCEEEEEEeCCCc---CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-C-----CH----------
Q 030008 79 SMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA-L-----SK---------- 139 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~-~-----~~---------- 139 (184)
++..+....||.+|+|+|+..+ ++.+.+. + .+..+.|+||++||+|-.-. . ..
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqtiESi~-----l---LR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-----L---LRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchhHHHH-----H---HHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 9999999999999999999765 3322221 2 23367999999999996421 1 00
Q ss_pred --HHHHhHh-------Cc------Cccc----CcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 140 --QALTDEM-------GL------KSIT----DREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 140 --~~~~~~~-------~~------~~~~----~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.++...+ .. ..+. .....++++||.+|+||-+|+-.|++..+
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 1111111 10 0111 12356899999999999999999887643
No 314
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=6.4e-12 Score=102.13 Aligned_cols=115 Identities=23% Similarity=0.269 Sum_probs=83.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC--CC------------------CCCCCccceeEEEEEeCc-EEEEEEecCCch
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG--YS------------------EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQP 75 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~--~~------------------~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~ 75 (184)
.+--+|+++|+..+|||||..+++... .. ....-|+......+.+.+ +.++++||||+-
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 455789999999999999999988211 11 011123333444566774 999999999999
Q ss_pred hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
.|.....+.++-+|++++|+|+..+-..+ ....|+.. ...++|.++++||+|....
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~Q-TEtv~rqa----~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQ-TETVWRQA----DKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeec-HHHHHHHH----hhcCCCeEEEEECcccccc
Confidence 99999999999999999999998763211 22333333 3357999999999998653
No 315
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.34 E-value=1.4e-11 Score=84.52 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=43.2
Q ss_pred EEEEEEecCCchh----hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 030008 64 VTIKLWDLGGQPR----FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 64 ~~~~~~D~~G~~~----~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 131 (184)
..+.++||||... ....+..+++.+|++++|.++....+-.....+.. .... ....+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~-~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQ-MLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHH-HHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHH-HhcC---CCCeEEEEEcCC
Confidence 3489999999532 23667888899999999999998654443333333 3332 234589999985
No 316
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.32 E-value=1.3e-10 Score=88.30 Aligned_cols=151 Identities=16% Similarity=0.177 Sum_probs=85.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC----CCC--------------CCCC---CccceeE---EEEE-----eCcEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG----GYS--------------EDMI---PTVGFNM---RKVT-----KGNVTIK 67 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~----~~~--------------~~~~---~t~~~~~---~~~~-----~~~~~~~ 67 (184)
.-.+.|+++|+.++|||||||+|+++ ... +... .|.++.+ ..+. .-..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45799999999999999999999977 322 1122 3333333 1121 2236899
Q ss_pred EEecCCchh--------hHH---------------------hHHHHhc-cCCEEEEEE-eCCC----cCcHHHHH-HHHH
Q 030008 68 LWDLGGQPR--------FRS---------------------MWERYCR-AVSAIVYVV-DAAD----PDNLSISR-SELH 111 (184)
Q Consensus 68 ~~D~~G~~~--------~~~---------------------~~~~~~~-~~~~ii~v~-d~~~----~~~~~~~~-~~~~ 111 (184)
++|++|... ... =+...+. .+++.++|. |.+- ++...... .++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999999211 111 0334455 789999888 7751 12232332 3333
Q ss_pred HHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCC--CCHHHHHHHH
Q 030008 112 DLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNS--TNIDSVIDWL 176 (184)
Q Consensus 112 ~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~v~~l~~~i 176 (184)
.+ +. .++|+++|+||.|-.... ..++...+... .+.+++++|+..- +.+..+++.+
T Consensus 175 eL-k~---~~kPfiivlN~~dp~~~e-t~~l~~~l~ek----y~vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 175 EL-KE---LNKPFIILLNSTHPYHPE-TEALRQELEEK----YDVPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred HH-Hh---cCCCEEEEEECcCCCCch-hHHHHHHHHHH----hCCceEEEEHHHcCHHHHHHHHHHH
Confidence 33 22 479999999999943222 22222222111 1235677776653 2344444443
No 317
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.30 E-value=2.1e-10 Score=84.11 Aligned_cols=177 Identities=18% Similarity=0.242 Sum_probs=113.2
Q ss_pred hHHHHHHHHHhhc---ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeC----cEEEEEEecCCch
Q 030008 3 LWEAFLNWLRSLF---FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKG----NVTIKLWDLGGQP 75 (184)
Q Consensus 3 ~~~~~~~~~~~~~---~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~D~~G~~ 75 (184)
+|..++...+-.. ++..-+|+++|+.++||||||.++.+.. .....+-.++.+..+..+ -..+.+|-.-|..
T Consensus 33 lWs~iLsev~T~~~sklpsgk~VlvlGdn~sGKtsLi~klqg~e-~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~ 111 (473)
T KOG3905|consen 33 LWSEILSEVSTRTRSKLPSGKNVLVLGDNGSGKTSLISKLQGSE-TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDL 111 (473)
T ss_pred HHHHHHHHhhhcccccCCCCCeEEEEccCCCchhHHHHHhhccc-ccCCCCCcceEEEecccccchhhhhcceEEecCch
Confidence 6667776554333 2456799999999999999999997544 345555555555555432 2568899998977
Q ss_pred hhHHhHHHHhccC----CEEEEEEeCCCcCcH-HHHHHH----------------------------HHHHhcC------
Q 030008 76 RFRSMWERYCRAV----SAIVYVVDAADPDNL-SISRSE----------------------------LHDLLNK------ 116 (184)
Q Consensus 76 ~~~~~~~~~~~~~----~~ii~v~d~~~~~~~-~~~~~~----------------------------~~~~~~~------ 116 (184)
-...+....+... ..+|++.|.+++.+. +.+..| |++++.-
T Consensus 112 ~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pg 191 (473)
T KOG3905|consen 112 YHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPG 191 (473)
T ss_pred hhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCC
Confidence 6666666554332 457899999988322 222222 1111110
Q ss_pred --------------------------CCCCCCcEEEEeeCCCCCC-----CCCHHH---HHhHhCcCcccCcceeEEEee
Q 030008 117 --------------------------PSLSGIPLLVLGNKIDKPG-----ALSKQA---LTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 117 --------------------------~~~~~~~~iiv~nK~D~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~S 162 (184)
...-++|+++|+||+|... +.-.++ +.+.+...+....+...+.+|
T Consensus 192 sp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTS 271 (473)
T KOG3905|consen 192 SPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTS 271 (473)
T ss_pred CcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEee
Confidence 0112578999999999843 111221 222222233345677899999
Q ss_pred ecCCCCHHHHHHHHHHhh
Q 030008 163 CKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l 180 (184)
++...|++-+..+|...+
T Consensus 272 vKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 272 VKETKNIDLLYKYIVHRS 289 (473)
T ss_pred cccccchHHHHHHHHHHh
Confidence 999999999999998764
No 318
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.29 E-value=5.1e-12 Score=82.10 Aligned_cols=114 Identities=16% Similarity=0.109 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCC-CccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMI-PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
++|+++|+.|+|||+|+.++....+...+. +|.+ +........+.++.++.|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 489999999999999999998666654333 3333 2222334557789999999999
Q ss_pred CcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 99 DPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
..+++... |...+... .....|.++++||.|+.+.. ++.... ..+++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~---~~~~~~--------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEER---QVATEE--------GLEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhC---cCCHHH--------HHHHHHHhCCCcchhh
Confidence 98877654 44444332 33568899999999974321 111111 1136678999999875
No 319
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.29 E-value=2.3e-11 Score=89.08 Aligned_cols=77 Identities=27% Similarity=0.364 Sum_probs=57.3
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCc-----------------EEEEEEecCCch-------
Q 030008 22 LSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQP------- 75 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~------- 75 (184)
|+++|.||+|||||+|++++.... ..+++|+......+...+ ..+.++|+||..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999976653 346677776666554333 259999999932
Q ss_pred hhHHhHHHHhccCCEEEEEEeCC
Q 030008 76 RFRSMWERYCRAVSAIVYVVDAA 98 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~ii~v~d~~ 98 (184)
.........++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 22334555678899999999985
No 320
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.28 E-value=2e-10 Score=89.94 Aligned_cols=176 Identities=19% Similarity=0.297 Sum_probs=110.3
Q ss_pred hHHHHHHHHHhh---cccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccce--eEEEEEe----CcEEEEEEecCC
Q 030008 3 LWEAFLNWLRSL---FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGF--NMRKVTK----GNVTIKLWDLGG 73 (184)
Q Consensus 3 ~~~~~~~~~~~~---~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~--~~~~~~~----~~~~~~~~D~~G 73 (184)
+|..++...+.. ....+-+|+|+|..++|||||+.+|.+.. .+.++.+. .+..+.. +...+.+|-..|
T Consensus 6 lW~siL~ev~~~~~~~~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g 82 (472)
T PF05783_consen 6 LWSSILSEVSNSSSTKLPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDG 82 (472)
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCC
Confidence 677778776532 23456799999999999999999986432 23344444 3333322 124689999988
Q ss_pred chhhHHhHHHHhccC----CEEEEEEeCCCcCcHH-HHHHH----------------------------HHHHhc---CC
Q 030008 74 QPRFRSMWERYCRAV----SAIVYVVDAADPDNLS-ISRSE----------------------------LHDLLN---KP 117 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~----~~ii~v~d~~~~~~~~-~~~~~----------------------------~~~~~~---~~ 117 (184)
...+..++...+... -++++|+|.+.|..+- .+..| +..+.. ..
T Consensus 83 ~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~ 162 (472)
T PF05783_consen 83 DPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSS 162 (472)
T ss_pred CcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccc
Confidence 777777766555432 4589999999884332 11111 111110 00
Q ss_pred ------------------------------CCCCCcEEEEeeCCCCCCCCCH-----H---HHHhHhCcCcccCcceeEE
Q 030008 118 ------------------------------SLSGIPLLVLGNKIDKPGALSK-----Q---ALTDEMGLKSITDREVCCF 159 (184)
Q Consensus 118 ------------------------------~~~~~~~iiv~nK~D~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~ 159 (184)
..-++|++||++|+|.....+. + .+...+........++.++
T Consensus 163 ~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~ 242 (472)
T PF05783_consen 163 DSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLI 242 (472)
T ss_pred cccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEE
Confidence 0013799999999997532111 1 1222222233345677799
Q ss_pred EeeecCCCCHHHHHHHHHHhhh
Q 030008 160 MISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.||++...+++.|+.+|...+.
T Consensus 243 yts~~~~~n~~~L~~yi~h~l~ 264 (472)
T PF05783_consen 243 YTSVKEEKNLDLLYKYILHRLY 264 (472)
T ss_pred EeeccccccHHHHHHHHHHHhc
Confidence 9999999999999999887764
No 321
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.27 E-value=1.7e-11 Score=85.67 Aligned_cols=146 Identities=21% Similarity=0.318 Sum_probs=96.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEE-eCcEEEEEEecCCchhhHHh-----HHHHhccCC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVT-KGNVTIKLWDLGGQPRFRSM-----WERYCRAVS 89 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~-----~~~~~~~~~ 89 (184)
.-||+++|..||||||+-..++.+-. ......|++....+++ .++..+.+||.+|++.+... -...+++.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 35899999999999998776663332 2345566666666665 35588999999999866433 334678899
Q ss_pred EEEEEEeCCCcCcHHHH---HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCc---ccCcceeEEEeee
Q 030008 90 AIVYVVDAADPDNLSIS---RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS---ITDREVCCFMISC 163 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Sa 163 (184)
++++|||+...+-..++ ...+..++... +...+.+..+|+|+.+....+.+-+...... ....++.++++|.
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999877533333 23334444332 4567888899999987665544433332211 1233466788887
Q ss_pred cCC
Q 030008 164 KNS 166 (184)
Q Consensus 164 ~~~ 166 (184)
.+-
T Consensus 162 wDe 164 (295)
T KOG3886|consen 162 WDE 164 (295)
T ss_pred hhH
Confidence 664
No 322
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.27 E-value=2.4e-10 Score=89.40 Aligned_cols=151 Identities=17% Similarity=0.256 Sum_probs=102.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccc--eeEEEE--EeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~--~~~~~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++-+++.++|+.++|||.+++++.++.+.+....+.. +....+ ......+.+.|.+-. ......... ..||+++
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 5668999999999999999999999888764433333 222222 233456677777653 222222222 6789999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-----CCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA-----LSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++||.+++.+++.+...+...... ...|+++|++|+|+.+. ..+.++..+++.. +.+.+|.....
T Consensus 501 ~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~-------~P~~~S~~~~~ 570 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP-------PPIHISSKTLS 570 (625)
T ss_pred EecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-------CCeeeccCCCC
Confidence 999999999999888766654333 67999999999998542 2346677776654 34555655322
Q ss_pred CHHHHHHHHHHhh
Q 030008 168 NIDSVIDWLVKHS 180 (184)
Q Consensus 168 ~v~~l~~~i~~~l 180 (184)
. .++|..|..+.
T Consensus 571 s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 571 S-NELFIKLATMA 582 (625)
T ss_pred C-chHHHHHHHhh
Confidence 2 78888887654
No 323
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.25 E-value=2.4e-10 Score=91.47 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=72.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC-CCC--CCCccceeEEEEEeCcEEEEEEecCCchhh----------HHhHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY-SED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF----------RSMWERY 84 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~-~~~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~ 84 (184)
..++|+++|.+|+||||++|++++... ... ...|...........+..+.++||||.... ...+..+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 457999999999999999999997653 222 123333322223345678999999995432 1112223
Q ss_pred hc--cCCEEEEEEeCCCcCcH-H--HHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 85 CR--AVSAIVYVVDAADPDNL-S--ISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 85 ~~--~~~~ii~v~d~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+. .+|++++|..+...... . .....+..++... .-...|||+|+.|..+
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~--Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS--IWFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH--hHcCEEEEEeCCccCC
Confidence 33 47999999887533221 1 2233344444321 1258899999999875
No 324
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.23 E-value=2.4e-11 Score=88.16 Aligned_cols=95 Identities=21% Similarity=0.169 Sum_probs=71.3
Q ss_pred hhhHHhHHHHhccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-HHHhHhCcCccc
Q 030008 75 PRFRSMWERYCRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ-ALTDEMGLKSIT 152 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~ 152 (184)
+++..+...++.++|.+++|+|+.+++ ++..+..|+..+.. .++|+++|+||+|+.+..... +..+.+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~----- 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR----- 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-----
Confidence 556666667899999999999999887 88888888765432 469999999999996432221 2222221
Q ss_pred CcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 153 DREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
..+.+++++||++|.|++++++.+..
