Query 030008
Match_columns 184
No_of_seqs 137 out of 1141
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 11:08:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ksh_A ARF-like protein 2; sma 100.0 2E-35 6.7E-40 205.0 19.4 178 1-183 3-181 (186)
2 1zj6_A ADP-ribosylation factor 100.0 6.2E-35 2.1E-39 202.8 18.9 177 1-182 1-178 (187)
3 2x77_A ADP-ribosylation factor 100.0 1.1E-35 3.8E-40 206.8 15.0 181 1-183 3-185 (189)
4 1zd9_A ADP-ribosylation factor 100.0 2E-34 7E-39 200.4 20.9 169 15-183 18-186 (188)
5 1fzq_A ADP-ribosylation factor 100.0 9.6E-35 3.3E-39 201.0 18.0 173 10-183 5-179 (181)
6 1r8s_A ADP-ribosylation factor 100.0 2.6E-34 8.7E-39 195.4 19.6 164 20-184 1-164 (164)
7 2b6h_A ADP-ribosylation factor 100.0 1E-34 3.6E-39 202.6 17.5 173 10-183 20-192 (192)
8 1upt_A ARL1, ADP-ribosylation 100.0 5.3E-34 1.8E-38 194.9 20.3 167 16-183 4-170 (171)
9 1moz_A ARL1, ADP-ribosylation 100.0 8.3E-35 2.8E-39 201.2 16.2 179 1-183 1-181 (183)
10 1m2o_B GTP-binding protein SAR 100.0 6E-34 2.1E-38 198.4 18.6 176 2-180 8-190 (190)
11 4bas_A ADP-ribosylation factor 100.0 5.4E-34 1.8E-38 199.6 16.0 167 17-183 15-190 (199)
12 4dkx_A RAS-related protein RAB 100.0 5.4E-35 1.8E-39 207.2 9.9 159 18-182 12-176 (216)
13 1f6b_A SAR1; gtpases, N-termin 100.0 2.6E-33 8.7E-38 196.5 16.9 164 16-180 22-197 (198)
14 2h17_A ADP-ribosylation factor 100.0 1.7E-33 5.9E-38 194.5 15.8 162 17-179 19-180 (181)
15 2h57_A ADP-ribosylation factor 100.0 4.3E-33 1.5E-37 193.9 17.4 167 17-183 19-188 (190)
16 3o47_A ADP-ribosylation factor 100.0 3E-32 1E-36 204.4 16.4 166 17-183 163-328 (329)
17 1ek0_A Protein (GTP-binding pr 100.0 1.8E-32 6.1E-37 187.0 10.8 165 18-183 2-170 (170)
18 3ihw_A Centg3; RAS, centaurin, 100.0 2.5E-31 8.5E-36 184.3 15.0 159 16-183 17-181 (184)
19 3lvq_E ARF-GAP with SH3 domain 100.0 8.7E-31 3E-35 206.6 19.0 166 17-183 320-485 (497)
20 3q72_A GTP-binding protein RAD 100.0 1.7E-31 5.7E-36 181.8 11.9 161 19-184 2-166 (166)
21 3kkq_A RAS-related protein M-R 100.0 1.1E-31 3.7E-36 185.6 11.1 162 17-183 16-183 (183)
22 1u8z_A RAS-related protein RAL 100.0 1.2E-31 4.1E-36 182.4 11.2 161 18-183 3-168 (168)
23 1c1y_A RAS-related protein RAP 100.0 1.1E-31 3.7E-36 182.7 10.8 160 18-181 2-166 (167)
24 3bc1_A RAS-related protein RAB 100.0 2.9E-31 9.8E-36 184.8 13.1 162 16-182 8-185 (195)
25 4dsu_A GTPase KRAS, isoform 2B 100.0 6.8E-31 2.3E-35 182.2 14.3 162 17-182 2-166 (189)
26 1kao_A RAP2A; GTP-binding prot 100.0 1.2E-31 4.1E-36 182.2 9.9 160 18-182 2-166 (167)
27 1r2q_A RAS-related protein RAB 100.0 4.7E-31 1.6E-35 179.9 12.5 160 17-182 4-169 (170)
28 3oes_A GTPase rhebl1; small GT 100.0 6.7E-32 2.3E-36 189.5 8.4 163 16-183 21-188 (201)
29 1x3s_A RAS-related protein RAB 100.0 1.9E-30 6.5E-35 180.9 15.7 162 17-183 13-179 (195)
30 2hup_A RAS-related protein RAB 100.0 6.2E-31 2.1E-35 184.7 12.8 161 17-183 27-194 (201)
31 3t5g_A GTP-binding protein RHE 100.0 1.3E-31 4.4E-36 184.9 9.1 162 17-183 4-170 (181)
32 2fn4_A P23, RAS-related protei 100.0 4.1E-31 1.4E-35 182.0 11.2 162 16-182 6-172 (181)
33 2fg5_A RAB-22B, RAS-related pr 100.0 1.1E-30 3.7E-35 182.1 13.2 161 17-183 21-187 (192)
34 1wms_A RAB-9, RAB9, RAS-relate 100.0 5.2E-30 1.8E-34 176.1 16.3 163 17-183 5-175 (177)
35 1z06_A RAS-related protein RAB 100.0 9.9E-31 3.4E-35 181.8 12.4 161 17-182 18-188 (189)
36 2bov_A RAla, RAS-related prote 100.0 1E-30 3.6E-35 183.7 12.6 162 16-182 11-177 (206)
37 3reg_A RHO-like small GTPase; 100.0 5.1E-31 1.7E-35 184.0 10.8 160 17-183 21-189 (194)
38 1z0j_A RAB-22, RAS-related pro 100.0 8.3E-31 2.8E-35 178.8 11.6 160 17-182 4-169 (170)
39 3q85_A GTP-binding protein REM 100.0 4.7E-31 1.6E-35 180.0 10.1 161 19-184 2-169 (169)
40 2erx_A GTP-binding protein DI- 100.0 4.6E-31 1.6E-35 180.3 10.1 162 18-183 2-168 (172)
41 2f7s_A C25KG, RAS-related prot 100.0 7E-31 2.4E-35 186.3 11.3 161 17-182 23-199 (217)
42 3tkl_A RAS-related protein RAB 100.0 2E-30 6.7E-35 181.0 13.3 161 17-183 14-180 (196)
43 2p5s_A RAS and EF-hand domain 100.0 2.1E-31 7.3E-36 186.7 8.4 167 12-183 21-198 (199)
44 2efe_B Small GTP-binding prote 100.0 1.3E-30 4.3E-35 179.8 12.1 161 17-183 10-176 (181)
45 2a9k_A RAS-related protein RAL 100.0 6E-31 2.1E-35 182.1 10.5 161 17-182 16-181 (187)
46 1z0f_A RAB14, member RAS oncog 100.0 1.3E-30 4.3E-35 179.3 12.0 160 17-182 13-178 (179)
47 2ce2_X GTPase HRAS; signaling 100.0 5.3E-30 1.8E-34 173.8 15.0 162 18-183 2-166 (166)
48 1z2a_A RAS-related protein RAB 100.0 3.4E-31 1.2E-35 180.4 9.0 160 17-183 3-168 (168)
49 2ew1_A RAS-related protein RAB 100.0 1E-30 3.6E-35 183.6 11.7 160 17-182 24-189 (201)
50 1g16_A RAS-related protein SEC 100.0 2.4E-30 8.1E-35 176.5 13.0 161 18-183 2-166 (170)
51 2g6b_A RAS-related protein RAB 100.0 6.5E-31 2.2E-35 181.0 10.1 162 16-183 7-175 (180)
52 2atv_A RERG, RAS-like estrogen 100.0 5.1E-31 1.8E-35 184.3 9.7 162 16-183 25-192 (196)
53 2bme_A RAB4A, RAS-related prot 100.0 1.9E-30 6.4E-35 179.7 12.4 160 17-182 8-173 (186)
54 2oil_A CATX-8, RAS-related pro 100.0 2.1E-30 7.3E-35 180.6 12.5 160 17-182 23-188 (193)
55 3dz8_A RAS-related protein RAB 100.0 3.1E-31 1E-35 184.7 8.2 161 17-183 21-187 (191)
56 2hxs_A RAB-26, RAS-related pro 100.0 3E-31 1E-35 182.5 7.9 162 17-183 4-174 (178)
57 1zbd_A Rabphilin-3A; G protein 100.0 2.8E-30 9.5E-35 181.4 12.8 161 16-182 5-171 (203)
58 2nzj_A GTP-binding protein REM 100.0 1.8E-30 6E-35 178.0 11.3 160 17-182 2-169 (175)
59 2y8e_A RAB-protein 6, GH09086P 100.0 1.6E-30 5.4E-35 178.8 11.0 160 18-183 13-178 (179)
60 3tw8_B RAS-related protein RAB 100.0 9.4E-31 3.2E-35 180.2 9.8 159 17-182 7-171 (181)
61 3clv_A RAB5 protein, putative; 100.0 1.5E-29 5.2E-34 177.4 16.1 158 17-182 5-204 (208)
62 2il1_A RAB12; G-protein, GDP, 100.0 1.2E-29 4.2E-34 176.8 15.4 162 17-183 24-191 (192)
63 2gf9_A RAS-related protein RAB 100.0 7.8E-31 2.7E-35 182.3 9.0 161 16-182 19-185 (189)
64 3cbq_A GTP-binding protein REM 100.0 5.8E-30 2E-34 179.0 13.1 162 17-183 21-189 (195)
65 2a5j_A RAS-related protein RAB 100.0 2.1E-30 7.3E-35 180.5 10.8 160 17-182 19-184 (191)
66 1z08_A RAS-related protein RAB 100.0 6E-31 2E-35 179.6 7.8 160 17-182 4-169 (170)
67 2iwr_A Centaurin gamma 1; ANK 100.0 4.4E-30 1.5E-34 176.7 12.2 156 17-182 5-169 (178)
68 2fu5_C RAS-related protein RAB 100.0 2.7E-31 9.3E-36 183.6 6.0 160 17-182 6-171 (183)
69 2gf0_A GTP-binding protein DI- 100.0 1.1E-29 3.6E-34 177.7 14.1 163 17-183 6-172 (199)
70 3c5c_A RAS-like protein 12; GD 100.0 5.6E-31 1.9E-35 182.9 7.2 160 17-182 19-186 (187)
71 3con_A GTPase NRAS; structural 100.0 1.5E-29 5.2E-34 175.8 14.2 161 18-183 20-184 (190)
72 3q3j_B RHO-related GTP-binding 100.0 6E-30 2E-34 181.4 12.4 160 17-183 25-204 (214)
73 2o52_A RAS-related protein RAB 100.0 1.8E-30 6.2E-35 182.1 9.2 160 17-182 23-188 (200)
74 3cph_A RAS-related protein SEC 100.0 2.1E-29 7E-34 178.0 14.6 162 16-182 17-182 (213)
75 1ky3_A GTP-binding protein YPT 100.0 8.6E-30 3E-34 175.5 12.4 162 17-182 6-178 (182)
76 4gzl_A RAS-related C3 botulinu 100.0 6.3E-30 2.1E-34 180.0 11.3 172 7-180 17-203 (204)
77 2bcg_Y Protein YP2, GTP-bindin 100.0 5.5E-30 1.9E-34 180.3 11.0 160 17-182 6-171 (206)
78 1vg8_A RAS-related protein RAB 100.0 1.1E-29 3.6E-34 178.8 12.5 163 17-182 6-175 (207)
79 3t1o_A Gliding protein MGLA; G 100.0 2.2E-29 7.5E-34 175.7 13.9 158 17-182 12-192 (198)
80 4djt_A GTP-binding nuclear pro 100.0 2.6E-30 8.8E-35 183.5 9.2 162 17-183 9-176 (218)
81 2yc2_C IFT27, small RAB-relate 100.0 7.9E-30 2.7E-34 179.4 10.5 161 17-182 18-192 (208)
82 2fh5_B SR-beta, signal recogni 100.0 1.1E-28 3.9E-33 174.5 16.2 163 17-180 5-214 (214)
83 2atx_A Small GTP binding prote 100.0 6.7E-30 2.3E-34 178.2 9.7 163 17-181 16-192 (194)
84 3cpj_B GTP-binding protein YPT 100.0 6.1E-30 2.1E-34 182.3 9.7 161 17-183 11-177 (223)
85 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.8E-29 6E-34 174.6 11.5 165 17-183 3-181 (186)
86 1m7b_A RND3/RHOE small GTP-bin 100.0 1.9E-29 6.6E-34 174.6 11.3 160 17-183 5-184 (184)
87 2j1l_A RHO-related GTP-binding 100.0 1.7E-29 5.9E-34 178.9 11.2 165 17-183 32-210 (214)
88 2fv8_A H6, RHO-related GTP-bin 100.0 1E-28 3.6E-33 174.0 14.2 165 17-183 23-201 (207)
89 2gco_A H9, RHO-related GTP-bin 100.0 1.1E-29 3.8E-34 178.2 9.2 165 16-182 22-200 (201)
90 2j0v_A RAC-like GTP-binding pr 100.0 2.6E-29 9E-34 177.6 11.0 159 17-182 7-180 (212)
91 2g3y_A GTP-binding protein GEM 100.0 6.5E-29 2.2E-33 175.4 12.8 160 17-182 35-203 (211)
92 3bwd_D RAC-like GTP-binding pr 100.0 1.1E-29 3.8E-34 175.2 8.7 159 17-182 6-181 (182)
93 3gj0_A GTP-binding nuclear pro 100.0 1E-29 3.5E-34 180.8 8.7 160 17-183 13-176 (221)
94 2zej_A Dardarin, leucine-rich 100.0 2.7E-29 9.1E-34 174.0 9.7 163 19-183 2-179 (184)
95 2q3h_A RAS homolog gene family 100.0 5.1E-29 1.7E-33 174.7 11.2 160 16-182 17-195 (201)
96 1gwn_A RHO-related GTP-binding 100.0 4.3E-29 1.5E-33 175.8 10.8 160 17-183 26-205 (205)
97 2lkc_A Translation initiation 100.0 4.6E-28 1.6E-32 166.5 13.9 163 15-183 4-172 (178)
98 3l0i_B RAS-related protein RAB 100.0 8.5E-31 2.9E-35 183.6 -0.9 158 17-183 31-197 (199)
99 1svi_A GTP-binding protein YSX 100.0 1.6E-27 5.4E-32 166.2 15.3 161 16-182 20-195 (195)
100 2qu8_A Putative nucleolar GTP- 100.0 2.2E-27 7.5E-32 169.6 14.8 163 17-182 27-205 (228)
101 3llu_A RAS-related GTP-binding 100.0 1.6E-28 5.3E-33 171.7 8.4 161 16-180 17-195 (196)
102 2gj8_A MNME, tRNA modification 100.0 2.4E-27 8.3E-32 162.5 13.7 154 17-182 2-166 (172)
103 2dyk_A GTP-binding protein; GT 100.0 4.2E-27 1.4E-31 159.1 14.6 149 20-181 2-161 (161)
104 2cjw_A GTP-binding protein GEM 100.0 4.6E-28 1.6E-32 168.9 9.9 160 17-181 4-171 (192)
105 3th5_A RAS-related C3 botulinu 99.9 6.1E-30 2.1E-34 179.9 0.0 163 16-180 27-203 (204)
106 3pqc_A Probable GTP-binding pr 99.9 4E-27 1.4E-31 163.9 13.6 159 17-183 21-195 (195)
107 2wji_A Ferrous iron transport 99.9 2E-26 6.8E-31 156.9 16.4 149 18-181 2-164 (165)
108 3iev_A GTP-binding protein ERA 99.9 3.8E-26 1.3E-30 169.9 17.7 160 17-182 8-182 (308)
109 2cxx_A Probable GTP-binding pr 99.9 1.8E-27 6.2E-32 165.1 8.5 161 20-183 2-185 (190)
110 3r7w_A Gtpase1, GTP-binding pr 99.9 1.3E-26 4.5E-31 172.3 13.3 161 18-181 2-180 (307)
111 1wf3_A GTP-binding protein; GT 99.9 8E-26 2.7E-30 167.5 16.7 156 18-182 6-173 (301)
112 4dhe_A Probable GTP-binding pr 99.9 1.2E-26 4.2E-31 165.0 11.6 161 17-182 27-211 (223)
113 2wkq_A NPH1-1, RAS-related C3 99.9 3.9E-26 1.3E-30 171.3 14.7 166 16-183 152-331 (332)
114 2hjg_A GTP-binding protein ENG 99.9 5.2E-26 1.8E-30 176.6 14.2 160 18-182 174-349 (436)
115 3r7w_B Gtpase2, GTP-binding pr 99.9 1.5E-26 5.1E-31 171.3 10.6 158 21-182 1-174 (331)
116 2f9l_A RAB11B, member RAS onco 99.9 9.9E-26 3.4E-30 157.8 11.9 160 17-182 3-168 (199)
117 2wjg_A FEOB, ferrous iron tran 99.9 3.3E-25 1.1E-29 153.6 14.2 151 18-183 6-170 (188)
118 3a1s_A Iron(II) transport prot 99.9 3.3E-25 1.1E-29 160.9 14.2 150 17-181 3-166 (258)
119 3iby_A Ferrous iron transport 99.9 2.2E-26 7.5E-31 166.9 7.5 145 20-179 2-164 (256)
120 3i8s_A Ferrous iron transport 99.9 1.5E-25 5.2E-30 164.2 11.1 150 18-182 2-169 (274)
121 3c5h_A Glucocorticoid receptor 99.9 1.6E-26 5.4E-31 167.8 5.1 161 17-181 17-254 (255)
122 3dpu_A RAB family protein; roc 99.9 9.2E-26 3.1E-30 179.3 10.0 157 17-183 39-209 (535)
123 3b1v_A Ferrous iron uptake tra 99.9 3.5E-25 1.2E-29 161.8 11.7 148 18-181 2-163 (272)
124 4dcu_A GTP-binding protein ENG 99.9 5.2E-25 1.8E-29 171.8 13.1 160 18-182 194-369 (456)
125 3gee_A MNME, tRNA modification 99.9 8.9E-25 3.1E-29 170.5 14.3 154 16-181 230-397 (476)
126 1xzp_A Probable tRNA modificat 99.9 3.2E-24 1.1E-28 167.6 15.4 152 17-181 241-404 (482)
127 1lnz_A SPO0B-associated GTP-bi 99.9 9.2E-25 3.1E-29 164.0 11.0 158 20-183 159-331 (342)
128 3sjy_A Translation initiation 99.9 6E-24 2E-28 163.5 15.6 164 16-182 5-192 (403)
129 1oix_A RAS-related protein RAB 99.9 1.4E-24 4.8E-29 151.1 10.8 159 17-180 27-190 (191)
130 1mky_A Probable GTP-binding pr 99.9 3.7E-24 1.3E-28 166.3 13.6 152 20-182 2-166 (439)
131 3ohm_A Guanine nucleotide-bind 99.9 8.5E-24 2.9E-28 157.3 14.8 136 48-183 151-319 (327)
132 3k53_A Ferrous iron transport 99.9 4.6E-24 1.6E-28 156.1 12.8 151 18-182 2-166 (271)
133 2e87_A Hypothetical protein PH 99.9 3E-23 1E-27 157.3 16.7 159 17-182 165-336 (357)
134 1mky_A Probable GTP-binding pr 99.9 2.3E-23 7.8E-28 161.9 15.9 159 19-182 180-355 (439)
135 3geh_A MNME, tRNA modification 99.9 5.7E-24 1.9E-28 165.4 12.3 152 17-182 222-384 (462)
136 1cip_A Protein (guanine nucleo 99.9 4.6E-24 1.6E-28 160.8 11.4 134 49-182 178-344 (353)
137 1nrj_B SR-beta, signal recogni 99.9 4.8E-25 1.7E-29 156.3 5.7 118 16-138 9-137 (218)
138 2hjg_A GTP-binding protein ENG 99.9 3.9E-24 1.3E-28 166.0 11.2 150 20-182 4-165 (436)
139 1s0u_A EIF-2-gamma, translatio 99.9 3.2E-23 1.1E-27 159.7 15.7 160 17-181 6-197 (408)
140 1wb1_A Translation elongation 99.9 1.9E-23 6.4E-28 163.7 13.6 159 18-181 18-188 (482)
141 1kk1_A EIF2gamma; initiation o 99.9 2.7E-23 9.3E-28 160.2 14.1 160 17-181 8-199 (410)
142 1ega_A Protein (GTP-binding pr 99.9 2.8E-23 9.7E-28 153.9 13.0 156 18-182 7-175 (301)
143 3qq5_A Small GTP-binding prote 99.9 2.3E-24 7.9E-29 165.7 6.7 154 17-182 32-196 (423)
144 4fid_A G protein alpha subunit 99.9 2.7E-23 9.3E-28 155.1 12.2 134 48-181 145-327 (340)
145 3j2k_7 ERF3, eukaryotic polype 99.9 6.3E-23 2.1E-27 159.2 14.1 154 17-174 15-217 (439)
146 1zcb_A G alpha I/13; GTP-bindi 99.9 6.9E-23 2.4E-27 154.8 13.4 133 50-182 187-353 (362)
147 2qtf_A Protein HFLX, GTP-bindi 99.9 1.4E-22 5E-27 153.4 14.6 161 19-182 178-354 (364)
148 3p26_A Elongation factor 1 alp 99.9 1.8E-23 6.1E-28 164.2 9.8 153 16-171 30-227 (483)
149 3tr5_A RF-3, peptide chain rel 99.9 2.3E-22 7.8E-27 158.8 14.5 115 17-136 11-149 (528)
150 4dcu_A GTP-binding protein ENG 99.9 4.9E-23 1.7E-27 160.7 10.6 152 19-182 23-185 (456)
151 2ged_A SR-beta, signal recogni 99.9 3E-23 1E-27 144.3 7.5 125 17-146 46-181 (193)
152 2ywe_A GTP-binding protein LEP 99.9 1E-21 3.6E-26 156.5 17.2 159 17-182 4-184 (600)
153 2aka_B Dynamin-1; fusion prote 99.9 7.8E-22 2.7E-26 146.0 15.4 172 3-179 7-250 (299)
154 2elf_A Protein translation elo 99.9 1.4E-22 4.7E-27 153.9 11.3 146 21-181 23-179 (370)
155 3cb4_D GTP-binding protein LEP 99.9 6.9E-22 2.4E-26 157.7 15.4 158 18-182 3-182 (599)
156 1zun_B Sulfate adenylate trans 99.9 1.4E-21 5E-26 151.5 16.2 153 16-172 21-214 (434)
157 2xtp_A GTPase IMAP family memb 99.9 8.6E-22 3E-26 143.2 13.7 160 17-182 20-208 (260)
158 2c78_A Elongation factor TU-A; 99.9 4.2E-22 1.4E-26 153.3 12.7 160 17-181 9-211 (405)
159 1d2e_A Elongation factor TU (E 99.9 6.1E-22 2.1E-26 152.0 13.3 159 18-181 2-194 (397)
160 3izy_P Translation initiation 99.9 5.2E-24 1.8E-28 167.7 1.3 160 17-181 2-167 (537)
161 3lxw_A GTPase IMAP family memb 99.9 7.9E-22 2.7E-26 142.4 12.2 164 17-182 19-208 (247)
162 1jny_A EF-1-alpha, elongation 99.9 1.4E-22 4.9E-27 157.2 8.1 152 17-172 4-203 (435)
163 3t5d_A Septin-7; GTP-binding p 99.9 6.6E-22 2.3E-26 144.9 10.8 158 18-181 7-203 (274)
164 1azs_C GS-alpha; complex (lyas 99.9 8E-22 2.7E-26 150.2 11.2 131 52-182 205-385 (402)
165 3lxx_A GTPase IMAP family memb 99.9 1.2E-21 4E-26 140.9 10.4 164 17-182 27-214 (239)
166 2xtz_A Guanine nucleotide-bind 99.9 2.7E-22 9.3E-27 151.1 7.4 121 62-182 181-345 (354)
167 3izq_1 HBS1P, elongation facto 99.9 2.8E-22 9.6E-27 160.8 7.9 153 17-172 165-362 (611)
168 2h5e_A Peptide chain release f 99.9 8.8E-21 3E-25 149.9 15.5 115 17-136 11-149 (529)
169 1g7s_A Translation initiation 99.9 7.2E-22 2.5E-26 157.7 9.2 156 18-181 4-217 (594)
170 1zo1_I IF2, translation initia 99.9 1E-22 3.6E-27 159.1 2.1 157 17-179 2-164 (501)
171 1r5b_A Eukaryotic peptide chai 99.8 2E-22 7E-27 157.4 3.2 155 15-173 39-243 (467)
172 3avx_A Elongation factor TS, e 99.8 1.1E-20 3.6E-25 158.0 13.4 160 17-181 294-485 (1289)
173 1jwy_B Dynamin A GTPase domain 99.8 2.4E-20 8.3E-25 139.0 14.1 176 3-182 6-262 (315)
174 1pui_A ENGB, probable GTP-bind 99.8 1.6E-20 5.6E-25 132.1 12.4 160 14-182 21-199 (210)
175 1f60_A Elongation factor EEF1A 99.8 8.3E-22 2.8E-26 153.6 5.9 151 17-171 5-201 (458)
176 3mca_A HBS1, elongation factor 99.8 3.7E-23 1.3E-27 165.4 -2.2 162 16-181 174-396 (592)
177 1dar_A EF-G, elongation factor 99.8 1.2E-19 4.1E-24 147.6 17.7 115 17-136 10-144 (691)
178 2j69_A Bacterial dynamin-like 99.8 6.9E-20 2.3E-24 149.1 15.6 163 16-182 66-325 (695)
179 2xex_A Elongation factor G; GT 99.8 3.6E-19 1.2E-23 144.8 15.5 116 16-136 7-142 (693)
180 2dy1_A Elongation factor G; tr 99.8 1.5E-18 5E-23 140.8 18.4 114 16-134 6-139 (665)
181 3def_A T7I23.11 protein; chlor 99.8 2.6E-19 8.8E-24 130.3 12.4 118 17-135 34-165 (262)
182 2qag_A Septin-2, protein NEDD5 99.8 2E-20 7E-25 141.7 6.7 158 17-181 35-232 (361)
183 2rdo_7 EF-G, elongation factor 99.8 2.9E-18 9.8E-23 139.7 18.7 115 17-136 8-149 (704)
184 2x2e_A Dynamin-1; nitration, h 99.8 4E-19 1.4E-23 134.4 12.8 171 3-178 12-254 (353)
185 1udx_A The GTP-binding protein 99.8 2.2E-19 7.6E-24 137.8 11.3 159 19-183 157-326 (416)
186 1h65_A Chloroplast outer envel 99.8 4.7E-18 1.6E-22 124.2 14.8 119 17-136 37-169 (270)
187 3vqt_A RF-3, peptide chain rel 99.8 1.8E-18 6.1E-23 137.3 11.8 115 17-136 29-167 (548)
188 3t34_A Dynamin-related protein 99.8 1.2E-18 4.1E-23 132.2 9.7 148 20-175 35-254 (360)
189 1wxq_A GTP-binding protein; st 99.8 2.1E-20 7.2E-25 143.0 -0.8 81 20-100 1-114 (397)
190 3p32_A Probable GTPase RV1496/ 99.8 8.5E-19 2.9E-23 132.7 6.9 109 62-182 170-284 (355)
191 4a9a_A Ribosome-interacting GT 99.7 4.8E-17 1.7E-21 123.1 15.3 112 20-133 73-194 (376)
192 3zvr_A Dynamin-1; hydrolase, D 99.7 1.4E-16 4.9E-21 129.5 15.8 171 3-178 32-274 (772)
193 1n0u_A EF-2, elongation factor 99.7 1.1E-17 3.8E-22 138.6 9.3 113 17-134 17-163 (842)
194 2qpt_A EH domain-containing pr 99.7 3.5E-17 1.2E-21 130.0 11.0 118 18-139 64-236 (550)
195 2www_A Methylmalonic aciduria 99.7 2.5E-17 8.5E-22 124.3 7.8 108 62-181 165-278 (349)
196 1jal_A YCHF protein; nucleotid 99.7 4.9E-16 1.7E-20 117.0 14.1 81 19-99 2-108 (363)
197 2qnr_A Septin-2, protein NEDD5 99.7 1.8E-17 6.1E-22 122.7 5.9 158 17-182 16-214 (301)
198 2wsm_A Hydrogenase expression/ 99.7 2.6E-17 9E-22 116.6 6.4 151 17-182 28-214 (221)
199 3j25_A Tetracycline resistance 99.7 4.2E-18 1.4E-22 137.5 0.9 158 20-182 3-239 (638)
200 1yrb_A ATP(GTP)binding protein 99.7 1E-16 3.4E-21 116.4 6.7 118 64-182 109-257 (262)
201 2p67_A LAO/AO transport system 99.7 2.4E-16 8.1E-21 118.7 8.4 108 62-181 147-260 (341)
202 2qag_C Septin-7; cell cycle, c 99.7 8.8E-17 3E-21 123.5 5.5 156 18-180 30-225 (418)
203 1u0l_A Probable GTPase ENGC; p 99.6 2.4E-17 8.2E-22 122.1 2.2 133 34-178 32-169 (301)
204 4fn5_A EF-G 1, elongation fact 99.6 1.5E-15 5E-20 124.2 12.3 115 16-135 10-151 (709)
205 2dby_A GTP-binding protein; GD 99.6 5.7E-15 2E-19 111.8 12.5 80 20-99 2-111 (368)
206 2hf9_A Probable hydrogenase ni 99.6 1.1E-15 3.9E-20 108.5 8.2 152 17-183 36-225 (226)
207 3l82_B F-box only protein 4; T 99.6 3.5E-15 1.2E-19 103.2 10.1 172 10-183 7-224 (227)
208 2qm8_A GTPase/ATPase; G protei 99.6 1.2E-14 4.1E-19 109.1 9.4 154 16-181 52-260 (337)
209 3l2o_B F-box only protein 4; s 99.5 5.2E-14 1.8E-18 101.8 8.6 112 71-184 194-310 (312)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 4.1E-13 1.4E-17 102.1 7.9 85 17-101 20-130 (396)
211 2j37_W Signal recognition part 99.2 1.7E-11 5.7E-16 96.2 8.1 153 19-179 101-310 (504)
212 3ec1_A YQEH GTPase; atnos1, at 99.2 2.3E-12 7.8E-17 97.9 1.9 124 5-138 150-291 (369)
213 3h2y_A GTPase family protein; 99.2 3.6E-12 1.2E-16 96.7 2.7 127 5-141 148-293 (368)
214 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 8.1E-11 2.8E-15 89.7 10.0 83 17-99 18-127 (392)
215 2yv5_A YJEQ protein; hydrolase 99.2 1.2E-11 3.9E-16 91.6 4.3 96 74-178 66-165 (302)
216 2qag_B Septin-6, protein NEDD5 99.2 5.9E-11 2E-15 91.1 7.7 137 20-163 43-217 (427)
217 1tq4_A IIGP1, interferon-induc 99.1 1.1E-09 3.6E-14 84.1 13.2 159 17-182 67-253 (413)
218 1puj_A YLQF, conserved hypothe 99.0 3.7E-10 1.3E-14 82.7 6.8 102 68-181 3-105 (282)
219 3h2y_A GTPase family protein; 99.0 4E-10 1.4E-14 85.5 6.5 101 73-181 55-159 (368)
220 3sop_A Neuronal-specific septi 99.0 2.6E-09 8.9E-14 77.7 10.5 115 19-139 2-158 (270)
221 3ec1_A YQEH GTPase; atnos1, at 99.0 4.3E-10 1.5E-14 85.4 6.2 102 73-182 57-162 (369)
222 3dm5_A SRP54, signal recogniti 98.8 2.6E-09 8.8E-14 82.4 5.2 111 19-136 100-254 (443)
223 2v3c_C SRP54, signal recogniti 98.8 6.5E-10 2.2E-14 85.9 1.3 153 20-180 100-309 (432)
224 1puj_A YLQF, conserved hypothe 98.8 1.2E-08 4.2E-13 74.6 6.7 56 17-75 118-176 (282)
225 3szr_A Interferon-induced GTP- 98.7 4.9E-08 1.7E-12 78.7 9.0 23 21-43 47-69 (608)
226 3cnl_A YLQF, putative uncharac 98.7 4.7E-09 1.6E-13 76.0 2.7 53 20-75 100-155 (262)
227 1f5n_A Interferon-induced guan 98.7 3.7E-08 1.3E-12 78.6 7.9 69 6-75 26-102 (592)
228 3kl4_A SRP54, signal recogniti 98.6 3.1E-08 1E-12 76.4 3.4 66 63-135 179-252 (433)
229 3cnl_A YLQF, putative uncharac 98.5 4.2E-08 1.4E-12 71.0 3.7 93 71-178 4-97 (262)
230 1j8m_F SRP54, signal recogniti 98.5 1.2E-07 4.2E-12 69.8 4.4 94 62-172 179-281 (297)
231 3e70_C DPA, signal recognition 98.3 3.6E-07 1.2E-11 68.2 3.0 23 18-40 128-150 (328)
232 1t9h_A YLOQ, probable GTPase E 98.2 5.4E-07 1.8E-11 66.6 2.1 84 83-175 82-170 (307)
233 3q5d_A Atlastin-1; G protein, 98.1 2.4E-05 8.2E-10 60.6 9.8 25 17-41 65-89 (447)
234 2yhs_A FTSY, cell division pro 98.1 2.4E-06 8E-11 66.8 3.5 23 18-40 292-314 (503)
235 1rj9_A FTSY, signal recognitio 98.0 4.3E-06 1.5E-10 61.7 4.2 22 19-40 102-123 (304)
236 2rcn_A Probable GTPase ENGC; Y 97.9 1.7E-05 5.6E-10 59.8 6.2 83 84-176 127-213 (358)
237 2xxa_A Signal recognition part 97.9 7.3E-05 2.5E-09 57.8 9.7 67 62-136 182-255 (433)
238 3ec2_A DNA replication protein 97.8 2.1E-05 7.3E-10 53.3 4.3 37 5-41 24-60 (180)
239 3c8u_A Fructokinase; YP_612366 97.8 2E-05 6.7E-10 54.9 4.1 36 5-41 9-44 (208)
240 1np6_A Molybdopterin-guanine d 97.8 7.1E-05 2.4E-09 50.7 6.3 22 20-41 7-28 (174)
241 1vma_A Cell division protein F 97.7 1.3E-05 4.6E-10 59.1 2.9 21 20-40 105-125 (306)
242 2ffh_A Protein (FFH); SRP54, s 97.7 1.9E-05 6.6E-10 60.8 3.7 67 62-135 179-251 (425)
243 1bif_A 6-phosphofructo-2-kinas 97.7 4.8E-06 1.6E-10 65.2 -0.2 84 17-101 37-134 (469)
244 1ye8_A Protein THEP1, hypothet 97.7 2.3E-05 7.9E-10 53.3 3.1 22 20-41 1-22 (178)
245 1rz3_A Hypothetical protein rb 97.7 6.3E-05 2.1E-09 52.0 5.2 38 4-41 7-44 (201)
246 1zu4_A FTSY; GTPase, signal re 97.6 0.00011 3.7E-09 54.6 6.4 67 62-135 190-268 (320)
247 4dzz_A Plasmid partitioning pr 97.6 0.00038 1.3E-08 47.9 8.7 69 62-134 74-143 (206)
248 1lvg_A Guanylate kinase, GMP k 97.6 4E-05 1.4E-09 53.0 2.8 24 18-41 3-26 (198)
249 1kgd_A CASK, peripheral plasma 97.5 4.7E-05 1.6E-09 51.7 3.0 23 20-42 6-28 (180)
250 3lnc_A Guanylate kinase, GMP k 97.5 3.4E-05 1.2E-09 54.5 2.1 25 16-40 24-48 (231)
251 1odf_A YGR205W, hypothetical 3 97.5 0.00015 5E-09 53.2 5.4 37 4-40 13-52 (290)
252 3tr0_A Guanylate kinase, GMP k 97.5 7E-05 2.4E-09 51.7 3.4 26 17-42 5-30 (205)
253 3tau_A Guanylate kinase, GMP k 97.5 7.6E-05 2.6E-09 51.9 3.5 27 16-42 5-31 (208)
254 1zp6_A Hypothetical protein AT 97.5 8.3E-05 2.8E-09 50.7 3.5 26 17-42 7-32 (191)
255 3a00_A Guanylate kinase, GMP k 97.4 8.1E-05 2.8E-09 50.8 3.0 20 22-41 4-23 (186)
256 1znw_A Guanylate kinase, GMP k 97.4 7.9E-05 2.7E-09 51.7 2.9 27 16-42 17-43 (207)
257 4gp7_A Metallophosphoesterase; 97.4 7.8E-05 2.7E-09 50.2 2.5 24 17-40 7-30 (171)
258 1z6g_A Guanylate kinase; struc 97.4 9.2E-05 3.1E-09 51.9 2.8 26 17-42 21-46 (218)
259 2bbw_A Adenylate kinase 4, AK4 97.4 0.00012 4.1E-09 52.2 3.4 23 18-40 26-48 (246)
260 1htw_A HI0065; nucleotide-bind 97.3 0.00031 1.1E-08 46.7 5.0 28 16-43 30-57 (158)
261 3asz_A Uridine kinase; cytidin 97.3 0.00014 4.9E-09 50.4 3.5 25 17-41 4-28 (211)
262 1kag_A SKI, shikimate kinase I 97.3 0.00012 4.1E-09 49.1 2.9 22 20-41 5-26 (173)
263 1cke_A CK, MSSA, protein (cyti 97.3 0.00014 4.9E-09 50.9 3.4 23 19-41 5-27 (227)
264 3tif_A Uncharacterized ABC tra 97.3 0.00011 3.9E-09 52.1 2.8 25 17-41 29-53 (235)
265 3ney_A 55 kDa erythrocyte memb 97.3 0.00013 4.5E-09 50.3 3.0 25 18-42 18-42 (197)
266 1jbk_A CLPB protein; beta barr 97.3 0.00028 9.5E-09 47.6 4.6 24 18-41 42-65 (195)
267 2j41_A Guanylate kinase; GMP, 97.3 0.00017 5.6E-09 49.8 3.4 27 17-43 4-30 (207)
268 2bdt_A BH3686; alpha-beta prot 97.3 0.00015 5E-09 49.5 3.0 21 21-41 4-24 (189)
269 1s96_A Guanylate kinase, GMP k 97.3 0.00017 6E-09 50.6 3.3 26 17-42 14-39 (219)
270 3cm0_A Adenylate kinase; ATP-b 97.3 0.0002 6.9E-09 48.6 3.6 23 18-40 3-25 (186)
271 2pcj_A ABC transporter, lipopr 97.3 0.00014 4.8E-09 51.2 2.8 24 18-41 29-52 (224)
272 3lw7_A Adenylate kinase relate 97.3 0.00017 5.8E-09 48.2 3.1 20 20-39 2-21 (179)
273 2eyu_A Twitching motility prot 97.2 0.00027 9.2E-09 51.0 4.2 26 16-41 22-47 (261)
274 1ly1_A Polynucleotide kinase; 97.2 0.00017 5.9E-09 48.5 3.0 22 20-41 3-24 (181)
275 3vaa_A Shikimate kinase, SK; s 97.2 0.0002 6.9E-09 49.3 3.3 24 17-40 23-46 (199)
276 2onk_A Molybdate/tungstate ABC 97.2 0.00017 5.9E-09 51.3 3.0 22 20-41 25-46 (240)
277 2qor_A Guanylate kinase; phosp 97.2 0.00018 6.1E-09 49.8 3.0 25 17-41 10-34 (204)
278 2rcn_A Probable GTPase ENGC; Y 97.2 0.00019 6.3E-09 54.1 3.3 24 20-43 216-239 (358)
279 3kb2_A SPBC2 prophage-derived 97.2 0.00017 5.9E-09 48.1 2.8 21 21-41 3-23 (173)
280 2rhm_A Putative kinase; P-loop 97.2 0.00023 7.8E-09 48.5 3.5 24 18-41 4-27 (193)
281 1ex7_A Guanylate kinase; subst 97.2 0.00019 6.6E-09 49.0 3.0 21 22-42 4-24 (186)
282 3tlx_A Adenylate kinase 2; str 97.2 0.00052 1.8E-08 48.9 5.3 24 17-40 27-50 (243)
283 1tue_A Replication protein E1; 97.2 0.00034 1.2E-08 48.4 4.1 35 5-41 46-80 (212)
284 2jeo_A Uridine-cytidine kinase 97.2 0.00024 8.3E-09 50.6 3.6 26 16-41 22-47 (245)
285 3gfo_A Cobalt import ATP-bindi 97.2 0.00018 6E-09 52.4 2.8 24 18-41 33-56 (275)
286 1sgw_A Putative ABC transporte 97.2 0.00018 6.3E-09 50.3 2.8 24 18-41 34-57 (214)
287 4eun_A Thermoresistant glucoki 97.2 0.00023 8E-09 49.0 3.3 24 18-41 28-51 (200)
288 3fb4_A Adenylate kinase; psych 97.2 0.00021 7.3E-09 49.7 3.1 21 20-40 1-21 (216)
289 1b0u_A Histidine permease; ABC 97.2 0.00018 6.3E-09 51.9 2.8 24 18-41 31-54 (262)
290 2v9p_A Replication protein E1; 97.2 0.00024 8.2E-09 52.4 3.4 26 16-41 123-148 (305)
291 3uie_A Adenylyl-sulfate kinase 97.2 0.00028 9.6E-09 48.6 3.6 25 17-41 23-47 (200)
292 3tqc_A Pantothenate kinase; bi 97.2 0.00045 1.6E-08 51.3 4.9 25 17-41 90-114 (321)
293 1knq_A Gluconate kinase; ALFA/ 97.2 0.00028 9.6E-09 47.4 3.5 24 18-41 7-30 (175)
294 2ehv_A Hypothetical protein PH 97.2 0.00021 7.1E-09 50.7 3.0 24 17-40 28-51 (251)
295 3dl0_A Adenylate kinase; phosp 97.2 0.00023 8E-09 49.5 3.1 21 20-40 1-21 (216)
296 1g6h_A High-affinity branched- 97.2 0.0002 7E-09 51.5 2.8 25 17-41 31-55 (257)
297 4g1u_C Hemin import ATP-bindin 97.2 0.0002 6.9E-09 51.8 2.8 25 17-41 35-59 (266)
298 3b85_A Phosphate starvation-in 97.2 0.00018 6.2E-09 50.1 2.5 26 17-42 20-45 (208)
299 2i3b_A HCR-ntpase, human cance 97.2 0.00021 7.3E-09 49.0 2.8 21 21-41 3-23 (189)
300 2pze_A Cystic fibrosis transme 97.2 0.00021 7.3E-09 50.5 2.8 24 18-41 33-56 (229)
301 2v54_A DTMP kinase, thymidylat 97.2 0.00028 9.7E-09 48.5 3.4 25 18-42 3-27 (204)
302 2ff7_A Alpha-hemolysin translo 97.2 0.00024 8.3E-09 50.8 3.1 24 18-41 34-57 (247)
303 3t61_A Gluconokinase; PSI-biol 97.1 0.00024 8.2E-09 49.0 3.0 23 19-41 18-40 (202)
304 2olj_A Amino acid ABC transpor 97.1 0.00022 7.5E-09 51.5 2.8 24 18-41 49-72 (263)
305 2cbz_A Multidrug resistance-as 97.1 0.00023 7.8E-09 50.6 2.9 25 17-41 29-53 (237)
306 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00025 8.5E-09 50.8 3.1 25 18-42 28-52 (250)
307 1ji0_A ABC transporter; ATP bi 97.1 0.00023 7.8E-09 50.7 2.8 24 18-41 31-54 (240)
308 2p65_A Hypothetical protein PF 97.1 0.00036 1.2E-08 47.0 3.7 24 18-41 42-65 (187)
309 1vpl_A ABC transporter, ATP-bi 97.1 0.00023 7.9E-09 51.2 2.8 25 17-41 39-63 (256)
310 2if2_A Dephospho-COA kinase; a 97.1 0.00029 9.8E-09 48.6 3.2 22 20-41 2-23 (204)
311 1aky_A Adenylate kinase; ATP:A 97.1 0.0003 1E-08 49.1 3.4 23 18-40 3-25 (220)
312 2qi9_C Vitamin B12 import ATP- 97.1 0.00025 8.4E-09 50.8 2.8 25 17-41 24-48 (249)
313 2zu0_C Probable ATP-dependent 97.1 0.00027 9.2E-09 51.1 3.0 26 17-42 44-69 (267)
314 1y63_A LMAJ004144AAA protein; 97.1 0.00034 1.1E-08 47.6 3.4 26 17-42 8-33 (184)
315 2w58_A DNAI, primosome compone 97.1 0.00074 2.5E-08 46.4 5.2 22 20-41 55-76 (202)
316 4a74_A DNA repair and recombin 97.1 0.00027 9.4E-09 49.5 3.0 26 16-41 22-47 (231)
317 2jaq_A Deoxyguanosine kinase; 97.1 0.00031 1.1E-08 48.2 3.2 21 21-41 2-22 (205)
318 3trf_A Shikimate kinase, SK; a 97.1 0.00031 1.1E-08 47.6 3.2 22 19-40 5-26 (185)
319 3aez_A Pantothenate kinase; tr 97.1 0.00034 1.2E-08 51.8 3.6 26 16-41 87-112 (312)
320 1mv5_A LMRA, multidrug resista 97.1 0.00027 9.4E-09 50.4 3.0 25 17-41 26-50 (243)
321 2yv5_A YJEQ protein; hydrolase 97.1 0.00027 9.3E-09 52.0 3.0 22 19-40 165-186 (302)
322 1qhx_A CPT, protein (chloramph 97.1 0.00029 9.8E-09 47.4 2.9 22 20-41 4-25 (178)
323 2qt1_A Nicotinamide riboside k 97.1 0.0004 1.4E-08 48.0 3.6 26 17-42 19-44 (207)
324 1nks_A Adenylate kinase; therm 97.1 0.00036 1.2E-08 47.4 3.3 21 21-41 3-23 (194)
325 1kht_A Adenylate kinase; phosp 97.1 0.00035 1.2E-08 47.5 3.3 22 20-41 4-25 (192)
326 1jjv_A Dephospho-COA kinase; P 97.1 0.00034 1.2E-08 48.3 3.2 22 20-41 3-24 (206)
327 2ihy_A ABC transporter, ATP-bi 97.1 0.0003 1E-08 51.2 3.1 24 18-41 46-69 (279)
328 2c95_A Adenylate kinase 1; tra 97.1 0.00033 1.1E-08 47.8 3.1 24 17-40 7-30 (196)
329 3bos_A Putative DNA replicatio 97.1 0.00061 2.1E-08 47.8 4.6 24 18-41 51-74 (242)
330 2nq2_C Hypothetical ABC transp 97.1 0.00028 9.6E-09 50.6 2.8 24 18-41 30-53 (253)
331 2yz2_A Putative ABC transporte 97.1 0.00029 9.9E-09 50.9 2.8 25 17-41 31-55 (266)
332 1uf9_A TT1252 protein; P-loop, 97.1 0.0004 1.4E-08 47.7 3.4 27 16-42 5-31 (203)
333 2kjq_A DNAA-related protein; s 97.1 0.0003 1E-08 46.2 2.7 24 18-41 35-58 (149)
334 3sr0_A Adenylate kinase; phosp 97.1 0.00038 1.3E-08 48.4 3.3 21 20-40 1-21 (206)
335 2plr_A DTMP kinase, probable t 97.1 0.00041 1.4E-08 47.9 3.5 23 19-41 4-26 (213)
336 1e4v_A Adenylate kinase; trans 97.1 0.00037 1.3E-08 48.5 3.3 21 20-40 1-21 (214)
337 1u0l_A Probable GTPase ENGC; p 97.1 0.00038 1.3E-08 51.2 3.4 23 20-42 170-192 (301)
338 2ghi_A Transport protein; mult 97.1 0.00031 1.1E-08 50.6 2.9 25 17-41 44-68 (260)
339 1nn5_A Similar to deoxythymidy 97.1 0.00041 1.4E-08 48.0 3.4 25 17-41 7-31 (215)
340 3n70_A Transport activator; si 97.1 0.00074 2.5E-08 44.0 4.5 38 4-42 10-47 (145)
341 3jvv_A Twitching mobility prot 97.1 0.0004 1.4E-08 52.3 3.6 24 18-41 122-145 (356)
342 4e22_A Cytidylate kinase; P-lo 97.1 0.00041 1.4E-08 49.7 3.5 25 16-40 24-48 (252)
343 1t9h_A YLOQ, probable GTPase E 97.0 9.9E-05 3.4E-09 54.5 0.2 25 18-42 172-196 (307)
344 1tev_A UMP-CMP kinase; ploop, 97.0 0.00044 1.5E-08 47.0 3.4 22 19-40 3-24 (196)
345 2wwf_A Thymidilate kinase, put 97.0 0.00042 1.4E-08 47.9 3.3 25 17-41 8-32 (212)
346 2x8a_A Nuclear valosin-contain 97.0 0.00064 2.2E-08 49.3 4.4 21 21-41 46-66 (274)
347 2cdn_A Adenylate kinase; phosp 97.0 0.00047 1.6E-08 47.4 3.4 25 17-41 18-42 (201)
348 2ewv_A Twitching motility prot 97.0 0.00054 1.9E-08 52.0 4.0 26 16-41 133-158 (372)
349 2ixe_A Antigen peptide transpo 97.0 0.00035 1.2E-08 50.6 2.9 25 17-41 43-67 (271)
350 1zd8_A GTP:AMP phosphotransfer 97.0 0.00044 1.5E-08 48.6 3.3 23 18-40 6-28 (227)
351 2pjz_A Hypothetical protein ST 97.0 0.00039 1.3E-08 50.2 3.1 24 19-42 30-53 (263)
352 1p9r_A General secretion pathw 97.0 0.00069 2.4E-08 52.2 4.6 25 17-41 165-189 (418)
353 1sq5_A Pantothenate kinase; P- 97.0 0.00064 2.2E-08 50.2 4.2 25 17-41 78-102 (308)
354 2oap_1 GSPE-2, type II secreti 97.0 0.00066 2.3E-08 53.6 4.4 26 17-42 258-283 (511)
355 2pt5_A Shikimate kinase, SK; a 97.0 0.00048 1.6E-08 45.9 3.1 21 21-41 2-22 (168)
356 3be4_A Adenylate kinase; malar 97.0 0.00055 1.9E-08 47.8 3.5 23 18-40 4-26 (217)
357 2f1r_A Molybdopterin-guanine d 97.0 0.00021 7.3E-09 48.2 1.3 21 21-41 4-24 (171)
358 1vht_A Dephospho-COA kinase; s 97.0 0.00054 1.9E-08 47.7 3.4 24 18-41 3-26 (218)
359 3k9g_A PF-32 protein; ssgcid, 97.0 0.014 4.8E-07 41.8 11.0 66 62-132 143-208 (267)
360 4b4t_L 26S protease subunit RP 97.0 0.015 5.1E-07 45.0 11.5 27 15-41 211-237 (437)
361 2yvu_A Probable adenylyl-sulfa 96.9 0.00064 2.2E-08 46.2 3.6 24 17-40 11-34 (186)
362 1zak_A Adenylate kinase; ATP:A 96.9 0.00047 1.6E-08 48.2 3.0 23 18-40 4-26 (222)
363 2chg_A Replication factor C sm 96.9 0.0011 3.8E-08 45.7 4.9 21 21-41 40-60 (226)
364 1via_A Shikimate kinase; struc 96.9 0.00043 1.5E-08 46.5 2.6 20 21-40 6-25 (175)
365 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00047 1.6E-08 51.9 3.0 24 18-41 29-52 (359)
366 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0006 2.1E-08 49.0 3.5 23 19-41 4-26 (260)
367 1lw7_A Transcriptional regulat 96.9 0.00038 1.3E-08 52.6 2.5 23 19-41 170-192 (365)
368 1d2n_A N-ethylmaleimide-sensit 96.9 0.0013 4.3E-08 47.5 5.1 27 16-42 61-87 (272)
369 3iij_A Coilin-interacting nucl 96.9 0.00052 1.8E-08 46.3 2.9 23 18-40 10-32 (180)
370 2bwj_A Adenylate kinase 5; pho 96.9 0.00047 1.6E-08 47.2 2.7 24 18-41 11-34 (199)
371 1ixz_A ATP-dependent metallopr 96.9 0.0009 3.1E-08 47.8 4.3 22 21-42 51-72 (254)
372 3r20_A Cytidylate kinase; stru 96.9 0.00057 2E-08 48.4 3.1 25 16-40 6-30 (233)
373 2xb4_A Adenylate kinase; ATP-b 96.9 0.00062 2.1E-08 47.8 3.2 20 21-40 2-21 (223)
374 3cwq_A Para family chromosome 96.9 0.0062 2.1E-07 42.2 8.3 68 62-135 66-134 (209)
375 1gvn_B Zeta; postsegregational 96.9 0.00068 2.3E-08 49.5 3.4 24 18-41 32-55 (287)
376 1ukz_A Uridylate kinase; trans 96.9 0.00077 2.6E-08 46.3 3.6 23 18-40 14-36 (203)
377 3end_A Light-independent proto 96.9 0.0027 9.1E-08 46.7 6.6 81 63-147 156-237 (307)
378 1z47_A CYSA, putative ABC-tran 96.9 0.00057 2E-08 51.4 3.1 24 18-41 40-63 (355)
379 2pbr_A DTMP kinase, thymidylat 96.9 0.00064 2.2E-08 46.2 3.1 21 21-41 2-22 (195)
380 3nh6_A ATP-binding cassette SU 96.9 0.00031 1.1E-08 51.8 1.6 25 17-41 78-102 (306)
381 3tui_C Methionine import ATP-b 96.9 0.00058 2E-08 51.5 3.0 24 18-41 53-76 (366)
382 2yyz_A Sugar ABC transporter, 96.9 0.0006 2E-08 51.4 3.1 24 18-41 28-51 (359)
383 2pez_A Bifunctional 3'-phospho 96.8 0.0008 2.7E-08 45.4 3.4 24 18-41 4-27 (179)
384 3rlf_A Maltose/maltodextrin im 96.8 0.00062 2.1E-08 51.7 3.0 24 18-41 28-51 (381)
385 2bbs_A Cystic fibrosis transme 96.8 0.00059 2E-08 50.0 2.8 24 18-41 63-86 (290)
386 2qgz_A Helicase loader, putati 96.8 0.0016 5.4E-08 48.1 5.1 36 6-41 139-174 (308)
387 2it1_A 362AA long hypothetical 96.8 0.00064 2.2E-08 51.3 3.0 24 18-41 28-51 (362)
388 2gza_A Type IV secretion syste 96.8 0.00048 1.7E-08 52.0 2.4 26 16-41 172-197 (361)
389 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00068 2.3E-08 47.4 3.0 24 17-40 21-44 (235)
390 1gtv_A TMK, thymidylate kinase 96.8 0.00027 9.4E-09 49.0 0.9 20 21-40 2-21 (214)
391 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00057 2E-08 51.0 2.6 26 17-42 169-194 (330)
392 2z0h_A DTMP kinase, thymidylat 96.8 0.00078 2.7E-08 46.0 3.1 21 21-41 2-22 (197)
393 2p5t_B PEZT; postsegregational 96.8 0.00057 2E-08 48.9 2.5 24 18-41 31-54 (253)
394 1g29_1 MALK, maltose transport 96.8 0.00069 2.4E-08 51.3 3.1 23 19-41 29-51 (372)
395 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0016 5.3E-08 46.5 4.8 24 18-41 38-61 (262)
396 1xjc_A MOBB protein homolog; s 96.8 0.0009 3.1E-08 44.9 3.3 22 20-41 5-26 (169)
397 2ze6_A Isopentenyl transferase 96.8 0.00073 2.5E-08 48.4 3.0 21 21-41 3-23 (253)
398 3pfi_A Holliday junction ATP-d 96.8 0.004 1.4E-07 46.2 7.1 38 5-42 39-78 (338)
399 1v43_A Sugar-binding transport 96.8 0.00073 2.5E-08 51.2 3.0 24 18-41 36-59 (372)
400 1iy2_A ATP-dependent metallopr 96.8 0.0013 4.6E-08 47.6 4.3 22 21-42 75-96 (278)
401 1e6c_A Shikimate kinase; phosp 96.8 0.0008 2.7E-08 44.9 2.9 21 21-41 4-24 (173)
402 3kta_A Chromosome segregation 96.8 0.00084 2.9E-08 45.3 3.0 21 21-41 28-48 (182)
403 1qf9_A UMP/CMP kinase, protein 96.8 0.0011 3.8E-08 44.9 3.6 22 20-41 7-28 (194)
404 1in4_A RUVB, holliday junction 96.8 0.00073 2.5E-08 50.4 2.9 22 20-41 52-73 (334)
405 2vli_A Antibiotic resistance p 96.8 0.00058 2E-08 46.1 2.2 23 19-41 5-27 (183)
406 1fnn_A CDC6P, cell division co 96.8 0.0012 4E-08 49.9 4.0 38 5-42 27-67 (389)
407 1ak2_A Adenylate kinase isoenz 96.8 0.001 3.4E-08 47.0 3.4 23 18-40 15-37 (233)
408 4ido_A Atlastin-1; GTPase, GTP 96.8 0.021 7.1E-07 44.3 10.9 24 17-40 65-88 (457)
409 1u0j_A DNA replication protein 96.8 0.002 7E-08 46.4 5.0 23 19-41 104-126 (267)
410 3h4m_A Proteasome-activating n 96.8 0.0014 4.7E-08 47.5 4.2 26 17-42 49-74 (285)
411 2iyv_A Shikimate kinase, SK; t 96.7 0.00086 2.9E-08 45.4 2.9 21 21-41 4-24 (184)
412 3gd7_A Fusion complex of cysti 96.7 0.0009 3.1E-08 51.0 3.0 24 18-41 46-69 (390)
413 1m7g_A Adenylylsulfate kinase; 96.7 0.0013 4.5E-08 45.6 3.6 24 17-40 23-46 (211)
414 3co5_A Putative two-component 96.7 0.00095 3.2E-08 43.4 2.7 36 5-41 14-49 (143)
415 1zuh_A Shikimate kinase; alpha 96.7 0.0011 3.7E-08 44.2 3.1 22 20-41 8-29 (168)
416 1cr0_A DNA primase/helicase; R 96.7 0.00096 3.3E-08 48.8 3.0 26 16-41 32-57 (296)
417 2grj_A Dephospho-COA kinase; T 96.7 0.0012 4.3E-08 45.2 3.4 26 17-42 10-35 (192)
418 4eaq_A DTMP kinase, thymidylat 96.7 0.0013 4.6E-08 46.3 3.6 25 17-41 24-48 (229)
419 1njg_A DNA polymerase III subu 96.7 0.0018 6.1E-08 45.2 4.3 21 21-41 47-67 (250)
420 3d31_A Sulfate/molybdate ABC t 96.7 0.00058 2E-08 51.3 1.8 24 18-41 25-48 (348)
421 3b9q_A Chloroplast SRP recepto 96.7 0.0012 4.2E-08 48.6 3.5 23 18-40 99-121 (302)
422 2vp4_A Deoxynucleoside kinase; 96.7 0.00088 3E-08 47.2 2.6 26 17-42 18-43 (230)
423 2cvh_A DNA repair and recombin 96.7 0.0011 3.8E-08 46.0 3.0 25 17-41 18-42 (220)
424 3cf0_A Transitional endoplasmi 96.6 0.0019 6.7E-08 47.4 4.4 25 17-41 47-71 (301)
425 1uj2_A Uridine-cytidine kinase 96.6 0.0013 4.6E-08 46.9 3.4 25 17-41 20-44 (252)
426 1n0w_A DNA repair protein RAD5 96.6 0.0011 3.9E-08 46.6 3.0 26 16-41 21-46 (243)
427 3syl_A Protein CBBX; photosynt 96.6 0.0024 8.2E-08 46.8 4.8 23 18-40 66-88 (309)
428 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0029 9.8E-08 47.5 5.2 37 4-40 8-45 (359)
429 1sxj_C Activator 1 40 kDa subu 96.6 0.0018 6.2E-08 48.3 4.2 22 21-42 48-69 (340)
430 4b4t_I 26S protease regulatory 96.6 0.022 7.4E-07 43.9 10.0 31 11-41 208-238 (437)
431 1lv7_A FTSH; alpha/beta domain 96.6 0.0011 3.7E-08 47.4 2.8 23 19-41 45-67 (257)
432 3umf_A Adenylate kinase; rossm 96.6 0.0016 5.6E-08 45.5 3.6 21 20-40 30-50 (217)
433 2f6r_A COA synthase, bifunctio 96.6 0.0015 5.1E-08 47.5 3.4 23 18-40 74-96 (281)
434 2npi_A Protein CLP1; CLP1-PCF1 96.6 0.0012 4E-08 51.5 2.9 26 16-41 135-160 (460)
435 4b4t_J 26S protease regulatory 96.6 0.024 8.1E-07 43.3 10.0 28 14-41 177-204 (405)
436 1oxx_K GLCV, glucose, ABC tran 96.6 0.00056 1.9E-08 51.5 1.1 24 18-41 30-53 (353)
437 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0013 4.5E-08 43.1 2.8 22 18-40 23-44 (149)
438 1nij_A Hypothetical protein YJ 96.6 0.0011 3.9E-08 49.1 2.7 22 21-42 6-27 (318)
439 2px0_A Flagellar biosynthesis 96.6 0.0033 1.1E-07 46.1 5.1 22 19-40 105-126 (296)
440 4b4t_K 26S protease regulatory 96.5 0.0024 8.3E-08 49.2 4.5 30 12-41 199-228 (428)
441 2obl_A ESCN; ATPase, hydrolase 96.5 0.0014 4.8E-08 49.2 3.1 29 15-43 67-95 (347)
442 4b4t_M 26S protease regulatory 96.5 0.0023 8E-08 49.4 4.3 30 12-41 208-237 (434)
443 1sxj_E Activator 1 40 kDa subu 96.5 0.002 6.9E-08 48.1 3.9 35 7-41 22-58 (354)
444 3nwj_A ATSK2; P loop, shikimat 96.5 0.0013 4.5E-08 47.1 2.7 22 19-40 48-69 (250)
445 3gmt_A Adenylate kinase; ssgci 96.5 0.0018 6.2E-08 45.7 3.2 23 18-40 7-29 (230)
446 2qby_B CDC6 homolog 3, cell di 96.5 0.0033 1.1E-07 47.4 5.0 37 5-41 30-67 (384)
447 3t15_A Ribulose bisphosphate c 96.5 0.0039 1.3E-07 45.6 5.2 24 18-41 35-58 (293)
448 2og2_A Putative signal recogni 96.5 0.0018 6.3E-08 48.8 3.4 23 18-40 156-178 (359)
449 3la6_A Tyrosine-protein kinase 96.5 0.1 3.5E-06 38.0 12.5 67 63-134 201-267 (286)
450 1svm_A Large T antigen; AAA+ f 96.5 0.0021 7.2E-08 48.8 3.7 26 16-41 166-191 (377)
451 1ltq_A Polynucleotide kinase; 96.5 0.0017 5.7E-08 47.5 3.0 22 20-41 3-24 (301)
452 1nlf_A Regulatory protein REPA 96.4 0.0018 6.1E-08 47.0 3.0 24 18-41 29-52 (279)
453 2qby_A CDC6 homolog 1, cell di 96.4 0.0022 7.4E-08 48.3 3.5 23 19-41 45-67 (386)
454 1a7j_A Phosphoribulokinase; tr 96.4 0.0011 3.8E-08 48.5 1.8 25 17-41 3-27 (290)
455 3te6_A Regulatory protein SIR3 96.4 0.0027 9.2E-08 47.1 3.7 35 7-41 32-67 (318)
456 3b9p_A CG5977-PA, isoform A; A 96.4 0.0019 6.7E-08 47.0 2.9 24 18-41 53-76 (297)
457 1q3t_A Cytidylate kinase; nucl 96.4 0.0026 8.8E-08 44.9 3.5 24 18-41 15-38 (236)
458 1sxj_D Activator 1 41 kDa subu 96.4 0.003 1E-07 47.0 4.0 21 21-41 60-80 (353)
459 1yqt_A RNAse L inhibitor; ATP- 96.4 0.0029 1E-07 50.3 4.0 25 18-42 46-70 (538)
460 1sxj_A Activator 1 95 kDa subu 96.3 0.0032 1.1E-07 49.8 4.2 23 20-42 78-100 (516)
461 3b5x_A Lipid A export ATP-bind 96.3 0.0034 1.2E-07 50.4 4.3 25 17-41 367-391 (582)
462 3euj_A Chromosome partition pr 96.3 0.002 6.8E-08 50.4 2.9 21 20-40 30-50 (483)
463 2dr3_A UPF0273 protein PH0284; 96.3 0.0023 7.8E-08 45.2 3.0 24 17-40 21-44 (247)
464 3pxg_A Negative regulator of g 96.3 0.0043 1.5E-07 48.5 4.7 34 5-41 190-223 (468)
465 1l8q_A Chromosomal replication 96.3 0.0023 7.9E-08 47.3 3.0 23 19-41 37-59 (324)
466 3qf7_A RAD50; ABC-ATPase, ATPa 96.3 0.0024 8.1E-08 48.3 3.0 23 17-40 22-44 (365)
467 3b60_A Lipid A export ATP-bind 96.3 0.0021 7.1E-08 51.6 2.8 25 17-41 367-391 (582)
468 3ozx_A RNAse L inhibitor; ATP 96.3 0.0029 9.9E-08 50.3 3.6 24 19-42 25-48 (538)
469 2bjv_A PSP operon transcriptio 96.3 0.0048 1.6E-07 44.2 4.5 37 5-42 16-52 (265)
470 2dpy_A FLII, flagellum-specifi 96.3 0.004 1.4E-07 48.2 4.3 30 14-43 152-181 (438)
471 3ake_A Cytidylate kinase; CMP 96.2 0.003 1E-07 43.3 3.1 21 21-41 4-24 (208)
472 1ofh_A ATP-dependent HSL prote 96.2 0.0049 1.7E-07 45.0 4.4 23 19-41 50-72 (310)
473 2v1u_A Cell division control p 96.2 0.0044 1.5E-07 46.6 4.2 37 5-41 29-66 (387)
474 3qf4_B Uncharacterized ABC tra 96.2 0.0033 1.1E-07 50.7 3.7 25 17-41 379-403 (598)
475 3j16_B RLI1P; ribosome recycli 96.2 0.0036 1.2E-07 50.5 3.8 24 19-42 103-126 (608)
476 2r62_A Cell division protease 96.2 0.0018 6.1E-08 46.5 1.8 23 19-41 44-66 (268)
477 1iqp_A RFCS; clamp loader, ext 96.1 0.0055 1.9E-07 45.0 4.3 21 21-41 48-68 (327)
478 1pzn_A RAD51, DNA repair and r 96.1 0.0052 1.8E-07 46.1 4.3 27 16-42 128-154 (349)
479 3zvl_A Bifunctional polynucleo 96.1 0.0028 9.5E-08 48.8 2.8 24 18-41 257-280 (416)
480 2yl4_A ATP-binding cassette SU 96.1 0.0022 7.5E-08 51.7 2.3 25 17-41 368-392 (595)
481 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0033 1.1E-07 50.0 3.3 25 18-42 311-335 (538)
482 3ozx_A RNAse L inhibitor; ATP 96.1 0.0028 9.7E-08 50.4 2.8 22 20-41 295-316 (538)
483 2qmh_A HPR kinase/phosphorylas 96.1 0.0044 1.5E-07 42.7 3.4 24 19-42 34-57 (205)
484 1ko7_A HPR kinase/phosphatase; 96.1 0.0097 3.3E-07 43.9 5.4 25 19-43 144-168 (314)
485 3bk7_A ABC transporter ATP-bin 96.1 0.0044 1.5E-07 50.0 3.8 25 18-42 116-140 (607)
486 4a82_A Cystic fibrosis transme 96.1 0.0027 9.1E-08 51.0 2.5 25 17-41 365-389 (578)
487 3bk7_A ABC transporter ATP-bin 96.1 0.0037 1.3E-07 50.4 3.3 24 19-42 382-405 (607)
488 4b4t_H 26S protease regulatory 96.0 0.0052 1.8E-07 47.7 3.9 30 12-41 236-265 (467)
489 1p5z_B DCK, deoxycytidine kina 96.0 0.0023 7.9E-08 45.9 1.8 26 16-41 21-46 (263)
490 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.0038 1.3E-07 46.3 2.9 24 19-42 45-68 (322)
491 3qks_A DNA double-strand break 96.0 0.0042 1.5E-07 42.9 3.0 22 18-40 23-44 (203)
492 1sxj_B Activator 1 37 kDa subu 96.0 0.0083 2.8E-07 44.0 4.8 21 21-41 44-64 (323)
493 1tf7_A KAIC; homohexamer, hexa 96.0 0.0038 1.3E-07 49.5 3.0 23 17-39 37-59 (525)
494 3eie_A Vacuolar protein sortin 96.0 0.0048 1.6E-07 45.7 3.4 23 19-41 51-73 (322)
495 2qen_A Walker-type ATPase; unk 96.0 0.007 2.4E-07 44.8 4.3 23 20-42 32-54 (350)
496 4fcw_A Chaperone protein CLPB; 96.0 0.0051 1.7E-07 45.0 3.5 22 20-41 48-69 (311)
497 3bfv_A CAPA1, CAPB2, membrane 96.0 0.049 1.7E-06 39.3 8.6 66 63-134 191-257 (271)
498 3uk6_A RUVB-like 2; hexameric 96.0 0.0082 2.8E-07 45.0 4.6 22 20-41 71-92 (368)
499 3tqf_A HPR(Ser) kinase; transf 96.0 0.0056 1.9E-07 41.2 3.2 26 18-43 15-40 (181)
500 2fna_A Conserved hypothetical 95.9 0.0091 3.1E-07 44.3 4.8 33 6-41 20-52 (357)
No 1
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=2e-35 Score=205.01 Aligned_cols=178 Identities=33% Similarity=0.602 Sum_probs=144.0
Q ss_pred CchHHHHHHHHHhhcc-cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHH
Q 030008 1 MGLWEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 79 (184)
||++. .+++++. ++.++|+++|++|+|||||++++.++. .....+|.+.....+..++..+.+|||||++++..
T Consensus 3 mg~~~----~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 77 (186)
T 1ksh_A 3 MGLLT----ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS 77 (186)
T ss_dssp ------------------CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHT
T ss_pred cchhH----HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEECCEEEEEEECCCCHhHHH
Confidence 56443 3333343 688999999999999999999999877 66778888888778888889999999999999998
Q ss_pred hHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEE
Q 030008 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCF 159 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+..+++++|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+.+.........++++
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (186)
T 1ksh_A 78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQ 157 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEE
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEE
Confidence 88899999999999999999999999988888887764446799999999999987666667666665544445667899
Q ss_pred EeeecCCCCHHHHHHHHHHhhhcC
Q 030008 160 MISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
++||++|.|++++++.|.+.+.++
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 158 GCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999988764
No 2
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.2e-35 Score=202.76 Aligned_cols=177 Identities=28% Similarity=0.510 Sum_probs=144.7
Q ss_pred Cc-hHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHH
Q 030008 1 MG-LWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 79 (184)
|| ++..+.+ ++.++.++|+++|++|+|||||++++.++.+. ...+|.+.....+..++..+.+|||||++++..
T Consensus 1 m~~~~~~~~~----~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 75 (187)
T 1zj6_A 1 MGILFTRIWR----LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRS 75 (187)
T ss_dssp -CHHHHHHHH----HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETTEEEEEEECCC----CG
T ss_pred CchHHHHHHH----hcCCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEECCEEEEEEECCCCHhHHH
Confidence 67 5666665 34478999999999999999999999987776 567788877777778889999999999999988
Q ss_pred hHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEE
Q 030008 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCF 159 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+..+++++|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+..........+++++
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 155 (187)
T 1zj6_A 76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQ 155 (187)
T ss_dssp GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEE
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEE
Confidence 89999999999999999999999999999998887654345799999999999987666666666665443445567899
Q ss_pred EeeecCCCCHHHHHHHHHHhhhc
Q 030008 160 MISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
++||++|.|++++++.|.+.+..
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 156 ACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHCC
T ss_pred EccCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 3
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=1.1e-35 Score=206.78 Aligned_cols=181 Identities=31% Similarity=0.583 Sum_probs=151.5
Q ss_pred Cc-hHHHHHHHHHhhcc-cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 1 MG-LWEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 1 ~~-~~~~~~~~~~~~~~-~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
|| ++..+.+|++- +. ++.++|+++|++|+|||||++++..+.+. ...+|.+.....+..++..+.+|||||++++.
T Consensus 3 m~~~~~~~~~~l~~-f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 3 MGAWLASLKQTLGL-LPADRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLETLQYKNISFEVWDLGGQTGVR 80 (189)
T ss_dssp ---CCSCHHHHHHT-SCTTSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEEEEETTEEEEEEEECCSSSSC
T ss_pred hHHHHHHHHHHhhh-ccCCCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEEEEECCEEEEEEECCCCHhHH
Confidence 55 55666776653 44 68999999999999999999999877765 35678887777788888999999999999988
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeE
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCC 158 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
..+..+++++|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.............+++
T Consensus 81 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T 2x77_A 81 PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTI 160 (189)
T ss_dssp CCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEE
Confidence 88888899999999999999999999999888888776555689999999999998766667777776655555566789
Q ss_pred EEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 159 FMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 159 ~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
+++||++|.|++++++.|.+.+.++
T Consensus 161 ~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 161 VKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred EEccCCCccCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988765
No 4
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=2e-34 Score=200.39 Aligned_cols=169 Identities=66% Similarity=1.169 Sum_probs=146.2
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
..++.++|+++|++|+|||||+++++++.+.....+|.+.....+......+.+||+||++++...+..+++++|++++|
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 34678999999999999999999999988887888999988888888899999999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+|+++++++.....++..+.......+.|+++|+||+|+.+....+++...+.........++++++||++|.|++++++
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 177 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ 177 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHH
Confidence 99999999999998988887654446799999999999987666667777666554455667899999999999999999
Q ss_pred HHHHhhhcC
Q 030008 175 WLVKHSKSK 183 (184)
Q Consensus 175 ~i~~~l~~~ 183 (184)
.|.+.+.++
T Consensus 178 ~l~~~~~~~ 186 (188)
T 1zd9_A 178 WLIQHSKSR 186 (188)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhh
Confidence 999988765
No 5
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=9.6e-35 Score=200.98 Aligned_cols=173 Identities=32% Similarity=0.588 Sum_probs=142.5
Q ss_pred HHHhhcc--cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhcc
Q 030008 10 WLRSLFF--KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA 87 (184)
Q Consensus 10 ~~~~~~~--~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 87 (184)
+++++.. ++.++|+++|++|+|||||++++.+..+. ...+|.+.....+..++..+.+|||||++.+...+..+++.
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 83 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFEN 83 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTT
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCC
Confidence 3444444 57899999999999999999999976543 45677887777777788999999999999999999999999
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|+++++++.....++..++......+.|+++|+||+|+.+....+++.+.+.........+++++|||++|.
T Consensus 84 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (181)
T 1fzq_A 84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGE 163 (181)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCC
Confidence 99999999999999999988888887765444679999999999998766666666666544444556789999999999
Q ss_pred CHHHHHHHHHHhhhcC
Q 030008 168 NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~~ 183 (184)
|++++++.|.+.+.++
T Consensus 164 gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 164 GVQDGMNWVCKNVNAK 179 (181)
T ss_dssp THHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988665
No 6
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=2.6e-34 Score=195.37 Aligned_cols=164 Identities=30% Similarity=0.623 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
++|+++|++|+|||||++++.++.+.. ..||.+.....+...+..+.+||+||++.+...+..+++++|++++|+|+++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 79 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC
Confidence 589999999999999999999877764 5678887777777888999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 100 PDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
++++.....++..+.......+.|+++|+||+|+.+....+++...+.........++++++||++|.|++++++.|.+.
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 80 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 159 (164)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHH
Confidence 99999998888888765444679999999999998766667777776655555566789999999999999999999999
Q ss_pred hhcCC
Q 030008 180 SKSKS 184 (184)
Q Consensus 180 l~~~~ 184 (184)
+.+++
T Consensus 160 i~~~k 164 (164)
T 1r8s_A 160 LRNQK 164 (164)
T ss_dssp C----
T ss_pred HhhcC
Confidence 87764
No 7
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=1e-34 Score=202.59 Aligned_cols=173 Identities=31% Similarity=0.606 Sum_probs=143.7
Q ss_pred HHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCC
Q 030008 10 WLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVS 89 (184)
Q Consensus 10 ~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 89 (184)
++++++.++.++|+++|++|+|||||+++++++.+. ...||.+.....+..++..+.+|||||++++...+..+++++|
T Consensus 20 ~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp GGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred HHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 445566678999999999999999999999977765 3567888777778888899999999999999888999999999
Q ss_pred EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 90 AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++...+.........++++++||++|.|+
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999988888876554467999999999999876666777777766555556778999999999999
Q ss_pred HHHHHHHHHhhhcC
Q 030008 170 DSVIDWLVKHSKSK 183 (184)
Q Consensus 170 ~~l~~~i~~~l~~~ 183 (184)
+++++.|.+.+.++
T Consensus 179 ~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 179 YDGLDWLSHELSKR 192 (192)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988654
No 8
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=5.3e-34 Score=194.94 Aligned_cols=167 Identities=35% Similarity=0.665 Sum_probs=145.5
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
+++.++|+++|++|+|||||++++.++.+. ...+|.+.....+..+...+.+|||||++.+...+..+++++|++++|+
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 82 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 467899999999999999999999988775 4567888877778888999999999999999998999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
|+++++++.....++..+.......+.|+++|+||+|+.+....+++...+........+++++++||++|.|++++++.
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (171)
T 1upt_A 83 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEW 162 (171)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHH
Confidence 99999999999888888876644467999999999999877666777777665555556778999999999999999999
Q ss_pred HHHhhhcC
Q 030008 176 LVKHSKSK 183 (184)
Q Consensus 176 i~~~l~~~ 183 (184)
|.+.+.++
T Consensus 163 l~~~i~~~ 170 (171)
T 1upt_A 163 LVETLKSR 170 (171)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhhc
Confidence 99998775
No 9
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=8.3e-35 Score=201.19 Aligned_cols=179 Identities=33% Similarity=0.638 Sum_probs=145.3
Q ss_pred Cc-hHHHHHHHHHhhcc-cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 1 MG-LWEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 1 ~~-~~~~~~~~~~~~~~-~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
|| ++.++. +.++. ++.++|+++|++|+|||||++++.++.+ ....+|.+.....+..++..+.+||+||++.+.
T Consensus 1 mg~~~~~~~---~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 1 MGNIFSSMF---DKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp -CHHHHHHH---GGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEETTEEEEEEEEC----CC
T ss_pred CchHHHHHH---HHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEECCEEEEEEECCCCHhHH
Confidence 66 444443 33454 6899999999999999999999997766 456778887777777888999999999999988
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeE
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCC 158 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
..+..+++++|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+...........+++
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEE
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 88888999999999999999999999999999888776545689999999999998766667777776655455566789
Q ss_pred EEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 159 FMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 159 ~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
+++||++|.|++++++.|.+.+.++
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988654
No 10
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=6e-34 Score=198.44 Aligned_cols=176 Identities=33% Similarity=0.584 Sum_probs=136.1
Q ss_pred chHHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhH
Q 030008 2 GLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 81 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~ 81 (184)
+++..+++.+. +..+.++|+++|++|+|||||++++.++.+. ...+|.+.....+..++..+.+|||||++.+...+
T Consensus 8 ~~~~~~l~~~~--~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 84 (190)
T 1m2o_B 8 GWFRDVLASLG--LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 84 (190)
T ss_dssp ------------------CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSG
T ss_pred HHHHHHHHHhh--ccCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHH
Confidence 44444554442 3367789999999999999999999988775 56678888778888888999999999999998888
Q ss_pred HHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCc-------ccCc
Q 030008 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS-------ITDR 154 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~ 154 (184)
..+++++|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++.+...... ....
T Consensus 85 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T 1m2o_B 85 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQR 164 (190)
T ss_dssp GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSC
T ss_pred HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccc
Confidence 889999999999999999999999999888887654446799999999999987556666666554332 2234
Q ss_pred ceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 155 EVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
.+++++|||++|.|++++++.|.+.+
T Consensus 165 ~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 165 PVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred eEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 57899999999999999999998653
No 11
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=5.4e-34 Score=199.56 Aligned_cols=167 Identities=29% Similarity=0.615 Sum_probs=141.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCC-CCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSE-DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
....+|+++|++|+|||||+++|+++.+.. .+.+|.+.....+......+.+|||||++.+...+..+++++|++++|+
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 94 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVV 94 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEE
Confidence 467899999999999999999999998887 7789999888888888999999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCC-------CCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc-cCcceeEEEeeecCCC
Q 030008 96 DAADPDNLSISRSELHDLLNKPSL-------SGIPLLVLGNKIDKPGALSKQALTDEMGLKSI-TDREVCCFMISCKNST 167 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~ 167 (184)
|+++++++..+..|+..+...... ..+|+++|+||+|+.+....+++...+..... ....+++++|||++|.
T Consensus 95 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 174 (199)
T 4bas_A 95 DSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGT 174 (199)
T ss_dssp ETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTB
T ss_pred ECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCcc
Confidence 999999999998888887654221 27899999999999877677777777664433 4466789999999999
Q ss_pred CHHHHHHHHHHhhhcC
Q 030008 168 NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~~ 183 (184)
|++++++.|.+.+.++
T Consensus 175 gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 175 GVHEGFSWLQETASRQ 190 (199)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999987653
No 12
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=5.4e-35 Score=207.16 Aligned_cols=159 Identities=22% Similarity=0.362 Sum_probs=120.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+++||+++|++|+|||||+++|+.+.+...+.||++..+. .+. ...+.+.+|||+|++++..++..+++.++++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 5699999999999999999999999999899999885433 233 344789999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|++++++|..+..|+..+.... ..++|+++|+||+|+.+.. ..++..+ .....+++|++|||++|.||++
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~-----~a~~~~~~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGER-----KAKELNVMFIETSAKAGYNVKQ 165 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEEEBTTTTBSHHH
T ss_pred EeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhh-----HHHHhCCeeEEEeCCCCcCHHH
Confidence 999999999999999998876542 3578999999999986432 2222111 1222345799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+|+.|++.+.+
T Consensus 166 ~F~~i~~~i~~ 176 (216)
T 4dkx_A 166 LFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 13
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=2.6e-33 Score=196.46 Aligned_cols=164 Identities=32% Similarity=0.607 Sum_probs=129.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
..+.++|+++|++|+|||||++++.++.+. ...+|.+.....+..++..+.+|||||++.++..+..+++.+|++++|+
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 357789999999999999999999987764 4567777777778888899999999999999888888999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCc------------ccCcceeEEEeee
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS------------ITDREVCCFMISC 163 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa 163 (184)
|+++++++.....|+..+.......++|+++|+||+|+.+....++..+...... .....+++++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999998887654446799999999999976555666555544321 0124568999999
Q ss_pred cCCCCHHHHHHHHHHhh
Q 030008 164 KNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l 180 (184)
++|+|++++++.|.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998765
No 14
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=1.7e-33 Score=194.55 Aligned_cols=162 Identities=27% Similarity=0.502 Sum_probs=138.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
.+.++|+++|++|+|||||+++++++.+ ....+|.+.....+..++..+.+||+||++++...+..+++++|++++|+|
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 97 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 97 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 4679999999999999999999998877 456677777777777788999999999999999888999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++++++.....++..+.......++|+++|+||+|+.+....+++.+...........++++++||++|.|++++++.|
T Consensus 98 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 98 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence 99999999999888888765434679999999999998766667777766655445566789999999999999999999
Q ss_pred HHh
Q 030008 177 VKH 179 (184)
Q Consensus 177 ~~~ 179 (184)
.+.