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 23457999999999999999988754
No 325
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.23 E-value=3.2e-11 Score=90.09 Aligned_cols=157 Identities=19% Similarity=0.208 Sum_probs=99.5
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcc----------------ceeEEE--E------------------
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTV----------------GFNMRK--V------------------ 59 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~----------------~~~~~~--~------------------ 59 (184)
.+.++.|+..|+.+.|||||...|..+...+....|. ...... +
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4678999999999999999999887544332222111 111111 1
Q ss_pred ---EeCcEEEEEEecCCchhhHHhHHHHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 60 ---TKGNVTIKLWDLGGQPRFRSMWERYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 60 ---~~~~~~~~~~D~~G~~~~~~~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
...+.-+.++||.|++.+.....+-+ ++.|..++++.++++-+ ... .+-+........|+|+|+||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~t---kEHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMT---KEHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhh---hHhhhhhhhhcCCEEEEEEecccC
Confidence 11224588999999999977655543 67899999999998732 111 222222222469999999999998
Q ss_pred CCCCHHHHHhHhCc-------C-----------------cccCcceeEEEeeecCCCCHHHHHHHHH
Q 030008 135 GALSKQALTDEMGL-------K-----------------SITDREVCCFMISCKNSTNIDSVIDWLV 177 (184)
Q Consensus 135 ~~~~~~~~~~~~~~-------~-----------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
+....+...++... . .....-.|+|.+|+.+|+|++-|.+.+.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 65443222222211 0 0011236899999999999987665544
No 326
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=99.21 E-value=5.1e-11 Score=84.84 Aligned_cols=132 Identities=20% Similarity=0.234 Sum_probs=89.8
Q ss_pred ccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC----------cHHHHHHHHHHHhcCCCCC
Q 030008 51 TVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD----------NLSISRSELHDLLNKPSLS 120 (184)
Q Consensus 51 t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~ 120 (184)
|.|+....++.+.++|.++|.+||...+..|...+....++++|+.++.-+ .+......+..+.+.....
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 455556667778889999999999999999999999999999999987431 2222333445555544446
Q ss_pred CCcEEEEeeCCCCCCCCC------HHHHHhHhC----------------------------------cCcccCcceeEEE
Q 030008 121 GIPLLVLGNKIDKPGALS------KQALTDEMG----------------------------------LKSITDREVCCFM 160 (184)
Q Consensus 121 ~~~~iiv~nK~D~~~~~~------~~~~~~~~~----------------------------------~~~~~~~~~~~~~ 160 (184)
.+.+|+..||.|+..+.- .+.+-.++. ...--.+.+.+++
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 789999999999753210 000000000 0001123466789
Q ss_pred eeecCCCCHHHHHHHHHHhhhc
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
++|.+-++|..+|....+.+.+
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQR 370 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHH
Confidence 9999999999999987776654
No 327
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=9.8e-11 Score=92.81 Aligned_cols=112 Identities=21% Similarity=0.288 Sum_probs=78.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcc---------------ceeE----EE-----EEeCcEEEEEEecCC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTV---------------GFNM----RK-----VTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~---------------~~~~----~~-----~~~~~~~~~~~D~~G 73 (184)
.-.+|+++|+-.+|||+|+.-|..+..++....+. ++.. .. .....+-+++.||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 34689999999999999999888554432211110 0110 01 123447799999999
Q ss_pred chhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
+-.+.......++.+|++++++|+.++-.+.. ...+.... ....|+.+|+||+|..
T Consensus 207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai----q~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI----QNRLPIVVVINKVDRL 262 (971)
T ss_pred cccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH----hccCcEEEEEehhHHH
Confidence 99999999999999999999999998743322 22233332 2469999999999963
No 328
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=5e-10 Score=78.96 Aligned_cols=141 Identities=14% Similarity=0.226 Sum_probs=84.7
Q ss_pred HHHHHHHHhhcccc--eeEEEEEcCCCCChHHHHHHHHcCCCCCC---------CCCcccee--EEEEEeCc--EEEEEE
Q 030008 5 EAFLNWLRSLFFKQ--EMELSLIGLQNAGKTSLVNVVATGGYSED---------MIPTVGFN--MRKVTKGN--VTIKLW 69 (184)
Q Consensus 5 ~~~~~~~~~~~~~~--~~~v~i~G~~~sGKStli~~l~~~~~~~~---------~~~t~~~~--~~~~~~~~--~~~~~~ 69 (184)
..+..+++...++. +++|+++|..|.|||||+|+++.....+. ...|.++. ...+..++ .+++++
T Consensus 30 dtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltvi 109 (336)
T KOG1547|consen 30 DTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVI 109 (336)
T ss_pred HHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEe
Confidence 67777777777665 58999999999999999999885333221 11233322 12233344 568899
Q ss_pred ecCCchh---h-----------HHhHHH------------Hh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCC
Q 030008 70 DLGGQPR---F-----------RSMWER------------YC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSG 121 (184)
Q Consensus 70 D~~G~~~---~-----------~~~~~~------------~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (184)
||||... . ..+... .+ ...++++|.+.++..+ +..+.-.+..-+. .-
T Consensus 110 DTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt----~v 184 (336)
T KOG1547|consen 110 DTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLT----EV 184 (336)
T ss_pred cCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHh----hh
Confidence 9999211 1 111111 12 3357788888887542 3333222221111 34
Q ss_pred CcEEEEeeCCCCCCCCCHHHHHhHhCcCc
Q 030008 122 IPLLVLGNKIDKPGALSKQALTDEMGLKS 150 (184)
Q Consensus 122 ~~~iiv~nK~D~~~~~~~~~~~~~~~~~~ 150 (184)
+.++-|+-|+|...-.++.++.+.+....
T Consensus 185 vNvvPVIakaDtlTleEr~~FkqrI~~el 213 (336)
T KOG1547|consen 185 VNVVPVIAKADTLTLEERSAFKQRIRKEL 213 (336)
T ss_pred heeeeeEeecccccHHHHHHHHHHHHHHH
Confidence 78899999999887666666666655433
No 329
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.17 E-value=1.4e-10 Score=84.99 Aligned_cols=149 Identities=17% Similarity=0.236 Sum_probs=94.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCc-EEEEEEecCCch---------hhHHhHHHHh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQP---------RFRSMWERYC 85 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~---------~~~~~~~~~~ 85 (184)
....|.++|-.|||||||+++++..... ...+.|.++........+ ..+.+.||-|.- .|..... ..
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLe-eV 255 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLE-EV 255 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHH-HH
Confidence 4468999999999999999999954432 235567666555444333 457788999932 2222222 34
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCC----cEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEe
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGI----PLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
..+|.++.|.|+++|+........+ ..++...-... ..+=|=||+|..+.....+ .+ .-+.+
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl-~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E----------~n---~~v~i 321 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVL-HVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----------KN---LDVGI 321 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHH-HHHHhcCCCcHHHHhHHHhhccccccccccCccc----------cC---Ccccc
Confidence 6789999999999996443333322 23333222222 3456678888754322111 11 15789
Q ss_pred eecCCCCHHHHHHHHHHhhh
Q 030008 162 SCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~ 181 (184)
||.+|+|++++.+.+-..+.
T Consensus 322 saltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 322 SALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccccCccHHHHHHHHHHHhh
Confidence 99999999999998877653
No 330
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.14 E-value=1.5e-09 Score=80.89 Aligned_cols=120 Identities=17% Similarity=0.298 Sum_probs=72.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCC----------CCCccceeEEE--EEeCc--EEEEEEecCCchhh------
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSED----------MIPTVGFNMRK--VTKGN--VTIKLWDLGGQPRF------ 77 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~----------~~~t~~~~~~~--~~~~~--~~~~~~D~~G~~~~------ 77 (184)
-.++|+++|+.|+|||||+|+|+++..... ..+++.+.... +..++ ..++++||||....
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 468999999999999999999997633221 22333333332 22333 67889999992211
Q ss_pred --------HHhHHHHh--------------ccCCEEEEEEeCCCcCcHHHHHH-HHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 78 --------RSMWERYC--------------RAVSAIVYVVDAADPDNLSISRS-ELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 78 --------~~~~~~~~--------------~~~~~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
..+...++ ...++++|.+.++... +..+.- .+..+. ..+.+|.|+.|+|..
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~l 175 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLS-----KRVNLIPVIAKADTL 175 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHh-----cccCeeeeeeccccC
Confidence 11222222 3458899999876542 333322 222222 358899999999998
Q ss_pred CCCCHHHHH
Q 030008 135 GALSKQALT 143 (184)
Q Consensus 135 ~~~~~~~~~ 143 (184)
...+...+.
T Consensus 176 T~~El~~~K 184 (373)
T COG5019 176 TDDELAEFK 184 (373)
T ss_pred CHHHHHHHH
Confidence 655544333
No 331
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=8.7e-10 Score=77.84 Aligned_cols=159 Identities=21% Similarity=0.314 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCC---CCCccceeEEEEEeCcEEEEEEecCCchhh---HHhHHHHhccCCEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF---RSMWERYCRAVSAIVY 93 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---~~~~~~~~~~~~~ii~ 93 (184)
.+|+++|...|||||+-.-..++..+.. ..+|..+...++...-.++.+||.|||..+ ..-....++++.+.++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 5699999999999998776665444322 123333444445555678999999998655 2335677899999999
Q ss_pred EEeCCCc--CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-H-------HHHhHhCcCcccCcceeEEEeee
Q 030008 94 VVDAADP--DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-Q-------ALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 94 v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
|+|+.+. +.+..+...+.. .+.-.+++.+=+.+.|+|..++... + .....+...........++.+|-
T Consensus 108 vIDaQddy~eala~L~~~v~r--aykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 108 VIDAQDDYMEALARLHMTVER--AYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEechHHHHHHHHHHHHHhhh--eeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 9999865 222222222221 2234467888999999997653221 1 11112222222334567888998
Q ss_pred cCCCCHHHHHHHHHHhhh
Q 030008 164 KNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~ 181 (184)
.+-. +=+.|..+++.|.
T Consensus 186 yDHS-IfEAFSkvVQkLi 202 (347)
T KOG3887|consen 186 YDHS-IFEAFSKVVQKLI 202 (347)
T ss_pred cchH-HHHHHHHHHHHHh
Confidence 8764 6666666665543
No 332
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.10 E-value=6.6e-10 Score=75.31 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=63.6
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcce
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREV 156 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
++.+..+..+++|++++|+|+.++..... ..+...... .++|+++|+||+|+.+......+. .+. ...+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~-~~~----~~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWK-SIK----ESEGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHH-HHH----HhCCC
Confidence 35667778888999999999987643222 112222221 358999999999986432222211 111 11234
Q ss_pred eEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 157 CCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+++++||+++.|++++++.|.+.++.
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHHhh
Confidence 68999999999999999999887653
No 333
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=3.8e-09 Score=79.28 Aligned_cols=115 Identities=19% Similarity=0.286 Sum_probs=70.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCC---------CCCccceeEEEE--EeCc--EEEEEEecCCchhh--------
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSED---------MIPTVGFNMRKV--TKGN--VTIKLWDLGGQPRF-------- 77 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~---------~~~t~~~~~~~~--~~~~--~~~~~~D~~G~~~~-------- 77 (184)
.++++++|+.|.|||||||+|+....... +..|........ ..++ ..++++||||....
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48999999999999999999986644322 222333333332 2222 56889999992211
Q ss_pred ------HHhHHHHh-------------ccCCEEEEEEeCCCcCcHHHHHHH-HHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 030008 78 ------RSMWERYC-------------RAVSAIVYVVDAADPDNLSISRSE-LHDLLNKPSLSGIPLLVLGNKIDKPGAL 137 (184)
Q Consensus 78 ------~~~~~~~~-------------~~~~~ii~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 137 (184)
.+....++ ...++++|.+.++..- +..+.-. ...+ . ..+++|-|+.|+|.....
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l-~----~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKL-S----KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHH-h----ccccccceeeccccCCHH
Confidence 12222222 2568899999886531 2222211 2222 1 468999999999987654
Q ss_pred CH
Q 030008 138 SK 139 (184)
Q Consensus 138 ~~ 139 (184)
+.
T Consensus 175 El 176 (366)
T KOG2655|consen 175 EL 176 (366)
T ss_pred HH
Confidence 43
No 334
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.07 E-value=4.2e-10 Score=78.78 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=64.3
Q ss_pred hhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH-HHhHh---CcCc
Q 030008 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA-LTDEM---GLKS 150 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~-~~~~~---~~~~ 150 (184)
..+..++..+++++|++++|+|+.++... ... .+... ..++|+++|+||+|+.+.....+ ..... ....
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~~--~~~---~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPGS--LIP---RLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCCc--cch---hHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhh
Confidence 33577888899999999999999876411 111 11111 13589999999999975433221 11111 0000
Q ss_pred ccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 151 ITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 151 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
......+++++||++++|++++++.|.+.+.
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 1111125899999999999999999988764
No 335
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.1e-09 Score=85.57 Aligned_cols=147 Identities=20% Similarity=0.320 Sum_probs=87.3
Q ss_pred hcccceeEEEEEcCCCCChHHHHHHHHcCCC-CCCCCCccceeE------------------------------------
Q 030008 14 LFFKQEMELSLIGLQNAGKTSLVNVVATGGY-SEDMIPTVGFNM------------------------------------ 56 (184)
Q Consensus 14 ~~~~~~~~v~i~G~~~sGKStli~~l~~~~~-~~~~~~t~~~~~------------------------------------ 56 (184)
...+...+|++.|..++||||++|+++.++. +....+++.+..
T Consensus 104 ~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 104 VLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPD 183 (749)
T ss_pred HHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcc
Confidence 3446789999999999999999999994432 111222211100
Q ss_pred --------EEEEeC-------cEEEEEEecCCc---hhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCC
Q 030008 57 --------RKVTKG-------NVTIKLWDLGGQ---PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPS 118 (184)
Q Consensus 57 --------~~~~~~-------~~~~~~~D~~G~---~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 118 (184)
-.+-.. ..++.++|.||. ......+..+..++|++|+|.++.+.-+ .... .++....
T Consensus 184 ~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt--~sek---~Ff~~vs 258 (749)
T KOG0448|consen 184 KDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLT--LSEK---QFFHKVS 258 (749)
T ss_pred cccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhH--HHHH---HHHHHhh
Confidence 000000 126899999994 3445666677889999999998877632 2222 2233333
Q ss_pred CCCCcEEEEeeCCCCCCCCC--HHHHHh---HhCcCcccCcceeEEEeeecC
Q 030008 119 LSGIPLLVLGNKIDKPGALS--KQALTD---EMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 119 ~~~~~~iiv~nK~D~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
..+..+.|+.||+|...... .+.+.. .++...++...-.+|++||+.
T Consensus 259 ~~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 259 EEKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred ccCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 34667788889999864322 122222 233333333444688899554
No 336
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.2e-10 Score=83.39 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=79.7
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHH
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALT 143 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~ 143 (184)
.++.|+|.||++-.....-.-..-.|++++++..+.++......+.+..+-- ..-+.++++-||+|+..+....+..
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaavei---M~LkhiiilQNKiDli~e~~A~eq~ 201 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEI---MKLKHIIILQNKIDLIKESQALEQH 201 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHH---hhhceEEEEechhhhhhHHHHHHHH
Confidence 4689999999887766655555566889999998876544444444433211 1237889999999998665543333
Q ss_pred hHhC-c-CcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 144 DEMG-L-KSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 144 ~~~~-~-~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
+.+. . ......++|++++||.-+.|++-+.++|+..++
T Consensus 202 e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 202 EQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 2222 1 112234679999999999999999999998765
No 337
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.03 E-value=1.8e-09 Score=73.28 Aligned_cols=53 Identities=25% Similarity=0.308 Sum_probs=36.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G 73 (184)
..++|+++|.+|+|||||+|++.+.... ..+..|..... +.. +..+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITL-MKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--EEc-CCCEEEEECcC
Confidence 5688999999999999999999865432 12222333222 222 23488999999
No 338
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=3e-09 Score=78.56 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=101.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc----------CC------CCCCCCCccceeEEEE--EeCcEEEEEEecCCchhhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT----------GG------YSEDMIPTVGFNMRKV--TKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~----------~~------~~~~~~~t~~~~~~~~--~~~~~~~~~~D~~G~~~~~ 78 (184)
+++++|.-+|+..-|||||-.++.. .+ .+.....-+.++..++ .....++--.|.||+-.|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 5789999999999999999888772 01 1111222222344444 4455788999999999987
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-----HHHHhHhCcCcccC
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-----QALTDEMGLKSITD 153 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~ 153 (184)
.....-..+.|++|+|+.++++. .....+.+.-. ++. .-..+++.+||.|..+..+. -++.+.+.+..+..
T Consensus 132 KNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLA-rQV--GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGP-MPQTREHLLLA-RQV--GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCC-CcchHHHHHHH-HHc--CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 77777777889999999999875 22333333221 121 12567888899999854432 23333444445556
Q ss_pred cceeEEEeeec---CCC----C---HHHHHHHHHHhh
Q 030008 154 REVCCFMISCK---NST----N---IDSVIDWLVKHS 180 (184)
Q Consensus 154 ~~~~~~~~Sa~---~~~----~---v~~l~~~i~~~l 180 (184)
...|++.-||+ .|. | |..|++.+-+++
T Consensus 208 d~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 208 DNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred CCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 66788876654 442 2 555566655544
No 339
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.01 E-value=3.5e-10 Score=87.93 Aligned_cols=160 Identities=21% Similarity=0.376 Sum_probs=112.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+++|++|+|..++|||+|+++++.+.+.....|.-+..... +..+...+.+.|.+|.. ...+....|++|+|+
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf 103 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVF 103 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEE
Confidence 67999999999999999999999888877666655533332 33455667788888732 223445689999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
...+.++++.+..+...+..+.....+|++.++++.-.............-.........+.++++++..|-+++.+|..
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~ 183 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQE 183 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHH
Confidence 99999999998887777766655566899999988644222111111111111222334457999999999999999999
Q ss_pred HHHhhhc
Q 030008 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~l~~ 182 (184)
+...+..
T Consensus 184 ~~~k~i~ 190 (749)
T KOG0705|consen 184 VAQKIVQ 190 (749)
T ss_pred HHHHHHH
Confidence 8876543
No 340
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.01 E-value=1.3e-09 Score=78.31 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=93.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC-ccc-eeEEEEEeCcEEEEEEecCCc----------hhhHHhHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIP-TVG-FNMRKVTKGNVTIKLWDLGGQ----------PRFRSMWERY 84 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~-t~~-~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~~~~ 84 (184)
....+++++|..|+|||||+|-+++......... +.+ ........-+..+.++|.||. ..+......+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 4568999999999999999999987554333222 222 222222233457999999991 2334455555
Q ss_pred hccC---CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC------HHHHHhHhC-c-CcccC
Q 030008 85 CRAV---SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS------KQALTDEMG-L-KSITD 153 (184)
Q Consensus 85 ~~~~---~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------~~~~~~~~~-~-~~~~~ 153 (184)
+.+. -.+++.+|+.-+ +........+++.. .++|..+|+||+|...... ...+...+. . .....
T Consensus 214 ~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~ 288 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFL 288 (320)
T ss_pred HHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcccccee
Confidence 5332 335666777644 22222222333333 5799999999999864322 011111011 0 11122
Q ss_pred cceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 154 REVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
...|++.+|+.++.|++.|+-.|.+.
T Consensus 289 ~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 289 VDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccCCceeeecccccCceeeeeehhhh
Confidence 33467889999999999987666543
No 341
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.01 E-value=2.1e-09 Score=73.88 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=37.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G 73 (184)
..++++++|.||+|||||+|++.+.... ..+..|.......+ +..+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcC
Confidence 4589999999999999999999975542 22333443333322 23689999999
No 342
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.00 E-value=4e-09 Score=79.98 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=61.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC-C--CCCCCccceeEEEEEeCc-----------------EEEEEEecCCchh---
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY-S--EDMIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQPR--- 76 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~-~--~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~--- 76 (184)
++++++|.||+|||||++++++... . ..+++|..+....+...+ ..+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999997765 3 346677776665544322 4689999999432
Q ss_pred ----hHHhHHHHhccCCEEEEEEeCCC
Q 030008 77 ----FRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 77 ----~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
.....-..++++|++++|+++.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 34566778899999999999963
No 343
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=2.2e-09 Score=86.28 Aligned_cols=106 Identities=24% Similarity=0.292 Sum_probs=74.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC--CCC------------CCCccceeEE----EEEeCcEEEEEEecCCchhhHHh
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY--SED------------MIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~--~~~------------~~~t~~~~~~----~~~~~~~~~~~~D~~G~~~~~~~ 80 (184)
--+++++.+..-|||||...+..... ++. -..+.+++.. ..-.+++.++++|+||+..|...
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se 88 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE 88 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence 35789999999999999999883221 100 0112222211 12247789999999999999999
Q ss_pred HHHHhccCCEEEEEEeCCCcC---cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 030008 81 WERYCRAVSAIVYVVDAADPD---NLSISRSELHDLLNKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 132 (184)
......-+|++++++|+..+- +..-+++.|. .+...++|+||+|
T Consensus 89 vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~--------~~~~~~lvinkid 135 (887)
T KOG0467|consen 89 VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI--------EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH--------ccCceEEEEehhh
Confidence 999999999999999998762 2222222222 3567789999999
No 344
>PRK12289 GTPase RsgA; Reviewed
Probab=98.95 E-value=3.6e-09 Score=80.35 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=62.5
Q ss_pred HHHHhccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEE
Q 030008 81 WERYCRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCF 159 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
....+.++|.+++|+|+.++. ....+..++.... ..++|+++|+||+|+.+......+...+. ..+.+++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~~-----~~g~~v~ 153 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRLQ-----QWGYQPL 153 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHHH-----hcCCeEE
Confidence 344578999999999998775 3334455555442 24699999999999974433333333332 2234689
Q ss_pred EeeecCCCCHHHHHHHHHH
Q 030008 160 MISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~ 178 (184)
++||.++.|++++++.+..
T Consensus 154 ~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 154 FISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEEcCCCCCHHHHhhhhcc
Confidence 9999999999999988764
No 345
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.94 E-value=3.7e-09 Score=73.98 Aligned_cols=65 Identities=26% Similarity=0.373 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCC-----------CCCCCccceeEEEEEeCcEEEEEEecCC
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYS-----------EDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~-----------~~~~~t~~~~~~~~~~~~~~~~~~D~~G 73 (184)
+.+++++.... +...+++++|.+|+|||||+|++.+.... ..+.+|.......+ +. .+.++||||
T Consensus 114 ~eL~~~l~~~l-~~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~~-~~~~~DtPG 189 (190)
T cd01855 114 EELINAIKKLA-KKGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL--GN-GKKLYDTPG 189 (190)
T ss_pred HHHHHHHHHHh-hcCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec--CC-CCEEEeCcC
Confidence 45555555443 35678999999999999999999964321 12223333332223 21 589999999
No 346
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=1.2e-09 Score=81.72 Aligned_cols=153 Identities=20% Similarity=0.295 Sum_probs=94.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCC-----------------------CccceeE-------EE-------EEe
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMI-----------------------PTVGFNM-------RK-------VTK 61 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~-----------------------~t~~~~~-------~~-------~~~ 61 (184)
+++|+++|...+|||||+.-+.++....... .++++.. .. .+.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 5899999999999999998877443221111 1111110 00 011
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhcc--CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRA--VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK 139 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~--~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~ 139 (184)
...-++++|.+|+.+|.......+.. .+.+++|+++..+.+... .+.+ .+... -++|++++++|+|+.+....
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHL-gl~~A---L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHL-GLIAA---LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHH-HHHHH---hCCCeEEEEEeeccccchhH
Confidence 22458999999999998766554433 588999999987632111 1111 12211 36999999999999876443
Q ss_pred HHHHhHhCc-------------------------CcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 140 QALTDEMGL-------------------------KSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 140 ~~~~~~~~~-------------------------~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+...+++.. ......-.|+|.+|+.+|+|++-+...+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 322222211 1112334689999999999988765544
No 347
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.94 E-value=4.4e-09 Score=71.35 Aligned_cols=91 Identities=20% Similarity=0.203 Sum_probs=59.7
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEee
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
..+..+|++++|+|+.++... ....+...+... ..++|+++|+||+|+.+......+...+... .....+++|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGT--RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCccc--cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEEee
Confidence 346789999999999886321 112233333221 2358999999999997543333334444322 122257899
Q ss_pred ecCCCCHHHHHHHHHHhh
Q 030008 163 CKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l 180 (184)
|+++.|++++.+.+.+.+
T Consensus 77 a~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 77 INNPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999999999999997764
No 348
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.94 E-value=5.8e-08 Score=76.15 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=71.2
Q ss_pred EEEEEEecCCch-------------hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 030008 64 VTIKLWDLGGQP-------------RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNK 130 (184)
Q Consensus 64 ~~~~~~D~~G~~-------------~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK 130 (184)
-..+++|.||.- ..-.+...++.+.+++|+|+--...+ .-.....+++.+....+...|+|.||
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD---AERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD---AERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc---hhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 458899999932 23456778999999999999654433 23344455666666678899999999
Q ss_pred CCCCCC--CCHHHHHhHhCcCcccCcceeEEEeeecCC---CCHHHHHHH
Q 030008 131 IDKPGA--LSKQALTDEMGLKSITDREVCCFMISCKNS---TNIDSVIDW 175 (184)
Q Consensus 131 ~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~v~~l~~~ 175 (184)
+|+.+. ..+..+.+++.-..+.-....||.+-.=.| +.|+++.++
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrGnssdSIdaIR~Y 538 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKGNSSESIEAIREY 538 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCCCcchhHHHHHHH
Confidence 999764 346777777765555444445666543332 245554443
No 349
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.90 E-value=6e-09 Score=77.08 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=67.6
Q ss_pred cCCch-hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC
Q 030008 71 LGGQP-RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK 149 (184)
Q Consensus 71 ~~G~~-~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~ 149 (184)
.|||. .........+..+|++++|+|+..+.+... ..+...+ .++|+++|+||+|+.+......+.+.+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~- 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE- 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-
Confidence 46654 335567778899999999999987643222 2223333 25799999999999643222333223321
Q ss_pred cccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 150 SITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.+.+++.+||+++.|++++.+.+.+.+.+
T Consensus 76 ----~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 ----KGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred ----cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 12368999999999999999999887654
No 350
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.90 E-value=1.1e-08 Score=70.43 Aligned_cols=98 Identities=15% Similarity=0.146 Sum_probs=64.5
Q ss_pred cCCch-hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC
Q 030008 71 LGGQP-RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK 149 (184)
Q Consensus 71 ~~G~~-~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~ 149 (184)
.||+. +........++++|++++|+|+.++..... ..+.... .++|+++|+||+|+.+.....++.+.+...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~ 74 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFESK 74 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHhc
Confidence 45643 445667778899999999999987643221 1122221 247999999999996432222222222111
Q ss_pred cccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 150 SITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
...++.+||+++.|++++.+.+...+
T Consensus 75 -----~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 75 -----GEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred -----CCeEEEEECCCcccHHHHHHHHHHHH
Confidence 23578999999999999999998875
No 351
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.1e-09 Score=82.43 Aligned_cols=156 Identities=18% Similarity=0.188 Sum_probs=101.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc---------------------------------CCCCCCCCCccceeEEEEEeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT---------------------------------GGYSEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~---------------------------------~~~~~~~~~t~~~~~~~~~~~~ 63 (184)
+.+++++++|+..+||||+-.+++. +...+....|++.....+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 5679999999999999999887661 1112334456666666677778
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC---cHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCC--CC
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD---NLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPG--AL 137 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~--~~ 137 (184)
.++++.|+||+..+-.....-+.++|+.++|+++...+ .|+.- ...-...+ .........|+++||+|-.. +.
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~L-akt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAML-AKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHH-HHhhccceEEEEEEeccCCccCcc
Confidence 89999999999999777777778899999999997654 12111 00001111 11113467899999999753 21
Q ss_pred C--HHHHHhH----hCc-CcccCcceeEEEeeecCCCCHHHHH
Q 030008 138 S--KQALTDE----MGL-KSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 138 ~--~~~~~~~----~~~-~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
. .++.... +.. ...-.....++++|..+|.++++..
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 1 1122221 111 1112245679999999999988754
No 352
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=3.3e-08 Score=74.01 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=77.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCccceeEEEEEe---------------------------------
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVTK--------------------------------- 61 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~---~~~~t~~~~~~~~~~--------------------------------- 61 (184)
...-|+++|+=..||||+|+-++.+.++. .+.||.......+..
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 44679999999999999999999888764 234444422211100
Q ss_pred -----C---cEEEEEEecCCchhh-----------HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCC
Q 030008 62 -----G---NVTIKLWDLGGQPRF-----------RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGI 122 (184)
Q Consensus 62 -----~---~~~~~~~D~~G~~~~-----------~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (184)
. --.++++||||.-.- ....+=+...+|.|+++||+..-+--..+...+..+.. ..-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----Ccc
Confidence 0 024899999994322 33345567889999999999876543444444444433 345
Q ss_pred cEEEEeeCCCCCCC
Q 030008 123 PLLVLGNKIDKPGA 136 (184)
Q Consensus 123 ~~iiv~nK~D~~~~ 136 (184)
.+-+|.||+|.++.