T Consensus 178 ~~~ 180 (181)
T 2h17_A 178 MSR 180 (181)
T ss_dssp HTC
T ss_pred Hhh
Confidence 865
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-33 Score=193.89 Aligned_cols=167 Identities=28% Similarity=0.607 Sum_probs=139.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC-CCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG-YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
.+.++|+++|++|+|||||++++.+.. +.....+|.+.....+..++..+.+|||||++.+...+..+++++|++++|+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVI 98 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 567999999999999999999999877 4566778888887788888899999999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCC--CCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSL--SGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+++++++.....++..+...... .++|+++|+||+|+.+....+++.+...........++++++||++|.|+++++
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 178 (190)
T 2h57_A 99 DSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGV 178 (190)
T ss_dssp ETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHH
Confidence 999999999988888888765443 579999999999998766666666655433333446789999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+.|.+.+.+.
T Consensus 179 ~~l~~~i~~~ 188 (190)
T 2h57_A 179 DWLQDQIQTV 188 (190)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHh
Confidence 9999987653
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=3e-32 Score=204.41 Aligned_cols=166 Identities=31% Similarity=0.633 Sum_probs=142.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
++.++|+++|++|+|||||++++.++.+... .+|.+.....+...+..+.+|||||++.+...+..+++.+|++++|+|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D 241 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 4567999999999999999999998776533 468888888888889999999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++++++.....++..++......++|+++|+||+|+.+....+++...+.........++++++||++|.||+++++.|
T Consensus 242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999888888776555689999999999998877778888888777767778899999999999999999999
Q ss_pred HHhhhcC
Q 030008 177 VKHSKSK 183 (184)
Q Consensus 177 ~~~l~~~ 183 (184)
.+.+.++
T Consensus 322 ~~~l~~~ 328 (329)
T 3o47_A 322 SNQLRNQ 328 (329)
T ss_dssp HHHHTC-
T ss_pred HHHHHhc
Confidence 9998765
No 17
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.98 E-value=1.8e-32 Score=186.99 Aligned_cols=165 Identities=27% Similarity=0.418 Sum_probs=127.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+.++|+++|++|+|||||++++.++.+.....+|.+... ..+.. ....+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999888777777777443 33333 34689999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|+++++++.....|+..+.... ..+.|+++|+||+|+.+.....++............+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999988888887776543 3578999999999986532111111010011111234579999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+.|.+.+.++
T Consensus 161 ~~l~~~i~~k 170 (170)
T 1ek0_A 161 LGIGEKIPLK 170 (170)
T ss_dssp HHHHTTSCCC
T ss_pred HHHHHHHhhC
Confidence 9999887654
No 18
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.98 E-value=2.5e-31 Score=184.31 Aligned_cols=159 Identities=17% Similarity=0.274 Sum_probs=124.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..+.+||+++|++|+|||||+++++++.+.....+|.+.....+..++ ..+.+|||+|++.+. +++.+|++++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~ 91 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVF 91 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEE
Confidence 356899999999999999999999999888777777654444555544 677889999998877 6778999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA----LSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
|||+++++++..+..|+..+.........|+++|+||+|+.+. ...++....... ...++++++||++|.|+
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD----LKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH----TTTCEEEEEBTTTTBTH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH----cCCCeEEEecCCCCCCH
Confidence 9999999999999888888876654467899999999998421 122222211111 11257999999999999
Q ss_pred HHHHHHHHHhhhcC
Q 030008 170 DSVIDWLVKHSKSK 183 (184)
Q Consensus 170 ~~l~~~i~~~l~~~ 183 (184)
+++|+.|.+.+.++
T Consensus 168 ~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 168 ERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 19
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=8.7e-31 Score=206.55 Aligned_cols=166 Identities=33% Similarity=0.640 Sum_probs=147.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEe
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVD 96 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 96 (184)
.+.++|+++|.+|+|||||+++++++.+. ...+|++.....+..++..+.+|||||++.+...+..+++++|++++|+|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D 398 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 46799999999999999999999988854 56789999999999889999999999999999999999999999999999
Q ss_pred CCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHH
Q 030008 97 AADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWL 176 (184)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 176 (184)
+++++++.....++..++......++|+++|+||+|+.+....+++...+.........+++++|||++|+|++++++.|
T Consensus 399 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 478 (497)
T 3lvq_E 399 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 478 (497)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999988776555679999999999998777777788777776666677889999999999999999999
Q ss_pred HHhhhcC
Q 030008 177 VKHSKSK 183 (184)
Q Consensus 177 ~~~l~~~ 183 (184)
.+.+.++
T Consensus 479 ~~~~~~~ 485 (497)
T 3lvq_E 479 TSNYKSK 485 (497)
T ss_dssp HHHCC--
T ss_pred HHHHHhc
Confidence 9988764
No 20
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=1.7e-31 Score=181.77 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=104.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-E--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVV 95 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 95 (184)
.++|+++|++|+|||||++++.+.... ...++.+.... . +......+.+||+||++.+......+++.+|++++|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 579999999999999999999865543 22333333222 2 2334467899999999999999999999999999999
Q ss_pred eCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 96 DAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
|+++++++..+..|+..+.......++|+++|+||+|+.+.... .+....+ ....+++++++||++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC----AVVFDCKFIETSAALHHNVQALFE 156 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHH----HHHTTCEEEECBGGGTBSHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHH----HHHhCCcEEEeccCCCCCHHHHHH
Confidence 99999999999999888877655578999999999999753221 1111111 112335799999999999999999
Q ss_pred HHHHhhhcCC
Q 030008 175 WLVKHSKSKS 184 (184)
Q Consensus 175 ~i~~~l~~~~ 184 (184)
.|.+.+.+++
T Consensus 157 ~l~~~~~~~r 166 (166)
T 3q72_A 157 GVVRQIRLRR 166 (166)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999987653
No 21
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=1.1e-31 Score=185.58 Aligned_cols=162 Identities=19% Similarity=0.254 Sum_probs=128.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||++++.++.+.....+|.+.... ....++ ..+.+||+||++.+...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999998887777777774442 233333 557789999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeec-CCCCHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCK-NSTNID 170 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v~ 170 (184)
|+|+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++++||+ ++.|++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~~v~ 170 (183)
T 3kkq_A 96 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA-----TKYNIPYIETSAKDPPLNVD 170 (183)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH-----HHHTCCEEEEBCSSSCBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHH-----HHhCCeEEEeccCCCCCCHH
Confidence 99999999999988888877654444679999999999986522 222221111 1123579999999 999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++|+.|.+.+.++
T Consensus 171 ~l~~~l~~~i~~q 183 (183)
T 3kkq_A 171 KTFHDLVRVIRQQ 183 (183)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999988754
No 22
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=1.2e-31 Score=182.41 Aligned_cols=161 Identities=21% Similarity=0.318 Sum_probs=125.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.++|+++|++|+|||||++++.++.+.....+|.+.... .+... ...+.+||+||++++...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 5789999999999999999999988887776677664433 23333 36899999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++.....|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHHH
Confidence 9999999998888888777665444579999999999986432 222222221 122357999999999999999
Q ss_pred HHHHHHhhhcC
Q 030008 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~l~~~ 183 (184)
++.|.+.+.++
T Consensus 158 ~~~l~~~i~~~ 168 (168)
T 1u8z_A 158 FFDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhC
Confidence 99999988653
No 23
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=1.1e-31 Score=182.67 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=126.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.++|+++|++|+|||||++++.++.+.....+|.+..... +. .....+.+||+||++.+...+..+++++|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999988877777777754432 22 3457899999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++..+..|+..+.......++|+++|+||+|+.+... .++...... .....+++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH----HccCCcEEEecCCCCCCHHHH
Confidence 99999988888888877766543345799999999999965322 222222111 112457999999999999999
Q ss_pred HHHHHHhhh
Q 030008 173 IDWLVKHSK 181 (184)
Q Consensus 173 ~~~i~~~l~ 181 (184)
++.|.+.+.
T Consensus 158 ~~~l~~~i~ 166 (167)
T 1c1y_A 158 FYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998875
No 24
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=2.9e-31 Score=184.76 Aligned_cols=162 Identities=22% Similarity=0.366 Sum_probs=129.8
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE---EEEeC-----------cEEEEEEecCCchhhHHhH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKG-----------NVTIKLWDLGGQPRFRSMW 81 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~-----------~~~~~~~D~~G~~~~~~~~ 81 (184)
.+..++|+++|++|+|||||++++.++.+.....+|.+.... .+... ...+.+||+||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 356799999999999999999999998887777888876544 33333 4689999999999999999
Q ss_pred HHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEE
Q 030008 82 ERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCF 159 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
..+++++|++++|+|++++.++..+..|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~ 162 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA-----EKYGIPYF 162 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCCEE
Confidence 99999999999999999999998888888777655444579999999999996522 222222111 11234799
Q ss_pred EeeecCCCCHHHHHHHHHHhhhc
Q 030008 160 MISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
++||+++.|++++++.|.+.+.+
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 25
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=6.8e-31 Score=182.21 Aligned_cols=162 Identities=17% Similarity=0.310 Sum_probs=125.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
++.++|+++|++|+|||||++++.++.+.....+|..... ..+..++ ..+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4679999999999999999999998887766666665333 3333333 558889999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|+.+++++..+..|+..+.......+.|+++|+||+|+.+.....+....+.. ..+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLAR----SYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHH----HHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHH----HcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999998888887776555568999999999999754332222222211 123479999999999999999
Q ss_pred HHHHHhhhc
Q 030008 174 DWLVKHSKS 182 (184)
Q Consensus 174 ~~i~~~l~~ 182 (184)
+.|.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 26
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=1.2e-31 Score=182.25 Aligned_cols=160 Identities=17% Similarity=0.302 Sum_probs=126.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.++|+++|++|+|||||++++.++.+.....+|.+... ..+...+ ..+.+||+||++.+...+..+++.++++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 468999999999999999999998887766666665332 3333333 5699999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+.+++++..+..++..+.......+.|+++|+||+|+.+... ..+... + ....+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~l 156 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA-L----AEEWGCPFMETSAKSKTMVDEL 156 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTSCEEEECTTCHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH-H----HHHhCCCEEEecCCCCcCHHHH
Confidence 99999999988888888776655556799999999999864322 221111 1 1112347999999999999999
Q ss_pred HHHHHHhhhc
Q 030008 173 IDWLVKHSKS 182 (184)
Q Consensus 173 ~~~i~~~l~~ 182 (184)
++.|.+.+.+
T Consensus 157 ~~~l~~~~~~ 166 (167)
T 1kao_A 157 FAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 27
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=4.7e-31 Score=179.89 Aligned_cols=160 Identities=24% Similarity=0.342 Sum_probs=127.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+.++|+++|++|+|||||+++++++.+.....++.+.... .+.. ....+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999988887777777775432 2333 3578999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++.....|+..+.... ....|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999998988888877765542 2578999999999986432 222222211 1234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 158 ~l~~~i~~~~~~ 169 (170)
T 1r2q_A 158 EIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHTSCC
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
No 28
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=6.7e-32 Score=189.52 Aligned_cols=163 Identities=18% Similarity=0.251 Sum_probs=126.5
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE---EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..+.++|+++|++|+|||||++++.++.+...+.+|.+..... +......+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4578999999999999999999999998887777777754432 2345688999999999999888889999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.......++|+++|+||+|+.+... ..+.. .+ ....+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~~~~v~ 175 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGK-KL----AESWGATFMESSARENQLTQ 175 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEECCTTCHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHH-HH----HHHhCCeEEEEeCCCCCCHH
Confidence 9999999999999999998887765556799999999999864322 11111 11 11234579999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++|+.|.+.+.++
T Consensus 176 ~l~~~l~~~i~~~ 188 (201)
T 3oes_A 176 GIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987654
No 29
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.9e-30 Score=180.88 Aligned_cols=162 Identities=20% Similarity=0.359 Sum_probs=129.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+.++|+++|++|+|||||++++++..+.....+|.+.... .+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45799999999999999999999998887777777764432 3333 3478999999999999989999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|++++.++..+..|+..+........+|+++|+||+|+.+... .++..... ...+++++++||+++.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHHH
Confidence 9999999999988888888887665556799999999999954322 22222211 12345799999999999999
Q ss_pred HHHHHHHhhhcC
Q 030008 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~l~~~ 183 (184)
+++.|.+.+.+.
T Consensus 168 l~~~l~~~~~~~ 179 (195)
T 1x3s_A 168 AFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhh
Confidence 999999887653
No 30
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=6.2e-31 Score=184.70 Aligned_cols=161 Identities=24% Similarity=0.390 Sum_probs=121.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+.. ...+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 456999999999999999999999988877777777633 34454444 68999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcce-eEEEeeecCCCCH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREV-CCFMISCKNSTNI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 169 (184)
+|+|+++++++..+..|+..+.... ..++|+++|+||+|+.+. ...++..+.. ...++ +++++||++|.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLA-----EHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHH-----HHcCCCEEEEEeCCCCCCH
Confidence 9999999999988888887765433 356899999999999652 2222222221 11234 7999999999999
Q ss_pred HHHHHHHHHhhhcC
Q 030008 170 DSVIDWLVKHSKSK 183 (184)
Q Consensus 170 ~~l~~~i~~~l~~~ 183 (184)
+++++.|.+.+.++
T Consensus 181 ~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 181 EEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
No 31
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=1.3e-31 Score=184.89 Aligned_cols=162 Identities=16% Similarity=0.251 Sum_probs=127.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||++++.++.+.....+|.+.... .+..++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 46799999999999999999999988887777777775543 233444 678999999999998888889999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+.......++|+++|+||+|+.+... .++..... ...+++++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHhCCcEEEEecCCCCCHHH
Confidence 999999999999988888876665556799999999999864322 22222111 12245799999999999999
Q ss_pred HHHHHHHhhhcC
Q 030008 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~l~~~ 183 (184)
+|+.|.+.+.++
T Consensus 159 l~~~l~~~~~~~ 170 (181)
T 3t5g_A 159 VFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 32
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=4.1e-31 Score=182.01 Aligned_cols=162 Identities=20% Similarity=0.305 Sum_probs=129.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..+.++|+++|++|+|||||++++.++.+.....+|.+.... .+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 356799999999999999999999998887777777775443 344443 67899999999999888999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.......++|+++|+||+|+.+... .++.. .+ ....+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~~~gv~ 160 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS-AF----GASHHVAYFEASAKLRLNVD 160 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH-HH----HHHTTCEEEECBTTTTBSHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH-HH----HHHcCCeEEEecCCCCCCHH
Confidence 9999999999998888888775544446799999999999965322 22211 11 11234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 161 ~l~~~l~~~~~~ 172 (181)
T 2fn4_A 161 EAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 33
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-30 Score=182.14 Aligned_cols=161 Identities=22% Similarity=0.346 Sum_probs=127.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE--EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK--VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+.++|+++|++|+|||||+++++++.+.....+|.+..... +. .....+.+||+||++++...+..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 567999999999999999999999988877777777755433 22 34578999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..++|+++|+||+|+.+. ...++..+.. ...+++++++||++|.|++
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETSAKNAINIE 174 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECBTTTTBSHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHH
Confidence 9999999999988888877765432 356899999999999642 2222322222 1234679999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++++.|.+.+.+.
T Consensus 175 ~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 175 ELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987653
No 34
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=5.2e-30 Score=176.05 Aligned_cols=163 Identities=21% Similarity=0.380 Sum_probs=124.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+.++|+++|++|+|||||++++.++.+.....+|.+... ..+..++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 4679999999999999999999999888777777777543 3344444 68999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcC---CCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 93 YVVDAADPDNLSISRSELHDLLNK---PSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+|+|+++++++..+..|+..+... ....++|+++|+||+|+.+... .++...... ....++++++||++|.|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDATN 160 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCCC
Confidence 999999998888887776665432 2225689999999999974322 222222211 12345799999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 030008 169 IDSVIDWLVKHSKSK 183 (184)
Q Consensus 169 v~~l~~~i~~~l~~~ 183 (184)
++++++.|.+.+.++
T Consensus 161 i~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 161 VAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987654
No 35
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=9.9e-31 Score=181.81 Aligned_cols=161 Identities=27% Similarity=0.446 Sum_probs=124.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhH-HhHHHHhccCCEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFR-SMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~-~~~~~~~~~~~~i 91 (184)
.+.++|+++|++|+|||||+++++++.+.....+|.+.. ...+..++ ..+.+||+||++++. ..+..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 467999999999999999999999888877777776643 33344443 689999999999988 7888999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCC---
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNS--- 166 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--- 166 (184)
++|+|+++++++..+..|+..+.......+.|+++|+||+|+.+.. ..++. ..+. ...+++++++||+++
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~~~Sa~~~~~~ 172 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLA-QKFA----DTHSMPLFETSAKNPNDN 172 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHH-HHHH----HHTTCCEEECCSSSGGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHH-HHHH----HHcCCEEEEEeCCcCCcc
Confidence 9999999999998888888877665545679999999999996432 22221 1111 123357999999999
Q ss_pred CCHHHHHHHHHHhhhc
Q 030008 167 TNIDSVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~l~~ 182 (184)
.|++++|+.|.+.+.+
T Consensus 173 ~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 173 DHVEAIFMTLAHKLKS 188 (189)
T ss_dssp SCHHHHHHHHC-----
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999887754
No 36
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=183.74 Aligned_cols=162 Identities=20% Similarity=0.295 Sum_probs=129.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..+.++|+++|++|+|||||++++.++.+...+.+|.+... ..+..++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 45679999999999999999999998888777777766443 3344443 58999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+........+|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 165 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVD 165 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHhCCeEEEEeCCCCCCHH
Confidence 999999999999988888877765545679999999999996532 222222221 1223579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 166 ~l~~~l~~~i~~ 177 (206)
T 2bov_A 166 KVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 37
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=5.1e-31 Score=183.98 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=124.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+..+.. +.. ....+.+|||||++.+...+..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 467999999999999999999999998877778888755443 333 34667999999999999999999999999999
Q ss_pred EEeCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC----CHHHHHhHhCcCcccCccee-EEEeeecCCC
Q 030008 94 VVDAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGAL----SKQALTDEMGLKSITDREVC-CFMISCKNST 167 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 167 (184)
|+|+++++++..+ ..|+..+... ..++|+++|+||+|+.+.. ..++..... ...+++ ++++||++|.
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 173 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC-----QKLGCVAYIEASSVAKI 173 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH-----HHHTCSCEEECBTTTTB
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHH-----HhcCCCEEEEeecCCCC
Confidence 9999999999887 4444444322 2468999999999997431 122221111 112234 9999999999
Q ss_pred CHHHHHHHHHHhhhcC
Q 030008 168 NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~~ 183 (184)
|++++++.|.+.+.++
T Consensus 174 gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 174 GLNEVFEKSVDCIFSN 189 (194)
T ss_dssp SHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988654
No 38
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=8.3e-31 Score=178.78 Aligned_cols=160 Identities=22% Similarity=0.337 Sum_probs=126.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+.++|+++|++|+|||||++++.++.+.....++.+.... .+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 46799999999999999999999998887777777775433 2333 3478999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++.....|+..+... .....|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA-----DSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHH
Confidence 999999998888887777766543 235789999999999965322 22221111 1224579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 39
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=4.7e-31 Score=180.04 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=113.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--ccceeEEEEEeC--cEEEEEEecCCchhhHH-hHHHHhccCCEEEE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTKG--NVTIKLWDLGGQPRFRS-MWERYCRAVSAIVY 93 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~--~~~~~~~D~~G~~~~~~-~~~~~~~~~~~ii~ 93 (184)
.++|+++|++|+|||||++++.+........+ +.......+..+ ...+.+||+||++.+.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999986655433332 333333444444 46788999999998865 66677888999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++.... ....+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL-----AGTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHH-----HHHcCCcEEEecCccCCCHHH
Confidence 99999999999999998888766555579999999999986422 22222111 112345799999999999999
Q ss_pred HHHHHHHhhhcCC
Q 030008 172 VIDWLVKHSKSKS 184 (184)
Q Consensus 172 l~~~i~~~l~~~~ 184 (184)
+++.|.+.+..++
T Consensus 157 l~~~l~~~i~~~r 169 (169)
T 3q85_A 157 LFEGAVRQIRLRR 169 (169)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987654
No 40
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.6e-31 Score=180.26 Aligned_cols=162 Identities=20% Similarity=0.312 Sum_probs=123.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.++|+++|++|+|||||++++.++.+.....+|.+..... +.. ....+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 57899999999999999999999888776677777654433 222 336799999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKP-SLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+++++++.....++..+.... ...+.|+++|+||+|+.+.... .+....+ ....+++++++||++|.|++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~l 157 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEAL----ARTWKCAFMETSAKLNHNVKEL 157 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHH----HHHHTCEEEECBTTTTBSHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHH----HHHhCCeEEEecCCCCcCHHHH
Confidence 99999988887777766554321 2246899999999998643221 1111111 1122457999999999999999
Q ss_pred HHHHHHhhhcC
Q 030008 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~l~~~ 183 (184)
++.|.+.+.++
T Consensus 158 ~~~l~~~~~~~ 168 (172)
T 2erx_A 158 FQELLNLEKRR 168 (172)
T ss_dssp HHHHHHTCCSS
T ss_pred HHHHHHHHhhh
Confidence 99999988765
No 41
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=7e-31 Score=186.28 Aligned_cols=161 Identities=21% Similarity=0.373 Sum_probs=127.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeC------------cEEEEEEecCCchhhHHhHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKG------------NVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~------------~~~~~~~D~~G~~~~~~~~~ 82 (184)
++.++|+++|++|+|||||+++|+++.+...+.+|.+..+. .+... ...+.+|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 56799999999999999999999988887666677664432 22222 57899999999999999999
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEE
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
.+++.+|++++|+|+++++++..+..|+..+........+|+++|+||+|+.+... .++..... ...++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCcEEE
Confidence 99999999999999999999988888887776554446799999999999965322 22222111 112357999
Q ss_pred eeecCCCCHHHHHHHHHHhhhc
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+||+++.|++++++.|.+.+.+
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 42
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.97 E-value=2e-30 Score=181.00 Aligned_cols=161 Identities=24% Similarity=0.394 Sum_probs=127.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..++|+++|++|+|||||++++.++.+.....++.+... ..+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 4568999999999999999999999888777777776443 3444444 68999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--HHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK--QALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..++|+++|+||+|+.+.... .+.... ....+++++++||++|.|++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEF-----ADSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCCEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHH-----HHHcCCcEEEEeCCCCCCHH
Confidence 9999999999888888877665432 257899999999999754321 111111 11223479999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++|+.|.+.+.++
T Consensus 168 ~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 168 QSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 43
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=2.1e-31 Score=186.68 Aligned_cols=167 Identities=20% Similarity=0.362 Sum_probs=116.0
Q ss_pred HhhcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhcc
Q 030008 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRA 87 (184)
Q Consensus 12 ~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ 87 (184)
++...++.++|+++|++|+|||||+++++++.+.....+|.+... ..+..+ ...+.+||+||++.+...+..+++.
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 333446789999999999999999999998887766667666332 333333 4679999999999999999999999
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC-------CCHHHHHhHhCcCcccCcceeEEE
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA-------LSKQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+|++++|+|+++++++..+..|+..+... ...++|+++|+||+|+.+. ....+....+ ....++++++
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~ 175 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL----AMTYGALFCE 175 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH----HHHHTCEEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHH----HHHcCCeEEE
Confidence 99999999999999888888777665432 2246899999999998521 1111111111 1123457999
Q ss_pred eeecCCCCHHHHHHHHHHhhhcC
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
+||++|.|++++++.|.+.+.++
T Consensus 176 ~SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 176 TSAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHHHTC-
T ss_pred eeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999988764
No 44
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.97 E-value=1.3e-30 Score=179.77 Aligned_cols=161 Identities=21% Similarity=0.315 Sum_probs=126.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+.++|+++|++|+|||||+++++++.+.....+|.+... ..+... ...+.+||+||++.+...+..+++.+|+++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 5679999999999999999999999888777777766433 333333 468999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++.....|+..+.... ....|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 90 IVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTATNVK 163 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHH
Confidence 9999999998888888887776543 25789999999999964322 22222221 1234579999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++++.|.+.+.+.
T Consensus 164 ~l~~~l~~~~~~~ 176 (181)
T 2efe_B 164 EIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887653
No 45
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=6e-31 Score=182.08 Aligned_cols=161 Identities=21% Similarity=0.307 Sum_probs=128.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||++++.+..+.....+|.+.... .+...+ ..+.+||+||++.+...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 46799999999999999999999988887776677664433 233333 679999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+.+++++..+..|+..+........+|+++|+||+|+.+.. ..++..... ...+++++++||+++.|+++
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHH
Confidence 99999999988888888777665544579999999999986532 222222222 12345799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+++.|.+.+.+
T Consensus 171 l~~~l~~~i~~ 181 (187)
T 2a9k_A 171 VFFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 46
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=1.3e-30 Score=179.28 Aligned_cols=160 Identities=20% Similarity=0.300 Sum_probs=125.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||++++.++.+.....+|.+... ..+.. ....+.+||+||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 5679999999999999999999999888766667766433 33333 3468999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++..+..|+..+.... ..++|+++|+||+|+.+.. ..++..+.. ...+++++++||++|.|++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 166 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGENVE 166 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999988888888777665432 2478999999999996432 222222221 1234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 167 ~l~~~l~~~i~~ 178 (179)
T 1z0f_A 167 DAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
No 47
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=5.3e-30 Score=173.81 Aligned_cols=162 Identities=15% Similarity=0.293 Sum_probs=125.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.++|+++|++|+|||||++++.++.+.....+|.+... ..+... ...+.+||+||++++...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 358999999999999999999998887766666666433 233333 46789999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
+|+.+++++..+..|+..+.......+.|+++|+||+|+.+.....+....+. ...+++++++||++|.|++++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA----RSYGIPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH----HHHTCCEEEECTTTCTTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHH
Confidence 99999988888887777765544345799999999999876332222222211 11234799999999999999999
Q ss_pred HHHHhhhcC
Q 030008 175 WLVKHSKSK 183 (184)
Q Consensus 175 ~i~~~l~~~ 183 (184)
.|.+.+.++
T Consensus 158 ~l~~~~~~~ 166 (166)
T 2ce2_X 158 TLVREIRQH 166 (166)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhC
Confidence 999988653
No 48
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=3.4e-31 Score=180.39 Aligned_cols=160 Identities=22% Similarity=0.395 Sum_probs=125.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..++|+++|++|+|||||++++.++.+...+.+|.+... ..+... ...+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999999888777777776433 334433 468999999999999888899999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+.. ..++..... ...+++++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHH
Confidence 9999999988888887777665433 468999999999986532 222222211 1223579999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++++.|.+.+.++
T Consensus 156 ~l~~~l~~~~~~~ 168 (168)
T 1z2a_A 156 EVFKYLAEKHLQK 168 (168)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhC
Confidence 9999999887653
No 49
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1e-30 Score=183.57 Aligned_cols=160 Identities=24% Similarity=0.367 Sum_probs=126.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||+++++++.+.....+|.+... ..+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4569999999999999999999999888877778877543 3344443 68999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ....|+++|+||+|+.+... .++... + ....+++++++||++|.|++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEE-F----SEAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHH-H----HHHHTCCEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-H----HHHcCCEEEEEeCCCCCCHH
Confidence 9999999999988888877665432 25689999999999964322 222211 1 11234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 178 ~l~~~l~~~i~~ 189 (201)
T 2ew1_A 178 KLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 50
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.97 E-value=2.4e-30 Score=176.51 Aligned_cols=161 Identities=24% Similarity=0.394 Sum_probs=120.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
..++|+++|++|+|||||++++.++.+.....+|.+... ..+..+ ...+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999888777777766433 334433 4689999999999998888899999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
|+|+++++++..+..|+..+.... ....|+++|+||+|+.+.....+....+. ...+++++++||++|.|+++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~ 156 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNEIF 156 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHH----HHHTCCEEECBTTTTBSHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHH----HHcCCeEEEEECCCCCCHHHHH
Confidence 999999988888888777665432 24789999999999954322222111111 1123579999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+.|.+.+.++
T Consensus 157 ~~l~~~~~~~ 166 (170)
T 1g16_A 157 FTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 51
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=6.5e-31 Score=181.04 Aligned_cols=162 Identities=23% Similarity=0.420 Sum_probs=118.2
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCC-CCCCCccceeEEE--EEeC--cEEEEEEecCCchhhHHhHHHHhccCCE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYS-EDMIPTVGFNMRK--VTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSA 90 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~-~~~~~t~~~~~~~--~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 90 (184)
.++.++|+++|++|+|||||++++.++.+. ....+|.+..+.. +..+ ...+.+||+||++.+...+..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 357899999999999999999999988874 3556666654432 3333 3689999999999999989999999999
Q ss_pred EEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|+++++++..+..|+..+..... .+.|+++|+||+|+.+... .++..... ...+++++++||++|.|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLA-----KEYGLPFMETSAKTGLN 160 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEeCCCCCC
Confidence 9999999999888888877776654322 5789999999999975322 22221111 11235799999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 030008 169 IDSVIDWLVKHSKSK 183 (184)
Q Consensus 169 v~~l~~~i~~~l~~~ 183 (184)
++++++.|.+.+.++
T Consensus 161 i~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 161 VDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
No 52
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.1e-31 Score=184.28 Aligned_cols=162 Identities=21% Similarity=0.215 Sum_probs=125.9
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..+.++|+++|++|+|||||+++++++.+...+.+|.+..+.. +..+ ...+.+||+||++. ...+..+++.+|+++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 3578999999999999999999999988877777777755432 3333 47799999999988 777888899999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCC-CH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNST-NI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v 169 (184)
+|+|+++++++..+..|+..+.......++|+++|+||+|+.+.. ..++..... ...+++++++||++|. |+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA-----TELACAFYECSACTGEGNI 178 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSEEEECCTTTCTTCH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH-----HHhCCeEEEECCCcCCcCH
Confidence 999999999998888877776654344579999999999996532 222221111 1124579999999999 99
Q ss_pred HHHHHHHHHhhhcC
Q 030008 170 DSVIDWLVKHSKSK 183 (184)
Q Consensus 170 ~~l~~~i~~~l~~~ 183 (184)
+++++.|.+.+.++
T Consensus 179 ~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 179 TEIFYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887653
No 53
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=1.9e-30 Score=179.72 Aligned_cols=160 Identities=20% Similarity=0.314 Sum_probs=126.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||++++.++.+.....+|.+... ..+..++ ..+.+||+||++.+...+..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 5679999999999999999999999888777777776443 3344444 68999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..++|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA-----QENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHH
Confidence 9999999998888888876654332 2578999999999996422 222222111 1234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 54
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=180.63 Aligned_cols=160 Identities=22% Similarity=0.350 Sum_probs=126.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||++++++..+.....+|.+.... .+.. ....+.+|||||++++...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45699999999999999999999998887777777764433 2332 3478999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++..+..|+..+.... ....|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999988888888887776542 3578999999999996532 222222111 1234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (193)
T 2oil_A 177 LAFETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 55
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.1e-31 Score=184.71 Aligned_cols=161 Identities=20% Similarity=0.353 Sum_probs=126.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EE--EeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KV--TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..+||+++|++|+|||||+++++++.+.....+|.+.... .+ ......+.+||+||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 46699999999999999999999988877776666663332 23 345688999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+... .++... + ....+++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQL-L----AEQLGFDFFEASAKENISVR 174 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHH-H----HHHcCCeEEEEECCCCCCHH
Confidence 999999999998888877776543 235799999999999864322 221111 1 11224579999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++++.|.+.+.++
T Consensus 175 ~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 175 QAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887653
No 56
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.97 E-value=3e-31 Score=182.46 Aligned_cols=162 Identities=19% Similarity=0.308 Sum_probs=124.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccc--eeEEEEEeCc---EEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGN---VTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+ .....+...+ ..+.+||+||++.+...+..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4679999999999999999999998877655556665 4445555544 7899999999999999999999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCC-CCCCc-EEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPS-LSGIP-LLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++|+|+++++++..+..|+..+..... ....| +++|+||+|+.+.. ..++..... ...+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC-----QENGFSSHFVSAKTGD 158 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCC
Confidence 999999999888888777666543210 01345 89999999996422 222222111 1223579999999999
Q ss_pred CHHHHHHHHHHhhhcC
Q 030008 168 NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~~ 183 (184)
|++++++.|.+.+.++
T Consensus 159 gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGI 174 (178)
T ss_dssp THHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988764
No 57
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=2.8e-30 Score=181.38 Aligned_cols=161 Identities=19% Similarity=0.357 Sum_probs=126.5
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
.+..++|+++|++|+|||||++++++..+.....+|.+.... .+... ...+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 356799999999999999999999998887777777775443 33333 46899999999999999999999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++++++..+..|+..+.... ....|+++|+||+|+.+... .++..... ...+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi 158 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLGFEFFEASAKDNINV 158 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHCCCeEEEEECCCCCCH
Confidence 99999999998888888877765432 34689999999999965322 22211111 112347999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030008 170 DSVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~l~~ 182 (184)
+++++.|.+.+.+
T Consensus 159 ~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 159 KQTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 58
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=178.04 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=111.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccce--eEEEEEeC--cEEEEEEecCCchh--hHHhHHHHhccCCE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGF--NMRKVTKG--NVTIKLWDLGGQPR--FRSMWERYCRAVSA 90 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~--~~~~~~~~--~~~~~~~D~~G~~~--~~~~~~~~~~~~~~ 90 (184)
.+.++|+++|++|+|||||++++.+..+.... ++.+. ....+..+ ...+.+||+||++. +......+++.+++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 46799999999999999999999987765332 23332 23334433 35789999999887 45666778889999
Q ss_pred EEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|+|+++++++..+..|+..+.......++|+++|+||+|+.+... .++... + ....+++++++||++|.|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~g~g 155 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA-C----AVVFDCKFIETSATLQHN 155 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-H----HHHHTSEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-H----HHHcCCeEEEEecCCCCC
Confidence 999999999999998888887776554445799999999999975322 222111 1 112235799999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030008 169 IDSVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~l~~ 182 (184)
++++++.|.+.+.+
T Consensus 156 i~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 156 VAELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 59
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=1.6e-30 Score=178.79 Aligned_cols=160 Identities=22% Similarity=0.377 Sum_probs=125.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+.++|+++|++|+|||||+++++++.+.....+|.+... ..+..++ ..+.+|||||++.+...+..+++++|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 569999999999999999999998888777777776433 3344443 689999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
|+|+++++++.....|+..+.... ..++|+++|+||+|+.+... .++..... ...+++++++||++|.|+++
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYNVKQ 166 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHH
Confidence 999999988888888877765432 24689999999999864322 22222111 12245799999999999999
Q ss_pred HHHHHHHhhhcC
Q 030008 172 VIDWLVKHSKSK 183 (184)
Q Consensus 172 l~~~i~~~l~~~ 183 (184)
+++.|.+.+.++
T Consensus 167 l~~~l~~~~~~~ 178 (179)
T 2y8e_A 167 LFRRVAAALPGM 178 (179)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHhhc
Confidence 999999988765
No 60
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=9.4e-31 Score=180.23 Aligned_cols=159 Identities=23% Similarity=0.407 Sum_probs=124.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+.++|+++|++|+|||||++++.++.+.....++.+... ..+...+ ..+.+||+||++.+...+..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 5679999999999999999999998887777677766443 4455555 78999999999999888889999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ...|+++|+||+|+.+... ..+.... ....+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 159 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKF-----AGQMGIQLFETSAKENVNVE 159 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCCEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHH-----HHHcCCeEEEEECCCCCCHH
Confidence 9999999999998888887775532 4789999999999865322 1211111 11223479999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 160 ~l~~~l~~~~~~ 171 (181)
T 3tw8_B 160 EMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 61
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=1.5e-29 Score=177.35 Aligned_cols=158 Identities=22% Similarity=0.367 Sum_probs=125.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEeCc-------------------------------
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTKGN------------------------------- 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~~~------------------------------- 63 (184)
++.++|+++|++|+|||||+++|++..+.....+|.+.... .+...+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 46799999999999999999999998887777777764432 233322
Q ss_pred --------EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 64 --------VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 64 --------~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
..+.+||+||++.+...+..+++.+|++++|+|++++.++..+..|+..+.... ..|+++|+||+|..+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCccc
Confidence 789999999999999999999999999999999999998888888887776542 399999999999432
Q ss_pred C-CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 136 A-LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 136 ~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
. ...++..+... ..+++++++||++|.|++++++.|.+.+.+
T Consensus 162 ~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 162 FQVDILEVQKYAQ-----DNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CCSCHHHHHHHHH-----HTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHH-----HcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 2 22233322221 134579999999999999999999988764
No 62
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=176.81 Aligned_cols=162 Identities=23% Similarity=0.337 Sum_probs=120.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...++|+++|++|+|||||+++++++.+.....+|.+... ..+..++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999998887766667766433 3344433 68999999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+... .++..... . .....+++++||++|.|++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-~---~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFA-Q---QITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-H---TSTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH-H---hcCCCeEEEEeCCCCCCHH
Confidence 999999998888887776655432 235799999999999964322 22222111 1 1124579999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++++.|.+.+.++
T Consensus 179 ~l~~~l~~~i~~~ 191 (192)
T 2il1_A 179 EIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 63
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=7.8e-31 Score=182.33 Aligned_cols=161 Identities=22% Similarity=0.359 Sum_probs=125.9
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
.+..++|+++|++|+|||||+++++++.+.....+|.+.... .+.. ....+.+||+||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 345699999999999999999999998887777777764433 3333 346899999999999988888999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... .++..... ...+++++++||++|.|+
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLA-----DDLGFEFFEASAKENINV 172 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCH
Confidence 99999999988888888777765432 34789999999999965322 22211111 112347999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030008 170 DSVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~l~~ 182 (184)
+++++.|.+.+.+
T Consensus 173 ~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 173 KQVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 64
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=5.8e-30 Score=178.97 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=119.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeC--cEEEEEEecCCchhhHH-hHHHHhccCCEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKG--NVTIKLWDLGGQPRFRS-MWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~--~~~~~~~D~~G~~~~~~-~~~~~~~~~~~i 91 (184)
.+.++|+++|++|||||||+++|++.... ..+..+.......+..+ ...+.+||++|++.+.. +...+++.+|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 46799999999999999999999743332 22222333333444433 46788999999987754 677788999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
++|+|+++++++..+..|+..+........+|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+
T Consensus 101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHNT 175 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH-----HHhCCEEEEEcCCCCCCH
Confidence 9999999999999998888877654433579999999999996432 222222111 112357999999999999
Q ss_pred HHHHHHHHHhhhcC
Q 030008 170 DSVIDWLVKHSKSK 183 (184)
Q Consensus 170 ~~l~~~i~~~l~~~ 183 (184)
+++|+.|.+.+.++
T Consensus 176 ~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 176 RELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988654
No 65
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=2.1e-30 Score=180.45 Aligned_cols=160 Identities=20% Similarity=0.285 Sum_probs=122.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+.++|+++|++|+|||||+++++++.+.....+|.+.. ...+..++ ..+.+||+||++.+...+..+++++|+++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 457999999999999999999999988876666666533 33444443 68999999999999888899999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 172 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSAKTACNVE 172 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999988888877765432 2578999999999996422 222222111 1234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 173 ~l~~~l~~~i~~ 184 (191)
T 2a5j_A 173 EAFINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 66
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=6e-31 Score=179.58 Aligned_cols=160 Identities=25% Similarity=0.327 Sum_probs=119.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||++++.++.+.....+|.+.... .+.. ....+.+||+||++.+...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 56799999999999999999999988887777777775433 3333 3468999999999999888888899999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ...+|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 157 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGIE 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHH
Confidence 9999999988888887776654321 2468999999999996532 222222211 1223579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 158 ~l~~~l~~~~~~ 169 (170)
T 1z08_A 158 ELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
No 67
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=4.4e-30 Score=176.73 Aligned_cols=156 Identities=15% Similarity=0.252 Sum_probs=115.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||+++++++.+.. ..+|.+..+ ..+..+ ...+.+|||||+++ ..+++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 467999999999999999999999988876 566666433 333333 36789999999887 356788999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHh--cCCCCCCCcEEEEeeCCCCCC---C-CCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 94 VVDAADPDNLSISRSELHDLL--NKPSLSGIPLLVLGNKIDKPG---A-LSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~iiv~nK~D~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
|+|+++++++..+..|+..+. ......++|+++|+||+|+.. . ...++...... ....++++++||++|.
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGL 154 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccC
Confidence 999999999988887543322 122225789999999999842 1 12222221111 1124579999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030008 168 NIDSVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~ 182 (184)
|++++|+.|.+.+.+
T Consensus 155 ~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 155 NVDRVFQEVAQKVVT 169 (178)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987754
No 68
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=2.7e-31 Score=183.57 Aligned_cols=160 Identities=23% Similarity=0.385 Sum_probs=98.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..++|+++|++|+|||||++++.++.+.....+|.+... ..+..++ ..+.+||+||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4679999999999999999999998877766667776443 3344444 78999999999999888888999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999988888877765432 24689999999999975322 22222111 1224579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 69
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-29 Score=177.67 Aligned_cols=163 Identities=19% Similarity=0.295 Sum_probs=125.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE-EE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK-VT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~-~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
...++|+++|++|+|||||++++.++.+...+.+|.+..+.. +. .....+.+|||||++.+...+..++..+|++++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 467999999999999999999999988877777777754433 22 234679999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCC-CCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKP-SLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
|+|+++++++..+..++..+.... ...+.|+++|+||+|+.+.....+....+ ....+++++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAV----AQEWKCAFMETSAKMNYNVKEL 161 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHH----HHHHTCEEEECBTTTTBSHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHH----HHHhCCeEEEEecCCCCCHHHH
Confidence 999999988887776665443321 12468999999999997533221111111 1122357999999999999999
Q ss_pred HHHHHHhhhcC
Q 030008 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~l~~~ 183 (184)
++.|.+.+.++
T Consensus 162 ~~~l~~~~~~~ 172 (199)
T 2gf0_A 162 FQELLTLETRR 172 (199)
T ss_dssp HHHHHHHCSSS
T ss_pred HHHHHHHHhhh
Confidence 99999987654
No 70
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=5.6e-31 Score=182.93 Aligned_cols=160 Identities=22% Similarity=0.255 Sum_probs=120.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||+++++++.+...+.+|.+..+. .+. .....+.+|||||++.+... ..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il 97 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV 97 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence 46799999999999999999999998887777888875432 222 33477899999999887764 568899999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeee-cCCCC
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPS--LSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISC-KNSTN 168 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~ 168 (184)
|+|+++++++..+..|+..+..... ..++|+++|+||+|+.+.. ..++..+.. ...+++++++|| ++|.|
T Consensus 98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA-----GRFGCLFFEVSACLDFEH 172 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECCSSSCSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH-----HHcCCcEEEEeecCcccc
Confidence 9999999999998888777654321 1468999999999996422 222221111 112357999999 89999
Q ss_pred HHHHHHHHHHhhhc
Q 030008 169 IDSVIDWLVKHSKS 182 (184)
Q Consensus 169 v~~l~~~i~~~l~~ 182 (184)
++++|+.|.+.+.+
T Consensus 173 v~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 173 VQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998765
No 71
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=1.5e-29 Score=175.83 Aligned_cols=161 Identities=16% Similarity=0.285 Sum_probs=115.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
+.++|+++|++|+|||||++++.++.+.....+|.+... ..+... ...+.+||+||++.+...+..+++.+|++++|
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 99 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence 569999999999999999999998887666666665433 233333 36699999999999999999999999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+|+.++.++..+..|+..+.......++|+++|+||+|+.+... .++..+.. ...+++++++||++|.|+++++
T Consensus 100 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 100 FAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA-----KSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHH
Confidence 99999988888877777665443335799999999999875322 22222211 1123479999999999999999
Q ss_pred HHHHHhhhcC
Q 030008 174 DWLVKHSKSK 183 (184)
Q Consensus 174 ~~i~~~l~~~ 183 (184)
+.|.+.+.+.
T Consensus 175 ~~l~~~~~~~ 184 (190)
T 3con_A 175 YTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 72
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=6e-30 Score=181.35 Aligned_cols=160 Identities=21% Similarity=0.285 Sum_probs=124.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEE---EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
...++|+++|++|+|||||+++++++.+...+.+|.+..+.. +......+.+|||||++++...+..+++++|++++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 467999999999999999999999998888878888765442 33455789999999999999999999999999999
Q ss_pred EEeCCCcCcHHH-HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhHhCcCcccCcce-e
Q 030008 94 VVDAADPDNLSI-SRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--------------LSKQALTDEMGLKSITDREV-C 157 (184)
Q Consensus 94 v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~-~ 157 (184)
|+|+++++++.. +..|+..+.... .+.|+++|+||+|+.+. ...++... .....++ +
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~ 177 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA-----IAKQLGAEI 177 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH-----HHHHHTCSE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH-----HHHHcCCCE
Confidence 999999999988 566666665432 47999999999999642 11111111 1112234 7
Q ss_pred EEEeeecCCCC-HHHHHHHHHHhhhcC
Q 030008 158 CFMISCKNSTN-IDSVIDWLVKHSKSK 183 (184)
Q Consensus 158 ~~~~Sa~~~~~-v~~l~~~i~~~l~~~ 183 (184)
+++|||++|.| ++++|+.|.+.+.++
T Consensus 178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 178 YLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred EEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 99999999998 999999999887654
No 73
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=182.15 Aligned_cols=160 Identities=21% Similarity=0.305 Sum_probs=117.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||+++++++.+.....+|.+.. ...+..++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 567999999999999999999999888776666766633 33444444 78999999999988888889999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ..++|+++|+||+|+.+... ..+..... ...+++++++||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999988888877765432 25789999999999864322 22222111 1234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 74
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2.1e-29 Score=178.04 Aligned_cols=162 Identities=23% Similarity=0.402 Sum_probs=124.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
..+.++|+++|++|+|||||++++++..+.....+|.+.. ...+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 4567999999999999999999999888877777776643 33455454 7899999999999988888999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
++|+|++++.++..+..|+..+.... ...+|+++|+||+|+.+.....+....+. ...+++++++||++|.|+++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNE 171 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHH----HHHTCCEEECBTTTTBSSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 99999999988888887777665432 24689999999999953322211111111 11234799999999999999
Q ss_pred HHHHHHHhhhc
Q 030008 172 VIDWLVKHSKS 182 (184)
Q Consensus 172 l~~~i~~~l~~ 182 (184)
+++.|.+.+.+
T Consensus 172 l~~~l~~~~~~ 182 (213)
T 3cph_A 172 IFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 75
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=8.6e-30 Score=175.53 Aligned_cols=162 Identities=26% Similarity=0.424 Sum_probs=113.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccce--eEEEEEeC---cEEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGF--NMRKVTKG---NVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~--~~~~~~~~---~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
++.++|+++|++|+|||||++++++..+.....+|.+. ....+... ...+.+||+||++.+...+..+++.+|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 56799999999999999999999998887776777653 33334433 47899999999999998888999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCC---CCCCCcEEEEeeCCCCCCCC---CHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKP---SLSGIPLLVLGNKIDKPGAL---SKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
++|+|+++++++..+..|+..+.... ...++|+++|+||+|+.+.. ..++...... .....+++++||++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~ 161 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAKN 161 (182)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecCC
Confidence 99999999988888887776654332 23578999999999985321 1222221111 12345799999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++++++.|.+.+.+
T Consensus 162 ~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 162 AINVDTAFEEIARSALQ 178 (182)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988754
No 76
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.96 E-value=6.3e-30 Score=179.95 Aligned_cols=172 Identities=18% Similarity=0.259 Sum_probs=119.5
Q ss_pred HHHHHHhhc-ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHH
Q 030008 7 FLNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWE 82 (184)
Q Consensus 7 ~~~~~~~~~-~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~ 82 (184)
+.+.+++.. ..+.++|+++|++|+|||||+++++++.+.....+|.+.... .+. .....+.+|||||++.+...+.
T Consensus 17 ~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 96 (204)
T 4gzl_A 17 RGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP 96 (204)
T ss_dssp -------------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGG
T ss_pred chhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence 344444433 356799999999999999999999988887777777664332 233 3446677999999999998888
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC---------ccc
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK---------SIT 152 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~---------~~~ 152 (184)
.+++++|++++|+|+++++++.... .|+..+.... .++|+++|+||+|+.+.....+........ ...
T Consensus 97 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (204)
T 4gzl_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 174 (204)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHH
Confidence 8999999999999999999998886 4555444332 579999999999997543222211111100 011
Q ss_pred C-cceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 153 D-REVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 153 ~-~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
. ...+++++||++|.|++++++.|.+.+
T Consensus 175 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 175 EIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred hcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1 123699999999999999999998765
No 77
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.96 E-value=5.5e-30 Score=180.29 Aligned_cols=160 Identities=24% Similarity=0.387 Sum_probs=126.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+..++|+++|++|+|||||++++.++.+.....+|.+... ..+..++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 5679999999999999999999999888777777776443 3344443 68999999999999888889999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++++++..+..|+..+.... ....|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHH
Confidence 9999999999988888877765432 3468999999999997532 222222111 1234579999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 160 DAFLTMARQIKE 171 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 78
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.96 E-value=1.1e-29 Score=178.80 Aligned_cols=163 Identities=25% Similarity=0.402 Sum_probs=125.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE--EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR--KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||++++.+..+...+.+|.+.... .+.. ....+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 56899999999999999999999998887777777764433 3333 3478999999999999888888899999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCC---CCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPS---LSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNI 169 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 169 (184)
+|+|+++++++..+..|+..+..... ..+.|+++|+||+|+.+.....+....+.. ....++++++||++|.|+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY---SKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH---HTTSCCEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH---hcCCceEEEEeCCCCCCH
Confidence 99999999888888777766543321 246899999999999743322221221111 123457999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030008 170 DSVIDWLVKHSKS 182 (184)
Q Consensus 170 ~~l~~~i~~~l~~ 182 (184)
+++++.|.+.+.+
T Consensus 163 ~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 163 EQAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 79
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.96 E-value=2.2e-29 Score=175.69 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=120.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCC-----------CCCccceeEEE-----EEeCcEEEEEEecCCchhhHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSED-----------MIPTVGFNMRK-----VTKGNVTIKLWDLGGQPRFRSM 80 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~-----------~~~t~~~~~~~-----~~~~~~~~~~~D~~G~~~~~~~ 80 (184)
+..++|+++|++|+|||||++.+.+ .+... ..+|.+..+.. +......+.+|||||++.+...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 5679999999999999999976664 33322 23344433322 2234578999999999999999
Q ss_pred HHHHhccCCEEEEEEeCCC------cCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCc
Q 030008 81 WERYCRAVSAIVYVVDAAD------PDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDR 154 (184)
Q Consensus 81 ~~~~~~~~~~ii~v~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
+..+++++|++++|+|+++ .+++..+..|+..+. ....++|+++|+||+|+.+....++..+.... .
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----~ 163 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP-----E 163 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT-----T
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHh-----c
Confidence 9999999999999999994 456666666776662 23367999999999999876666655554433 2
Q ss_pred ce-eEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 155 EV-CCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~-~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
++ +++++||++|.|++++++.|.+.+.+
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 34 79999999999999999999988754
No 80
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.96 E-value=2.6e-30 Score=183.49 Aligned_cols=162 Identities=22% Similarity=0.276 Sum_probs=125.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEe--C---cEEEEEEecCCchhhHHhHHHHhccCCEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTK--G---NVTIKLWDLGGQPRFRSMWERYCRAVSAI 91 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~--~---~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 91 (184)
...++|+++|++|+|||||+++++++.+.....+|.+........ . ...+.+|||||++.+......++..+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 467999999999999999999999888776667777755444321 1 17899999999999988888999999999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC-CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL-SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+....+ ....+++++++||++|.|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEV----LKGKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHH----TTTCCCEEEEEBTTTTBTTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHH----HHHcCCcEEEEecCCCCCHH
Confidence 99999999998888887776664432 2458999999999997532 112222222 12345679999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++++.|.+.+.+.
T Consensus 164 ~l~~~l~~~~~~~ 176 (218)
T 4djt_A 164 LPFLHLARIFTGR 176 (218)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988654
No 81
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=7.9e-30 Score=179.42 Aligned_cols=161 Identities=17% Similarity=0.233 Sum_probs=93.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC--CCCCCCCCccc--eeEEEEEeC----cEEEEEEecCCchhhHHhHHHHhccC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG--GYSEDMIPTVG--FNMRKVTKG----NVTIKLWDLGGQPRFRSMWERYCRAV 88 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~--~~~~~~~~t~~--~~~~~~~~~----~~~~~~~D~~G~~~~~~~~~~~~~~~ 88 (184)
...++|+++|++|+|||||++++.++ .+...+.+|.+ .....+... ...+.+|||||++.+...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999988 66666677776 333445544 57899999999999999999999999
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCC--CCCCcEEEEeeCCCCCC-C--CCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPS--LSGIPLLVLGNKIDKPG-A--LSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~nK~D~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
|++++|+|+++++++..+..|+..+..... ...+|+++|+||+|+.+ . ...++..... ...+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA-----TTNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH-----HHTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH-----HHcCCEEEEecc
Confidence 999999999999999998888887765432 25789999999999975 2 1222222221 112357999999
Q ss_pred cC-CCCHHHHHHHHHHhhhc
Q 030008 164 KN-STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~-~~~v~~l~~~i~~~l~~ 182 (184)
++ |.|++++++.|.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999987654
No 82
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=1.1e-28 Score=174.51 Aligned_cols=163 Identities=23% Similarity=0.280 Sum_probs=115.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeC---cEEEEEEecCCchhhHH-hHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKG---NVTIKLWDLGGQPRFRS-MWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~G~~~~~~-~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||+++++++.+...+.++ ......+..+ ...+.+|||||++.+.. .+..+++.+++++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 46799999999999999999999988876555443 3344445544 67899999999999987 7888899999999
Q ss_pred EEEeCCCcC-cHHHHHHHHHHHhcC--CCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc---------------------
Q 030008 93 YVVDAADPD-NLSISRSELHDLLNK--PSLSGIPLLVLGNKIDKPGALSKQALTDEMGL--------------------- 148 (184)
Q Consensus 93 ~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~--------------------- 148 (184)
+|+|+++.+ ++.....++...+.. .....+|+++|+||+|+.+....+.....+..
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999998853 345555555544322 22346899999999999765544332222110
Q ss_pred ----------Cccc-C--cceeEEEeeecCC------CCHHHHHHHHHHhh
Q 030008 149 ----------KSIT-D--REVCCFMISCKNS------TNIDSVIDWLVKHS 180 (184)
Q Consensus 149 ----------~~~~-~--~~~~~~~~Sa~~~------~~v~~l~~~i~~~l 180 (184)
.... . ..+++++|||++| .||+++|+.|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 0000 1 1678999999999 99999999998753
No 83
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.7e-30 Score=178.22 Aligned_cols=163 Identities=20% Similarity=0.297 Sum_probs=122.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
++.++|+++|++|+|||||++++.++.+...+.+|.+..+ ..+..+ ...+.+||+||++++...+..+++++|++++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 4678999999999999999999999888777777776443 234433 3789999999999999888899999999999
Q ss_pred EEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHh---------CcCcccCcce-eEEEee
Q 030008 94 VVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEM---------GLKSITDREV-CCFMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~S 162 (184)
|+|+++++++..+. .|+..+.... .++|+++|+||+|+.+.....+..... ........+. +++++|
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 99999999888886 5655554432 378999999999997532110000000 0000111122 799999
Q ss_pred ecCCCCHHHHHHHHHHhhh
Q 030008 163 CKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~ 181 (184)
|++|.|++++++.|.+.+.
T Consensus 174 a~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 174 ALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 84
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.1e-30 Score=182.32 Aligned_cols=161 Identities=20% Similarity=0.326 Sum_probs=120.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...++|+++|++|+|||||+++|.+..+.....+|.+.. ...+..++ ..+.+|||||++++...+..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 456999999999999999999999988877666776643 33444444 68999999999999888889999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|++++.++..+..|+..+.... ...+|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHH
Confidence 9999999999998888877765432 3568999999999996432 222222111 1234579999999999999
Q ss_pred HHHHHHHHhhhcC
Q 030008 171 SVIDWLVKHSKSK 183 (184)
Q Consensus 171 ~l~~~i~~~l~~~ 183 (184)
++++.|.+.+.++
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 85
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.96 E-value=1.8e-29 Score=174.64 Aligned_cols=165 Identities=19% Similarity=0.255 Sum_probs=122.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+.... .+.. ....+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 36799999999999999999999988887776777664332 2333 34678899999999998888889999999999
Q ss_pred EEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC---------cCcccCcc-eeEEEee
Q 030008 94 VVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG---------LKSITDRE-VCCFMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~S 162 (184)
|+|+++++++.... .|+..+.... .+.|+++|+||+|+.+.....+...... .......+ .+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999998888876 4555544322 3789999999999965321111111100 00111122 3799999
Q ss_pred ecCCCCHHHHHHHHHHhhhcC
Q 030008 163 CKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~~~ 183 (184)
|++|.|++++++.|.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999887653
No 86
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.96 E-value=1.9e-29 Score=174.63 Aligned_cols=160 Identities=18% Similarity=0.275 Sum_probs=121.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
...++|+++|++|+|||||++++.++.+...+.+|.+..+. .+. .....+.+||+||++.+...+..+++++|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 56799999999999999999999998887777777775442 233 344789999999999998888889999999999
Q ss_pred EEeCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhHhCcCcccCc-cee
Q 030008 94 VVDAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGA--------------LSKQALTDEMGLKSITDR-EVC 157 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~-~~~ 157 (184)
|+|+++++++..+ ..|+..+.... .+.|+++|+||+|+.+. ...++.... .... ..+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~ 157 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM-----AKQIGAAT 157 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH-----HHHHTCSE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH-----HHHcCCcE
Confidence 9999999998887 45555443322 46899999999999642 111111111 1111 247
Q ss_pred EEEeeec-CCCCHHHHHHHHHHhhhcC
Q 030008 158 CFMISCK-NSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 158 ~~~~Sa~-~~~~v~~l~~~i~~~l~~~ 183 (184)
++++||+ ++.|++++|+.+.+.+.++
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~k 184 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACVNK 184 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHhcC
Confidence 9999998 6899999999999887653
No 87
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.96 E-value=1.7e-29 Score=178.94 Aligned_cols=165 Identities=20% Similarity=0.277 Sum_probs=103.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||+++++++.+...+.+|...... .+.. ....+.+|||||++.+...+..+++++|++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 46799999999999999999999988877666666664432 2333 34579999999999999999999999999999
Q ss_pred EEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC---------cCcccCcce-eEEEee
Q 030008 94 VVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG---------LKSITDREV-CCFMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S 162 (184)
|+|+++++++..+. .|+..+.... .++|+++|+||+|+.+.....+...... .......+. +++++|
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 99999999988886 4555544322 4689999999999975422111110000 011111233 799999
Q ss_pred ecCCCCHHHHHHHHHHhhhcC
Q 030008 163 CKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~~~ 183 (184)
|++|.|++++++.|.+.+.+.
T Consensus 190 A~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999887653
No 88
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1e-28 Score=174.01 Aligned_cols=165 Identities=19% Similarity=0.259 Sum_probs=117.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
...++|+++|++|+|||||++++.++.+.....+|.+... ..+..+ ...+.+|||||++.+...+..+++++|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 4578999999999999999999999888776667766443 223333 3689999999999998888889999999999
Q ss_pred EEeCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC---------cccCcce-eEEEee
Q 030008 94 VVDAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK---------SITDREV-CCFMIS 162 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~S 162 (184)
|+|+++++++... ..|+..+.... .++|+++|+||+|+.+.....+........ .....+. +++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 9999999888887 44444443321 479999999999997542221111111110 0011122 799999
Q ss_pred ecCCCCHHHHHHHHHHhhhcC
Q 030008 163 CKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~~~ 183 (184)
|++|.|++++++.|.+.+.+.
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887543
No 89
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.96 E-value=1.1e-29 Score=178.24 Aligned_cols=165 Identities=19% Similarity=0.256 Sum_probs=121.9
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeC--cEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKG--NVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
....++|+++|++|+|||||++++.++.+...+.+|.+..+ ..+..+ ...+.+||+||++.+...+..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 35679999999999999999999999888777777766433 233333 368999999999999888888999999999
Q ss_pred EEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc---------CcccCcce-eEEEe
Q 030008 93 YVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL---------KSITDREV-CCFMI 161 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~ 161 (184)
+|+|+++++++..+. .|...+.... .+.|+++|+||+|+.+.....+....... ......+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999998888884 4444443321 47899999999999754221111111000 00111223 79999
Q ss_pred eecCCCCHHHHHHHHHHhhhc
Q 030008 162 SCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
||++|.|++++++.|.+.+.+
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999987653
No 90
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=2.6e-29 Score=177.56 Aligned_cols=159 Identities=19% Similarity=0.255 Sum_probs=121.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEe--CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTK--GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+..+. .+.. ....+.+|||||++.+...+..+++++|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 46799999999999999999999998887777777774432 2333 34789999999999998888889999999999
Q ss_pred EEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCC----------CHHHHHhHhCcCcccCcc-eeEEEe
Q 030008 94 VVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGAL----------SKQALTDEMGLKSITDRE-VCCFMI 161 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~ 161 (184)
|+|+++++++..+. .|+..+.... .+.|+++|+||+|+.+.. ..++.... ....+ .+++++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~ 159 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL-----RKQIGAAAYIEC 159 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHH-----HHHHTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHH-----HHHcCCceEEEc
Confidence 99999999988886 5655554332 379999999999986431 11111111 11112 379999
Q ss_pred eecCCCCHHHHHHHHHHhhhc
Q 030008 162 SCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
||++|.|++++|+.|.+.+.+
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999988754
No 91
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.5e-29 Score=175.44 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=114.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccc--eeEEEEEeCc--EEEEEEecCCchh-hHHhHHHHhccCC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPR-FRSMWERYCRAVS 89 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~-~~~~~~~~~~~~~ 89 (184)
...++|+++|++|+|||||+++|++... .... ++++ .....+..++ ..+.+|||+|++. +......+++.++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 3569999999999999999999995432 2222 2233 2233344433 5678999999877 4555556678899
Q ss_pred EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 90 AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
++++|||+++.++|..+..|+..+.......++|+++|+||+|+.+.. ..++. .. .....++++++|||++|.
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~-~~----~a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RA----CAVVFDCKFIETSAAVQH 188 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HH----HHHHHTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHH-HH----HHHHcCCEEEEEeCCCCC
Confidence 999999999999999988887776543333479999999999996421 11111 11 111234579999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030008 168 NIDSVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~ 182 (184)
||+++|+.|.+.+..
T Consensus 189 ~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 189 NVKELFEGIVRQVRL 203 (211)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987753
No 92
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.96 E-value=1.1e-29 Score=175.17 Aligned_cols=159 Identities=18% Similarity=0.263 Sum_probs=109.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE---EEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR---KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
.+.++|+++|++|+|||||++++.++.+...+.+|.+.... .+......+.+|||||++++...+..+++++|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 56799999999999999999999988877666666653321 123344667899999999999888899999999999
Q ss_pred EEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC------------HHHHHhHhCcCcccCcc-eeEE
Q 030008 94 VVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALS------------KQALTDEMGLKSITDRE-VCCF 159 (184)
Q Consensus 94 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 159 (184)
|+|+++++++..+. .|+..+.... .+.|+++|+||+|+.+... .++... .....+ .+++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~ 158 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE-----LKKLIGAPAYI 158 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH-----HHHHHTCSEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH-----HHHHcCCCEEE
Confidence 99999999888886 4555544322 3799999999999864321 111111 111122 3799
Q ss_pred EeeecCCCCHHHHHHHHHHhhhc
Q 030008 160 MISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
++||++|.|++++++.|.+.+.+
T Consensus 159 ~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 159 ECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999987653
No 93
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.96 E-value=1e-29 Score=180.84 Aligned_cols=160 Identities=21% Similarity=0.409 Sum_probs=126.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEE----EeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...++|+++|++|||||||+++++.+.+...+.+|.+...... ......+.+|||||++.+...+..+++++|+++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 4679999999999999999999776666666667776444332 234578999999999999988899999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
+|+|++++.++..+..|+..+.... .++|+++|+||+|+.+.....+ ........+++++++||++|.|++++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 93 IMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGG-----GCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHH-----HHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999988888887776543 4789999999999975433211 11122233567999999999999999
Q ss_pred HHHHHHhhhcC
Q 030008 173 IDWLVKHSKSK 183 (184)
Q Consensus 173 ~~~i~~~l~~~ 183 (184)
++.|.+.+.+.
T Consensus 166 ~~~l~~~l~~~ 176 (221)
T 3gj0_A 166 FLWLARKLIGD 176 (221)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhC
Confidence 99999887653
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=2.7e-29 Score=173.99 Aligned_cols=163 Identities=16% Similarity=0.324 Sum_probs=113.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC--CCCCCCCCccceeEEEEE-------eCcEEEEEEecCCchhhHHhHHHHhccCC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG--GYSEDMIPTVGFNMRKVT-------KGNVTIKLWDLGGQPRFRSMWERYCRAVS 89 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~--~~~~~~~~t~~~~~~~~~-------~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 89 (184)
+++|+++|++|||||||++++++. .+...+.+|.+....... .....+.+|||+|++++......++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999974 344556777776544332 24568999999999999888888899999
Q ss_pred EEEEEEeCCCc-CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcce----eEEEeeec
Q 030008 90 AIVYVVDAADP-DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREV----CCFMISCK 164 (184)
Q Consensus 90 ~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~ 164 (184)
++++|+|++++ .++..+..|+..+.... .+.|+++|+||+|+.+...................++ +++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999987 47888888877765432 3689999999999974322111111111111112223 38999999
Q ss_pred CCC-CHHHHHHHHHHhhhcC
Q 030008 165 NST-NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 165 ~~~-~v~~l~~~i~~~l~~~ 183 (184)
++. |++++++.|.+.+.+.
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNF 179 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC
T ss_pred cCchhHHHHHHHHHHHHhcc
Confidence 997 9999999999887654
No 95
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=5.1e-29 Score=174.68 Aligned_cols=160 Identities=19% Similarity=0.265 Sum_probs=114.7
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
..+.++|+++|++|+|||||+++++++.+...+.+|.+..+. .+..++ ..+.+|||||++++...+..++.++|+++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 467899999999999999999999988877777777764432 344444 57889999999999888888999999999
Q ss_pred EEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHhHhCcCcccCcc-e
Q 030008 93 YVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGAL--------------SKQALTDEMGLKSITDRE-V 156 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~-~ 156 (184)
+|+|+++++++..+. .|+..+.... .++|+++|+||+|+.+.. ..++... + ....+ .
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~~ 169 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL-L----AEEIKAA 169 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-H----HHHHTCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH-H----HHhcCCc
Confidence 999999999988886 5665554432 379999999999986421 1111111 1 11112 3
Q ss_pred eEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 157 CCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+++++||++|.|++++++.|.+.+.+
T Consensus 170 ~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 170 SYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 79999999999999999999887754
No 96
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.96 E-value=4.3e-29 Score=175.84 Aligned_cols=160 Identities=18% Similarity=0.275 Sum_probs=122.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEE--eCcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVT--KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~--~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
+..++|+++|++|+|||||++++.+..+...+.+|.+..+. .+. .....+.+|||||++.+...+..+++++|++++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 56799999999999999999999998887777777775443 233 334789999999999998888889999999999
Q ss_pred EEeCCCcCcHHHH-HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHhHhCcCcccCc-cee
Q 030008 94 VVDAADPDNLSIS-RSELHDLLNKPSLSGIPLLVLGNKIDKPGAL--------------SKQALTDEMGLKSITDR-EVC 157 (184)
Q Consensus 94 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~-~~~ 157 (184)
|+|+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.. ..++.... .... ..+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~ 178 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM-----AKQIGAAT 178 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH-----HHHHTCSE
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH-----HHHcCCCE
Confidence 9999999988887 45655554322 468999999999996421 11111110 1111 247
Q ss_pred EEEeeec-CCCCHHHHHHHHHHhhhcC
Q 030008 158 CFMISCK-NSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 158 ~~~~Sa~-~~~~v~~l~~~i~~~l~~~ 183 (184)
+++|||+ ++.|++++|+.|.+.+.++
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l~~ 205 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACVNK 205 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHhhC
Confidence 9999998 6899999999999887653
No 97
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=4.6e-28 Score=166.47 Aligned_cols=163 Identities=19% Similarity=0.304 Sum_probs=120.0
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcc--ceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTV--GFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
+.++.++|+++|++|+|||||++++.+..+.....++. ......+..++..+.+|||||++.+...+..++..+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 34678999999999999999999999887765544433 3444556677888999999999998888888889999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCc--ccCc--ceeEEEeeecCCCC
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS--ITDR--EVCCFMISCKNSTN 168 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~Sa~~~~~ 168 (184)
+|+|++++...... ..+..+.. .++|+++|+||+|+.+. ..++....+.... .... ..+++++||++|.|
T Consensus 84 ~v~d~~~~~~~~~~-~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQTV-EAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHHH-HHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHHH-HHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 99999886433322 22232221 46899999999999764 3333333332211 1111 26899999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 030008 169 IDSVIDWLVKHSKSK 183 (184)
Q Consensus 169 v~~l~~~i~~~l~~~ 183 (184)
++++++.|.+.+...
T Consensus 158 v~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 158 LDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999887653
No 98
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.96 E-value=8.5e-31 Score=183.62 Aligned_cols=158 Identities=26% Similarity=0.441 Sum_probs=117.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccc--eeEEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
++.++|+++|++|+|||||++++.++.+.....++.+ .....+..++ ..+.+|||||++.+...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 3569999999999999999999998777665555555 3344455444 67999999999999888888999999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-----HHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-----KQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|+|+++++++..+..|+..+.... ..++|+++|+||+|+.+... ..++.. ..+++++++||++|.
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~--------~~~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFAD--------SLGIPFLETSAKNAT 181 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHH--------TTTCCBCCCCC---H
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHH--------HcCCeEEEEECCCCC
Confidence 9999999999999988887775543 35799999999999864321 122222 234579999999999
Q ss_pred CHHHHHHHHHHhhhcC
Q 030008 168 NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~~ 183 (184)
|++++++.|.+.+.++
T Consensus 182 gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 182 NVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988764
No 99
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=1.6e-27 Score=166.16 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=108.1
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCcEEEEEEecCC----------chhhHHhHHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGG----------QPRFRSMWER 83 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G----------~~~~~~~~~~ 83 (184)
....++|+++|++|+|||||+++++++.+.....++.+... .....+ ..+.+||||| ++.+...+..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 34679999999999999999999998764443333333211 112222 3699999999 6777777888
Q ss_pred HhccC---CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEE
Q 030008 84 YCRAV---SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 84 ~~~~~---~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+++.+ +++++|+|++++.++.... +...+.. ...|+++|+||+|+.+.....................++++
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL 173 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence 87777 9999999999887665532 1112211 46899999999999865443322222221112234568999
Q ss_pred eeecCCCCHHHHHHHHHHhhhc
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+||++|.|++++++.|.+.+.+
T Consensus 174 ~Sa~~~~gv~~l~~~l~~~l~~ 195 (195)
T 1svi_A 174 FSSETKKGKDEAWGAIKKMINR 195 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHTC
T ss_pred EEccCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999988753
No 100
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=2.2e-27 Score=169.65 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=110.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEEeCcEEEEEEecCCc------hhh---HHhHHHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQ------PRF---RSMWERYC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~G~------~~~---~~~~~~~~ 85 (184)
.+.++|+++|++|+|||||+++++++.+.. ....|.......+......+.+|||||+ +.. ...+..+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 457999999999999999999999876632 2333555556666667789999999998 432 12234456
Q ss_pred ccCCEEEEEEeCCCcCcHHH--HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH-HHHhHhCcCcccCc--ceeEEE
Q 030008 86 RAVSAIVYVVDAADPDNLSI--SRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ-ALTDEMGLKSITDR--EVCCFM 160 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~ 160 (184)
..+|++++|+|++++.++.. ...++..+... ....|+++|+||+|+.+..... ....... ...... .+++++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIK-QILDNVKNPIKFSS 183 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHH-HHHHHCCSCEEEEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHH-HHHHhcCCCceEEE
Confidence 78899999999999877642 23445544332 2478999999999997543221 1111110 111112 267999
Q ss_pred eeecCCCCHHHHHHHHHHhhhc
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+||++|.|++++++.|.+.+.+
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 101
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.95 E-value=1.6e-28 Score=171.75 Aligned_cols=161 Identities=18% Similarity=0.261 Sum_probs=111.8
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccc----eeEEEEE-eCcEEEEEEecCCchhhHHhH---HHHhcc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG----FNMRKVT-KGNVTIKLWDLGGQPRFRSMW---ERYCRA 87 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~----~~~~~~~-~~~~~~~~~D~~G~~~~~~~~---~~~~~~ 87 (184)
.++.+||+++|++|+|||||++++.+.-. .....+.. .....+. .....+.+|||||++++.... ..++++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 35789999999999999999998875422 22211111 1111222 455889999999999987766 888999
Q ss_pred CCEEEEEEeCCCc--CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhH----hCcCcccCccee
Q 030008 88 VSAIVYVVDAADP--DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS----KQALTDE----MGLKSITDREVC 157 (184)
Q Consensus 88 ~~~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----~~~~~~~----~~~~~~~~~~~~ 157 (184)
+|++++|+|++++ +++..+..|+..+... ..+.|+++|+||+|+.+... ...+... +........+++
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS 173 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence 9999999999987 5566666666665322 24799999999999875321 1122111 111111245678
Q ss_pred EEEeeecCCCCHHHHHHHHHHhh
Q 030008 158 CFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 158 ~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
+++|||++ .|++++|+.|.+.+
T Consensus 174 ~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 174 FYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEECTTS-THHHHHHHHHHHHT
T ss_pred eEEEEech-hhHHHHHHHHHHHh
Confidence 99999999 99999999998865
No 102
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=2.4e-27 Score=162.50 Aligned_cols=154 Identities=16% Similarity=0.201 Sum_probs=109.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhhH----H----hHHHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR----S----MWERYC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~----~----~~~~~~ 85 (184)
++..+|+++|++|+|||||++++.+.... ..+..|.......+..++..+.+|||||++... . ....++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 35689999999999999999999976532 233344555556677777889999999986431 1 122457
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
+.+|++++|+|++++.++.. ..|+..+.... ..++|+++|+||+|+.+... ........+++++||++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL----------GMSEVNGHALIRLSART 149 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC----------EEEEETTEEEEECCTTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh----------hhhhccCCceEEEeCCC
Confidence 89999999999998887653 34444443322 24689999999999853211 11122356799999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++++++.|.+.+..
T Consensus 150 g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp CTTHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHhhh
Confidence 99999999999887653
No 103
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=4.2e-27 Score=159.09 Aligned_cols=149 Identities=16% Similarity=0.210 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchh-------hHHhHHHHhccCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-------FRSMWERYCRAVS 89 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~~ 89 (184)
.+|+++|++|+|||||++++.+.... .....+.......+...+..+.+|||||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 58999999999999999999987642 2233344455566677778999999999876 4556677889999
Q ss_pred EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcce-eEEEeeecCCCC
Q 030008 90 AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREV-CCFMISCKNSTN 168 (184)
Q Consensus 90 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 168 (184)
++++|+|++++.+... .++...+.. ...|+++|+||+|+.+.. ++ ...+ . ..+. +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~-~~~~----~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE--LY-LGPL----Y-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG--GG-CGGG----G-GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch--Hh-HHHH----H-hCCCCCeEEEecccCCC
Confidence 9999999998644322 233333322 468999999999997541 11 1111 1 1223 689999999999
Q ss_pred HHHHHHHHHHhhh
Q 030008 169 IDSVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~l~ 181 (184)
++++++.|.+.++
T Consensus 149 v~~l~~~l~~~l~ 161 (161)
T 2dyk_A 149 LEELLEAIWERLP 161 (161)
T ss_dssp HHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhCc
Confidence 9999999988763
No 104
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.95 E-value=4.6e-28 Score=168.94 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=110.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC--CCCCCCC-ccceeEEEEEeCc--EEEEEEecCCchh-hHHhHHHHhccCCE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG--YSEDMIP-TVGFNMRKVTKGN--VTIKLWDLGGQPR-FRSMWERYCRAVSA 90 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~--~~~~~~~-t~~~~~~~~~~~~--~~~~~~D~~G~~~-~~~~~~~~~~~~~~ 90 (184)
.+.++|+++|++|+|||||++++++.. +.....+ +.......+..++ ..+.+|||+|++. .......+++.+++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 467999999999999999999998532 2322222 1222233344433 5678999999765 34445567788999
Q ss_pred EEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCC
Q 030008 91 IVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTN 168 (184)
Q Consensus 91 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 168 (184)
+++|||+++.+++.....|+..+.......++|+++|+||+|+.+... .++. ..+ ....++++++|||++|.|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~-~~~----a~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG-RAX----AVVFDXKFIETSAAVQHN 158 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHH-HHH----HHHTTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHH-HHH----HHHhCCceEEeccccCCC
Confidence 999999999999998888776665433335789999999999864211 1111 111 112235799999999999
Q ss_pred HHHHHHHHHHhhh
Q 030008 169 IDSVIDWLVKHSK 181 (184)
Q Consensus 169 v~~l~~~i~~~l~ 181 (184)
|+++|+.|.+.+.
T Consensus 159 v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 159 VKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 105
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=6.1e-30 Score=179.85 Aligned_cols=163 Identities=19% Similarity=0.279 Sum_probs=120.1
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-E--EEeCcEEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-K--VTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.++.++|+++|++|+|||||+++++++.+.....+|.+.... . +......+.+|||||++++...+..+++++|+++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 357899999999999999999999987776666666553322 2 2334466779999999999999999999999999
Q ss_pred EEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH---------HHHhHhCcCcccCcce-eEEEe
Q 030008 93 YVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ---------ALTDEMGLKSITDREV-CCFMI 161 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~ 161 (184)
+|+|+++++++.... .|+..+.... .++|+++|+||+|+.+..... ..............+. +++++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 999999999888876 4444443221 378999999999997532111 1111111122222333 78999
Q ss_pred eecCCCCHHHHHHHHHHhh
Q 030008 162 SCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l 180 (184)
||++|.|++++++.|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999988764
No 106
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=4e-27 Score=163.92 Aligned_cols=159 Identities=19% Similarity=0.182 Sum_probs=109.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE-EEEEeCcEEEEEEecCC----------chhhHHhHHHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM-RKVTKGNVTIKLWDLGG----------QPRFRSMWERYC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~D~~G----------~~~~~~~~~~~~ 85 (184)
...++|+++|++|+|||||++++++.... ...++.+... ......+..+.+||||| ++.+...+..++
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 45689999999999999999999987643 2233332111 11111234688999999 666777777777
Q ss_pred ccC---CEEEEEEeCCCcCcHHHH--HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEE
Q 030008 86 RAV---SAIVYVVDAADPDNLSIS--RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFM 160 (184)
Q Consensus 86 ~~~---~~ii~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (184)
+.+ +++++|+|+.+..+.... ..++.. .+.|+++|+||+|+.+....................+++++
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred hcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence 666 999999999876443322 233332 26899999999999865544443333332222223467999
Q ss_pred eeecCCCCHHHHHHHHHHhhhcC
Q 030008 161 ISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 161 ~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
+||++|.|++++++.|.+.+.++
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l~~~ 195 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLLKEN 195 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC--
T ss_pred EecCCCCCHHHHHHHHHHHhhcC
Confidence 99999999999999999988753
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=2e-26 Score=156.85 Aligned_cols=149 Identities=22% Similarity=0.238 Sum_probs=107.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--ccceeEEEEEeCcEEEEEEecCCchhhH------HhHHHHhc--c
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFR------SMWERYCR--A 87 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~--~ 87 (184)
+.++|+++|++|+|||||++++.+..+.....+ |.......+..++..+.+|||||++.+. .....++. +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 358999999999999999999997665433333 3444455566677899999999987663 33445554 7
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC----CHHHHHhHhCcCcccCcceeEEEeee
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL----SKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++++++|+|+.+.+ ....|+..+.. .++|+++|+||+|+.... ..+++.+.. +++++++||
T Consensus 82 ~~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~SA 146 (165)
T 2wji_A 82 PDLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVPLSA 146 (165)
T ss_dssp CSEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBG
T ss_pred CCEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHh--------CCCEEEEEc
Confidence 99999999998753 23345544433 368999999999985321 223333332 246999999
Q ss_pred cCCCCHHHHHHHHHHhhh
Q 030008 164 KNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~ 181 (184)
++|.|++++|+.|.+.+.