T Consensus 213 kiRVVLNKADqVdt 226 (532)
T KOG1954|consen 213 KIRVVLNKADQVDT 226 (532)
T ss_pred eeEEEeccccccCH
Confidence 67788999999854
No 353
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.87 E-value=1.6e-08 Score=69.66 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=38.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~ 74 (184)
+..++++++|.+|+|||||+|++.+.... ..+..|..... +..+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~--~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQW--IKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEE--EEec-CCEEEEECCCC
Confidence 45579999999999999999999976542 12223333322 2222 45889999994
No 354
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.87 E-value=1.1e-08 Score=75.99 Aligned_cols=88 Identities=18% Similarity=0.163 Sum_probs=62.9
Q ss_pred HHHhccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEE
Q 030008 82 ERYCRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+..+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+..........+ ...+.++++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEA-----LALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHH-----HhCCCeEEE
Confidence 34578899999999999887 77777776665433 368999999999997542111111111 113457899
Q ss_pred eeecCCCCHHHHHHHHHH
Q 030008 161 ISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~ 178 (184)
+||+++.|+++++..|..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999887653
No 355
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.86 E-value=9.4e-09 Score=68.49 Aligned_cols=52 Identities=29% Similarity=0.339 Sum_probs=35.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCccceeEEEEEeCcEEEEEEecCCc
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~G~ 74 (184)
-+++++|.+|+|||||+|++.+..... ....|.... .+..+. .+.+|||||.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQ--TIFLTP-TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceE--EEEeCC-CEEEEECCCc
Confidence 389999999999999999999766531 122222222 233322 5899999994
No 356
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.85 E-value=1.6e-08 Score=74.74 Aligned_cols=83 Identities=22% Similarity=0.318 Sum_probs=64.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEEe-----------------CcEEEEEEecCC----
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVTK-----------------GNVTIKLWDLGG---- 73 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~~-----------------~~~~~~~~D~~G---- 73 (184)
.++++++++|.||+|||||+|++++..... .+++|+++....+.. -...++++|++|
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 367899999999999999999999766543 466788876655321 235699999998
Q ss_pred ---chhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 74 ---QPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 74 ---~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
.+...+..-+.++.+|+++.|+++..
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 33456667778899999999999864
No 357
>PRK12288 GTPase RsgA; Reviewed
Probab=98.84 E-value=2.4e-08 Score=75.90 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=63.9
Q ss_pred HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
...++|.+++|+++....++..+..|+.... ..++|.++|+||+|+.+............. ....+.+++++||
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA 190 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSS 190 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeC
Confidence 3567899999999987778888888776442 246899999999999754322222111111 1122357999999
Q ss_pred cCCCCHHHHHHHHHHh
Q 030008 164 KNSTNIDSVIDWLVKH 179 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~ 179 (184)
+++.|++++++.|...
T Consensus 191 ~tg~GideL~~~L~~k 206 (347)
T PRK12288 191 HTGEGLEELEAALTGR 206 (347)
T ss_pred CCCcCHHHHHHHHhhC
Confidence 9999999999988653
No 358
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.82 E-value=1.2e-08 Score=78.17 Aligned_cols=98 Identities=26% Similarity=0.358 Sum_probs=64.6
Q ss_pred chhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCccc
Q 030008 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSIT 152 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~ 152 (184)
.+.+......+.+.++++++|+|+.+... .....+.... ...|+++|+||+|+.+... .+......... .+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~-~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR-AK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH-HH
Confidence 56788888888889999999999976531 1222233332 2579999999999975432 22222211100 11
Q ss_pred Ccce---eEEEeeecCCCCHHHHHHHHHHh
Q 030008 153 DREV---CCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 153 ~~~~---~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
..++ .++++||++|.|++++++.|.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1111 48899999999999999999764
No 359
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.82 E-value=2.1e-08 Score=67.92 Aligned_cols=82 Identities=22% Similarity=0.223 Sum_probs=53.8
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHH-HHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 89 SAIVYVVDAADPDNLSISRSELH-DLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
|++++|+|+.++.+... .++. ..... .++|+++|+||+|+.+.....++...+... ....++++||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~----~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLRHS----YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHHhh----CCceEEEEeccCCc
Confidence 68999999988754332 2222 22222 468999999999996432222322222211 12358999999999
Q ss_pred CHHHHHHHHHHh
Q 030008 168 NIDSVIDWLVKH 179 (184)
Q Consensus 168 ~v~~l~~~i~~~ 179 (184)
|++++.+.+...
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988764
No 360
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.82 E-value=2.5e-08 Score=67.53 Aligned_cols=54 Identities=28% Similarity=0.321 Sum_probs=39.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G 73 (184)
....+++++|.+|+|||||+|++.+... ...+..|.......+. ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCC
Confidence 4568999999999999999999997542 2334455554443332 3589999999
No 361
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.80 E-value=1.7e-08 Score=77.32 Aligned_cols=124 Identities=13% Similarity=0.106 Sum_probs=68.7
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCC--------CCCCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGY--------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
+++++.++.. .+..++.++|.+|+|||||+|++++... +..+.+|.+.....+ +..+.++||||...
T Consensus 142 ~eL~~~l~~~--~~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 142 DELLDKIKKA--RNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIIN 216 (360)
T ss_pred HHHHHHHHHH--hCCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCC
Confidence 4555555443 2346999999999999999999996432 223334444332222 12367999999543
Q ss_pred hHHhHH--------HHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 77 FRSMWE--------RYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 77 ~~~~~~--------~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
...... ... +......++++....-.+..+.. +.........+.+.+++.+..+...
T Consensus 217 ~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~-----~d~~~~~~~~~~~~~~~~~~~h~t~ 283 (360)
T TIGR03597 217 SHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLAR-----FDYLKGEKTSFTFYVSNELNIHRTK 283 (360)
T ss_pred hhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEE-----EEEecCCceEEEEEccCCceeEeec
Confidence 322111 111 23455677777654322222210 1111123466778888888765433
No 362
>PRK00098 GTPase RsgA; Reviewed
Probab=98.80 E-value=1.9e-08 Score=75.18 Aligned_cols=85 Identities=22% Similarity=0.179 Sum_probs=58.3
Q ss_pred HhccCCEEEEEEeCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEe
Q 030008 84 YCRAVSAIVYVVDAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
.+.++|.+++|+|+.+++..... ..++..+. . .++|+++|+||+|+.+... ..+....+ ...+.+++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~-~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~-----~~~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAE-A---NGIKPIIVLNKIDLLDDLEEARELLALY-----RAIGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEEhHHcCCCHHHHHHHHHHH-----HHCCCeEEEE
Confidence 45889999999999887655444 44444432 2 4689999999999963211 11222222 1123578999
Q ss_pred eecCCCCHHHHHHHHH
Q 030008 162 SCKNSTNIDSVIDWLV 177 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~ 177 (184)
||+++.|++++++.+.
T Consensus 148 SA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 148 SAKEGEGLDELKPLLA 163 (298)
T ss_pred eCCCCccHHHHHhhcc
Confidence 9999999999998764
No 363
>PRK14974 cell division protein FtsY; Provisional
Probab=98.80 E-value=3.5e-08 Score=74.51 Aligned_cols=94 Identities=12% Similarity=0.108 Sum_probs=53.4
Q ss_pred cEEEEEEecCCchhhH----HhHHHH--hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFR----SMWERY--CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~----~~~~~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
+.++.++||+|..... ...... ..+.+.+++|+|+..++.... ....+... -..--+++||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~---~a~~f~~~----~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE---QAREFNEA----VGIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH---HHHHHHhc----CCCCEEEEeeecCCCC
Confidence 4679999999965322 112222 235688999999976542222 12222211 1234677999998643
Q ss_pred CCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 137 LSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 137 ~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
... -.+.... +.|+.+++ +|++++++.
T Consensus 295 ~G~~ls~~~~~--------~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 GGAALSIAYVI--------GKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ccHHHHHHHHH--------CcCEEEEe--CCCChhhcc
Confidence 322 2222222 33677776 799998874
No 364
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.79 E-value=1.9e-08 Score=74.87 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=67.8
Q ss_pred ecCCchh-hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc
Q 030008 70 DLGGQPR-FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL 148 (184)
Q Consensus 70 D~~G~~~-~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~ 148 (184)
-.|||.. ........+..+|++++|+|+..+.+... ..+..... ++|+++|+||+|+.+....+.+...+..
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~~ 78 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFEE 78 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHHH
Confidence 4577653 35567778899999999999987643222 22333332 5899999999999643222233222211
Q ss_pred CcccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 149 KSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 149 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.+.+++.+||.++.|++++.+.+...+.+
T Consensus 79 -----~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 79 -----QGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred -----cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 12468999999999999999998877653
No 365
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.79 E-value=4.6e-08 Score=66.23 Aligned_cols=55 Identities=25% Similarity=0.425 Sum_probs=37.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCcEEEEEEecCC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGG 73 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~G 73 (184)
...+++++|.+|+||||++|++.++.. ....++.+.... .+...+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 467899999999999999999986442 233444443322 1112234689999999
No 366
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.79 E-value=3.1e-08 Score=73.28 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=38.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~ 74 (184)
..++++++|.||+|||||+|++.+... ...+..|..... +... ..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQW--IKLS-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEE--EEeC-CCEEEEECCCc
Confidence 468999999999999999999996553 222333444332 2222 25899999996
No 367
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.79 E-value=3.6e-07 Score=65.61 Aligned_cols=84 Identities=20% Similarity=0.127 Sum_probs=55.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC--CCCC---CCCCccceeEEEEEe---CcEEEEEEecCCchhh------HHhHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG--GYSE---DMIPTVGFNMRKVTK---GNVTIKLWDLGGQPRF------RSMWE 82 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~--~~~~---~~~~t~~~~~~~~~~---~~~~~~~~D~~G~~~~------~~~~~ 82 (184)
.+-.-|+++|++++|||||+|++++. .+.. ...+|.+.-...... .+..+.++||||.... .....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34567889999999999999999987 5532 245566654443333 3578999999995322 11111
Q ss_pred HHhc--cCCEEEEEEeCCCc
Q 030008 83 RYCR--AVSAIVYVVDAADP 100 (184)
Q Consensus 83 ~~~~--~~~~ii~v~d~~~~ 100 (184)
..+. -+++++|..+....
T Consensus 85 ~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 85 FALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHhCEEEEeccCccc
Confidence 2222 37888888888654
No 368
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.78 E-value=5.1e-08 Score=72.52 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=38.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC-C--CCCCccceeEEEEEeCcEEEEEEecCCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS-E--DMIPTVGFNMRKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~-~--~~~~t~~~~~~~~~~~~~~~~~~D~~G~ 74 (184)
+..++++++|.||+|||||+|++.+.... . .+..|..... +.. +..+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW--IKL-GKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE--EEe-CCcEEEEECCCc
Confidence 35689999999999999999999975542 2 2233333322 222 235889999995
No 369
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.78 E-value=2.1e-08 Score=75.31 Aligned_cols=153 Identities=21% Similarity=0.226 Sum_probs=89.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCC------------------CCCCCcccee----------------------EEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYS------------------EDMIPTVGFN----------------------MRK 58 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~------------------~~~~~t~~~~----------------------~~~ 58 (184)
+.+|+++|+..+|||||+.-+.++... ....++++.. +.+
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 589999999999999999876633221 1111122211 111
Q ss_pred EEe-CcEEEEEEecCCchhhHHhHHHHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 59 VTK-GNVTIKLWDLGGQPRFRSMWERYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 59 ~~~-~~~~~~~~D~~G~~~~~~~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+.. ...-++|+|.+|+++|......-+ +-.|...+++-++-+- .....+-+.....-.+|+++|+||+|.-.
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-----iGmTKEHLgLALaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-----IGMTKEHLGLALALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-----eeccHHhhhhhhhhcCcEEEEEEeeccCc
Confidence 111 124588999999999977654443 3357888888877541 11111112222223689999999999854
Q ss_pred CCCHHH----HHhHhCcC---------------------cccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 136 ALSKQA----LTDEMGLK---------------------SITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 136 ~~~~~~----~~~~~~~~---------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
.+-.++ +.+.++.. +....-+|+|.+|..+|+|++-+...+
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 332222 11222221 111234789999999999988765443
No 370
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=8.7e-09 Score=81.23 Aligned_cols=114 Identities=21% Similarity=0.191 Sum_probs=78.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--------------------CCCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--------------------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
++.-+|.+.-+-.|||||+-.+++.-... +...-|+........+.+.++.++||||+-.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 34568899999999999999987721110 0111122223334566788999999999999
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+.....+.++-.|++++++|+..+- .......+....+ .++|.|..+||+|-..
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GV-qsQt~tV~rQ~~r----y~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGV-ESQTETVWRQMKR----YNVPRICFINKMDRMG 170 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccce-ehhhHHHHHHHHh----cCCCeEEEEehhhhcC
Confidence 9888999999999999999987652 1112222333322 4799999999999643
No 371
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.75 E-value=4.3e-08 Score=73.95 Aligned_cols=66 Identities=24% Similarity=0.302 Sum_probs=44.4
Q ss_pred HHHHHHhhc-ccceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCch
Q 030008 7 FLNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 7 ~~~~~~~~~-~~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (184)
..+++++.. .+...++.++|-||+||||+||+|.+... +..+..|.+.....++. .+.++||||.-
T Consensus 119 ~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii 188 (322)
T COG1161 119 KIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGII 188 (322)
T ss_pred HHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCcC
Confidence 334444332 24568999999999999999999997665 22334444444444433 38999999943
No 372
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.74 E-value=8.3e-08 Score=72.18 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=53.9
Q ss_pred CcEEEEEEecCCchhhHH----hHHH---Hh-----ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEee
Q 030008 62 GNVTIKLWDLGGQPRFRS----MWER---YC-----RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGN 129 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~----~~~~---~~-----~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 129 (184)
.++++.++||||...... .... .+ ..++..++|+|++.+. ..+.+ ...+... -.+.-+|+|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~~~~giIlT 267 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----VGLTGIILT 267 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----CCCCEEEEE
Confidence 457899999999643211 1111 11 2467789999998653 22222 2333221 134478899
Q ss_pred CCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 130 KIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 130 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|.|...... .-.+.... +.|+..++ +|++++++-
T Consensus 268 KlD~t~~~G~~l~~~~~~--------~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 268 KLDGTAKGGVVFAIADEL--------GIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCCCccHHHHHHHHH--------CCCEEEEe--CCCChhhCc
Confidence 999653322 22222222 33677777 888887763
No 373
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.72 E-value=2.1e-07 Score=68.63 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=54.8
Q ss_pred CcEEEEEEecCCchhhHHhHH-------HHhc-----cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEee
Q 030008 62 GNVTIKLWDLGGQPRFRSMWE-------RYCR-----AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGN 129 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~-------~~~~-----~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 129 (184)
.++++.++||||......... .... .++.+++|+|++... ..+. ....+.+.. .+.-+|+|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC----CCCEEEEE
Confidence 457899999999654322211 1222 378899999997542 2222 223333221 24578899
Q ss_pred CCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 130 KIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 130 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|.|...... .-.+.... +.|+.+++ +|++++++-
T Consensus 226 KlDe~~~~G~~l~~~~~~--------~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYEL--------KLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCccHHHHHHHHH--------CcCEEEEe--CCCChHhCc
Confidence 999864322 22333332 23677776 888887763
No 374
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.71 E-value=1.2e-06 Score=58.45 Aligned_cols=148 Identities=20% Similarity=0.291 Sum_probs=76.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCc--EEEEEEecC-C--------------------
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDLG-G-------------------- 73 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~-G-------------------- 73 (184)
+..++|++.|+||+||||++.++...-. .....--++....++.++ .-|.++|+. |
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~-~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR-EKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH-hcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 4578999999999999999988762111 111122223333333322 346666666 2
Q ss_pred -chhh----HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc
Q 030008 74 -QPRF----RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL 148 (184)
Q Consensus 74 -~~~~----~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~ 148 (184)
.+.+ .......++.+|++ ++|=-.+ ++.....+.+.+.......+|+|.++.+.+-. -+.+.+..
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvI--IIDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~------P~v~~ik~ 151 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVI--IIDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRH------PLVQRIKK 151 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCEE--EEecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCC------hHHHHhhh
Confidence 0111 12233445556764 4554333 22222223333333333478888888776531 12222221
Q ss_pred CcccCcceeEEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 149 KSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 149 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
. +..+++ .+.+|=+.++..|.+.|...
T Consensus 152 ~-----~~v~v~---lt~~NR~~i~~~Il~~L~~~ 178 (179)
T COG1618 152 L-----GGVYVF---LTPENRNRILNEILSVLKGE 178 (179)
T ss_pred c-----CCEEEE---EccchhhHHHHHHHHHhccC
Confidence 1 112333 56677779999988887653
No 375
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=9.1e-09 Score=78.11 Aligned_cols=115 Identities=23% Similarity=0.162 Sum_probs=84.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC--------CC------------CCCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG--------GY------------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~--------~~------------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
--+|+++.+..+||||.-.+++.- .. .+...-|+......++++++.+.++||||+..++
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 358999999999999999988721 11 0112223333444577889999999999999999
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
-..+++++-.|+++.|||++.+-.-+.+. +..+....++|-+..+||+|+.....
T Consensus 117 leverclrvldgavav~dasagve~qtlt-----vwrqadk~~ip~~~finkmdk~~anf 171 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLT-----VWRQADKFKIPAHCFINKMDKLAANF 171 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceee-----eehhccccCCchhhhhhhhhhhhhhh
Confidence 89999999999999999998763222222 23344556899999999999875433
No 376
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.67 E-value=4.5e-08 Score=66.02 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
-.++++|+.|+|||||+|+|...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999965
No 377
>PRK13796 GTPase YqeH; Provisional
Probab=98.66 E-value=9.5e-08 Score=73.34 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=42.7
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCC--------CCCCCCCccceeEEEEEeCcEEEEEEecCCch
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGG--------YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (184)
+.+++.+... .+..++.++|.+|+|||||||++.... .+..+.+|.+.....+.. ...++||||..
T Consensus 148 ~eL~~~I~~~--~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~---~~~l~DTPGi~ 221 (365)
T PRK13796 148 DELLEAIEKY--REGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD---GSFLYDTPGII 221 (365)
T ss_pred HHHHHHHHHh--cCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC---CcEEEECCCcc
Confidence 4555555444 244689999999999999999998542 122334455443333322 25799999963
No 378
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.65 E-value=8.7e-08 Score=63.83 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=49.7
Q ss_pred HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEE
Q 030008 81 WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
....+..+|++++|+|+.++.+... ..+..++.... .++|+++|+||+|+.+.....++.+.+.. .+.++++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~-----~~~~ii~ 76 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKK-----EGIVVVF 76 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHh-----cCCeEEE
Confidence 4556788999999999988754331 12222222211 46899999999999643322233333222 1246899
Q ss_pred eeecCCCC
Q 030008 161 ISCKNSTN 168 (184)
Q Consensus 161 ~Sa~~~~~ 168 (184)
+||.++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99998753
No 379
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.65 E-value=1.8e-07 Score=72.65 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=62.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc----CCCC-----CCCCC------------ccceeEEE-E----------------E
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT----GGYS-----EDMIP------------TVGFNMRK-V----------------T 60 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~----~~~~-----~~~~~------------t~~~~~~~-~----------------~ 60 (184)
...|+++|.+||||||++..+.. .+.. .+... ..+..+.. . .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45688999999999999998761 1111 01100 01111111 0 0
Q ss_pred eCcEEEEEEecCCchhhHHh----HHHH--hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 61 KGNVTIKLWDLGGQPRFRSM----WERY--CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~----~~~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
..++++.++||||....... .... ..+++-+++|+|+.-++.-......+.. . ..+--+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~---~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD---S----VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh---c----cCCcEEEEECccCC
Confidence 12578999999996544222 1121 2346789999999866433222222221 1 23557889999986
Q ss_pred CC
Q 030008 135 GA 136 (184)
Q Consensus 135 ~~ 136 (184)
..
T Consensus 253 ar 254 (429)
T TIGR01425 253 AK 254 (429)
T ss_pred CC
Confidence 43
No 380
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=4.2e-07 Score=71.80 Aligned_cols=141 Identities=11% Similarity=0.082 Sum_probs=82.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
++.+=|+++|+||+||||||+.+.+.-.........++. ..+......+++...|. -.+......+-+|.+++.+|
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPi-TvvsgK~RRiTflEcp~---Dl~~miDvaKIaDLVlLlId 142 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPI-TVVSGKTRRITFLECPS---DLHQMIDVAKIADLVLLLID 142 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCce-EEeecceeEEEEEeChH---HHHHHHhHHHhhheeEEEec
Confidence 456788899999999999999988433222211111211 22334557799999993 23334456677999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCc--ccCcceeEEEeeecC
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKS--ITDREVCCFMISCKN 165 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~Sa~~ 165 (184)
.+-+ |+.-.-.+..++..+. -..++-|+|..|+..... .....+.++-.. ...+++.+|-+|...
T Consensus 143 gnfG--fEMETmEFLnil~~HG--mPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 143 GNFG--FEMETMEFLNILISHG--MPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred cccC--ceehHHHHHHHHhhcC--CCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 9876 2222222333333321 234677889999975432 333333332211 124455677666443
No 381
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=9.9e-08 Score=68.96 Aligned_cols=132 Identities=13% Similarity=0.212 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhcccc--eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC----ccceeEEE--EEeC--cEEEEEEecCC
Q 030008 4 WEAFLNWLRSLFFKQ--EMELSLIGLQNAGKTSLVNVVATGGYSEDMIP----TVGFNMRK--VTKG--NVTIKLWDLGG 73 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~----t~~~~~~~--~~~~--~~~~~~~D~~G 73 (184)
|..+.++|-+....+ .++|+.+|..|.||||||.++++..+...+.+ ++...... +... ..+++++||.|
T Consensus 25 FdsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 25 FDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred cccChHHHHHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 345566655554444 58999999999999999999999888766543 33322222 2222 26789999998
Q ss_pred c-------hhh-------HHhHHHH-------------h--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcE
Q 030008 74 Q-------PRF-------RSMWERY-------------C--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPL 124 (184)
Q Consensus 74 ~-------~~~-------~~~~~~~-------------~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (184)
. +.+ ..+...| + ...++++|.|.++.. ++..+.-....-+ ..++.+
T Consensus 105 fGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~L----dskVNI 179 (406)
T KOG3859|consen 105 FGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKL----DSKVNI 179 (406)
T ss_pred cccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHH----hhhhhh
Confidence 1 111 1111111 2 234778888888754 3444332222212 235788
Q ss_pred EEEeeCCCCCCCCCHH
Q 030008 125 LVLGNKIDKPGALSKQ 140 (184)
Q Consensus 125 iiv~nK~D~~~~~~~~ 140 (184)
|-|+-|+|.++..+..
T Consensus 180 IPvIAKaDtisK~eL~ 195 (406)
T KOG3859|consen 180 IPVIAKADTISKEELK 195 (406)
T ss_pred HHHHHHhhhhhHHHHH
Confidence 8899999988654443
No 382
>PRK12288 GTPase RsgA; Reviewed
Probab=98.62 E-value=1.5e-07 Score=71.52 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=33.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCC-CC---------CCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYS-ED---------MIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~-~~---------~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
.++++|.+|+|||||+|+|...... .. .-+|.......+..+ ..++||||...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 3789999999999999999954321 11 112323333333222 359999995544
No 383
>PRK13796 GTPase YqeH; Provisional
Probab=98.54 E-value=4.6e-07 Score=69.63 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=58.4
Q ss_pred hhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccC
Q 030008 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITD 153 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~ 153 (184)
+.+...........+.+++|+|+.+.. ......+..+. .+.|+++|+||+|+.+... .++....... ..+.
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~-~~k~ 128 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQ-EAKE 128 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHH-HHHh
Confidence 344444444433334899999998753 12223333332 2579999999999975322 2222211110 0111
Q ss_pred cc---eeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 154 RE---VCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 154 ~~---~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
.+ ..++.+||+++.|++++++.|.+..
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 11 2488999999999999999997764
No 384
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.53 E-value=6.7e-07 Score=60.73 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
+++.|..|||||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999998854
No 385
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.50 E-value=3e-07 Score=61.73 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=36.5
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 132 (184)
.++++.++||+|..... ..++..+|.++++....-.+...-.. .......-++++||.|
T Consensus 90 ~~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k---------~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK---------AGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh---------hhHhhhcCEEEEeCCC
Confidence 35789999999854322 34777889998888776332111111 1112344588899987
No 386
>PRK12289 GTPase RsgA; Reviewed
Probab=98.49 E-value=4.2e-07 Score=69.21 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++++|++|+|||||+|+|...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 3799999999999999999954
No 387
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.47 E-value=7.6e-07 Score=64.75 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=34.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCC------CC----CCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGY------SE----DMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~------~~----~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
.++++|++|+|||||+|++..... +. ...+|.......+ .+ ..++||||...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccc
Confidence 678999999999999999995422 11 1123444443334 22 37999999543
No 388
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.44 E-value=2.1e-06 Score=75.04 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=64.4
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCC----CCccce-eEEEEE-eCcEEEEEEecCCc----h----hhHHhHHHHh-
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDM----IPTVGF-NMRKVT-KGNVTIKLWDLGGQ----P----RFRSMWERYC- 85 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~----~~t~~~-~~~~~~-~~~~~~~~~D~~G~----~----~~~~~~~~~~- 85 (184)
=.+|+|++||||||++++- +..++-.. ..+.+. ....++ .-..+-+++||+|. + .....|..++
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~ 191 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLG 191 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHH
Confidence 3589999999999999876 22332110 011110 001111 11124679999992 1 1223344432
Q ss_pred --------ccCCEEEEEEeCCCcC--cH-------HHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 86 --------RAVSAIVYVVDAADPD--NL-------SISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 86 --------~~~~~ii~v~d~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+-.+++|+++|+.+-- +. ..+...+.++... .....|+.+|+||+|+..
T Consensus 192 ~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 192 LLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 3369999999997531 11 1233444444332 335799999999999874
No 389
>PRK01889 GTPase RsgA; Reviewed
Probab=98.38 E-value=3.2e-06 Score=64.80 Aligned_cols=84 Identities=18% Similarity=0.169 Sum_probs=56.0
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeec
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+.++|.+++|+++..+-+...+..++..... .+++.++|+||+|+.+. .++..+.+... ..+.+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEEEECC
Confidence 5788999999999744343344444443322 36777999999999754 22222222211 234578999999
Q ss_pred CCCCHHHHHHHHH
Q 030008 165 NSTNIDSVIDWLV 177 (184)
Q Consensus 165 ~~~~v~~l~~~i~ 177 (184)
++.|+++|...+.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999988874
No 390
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.37 E-value=5.1e-07 Score=63.41 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=36.8
Q ss_pred CcEEEEEEecCCchhhHH----hHHHHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFRS----MWERYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~----~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
++.++.++||||...... .+..+. ...+-+++|+|++....-......+.+.+ + +-=++.||.|...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~------~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF------G-IDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS------S-TCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc------c-CceEEEEeecCCC
Confidence 346799999999544321 122221 24678999999986542221111122221 1 2246699999864
Q ss_pred C
Q 030008 136 A 136 (184)
Q Consensus 136 ~ 136 (184)
.
T Consensus 155 ~ 155 (196)
T PF00448_consen 155 R 155 (196)
T ss_dssp T
T ss_pred C
Confidence 3
No 391
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.35 E-value=1.5e-06 Score=59.87 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=38.9
Q ss_pred cEEEEEEecCCchhhH----HhHHHHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFR----SMWERYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~----~~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
+.++.++|+||..... .....+. ...+.+++|+|+..... .......+.... + ..-+|.||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 4568999999964321 1122221 24799999999965432 223333333222 2 35677799998643
No 392
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.32 E-value=2.6e-06 Score=63.44 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
-.++++|++|+|||||+|.+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 578999999999999999998643
No 393
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.31 E-value=2.2e-06 Score=63.21 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=33.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC------CC----CCCCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGG------YS----EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~------~~----~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
..+++|+.|+|||||+|++.... .+ ...-+|.......+..+ =.++||||...+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCcc
Confidence 67899999999999999998421 11 11222333333333222 368999995554
No 394
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.30 E-value=1.1e-06 Score=68.40 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=40.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G 73 (184)
.++|++||-||+||||+||+|.+++. +..+..|..+....++- .+-++|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCC
Confidence 58999999999999999999998764 34555565555555543 478999999
No 395
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.28 E-value=2.3e-05 Score=59.03 Aligned_cols=93 Identities=17% Similarity=0.048 Sum_probs=54.2
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhc--------cCCEEEEEEeCCCcCcHHH-HHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCR--------AVSAIVYVVDAADPDNLSI-SRSELHDLLNKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~--------~~~~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiv~nK~D 132 (184)
+..+..++.+.|.-.-......+.. ..|.++-|+|+.+-..... ..+.+..-+.. .-++|+||+|
T Consensus 83 ~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~D 156 (323)
T COG0523 83 DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTD 156 (323)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEeccc
Confidence 3467888899885544444333322 2377999999986532222 33333333332 3388999999
Q ss_pred CCCCCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 133 KPGALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+.+....+.+...... .++.++++.+|.
T Consensus 157 lv~~~~l~~l~~~l~~---lnp~A~i~~~~~ 184 (323)
T COG0523 157 LVDAEELEALEARLRK---LNPRARIIETSY 184 (323)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCeEEEccc
Confidence 9866543333333332 345567887776
No 396
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.27 E-value=5.8e-07 Score=62.26 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=39.4
Q ss_pred cEEEEEEecCCchhhHHh------HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSM------WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~------~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
..+..++.+.|....... ... .-..+.++.|+|+.+-.........+.+.+... -++|+||+|+.+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~-~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A------DvIvlnK~D~~~~ 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKE-DFRLDSIITVVDATNFDELENIPELLREQIAFA------DVIVLNKIDLVSD 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHH-HESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHH
T ss_pred CcCEEEECCccccccchhhhccccccc-cccccceeEEeccccccccccchhhhhhcchhc------CEEEEeccccCCh
Confidence 457888999984333322 111 233588999999966432333334444444443 3888999999755
Q ss_pred C
Q 030008 137 L 137 (184)
Q Consensus 137 ~ 137 (184)
.