T Consensus 147 ~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 147 AKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGTBSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998764
No 108
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=3.8e-26 Score=169.91 Aligned_cols=160 Identities=19% Similarity=0.136 Sum_probs=121.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeC-cEEEEEEecCCchhh----------HHhHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPRF----------RSMWE 82 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~----------~~~~~ 82 (184)
++.-.|+++|++|+|||||+|++++..+. ..+.+|..........+ +..+.+|||||+... .....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 45678999999999999999999987764 34455666666667777 899999999997443 35667
Q ss_pred HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC-CCCCHHHHHhHhCcCcccCcceeEEEe
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP-GALSKQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
.++..+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+. +.....+....+.... ....+++++
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~~v 161 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIVPI 161 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEEEC
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEEEE
Confidence 788999999999999998877776655555433 468999999999997 4433333333332211 123469999
Q ss_pred eecCCCCHHHHHHHHHHhhhc
Q 030008 162 SCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
||++|.|++++++.|.+.+.+
T Consensus 162 SA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 162 SALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp BTTTTBSHHHHHHHHHHHSCB
T ss_pred eCCCCCCHHHHHHHHHHhCcc
Confidence 999999999999999998865
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=1.8e-27 Score=165.10 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=110.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCC-----------chhhHHhHHHHhcc-
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG-----------QPRFRSMWERYCRA- 87 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G-----------~~~~~~~~~~~~~~- 87 (184)
++|+++|++|+|||||++++.+..+.....++.......+... .+.+||||| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999998887666556555444444444 689999999 66777777777766
Q ss_pred CCEEEEEEeCCCcCcHHHH-HHHHHH--------HhcCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhHhCcCcccCcce
Q 030008 88 VSAIVYVVDAADPDNLSIS-RSELHD--------LLNKPSLSGIPLLVLGNKIDKPGAL--SKQALTDEMGLKSITDREV 156 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (184)
++++++|+++.+..++... ..|... +.......++|+++|+||+|+.+.. ..+++...++... .....
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCC
Confidence 6666666666666666555 222221 1111112469999999999997543 1233444443311 11134
Q ss_pred eEEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 157 CCFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 157 ~~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
+++++||++|.|++++++.|.+.+.++
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 689999999999999999999987654
No 110
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=1.3e-26 Score=172.34 Aligned_cols=161 Identities=18% Similarity=0.215 Sum_probs=119.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEe-CcEEEEEEecCCchhh-----HHhHHHHhccC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRF-----RSMWERYCRAV 88 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~-----~~~~~~~~~~~ 88 (184)
..+||+++|++|+|||||+++++++... ..+.+|.+.....+.. ++..+.+||+||++.+ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 5689999999999999999999876332 3577888888777764 5789999999999988 56778888999
Q ss_pred CEEEEEEeCCCcCcHHHHHHHH---HHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH---HHhHhCcCcccCc---ceeEE
Q 030008 89 SAIVYVVDAADPDNLSISRSEL---HDLLNKPSLSGIPLLVLGNKIDKPGALSKQA---LTDEMGLKSITDR---EVCCF 159 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~---~~~~~~~~~~~~~---~~~~~ 159 (184)
|++++|+|+++++++..+..|. ..+... ..++|+++|+||+|+.+.....+ ............. .++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999999999999988876553 333221 24699999999999975322220 1111111111222 36899
Q ss_pred EeeecCCCCHHHHHHHHHHhhh
Q 030008 160 MISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
++||++ .|+.+++..+.+.+.
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTTC
T ss_pred EeeecC-ChHHHHHHHHHHHHc
Confidence 999999 889999988877653
No 111
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=8e-26 Score=167.49 Aligned_cols=156 Identities=20% Similarity=0.182 Sum_probs=113.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchh--------hHHhHHHHhc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR--------FRSMWERYCR 86 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~--------~~~~~~~~~~ 86 (184)
+..+|+++|++|+|||||+|++++..+. ..+.+|.......+..++.++.+|||||+.. +......+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 4567999999999999999999987764 2334455544455667789999999999765 4556667889
Q ss_pred cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 87 AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 87 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
.+|++++|+|++++.+.. ..++...+.... .+.|+++|+||+|+.+... ..+..+.+ ....+++++||++
T Consensus 86 ~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSALD 156 (301)
T ss_dssp SCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTTC
T ss_pred cCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCCC
Confidence 999999999998875433 344433333221 3689999999999975422 22222222 2234689999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++++++.|.+.+++
T Consensus 157 g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 157 ERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999987754
No 112
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.94 E-value=1.2e-26 Score=164.96 Aligned_cols=161 Identities=18% Similarity=0.214 Sum_probs=110.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC----CCCCCCccceeEEEEE-eCcEEEEEEecCCc----------hhhHHhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY----SEDMIPTVGFNMRKVT-KGNVTIKLWDLGGQ----------PRFRSMW 81 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~----~~~~~~t~~~~~~~~~-~~~~~~~~~D~~G~----------~~~~~~~ 81 (184)
...++|+++|++|+|||||+|++++... ...+..|.......+. ..+..+.+|||||. +.+...+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 4578999999999999999999998752 1223334444444444 44578999999993 4445666
Q ss_pred HHHhcc---CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCccc------
Q 030008 82 ERYCRA---VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSIT------ 152 (184)
Q Consensus 82 ~~~~~~---~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~------ 152 (184)
..++.. +|++++|+|+.++.+.. ...+...+.. .++|+++|+||+|+.+.................
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~--~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTEL--DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHH--HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHH--HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 666655 78899999998764322 2222223322 468999999999997543322222222111111
Q ss_pred CcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 153 DREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
....+++++||++|.|++++++.|.+.+..
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 245689999999999999999999998765
No 113
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.94 E-value=3.9e-26 Score=171.29 Aligned_cols=166 Identities=18% Similarity=0.252 Sum_probs=122.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEE-EEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMR-KVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
.+..++|+++|++|+|||||+++++++.+...+.+|.+.... .+..++ ..+.+|||||++.+...+..+++++|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 467799999999999999999999988887777777764433 334443 55669999999999888888999999999
Q ss_pred EEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCc---------CcccCcc-eeEEEe
Q 030008 93 YVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGL---------KSITDRE-VCCFMI 161 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~ 161 (184)
+|+|++++.++..+. .|+..+.... .++|+++|+||+|+.+.....+....... ......+ .++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 999999999888876 4444443322 37899999999998643211111111000 0011122 379999
Q ss_pred eecCCCCHHHHHHHHHHhhhcC
Q 030008 162 SCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
||++|.|++++++.|.+.+.+.
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999887653
No 114
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.94 E-value=5.2e-26 Score=176.58 Aligned_cols=160 Identities=16% Similarity=0.131 Sum_probs=114.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCc----------hhhHHhHH-H
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQ----------PRFRSMWE-R 83 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~----------~~~~~~~~-~ 83 (184)
..++|+++|++|+|||||+|++++... ......|.......+..++..+.+|||||+ +.+..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 458999999999999999999997764 233445555555667778888999999997 55554433 4
Q ss_pred HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEe
Q 030008 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++.+|++++|+|++++.++... .++..+.. .++|+++|+||+|+.+... .++..+...........++++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 77889999999999998877664 34443332 4699999999999976433 23333333333333345689999
Q ss_pred eecCCCCHHHHHHHHHHhhhc
Q 030008 162 SCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
||++|.|++++++.+.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 115
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=1.5e-26 Score=171.32 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=113.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCC---CCCCccceeEEEEEeCcEEEEEEecCCchhhHH---hHHHHhccCCEEEEE
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS---MWERYCRAVSAIVYV 94 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~---~~~~~~~~~~~ii~v 94 (184)
||+++|+.|+|||||++++.++-.+. ...+|++.....+. ...++.+|||+|++++.. ....++++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999887654332 35678887766653 458899999999999964 468899999999999
Q ss_pred EeCCCc--CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH----HHHHhHhCcCccc----CcceeEEEeeec
Q 030008 95 VDAADP--DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK----QALTDEMGLKSIT----DREVCCFMISCK 164 (184)
Q Consensus 95 ~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~Sa~ 164 (184)
+|+++. +....+..++..+... .+++|+++|+||+|+.+...+ +++.......... ..+++|++|||+
T Consensus 80 ~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 2222222223332221 247999999999999754321 2333333333333 257899999999
Q ss_pred CCCCHHHHHHHHHHhhhc
Q 030008 165 NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~~ 182 (184)
+ .+|.+.|..|++.+..
T Consensus 158 d-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp S-SHHHHHHHHHHTTSST
T ss_pred C-CcHHHHHHHHHHHHHh
Confidence 8 5899999999887654
No 116
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.93 E-value=9.9e-26 Score=157.82 Aligned_cols=160 Identities=20% Similarity=0.317 Sum_probs=119.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCcccee--EEEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...++|+++|++|||||||++++++..+.....+|.+.. ...+..++ ..+.+||+||++.+......+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 457899999999999999999999888776666776533 34455444 56789999999988888888888999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+.+..++..+..|+..+... .....|+++|+||+|+.+... ..+.... ....++.++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l-----~~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF-----AEKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCeEEEEeCCCCCCHH
Confidence 999999988887777776554332 224689999999999864322 2221111 11234578999999999999
Q ss_pred HHHHHHHHhhhc
Q 030008 171 SVIDWLVKHSKS 182 (184)
Q Consensus 171 ~l~~~i~~~l~~ 182 (184)
++++.|.+.+.+
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=3.3e-25 Score=153.56 Aligned_cols=151 Identities=23% Similarity=0.248 Sum_probs=111.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--ccceeEEEEEeCcEEEEEEecCCchhhH------HhHHHHhc--c
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTKGNVTIKLWDLGGQPRFR------SMWERYCR--A 87 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~--~ 87 (184)
+.++|+++|++|+|||||++++++..+.....+ |.......+..++..+.+|||||++.+. .....++. .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 568999999999999999999997654322223 4445556677778999999999988763 34555554 4
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA----LSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
++++++|+|+.+ +.....++..+.. .+.|+++|+||+|+... ...+++.+.. +++++++||
T Consensus 86 ~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~Sa 150 (188)
T 2wjg_A 86 PDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVPLSA 150 (188)
T ss_dssp CSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBG
T ss_pred CCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHh--------CCCeEEEEe
Confidence 899999999875 4445555555543 46899999999998532 1233333333 246999999
Q ss_pred cCCCCHHHHHHHHHHhhhcC
Q 030008 164 KNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~~ 183 (184)
+++.|++++++.|.+.+.++
T Consensus 151 ~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 151 AKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp GGTBSHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999987654
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=3.3e-25 Score=160.94 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=111.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEEeCcEEEEEEecCCchhhHH------hHHHHh--c
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYC--R 86 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~ 86 (184)
.+.++|+++|++|||||||+|+|++..+.. .+..|.......+...+..+.+|||||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 357899999999999999999999766533 234455556666777789999999999876542 234444 5
Q ss_pred cCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhHhCcCcccCcceeEEEee
Q 030008 87 AVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA----LSKQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 87 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.+|++++|+|+++.++.. .++..+.. .++|+++|+||+|+... ....++.+.+ +++++++|
T Consensus 83 ~~d~ii~V~D~t~~~~~~---~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l--------g~~vi~~S 147 (258)
T 3a1s_A 83 DADLVILVADSVNPEQSL---YLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL--------GIPVVFTS 147 (258)
T ss_dssp CCSEEEEEEETTSCHHHH---HHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH--------CSCEEECC
T ss_pred CCCEEEEEeCCCchhhHH---HHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHc--------CCCEEEEE
Confidence 799999999999875432 34444433 36999999999998532 1233444433 35799999
Q ss_pred ecCCCCHHHHHHHHHHhhh
Q 030008 163 CKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~ 181 (184)
|++|.|++++++.|.+.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998765
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=2.2e-26 Score=166.95 Aligned_cols=145 Identities=21% Similarity=0.211 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC--CCCCccceeEEEEEeCcEEEEEEecCCchhhHH----------hHHHHh--
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE--DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS----------MWERYC-- 85 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~~-- 85 (184)
.+|+++|++|||||||+|++++..... .+..|.......+..++..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 479999999999999999999775433 234455566677777888999999999876543 445555
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC----CHHHHHhHhCcCcccCcceeEEEe
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL----SKQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
.++|++++|+|+++.++...+.. .+.. .++|+++|+||+|+.+.. ....+...+ +++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~---~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTS---QLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLL--------GCSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHH---HHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH--------CSCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHHHHH---HHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc--------CCCEEEE
Confidence 88999999999998654333332 2222 368999999999985432 223333333 3579999
Q ss_pred eecCCCCHHHHHHHHHHh
Q 030008 162 SCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~ 179 (184)
||++|.|++++++.|.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999876
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=1.5e-25 Score=164.17 Aligned_cols=150 Identities=21% Similarity=0.244 Sum_probs=110.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCC--CCCccceeEEEEEeCcEEEEEEecCCchhhH----------HhHHHHh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR----------SMWERYC 85 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~~~~ 85 (184)
+.++|+++|++|||||||+|++++...... +..|.......+...+..+.+|||||+..+. .....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 468999999999999999999998765332 3345556666677777899999999976654 2223333
Q ss_pred --ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC----CHHHHHhHhCcCcccCcceeEE
Q 030008 86 --RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL----SKQALTDEMGLKSITDREVCCF 159 (184)
Q Consensus 86 --~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
..+|++++|+|+++.+....+..++... ++|+++|+||+|+.+.. ..+.+.+.+ +++++
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARL--------GCPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHH--------TSCEE
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhc--------CCCEE
Confidence 6899999999999865444444443332 69999999999986432 223333333 35799
Q ss_pred EeeecCCCCHHHHHHHHHHhhhc
Q 030008 160 MISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
++||++|.|++++++.|.+.+.+
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999987754
No 121
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.6e-26 Score=167.83 Aligned_cols=161 Identities=15% Similarity=0.182 Sum_probs=108.2
Q ss_pred cceeEEEEEcCC---------CCChHHHHHHHHc---CCCCCCCCCcc-ceeE--E----------------EEEeCcEE
Q 030008 17 KQEMELSLIGLQ---------NAGKTSLVNVVAT---GGYSEDMIPTV-GFNM--R----------------KVTKGNVT 65 (184)
Q Consensus 17 ~~~~~v~i~G~~---------~sGKStli~~l~~---~~~~~~~~~t~-~~~~--~----------------~~~~~~~~ 65 (184)
...+||+++|.+ |+|||||+++|++ ..+.....+|. +..+ . .++.....
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 456999999999 9999999999998 44544444443 2110 0 02334577
Q ss_pred EEEEe-----------------------cCCchhhHHhHHHHhc---------------------cCCEEEEEEeCCCc-
Q 030008 66 IKLWD-----------------------LGGQPRFRSMWERYCR---------------------AVSAIVYVVDAADP- 100 (184)
Q Consensus 66 ~~~~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~ii~v~d~~~~- 100 (184)
+.+|| ++|++++...+..++. ++|++++|+|++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 89999 4444444444444444 79999999999998
Q ss_pred -CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHh
Q 030008 101 -DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKH 179 (184)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 179 (184)
+++..+..|+..+.......++|+++|+||+|+.+....++..... ....+++++++||++|.|++++|+.|.+.
T Consensus 177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~----~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFA----LSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHH----HTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHH----HhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 8999988888776543222469999999999996432221111111 11124579999999999999999999987
Q ss_pred hh
Q 030008 180 SK 181 (184)
Q Consensus 180 l~ 181 (184)
+.
T Consensus 253 l~ 254 (255)
T 3c5h_A 253 ID 254 (255)
T ss_dssp HH
T ss_pred hc
Confidence 75
No 122
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=9.2e-26 Score=179.26 Aligned_cols=157 Identities=24% Similarity=0.334 Sum_probs=106.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE------------eCcEEEEEEecCCchhhHHhHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT------------KGNVTIKLWDLGGQPRFRSMWERY 84 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~------------~~~~~~~~~D~~G~~~~~~~~~~~ 84 (184)
.+.+||+++|++|+|||||++++++..+.....+|.+....... .....+.+||+||++.+......+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 45799999999999999999999998887777788876655321 225789999999999998888889
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEee
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S 162 (184)
++.++++++|+|+++.+.. ..|+..+.... .+.|+++|+||+|+.+... .++...... ..+++++++|
T Consensus 119 l~~~d~ii~V~D~s~~~~~---~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~vS 188 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTDSNK---HYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFP-----AIENRFHRIS 188 (535)
T ss_dssp HHSSEEEEEEECGGGGGGH---HHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCG-----GGTTCEEECC
T ss_pred ccCCcEEEEEEeCCCchhH---HHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHH-----hcCCceEEEe
Confidence 9999999999999876543 44444443322 3589999999999975322 222322221 2234699999
Q ss_pred ecCCCCHHHHHHHHHHhhhcC
Q 030008 163 CKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~~~ 183 (184)
|++|.|++++++.|.+.+.+.
T Consensus 189 A~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp C-----CTTHHHHHHHHHTCT
T ss_pred cCcccCHHHHHHHHHHHHhcc
Confidence 999999999999999987653
No 123
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=3.5e-25 Score=161.77 Aligned_cols=148 Identities=26% Similarity=0.288 Sum_probs=106.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCC--CCCccceeEEEEEeCcEEEEEEecCCchhhH------HhHHHHhc--c
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSED--MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR------SMWERYCR--A 87 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~------~~~~~~~~--~ 87 (184)
..++|+++|++|||||||+|++++...... +..|.......+.. +..+.+|||||+..+. .....++. .
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 357999999999999999999997654333 23344444444444 6679999999988764 44555554 6
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA----LSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+|++++|+|+++.++. ..+...+.. .++|+++|+||+|+... .....+.+.+ +++++++||
T Consensus 81 ~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL--------GVPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBT
T ss_pred CCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc--------CCCEEEEEc
Confidence 9999999999886433 233333332 36999999999998532 1223333333 357999999
Q ss_pred cCCCCHHHHHHHHHHhhh
Q 030008 164 KNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~ 181 (184)
++|.|++++++.|.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999988764
No 124
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=5.2e-25 Score=171.84 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=112.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCC----------chhhHHhHH-H
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGG----------QPRFRSMWE-R 83 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G----------~~~~~~~~~-~ 83 (184)
..++|+++|.+|+|||||++++++... ......|.......+..++..+.+||||| ++.+..... .
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 468999999999999999999996542 23344455555566777788999999999 677766544 4
Q ss_pred HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEe
Q 030008 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++.+|++++|+|++++..... ..++..+.. .++|+++|+||+|+.+... .++..+...........++++++
T Consensus 274 ~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 348 (456)
T ss_dssp HHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 7789999999999998643222 222222222 4699999999999975432 23333333333223345689999
Q ss_pred eecCCCCHHHHHHHHHHhhhc
Q 030008 162 SCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
||++|.|++++++.+.+.+.+
T Consensus 349 SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 349 SALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999987754
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=8.9e-25 Score=170.50 Aligned_cols=154 Identities=18% Similarity=0.143 Sum_probs=98.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHH--------HH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE--------RY 84 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~--------~~ 84 (184)
.++.++|+++|.+|+|||||+|+|++... ...+..|.......+..++..+.+|||||+..+...+. .+
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 45679999999999999999999997642 23344566666677778889999999999877654433 35
Q ss_pred hccCCEEEEEEeCCCcCcHHHH---HHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEe
Q 030008 85 CRAVSAIVYVVDAADPDNLSIS---RSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+..+|++++|+|++++.++... ..++..+ .++|+++|+||+|+.+...... +.+... ...+++++
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~--~~l~~~----~~~~~i~v 377 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALI--RAIADG----TGTEVIGI 377 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHH--HHHHHH----HTSCEEEC
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhH--HHHHhc----CCCceEEE
Confidence 7889999999999998877532 2333322 2689999999999975533221 111110 11469999
Q ss_pred eecCCCCHHHHHHHHHHhhh
Q 030008 162 SCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~ 181 (184)
||++|.|++++++.|.+.+.
T Consensus 378 SAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 378 SALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp BTTTTBSHHHHHHHHTHHHH
T ss_pred EECCCCCHHHHHHHHHHHHh
Confidence 99999999999999998875
No 126
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.92 E-value=3.2e-24 Score=167.56 Aligned_cols=152 Identities=14% Similarity=0.253 Sum_probs=115.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC---CCCCCCCccceeEEEEEeCcEEEEEEecCCch-hhH--------HhHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG---YSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP-RFR--------SMWERY 84 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~-~~~--------~~~~~~ 84 (184)
+..++|+++|.+|+|||||+|++++.. ....+.+|.......+..++..+.+|||||.. .+. .....+
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 355899999999999999999999765 34455667777777788888999999999987 442 234567
Q ss_pred hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeec
Q 030008 85 CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++.+|++++|+|++++.++.... .+ ..+ ..+|+++|+||+|+.+....+++..... ...+++++||+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAk 387 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-IL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISAL 387 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGG
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECC
Confidence 88999999999999887765532 22 222 2689999999999975434333333211 22469999999
Q ss_pred CCCCHHHHHHHHHHhhh
Q 030008 165 NSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~ 181 (184)
+|.|++++++.|.+.+.
T Consensus 388 tg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GTCCHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988654
No 127
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.92 E-value=9.2e-25 Score=164.01 Aligned_cols=158 Identities=20% Similarity=0.271 Sum_probs=117.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCc-EEEEEEecCCchh-------hHHhHHHHhccCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPR-------FRSMWERYCRAVS 89 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~-------~~~~~~~~~~~~~ 89 (184)
.+|+++|.+|+|||||++++++... ...+.+|.......+...+ ..+.+|||||... ....+...+..++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 4689999999999999999997653 3455677777777777664 7899999999543 2233444456799
Q ss_pred EEEEEEeCCC---cCcHHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeec
Q 030008 90 AIVYVVDAAD---PDNLSISRSELHDLLNKPS-LSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 90 ~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
++++|+|+++ .+++.....+..++..... ...+|+++|+||+|+.+..+ .+++.+.+.. ..+++++||+
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~ 312 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAV 312 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECC
Confidence 9999999988 6778777777766654421 25789999999999974321 1222232221 1468999999
Q ss_pred CCCCHHHHHHHHHHhhhcC
Q 030008 165 NSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~~~ 183 (184)
+++|++++++.|.+.+.+.
T Consensus 313 tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 313 TREGLRELLFEVANQLENT 331 (342)
T ss_dssp CSSTTHHHHHHHHHHHTSC
T ss_pred CCcCHHHHHHHHHHHHhhC
Confidence 9999999999999988754
No 128
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.92 E-value=6e-24 Score=163.50 Aligned_cols=164 Identities=19% Similarity=0.185 Sum_probs=113.8
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCC---Cccc----------e---------eEEEEEeCcEEEEEEecCC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMI---PTVG----------F---------NMRKVTKGNVTIKLWDLGG 73 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~---~t~~----------~---------~~~~~~~~~~~~~~~D~~G 73 (184)
.++.++|+++|++|+|||||+++|++........ .+.+ . ...........+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 3578999999999999999999999643322100 0000 0 0000011226899999999
Q ss_pred chhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC--cc
Q 030008 74 QPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK--SI 151 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~--~~ 151 (184)
++.+.......+..+|++++|+|+.++.++.....++..+... ...|+++|+||+|+.+.....+..+.+... ..
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999887666666665544322 235899999999998643322222222111 11
Q ss_pred cCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 152 TDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
....++++++||++|.|++++++.|.+.+..
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 1235689999999999999999999987653
No 129
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.92 E-value=1.4e-24 Score=151.13 Aligned_cols=159 Identities=19% Similarity=0.327 Sum_probs=119.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCc--EEEEEEecCCchhhHHhHHHHhccCCEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGN--VTIKLWDLGGQPRFRSMWERYCRAVSAIV 92 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 92 (184)
...++|+++|++|||||||++++.+..+.....+|.+... ..+..++ ..+.+||++|++++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 3468999999999999999999999888777777777443 4455554 45667999999988888888888999999
Q ss_pred EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHH
Q 030008 93 YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 93 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
+|+|+.+..++..+..|+..+... .....|+++|+||+|+.+... ..+....+ ....++.++++||+++.|+++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l----~~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF----AEKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHH----HHHcCCEEEEEeCCCCCCHHH
Confidence 999999988887776666554322 124689999999999864221 11111111 112345789999999999999
Q ss_pred HHHHHHHhh
Q 030008 172 VIDWLVKHS 180 (184)
Q Consensus 172 l~~~i~~~l 180 (184)
+++.|.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=3.7e-24 Score=166.29 Aligned_cols=152 Identities=19% Similarity=0.231 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchh---------hHHhHHHHhcc
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR---------FRSMWERYCRA 87 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~---------~~~~~~~~~~~ 87 (184)
.+|+++|.||+|||||+|+++++.. ...+..|....+..+...+..+.+|||||++. +..++..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 3799999999999999999997763 33445566666777888888999999999653 35567778999
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcce-eEEEeeecCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREV-CCFMISCKNS 166 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 166 (184)
+|++++|+|+.++.+... .++..++.. .++|+++|+||+|+.... ..+....+. ..+. +++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~-----~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELY-----SLGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG-----GGSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH-----hcCCCCEEEEeccCC
Confidence 999999999988654432 222233222 368999999999985320 111101111 1122 5799999999
Q ss_pred CCHHHHHHHHHHhhhc
Q 030008 167 TNIDSVIDWLVKHSKS 182 (184)
Q Consensus 167 ~~v~~l~~~i~~~l~~ 182 (184)
.|++++++.|.+.+.+
T Consensus 151 ~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 151 INLDTMLETIIKKLEE 166 (439)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccc
Confidence 9999999999988753
No 131
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.91 E-value=8.5e-24 Score=157.27 Aligned_cols=136 Identities=18% Similarity=0.283 Sum_probs=106.7
Q ss_pred CCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCC----------CcCcHHHHHHHHHHHhcCC
Q 030008 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DPDNLSISRSELHDLLNKP 117 (184)
Q Consensus 48 ~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~ 117 (184)
..+|+|.....+..++..+.+||++|+++++..|..++++++++++|+|++ +.+++.....++..+....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 457788888888889999999999999999999999999999999999654 6677888888899888776
Q ss_pred CCCCCcEEEEeeCCCCCCC------------------CCHHHHHhH----h-CcCcccCcceeEEEeeecCCCCHHHHHH
Q 030008 118 SLSGIPLLVLGNKIDKPGA------------------LSKQALTDE----M-GLKSITDREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 118 ~~~~~~~iiv~nK~D~~~~------------------~~~~~~~~~----~-~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
...++|+++++||+|+.+. ...++..+. + .........+.+++|||+++.||+.+|+
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 6678999999999998531 122222211 1 1111234567889999999999999999
Q ss_pred HHHHhhhcC
Q 030008 175 WLVKHSKSK 183 (184)
Q Consensus 175 ~i~~~l~~~ 183 (184)
.+.+.+.++
T Consensus 311 ~v~~~Il~~ 319 (327)
T 3ohm_A 311 AVKDTILQL 319 (327)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999887654
No 132
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=4.6e-24 Score=156.13 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=110.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCCCC--CccceeEEEEEeCcEEEEEEecCCchhhHH------hHHHHh--cc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSEDMI--PTVGFNMRKVTKGNVTIKLWDLGGQPRFRS------MWERYC--RA 87 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~~~~~~--~~ 87 (184)
+.++|+++|++|||||||+|++++..+..... .|.......+...+..+.+|||||+..+.. ....++ .+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 35799999999999999999999776543333 344455566777888999999999776543 344454 67
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA----LSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+|++++|+|+++.+ ....++..+... ..+|+++|+||+|+.+. .....+.+.+ +++++++||
T Consensus 82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~~~~Sa 147 (271)
T 3k53_A 82 ADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL--------GVPVIPTNA 147 (271)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH--------SSCEEECBG
T ss_pred CcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHc--------CCcEEEEEe
Confidence 99999999999853 223333444332 23899999999997431 1234444444 347999999
Q ss_pred cCCCCHHHHHHHHHHhhhc
Q 030008 164 KNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~ 182 (184)
++|.|++++++.+.+.+.+
T Consensus 148 ~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 133
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=3e-23 Score=157.29 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=115.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCcEEEEEEecCCchhh---------HHhHHHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF---------RSMWERYC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~---------~~~~~~~~ 85 (184)
...++|+++|.+|+|||||++++.+.... ..+..|.......+..++..+.+|||||.... ........
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 35689999999999999999999976642 23456666777777777889999999996432 12222344
Q ss_pred ccCCEEEEEEeCCCcC--cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeee
Q 030008 86 RAVSAIVYVVDAADPD--NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
..+|++++|+|++++. ++.....++..+.... .++|+++|+||+|+.+....++..... ....++++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence 5689999999998876 5666666666655432 168999999999997532222222211 123457999999
Q ss_pred cCCCCHHHHHHHHHHhhhc
Q 030008 164 KNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 164 ~~~~~v~~l~~~i~~~l~~ 182 (184)
++|+|++++++.|.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=2.3e-23 Score=161.86 Aligned_cols=159 Identities=19% Similarity=0.111 Sum_probs=107.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHh------------HHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM------------WER 83 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~------------~~~ 83 (184)
.++|+++|++|||||||+|++++... ...+..|.......+..++..+.+|||||..+.... ...
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~ 259 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD 259 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHH
Confidence 48999999999999999999997653 334445555556667777888999999997543221 234
Q ss_pred HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCcccCcceeEEEe
Q 030008 84 YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKSITDREVCCFMI 161 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 161 (184)
+++.+|++++|+|+.++.+.... .+...+.. .++|+++|+||+|+.+... .+++..............+++++
T Consensus 260 ~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT 334 (439)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEE
Confidence 66789999999999987655442 22222222 3689999999999975322 33333332222222345679999
Q ss_pred eecCCCCHHHHHHHHHHhhhc
Q 030008 162 SCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
||++|.|++++++.+.+.+.+
T Consensus 335 SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 135
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.91 E-value=5.7e-24 Score=165.44 Aligned_cols=152 Identities=16% Similarity=0.209 Sum_probs=102.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHH--------Hh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWER--------YC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~--------~~ 85 (184)
++.++|+++|++|+|||||+|+|++... ...+..|.......+..++..+.+|||||.......+.. ++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 4678999999999999999999997542 233444555555566778889999999997665443332 56
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
..+|++++|+|++++.+... ..++..+ . ..|+++|+||+|+.+..... .... .....+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l-~-----~~piivV~NK~Dl~~~~~~~----~~~~---~~~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV-K-----HRPLILVMNKIDLVEKQLIT----SLEY---PENITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH-T-----TSCEEEEEECTTSSCGGGST----TCCC---CTTCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc-c-----CCcEEEEEECCCCCcchhhH----HHHH---hccCCcEEEEECCC
Confidence 88999999999998765544 2333333 2 36999999999997542211 1111 11345799999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++++++.|.+.+..
T Consensus 368 g~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 KQGIDSLETAILEIVQT 384 (462)
T ss_dssp TBSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998754
No 136
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.91 E-value=4.6e-24 Score=160.77 Aligned_cols=134 Identities=19% Similarity=0.286 Sum_probs=104.8
Q ss_pred CCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC----------cCcHHHHHHHHHHHhcCCC
Q 030008 49 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------PDNLSISRSELHDLLNKPS 118 (184)
Q Consensus 49 ~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 118 (184)
.+|++.....+..++..+.+||++|+++++..|..++++++++|+|+|+++ .+++.....++..+.....
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 456777777788889999999999999999999999999999999999998 4568888889988887655
Q ss_pred CCCCcEEEEeeCCCCCCC-----------------CCHHHHHhHhC-----cCcc-cCcceeEEEeeecCCCCHHHHHHH
Q 030008 119 LSGIPLLVLGNKIDKPGA-----------------LSKQALTDEMG-----LKSI-TDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 119 ~~~~~~iiv~nK~D~~~~-----------------~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
..++|+++++||+|+.+. ...++...... .... ....+.+++|||+++.||+++|+.
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence 567999999999998421 22222222211 1100 134678999999999999999999
Q ss_pred HHHhhhc
Q 030008 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~l~~ 182 (184)
+.+.+.+
T Consensus 338 v~~~i~~ 344 (353)
T 1cip_A 338 VTDVIIK 344 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887754
No 137
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=4.8e-25 Score=156.26 Aligned_cols=118 Identities=25% Similarity=0.385 Sum_probs=93.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhcc----C
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA----V 88 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~----~ 88 (184)
..+.++|+++|++|+|||||++++.+..+.. ...++.+.. .....+.+|||||++.+...+..+++. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-----GGGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-----eeCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 3567999999999999999999999877643 233333222 245679999999999998888888877 8
Q ss_pred CEEEEEEeCC-CcCcHHHHHHHHHHHhcCC---CCCCCcEEEEeeCCCCCCCCC
Q 030008 89 SAIVYVVDAA-DPDNLSISRSELHDLLNKP---SLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 89 ~~ii~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~D~~~~~~ 138 (184)
+++++|+|++ +++++.....++..++... ...++|+++|+||+|+.+...
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 9999999999 8888888888887776432 225799999999999976554
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=3.9e-24 Score=166.04 Aligned_cols=150 Identities=19% Similarity=0.219 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCch--------hhHHhHHHHhccC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP--------RFRSMWERYCRAV 88 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~--------~~~~~~~~~~~~~ 88 (184)
.+|+++|.+|+|||||+|+|++.... ..+..|....+..+...+..+.+|||||++ .+..++..+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999976543 233344445555566667789999999985 5667778889999
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcce-eEEEeeecCCC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREV-CCFMISCKNST 167 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 167 (184)
|++++|+|+.++.+... .++..++.. .++|+++|+||+|+.+... + .. ... ..+. +++++||.+|.
T Consensus 84 d~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~----~~-~~~-~lg~~~~~~iSA~~g~ 150 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRA--N----IY-DFY-SLGFGEPYPISGTHGL 150 (436)
T ss_dssp SEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-------C----CC-SSG-GGSSCCCEECBTTTTB
T ss_pred CEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchh--h----HH-HHH-HcCCCCeEEEeCcCCC
Confidence 99999999998766543 344454443 4689999999999864311 0 01 111 1122 58999999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030008 168 NIDSVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~ 182 (184)
|++++++.+.+.+.+
T Consensus 151 gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 151 GLGDLLDAVAEHFKN 165 (436)
T ss_dssp THHHHHHHHHHTGGG
T ss_pred ChHHHHHHHHHhcCc
Confidence 999999999988863
No 139
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.91 E-value=3.2e-23 Score=159.67 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=102.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCC--ccceeEEEEEe---------------C--------cEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIP--TVGFNMRKVTK---------------G--------NVTIKL 68 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~--t~~~~~~~~~~---------------~--------~~~~~~ 68 (184)
++.++|+++|++++|||||+++|.+... .....+ |+...+..... . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 4679999999999999999999985432 222222 55443332211 1 268999
Q ss_pred EecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC----HHHHHh
Q 030008 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS----KQALTD 144 (184)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----~~~~~~ 144 (184)
|||||++.+.......+..+|++++|+|++++.......+.+..+... ...|+++|+||+|+.+... .+++.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999999888888888899999999999764222222333222111 2358999999999976432 122333
Q ss_pred HhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 145 EMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
..... .....+++++||++|+|++++++.|.+.+.
T Consensus 163 ~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 163 FVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHTTS--TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 22211 123568999999999999999999998765
No 140
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.90 E-value=1.9e-23 Score=163.72 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=110.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCC----C---C--CCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGG----Y---S--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAV 88 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~----~---~--~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 88 (184)
+.++|+++|++++|||||+++|++.. . . .....|+...+..+..++..+.+|||||++.+.......+..+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 57999999999999999999999765 1 1 1223455555555667788999999999999998899999999
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcc---cCcceeEEEeeecC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSI---TDREVCCFMISCKN 165 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~ 165 (184)
|++++|+|++++.... ..+.+..+ .. .++|+++|+||+|+.+....++..+++..... .....+++++||++
T Consensus 98 D~~ilVvda~~g~~~q-t~e~l~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~ 172 (482)
T 1wb1_A 98 DLALIVVDAKEGPKTQ-TGEHMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT 172 (482)
T ss_dssp CEEEEEEETTTCSCHH-HHHHHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred CEEEEEEecCCCccHH-HHHHHHHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcC
Confidence 9999999998753211 22222222 11 35888999999999853222222222211110 11256899999999
Q ss_pred CCCHHHHHHHHHHhhh
Q 030008 166 STNIDSVIDWLVKHSK 181 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~ 181 (184)
|+|++++++.|.+.+.
T Consensus 173 g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 173 GFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhc
Confidence 9999999999998764
No 141
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.90 E-value=2.7e-23 Score=160.19 Aligned_cols=160 Identities=16% Similarity=0.189 Sum_probs=109.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---CCC--CCCccceeEEEEEe------------------C-----cEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---SED--MIPTVGFNMRKVTK------------------G-----NVTIKL 68 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~--~~~t~~~~~~~~~~------------------~-----~~~~~~ 68 (184)
++.++|+++|++++|||||+++|++... ... ...|+...+..... + ...+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 5679999999999999999999985432 212 12255544333221 0 268999
Q ss_pred EecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH----HHHHh
Q 030008 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK----QALTD 144 (184)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~----~~~~~ 144 (184)
|||||++.+.......+..+|++++|+|++++.......+.+..+... ...|+++|+||+|+.+.... +++.+
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~ 164 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE 164 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHHH
Confidence 999999999888888888999999999999753222222222222111 23689999999999754321 12222
Q ss_pred HhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 145 EMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.+... .....+++++||++|.|++++++.|.+.++
T Consensus 165 ~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 165 FIEGT--VAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHhc--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 22211 123568999999999999999999998765
No 142
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.90 E-value=2.8e-23 Score=153.93 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=107.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCch-hhHHh--------HHHHh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP-RFRSM--------WERYC 85 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~-~~~~~--------~~~~~ 85 (184)
+..+|+++|++|+|||||+|++++.... ..+.+|.......+..++..+.++||||+. ..... ...++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 4558999999999999999999987652 334445544455566778899999999987 33222 23446
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhHhCcCcccCcceeEEEeeec
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG-ALSKQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
+.+|++++|+|+.+ +.....++...+.. .+.|+++|+||+|+.. .....+....+... .....++++||+
T Consensus 87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~---~~~~~~i~iSA~ 157 (301)
T 1ega_A 87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQ---MNFLDIVPISAE 157 (301)
T ss_dssp CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTT---SCCSEEEECCTT
T ss_pred hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHh---cCcCceEEEECC
Confidence 78899999999976 22333344433332 4689999999999975 11111222222111 111268999999
Q ss_pred CCCCHHHHHHHHHHhhhc
Q 030008 165 NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ~~~~v~~l~~~i~~~l~~ 182 (184)
++.|++++++.|...+++
T Consensus 158 ~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp TTTTHHHHHHHHHTTCCB
T ss_pred CCCCHHHHHHHHHHhCCc
Confidence 999999999999987654
No 143
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=2.3e-24 Score=165.75 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=107.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCc-EEEEEEecCCchhhHH-------hHHHHh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPRFRS-------MWERYC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~~~~-------~~~~~~ 85 (184)
.+.++|+++|++|+|||||+++++++.+. .....|.......+...+ ..+.+|||||+..+.. ....++
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 45689999999999999999999977652 334456666666666555 3899999999876532 256678
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecC
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKN 165 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (184)
..+|++++|+|+...+ ....++..+... ++|+++|+||+|+.+.... +..+.+.. ..+++++++||++
T Consensus 112 ~~aD~vllVvD~~~~~---~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~~----~~g~~v~~vSAkt 179 (423)
T 3qq5_A 112 YRADCGILVTDSAPTP---YEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYES----RYEAKVLLVSALQ 179 (423)
T ss_dssp TSCSEEEEECSSSCCH---HHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSSC----CTTCCCCCCSSCC
T ss_pred hcCCEEEEEEeCCChH---HHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHHH----HcCCCEEEEECCC
Confidence 8999999999993332 233444444332 6999999999999765443 22333322 2345799999999
Q ss_pred CCCHHHHHHHHHHhhhc
Q 030008 166 STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 166 ~~~v~~l~~~i~~~l~~ 182 (184)
|.|++++++.|.+.+.+
T Consensus 180 g~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 180 KKGFDDIGKTISEILPG 196 (423)
T ss_dssp TTSTTTHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHhhhh
Confidence 99999999999998843
No 144
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.90 E-value=2.7e-23 Score=155.08 Aligned_cols=134 Identities=19% Similarity=0.239 Sum_probs=103.6
Q ss_pred CCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCC----------CcCcHHHHHHHHHHHhcCC
Q 030008 48 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DPDNLSISRSELHDLLNKP 117 (184)
Q Consensus 48 ~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~ 117 (184)
..+|+|.....+..++..+.+||++|+++++..|..++++++++++|+|++ +.+++.....++..+....
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 345677777778888899999999999999999999999999999999998 6778888888998888766
Q ss_pred CCCCCcEEEEeeCCCCCCC-----------------CCHHHH----HhHh------C-cCcccC-----------cceeE
Q 030008 118 SLSGIPLLVLGNKIDKPGA-----------------LSKQAL----TDEM------G-LKSITD-----------REVCC 158 (184)
Q Consensus 118 ~~~~~~~iiv~nK~D~~~~-----------------~~~~~~----~~~~------~-~~~~~~-----------~~~~~ 158 (184)
...++|+++++||+|+... ...++. ...+ . ...... ..+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 5578999999999998531 011111 1111 1 111111 35789
Q ss_pred EEeeecCCCCHHHHHHHHHHhhh
Q 030008 159 FMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 159 ~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
++|||++..||+.+|+.+.+.+.
T Consensus 305 h~TsA~dt~nv~~vF~~v~~~Il 327 (340)
T 4fid_A 305 NPTNATDGSNIKRVFMLAVDVIM 327 (340)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCcHHHHHHHHHHHHHHH
Confidence 99999999999999999888764
No 145
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.90 E-value=6.3e-23 Score=159.18 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=105.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---------------------------------CCCCCCccceeEEEEEeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---------------------------------SEDMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---------------------------------~~~~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|++++|||||+++|+.... ......|+......+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 5679999999999999999999964311 0112345555666677788
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCc---H---HHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDN---L---SISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGA 136 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~ 136 (184)
..+.+|||||++++.......+..+|++++|+|+.++.. + ....+.+..... .++| +++|+||+|+...