T Consensus 157 ~ 157 (178)
T PF02492_consen 157 E 157 (178)
T ss_dssp H
T ss_pred h
Confidence 4
No 397
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.27 E-value=1.1e-05 Score=60.91 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=38.3
Q ss_pred EEEEEEecCCchhhHHhHHHHhc--------cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCR--------AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~--------~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
.+..++++.|.-........+.. ..+.++.|+|+.+......-......-+. -.-++|+||+|+.+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~------~AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG------YADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH------hCCEEEEeccccCC
Confidence 56788899996655554444321 23779999999754211111111111121 23388899999985
Q ss_pred C
Q 030008 136 A 136 (184)
Q Consensus 136 ~ 136 (184)
.
T Consensus 165 ~ 165 (318)
T PRK11537 165 E 165 (318)
T ss_pred H
Confidence 3
No 398
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.26 E-value=7.4e-06 Score=64.16 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=37.7
Q ss_pred EEEEEEecCCchhhHHh----HHH--HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSM----WER--YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~----~~~--~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
.++.++||||....... ... ....++.+++|+|+.... ........+.... ...-+|.||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l----~i~gvIlTKlD~~a 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV----GIGGIIITKLDGTA 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC----CCCEEEEecccCCC
Confidence 47999999996544221 111 134578899999997653 2222233332111 12356789999754
No 399
>PRK10867 signal recognition particle protein; Provisional
Probab=98.26 E-value=5.1e-06 Score=64.95 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=37.0
Q ss_pred CcEEEEEEecCCchhhH----HhHHHH--hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFR----SMWERY--CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~----~~~~~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
.++++.++||||..... ...... .-..+-+++|+|+..++ ........+.... + ..-+|.||.|...
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~-i~giIlTKlD~~~ 254 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---G-LTGVILTKLDGDA 254 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---C-CCEEEEeCccCcc
Confidence 34679999999954321 111111 12467789999987543 2223333332211 1 2356679999643
No 400
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.24 E-value=5.2e-06 Score=64.85 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=37.5
Q ss_pred CcEEEEEEecCCchhhHH----hHHHH--hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFRS----MWERY--CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~----~~~~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
.++++.++||||...... ....+ .-+.+.+++|+|+..++ ........+.... + ..=+|.||.|..
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~-i~giIlTKlD~~ 252 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---G-LTGVVLTKLDGD 252 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---C-CCEEEEeCccCc
Confidence 346799999999543321 11111 23468889999997553 2333333332221 1 235668999964
No 401
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=1.3e-05 Score=61.45 Aligned_cols=118 Identities=15% Similarity=0.154 Sum_probs=62.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC------CCCCCC--c---------------cceeEEEE-----------EeCc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY------SEDMIP--T---------------VGFNMRKV-----------TKGN 63 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~------~~~~~~--t---------------~~~~~~~~-----------~~~~ 63 (184)
+.-.++++|++|+||||++.+|...-. .....+ + .+...... ...+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 355788999999999999998873210 000000 0 01111111 1235
Q ss_pred EEEEEEecCCchhhHHh----HHHH--hccCCEEEEEEeCCCc-CcHHHHHHHHHHHhcCCCCCCC-cEEEEeeCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSM----WERY--CRAVSAIVYVVDAADP-DNLSISRSELHDLLNKPSLSGI-PLLVLGNKIDKPG 135 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~----~~~~--~~~~~~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~iiv~nK~D~~~ 135 (184)
.++.++||+|....... .... .....-.++|++++.. +........+..........-. .-=+|+||.|...
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 68999999996543222 2221 1223456899999764 3333343444433222111101 2346679999864
No 402
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.23 E-value=6.9e-06 Score=57.31 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=40.5
Q ss_pred EEEEEEecCCchhh------HHhHHHHhcc--C-CEEEEEEeCCCc-CcH---HHHHHHHHHHhcCCCCCCCcEEEEeeC
Q 030008 64 VTIKLWDLGGQPRF------RSMWERYCRA--V-SAIVYVVDAADP-DNL---SISRSELHDLLNKPSLSGIPLLVLGNK 130 (184)
Q Consensus 64 ~~~~~~D~~G~~~~------~~~~~~~~~~--~-~~ii~v~d~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~iiv~nK 130 (184)
-.+.++|.|||-+. ...+..++++ . -++++++|..-. ++. +....-+..... -.+|.|=|++|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhH
Confidence 46899999997543 2223333333 2 346777777532 111 111122222222 25899999999
Q ss_pred CCCCCCCCHHH
Q 030008 131 IDKPGALSKQA 141 (184)
Q Consensus 131 ~D~~~~~~~~~ 141 (184)
+|+......++
T Consensus 174 MDLlk~~~k~~ 184 (273)
T KOG1534|consen 174 MDLLKDKNKKE 184 (273)
T ss_pred HHHhhhhhHHH
Confidence 99986644333
No 403
>PRK00098 GTPase RsgA; Reviewed
Probab=98.23 E-value=3.4e-06 Score=63.16 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
...++++|++|+|||||+|++.+..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999998543
No 404
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.20 E-value=8.6e-06 Score=62.56 Aligned_cols=111 Identities=17% Similarity=0.122 Sum_probs=59.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc----CCCC-----CCCCC------------ccceeEEE----------E---E-eCc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT----GGYS-----EDMIP------------TVGFNMRK----------V---T-KGN 63 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~----~~~~-----~~~~~------------t~~~~~~~----------~---~-~~~ 63 (184)
...|+++|++||||||++..|.. ++.. .+... ..+..... + . ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 35889999999999999998862 1110 00000 01111110 0 1 114
Q ss_pred EEEEEEecCCchhhH----HhHHHHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFR----SMWERYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~----~~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
.++.++||+|..... ..+...+ ...+.+++|+|++-.. ......+..+-. -..-=+++||.|....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~-----~~idglI~TKLDET~k 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-----IHIDGIVFTKFDETAS 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC-----CCCCEEEEEcccCCCC
Confidence 689999999954321 1122222 2356788999986432 222233333311 1233567899998653
No 405
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.17 E-value=3e-05 Score=59.47 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=61.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EE---------------------------------EEeCcE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RK---------------------------------VTKGNV 64 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~---------------------------------~~~~~~ 64 (184)
.-.|+++|+.|+||||-+-.|...-........+++.. .. ....+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 66788999999999999887653222111122222111 00 012456
Q ss_pred EEEEEecCCchhhHH----hHHHHhccC--CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 65 TIKLWDLGGQPRFRS----MWERYCRAV--SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 65 ~~~~~D~~G~~~~~~----~~~~~~~~~--~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
++.++||.|...++. ....++..+ .-+.+|++++.. ...+...+..+. ..+.. =+++||.|...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~----~~~i~-~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFS----LFPID-GLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhc----cCCcc-eeEEEcccccC
Confidence 899999999655433 333443332 446788888754 223333333331 12222 35589999753
No 406
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=3.5e-05 Score=61.38 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=60.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC------CCCC-----CCCC------------ccceeEEEE-----------EeC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG------GYSE-----DMIP------------TVGFNMRKV-----------TKG 62 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~------~~~~-----~~~~------------t~~~~~~~~-----------~~~ 62 (184)
++.-.++++|+.|+||||++..|... .... .... ..+...... ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34568899999999999999887631 0100 0000 011111111 123
Q ss_pred cEEEEEEecCCchhhHHh----HHHHh-ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSM----WERYC-RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~----~~~~~-~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
.+++.++||+|....... ..... ......++|++.... ...+...+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 578999999995433211 11110 112345777887643 3333333333321 145678999999854
No 407
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=1.7e-05 Score=65.70 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
--++++|+.|+||||.+..+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 467899999999999999887
No 408
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.11 E-value=3.4e-05 Score=61.07 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
.--++++|+.|+||||++..|.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 3468899999999999999887
No 409
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=0.00044 Score=53.61 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=60.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC--------CCCC-----CC------------CCccceeEEEE-----------EeC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG--------GYSE-----DM------------IPTVGFNMRKV-----------TKG 62 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~--------~~~~-----~~------------~~t~~~~~~~~-----------~~~ 62 (184)
...|+++|+.|+||||.+..+... +... +. ..-.+...... ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 357889999999999999877621 1100 00 00011111110 124
Q ss_pred cEEEEEEecCCchhhH----HhHHHHhcc--CC-EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFR----SMWERYCRA--VS-AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~----~~~~~~~~~--~~-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+.++.++||+|..... ......+.. .+ -.++|+|++.. ...+...+..+.. --+-=+++||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence 5789999999954322 122223322 23 57899999876 2333333333311 123356789999864
Q ss_pred C
Q 030008 136 A 136 (184)
Q Consensus 136 ~ 136 (184)
.
T Consensus 327 ~ 327 (388)
T PRK12723 327 C 327 (388)
T ss_pred c
Confidence 3
No 410
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.07 E-value=0.00018 Score=55.53 Aligned_cols=24 Identities=13% Similarity=0.394 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.-.+-|+++|+..+||||||.+|.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFM 38 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFM 38 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHH
Confidence 456899999999999999999998
No 411
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=2.5e-05 Score=60.56 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC-----CC-----CCCC------------CccceeEEE----------EEeCcEEEE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG-----YS-----EDMI------------PTVGFNMRK----------VTKGNVTIK 67 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~-----~~-----~~~~------------~t~~~~~~~----------~~~~~~~~~ 67 (184)
..++++|++||||||++.+|.... .. .+.. ...+..... +...+.++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999886311 00 0000 000111111 112356899
Q ss_pred EEecCCchhh-HHh---HHHHhc-----cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 68 LWDLGGQPRF-RSM---WERYCR-----AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 68 ~~D~~G~~~~-~~~---~~~~~~-----~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
++||||.... ... +..++. ...-.++|+|++... .........+ .. --+-=+|+||.|....
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLDEt~~ 374 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLDEADF 374 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEcccCCCC
Confidence 9999996422 222 222222 134578999998653 2222222222 11 1233567899998643
No 412
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.00 E-value=5.4e-06 Score=62.87 Aligned_cols=57 Identities=28% Similarity=0.444 Sum_probs=41.1
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCC-CCCCCccceeEEEEEeCcEEEEEEecCC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYS-EDMIPTVGFNMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~G 73 (184)
++..++++|+|-||+||||+||+|...... ....|++......+. -+..+.+.|.||
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~-Ldk~i~llDsPg 306 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK-LDKKIRLLDSPG 306 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee-ccCCceeccCCc
Confidence 467899999999999999999999976663 333343332222232 234699999999
No 413
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.00 E-value=1.4e-05 Score=61.46 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=40.8
Q ss_pred CcEEEEEEecCCchhhHHhHHH------HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFRSMWER------YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~------~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
..+++.++||+|........-. ..-++|=+++|+|+.-++.-.+....+.+-+.. . =+|+||.|-.
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i------t-GvIlTKlDGd 252 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI------T-GVILTKLDGD 252 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC------c-eEEEEcccCC
Confidence 3468999999996554332221 234568899999998876555555444443321 1 2456777754
No 414
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=5.4e-05 Score=59.02 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.-.++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999997763
No 415
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.98 E-value=2.2e-05 Score=57.89 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=36.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCC--------CCCCccceeE-EEEEeCcEEEEEEecCCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSE--------DMIPTVGFNM-RKVTKGNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~--------~~~~t~~~~~-~~~~~~~~~~~~~D~~G~ 74 (184)
+.++++.|+|-||+|||||||++.+....- .+.-|..... ..+ .....+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri-~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRI-SHRPPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEe-ccCCceEEecCCCc
Confidence 578999999999999999999877433211 1122222211 112 22345889999993
No 416
>PRK13695 putative NTPase; Provisional
Probab=97.94 E-value=0.00037 Score=48.00 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
++|+++|.+|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999865
No 417
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.92 E-value=3e-05 Score=55.10 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=37.6
Q ss_pred EEEEEEecC-CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 64 VTIKLWDLG-GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 64 ~~~~~~D~~-G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
.++.++||- |.+.+.. ...+++|.++.|+|.+.. ++.. ...+..+..... -+++.+|.||+|..
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~-sl~t-aeri~~L~~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYK-SLRT-AERIKELAEELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHH-HHHH-HHHHHHHHHHhC--CceEEEEEeeccch
Confidence 345555552 3333322 234678999999999854 2222 233333333221 38999999999965
No 418
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.90 E-value=0.0002 Score=56.27 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=38.0
Q ss_pred CcEEEEEEecCCchhhH----HhHHHHhc---cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFR----SMWERYCR---AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~----~~~~~~~~---~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
...++.++||||..... ..+..++. ...-+++|++++.. ...+...+..+ .. .. +--++.||.|..
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f-~~---~~-~~~vI~TKlDet 370 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHF-SR---LP-LDGLIFTKLDET 370 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHh-CC---CC-CCEEEEeccccc
Confidence 34689999999964432 22333333 23466788888654 22333333333 11 11 225789999985
Q ss_pred CC
Q 030008 135 GA 136 (184)
Q Consensus 135 ~~ 136 (184)
..
T Consensus 371 ~~ 372 (424)
T PRK05703 371 SS 372 (424)
T ss_pred cc
Confidence 43
No 419
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.90 E-value=0.00024 Score=54.26 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
.++.|.-|||||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578899999999999999843
No 420
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.86 E-value=0.00025 Score=43.43 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=44.8
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHh-HHHHhccCCEEEEEEeCCCc
Q 030008 22 LSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM-WERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~~~ii~v~d~~~~ 100 (184)
+++.|.+|+||||+...+...-.. .+.....++ ++.++|+++....... .......++.++++++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK------RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 578899999999998877632111 111112222 7999999985543321 13455678999999988754
No 421
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.83 E-value=8.7e-05 Score=54.67 Aligned_cols=111 Identities=17% Similarity=0.135 Sum_probs=60.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC----CCC-----CC------------CCCccceeEEE-------------E-EeCc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG----GYS-----ED------------MIPTVGFNMRK-------------V-TKGN 63 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~----~~~-----~~------------~~~t~~~~~~~-------------~-~~~~ 63 (184)
.-+++++|++|+||||++..+... ... .. +....++.... + ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 368999999999999998876521 110 00 00011111111 0 1124
Q ss_pred EEEEEEecCCchhhH----HhHHHHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFR----SMWERYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~----~~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
.++.++||||..... ..+...+ .+.+-+++|+|++... ......+..+.. -.+-=+++||.|....
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 689999999965321 1122222 2356789999987431 122333333311 1334667899998653
No 422
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.83 E-value=1.5e-05 Score=60.63 Aligned_cols=90 Identities=21% Similarity=0.222 Sum_probs=53.7
Q ss_pred HHHHHHHhhc-ccceeEEEEEcCCCCChHHHHHHHHcCCCCCC---CCCccceeEEEEEeCcEEEEEEecCCchh--hHH
Q 030008 6 AFLNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVVATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPR--FRS 79 (184)
Q Consensus 6 ~~~~~~~~~~-~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~--~~~ 79 (184)
++++++.++- -++++.|+++|-||+||||+||+|-..+...- +..|.--.+..+ ...+-++|.||.-- ...
T Consensus 293 ~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvVyps~ds 369 (572)
T KOG2423|consen 293 QLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVVYPSSDS 369 (572)
T ss_pred HHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCccCCCCCc
Confidence 4555555554 46889999999999999999999986665321 111111111111 23588999999321 122
Q ss_pred hHHHHhccCCEEEEEEeCCCcC
Q 030008 80 MWERYCRAVSAIVYVVDAADPD 101 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~ 101 (184)
.....+ .+++-|-.+.+++
T Consensus 370 et~ivL---kGvVRVenv~~pe 388 (572)
T KOG2423|consen 370 ETDIVL---KGVVRVENVKNPE 388 (572)
T ss_pred hHHHHh---hceeeeeecCCHH
Confidence 233332 3455666666553
No 423
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.79 E-value=6.4e-05 Score=56.18 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=74.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc----CCCCC----------------------CCCC----ccc-----eeEEEE---
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT----GGYSE----------------------DMIP----TVG-----FNMRKV--- 59 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~----~~~~~----------------------~~~~----t~~-----~~~~~~--- 59 (184)
+.+-++++|-.|+||||-|-.+.. ++.+. ...+ ..+ ..+.-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 468899999999999999987761 11100 0000 001 111111
Q ss_pred EeCcEEEEEEecCCchhhHH-------hHHHHhccCCE-----EEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEE
Q 030008 60 TKGNVTIKLWDLGGQPRFRS-------MWERYCRAVSA-----IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVL 127 (184)
Q Consensus 60 ~~~~~~~~~~D~~G~~~~~~-------~~~~~~~~~~~-----ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv 127 (184)
...++++.++||+|.-.... -+.+.++..+. +++++|++-++.--.-...+.+... +. =++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~------l~-GiI 290 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG------LD-GII 290 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC------Cc-eEE
Confidence 13567899999999433321 12333333333 8889999877533333344444432 22 456
Q ss_pred eeCCCCCCCC-CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 128 GNKIDKPGAL-SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 128 ~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+||.|-.... ..-.+...+.. |+.++. -|+++++|.
T Consensus 291 lTKlDgtAKGG~il~I~~~l~~--------PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 291 LTKLDGTAKGGIILSIAYELGI--------PIKFIG--VGEGYDDLR 327 (340)
T ss_pred EEecccCCCcceeeeHHHHhCC--------CEEEEe--CCCChhhcc
Confidence 8999954321 22333333332 566654 466676663
No 424
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=3.1e-05 Score=58.79 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=32.0
Q ss_pred EeCcEEEEEEecCCchhh-HHhHHH-----HhccCCEEEEEEeCCCcCcHHHHHHHH
Q 030008 60 TKGNVTIKLWDLGGQPRF-RSMWER-----YCRAVSAIVYVVDAADPDNLSISRSEL 110 (184)
Q Consensus 60 ~~~~~~~~~~D~~G~~~~-~~~~~~-----~~~~~~~ii~v~d~~~~~~~~~~~~~~ 110 (184)
..++.++.++||.|...- .++... -.-+.|-+++|.|++-++.-......+
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 346788999999994432 222221 123469999999999776444433333
No 425
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=6.1e-05 Score=57.75 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=19.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.-.++++|+.||||||++..+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34567899999999999999876
No 426
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.77 E-value=0.00071 Score=44.46 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
..-.+++.|++|+|||++++.+.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999854
No 427
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.76 E-value=2.6e-05 Score=50.93 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
--+++.|++|+|||++++++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999843
No 428
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=9.8e-05 Score=63.90 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=62.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCC----CCCccceeEEEEE-eCcEEEEEEecCCc--------hhhHHhHHHH---
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSED----MIPTVGFNMRKVT-KGNVTIKLWDLGGQ--------PRFRSMWERY--- 84 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~----~~~t~~~~~~~~~-~~~~~~~~~D~~G~--------~~~~~~~~~~--- 84 (184)
=-+|+|++|+||||++..-- ..++-. .....+......+ .-.-+-+++||.|. +.....|..+
T Consensus 127 Wy~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred ceEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 34799999999999886432 211100 0000011112221 12235689999982 1223334433
Q ss_pred ------hccCCEEEEEEeCCCcC---c------HHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 85 ------CRAVSAIVYVVDAADPD---N------LSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 85 ------~~~~~~ii~v~d~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
.+-.++||+.+|+.+-- . ...+...+.++.. ......|+++++||.|+.+
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~-tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE-TLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHH-hhccCCceEEEEecccccc
Confidence 24459999999997431 1 1113333444432 3335689999999999985
No 429
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.75 E-value=0.00029 Score=51.94 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 2 GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
|+.+.....++.......=-|++.|++||||||++++++..
T Consensus 63 g~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 63 GLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhh
Confidence 34444455554444334445899999999999999998743
No 430
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.73 E-value=3.5e-05 Score=53.03 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=33.2
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHh
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEM 146 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~ 146 (184)
|++++|+|+.++.+-.. ..+..... ....++|+++|+||+|+.+.....++.+.+
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence 78999999988632211 22222211 111358999999999997654444444444
No 431
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.71 E-value=3.8e-05 Score=49.53 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|+|.|++||||||+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999984
No 432
>PRK04195 replication factor C large subunit; Provisional
Probab=97.70 E-value=0.00068 Score=54.30 Aligned_cols=39 Identities=33% Similarity=0.475 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcc-cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 4 WEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.+.+..|+.++.. ...-.+++.|++|+||||+++.+.+.
T Consensus 23 ~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 23 KEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3566677766642 22557899999999999999999854
No 433
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.69 E-value=0.00011 Score=50.52 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-+.++|..|||||||+.++..
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHH
Confidence 4678999999999999999983
No 434
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.69 E-value=0.0002 Score=53.02 Aligned_cols=86 Identities=23% Similarity=0.278 Sum_probs=56.4
Q ss_pred hccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH--HHhHhCcCcccCcceeEEEe
Q 030008 85 CRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA--LTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 161 (184)
+.+.|-+++++.+.+|+ +...+..++... .. .++.-++|+||+|+.+...... ....+ ...+.+.+.+
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a-e~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y-----~~~gy~v~~~ 147 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLA-EA---GGIEPVIVLNKIDLLDDEEAAVKELLREY-----EDIGYPVLFV 147 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHH-HH---cCCcEEEEEEccccCcchHHHHHHHHHHH-----HhCCeeEEEe
Confidence 34467788888888876 333333333332 22 4676677899999986655442 22222 2345578999
Q ss_pred eecCCCCHHHHHHHHHHh
Q 030008 162 SCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~ 179 (184)
|+++++|++++.+.+...
T Consensus 148 s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 148 SAKNGDGLEELAELLAGK 165 (301)
T ss_pred cCcCcccHHHHHHHhcCC
Confidence 999999999998887543
No 435
>PRK08118 topology modulation protein; Reviewed
Probab=97.66 E-value=4.3e-05 Score=52.36 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
+|+|+|++|||||||..++..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998884
No 436
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=6.6e-05 Score=58.96 Aligned_cols=119 Identities=20% Similarity=0.218 Sum_probs=73.1
Q ss_pred HHHhhcc--cceeEEEEEcCCCCChHHHHHHHHcCCC------------CC------CCCCccceeEEE-----------
Q 030008 10 WLRSLFF--KQEMELSLIGLQNAGKTSLVNVVATGGY------------SE------DMIPTVGFNMRK----------- 58 (184)
Q Consensus 10 ~~~~~~~--~~~~~v~i~G~~~sGKStli~~l~~~~~------------~~------~~~~t~~~~~~~----------- 58 (184)
.++.++. ++--+..++.+..-|||||-..+..... .+ ...-|+......
T Consensus 8 ~vr~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~ 87 (842)
T KOG0469|consen 8 QVRELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLK 87 (842)
T ss_pred HHHHHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHH
Confidence 3444443 2335788999999999999998873210 00 000111111111
Q ss_pred -----EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 030008 59 -----VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 59 -----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 133 (184)
-+..+.-+.++|.||+-.+.+.....++-.|++++|+|+-++--.+. ...+...+.. .-+| ++++||.|.
T Consensus 88 ~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~E---RIkP-vlv~NK~DR 162 (842)
T KOG0469|consen 88 FIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIAE---RIKP-VLVMNKMDR 162 (842)
T ss_pred HhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHHh---hccc-eEEeehhhH
Confidence 01234678999999999999999999999999999999987632211 1122222222 2345 567999995
No 437
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.64 E-value=0.00062 Score=49.10 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+..++++.|+.|+||||++.++++
T Consensus 51 pannvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHH
Confidence 678999999999999999999984
No 438
>PRK07261 topology modulation protein; Provisional
Probab=97.63 E-value=4.9e-05 Score=52.29 Aligned_cols=21 Identities=24% Similarity=0.613 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
+|+|+|++|||||||..++..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999873
No 439
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.00039 Score=54.37 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=72.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH----cCCCC----------CC---------------CCCccceeEEE---------
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA----TGGYS----------ED---------------MIPTVGFNMRK--------- 58 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~----~~~~~----------~~---------------~~~t~~~~~~~--------- 58 (184)
+..+.|+++|-.|+||||=+-.+. .++++ .. ....++....-
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~va 455 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVA 455 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHH
Confidence 477999999999999999888765 12211 00 01111110000
Q ss_pred ------EEeCcEEEEEEecCCchhhHH----hHHHH--hccCCEEEEEEeCCC-cCcHHHHHHHHHHHhcCCCCCCCcEE
Q 030008 59 ------VTKGNVTIKLWDLGGQPRFRS----MWERY--CRAVSAIVYVVDAAD-PDNLSISRSELHDLLNKPSLSGIPLL 125 (184)
Q Consensus 59 ------~~~~~~~~~~~D~~G~~~~~~----~~~~~--~~~~~~ii~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i 125 (184)
-+.++.++.++||+|...... .+..+ ....|.+++|-.+-- .+++..+...=..+... ..+..---
T Consensus 456 k~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~-~~~r~id~ 534 (587)
T KOG0781|consen 456 KEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADH-STPRLIDG 534 (587)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcC-CCccccce
Confidence 124568899999999543322 22222 356799999987753 34555554433444333 22233335
Q ss_pred EEeeCCCCCCCCCHHHHHhH
Q 030008 126 VLGNKIDKPGALSKQALTDE 145 (184)
Q Consensus 126 iv~nK~D~~~~~~~~~~~~~ 145 (184)
++++|+|.++...-..+...
T Consensus 535 ~~ltk~dtv~d~vg~~~~m~ 554 (587)
T KOG0781|consen 535 ILLTKFDTVDDKVGAAVSMV 554 (587)
T ss_pred EEEEeccchhhHHHHHhhhe
Confidence 67899998755433333333
No 440
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.63 E-value=6.3e-05 Score=42.34 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
..++.|+.||||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999876
No 441
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.62 E-value=0.00021 Score=52.18 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=17.7
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 030008 22 LSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~ 40 (184)
|+++|.|||||||+.+.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La 20 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELA 20 (249)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999886
No 442
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.61 E-value=0.0017 Score=43.05 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=57.7
Q ss_pred EEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCc
Q 030008 24 LIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDN 102 (184)
Q Consensus 24 i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~ 102 (184)
.-|.+|+||||+--.+...-.. ...++.-.... ....-.+++.++|+|+.. .......+..+|.++++.+.+.. +
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~~-s 80 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAK-LGKRVLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEPT-S 80 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCChh-H
Confidence 4567899999996655421100 00000000000 000011679999999743 33345678889999999988743 3
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 030008 103 LSISRSELHDLLNKPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 133 (184)
+......+..+.... ...++.+|+|+++.
T Consensus 81 ~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 81 ITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 443333333332211 34577899999974
No 443
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.61 E-value=5.4e-05 Score=50.24 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=18.0
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 030008 22 LSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~ 40 (184)
|+++|+|||||||++.++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999987
No 444
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.61 E-value=8.9e-05 Score=40.76 Aligned_cols=45 Identities=22% Similarity=0.411 Sum_probs=25.1
Q ss_pred ccCCEEEEEEeCCCcCc--HHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 030008 86 RAVSAIVYVVDAADPDN--LSISRSELHDLLNKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 132 (184)
+-.++++|++|++..+. .+.-...+.++... ..++|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 44689999999987653 33333334444222 23799999999998
No 445
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.60 E-value=5.8e-05 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.+|+++|+|||||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999854
No 446
>PF05729 NACHT: NACHT domain
Probab=97.58 E-value=0.00057 Score=46.25 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 030008 22 LSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~ 41 (184)
++|.|++|+||||++..+..
T Consensus 3 l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 68999999999999998884
No 447
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.57 E-value=0.00088 Score=49.79 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=59.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhh----------------------
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF---------------------- 77 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---------------------- 77 (184)
..++++|++|.|||+++++|....... ..+. .....+..+.+|.....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~ 131 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED---------AERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVA 131 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCC-CCCC---------CccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHH
Confidence 679999999999999999999544321 1110 11235677777752211
Q ss_pred --HHhHHHHhccCCEEEEEEeCCCc---CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 030008 78 --RSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 78 --~~~~~~~~~~~~~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 131 (184)
.......++...+=+++||=-+. -+...-...+..+..-.+.-.+|++.|||+-
T Consensus 132 ~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 132 KLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 22234566777888888886421 1122222222222222444679999998764
No 448
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.56 E-value=8.5e-05 Score=43.02 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
|++.|++||||||+.+++...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998743
No 449
>PRK01889 GTPase RsgA; Reviewed
Probab=97.55 E-value=0.00025 Score=54.49 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.-+++++|.+|+|||||+|.+.+.
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHh
Confidence 3458899999999999999999853
No 450
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.54 E-value=0.00011 Score=52.22 Aligned_cols=72 Identities=19% Similarity=0.050 Sum_probs=36.6
Q ss_pred cEEEEEEecCCchhh------HHhHHHHhccCCEE---EEEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCC
Q 030008 63 NVTIKLWDLGGQPRF------RSMWERYCRAVSAI---VYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~------~~~~~~~~~~~~~i---i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D 132 (184)
..++.++|.|||-++ ...+-+.+.+.+.= +-.+|+.-........ ..+..+.. -..-..|-+=|+.|+|
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~t-Ml~melphVNvlSK~D 174 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLAT-MLHMELPHVNVLSKAD 174 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHH-HHhhcccchhhhhHhH
Confidence 357899999997543 22233344445553 4445543222222221 11111111 1113477888899999
Q ss_pred CCC
Q 030008 133 KPG 135 (184)
Q Consensus 133 ~~~ 135 (184)
+..
T Consensus 175 l~~ 177 (290)
T KOG1533|consen 175 LLK 177 (290)
T ss_pred HHH
Confidence 864
No 451
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.54 E-value=0.00023 Score=53.89 Aligned_cols=97 Identities=20% Similarity=0.210 Sum_probs=67.6
Q ss_pred EEEecCCch-hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhH
Q 030008 67 KLWDLGGQP-RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDE 145 (184)
Q Consensus 67 ~~~D~~G~~-~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~ 145 (184)
.+-+.||+. .+.......+..+|+++.|+|+.++.+-.. ..+..+.. ..|.++|+||+|+.+.....++.+.