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCccc
Confidence 899999999999999999999999999999999998642 1 122222222211 2466 9999999998642
Q ss_pred CC----HHHHHhHhC----cCccc-CcceeEEEeeecCCCCHHHHHH
Q 030008 137 LS----KQALTDEMG----LKSIT-DREVCCFMISCKNSTNIDSVID 174 (184)
Q Consensus 137 ~~----~~~~~~~~~----~~~~~-~~~~~~~~~Sa~~~~~v~~l~~ 174 (184)
.. .++....+. ..... ...++++++||++|.|++++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 11 122222211 11111 1256899999999999999654
No 146
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.90 E-value=6.9e-23 Score=154.83 Aligned_cols=133 Identities=21% Similarity=0.318 Sum_probs=95.4
Q ss_pred CccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC----------cCcHHHHHHHHHHHhcCCCC
Q 030008 50 PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------PDNLSISRSELHDLLNKPSL 119 (184)
Q Consensus 50 ~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~ 119 (184)
+|++.....+..++..+.+|||+|++.++..+..++++++++|+|+|+++ .+++.....++..+......
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 34555566677788999999999999999999999999999999999998 67888888899988876555
Q ss_pred CCCcEEEEeeCCCCCCC------------------CCHHHHHhHh-----CcCccc-CcceeEEEeeecCCCCHHHHHHH
Q 030008 120 SGIPLLVLGNKIDKPGA------------------LSKQALTDEM-----GLKSIT-DREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 120 ~~~~~iiv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
.++|+|+++||+|+.+. ...++..... ...... ...+.+++|||+++.||+++|+.
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~ 346 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD 346 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence 67999999999998521 2233322211 111111 34567999999999999999999
Q ss_pred HHHhhhc
Q 030008 176 LVKHSKS 182 (184)
Q Consensus 176 i~~~l~~ 182 (184)
+.+.+.+
T Consensus 347 v~~~i~~ 353 (362)
T 1zcb_A 347 VKDTILH 353 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 147
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.89 E-value=1.4e-22 Score=153.42 Aligned_cols=161 Identities=22% Similarity=0.261 Sum_probs=104.4
Q ss_pred eeE-EEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCcEEEEEEecCCc---------hhhHHhHHHHhc
Q 030008 19 EME-LSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGNVTIKLWDLGGQ---------PRFRSMWERYCR 86 (184)
Q Consensus 19 ~~~-v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~G~---------~~~~~~~~~~~~ 86 (184)
.++ |+++|.+|+|||||+|++++.... ..+.+|.+.....+...+..+.+|||||. +.+... ...+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHH-HHGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHH-HHHHH
Confidence 455 999999999999999999977652 34567777777778888889999999996 223332 23578
Q ss_pred cCCEEEEEEeCCCcC--cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHH--HHHhHhCcCcccCcceeEEEee
Q 030008 87 AVSAIVYVVDAADPD--NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQ--ALTDEMGLKSITDREVCCFMIS 162 (184)
Q Consensus 87 ~~~~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~S 162 (184)
.+|++++|+|++++. .......+ ..++........|+++|+||+|+.+....+ +....+.... .....+++++|
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~-~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~S 334 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSS-FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKEL-YSPIFDVIPIS 334 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHH-HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHH-CSCEEEEEECB
T ss_pred hCCEEEEEEECCCCcchHHHHHHHH-HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHh-cCCCCcEEEEE
Confidence 899999999998875 33332222 222222222468999999999997543111 1110000000 01234689999
Q ss_pred ecCCCCHHHHHHHHHHhhhc
Q 030008 163 CKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 163 a~~~~~v~~l~~~i~~~l~~ 182 (184)
|+++.|++++++.|.+.+..
T Consensus 335 A~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcc
Confidence 99999999999999887654
No 148
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.89 E-value=1.8e-23 Score=164.15 Aligned_cols=153 Identities=13% Similarity=0.084 Sum_probs=103.5
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC---------------------------------CCCCCCccceeEEEEEeC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY---------------------------------SEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~---------------------------------~~~~~~t~~~~~~~~~~~ 62 (184)
.++.++|+++|++|+|||||+++|++... ......|.......+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 36789999999999999999999975411 011233555566667778
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHH------HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSI------SRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
...+.+|||||++++......++..+|++++|+|+++++.+.. ..+.+. +.... ...|+++|+||+|+.+.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~~--~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSL--GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHHT--TCCCEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHHc--CCCcEEEEEECcCcccc
Confidence 8899999999999999999999999999999999998753321 122222 21111 23579999999999753
Q ss_pred CC--HHHHHhHhC----cCcccCcceeEEEeeecCCCCHHH
Q 030008 137 LS--KQALTDEMG----LKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 137 ~~--~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
.. .++...... ........++++++||++|+|+++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 21 122222221 111122357899999999999985
No 149
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.89 E-value=2.3e-22 Score=158.76 Aligned_cols=115 Identities=22% Similarity=0.207 Sum_probs=88.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC------------------CC------CCCCccceeEEEEEeCcEEEEEEecC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY------------------SE------DMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~------------------~~------~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+..+|+++|++|+|||||+++|+.... .. ....|.......+...+..+.+||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 4668999999999999999999962110 00 12334555666777888999999999
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
|+..+...+..+++.+|++++|+|+.++....... .+..... .++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCccc
Confidence 99999999999999999999999999876555443 3333322 36899999999999654
No 150
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=4.9e-23 Score=160.72 Aligned_cols=152 Identities=19% Similarity=0.222 Sum_probs=104.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCC--------chhhHHhHHHHhcc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGG--------QPRFRSMWERYCRA 87 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G--------~~~~~~~~~~~~~~ 87 (184)
..+|+++|.+|||||||+|+|++.... ..+..|...........+..+.+||||| ++.+......+++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 469999999999999999999976543 2333444444555556677899999999 77778888889999
Q ss_pred CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 88 VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 88 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+|++++|+|+.++.+ ....++...+.. .++|+++|+||+|+.+.. ....+ ...... ..++++||.+|.
T Consensus 103 ad~il~VvD~~~~~~--~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e----~~~lg~-~~~~~iSA~~g~ 170 (456)
T 4dcu_A 103 ADVIIFMVNGREGVT--AADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYD----FYSLGF-GEPYPISGTHGL 170 (456)
T ss_dssp CSEEEEEEESSSCSC--HHHHHHHHHHTT---CCSCEEEEEECC-----------CC----SGGGSS-SSEEECCTTTCT
T ss_pred CCEEEEEEeCCCCCC--hHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHH----HHHcCC-CceEEeeccccc
Confidence 999999999887533 334455555544 579999999999986321 11111 111111 136799999999
Q ss_pred CHHHHHHHHHHhhhc
Q 030008 168 NIDSVIDWLVKHSKS 182 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~ 182 (184)
|++++++.+.+.+.+
T Consensus 171 gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 171 GLGDLLDAVAEHFKN 185 (456)
T ss_dssp THHHHHHHHHTTGGG
T ss_pred chHHHHHHHHhhccc
Confidence 999999999887753
No 151
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3e-23 Score=144.26 Aligned_cols=125 Identities=25% Similarity=0.391 Sum_probs=91.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCC---CCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhcc----CC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSED---MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRA----VS 89 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~----~~ 89 (184)
.+.++|+++|++|||||||++++.+..+... ..++... ......+.+|||||++.+...+..++.. +|
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 120 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK 120 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-----eecCCeEEEEECCCCchHHHHHHHHHHhhcccCC
Confidence 5678999999999999999999998765431 2222221 1245679999999998886666666655 89
Q ss_pred EEEEEEeCC-CcCcHHHHHHHHHHHhcCC---CCCCCcEEEEeeCCCCCCCCCHHHHHhHh
Q 030008 90 AIVYVVDAA-DPDNLSISRSELHDLLNKP---SLSGIPLLVLGNKIDKPGALSKQALTDEM 146 (184)
Q Consensus 90 ~ii~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~iiv~nK~D~~~~~~~~~~~~~~ 146 (184)
++++|+|++ +.+++.....++..++... ...+.|+++|+||+|+.+....+++.+.+
T Consensus 121 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 121 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 999999999 7888888878777765432 22469999999999998766655554444
No 152
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.88 E-value=1e-21 Score=156.47 Aligned_cols=159 Identities=17% Similarity=0.173 Sum_probs=109.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC--CCCC-----C----------CCCccceeEEEEEe-----CcEEEEEEecCCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG--GYSE-----D----------MIPTVGFNMRKVTK-----GNVTIKLWDLGGQ 74 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~--~~~~-----~----------~~~t~~~~~~~~~~-----~~~~~~~~D~~G~ 74 (184)
++..+|+++|+.++|||||+++|+.. .... . ...|+......+.+ ..+.+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 45679999999999999999999852 1110 0 11122222222322 2378999999999
Q ss_pred hhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCc
Q 030008 75 PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDR 154 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
..+...+...+..+|++++|+|+.++........|..... .++|+++|+||+|+.... .++....+.... ...
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l-g~~ 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL-GLD 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS-CCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC-HHHHHHHHHHhh-CCC
Confidence 9999999999999999999999999877666655544432 368999999999997543 333322222111 111
Q ss_pred ceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 155 EVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
..+++++||++|.|++++++.|.+.++.
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 2258999999999999999999988764
No 153
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.88 E-value=7.8e-22 Score=146.05 Aligned_cols=172 Identities=15% Similarity=0.133 Sum_probs=108.0
Q ss_pred hHHHHHHHHHhhcc---cceeEEEEEcCCCCChHHHHHHHHcCCCCCC------CCCc----------------------
Q 030008 3 LWEAFLNWLRSLFF---KQEMELSLIGLQNAGKTSLVNVVATGGYSED------MIPT---------------------- 51 (184)
Q Consensus 3 ~~~~~~~~~~~~~~---~~~~~v~i~G~~~sGKStli~~l~~~~~~~~------~~~t---------------------- 51 (184)
+++++.+.++.... ...++|+++|.+|+|||||+|++++..+.+. ..|+
T Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~ 86 (299)
T 2aka_B 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF 86 (299)
T ss_dssp HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCccc
Confidence 44566666655432 2457999999999999999999998776311 1121
Q ss_pred --cc-------------------e----eEEEEEe-CcEEEEEEecCCch-------------hhHHhHHHHhccCCEEE
Q 030008 52 --VG-------------------F----NMRKVTK-GNVTIKLWDLGGQP-------------RFRSMWERYCRAVSAIV 92 (184)
Q Consensus 52 --~~-------------------~----~~~~~~~-~~~~~~~~D~~G~~-------------~~~~~~~~~~~~~~~ii 92 (184)
.. . ....+.. ...++.+|||||.. .+......+++.++.++
T Consensus 87 tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 166 (299)
T 2aka_B 87 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 166 (299)
T ss_dssp CCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEE
Confidence 00 0 0000111 13679999999953 34566777888888765
Q ss_pred -EEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 93 -YVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 93 -~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+|+++..+......++..+ .. .+.|+++|+||+|+.+... ..+..+.. .........+++++||++|.|++
T Consensus 167 l~v~d~~~~~~~~~~~~~~~~~-~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~ 241 (299)
T 2aka_B 167 LAVSPANSDLANSDALKIAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKK 241 (299)
T ss_dssp EEEEESSSCGGGCHHHHHHHHH-CT---TCSSEEEEEECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCB
T ss_pred EEEecCCcchhhhHHHHHHHHh-CC---CCCeEEEEEEccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccc
Confidence 799998764333322333333 22 4689999999999975433 22222110 01111123478899999999999
Q ss_pred HHHHHHHHh
Q 030008 171 SVIDWLVKH 179 (184)
Q Consensus 171 ~l~~~i~~~ 179 (184)
++++.|.+.
T Consensus 242 ~l~~~l~~~ 250 (299)
T 2aka_B 242 DITAALAAE 250 (299)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 999988763
No 154
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.88 E-value=1.4e-22 Score=153.91 Aligned_cols=146 Identities=11% Similarity=0.055 Sum_probs=108.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCc
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 100 (184)
+|+++|++++|||||+++|+ ....|++.....+...+..+.+|||||++++.......+..+|++++|+| ...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC
Confidence 99999999999999999998 34456666667777778899999999999998888888899999999999 543
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCcE-EEEee-CCCCCCCCCHH----HHHhHhCcCcccCcceeEEE--eeecC---CCCH
Q 030008 101 DNLSISRSELHDLLNKPSLSGIPL-LVLGN-KIDKPGALSKQ----ALTDEMGLKSITDREVCCFM--ISCKN---STNI 169 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~-iiv~n-K~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~v 169 (184)
......+++..+.. .++|. ++++| |+|+ +....+ ++.+..... ....+++++ +||++ +.|+
T Consensus 96 -~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 96 -LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp -CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTH
T ss_pred -CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCH
Confidence 34444444443322 24676 88999 9999 432222 222222111 113468999 99999 9999
Q ss_pred HHHHHHHHHhhh
Q 030008 170 DSVIDWLVKHSK 181 (184)
Q Consensus 170 ~~l~~~i~~~l~ 181 (184)
+++++.|.+.++
T Consensus 168 ~~L~~~l~~~~~ 179 (370)
T 2elf_A 168 DELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999999988765
No 155
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=6.9e-22 Score=157.69 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=105.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCC--CCC-----C----------CCCccceeEEEEEeC-----cEEEEEEecCCch
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGG--YSE-----D----------MIPTVGFNMRKVTKG-----NVTIKLWDLGGQP 75 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~--~~~-----~----------~~~t~~~~~~~~~~~-----~~~~~~~D~~G~~ 75 (184)
+-.+|+++|++++|||||+++|+... ... . ...|+......+.+. .+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999998521 110 0 111222222233332 4789999999999
Q ss_pred hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcc
Q 030008 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDRE 155 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
.+...+...+..+|++++|+|+.++........|..... .++|+++|+||+|+.+.. .++....+.... ....
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~l-g~~~ 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD-PERVAEEIEDIV-GIDA 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHHT-CCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc-HHHHHHHHHHHh-CCCc
Confidence 999999999999999999999998876666555544432 368999999999997543 222222221111 1111
Q ss_pred eeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 156 VCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.+++++||++|.|++++++.|.+.++.
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCCC
Confidence 248999999999999999999988764
No 156
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=1.4e-21 Score=151.52 Aligned_cols=153 Identities=13% Similarity=0.079 Sum_probs=102.8
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCC---CCC--------------------------------CCCccceeEEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGY---SED--------------------------------MIPTVGFNMRKVT 60 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~--------------------------------~~~t~~~~~~~~~ 60 (184)
.++.++|+++|++++|||||+++|++... ... ...|+...+..+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 35669999999999999999999985431 000 1123333444566
Q ss_pred eCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--
Q 030008 61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-- 138 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-- 138 (184)
.....+.+|||||++.+......++..+|++++|+|++++.... ...++...... ...|+++|+||+|+.+...
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL---GIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHH
Confidence 67789999999999999988888999999999999999875322 23333322211 1246999999999975321
Q ss_pred HHHHHhHhC----cCcccCcceeEEEeeecCCCCHHHH
Q 030008 139 KQALTDEMG----LKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 139 ~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
.++...... ........++++++||++|.|++++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 111222211 1111123468999999999999874
No 157
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=8.6e-22 Score=143.20 Aligned_cols=160 Identities=13% Similarity=0.119 Sum_probs=105.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC-CCCCCC---CccceeEEEEEeCcEEEEEEecCCchhh-----------HHhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG-YSEDMI---PTVGFNMRKVTKGNVTIKLWDLGGQPRF-----------RSMW 81 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~-~~~~~~---~t~~~~~~~~~~~~~~~~~~D~~G~~~~-----------~~~~ 81 (184)
.+.++|+++|++|+|||||++++++.. +..... .|.......+...+..+.+|||||+... ....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999766 332222 3445555666778889999999996543 2223
Q ss_pred HHHhccCCEEEEEEeCCCcCcH-HHHHHHHHHHhcCCCCCCCcEEEEee-CCCCCCCCCHHH------------HHhHhC
Q 030008 82 ERYCRAVSAIVYVVDAADPDNL-SISRSELHDLLNKPSLSGIPLLVLGN-KIDKPGALSKQA------------LTDEMG 147 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~n-K~D~~~~~~~~~------------~~~~~~ 147 (184)
..+++.+|++++|+|+.+.... .....++...... ....|.++|+| |+|+... .... +.....
T Consensus 100 ~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTT
T ss_pred HhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhC
Confidence 3467889999999999863322 1223344444321 11356677776 9999743 2222 222222
Q ss_pred cCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 148 LKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 148 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.. ...+..+++||++|.|++++++.|.+.+..
T Consensus 177 ~~---~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 177 GR---ICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TC---EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ce---EEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 11 000111789999999999999999998765
No 158
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.88 E-value=4.2e-22 Score=153.34 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=111.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC--------CCCC-----------CCCCccceeEEEEEeCcEEEEEEecCCchhh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG--------GYSE-----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~--------~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 77 (184)
++.++|+++|++++|||||+++|++. .+.. ....|.......+......+.+|||||++.+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 56799999999999999999999862 1110 1122444444556666789999999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCC-HH----HHHhHhCcCcc
Q 030008 78 RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALS-KQ----ALTDEMGLKSI 151 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~-~~----~~~~~~~~~~~ 151 (184)
.......+..+|++++|+|++++... ....++..+.. .++| +++|+||+|+.+... .+ ++.+.......
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 98888999999999999999987533 33444443322 2577 899999999974211 11 11111111111
Q ss_pred cCcceeEEEeeecCCCC------------------HHHHHHHHHHhhh
Q 030008 152 TDREVCCFMISCKNSTN------------------IDSVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~~~~~~~Sa~~~~~------------------v~~l~~~i~~~l~ 181 (184)
.....+++++||++|.| ++++++.|.+.++
T Consensus 164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 12246899999999987 8889988887664
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.88 E-value=6.1e-22 Score=152.01 Aligned_cols=159 Identities=14% Similarity=0.101 Sum_probs=109.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCC-------CCC-----------CCCCccceeEEEEEeCcEEEEEEecCCchhhHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGG-------YSE-----------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~-------~~~-----------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 79 (184)
+.++|+++|++++|||||+++|++.. +.. ....|+......+......+.+|||||++.+..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 57899999999999999999998631 110 112244444444556678999999999999988
Q ss_pred hHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCH-H----HHHhHhCcCcccC
Q 030008 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSK-Q----ALTDEMGLKSITD 153 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~~~ 153 (184)
.....+..+|++++|+|++++.... ..+.+..+.. .++| +++|+||+|+.+.... + ++.+.........
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 8888999999999999999865333 2333332222 2577 7899999999742111 1 1111211111112
Q ss_pred cceeEEEeeecCCCC----------HHHHHHHHHHhhh
Q 030008 154 REVCCFMISCKNSTN----------IDSVIDWLVKHSK 181 (184)
Q Consensus 154 ~~~~~~~~Sa~~~~~----------v~~l~~~i~~~l~ 181 (184)
..++++++||++|.| ++++++.|.+.++
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 246899999999764 8999999988765
No 160
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.88 E-value=5.2e-24 Score=167.71 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=111.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCC--ccceeEEEEEe-CcEEEEEEecCCchhhHHhHHHHhccCCEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIP--TVGFNMRKVTK-GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVY 93 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~--t~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 93 (184)
++.++|+++|++|+|||||+++|.+..+.....+ |.......+.. .+..+.+|||||++.+..++..++..+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4568899999999999999999986554322222 22232333333 34579999999999999988889999999999
Q ss_pred EEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhHhCcCc-ccCcceeEEEeeecCCCCHH
Q 030008 94 VVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS--KQALTDEMGLKS-ITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 94 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~ 170 (184)
|+|+.++....... .+..... .++|+++|+||+|+.+... .......+.... ......+++++||++|.|++
T Consensus 82 VVDa~dg~~~qt~e-~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQTVE-SIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHHHHH-HHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHHHHH-HHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 99999876444432 3333322 3689999999999864321 111111221111 11234689999999999999
Q ss_pred HHHHHHHHhhh
Q 030008 171 SVIDWLVKHSK 181 (184)
Q Consensus 171 ~l~~~i~~~l~ 181 (184)
++++.|...+.
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999988764
No 161
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=7.9e-22 Score=142.40 Aligned_cols=164 Identities=10% Similarity=0.058 Sum_probs=104.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCC----CCccceeEEEEEeCcEEEEEEecCCc--------hhhHHhHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDM----IPTVGFNMRKVTKGNVTIKLWDLGGQ--------PRFRSMWERY 84 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~--------~~~~~~~~~~ 84 (184)
...++|+++|.+|+|||||+|++++....... ..|..........++..+.+|||||. +.+...+..+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 56899999999999999999999987754321 24555666677788899999999995 3333333333
Q ss_pred h----ccCCEEEEEEeCCCcCcH-HHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC----cCcccCcc
Q 030008 85 C----RAVSAIVYVVDAADPDNL-SISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG----LKSITDRE 155 (184)
Q Consensus 85 ~----~~~~~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~ 155 (184)
+ +.+|++++|+|+++.... .....++...... ...+.|+++++||+|+... ..++...... .......+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCC-CHHHHHhhcccHHHHHHHHHcC
Confidence 3 899999999999853221 1223444444321 1135899999999999653 2222221100 00011112
Q ss_pred eeEEEeeecC-----CCCHHHHHHHHHHhhhc
Q 030008 156 VCCFMISCKN-----STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 156 ~~~~~~Sa~~-----~~~v~~l~~~i~~~l~~ 182 (184)
..++.+++.. +.|+++|++.|.+.+.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 2355555443 58999999999998875
No 162
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.87 E-value=1.4e-22 Score=157.17 Aligned_cols=152 Identities=18% Similarity=0.191 Sum_probs=99.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC--CCCC-------------------------------CCCCccceeEEEEEeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG--GYSE-------------------------------DMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|++++|||||+++|+.. .+.. ....|+......+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46789999999999999999999854 2211 12345555555677778
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHH-------HHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSIS-------RSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
..+.+|||||++++......++..+|++++|+|+.+ .+++.. .+.+...... ...|+++|+||+|+.+.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCCc
Confidence 899999999999999999999999999999999998 445432 2222211111 12468999999999763
Q ss_pred C-CH---HHHHhHhC----cCcccCcceeEEEeeecCCCCHHHH
Q 030008 137 L-SK---QALTDEMG----LKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 137 ~-~~---~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
. .. +....+.. ........++++++||++|+|+.++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 1 11 11122211 1111122468999999999999743
No 163
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.87 E-value=6.6e-22 Score=144.88 Aligned_cols=158 Identities=17% Similarity=0.247 Sum_probs=88.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCC-CC-------CCccceeEEEEE--eCc--EEEEEEecCCch-------hhH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSE-DM-------IPTVGFNMRKVT--KGN--VTIKLWDLGGQP-------RFR 78 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~-~~-------~~t~~~~~~~~~--~~~--~~~~~~D~~G~~-------~~~ 78 (184)
..++|+++|.+|+|||||+|+++...... .. .+|++....... .++ ..+.+|||||.. .+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 46899999999999999999988655432 22 456665544433 222 589999999962 233
Q ss_pred HhH-------HHHhcc-------------CCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 79 SMW-------ERYCRA-------------VSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 79 ~~~-------~~~~~~-------------~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
... ..++.. +|+++++++..... +......+...+.. .+|+++|+||+|+....+
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHH
Confidence 332 334433 67899999876532 22222223333332 699999999999975433
Q ss_pred HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 139 KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.......+... ....+++++++||.+++|++++++.|.+.++
T Consensus 162 ~~~~~~~i~~~-l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 162 CQQFKKQIMKE-IQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHH-HHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHH-HHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 33332222111 1223556889999999999999999987653
No 164
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.87 E-value=8e-22 Score=150.21 Aligned_cols=131 Identities=19% Similarity=0.202 Sum_probs=98.5
Q ss_pred cceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCC----------cCcHHHHHHHHHHHhcCCCCCC
Q 030008 52 VGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAAD----------PDNLSISRSELHDLLNKPSLSG 121 (184)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~ 121 (184)
++.....+..++..+.+|||+|+++++..+..++++++++++|+|+++ .+++.....|+..+.......+
T Consensus 205 iGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~ 284 (402)
T 1azs_C 205 SGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 284 (402)
T ss_dssp CSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSS
T ss_pred eeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCC
Confidence 334444556677899999999999999999999999999999999998 8899999999999887655578
Q ss_pred CcEEEEeeCCCCCCC-----C------------------------C---HHHHHhH----hCcCc----ccCcceeEEEe
Q 030008 122 IPLLVLGNKIDKPGA-----L------------------------S---KQALTDE----MGLKS----ITDREVCCFMI 161 (184)
Q Consensus 122 ~~~iiv~nK~D~~~~-----~------------------------~---~~~~~~~----~~~~~----~~~~~~~~~~~ 161 (184)
+|+++|+||+|+... . . .++.... +.... .....+.+++|
T Consensus 285 ~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~T 364 (402)
T 1azs_C 285 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT 364 (402)
T ss_dssp CCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEEC
T ss_pred CeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEE
Confidence 999999999997421 0 0 0111000 00000 01134678899
Q ss_pred eecCCCCHHHHHHHHHHhhhc
Q 030008 162 SCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 162 Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
||+++.||+++|+.+.+.+.+
T Consensus 365 SA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 365 CAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH
T ss_pred EeecCcCHHHHHHHHHHHHHH
Confidence 999999999999998887654
No 165
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=140.87 Aligned_cols=164 Identities=10% Similarity=0.067 Sum_probs=99.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCC----CCccceeEEEEEeCcEEEEEEecCCc-----------hhhHHhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDM----IPTVGFNMRKVTKGNVTIKLWDLGGQ-----------PRFRSMW 81 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~-----------~~~~~~~ 81 (184)
...++|+++|++|+|||||+|++++....... ..|.......+...+..+.+|||||. ..+...+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999987764433 23445556667778889999999993 2344445
Q ss_pred HHHhccCCEEEEEEeCCCcCcHH-HHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhC---cCcccCccee
Q 030008 82 ERYCRAVSAIVYVVDAADPDNLS-ISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMG---LKSITDREVC 157 (184)
Q Consensus 82 ~~~~~~~~~ii~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~ 157 (184)
....+.+|++++|+|+++..... ....++...+... ...|+++|+||+|+.+....+++..... .......+..
T Consensus 107 ~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~ 184 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDR 184 (239)
T ss_dssp HHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHHSSS
T ss_pred HhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCE
Confidence 55567789999999997654321 1122222222110 2369999999999875433321111110 0001111224
Q ss_pred EEEeeecC-----CCCHHHHHHHHHHhhhc
Q 030008 158 CFMISCKN-----STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 158 ~~~~Sa~~-----~~~v~~l~~~i~~~l~~ 182 (184)
++.+++.. ..++.++++.+...+.+
T Consensus 185 ~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 185 YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 66666553 36899999998887754
No 166
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.86 E-value=2.7e-22 Score=151.07 Aligned_cols=121 Identities=14% Similarity=0.240 Sum_probs=89.8
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCC----------CcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCC
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAA----------DPDNLSISRSELHDLLNKPSLSGIPLLVLGNKI 131 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 131 (184)
+...+.+|||+|+++++..+..++++++++++|+|++ +.+++.....++..+.......++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4578999999999999999999999999999999998 678899998999888776544679999999999
Q ss_pred CCCCCC----C-------------------HHHHHhHhCcCc------c-----cCcceeEEEeeecCCCCHHHHHHHHH
Q 030008 132 DKPGAL----S-------------------KQALTDEMGLKS------I-----TDREVCCFMISCKNSTNIDSVIDWLV 177 (184)
Q Consensus 132 D~~~~~----~-------------------~~~~~~~~~~~~------~-----~~~~~~~~~~Sa~~~~~v~~l~~~i~ 177 (184)
|+.+.. . .++......... . ....+.+++|||+++.||+++|+.+.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 984210 0 011111101000 0 02345578999999999999999998
Q ss_pred Hhhhc
Q 030008 178 KHSKS 182 (184)
Q Consensus 178 ~~l~~ 182 (184)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.8e-22 Score=160.79 Aligned_cols=153 Identities=12% Similarity=0.088 Sum_probs=104.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCC---------------------------------CCCccceeEEEEEeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSED---------------------------------MIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~---------------------------------~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|++|+|||||+++|++...... ...|+......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 4679999999999999999999985532110 2335555666677788
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC---cH---HHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD---NL---SISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 137 (184)
..+.+|||||++++.......+..+|++++|+|++++. ++ ......+... ... ...|+|+|+||+|+.+..
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~l--gi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSL--GIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HTT--TCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HHc--CCCeEEEEEecccccchh
Confidence 89999999999999998989999999999999998742 11 1122222222 111 224699999999997532
Q ss_pred C--HHHHHhHhC----cCcccCcceeEEEeeecCCCCHHHH
Q 030008 138 S--KQALTDEMG----LKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 138 ~--~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
. .++...... ........++++++||++|.|++++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1 111122211 1111223568999999999999865
No 168
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.86 E-value=8.8e-21 Score=149.87 Aligned_cols=115 Identities=22% Similarity=0.238 Sum_probs=83.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCC------------------------CCCCccceeEEEEEeCcEEEEEEecC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSE------------------------DMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~------------------------~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
++..+|+++|++|+|||||+++|+...... ....|+......+...+..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 467899999999999999999998531100 11112223344567788999999999
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
|+..+......++..+|++++|+|+.++.... ....+... ...++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~----~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT----RLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH----TTTTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH----HHcCCCEEEEEcCcCCccc
Confidence 99999888889999999999999998864322 22222222 2247899999999999754
No 169
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.86 E-value=7.2e-22 Score=157.68 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=105.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCCCC----CCCccceeEEEEE----------------eCcEEEEEEecCCchhh
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYSED----MIPTVGFNMRKVT----------------KGNVTIKLWDLGGQPRF 77 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~~~----~~~t~~~~~~~~~----------------~~~~~~~~~D~~G~~~~ 77 (184)
+.++|+++|++++|||||++++.+...... ..++++....... .....+.+|||||++.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 568999999999999999999986543321 2233443322211 11236999999999999
Q ss_pred HHhHHHHhccCCEEEEEEeCCCc---CcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--------------H
Q 030008 78 RSMWERYCRAVSAIVYVVDAADP---DNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK--------------Q 140 (184)
Q Consensus 78 ~~~~~~~~~~~~~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~--------------~ 140 (184)
...+...+..+|++++|+|++++ +++..+. .+.. .++|+++|+||+|+...... +
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 88888888899999999999984 3333222 2221 46899999999999642110 0
Q ss_pred -----------HHHhHhCcCcc----------cCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 141 -----------ALTDEMGLKSI----------TDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 141 -----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
++...+..... .....+++++||++|.|++++++.|...++
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11111111000 123468999999999999999999987764
No 170
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.85 E-value=1e-22 Score=159.12 Aligned_cols=157 Identities=25% Similarity=0.289 Sum_probs=106.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCC--CCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDM--IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYV 94 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 94 (184)
++..+|+++|++++|||||++++.+..+.... ..|.......+..++..+.+|||||++.+...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 45679999999999999999999865433222 1222222233444566899999999999988888888999999999
Q ss_pred EeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCc--cc--CcceeEEEeeecCCCCHH
Q 030008 95 VDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLKS--IT--DREVCCFMISCKNSTNID 170 (184)
Q Consensus 95 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~Sa~~~~~v~ 170 (184)
+|+.++..... ...+..... .++|+++++||+|+.+... +.+...+.... .. ....+++++||++|.|++
T Consensus 82 Vda~~g~~~qT-~e~l~~~~~----~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMPQT-IEAIQHAKA----AQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCTTT-HHHHHHHHH----TTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccHHH-HHHHHHHHh----cCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 99987532211 122222211 3689999999999964321 11111111110 01 123689999999999999
Q ss_pred HHHHHHHHh
Q 030008 171 SVIDWLVKH 179 (184)
Q Consensus 171 ~l~~~i~~~ 179 (184)
++++.|...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998753
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.85 E-value=2e-22 Score=157.43 Aligned_cols=155 Identities=19% Similarity=0.216 Sum_probs=90.2
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHcC--CCC-------------------------------CCCCCccceeEEEEEe
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVATG--GYS-------------------------------EDMIPTVGFNMRKVTK 61 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~~--~~~-------------------------------~~~~~t~~~~~~~~~~ 61 (184)
..++.++|+++|++++|||||+++|+.. .+. .....|+......+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 3467799999999999999999999741 110 0123455554455666
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC---cHH---HHHHHHHHHhcCCCCCCCc-EEEEeeCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD---NLS---ISRSELHDLLNKPSLSGIP-LLVLGNKIDKP 134 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~ 134 (184)
++..+.+|||||++.|.......+..+|++++|+|++++. +|. ...+.+..... .++| +++|+||+|+.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccCC
Confidence 7889999999999999988888899999999999999862 221 12222222211 3566 99999999996
Q ss_pred CCC-CH---HHHHhHhCcCc-----cc-CcceeEEEeeecCCCCHHHHH
Q 030008 135 GAL-SK---QALTDEMGLKS-----IT-DREVCCFMISCKNSTNIDSVI 173 (184)
Q Consensus 135 ~~~-~~---~~~~~~~~~~~-----~~-~~~~~~~~~Sa~~~~~v~~l~ 173 (184)
+.. .. ++...+..... .. ...++++++||++|.|+++++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 421 11 11111111111 11 125689999999999998754
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.85 E-value=1.1e-20 Score=158.03 Aligned_cols=160 Identities=16% Similarity=0.109 Sum_probs=108.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC-------CC-----------CCCCCccceeEEEEEeCcEEEEEEecCCchhhH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG-------YS-----------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR 78 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~-------~~-----------~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 78 (184)
++.++|+++|++++|||||+++|++.. +. .....|+......+......+.+|||||++++.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 457999999999999999999998631 00 011123333334455667899999999999999
Q ss_pred HhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCCCCH-H----HHHhHhCcCccc
Q 030008 79 SMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGALSK-Q----ALTDEMGLKSIT 152 (184)
Q Consensus 79 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 152 (184)
......+..+|++++|+|++++... ...+++..+.. .++| +|+|+||+|+.+.... + ++..........
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 8888899999999999999986432 23333333221 2577 7899999999752111 1 111112111111
Q ss_pred CcceeEEEeeecCC--------CCHHHHHHHHHHhhh
Q 030008 153 DREVCCFMISCKNS--------TNIDSVIDWLVKHSK 181 (184)
Q Consensus 153 ~~~~~~~~~Sa~~~--------~~v~~l~~~i~~~l~ 181 (184)
...++++++||++| .|++++++.|.+.++
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 23468999999999 479999999988664
No 173
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.85 E-value=2.4e-20 Score=139.04 Aligned_cols=176 Identities=16% Similarity=0.152 Sum_probs=103.1
Q ss_pred hHHHHHHHHHhhccc--ceeEEEEEcCCCCChHHHHHHHHcCCC-CCCCC-Cccce---eEEE-----------------
Q 030008 3 LWEAFLNWLRSLFFK--QEMELSLIGLQNAGKTSLVNVVATGGY-SEDMI-PTVGF---NMRK----------------- 58 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~v~i~G~~~sGKStli~~l~~~~~-~~~~~-~t~~~---~~~~----------------- 58 (184)
+++++.+.+...... ...+|+++|++|+|||||+|++++..+ +.... .|... ....
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~ 85 (315)
T 1jwy_B 6 VINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFL 85 (315)
T ss_dssp HHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEES
T ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhh
Confidence 345555555444322 457999999999999999999998765 22110 11110 0000
Q ss_pred ----------------------------------------EEeCcEEEEEEecCCchh-------------hHHhHHHHh
Q 030008 59 ----------------------------------------VTKGNVTIKLWDLGGQPR-------------FRSMWERYC 85 (184)
Q Consensus 59 ----------------------------------------~~~~~~~~~~~D~~G~~~-------------~~~~~~~~~ 85 (184)
......++.+|||||... +......++
T Consensus 86 ~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (315)
T 1jwy_B 86 HKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI 165 (315)
T ss_dssp SSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH
Confidence 111235799999999653 455677788
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeec
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCK 164 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 164 (184)
..+|++++|+|+.+..........+...+.. .+.|+++|+||+|+.+... ..+..... .........++..+|+.
T Consensus 166 ~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~sa~ 241 (315)
T 1jwy_B 166 KKQNAIIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTGR-VIPLTLGFIGVINRSQE 241 (315)
T ss_dssp HSTTEEEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTTS-SSCCTTCEEECCCCCHH
T ss_pred cCCCeEEEEEEecCcchhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhCC-CccCCCCeEEEecCChh
Confidence 9999999999984332110111112222222 4689999999999975433 12222110 01111222344455666
Q ss_pred C---CCCHHHHHHHHHHhhhc
Q 030008 165 N---STNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ~---~~~v~~l~~~i~~~l~~ 182 (184)
+ +.|++++++.+...+..
T Consensus 242 ~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 242 DIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp HHSSSCCHHHHHHHHHHHHHT
T ss_pred hhccCCCHHHHHHHHHHHHhC
Confidence 6 78999999998887754
No 174
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.85 E-value=1.6e-20 Score=132.09 Aligned_cols=160 Identities=20% Similarity=0.205 Sum_probs=97.6
Q ss_pred hcccceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE--EEEEeCcEEEEEEecCCchh----------hHHhH
Q 030008 14 LFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQPR----------FRSMW 81 (184)
Q Consensus 14 ~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~~----------~~~~~ 81 (184)
....+..+|+++|++|||||||++++++..+.....++.+... ..+...+ .+.+||+||... +....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 3456788999999999999999999987653223333433221 2222222 578999999732 23333
Q ss_pred HHHh---ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH----HHhHhCcCcccCc
Q 030008 82 ERYC---RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA----LTDEMGLKSITDR 154 (184)
Q Consensus 82 ~~~~---~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~ 154 (184)
..++ ..++++++++|+.++.+.... .+...+.. ...|+++|.||+|+.+....+. ...... ....
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~---~~~~ 171 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVL---AFNG 171 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG---GGCS
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHH---hcCC
Confidence 3444 467899999999887654321 11222211 3689999999999875432221 111111 1122
Q ss_pred ceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 155 EVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 155 ~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
.+.++++||+++.|++++++.|.+.+.+
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 3568899999999999999999887654
No 175
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.84 E-value=8.3e-22 Score=153.64 Aligned_cols=151 Identities=17% Similarity=0.185 Sum_probs=103.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC--CCCC-------------------------------CCCCccceeEEEEEeCc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG--GYSE-------------------------------DMIPTVGFNMRKVTKGN 63 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~ 63 (184)
++.++|+++|++++|||||+++|++. .+.. ....|+......+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 46799999999999999999999853 1110 12345666666777788
Q ss_pred EEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC---cHH---HHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD---NLS---ISRSELHDLLNKPSLSGIP-LLVLGNKIDKPGA 136 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~~ 136 (184)
..+.+|||||++.+.......+..+|++++|+|+.++. +|. .....+..... .++| +++|+||+|+.+.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccC
Confidence 89999999999999999999999999999999998752 111 22222222211 2455 9999999999742
Q ss_pred CC--HHHHHhHhC----cCcccCcceeEEEeeecCCCCHHH
Q 030008 137 LS--KQALTDEMG----LKSITDREVCCFMISCKNSTNIDS 171 (184)
Q Consensus 137 ~~--~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~v~~ 171 (184)
.. .++...+.. ........++++++||++|.|+++
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 11 112222221 111111246899999999999874
No 176
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.84 E-value=3.7e-23 Score=165.44 Aligned_cols=162 Identities=18% Similarity=0.148 Sum_probs=89.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCC--C-------------------------------CCCCCCccceeEEEEEeC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGG--Y-------------------------------SEDMIPTVGFNMRKVTKG 62 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~--~-------------------------------~~~~~~t~~~~~~~~~~~ 62 (184)
.++.++|+++|++++|||||+++|+... . ......|+......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3567899999999999999999996311 0 001223444445556666
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC---cH---HHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD---NL---SISRSELHDLLNKPSLSGIP-LLVLGNKIDKPG 135 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~~ 135 (184)
+..+.+|||||++.+.......+..+|++|+|+|++++. .+ ......+..... .++| +|+|+||+|+.+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence 788999999999998777777788999999999998642 11 112222222211 2454 999999999975
Q ss_pred CCC--H----HHHHhHh-CcCcccCcceeEEEeeecCCCCHH--------------HHHHHHHHhhh
Q 030008 136 ALS--K----QALTDEM-GLKSITDREVCCFMISCKNSTNID--------------SVIDWLVKHSK 181 (184)
Q Consensus 136 ~~~--~----~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~--------------~l~~~i~~~l~ 181 (184)
... . .++...+ .........++++++||++|.|++ .|++.|...+.
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 321 1 2222222 222223345689999999999998 78888876543
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.84 E-value=1.2e-19 Score=147.57 Aligned_cols=115 Identities=20% Similarity=0.195 Sum_probs=86.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC--CC------CC------------CCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG--GY------SE------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~--~~------~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
++..+|+++|++|+|||||+++++.. .+ .. ....|+......+...+..+.+|||||+..