T Consensus 13 ~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~--~~l~~~v~-----~k~~i~vlNK~DL~~~~~~~~W~~~ 85 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN--PELERIVK-----EKPKLLVLNKADLAPKEVTKKWKKY 85 (322)
T ss_pred cccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC--ccHHHHHc-----cCCcEEEEehhhcCCHHHHHHHHHH
Confidence 344557754 556778888899999999999999864322 22334433 3555999999999977666666666
Q ss_pred hCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 146 MGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 146 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+.... +...+.+++..+.+...+..
T Consensus 86 ~~~~~----~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 86 FKKEE----GIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HHhcC----CCccEEEEeecccCccchHH
Confidence 65542 33567888888887776664
No 452
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.53 E-value=9.5e-05 Score=50.20 Aligned_cols=51 Identities=18% Similarity=0.467 Sum_probs=31.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
.+.++|.+|||||||+.++... ....+.....+......+.+ |.+|...++
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~------l~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~ 53 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPA------LSARGLRVAVIKHDHHDFDI-DTPGKDSYR 53 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH------HHHcCCcEEEEEecCCcccc-cCccchHHH
Confidence 5789999999999999999842 12222333444444433433 777744443
No 453
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.53 E-value=0.001 Score=42.00 Aligned_cols=102 Identities=15% Similarity=0.068 Sum_probs=53.7
Q ss_pred EEE-cCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC
Q 030008 23 SLI-GLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD 101 (184)
Q Consensus 23 ~i~-G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 101 (184)
+++ +..|+||||+...+...-......++.-.... . ....++.++|+|+.... .....+..+|.++++.+....
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-~-~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~- 77 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLD-L-QFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLP- 77 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-C-CCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChH-
Confidence 344 44689999987665421111000011000000 0 01127999999985433 344566788999999987654
Q ss_pred cHHHHHHHHHHHhcCCCCC-CCcEEEEeeC
Q 030008 102 NLSISRSELHDLLNKPSLS-GIPLLVLGNK 130 (184)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~-~~~~iiv~nK 130 (184)
+..........+... ... ...+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 344444444433222 222 3467777775
No 454
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.51 E-value=0.0012 Score=41.32 Aligned_cols=78 Identities=12% Similarity=0.022 Sum_probs=45.6
Q ss_pred EEEEc-CCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEe-CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 22 LSLIG-LQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 22 v~i~G-~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
|++.| ..|+||||+...+...-.. . +.....++. ..+++.++|+|+..... ....+..+|.++++.+...
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~-----~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-R-----GKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSP 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-C-----CCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCH
Confidence 56666 5599999997765521110 0 111111111 11679999999865333 3366677999999998864
Q ss_pred cCcHHHHHH
Q 030008 100 PDNLSISRS 108 (184)
Q Consensus 100 ~~~~~~~~~ 108 (184)
. +......
T Consensus 74 ~-s~~~~~~ 81 (104)
T cd02042 74 L-DLDGLEK 81 (104)
T ss_pred H-HHHHHHH
Confidence 3 3444433
No 455
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.51 E-value=6e-05 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=17.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999854
No 456
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.49 E-value=0.0008 Score=44.15 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++.+.+.+. ++..-.|++.|+.|+|||||++.+...
T Consensus 9 ~~l~~~l~~~-l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 9 DKFGKAFAKP-LDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHh-CCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555433 255567999999999999999999864
No 457
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.48 E-value=0.00025 Score=51.13 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhc--ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 4 WEAFLNWLRSLF--FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~--~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+..+.+.+..+. ..+..-|++.|++|||||||++.+.+
T Consensus 16 ~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 16 HKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344444444443 24578899999999999999998874
No 458
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.48 E-value=0.00012 Score=51.95 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=23.6
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.+...|+|.|++|||||||.+.+..
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999999874
No 459
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.47 E-value=0.0013 Score=52.95 Aligned_cols=39 Identities=33% Similarity=0.461 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhhcccce-e-EEEEEcCCCCChHHHHHHHHc
Q 030008 3 LWEAFLNWLRSLFFKQE-M-ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-~-~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.+..|++....... - =+++.||+||||||.++.+..
T Consensus 27 Kv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~ 67 (519)
T PF03215_consen 27 KVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAK 67 (519)
T ss_pred HHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 35678889987654332 3 356799999999999998884
No 460
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.47 E-value=0.00024 Score=52.48 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+..-.|++.|++||||||+++++..
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCccccchHHHHHhh
Confidence 5678999999999999999999984
No 461
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00011 Score=52.81 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.=-|+++|++|||||||+|.+.+
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 33479999999999999998884
No 462
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.45 E-value=0.0016 Score=44.18 Aligned_cols=19 Identities=37% Similarity=0.795 Sum_probs=17.6
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 030008 22 LSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~ 40 (184)
+.++|..|||||||+.++.
T Consensus 5 l~ivG~k~SGKTTLie~lv 23 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLV 23 (161)
T ss_pred EEEEecCCCChhhHHHHHH
Confidence 5799999999999999986
No 463
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.45 E-value=0.00014 Score=50.30 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=20.5
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHH
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+++...+........-.+++.|++|+|||+|++++.
T Consensus 10 ~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 10 ERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp HHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 344444432223445678999999999999999877
No 464
>PRK06696 uridine kinase; Validated
Probab=97.44 E-value=0.00029 Score=50.57 Aligned_cols=37 Identities=16% Similarity=0.381 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHH
Q 030008 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+.+.+++-+......+-|+|.|.+|||||||.+++.
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~ 43 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFADELA 43 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 4556666654445678999999999999999999887
No 465
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.44 E-value=0.00013 Score=50.06 Aligned_cols=129 Identities=19% Similarity=0.271 Sum_probs=59.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCc--EEEEEEec-CCc---------------hhhH---H
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDL-GGQ---------------PRFR---S 79 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~-~G~---------------~~~~---~ 79 (184)
+|++.|++|+||||+++++...-. ....+.-|+....+..++ .-|.+.|. .|. .+|. .
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~-~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e 79 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK-KKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLE 79 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH-HTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh-ccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHH
Confidence 689999999999999999873211 112233333333333222 33555565 220 0110 1
Q ss_pred --------hHHHHhccCCEEEEEEeCCC-cCc-HHHHHHHHHHHhcCCCCCCCcEEEEeeCC-CCCCCCCHHHHHhHhCc
Q 030008 80 --------MWERYCRAVSAIVYVVDAAD-PDN-LSISRSELHDLLNKPSLSGIPLLVLGNKI-DKPGALSKQALTDEMGL 148 (184)
Q Consensus 80 --------~~~~~~~~~~~ii~v~d~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~iiv~nK~-D~~~~~~~~~~~~~~~~ 148 (184)
.....+..++ ++++|=-. .|. -..+.+.+..++. ..+|++.++-+. +. ...+++.....
T Consensus 80 ~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~~~~F~~~v~~~l~----s~~~vi~vv~~~~~~---~~l~~i~~~~~- 149 (168)
T PF03266_consen 80 SFEEIGLPALRNALSSSD--LIVIDEIGKMELKSPGFREAVEKLLD----SNKPVIGVVHKRSDN---PFLEEIKRRPD- 149 (168)
T ss_dssp HHHCCCCCCCHHHHHCCH--EEEE---STTCCC-CHHHHHHHHHHC----TTSEEEEE--SS--S---CCHHHHHTTTT-
T ss_pred HHHHHHHHHHHhhcCCCC--EEEEeccchhhhcCHHHHHHHHHHHc----CCCcEEEEEecCCCc---HHHHHHHhCCC-
Confidence 1122224455 57777532 221 2234455555655 468899888777 32 23444444433
Q ss_pred CcccCcceeEEEeeecCCC
Q 030008 149 KSITDREVCCFMISCKNST 167 (184)
Q Consensus 149 ~~~~~~~~~~~~~Sa~~~~ 167 (184)
..++.++..+.+
T Consensus 150 -------~~i~~vt~~NRd 161 (168)
T PF03266_consen 150 -------VKIFEVTEENRD 161 (168)
T ss_dssp -------SEEEE--TTTCC
T ss_pred -------cEEEEeChhHHh
Confidence 246666544443
No 466
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.43 E-value=0.00016 Score=50.46 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=26.5
Q ss_pred HHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...+.++.. .+..-.++++|++||||||+++.+++
T Consensus 13 ~~~~~l~~~-v~~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 13 LQAAYLWLA-VEARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHHHHHHH-HhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 344444433 35567899999999999999999984
No 467
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.42 E-value=0.00011 Score=48.33 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=22.1
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.=.++|+|+.|||||||++.+.+
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEEccCCCccccceeeecc
Confidence 34556789999999999999999873
No 468
>PLN02674 adenylate kinase
Probab=97.42 E-value=0.00024 Score=51.53 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=29.1
Q ss_pred chHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHH
Q 030008 2 GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+++-.+++.++... +...+|+++|+|||||+|+..++.
T Consensus 15 ~~~~~~~~~~~~~~-~~~~~i~l~G~PGsGKgT~a~~La 52 (244)
T PLN02674 15 DLMTELLRRMKCSS-KPDKRLILIGPPGSGKGTQSPIIK 52 (244)
T ss_pred HHHHHHHHHHhhcc-ccCceEEEECCCCCCHHHHHHHHH
Confidence 45556666664333 446889999999999999999887
No 469
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.42 E-value=0.00012 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=20.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.=-|+++|+.|||||||+|-+-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 344467999999999999999886
No 470
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.42 E-value=0.0016 Score=49.80 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=24.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.+...+|++.|+.|||||||++++++.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcc
Confidence 457789999999999999999999854
No 471
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.39 E-value=0.0013 Score=50.10 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.7
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.....+|++.|.+|||||||+++++..
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhh
Confidence 356789999999999999999999843
No 472
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.36 E-value=0.00018 Score=46.83 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
|++.|++|+|||++++.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999844
No 473
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.36 E-value=0.0002 Score=51.66 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=23.6
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+..++++|+|.+|||||+|+..++.
T Consensus 9 l~~~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHH
Confidence 456779999999999999999988874
No 474
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.35 E-value=0.00022 Score=50.56 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=22.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++..-|+++|++|||||||.+.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999874
No 475
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.34 E-value=0.00021 Score=46.64 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY 44 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~ 44 (184)
-.++++|++|+||||++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999985443
No 476
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.34 E-value=0.00033 Score=53.44 Aligned_cols=38 Identities=32% Similarity=0.479 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcc--c-ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 4 WEAFLNWLRSLFF--K-QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~--~-~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+++..|++.... . +..=++++|+||+|||||.+++.+
T Consensus 60 i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~ 100 (361)
T smart00763 60 IERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKR 100 (361)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3566677766553 2 234468999999999999999873
No 477
>PRK06217 hypothetical protein; Validated
Probab=97.33 E-value=0.00019 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+|+|+|.+||||||+..+|..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999884
No 478
>PHA00729 NTP-binding motif containing protein
Probab=97.32 E-value=0.00041 Score=49.59 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.+.+.+... .-.+|++.|+||+|||||..++...
T Consensus 6 k~~~~~l~~~---~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 6 KKIVSAYNNN---GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHHhcC---CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 5555554332 3358999999999999999988753
No 479
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.30 E-value=0.00023 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.1
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.++.-.++++|+.|||||||++.+.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4566789999999999999999886
No 480
>PRK03839 putative kinase; Provisional
Probab=97.29 E-value=0.00024 Score=49.25 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
+|+++|.|||||||+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
No 481
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00035 Score=49.28 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+.=.++++|++|||||||++.+..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4555789999999999999998873
No 482
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.29 E-value=0.00023 Score=46.12 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998744
No 483
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=0.00021 Score=50.81 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++. .++++|+.|||||||++.+.+
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhC
Confidence 3457 899999999999999999984
No 484
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.28 E-value=0.001 Score=50.30 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=25.2
Q ss_pred HHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 9 NWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 9 ~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++|+... ....+|++.|.+|||||||+++++..
T Consensus 135 ~~L~~~v-~~~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 135 SVIRSAI-DSRLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred HHHHHHH-HcCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3444333 35568999999999999999999853
No 485
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.28 E-value=0.00024 Score=46.99 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
|+++|++|||||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999853
No 486
>PRK14530 adenylate kinase; Provisional
Probab=97.28 E-value=0.00025 Score=50.63 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
.+|+++|+|||||||+.+.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999886
No 487
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.27 E-value=0.00024 Score=49.14 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++++|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998753
No 488
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.27 E-value=0.00029 Score=49.83 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=22.9
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+++.--|+++|++|||||||++.+.+.
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 355667999999999999999999854
No 489
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.27 E-value=0.00026 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+..-.++++|++|||||||++.+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 344568999999999999999875
No 490
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.26 E-value=0.011 Score=40.60 Aligned_cols=65 Identities=11% Similarity=-0.111 Sum_probs=41.6
Q ss_pred EEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 65 TIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 65 ~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
++.++|+|+.... .....+..+|.++++++.... ++......+..+... ......+|+|+.|...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc---CCceEEEEEeCCcccc
Confidence 7999999985433 234556789999999988754 344444333333221 2245678999998754
No 491
>PRK10646 ADP-binding protein; Provisional
Probab=97.26 E-value=0.0077 Score=40.50 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=27.0
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++.+.+.+.. +..--|++-|+-|+|||||.+.+...
T Consensus 15 ~~l~~~la~~l-~~g~vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 15 LDLGARVAKAC-DGATVIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred HHHHHHHHHhC-CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34555554433 44556899999999999999999853
No 492
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.25 E-value=0.00032 Score=46.58 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|.|+|+.|||||||+..+.+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998873
No 493
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.25 E-value=0.00025 Score=51.64 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 444568999999999999999984
No 494
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.25 E-value=0.00027 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++++|++||||||+++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999743
No 495
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.24 E-value=0.00026 Score=49.20 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
..|+++|++||||||+.+.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 367899999999999999887
No 496
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.24 E-value=0.00027 Score=49.76 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 030008 22 LSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~ 41 (184)
|++.|++|||||||.+.+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999874
No 497
>PRK08233 hypothetical protein; Provisional
Probab=97.23 E-value=0.00035 Score=48.28 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..-|++.|.+|||||||.+++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36688999999999999999974
No 498
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.23 E-value=0.0044 Score=49.71 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=28.3
Q ss_pred chHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 2 GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
|+-...++.++.....+.=-|++.|+.||||||++++++..
T Consensus 225 g~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~ 265 (486)
T TIGR02533 225 GMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSR 265 (486)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhc
Confidence 44445555555444333335899999999999999988743
No 499
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.23 E-value=0.00028 Score=53.58 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
-+|+++|.+|+|||||++.+..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~ 184 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAA 184 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999984
No 500
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.22 E-value=0.0012 Score=47.44 Aligned_cols=67 Identities=16% Similarity=0.094 Sum_probs=38.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccc------eeEEEEEeCcEEEEEEecCCchhhHHhHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG------FNMRKVTKGNVTIKLWDLGGQPRFRSMWER 83 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~------~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 83 (184)
.+.=.++++|+.|||||||.+.+.+-.-+....-+.. -.........+.+.+-|-.+.-.-+.....
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~ 103 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGR 103 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHH
Confidence 4566789999999999999999984222211000000 000012355678888888774444333333
Done!