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 46789999999999999999999831 11 00 233455555666777889999999999999
Q ss_pred hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 77 FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 77 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
+...+..+++.+|++++|+|+.++........|. .... .++|+++|+||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEEEEECCCcccC
Confidence 9999999999999999999999887665544333 2322 36899999999999754
No 178
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.84 E-value=6.9e-20 Score=149.08 Aligned_cols=163 Identities=17% Similarity=0.196 Sum_probs=106.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCC-CCCCccc-ee----------EEEE------------------------
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSE-DMIPTVG-FN----------MRKV------------------------ 59 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~-~~~~t~~-~~----------~~~~------------------------ 59 (184)
.+..++|+++|.+|+|||||+|+|++..... ...|+.. +. ...+
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 4578999999999999999999999776422 2223221 00 0000
Q ss_pred --------------------EeCc----EEEEEEecCCchh---hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHH
Q 030008 60 --------------------TKGN----VTIKLWDLGGQPR---FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHD 112 (184)
Q Consensus 60 --------------------~~~~----~~~~~~D~~G~~~---~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~ 112 (184)
.... ..+.+|||||... ....+..+++.+|++++|+|++++.+......+...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~ 225 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENY 225 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHH
Confidence 0000 3589999999654 345566788999999999999988766655433322
Q ss_pred HhcCCCCCCCcEEEEeeCCCCCCCC-----CHHH-------HHh----HhCcCcc----cCcceeEEEeeec--------
Q 030008 113 LLNKPSLSGIPLLVLGNKIDKPGAL-----SKQA-------LTD----EMGLKSI----TDREVCCFMISCK-------- 164 (184)
Q Consensus 113 ~~~~~~~~~~~~iiv~nK~D~~~~~-----~~~~-------~~~----~~~~~~~----~~~~~~~~~~Sa~-------- 164 (184)
+.. .+.|+++|+||+|+.... ..++ +.. ....... .....+++++||+
T Consensus 226 -l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 -IKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp -TTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred -HHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 222 367899999999986432 1111 111 1111000 0123469999999
Q ss_pred ------CCCCHHHHHHHHHHhhhc
Q 030008 165 ------NSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 165 ------~~~~v~~l~~~i~~~l~~ 182 (184)
++.|++++++.|.+.+.+
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred CchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887643
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.82 E-value=3.6e-19 Score=144.81 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=86.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc--CCCCC------------------CCCCccceeEEEEEeCcEEEEEEecCCch
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT--GGYSE------------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (184)
.++..+|+++|++|+|||||+++|+. +.+.. ....|+......+..++..+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 35678999999999999999999984 22110 12334445555677788999999999999
Q ss_pred hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
.+...+..+++.+|++++|+|+.++.+......| ..+.. .++|+++|+||+|+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH----cCCCEEEEEECCCcccc
Confidence 9988899999999999999999987665554333 32322 36899999999999754
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.81 E-value=1.5e-18 Score=140.78 Aligned_cols=114 Identities=20% Similarity=0.163 Sum_probs=85.2
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCCCCC-------------C-------CCCccceeEEEEEeCcEEEEEEecCCch
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGGYSE-------------D-------MIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~~~~-------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (184)
.++..+|+++|++|+|||||+++++...... . ...|.......+......+.+|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 4567899999999999999999998422110 0 0123334445566778999999999999
Q ss_pred hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 76 RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
.+...+..+++.+|++++|+|+.++..... ..++..... .++|+++|+||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH----ccCCEEEEecCCchh
Confidence 999999999999999999999987643322 233333332 368999999999987
No 181
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.81 E-value=2.6e-19 Score=130.31 Aligned_cols=118 Identities=15% Similarity=0.085 Sum_probs=79.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHH-------HHh-
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE-------RYC- 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~-------~~~- 85 (184)
.+.++|+++|++|+|||||+|++++.... .....|.......+..++..+.+|||||+..+..... .++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 36799999999999999999999987642 2233355556666778888999999999866532222 222
Q ss_pred -ccCCEEEEEEeCCCcCcHHHH-HHHHHHHhcCC-CCCCCcEEEEeeCCCCCC
Q 030008 86 -RAVSAIVYVVDAADPDNLSIS-RSELHDLLNKP-SLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 86 -~~~~~ii~v~d~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~iiv~nK~D~~~ 135 (184)
..+|++++|+|+.... +... ..++..+.... .....|+++|+||+|+.+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 2679999999887643 3222 23333222211 111259999999999853
No 182
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.81 E-value=2e-20 Score=141.73 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=78.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC-CCC--------CCccceeEEEE--EeCc--EEEEEEecCCc-------hh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS-EDM--------IPTVGFNMRKV--TKGN--VTIKLWDLGGQ-------PR 76 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~-~~~--------~~t~~~~~~~~--~~~~--~~~~~~D~~G~-------~~ 76 (184)
...++|+++|++|+|||||++++++.... ... .+|.+...... ...+ ..+.+|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45689999999999999999998754332 221 13444333222 2222 47999999998 44
Q ss_pred hHHhHH-------HHhccC-------------CEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 77 FRSMWE-------RYCRAV-------------SAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 77 ~~~~~~-------~~~~~~-------------~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
+..... .+++.+ ++++|+++.. ..++......+...+. ..+|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 443333 444332 3566666542 3344444433333332 46899999999999754
Q ss_pred CCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 137 LSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
.+...+..... ......+++++++||+++.| ++.+..+.+.+.
T Consensus 190 ~ev~~~k~~i~-~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 190 KERERLKKRIL-DEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHHH-HHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 32222111111 11223456899999999988 666666655543
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.81 E-value=2.9e-18 Score=139.72 Aligned_cols=115 Identities=18% Similarity=0.134 Sum_probs=83.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC--CCC------------------CCCCccceeEEEEEeCc-------EEEEEE
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG--YSE------------------DMIPTVGFNMRKVTKGN-------VTIKLW 69 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~--~~~------------------~~~~t~~~~~~~~~~~~-------~~~~~~ 69 (184)
++..+|+++|+.|+|||||+++|+... +.. ....|+......+.+.+ +.+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 456899999999999999999997421 110 11223333334455554 899999
Q ss_pred ecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 70 DLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 70 D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
||||+..+...+..+++.+|++++|+|+.++....... .+..... .++|+++|+||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHH----cCCCEEEEEeCCCcccc
Confidence 99999999989999999999999999999875443332 2332222 36899999999998653
No 184
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.81 E-value=4e-19 Score=134.44 Aligned_cols=171 Identities=16% Similarity=0.122 Sum_probs=103.1
Q ss_pred hHHHHHHHHHhhccc---ceeEEEEEcCCCCChHHHHHHHHcCCCCC-CC-CCcccee----------------------
Q 030008 3 LWEAFLNWLRSLFFK---QEMELSLIGLQNAGKTSLVNVVATGGYSE-DM-IPTVGFN---------------------- 55 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~---~~~~v~i~G~~~sGKStli~~l~~~~~~~-~~-~~t~~~~---------------------- 55 (184)
+++++.+.++..... ...+|+++|.+|+|||||+|+|++..+.+ .. ..|....
T Consensus 12 ~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~ 91 (353)
T 2x2e_A 12 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKF 91 (353)
T ss_dssp HHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCccc
Confidence 456676666654432 35799999999999999999999877631 11 1111000
Q ss_pred -----------------------------EEEEEe-CcEEEEEEecCCch-------------hhHHhHHHHhccCC-EE
Q 030008 56 -----------------------------MRKVTK-GNVTIKLWDLGGQP-------------RFRSMWERYCRAVS-AI 91 (184)
Q Consensus 56 -----------------------------~~~~~~-~~~~~~~~D~~G~~-------------~~~~~~~~~~~~~~-~i 91 (184)
...+.. ...++.+|||||.. .+..+...++..++ ++
T Consensus 92 tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii 171 (353)
T 2x2e_A 92 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 171 (353)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEE
Confidence 001111 13679999999952 34556667776655 55
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
++|+|++....-......+..+ . ..+.|+++|+||+|+.+... ....... ..........+++++||+++.|++
T Consensus 172 L~v~~a~~~~~~~~~~~i~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~l~~~~~~v~~~SA~~~~~i~ 246 (353)
T 2x2e_A 172 LAVSPANSDLANSDALKVAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKK 246 (353)
T ss_dssp EEEEETTSCGGGCHHHHHHHHH-C---TTCTTEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCHHHHHTTC
T ss_pred EEEecCCCccchhHHHHHHHHh-C---cCCCceEEEeccccccCcchhHHHHHhC-CcccccCCceEEEeCCcccccccc
Confidence 6666766432211222233333 2 24689999999999975433 2222221 111111223467889999999999
Q ss_pred HHHHHHHH
Q 030008 171 SVIDWLVK 178 (184)
Q Consensus 171 ~l~~~i~~ 178 (184)
++++.+.+
T Consensus 247 ~l~~~l~~ 254 (353)
T 2x2e_A 247 DITAALAA 254 (353)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 99998876
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.81 E-value=2.2e-19 Score=137.75 Aligned_cols=159 Identities=21% Similarity=0.240 Sum_probs=109.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCc-EEEEEEecCCchh-------hHHhHHHHhccC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGN-VTIKLWDLGGQPR-------FRSMWERYCRAV 88 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~D~~G~~~-------~~~~~~~~~~~~ 88 (184)
.-.|+++|++|||||||++++++... ...+.+|.......+...+ ..+.++|+||... +..........+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 35689999999999999999986542 2344556666666666554 7899999999632 122233445679
Q ss_pred CEEEEEEeCCCcCcHHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCC
Q 030008 89 SAIVYVVDAADPDNLSISRSELHDLLNKPS-LSGIPLLVLGNKIDKPGALSKQALTDEMGLKSITDREVCCFMISCKNST 167 (184)
Q Consensus 89 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 167 (184)
+.+++++|+. ...+..+..+...+..... ....|.++|+||+|.......+.+.+.. ...+.+++++||++++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGA 310 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCT
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCcc
Confidence 9999999998 5556665554444433211 1247999999999997541112222222 1224579999999999
Q ss_pred CHHHHHHHHHHhhhcC
Q 030008 168 NIDSVIDWLVKHSKSK 183 (184)
Q Consensus 168 ~v~~l~~~i~~~l~~~ 183 (184)
|++++++.|.+.+.+.
T Consensus 311 gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 311 GLPALKEALHALVRST 326 (416)
T ss_dssp THHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988653
No 186
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.79 E-value=4.7e-18 Score=124.16 Aligned_cols=119 Identities=11% Similarity=0.043 Sum_probs=79.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCchhhH-------HhHHHH--
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR-------SMWERY-- 84 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~-- 84 (184)
.+.++|+++|.+|+|||||+|++++.... .....|.......+...+..+.+|||||+..+. ..+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 35799999999999999999999977652 223334444455566778899999999976542 122222
Q ss_pred hccCCEEEEEEeCCCcCcHHHHH-HHHHHHhcCCC-CCCCcEEEEeeCCCCCCC
Q 030008 85 CRAVSAIVYVVDAADPDNLSISR-SELHDLLNKPS-LSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 85 ~~~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~iiv~nK~D~~~~ 136 (184)
...+|++++|+|++.. ++.... .++..+..... ....|+++|+||+|+.+.
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2468999999988653 233322 33333322111 112699999999998653
No 187
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.78 E-value=1.8e-18 Score=137.25 Aligned_cols=115 Identities=21% Similarity=0.237 Sum_probs=85.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC------------------C------CCCCCCccceeEEEEEeCcEEEEEEecC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG------------------Y------SEDMIPTVGFNMRKVTKGNVTIKLWDLG 72 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~------------------~------~~~~~~t~~~~~~~~~~~~~~~~~~D~~ 72 (184)
.+.-+|+|+|+.++|||||..+|+... + .....-|+......+.++++.++++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 355799999999999999999986110 1 1112235555566788899999999999
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
|+..|.....+.++-+|++|+|+|+..+-..+. ...|..... .++|.++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHH----hCCceEEEEecccchhc
Confidence 999999999999999999999999998743222 233333333 47999999999998643
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.77 E-value=1.2e-18 Score=132.19 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC-CCCC-Ccccee------------------------------------------
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS-EDMI-PTVGFN------------------------------------------ 55 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~-~~~~-~t~~~~------------------------------------------ 55 (184)
.+|+++|++|||||||+|++++..+. .... .|....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 49999999999999999999987652 2211 111100
Q ss_pred ------------EEEE-EeCcEEEEEEecCCchhh-------------HHhHHHHhccCCEEEEEEeCCCcCcHH-HHHH
Q 030008 56 ------------MRKV-TKGNVTIKLWDLGGQPRF-------------RSMWERYCRAVSAIVYVVDAADPDNLS-ISRS 108 (184)
Q Consensus 56 ------------~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~~~~-~~~~ 108 (184)
...+ ......+.+|||||...+ ......++.+++++++|+|..+.+... ....
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~ 194 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 194 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHH
Confidence 0001 112346899999997665 667778899999999999886544222 1122
Q ss_pred HHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHH
Q 030008 109 ELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 109 ~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 175 (184)
.+.. ....+.|+++|+||+|+.+... ....... .....+.+|+++|+.++.++++.+..
T Consensus 195 l~~~----~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 195 ISRE----VDPSGDRTFGVLTKIDLMDKGTDAVEILEG----RSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHH----SCTTCTTEEEEEECGGGCCTTCCSHHHHTT----SSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHH----hcccCCCEEEEEeCCccCCCcccHHHHHcC----ccccccCCeEEEEECChHHhccCCCH
Confidence 2222 2234689999999999975432 1221211 12234457899999998887765443
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.76 E-value=2.1e-20 Score=143.02 Aligned_cols=81 Identities=23% Similarity=0.314 Sum_probs=47.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEE---------------------eC---cEEEEEEecCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVT---------------------KG---NVTIKLWDLGG 73 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~---------------------~~---~~~~~~~D~~G 73 (184)
++|+++|.+|+|||||+|++++.... ..+++|......... .. ...+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999977632 334455554443321 11 36799999999
Q ss_pred chhh----HHhHH---HHhccCCEEEEEEeCCCc
Q 030008 74 QPRF----RSMWE---RYCRAVSAIVYVVDAADP 100 (184)
Q Consensus 74 ~~~~----~~~~~---~~~~~~~~ii~v~d~~~~ 100 (184)
.... ..+.. .+++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22222 346889999999999875
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.76 E-value=8.5e-19 Score=132.72 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=71.4
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 141 (184)
.+.++.++||||.... ....+..+|++++|+|+...+....+. ......|+++|+||+|+........
T Consensus 170 ~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHHH
Confidence 4578999999995432 223457899999999987664332211 1112469999999999864322222
Q ss_pred HHhHhCcC----c--ccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 142 LTDEMGLK----S--ITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 142 ~~~~~~~~----~--~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
....+... . ......+++++||++|.|++++++.|.+.+..
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 22222111 0 01123579999999999999999999887653
No 191
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.8e-17 Score=123.07 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=81.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEeCcEEEEEEecCCchh-------hHHhHHHHhccCCE
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR-------FRSMWERYCRAVSA 90 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~-------~~~~~~~~~~~~~~ 90 (184)
.+|+++|.||+|||||+|++++... ...+++|..+....+...+..+.++||||... ........++.+|+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 5899999999999999999997654 44678899999999999999999999999432 22345566789999
Q ss_pred EEEEEeCCCcCcH-HHHHHHHHHHhcCCCCCCCcEEEEeeCCCC
Q 030008 91 IVYVVDAADPDNL-SISRSELHDLLNKPSLSGIPLLVLGNKIDK 133 (184)
Q Consensus 91 ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~ 133 (184)
+++|+|+.++... ..+...+..+. ......|.+++.||.|.
T Consensus 153 il~vvD~~~p~~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 153 LFIILDVNKPLHHKQIIEKELEGVG--IRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHTT--EEETCCCCCEEEEECSS
T ss_pred cccccccCccHHHHHHHHHHHHHhh--HhhccCChhhhhhHhhh
Confidence 9999999986321 22222222221 11124566677777775
No 192
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.73 E-value=1.4e-16 Score=129.52 Aligned_cols=171 Identities=15% Similarity=0.111 Sum_probs=105.5
Q ss_pred hHHHHHHHHHhhcc---cceeEEEEEcCCCCChHHHHHHHHcCCC-CCCCC-Ccccee----------------------
Q 030008 3 LWEAFLNWLRSLFF---KQEMELSLIGLQNAGKTSLVNVVATGGY-SEDMI-PTVGFN---------------------- 55 (184)
Q Consensus 3 ~~~~~~~~~~~~~~---~~~~~v~i~G~~~sGKStli~~l~~~~~-~~~~~-~t~~~~---------------------- 55 (184)
+.+++.+.++.... -...+|+++|.+++|||||+|++++..+ +.... .|..+.
T Consensus 32 ~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~ 111 (772)
T 3zvr_A 32 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF 111 (772)
T ss_dssp HHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCB
T ss_pred HHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCccc
Confidence 34555555555532 2457999999999999999999998765 22211 121110
Q ss_pred -----------------------------EEEEEe-CcEEEEEEecCCchh-------------hHHhHHHHh-ccCCEE
Q 030008 56 -----------------------------MRKVTK-GNVTIKLWDLGGQPR-------------FRSMWERYC-RAVSAI 91 (184)
Q Consensus 56 -----------------------------~~~~~~-~~~~~~~~D~~G~~~-------------~~~~~~~~~-~~~~~i 91 (184)
...+.. ...++.++||||... .......++ ..+|++
T Consensus 112 ~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlI 191 (772)
T 3zvr_A 112 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 191 (772)
T ss_dssp CCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEE
Confidence 011111 123588999999433 233444555 567999
Q ss_pred EEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhHhCcCcccCcceeEEEeeecCCCCHH
Q 030008 92 VYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-QALTDEMGLKSITDREVCCFMISCKNSTNID 170 (184)
Q Consensus 92 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 170 (184)
++|+|++.+.........+..+ .. .+.|+++|+||+|+.+.... ..+.. ...........+++++||++|.|++
T Consensus 192 L~VVDAs~~~~~~d~l~ll~~L-~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~Gvd 266 (772)
T 3zvr_A 192 LAVSPANSDLANSDALKIAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKK 266 (772)
T ss_dssp EEEEETTSCSSSCHHHHHHHHH-CT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSE
T ss_pred EEEEcCCCCcchhHHHHHHHHH-Hh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccch
Confidence 9999998753322222223333 22 46899999999999864332 22221 1111112234568889999999999
Q ss_pred HHHHHHHH
Q 030008 171 SVIDWLVK 178 (184)
Q Consensus 171 ~l~~~i~~ 178 (184)
++++.+..
T Consensus 267 eL~eaI~~ 274 (772)
T 3zvr_A 267 DITAALAA 274 (772)
T ss_dssp EHHHHHHH
T ss_pred hHHHHHHH
Confidence 99999876
No 193
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.72 E-value=1.1e-17 Score=138.64 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=84.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC------------CCC------CCCCccceeEEEEEeC----------------
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG------------YSE------DMIPTVGFNMRKVTKG---------------- 62 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~------------~~~------~~~~t~~~~~~~~~~~---------------- 62 (184)
.+..+|+++|++|+|||||+++|+... +.+ ....|+......+.+.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 456899999999999999999998531 100 1122443333333332
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
+..+.+|||||+..+...+..+++.+|++++|+|+.++.++.....|.. ... .++|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~-~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH----cCCCeEEEEECCCcc
Confidence 6789999999999999999999999999999999999877766543333 222 368999999999986
No 194
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.72 E-value=3.5e-17 Score=129.99 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=80.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeC------------------------c-------
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKG------------------------N------- 63 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~------------------------~------- 63 (184)
...+|+++|.+|+|||||+|+|++..+. ....++........... +
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4579999999999999999999987753 22222221111100000 0
Q ss_pred ----------EEEEEEecCCchh-----------hHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCC
Q 030008 64 ----------VTIKLWDLGGQPR-----------FRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGI 122 (184)
Q Consensus 64 ----------~~~~~~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (184)
..+.+|||||... +......++..+|++++|+|+++.........++..+. ....
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~ 219 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR----GHED 219 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT----TCGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH----hcCC
Confidence 2589999999764 45667778899999999999987544444444444432 2358
Q ss_pred cEEEEeeCCCCCCCCCH
Q 030008 123 PLLVLGNKIDKPGALSK 139 (184)
Q Consensus 123 ~~iiv~nK~D~~~~~~~ 139 (184)
|+++|+||+|+.+..+.
T Consensus 220 pvilVlNK~Dl~~~~el 236 (550)
T 2qpt_A 220 KIRVVLNKADMVETQQL 236 (550)
T ss_dssp GEEEEEECGGGSCHHHH
T ss_pred CEEEEEECCCccCHHHH
Confidence 99999999999854333
No 195
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.70 E-value=2.5e-17 Score=124.30 Aligned_cols=108 Identities=16% Similarity=0.099 Sum_probs=64.5
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH--
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK-- 139 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~-- 139 (184)
.+.++.++||||..... ......+|++++|+|+..++....+.. .+ ...|.++|+||+|+.+....
T Consensus 165 ~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence 45689999999954222 334678999999999987642221111 11 23588999999998642111
Q ss_pred --HHHHhHhCcCcc--cCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 140 --QALTDEMGLKSI--TDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 140 --~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
..+...+..... .....+++++||++|.|++++++.|.+.+.
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 122222221111 112347899999999999999999988753
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.70 E-value=4.9e-16 Score=117.00 Aligned_cols=81 Identities=23% Similarity=0.289 Sum_probs=59.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeCc-----------------EEEEEEecCCchhhH-
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQPRFR- 78 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~~~- 78 (184)
.++|+++|.+|+|||||+|++++.... ..+++|++.....+...+ ..+.+|||||..+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 368999999999999999999986642 334556665554444433 579999999987653
Q ss_pred ------HhHHHHhccCCEEEEEEeCCC
Q 030008 79 ------SMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 79 ------~~~~~~~~~~~~ii~v~d~~~ 99 (184)
.....+++++|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 224456789999999999986
No 197
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.69 E-value=1.8e-17 Score=122.73 Aligned_cols=158 Identities=17% Similarity=0.259 Sum_probs=76.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC-CCCCCC--------CCccceeEE--EEE--eCcEEEEEEecCCc-------hh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG-GYSEDM--------IPTVGFNMR--KVT--KGNVTIKLWDLGGQ-------PR 76 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~-~~~~~~--------~~t~~~~~~--~~~--~~~~~~~~~D~~G~-------~~ 76 (184)
.-.++|+++|++|+|||||++++.+. .++... .++...... .++ .....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 35689999999999999999998864 332221 122221111 111 22367999999997 44
Q ss_pred hHHhHH-------HHhcc-------------CCEEEEEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 77 FRSMWE-------RYCRA-------------VSAIVYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 77 ~~~~~~-------~~~~~-------------~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+..... .++.. +++++++.+++.. ++.... ..+..+ . ...|+++|+||.|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l-~----~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAI-H----NKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHH-T----TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHH-H----hcCCEEEEEEeCCCCC
Confidence 433332 33322 2345666654321 232222 222222 1 3579999999999974
Q ss_pred CCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 136 ALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
..+.....+.. .......+++++++||+++ |++++|..+.+.+.+
T Consensus 170 ~~e~~~~~~~~-~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 170 LKERERLKKRI-LDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 32211111111 1112223467999999999 999999998887754
No 198
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.69 E-value=2.6e-17 Score=116.57 Aligned_cols=151 Identities=15% Similarity=0.192 Sum_probs=92.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCC--------CCCCcc--------ceeEEEE------------------EeC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSE--------DMIPTV--------GFNMRKV------------------TKG 62 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~--------~~~~t~--------~~~~~~~------------------~~~ 62 (184)
.+..+|+++|.+|||||||++++....... .+..+. +.....+ ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 356799999999999999999998542111 111100 1111111 113
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CCHH
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LSKQ 140 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~ 140 (184)
..++.++||+|+..... .+....+.+++|+|+.+.... ...+. .. ...|+++|+||+|+.+. ...+
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~-~~------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHP-EI------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCH-HH------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhh-hh------hhcCCEEEEecccCCcchhhHHH
Confidence 46789999999511110 011246889999999876421 11111 11 14788999999998642 2333
Q ss_pred HHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 141 ALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
+........ ...++++++||++|.|++++++.|.+.+.+
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 333333211 234579999999999999999999987754
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.68 E-value=4.2e-18 Score=137.51 Aligned_cols=158 Identities=21% Similarity=0.271 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHc--CCCCC-----C-------------CCCccceeEEEEEeCcEEEEEEecCCchhhHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT--GGYSE-----D-------------MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 79 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~--~~~~~-----~-------------~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 79 (184)
-+|+|+|+.++|||||..+|+. +.... . ..-|+......+.++++.++++||||+..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 3789999999999999999872 11100 0 01133334445677889999999999999999
Q ss_pred hHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhHhCcCc------
Q 030008 80 MWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSK---QALTDEMGLKS------ 150 (184)
Q Consensus 80 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~---~~~~~~~~~~~------ 150 (184)
...+.++-+|++++|+|+..+-..+ ....|..... .++|.++++||+|....... +++.+.+....
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccccee
Confidence 9999999999999999998763222 2233333332 36899999999998654322 12222111000
Q ss_pred --------------------------------------------------ccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 151 --------------------------------------------------ITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 151 --------------------------------------------------~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
....-.|++..||+++.|++.|++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 001124678899999999999999999876
Q ss_pred hc
Q 030008 181 KS 182 (184)
Q Consensus 181 ~~ 182 (184)
+.
T Consensus 238 p~ 239 (638)
T 3j25_A 238 YS 239 (638)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.66 E-value=1e-16 Score=116.42 Aligned_cols=118 Identities=14% Similarity=-0.009 Sum_probs=70.3
Q ss_pred EEEEEEecCCchhhHHh------HHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 030008 64 VTIKLWDLGGQPRFRSM------WERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137 (184)
Q Consensus 64 ~~~~~~D~~G~~~~~~~------~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 137 (184)
+++.++||||+...... ....+.. +++++++|+.........................|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 57999999998765332 2234455 8999999986544333332211111000011258999999999987532
Q ss_pred CHHHHHhHhCc------C-------------------cccCcceeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 138 SKQALTDEMGL------K-------------------SITDREVCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 138 ~~~~~~~~~~~------~-------------------~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
..+++.+.+.. . .......+++++||+++.|++++++.|.+.+..
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 22111111100 0 001122368999999999999999999887653
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.66 E-value=2.4e-16 Score=118.69 Aligned_cols=108 Identities=13% Similarity=0.107 Sum_probs=66.2
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 141 (184)
.+.++.++||||....... ....+|++++|+|+..++.+..+.. .. ...|.++|+||+|+........
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence 4578999999996654332 4578999999999976532211110 00 1368899999999974322221
Q ss_pred HHhHhC----cCcc--cCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 142 LTDEMG----LKSI--TDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 142 ~~~~~~----~~~~--~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
....+. .... .....+++++||++|.|++++++.|.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111111 1110 111346899999999999999999988654
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=8.8e-17 Score=123.47 Aligned_cols=156 Identities=15% Similarity=0.216 Sum_probs=71.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCCCC-CCC-------CCccceeEEE--EEe--CcEEEEEEecCCchhhH-------
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGGYS-EDM-------IPTVGFNMRK--VTK--GNVTIKLWDLGGQPRFR------- 78 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~~~-~~~-------~~t~~~~~~~--~~~--~~~~~~~~D~~G~~~~~------- 78 (184)
-.++|+++|++|+|||||++++++.... ... .+|....... +.. ....+++||++|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 3578999999999999999999976552 111 1222211111 111 22478999999975431
Q ss_pred Hh-------HHHH-----------hccCC--EEEEEEeCCCcCcHHHHH-HHHHHHhcCCCCCCCcEEEEeeCCCCCCCC
Q 030008 79 SM-------WERY-----------CRAVS--AIVYVVDAADPDNLSISR-SELHDLLNKPSLSGIPLLVLGNKIDKPGAL 137 (184)
Q Consensus 79 ~~-------~~~~-----------~~~~~--~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 137 (184)
.. ...+ +.+++ +++|+++++. .++.... .++..+ . .++|+|+|+||+|+....
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccHH
Confidence 11 1111 23333 4555555431 2333333 344444 2 268999999999997532
Q ss_pred CHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhh
Q 030008 138 SKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHS 180 (184)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 180 (184)
....+..... ......+++++++|+.++.++++++..+.+.+
T Consensus 184 ev~~~k~~i~-~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHH-HHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHH-HHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 2222111211 11122356789999999999999888877654
No 203
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.65 E-value=2.4e-17 Score=122.12 Aligned_cols=133 Identities=14% Similarity=0.083 Sum_probs=100.2
Q ss_pred HHHHHHHcCCCC-CCCCCccceeEEEEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcC-cHHHHHHHHH
Q 030008 34 SLVNVVATGGYS-EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPD-NLSISRSELH 111 (184)
Q Consensus 34 tli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~ 111 (184)
+++.+++.+.+. ..+.||++..+......+..+.+||+ ++++..++..+++++|++++|+|+++++ ++..+..|+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~ 109 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLV 109 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHH
Confidence 678888888887 77889999544322112237899999 8899888899999999999999999987 6777777777
Q ss_pred HHhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 112 DLLNKPSLSGIPLLVLGNKIDKPGALS---KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 112 ~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
.+.. .++|+++|+||+|+.+... ..++.+.+.. . +++++|||++|.|+++++..+..
T Consensus 110 ~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~-----~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 110 LAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSG-----L-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTT-----T-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhh-----h-CcEEEEECCCCcCHHHHHHHhcC
Confidence 6533 3699999999999975322 1223333321 1 57999999999999999987653
No 204
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.64 E-value=1.5e-15 Score=124.17 Aligned_cols=115 Identities=19% Similarity=0.176 Sum_probs=79.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC--------CCC------------CCCCCccceeEEEEEe-------CcEEEEE
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG--------GYS------------EDMIPTVGFNMRKVTK-------GNVTIKL 68 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~--------~~~------------~~~~~t~~~~~~~~~~-------~~~~~~~ 68 (184)
.++--+|+|+|+.++|||||..+|+.. ... ....-|+......+.+ +++.+++
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 345569999999999999999998711 110 1111133223333333 3688999
Q ss_pred EecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 69 WDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 69 ~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+||||+..|.....+.++-+|++|+|+|+..+-..+. ...+..... .++|.++++||+|...
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----HTCCEEEEEECSSSTT
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHH----cCCCeEEEEccccccC
Confidence 9999999999999999999999999999987642222 223333333 3699999999999854
No 205
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.62 E-value=5.7e-15 Score=111.76 Aligned_cols=80 Identities=21% Similarity=0.298 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCC--CCCCCCccceeEEEEEe---------------------CcEEEEEEecCCchh
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGY--SEDMIPTVGFNMRKVTK---------------------GNVTIKLWDLGGQPR 76 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~--~~~~~~t~~~~~~~~~~---------------------~~~~~~~~D~~G~~~ 76 (184)
++|+++|.+|+|||||+|++++... ...+.+|+..+...... .+..+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999997542 23344566554444322 235799999999754
Q ss_pred h-------HHhHHHHhccCCEEEEEEeCCC
Q 030008 77 F-------RSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 77 ~-------~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
. .......++.+|++++|+|+.+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3 3445556899999999999985
No 206
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.62 E-value=1.1e-15 Score=108.48 Aligned_cols=152 Identities=14% Similarity=0.198 Sum_probs=83.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeE----------------EEEEe-------------------
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNM----------------RKVTK------------------- 61 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~----------------~~~~~------------------- 61 (184)
.+.++|+++|++|||||||+++++...+.....++++... ..+..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 3568999999999999999999996644333333333211 01110
Q ss_pred -CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC--CC
Q 030008 62 -GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA--LS 138 (184)
Q Consensus 62 -~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~ 138 (184)
...++.++|++|...... .+-...+..+.++|+......... . ... ...|.++|+||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~--~-~~~------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEK--H-PGI------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTT--C-HHH------HTTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhh--h-hhH------hhcCCEEEEeccccCchhHHH
Confidence 011344455544211100 001122444555554322111000 0 011 13677999999998642 23
Q ss_pred HHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 139 KQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
.++....... ....++++++||++|.|++++++.|.+.+.+.
T Consensus 184 ~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 184 IKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp HHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 3333222211 12345799999999999999999999887654
No 207
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.62 E-value=3.5e-15 Score=103.17 Aligned_cols=172 Identities=19% Similarity=0.215 Sum_probs=112.4
Q ss_pred HHHhhcccceeEEEEEcCC-CCChHHHHHHHHcCCCCC----CCCC---ccc--eeE--------EEEE-----------
Q 030008 10 WLRSLFFKQEMELSLIGLQ-NAGKTSLVNVVATGGYSE----DMIP---TVG--FNM--------RKVT----------- 60 (184)
Q Consensus 10 ~~~~~~~~~~~~v~i~G~~-~sGKStli~~l~~~~~~~----~~~~---t~~--~~~--------~~~~----------- 60 (184)
++.++....+.+++++|+. ..=..+|+.+++..+... .+.+ -++ ..+ ..+.
T Consensus 7 ~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~ 86 (227)
T 3l82_B 7 FLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDR 86 (227)
T ss_dssp SSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC-------
T ss_pred HHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhh
Confidence 3455677889999999986 567779999998543110 0000 011 000 0000
Q ss_pred ------eCcEEEEEEecC------CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHH---HHHhcCCC-CCCCcE
Q 030008 61 ------KGNVTIKLWDLG------GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSEL---HDLLNKPS-LSGIPL 124 (184)
Q Consensus 61 ------~~~~~~~~~D~~------G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~ 124 (184)
....++-....| ||...+..|..|+.++|++|||+|+++.+.+. ....+ ..++.... ..+.|+
T Consensus 87 ~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapL 165 (227)
T 3l82_B 87 AREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPL 165 (227)
T ss_dssp ------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCE
T ss_pred hhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeE
Confidence 001223334444 78889999999999999999999999886554 44444 34444432 367999
Q ss_pred EEEeeCC-CCCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhcC
Q 030008 125 LVLGNKI-DKPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSK 183 (184)
Q Consensus 125 iiv~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~~ 183 (184)
+|.+||. |+.......++.+.+.+... ...|.+..|||++|+|+.+-+++|.+.+.++
T Consensus 166 LVlANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 166 LVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp EEEEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred EEEeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 9999995 78778888999999887765 4788999999999999999999999988765
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.56 E-value=1.2e-14 Score=109.11 Aligned_cols=154 Identities=12% Similarity=0.137 Sum_probs=89.5
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc------CCCC---CCCCCc------------cc-------eeEE----------
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT------GGYS---EDMIPT------------VG-------FNMR---------- 57 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~------~~~~---~~~~~t------------~~-------~~~~---------- 57 (184)
..+...++++|++|||||||++.+.+ +... ..+..+ ++ ....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 35678899999999999999999972 1110 000000 00 0000
Q ss_pred ----------EEEeCcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEE
Q 030008 58 ----------KVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVL 127 (184)
Q Consensus 58 ----------~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv 127 (184)
.+...+.++.++||||...... .....+|.+++++|+..++....+.... ...+.+++
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivv 199 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEE
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEE
Confidence 0112467899999999654332 2346899999999986543211110000 12466888
Q ss_pred eeCCCCCCCCC-----HHHHHhHhCcCccc--CcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 128 GNKIDKPGALS-----KQALTDEMGLKSIT--DREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 128 ~nK~D~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
+||+|+..... .+++.......... ....+++.+||+++.|++++++.|.+.+.
T Consensus 200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999753211 12222222111100 11246889999999999999999987654
No 209
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.51 E-value=5.2e-14 Score=101.85 Aligned_cols=112 Identities=20% Similarity=0.274 Sum_probs=87.3
Q ss_pred cCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHH---HHhcCCC-CCCCcEEEEeeC-CCCCCCCCHHHHHhH
Q 030008 71 LGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELH---DLLNKPS-LSGIPLLVLGNK-IDKPGALSKQALTDE 145 (184)
Q Consensus 71 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~iiv~nK-~D~~~~~~~~~~~~~ 145 (184)
.+||...+..|..|+.++|++|||+|+++.+.++ ....+. .++.... ..+.|++|.+|| .|+.......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 3578899999999999999999999999987654 333222 3333211 257999999997 588888888999999
Q ss_pred hCcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhhcCC
Q 030008 146 MGLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS 184 (184)
Q Consensus 146 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~~~~ 184 (184)
+++.... ..|.+..|||++|+|+.+-+++|.+.+.+++
T Consensus 273 L~L~~l~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 273 LHLNLLN-HPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TTGGGGC-SCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred cCCccCC-CcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 8876653 6889999999999999999999999987653
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.42 E-value=4.1e-13 Score=102.08 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=53.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC--CCCCCccceeEEEEEeC-----------------cEEEEEEecCCchhh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS--EDMIPTVGFNMRKVTKG-----------------NVTIKLWDLGGQPRF 77 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~--~~~~~t~~~~~~~~~~~-----------------~~~~~~~D~~G~~~~ 77 (184)
...++|+++|.+|+|||||+|++++.... ..+++|..+....+... ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 56789999999999999999999977542 34556666666655432 235999999997765
Q ss_pred HH-------hHHHHhccCCEEEEEEeCCCcC
Q 030008 78 RS-------MWERYCRAVSAIVYVVDAADPD 101 (184)
Q Consensus 78 ~~-------~~~~~~~~~~~ii~v~d~~~~~ 101 (184)
.. .+..+++++|++++|+|+.+.+
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 43 4567789999999999998643
No 211
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.25 E-value=1.7e-11 Score=96.20 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=87.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHH------cCCC---C-CCCCCcc-----------ceeEEE-----------------EE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA------TGGY---S-EDMIPTV-----------GFNMRK-----------------VT 60 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~------~~~~---~-~~~~~t~-----------~~~~~~-----------------~~ 60 (184)
...|+++|.+||||||++++|. +... . +...+.. +..... ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999988 2221 0 0001100 011111 01
Q ss_pred eCcEEEEEEecCCchhhH----HhHHHH--hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcE-EEEeeCCCC
Q 030008 61 KGNVTIKLWDLGGQPRFR----SMWERY--CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPL-LVLGNKIDK 133 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~----~~~~~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~D~ 133 (184)
..++++.++||||..... ...... ...+|.+++|+|+.......... ..+.. .+|+ .+|+||+|.
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a---~~~~~-----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQA---KAFKD-----KVDVASVIVTKLDG 252 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHH---HHHHH-----HHCCCCEEEECTTS
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHH---HHHHh-----hcCceEEEEeCCcc
Confidence 156789999999965321 111111 22689999999998764322222 22211 1564 889999998
Q ss_pred CCCCCH-HHHHhHhCcCc---------c-cCcceeEEEeeecCCCC-HHHHHHHHHHh
Q 030008 134 PGALSK-QALTDEMGLKS---------I-TDREVCCFMISCKNSTN-IDSVIDWLVKH 179 (184)
Q Consensus 134 ~~~~~~-~~~~~~~~~~~---------~-~~~~~~~~~~Sa~~~~~-v~~l~~~i~~~ 179 (184)
...... .......+... . .....+.+++|+..|.| ++++++.+.+.
T Consensus 253 ~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 754332 22222322111 0 00112345689999999 99999998765
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.22 E-value=2.3e-12 Score=97.89 Aligned_cols=124 Identities=11% Similarity=0.040 Sum_probs=74.4
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC------CC--CCCCCCccceeEEEEEeCcEEEEEEecCCchh
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG------GY--SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 76 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~------~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~ 76 (184)
+.+++.+.... +..+|+++|.+|+|||||+|++++. .. ...+..|.......+ + ..+.++||||...
T Consensus 150 ~~L~~~I~~~~--~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~ 224 (369)
T 3ec1_A 150 AKVMEAINRYR--EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL--E-SGATLYDTPGIIN 224 (369)
T ss_dssp HHHHHHHHHHH--TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC--S-TTCEEEECCSCCC
T ss_pred HHHHHHHHhhc--ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe--C-CCeEEEeCCCcCc
Confidence 45555554432 4568999999999999999999965 22 122334444333222 2 1389999999432
Q ss_pred hH--------HhHHHHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC
Q 030008 77 FR--------SMWERYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS 138 (184)
Q Consensus 77 ~~--------~~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~ 138 (184)
.. .....++ +..+.+++++++...-.+..+.. +......+.|+++++||.|..+...
T Consensus 225 ~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~ 291 (369)
T 3ec1_A 225 HHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTK 291 (369)
T ss_dssp CSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEE
T ss_pred HHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCccccccc
Confidence 21 1223333 66789999999853311111111 1122224689999999999876443
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.21 E-value=3.6e-12 Score=96.74 Aligned_cols=127 Identities=10% Similarity=0.027 Sum_probs=73.4
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCC---------CCCCCCccceeEEEEEeCcEEEEEEecCCch
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGY---------SEDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~---------~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (184)
+.+++++.... +..+|+++|.+|+|||||+|++++... ...+..|...... .... .+.++||||..
T Consensus 148 ~~L~~~l~~~~--~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~--~~~~-~~~liDtPG~~ 222 (368)
T 3h2y_A 148 AELADAIEYYR--GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDI--PLDE-ESSLYDTPGII 222 (368)
T ss_dssp HHHHHHHHHHH--TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEE--ESSS-SCEEEECCCBC
T ss_pred HHHHhhhhhhc--ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEE--EecC-CeEEEeCCCcC
Confidence 45556655432 457899999999999999999996521 1222333333322 2221 28999999953
Q ss_pred hh--------HHhHHHHh--ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 030008 76 RF--------RSMWERYC--RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141 (184)
Q Consensus 76 ~~--------~~~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 141 (184)
.. ......++ ...+.++++++....-....+.. +......+.|+++++||+|..+....+.
T Consensus 223 ~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~~~~ 293 (368)
T 3h2y_A 223 NHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTKLEK 293 (368)
T ss_dssp CTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEHHH
T ss_pred cHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccccHHH
Confidence 22 12222222 55688899998853211111110 1112224689999999999986554433
No 214
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.21 E-value=8.1e-11 Score=89.66 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=63.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCC---CCCCCCccceeEEEEEeCc-----------------EEEEEEecCCch-
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGY---SEDMIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQP- 75 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~---~~~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~- 75 (184)
++..+++++|++|+|||||+|++++... ...+++|+.+....+...+ ..+.++|+||..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4678999999999999999999998654 3345557776666665443 468999999932
Q ss_pred ------hhHHhHHHHhccCCEEEEEEeCCC
Q 030008 76 ------RFRSMWERYCRAVSAIVYVVDAAD 99 (184)
Q Consensus 76 ------~~~~~~~~~~~~~~~ii~v~d~~~ 99 (184)
.....+...++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344456667789999999999964
No 215
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.19 E-value=1.2e-11 Score=91.62 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=70.0
Q ss_pred chhhHHhHHHHhccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhHhCcC
Q 030008 74 QPRFRSMWERYCRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS---KQALTDEMGLK 149 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~ 149 (184)
++++..+...++.++|++++|+|+++++ ++..+..|+..+.. .++|+++|+||+|+.+... .++....+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~--- 138 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIY--- 138 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH---
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHH---
Confidence 5556555667899999999999999886 78877777765533 4699999999999975421 12222222
Q ss_pred cccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 150 SITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
...+.+++++||++|.|++++++.+..
T Consensus 139 --~~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 139 --RDAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp --HHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred --HHCCCeEEEEECCCCCCHHHHHhhccC
Confidence 112347999999999999999987643
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.17 E-value=5.9e-11 Score=91.08 Aligned_cols=137 Identities=11% Similarity=0.170 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCCCCC----C--ccceeEEEEEeCc--EEEEEEecCCchhh--------------
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSEDMI----P--TVGFNMRKVTKGN--VTIKLWDLGGQPRF-------------- 77 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~~~~----~--t~~~~~~~~~~~~--~~~~~~D~~G~~~~-------------- 77 (184)
++++++|++|||||||++.+++........ + +........+... ..++++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 459999999999999999999764321111 1 1111111122222 36899999984321
Q ss_pred HHhHHHHhc-------------cC--C-EEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHH
Q 030008 78 RSMWERYCR-------------AV--S-AIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQA 141 (184)
Q Consensus 78 ~~~~~~~~~-------------~~--~-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~ 141 (184)
...+..++. .+ | +++++.|+..+-+... ..+...+. .++|+|+|.||+|.....+...
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D--ieilk~L~----~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD--LVTMKKLD----SKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--HHHHHHTC----SCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--HHHHHHHh----hCCCEEEEEcchhccchHHHHH
Confidence 112222211 11 2 3556666655432222 22222322 4689999999999986544444
Q ss_pred HHhHhCcCcccCcceeEEEeee
Q 030008 142 LTDEMGLKSITDREVCCFMISC 163 (184)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~Sa 163 (184)
+...+... ....+++++.+|.
T Consensus 197 l~~~I~~~-L~~~gi~I~~is~ 217 (427)
T 2qag_B 197 FKIKITSE-LVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHH-HBTTBCCCCCCC-
T ss_pred HHHHHHHH-HHHcCCcEEecCC
Confidence 43333221 1223445555553
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.14 E-value=1.1e-09 Score=84.09 Aligned_cols=159 Identities=15% Similarity=0.212 Sum_probs=87.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccc-e----eEEEEEeCc-EEEEEEecCCchhh----HHhHHH-Hh
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVG-F----NMRKVTKGN-VTIKLWDLGGQPRF----RSMWER-YC 85 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~-~----~~~~~~~~~-~~~~~~D~~G~~~~----~~~~~~-~~ 85 (184)
.....++++|++|||||||+|.+.+...+....-+.+ . .....+... ..++++|+||.... ...... .+
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 4556899999999999999999996332211111000 0 011122221 25899999985322 222222 12
Q ss_pred ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC---------CCCCHHHHHhHhCcCc-----c
Q 030008 86 RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP---------GALSKQALTDEMGLKS-----I 151 (184)
Q Consensus 86 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~---------~~~~~~~~~~~~~~~~-----~ 151 (184)
...+..++ +|...+.. .-......+.. .++|+++|.||.|+. +.....++.+.+.... .
T Consensus 147 ~~~~~~~~-lS~G~~~k--qrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 147 YEYDFFII-ISATRFKK--NDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGCSEEEE-EESSCCCH--HHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCCccH--HHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33455554 77763221 11122222322 258999999999974 1223333333332221 0
Q ss_pred c-CcceeEEEeee--cCCCCHHHHHHHHHHhhhc
Q 030008 152 T-DREVCCFMISC--KNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 152 ~-~~~~~~~~~Sa--~~~~~v~~l~~~i~~~l~~ 182 (184)
. .....++.+|+ .++.|++++.+.+.+.+++
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 1 11235789999 6667799999999988765
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.05 E-value=3.7e-10 Score=82.73 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=69.4
Q ss_pred EEecCCch-hhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHh
Q 030008 68 LWDLGGQP-RFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEM 146 (184)
Q Consensus 68 ~~D~~G~~-~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~ 146 (184)
+-..||+. .....+...+.++|+++.|+|+.++.+... ..+..++ .++|.++|+||+|+.+....+.+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 55789976 456677888999999999999998865542 1223333 368999999999998642233333333
Q ss_pred CcCcccCcceeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 147 GLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 147 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
. ..+.+++++||.++.|++++++.+.+.+.
T Consensus 76 ~-----~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 E-----NQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp H-----TTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred H-----hcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 2 12346899999999999999998887764
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.02 E-value=4e-10 Score=85.50 Aligned_cols=101 Identities=19% Similarity=0.184 Sum_probs=67.3
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcc
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSI 151 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~ 151 (184)
..+++...+..+.+.++++++|+|+.+++ ......+..+. .++|+++|+||+|+.+... .+...+.... ..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~-~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRY-SA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHH-HH
Confidence 46888999999999999999999999853 11112223332 2689999999999975432 2222211110 01
Q ss_pred cCcc---eeEEEeeecCCCCHHHHHHHHHHhhh
Q 030008 152 TDRE---VCCFMISCKNSTNIDSVIDWLVKHSK 181 (184)
Q Consensus 152 ~~~~---~~~~~~Sa~~~~~v~~l~~~i~~~l~ 181 (184)
...+ .+++.+||++|.|++++++.|.+...
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 1112 26899999999999999999977543
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.02 E-value=2.6e-09 Score=77.71 Aligned_cols=115 Identities=17% Similarity=0.288 Sum_probs=62.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCCCCCC---------CCCcccee-EEE-EEeC--cEEEEEEecCCchh---------
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGGYSED---------MIPTVGFN-MRK-VTKG--NVTIKLWDLGGQPR--------- 76 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~~~~~---------~~~t~~~~-~~~-~~~~--~~~~~~~D~~G~~~--------- 76 (184)
+++++++|++|||||||+|.+++...+.. ...+.... ... .+.. ...++++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999985322111 01111111 111 1111 13689999998321
Q ss_pred -hHHh----HHHH--------------hccCCEEEEEEeCC-CcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCC
Q 030008 77 -FRSM----WERY--------------CRAVSAIVYVVDAA-DPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGA 136 (184)
Q Consensus 77 -~~~~----~~~~--------------~~~~~~ii~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~ 136 (184)
.... .... +..+++.++++|.. .+-.... ...+..+ .. . .++|+|+||+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L-~~---~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL-SK---V-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH-HT---T-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH-Hh---c-CcEEEEEeccccCCH
Confidence 1110 1111 12357889999965 3322222 2222333 22 2 899999999999865
Q ss_pred CCH
Q 030008 137 LSK 139 (184)
Q Consensus 137 ~~~ 139 (184)
.+.
T Consensus 156 ~e~ 158 (270)
T 3sop_A 156 EEK 158 (270)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.01 E-value=4.3e-10 Score=85.42 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=68.2
Q ss_pred CchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhHhCcCcc
Q 030008 73 GQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS-KQALTDEMGLKSI 151 (184)
Q Consensus 73 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~-~~~~~~~~~~~~~ 151 (184)
.++.+...+..+...++++++|+|+.++++ .....+..++ .++|+++|+||+|+.+... .+...+.... ..
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~-~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRR-MA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHH-HH
Confidence 478899999999899999999999998752 1112222332 2689999999999976432 2222221110 01
Q ss_pred cCcc---eeEEEeeecCCCCHHHHHHHHHHhhhc
Q 030008 152 TDRE---VCCFMISCKNSTNIDSVIDWLVKHSKS 182 (184)
Q Consensus 152 ~~~~---~~~~~~Sa~~~~~v~~l~~~i~~~l~~ 182 (184)
...+ .+++.+||++|.|++++++.|.+.+..
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~ 162 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYREG 162 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 1111 268999999999999999999876543
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.85 E-value=2.6e-09 Score=82.43 Aligned_cols=111 Identities=17% Similarity=0.198 Sum_probs=63.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc----CCCC------CCCCC-----------ccceeEEE-----------------EE
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT----GGYS------EDMIP-----------TVGFNMRK-----------------VT 60 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~----~~~~------~~~~~-----------t~~~~~~~-----------------~~ 60 (184)
...|+++|.+|+||||++..+.. .+.. +...+ ..+..... ..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999988762 1111 00000 00110110 01
Q ss_pred eCcEEEEEEecCCchhhHH----hHH--HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 61 KGNVTIKLWDLGGQPRFRS----MWE--RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 61 ~~~~~~~~~D~~G~~~~~~----~~~--~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
..++++.++||||...... ... .....+|.+++|+|+.......... ..+... ..+..+|+||.|..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~----~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA----TPIGSIIVTKLDGS 252 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS----CTTEEEEEECCSSC
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh----CCCeEEEEECCCCc
Confidence 1347899999999433211 111 1234579999999998764333323 233222 23557889999986
Q ss_pred CC
Q 030008 135 GA 136 (184)
Q Consensus 135 ~~ 136 (184)
..
T Consensus 253 ~~ 254 (443)
T 3dm5_A 253 AK 254 (443)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.83 E-value=6.5e-10 Score=85.90 Aligned_cols=153 Identities=13% Similarity=0.075 Sum_probs=81.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC------CC---CCCCC------------------------Cccc---eeEEEE-EeC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG------GY---SEDMI------------------------PTVG---FNMRKV-TKG 62 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~------~~---~~~~~------------------------~t~~---~~~~~~-~~~ 62 (184)
..|+++|++|+||||+++.+... .. ...+. ++.. .....+ ...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 57999999999999999988731 10 00000 0000 000000 014
Q ss_pred cEEEEEEecCCchhhHHhHH----HH--hccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCC-c-EEEEeeCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWE----RY--CRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGI-P-LLVLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~----~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~iiv~nK~D~~ 134 (184)
.+++.++||||......... .. +..+|.+++|+|+..+.. .......+.. .. | ..+|+||+|..
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE-----AVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT-----TSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh-----cccCCeEEEEeCCCCc
Confidence 57899999999654322111 11 125799999999976532 2222222221 24 5 78999999986
Q ss_pred CCCC-HHHHHhHhCcCcc----------cCcceeEEEeeecCCCC-HHHHHHHHHHhh
Q 030008 135 GALS-KQALTDEMGLKSI----------TDREVCCFMISCKNSTN-IDSVIDWLVKHS 180 (184)
Q Consensus 135 ~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~-v~~l~~~i~~~l 180 (184)
.... ...+....+.... .....+..++|+..|.| +..+++.+.+.+
T Consensus 252 ~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~ 309 (432)
T 2v3c_C 252 AKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV 309 (432)
T ss_dssp STTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS
T ss_pred cchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 4322 1122222221100 00111234567888887 776666654443
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.78 E-value=1.2e-08 Score=74.61 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=35.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCC---CCCCCccceeEEEEEeCcEEEEEEecCCch
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYS---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (184)
+..++|+++|.||+|||||+|++.+.... ..+..|..... +.. +..+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe-CCCEEEEECcCcC
Confidence 46689999999999999999999976532 12223333322 222 2368999999953
No 225
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.72 E-value=4.9e-08 Score=78.66 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcCC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~~ 43 (184)
.++++|+.|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 59999999999999999999653
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.71 E-value=4.7e-09 Score=76.02 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCCCCC---CCCCccceeEEEEEeCcEEEEEEecCCch
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGGYSE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQP 75 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~G~~ 75 (184)
++++++|.+|+|||||+|++.+..... .+..|..... +.. +..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQW--FSL-ENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCE--EEC-TTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEE--EEe-CCCEEEEECCCcc
Confidence 699999999999999999999765421 1122222221 222 2368999999954
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.71 E-value=3.7e-08 Score=78.65 Aligned_cols=69 Identities=25% Similarity=0.233 Sum_probs=44.7
Q ss_pred HHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcCCCC-CCCC----CccceeEEEE---EeCcEEEEEEecCCch
Q 030008 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYS-EDMI----PTVGFNMRKV---TKGNVTIKLWDLGGQP 75 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~~~~-~~~~----~t~~~~~~~~---~~~~~~~~~~D~~G~~ 75 (184)
..++.+.+. ..+..+|+++|.||+|||||+|++++.... .... .|.+...... ...+..+.++||||..
T Consensus 26 eal~~L~~i-~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 26 EALKILSAI-TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp HHHHHHHTC-CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred HHHHHHHhc-cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 344555543 356789999999999999999999976532 2222 2233221111 1245789999999954
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.56 E-value=3.1e-08 Score=76.40 Aligned_cols=66 Identities=17% Similarity=0.097 Sum_probs=40.9
Q ss_pred cEEEEEEecCCchh--h----HHhHHH--HhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 63 NVTIKLWDLGGQPR--F----RSMWER--YCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~G~~~--~----~~~~~~--~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
++++.++||||... . ...... ....++.+++|+|+...+........+.+. -.+..+|+||.|..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMDGT 251 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGGGC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccccc
Confidence 57899999999533 1 111111 122468999999998765433333333322 14567899999986
Q ss_pred C
Q 030008 135 G 135 (184)
Q Consensus 135 ~ 135 (184)
.
T Consensus 252 a 252 (433)
T 3kl4_A 252 A 252 (433)
T ss_dssp S
T ss_pred c
Confidence 3
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.55 E-value=4.2e-08 Score=71.02 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=60.4
Q ss_pred cCCchhh-HHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCCHHHHHhHhCcC
Q 030008 71 LGGQPRF-RSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALSKQALTDEMGLK 149 (184)
Q Consensus 71 ~~G~~~~-~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~~~~~~~~ 149 (184)
.||+... ...+...+.++|+++.|+|+.++.+..... +. ++ ++|.++|+||+|+.+....+++...+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-ll------~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-FS------RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-CT------TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-hc------CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 5776533 456777889999999999999886443211 11 11 6899999999999864322333333321
Q ss_pred cccCcceeEEEeeecCCCCHHHHHHHHHH
Q 030008 150 SITDREVCCFMISCKNSTNIDSVIDWLVK 178 (184)
Q Consensus 150 ~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 178 (184)
.+.++ ++||.++.|++++++.+..
T Consensus 74 ----~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 ----QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ----TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ----cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 23356 9999999999999887654
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.47 E-value=1.2e-07 Score=69.81 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=52.8
Q ss_pred CcEEEEEEecCCchh--hHH-hHH-----HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCC
Q 030008 62 GNVTIKLWDLGGQPR--FRS-MWE-----RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKID 132 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~--~~~-~~~-----~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D 132 (184)
..+++.++||||... ... ... .....+|.+++|+|+..... .......+.. ..+ ..+|+||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 567899999999766 322 221 12346899999999975422 2222233322 245 678899999
Q ss_pred CCCCCCHHHHHhHhCcCcccCcceeEEEeeecCCCCHHHH
Q 030008 133 KPGALSKQALTDEMGLKSITDREVCCFMISCKNSTNIDSV 172 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 172 (184)
.... ........ ...+.|+.+++ .|++++++
T Consensus 251 ~~~~--~g~~~~~~-----~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 251 GTAK--GGGALSAV-----AATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GCTT--HHHHHHHH-----HTTTCCEEEEE--CSSSTTCE
T ss_pred CCcc--hHHHHHHH-----HHHCcCEEEEe--CCCChhhc
Confidence 7532 11111111 11234566665 67777654
No 231
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.28 E-value=3.6e-07 Score=68.19 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.--++++|++||||||+++.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999887
No 232
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.18 E-value=5.4e-07 Score=66.56 Aligned_cols=84 Identities=17% Similarity=0.129 Sum_probs=55.7
Q ss_pred HHhccCCEEEEEEeCCCcCcHHH-HHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhHhCcCcccCccee
Q 030008 83 RYCRAVSAIVYVVDAADPDNLSI-SRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS----KQALTDEMGLKSITDREVC 157 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~ 157 (184)
..+.++|.+++|+|+.+|..-.. +..++... .. .++|.++|+||+|+.+... .+.+.+.+.. .+.+
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~-~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~-----~g~~ 152 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLV-EA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN-----IGYD 152 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHHHHHHHHHH-HT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH-----HTCC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHh-----CCCe
Confidence 46789999999999997753333 33333222 11 4688999999999986532 2333333321 2336
Q ss_pred EEEeeecCCCCHHHHHHH
Q 030008 158 CFMISCKNSTNIDSVIDW 175 (184)
Q Consensus 158 ~~~~Sa~~~~~v~~l~~~ 175 (184)
++.+||.++.|++++++.
T Consensus 153 v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EEECCHHHHTTCTTTGGG
T ss_pred EEEEecCCCCCHHHHHhh
Confidence 899999999998877653
No 233
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.09 E-value=2.4e-05 Score=60.60 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+..-|+|+|++++|||||+|++++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3456788999999999999999985
No 234
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.05 E-value=2.4e-06 Score=66.81 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.-.++++|+.|||||||++.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHH
Confidence 34578999999999999999877
No 235
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.01 E-value=4.3e-06 Score=61.75 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
.-.++++|+.||||||+++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3578899999999999999887
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.94 E-value=1.7e-05 Score=59.80 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=52.0
Q ss_pred HhccCCEEEEEEeCCCcC-cHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhHhCcCcccCcceeEE
Q 030008 84 YCRAVSAIVYVVDAADPD-NLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPGALS---KQALTDEMGLKSITDREVCCF 159 (184)
Q Consensus 84 ~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 159 (184)
.+.++|.+++|.+. .|. +...+..++...-. .++|.++|+||+|+.+... .+++...+ ...+.+++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y-----~~~G~~v~ 196 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIY-----RNIGYRVL 196 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHH-----HTTTCCEE
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHH-----HhCCCcEE
Confidence 35788999987654 454 33333333322211 3578899999999985432 12233332 22344689
Q ss_pred EeeecCCCCHHHHHHHH
Q 030008 160 MISCKNSTNIDSVIDWL 176 (184)
Q Consensus 160 ~~Sa~~~~~v~~l~~~i 176 (184)
++||.++.|++++...+
T Consensus 197 ~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 197 MVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp ECBTTTTBTHHHHHHHH
T ss_pred EEecCCCcCHHHHHHhc
Confidence 99999999999987653
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.92 E-value=7.3e-05 Score=57.82 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=39.9
Q ss_pred CcEEEEEEecCCchhhH-HhHH-----HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCc-EEEEeeCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFR-SMWE-----RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIP-LLVLGNKIDKP 134 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~-~~~~-----~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D~~ 134 (184)
.++++.++||||..... .... ..+..++.+++|+|+.......... ..+.. ..+ .-+|+||.|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~---~~f~~-----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTA---KAFNE-----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHH---HHHHH-----HSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHH---HHHhc-----cCCCeEEEEecCCCC
Confidence 46789999999965432 1111 1234678999999997654332222 22211 123 24689999986
Q ss_pred CC
Q 030008 135 GA 136 (184)
Q Consensus 135 ~~ 136 (184)
..
T Consensus 254 ~~ 255 (433)
T 2xxa_A 254 AR 255 (433)
T ss_dssp SC
T ss_pred cc
Confidence 44
No 238
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.80 E-value=2.1e-05 Score=53.30 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=28.5
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+.++..+....+.-.++++|++|+|||||++.+.+
T Consensus 24 ~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 24 LTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4445555555555667899999999999999998874
No 239
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.78 E-value=2e-05 Score=54.88 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=26.6
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..+...+... .++...|+|+|++|||||||++.+.+
T Consensus 9 ~~~~~~~~~~-~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 9 QGVLERLDPR-QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHSCTT-CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444333 35678899999999999999998873
No 240
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.75 E-value=7.1e-05 Score=50.67 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-++++|++|||||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4678999999999999999984
No 241
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.74 E-value=1.3e-05 Score=59.13 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
-.|+++|++||||||++..+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 468899999999999999776
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.74 E-value=1.9e-05 Score=60.78 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=37.9
Q ss_pred CcEEEEEEecCCchhhHH-hHH-----HHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFRS-MWE-----RYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~-~~~-----~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
..+++.++||||...... ... ...-.++.+++|+|+....... .....+... -...-+|+||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av---~~a~~f~~~----l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL---SVARAFDEK----VGVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHH---HHHHHHHHH----TCCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHH---HHHHHHHhc----CCceEEEEeCcCCcc
Confidence 457899999999643321 111 1123578899999997543222 222222211 112456889999753
No 243
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.69 E-value=4.8e-06 Score=65.16 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=49.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCCCCCCCCCccceeEEEEE----eCcEEEEEEecCCchh--hHHhH--------H
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPR--FRSMW--------E 82 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~~D~~G~~~--~~~~~--------~ 82 (184)
.....|+++|.+||||||+.++|...-.. ...++.......+. .......+||..|.+. .+..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999998743110 11122221111010 0112345788888632 23332 4
Q ss_pred HHhccCCEEEEEEeCCCcC
Q 030008 83 RYCRAVSAIVYVVDAADPD 101 (184)
Q Consensus 83 ~~~~~~~~ii~v~d~~~~~ 101 (184)
.++...++.++|+|+++..
T Consensus 116 ~~l~~~~G~~vV~D~tn~~ 134 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTT 134 (469)
T ss_dssp HHHHTTCCSEEEEESCCCS
T ss_pred HHHHhCCCCEEEEeCCCCC
Confidence 4555678888999999873
No 244
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.69 E-value=2.3e-05 Score=53.29 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+++++|++|||||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998874
No 245
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.67 E-value=6.3e-05 Score=52.01 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.++.+++......+...|+++|++||||||+++.+..
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45666676655445667899999999999999998873
No 246
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.64 E-value=0.00011 Score=54.63 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=38.3
Q ss_pred CcEEEEEEecCCchhhHHhH-------HHHh-----ccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEee
Q 030008 62 GNVTIKLWDLGGQPRFRSMW-------ERYC-----RAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGN 129 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~-------~~~~-----~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~n 129 (184)
..+++.++||||........ ...+ ..++.+++|+|+... ...+.. ...+... -...=+|.|
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~-~~~~~~~----~~i~GvVlt 262 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQ-AEEFSKV----ADVSGIILT 262 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHH-HHHHTTT----SCCCEEEEE
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHH-HHHHhhc----CCCcEEEEe
Confidence 45789999999965542111 1111 237889999999843 222222 2333211 122347789
Q ss_pred CCCCCC
Q 030008 130 KIDKPG 135 (184)
Q Consensus 130 K~D~~~ 135 (184)
|.|...
T Consensus 263 k~d~~~ 268 (320)
T 1zu4_A 263 KMDSTS 268 (320)
T ss_dssp CGGGCS
T ss_pred CCCCCC
Confidence 999753
No 247
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.63 E-value=0.00038 Score=47.91 Aligned_cols=69 Identities=9% Similarity=0.026 Sum_probs=45.5
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCC-CCCCcEEEEeeCCCCC
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPS-LSGIPLLVLGNKIDKP 134 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~nK~D~~ 134 (184)
..+++.++|+|+.. .......+..+|.++++....... ......+..+..... ....++.+|+|+.|..
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 34789999999865 334455667799999999887554 444444433322211 2346779999999964
No 248
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.55 E-value=4e-05 Score=52.97 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.-.++++|++|||||||++.+.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344689999999999999999875
No 249
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.54 E-value=4.7e-05 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
--++++|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999853
No 250
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.51 E-value=3.4e-05 Score=54.52 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=17.8
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.++.--++++|++||||||+++.+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3455678999999999999999998
No 251
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.50 E-value=0.00015 Score=53.19 Aligned_cols=37 Identities=16% Similarity=0.058 Sum_probs=27.3
Q ss_pred HHHHHHHHHhh---cccceeEEEEEcCCCCChHHHHHHHH
Q 030008 4 WEAFLNWLRSL---FFKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 4 ~~~~~~~~~~~---~~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+..+.+.+..+ ...+...|+|+|++|||||||.+.+.
T Consensus 13 ~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 13 IEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp HHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34555555543 23456889999999999999998776
No 252
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.49 E-value=7e-05 Score=51.66 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.--++++|++|||||||++.+.+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 34456899999999999999998853
No 253
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.48 E-value=7.6e-05 Score=51.90 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=22.7
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++.--|+++|++||||||+++.|...
T Consensus 5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 5 TERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred cCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 345567899999999999999999854
No 254
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.46 E-value=8.3e-05 Score=50.72 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.-.++++|++||||||+++.+.+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 45567899999999999999999854
No 255
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.42 E-value=8.1e-05 Score=50.77 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q 030008 22 LSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~ 41 (184)
++++|++||||||+++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999984
No 256
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.41 E-value=7.9e-05 Score=51.73 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=21.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++.--++++|+.|||||||++.+.+-
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345556899999999999999998753
No 257
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.38 E-value=7.8e-05 Score=50.20 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=19.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.--++++|++|||||||++.+.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc
Confidence 444567999999999999999643
No 258
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.37 E-value=9.2e-05 Score=51.92 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.-.++++|+.|||||||++.+.+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45567899999999999999998853
No 259
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.36 E-value=0.00012 Score=52.18 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+...|+++|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999988
No 260
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.34 E-value=0.00031 Score=46.68 Aligned_cols=28 Identities=29% Similarity=0.278 Sum_probs=23.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcCC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
.++.-.++++|+.|||||||++.+.+.-
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3566678999999999999999988643
No 261
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.34 E-value=0.00014 Score=50.40 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++...|+++|+.|||||||++.+.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999998874
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.33 E-value=0.00012 Score=49.10 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..|+++|++||||||+.+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 263
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.32 E-value=0.00014 Score=50.92 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...|+++|++||||||+.+.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998863
No 264
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.32 E-value=0.00011 Score=52.12 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3445689999999999999999873
No 265
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.31 E-value=0.00013 Score=50.28 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.--|+++|++|||||||+++|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4456889999999999999999853
No 266
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.30 E-value=0.00028 Score=47.64 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..-.+++.|++|+|||++++.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998874
No 267
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.30 E-value=0.00017 Score=49.79 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=22.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcCC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
.+...|+++|++||||||+++.+....
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345678999999999999999998543
No 268
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.29 E-value=0.00015 Score=49.47 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
-++++|++||||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999974
No 269
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.27 E-value=0.00017 Score=50.59 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.--++++|+.|||||||++.+.+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45567899999999999999998853
No 270
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.27 E-value=0.0002 Score=48.56 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+...|+++|.+||||||+.+.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999886
No 271
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.26 E-value=0.00014 Score=51.23 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 334578999999999999999873
No 272
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.26 E-value=0.00017 Score=48.17 Aligned_cols=20 Identities=15% Similarity=0.473 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCChHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVV 39 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l 39 (184)
..|+++|++||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 273
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.25 E-value=0.00027 Score=50.98 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=22.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.=.++++|+.|||||||++.+.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHH
Confidence 45666789999999999999998874
No 274
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.25 E-value=0.00017 Score=48.53 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999985
No 275
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.24 E-value=0.0002 Score=49.31 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+.-.|+++|++||||||+.+.+.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Confidence 455689999999999999999887
No 276
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.24 E-value=0.00017 Score=51.35 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
=.++++|+.|||||||++.+.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999984
No 277
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.24 E-value=0.00018 Score=49.78 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
....-|+++|++||||||+++++..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHH
Confidence 4556789999999999999999874
No 278
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.23 E-value=0.00019 Score=54.11 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHcCC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
-.++++|++|+|||||+|.+.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 468999999999999999999543
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.23 E-value=0.00017 Score=48.15 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999873
No 280
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.23 E-value=0.00023 Score=48.50 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
....|++.|.+||||||+.+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998863
No 281
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.22 E-value=0.00019 Score=49.04 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q 030008 22 LSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 22 v~i~G~~~sGKStli~~l~~~ 42 (184)
|+++|++|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999843
No 282
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.21 E-value=0.00052 Score=48.86 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.+.|++.|++||||||+.+.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999886
No 283
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.21 E-value=0.00034 Score=48.44 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=24.5
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..+..|++. .++.-.+++.|+||+||||++.++.+
T Consensus 46 ~~l~~~~~~--iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 46 GALKSFLKG--TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHT--CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHhc--CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 344445543 23344699999999999999887763
No 284
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.21 E-value=0.00024 Score=50.59 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=22.2
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++...|+++|+.|||||||++.+.+
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45667899999999999999998875
No 285
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.20 E-value=0.00018 Score=52.35 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 444679999999999999999984
No 286
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.20 E-value=0.00018 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344578999999999999999974
No 287
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.20 E-value=0.00023 Score=49.03 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.-.|+++|++||||||+++.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998864
No 288
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.20 E-value=0.00021 Score=49.69 Aligned_cols=21 Identities=33% Similarity=0.590 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
++|++.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999885
No 289
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.19 E-value=0.00018 Score=51.87 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 444679999999999999999984
No 290
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.19 E-value=0.00024 Score=52.37 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.7
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.=.++|+|++|||||||++.+.+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 46677899999999999999998873
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.19 E-value=0.00028 Score=48.60 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++...|+++|++||||||+.+.+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5567899999999999999998863
No 292
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.18 E-value=0.00045 Score=51.27 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...+-|+++|++|||||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998763
No 293
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.18 E-value=0.00028 Score=47.39 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+...|+++|++||||||+.+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999998864
No 294
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.18 E-value=0.00021 Score=50.73 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.=-++++|++|||||||++.+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 445567999999999999999877
No 295
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.17 E-value=0.00023 Score=49.53 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
++|+++|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999886
No 296
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.17 E-value=0.0002 Score=51.49 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3444689999999999999999984
No 297
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.17 E-value=0.0002 Score=51.78 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3445679999999999999999984
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.16 E-value=0.00018 Score=50.08 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.=.++++|+.|||||||++.+.+-
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34446899999999999999998854
No 299
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.16 E-value=0.00021 Score=48.95 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.++++|++|||||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999998874
No 300
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.16 E-value=0.00021 Score=50.48 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344689999999999999999984
No 301
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.15 E-value=0.00028 Score=48.51 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+...|++.|.+||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999753
No 302
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.15 E-value=0.00024 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 444689999999999999999984
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.15 E-value=0.00024 Score=48.96 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...|+++|.+||||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 304
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.15 E-value=0.00022 Score=51.50 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 444679999999999999999884
No 305
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.15 E-value=0.00023 Score=50.61 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3444689999999999999999983
No 306
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.14 E-value=0.00025 Score=50.81 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.=.++++|+.|||||||++.+.+-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4446799999999999999999853
No 307
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.14 E-value=0.00023 Score=50.69 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 444679999999999999999984
No 308
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.13 E-value=0.00036 Score=46.95 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..-.+++.|++|+|||++++.+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 455789999999999999998874
No 309
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.13 E-value=0.00023 Score=51.17 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3444679999999999999999984
No 310
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.13 E-value=0.00029 Score=48.58 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..|+++|.+||||||+.+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999875
No 311
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.13 E-value=0.0003 Score=49.14 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
....|+++|.+||||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999886
No 312
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.12 E-value=0.00025 Score=50.82 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3444689999999999999999974
No 313
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.11 E-value=0.00027 Score=51.15 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.=.++++|+.|||||||++.+.+-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34446799999999999999999853
No 314
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.11 E-value=0.00034 Score=47.58 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.+...|+++|.+||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999998754
No 315
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.11 E-value=0.00074 Score=46.41 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998874
No 316
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.11 E-value=0.00027 Score=49.46 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.=-++++|++|||||||++.+..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34555689999999999999999975
No 317
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.11 E-value=0.00031 Score=48.23 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998874
No 318
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.11 E-value=0.00031 Score=47.61 Aligned_cols=22 Identities=45% Similarity=0.537 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
...|+++|++||||||+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999886
No 319
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.11 E-value=0.00034 Score=51.79 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=22.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++..-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 35667899999999999999998874
No 320
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.11 E-value=0.00027 Score=50.37 Aligned_cols=25 Identities=12% Similarity=0.383 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4455789999999999999999884
No 321
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.10 E-value=0.00027 Score=52.05 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
.-.++++|++|||||||+|.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3467999999999999999998
No 322
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.10 E-value=0.00029 Score=47.43 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999874
No 323
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.09 E-value=0.0004 Score=48.03 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++...|+++|++||||||+.+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45568999999999999999999853
No 324
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.09 E-value=0.00036 Score=47.42 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|++.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 325
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.09 E-value=0.00035 Score=47.45 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 326
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.09 E-value=0.00034 Score=48.30 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.|+++|++||||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 327
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.08 E-value=0.0003 Score=51.22 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 444679999999999999999984
No 328
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.08 E-value=0.00033 Score=47.83 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+...|++.|.+||||||+.+.|.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 455689999999999999999886
No 329
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.08 E-value=0.00061 Score=47.81 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..-.+++.|++|+||||+++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998873
No 330
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.07 E-value=0.00028 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344679999999999999999984
No 331
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.07 E-value=0.00029 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.0
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3444689999999999999999874
No 332
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.06 E-value=0.0004 Score=47.69 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=22.9
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
..+...|+++|.+||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 345678999999999999999999864
No 333
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.06 E-value=0.0003 Score=46.24 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.-.++++|++|+|||||++.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 445688999999999999999884
No 334
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.06 E-value=0.00038 Score=48.38 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
+.|+++|+|||||+|...++.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999887
No 335
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.06 E-value=0.00041 Score=47.89 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999874
No 336
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.06 E-value=0.00037 Score=48.50 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
++|++.|.+||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999886
No 337
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.06 E-value=0.00038 Score=51.24 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
-.++++|++|||||||+|.+.+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 46799999999999999999854
No 338
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.05 E-value=0.00031 Score=50.64 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445689999999999999999984
No 339
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.05 E-value=0.00041 Score=48.04 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++...|++.|.+||||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998873
No 340
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.05 E-value=0.00074 Score=44.01 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 4 WEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.+.+.++.. ......|++.|++|+|||++.+.+...
T Consensus 10 ~~~~~~~~~~~-a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 10 INQYRRRLQQL-SETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHHH-TTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHH-hCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 44555555543 245678999999999999999998754
No 341
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.05 E-value=0.0004 Score=52.33 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.||||||+++.+.+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 333899999999999999998873
No 342
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.05 E-value=0.00041 Score=49.70 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.9
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.++...|+++|++||||||+.+.+.
T Consensus 24 ~~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 24 TAIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999887
No 343
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.05 E-value=9.9e-05 Score=54.48 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.-.++++|++|+|||||+|.+.+.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 3457899999999999999999853
No 344
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.04 E-value=0.00044 Score=47.04 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
...|++.|.+||||||+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 345
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.04 E-value=0.00042 Score=47.94 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+...|++.|.+||||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999998863
No 346
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.03 E-value=0.00064 Score=49.33 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
-++++|++|+|||||++.+.+
T Consensus 46 GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 499999999999999999985
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.02 E-value=0.00047 Score=47.44 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...+.|++.|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998863
No 348
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.01 E-value=0.00054 Score=51.96 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=22.1
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.=.++++|++||||||+++.+.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34555799999999999999999874
No 349
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.01 E-value=0.00035 Score=50.64 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3445689999999999999999984
No 350
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.01 E-value=0.00044 Score=48.60 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+...|++.|.+||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999886
No 351
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.01 E-value=0.00039 Score=50.19 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.=.++++|+.|||||||++.+.+-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 346789999999999999999854
No 352
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.01 E-value=0.00069 Score=52.16 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=21.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+.=-++++|+.||||||+++.+.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 3444689999999999999999884
No 353
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.01 E-value=0.00064 Score=50.20 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+...|+++|++|||||||++.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557899999999999999998874
No 354
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.99 E-value=0.00066 Score=53.63 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+..-.++++|++||||||+++.+++-
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44556999999999999999999853
No 355
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.98 E-value=0.00048 Score=45.85 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
No 356
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.98 E-value=0.00055 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.+.|++.|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999886
No 357
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.97 E-value=0.00021 Score=48.15 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.++++|++|||||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999873
No 358
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.97 E-value=0.00054 Score=47.73 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+.|++.|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
No 359
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.96 E-value=0.014 Score=41.80 Aligned_cols=66 Identities=5% Similarity=-0.104 Sum_probs=43.1
Q ss_pred CcEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCC
Q 030008 62 GNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKID 132 (184)
Q Consensus 62 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D 132 (184)
..+++.++|+|+... ......+..+|.++++...... +...+......+... ....++.+|+|+.+
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~-s~~~~~~~~~~l~~~--~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKW-AVESLDLFNFFVRKL--NLFLPIFLIITRFK 208 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTT-HHHHHHHHHHHHHTT--TCCCCEEEEEEEEC
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChH-HHHHHHHHHHHHHHH--hccCCEEEEEeccc
Confidence 347899999998543 3345566679999999988643 444444444333222 13467889999994
No 360
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.015 Score=45.00 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=23.2
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
-.++.--|++.|+||+|||+|.+++.+
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 345667899999999999999999984
No 361
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.95 E-value=0.00064 Score=46.15 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+...|+++|.+||||||+.+.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 456789999999999999999886
No 362
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.95 E-value=0.00047 Score=48.24 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=20.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
....|+++|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999886
No 363
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.94 E-value=0.0011 Score=45.69 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998874
No 364
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.94 E-value=0.00043 Score=46.52 Aligned_cols=20 Identities=30% Similarity=0.655 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
+|+++|++||||||+.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999886
No 365
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.94 E-value=0.00047 Score=51.93 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 334578999999999999999984
No 366
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.94 E-value=0.0006 Score=49.03 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...|+++|.+||||||+.+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 367
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.93 E-value=0.00038 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-+++++|++|||||||++.+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999884
No 368
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.92 E-value=0.0013 Score=47.51 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.1
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
......+++.|++|+|||++.+.+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456678999999999999999998753
No 369
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.91 E-value=0.00052 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+...|+++|.+||||||+.+.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 44578999999999999999887
No 370
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.91 E-value=0.00047 Score=47.16 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
....|++.|.+||||||+.+.|..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998873
No 371
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.91 E-value=0.0009 Score=47.75 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999853
No 372
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.91 E-value=0.00057 Score=48.37 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=20.4
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHH
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
....+.|++.|++||||||+.+.+.
T Consensus 6 ~~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 6 VSGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp ---CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999886
No 373
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.89 E-value=0.00062 Score=47.76 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
.|++.|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999886
No 374
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.88 E-value=0.0062 Score=42.16 Aligned_cols=68 Identities=10% Similarity=-0.056 Sum_probs=44.1
Q ss_pred CcEEEEEEecCCc-hhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCCC
Q 030008 62 GNVTIKLWDLGGQ-PRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKPG 135 (184)
Q Consensus 62 ~~~~~~~~D~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~~ 135 (184)
+.+++.++|+|+. ... .....+..+|.++++...... +.......+..+.... ..++.+|+|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~-~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDAL-ALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHH-HHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCch-hHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 3578999999986 433 234556778999999987643 3444444333332211 456889999998754
No 375
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.88 E-value=0.00068 Score=49.55 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...-|++.|++||||||+.+++..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999974
No 376
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.88 E-value=0.00077 Score=46.34 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+...|++.|.+||||||+.+.|.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999887
No 377
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.88 E-value=0.0027 Score=46.66 Aligned_cols=81 Identities=10% Similarity=0.087 Sum_probs=46.7
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCCCCCCHHH
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL-VLGNKIDKPGALSKQA 141 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~~~~~~~~ 141 (184)
.+++.++|+|+...... ....+..+|.++++...... +.......+..+.......+.+++ +|.|+++.. ...++
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~~~~~ 231 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTANDFD-SIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDR 231 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSSHH-HHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHH
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCcHH-HHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--HHHHH
Confidence 47899999987443221 22345778999999976532 344444444444332223456655 899999842 22344
Q ss_pred HHhHhC
Q 030008 142 LTDEMG 147 (184)
Q Consensus 142 ~~~~~~ 147 (184)
+.+.++
T Consensus 232 ~~~~~g 237 (307)
T 3end_A 232 FCKETN 237 (307)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 444443
No 378
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.88 E-value=0.00057 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 334578999999999999999984
No 379
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.87 E-value=0.00064 Score=46.22 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
No 380
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.87 E-value=0.00031 Score=51.83 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCchHHHHHHHHHc
Confidence 4455789999999999999999873
No 381
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.87 E-value=0.00058 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 344579999999999999999984
No 382
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.86 E-value=0.0006 Score=51.42 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHC
Confidence 334578999999999999999984
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.85 E-value=0.0008 Score=45.36 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+...|+++|.+||||||+.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998874
No 384
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.84 E-value=0.00062 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=20.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHc
Confidence 334578999999999999999984
No 385
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.84 E-value=0.00059 Score=49.95 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 344679999999999999999884
No 386
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.84 E-value=0.0016 Score=48.09 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=25.9
Q ss_pred HHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...+|+.+......-.+.+.|++|+|||+|+.++..
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 344555544222357899999999999999998874
No 387
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.84 E-value=0.00064 Score=51.33 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 344578999999999999999984
No 388
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.83 E-value=0.00048 Score=52.01 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=23.0
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.-.++++|+.|||||||++.+.+
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 45667899999999999999999984
No 389
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.83 E-value=0.00068 Score=47.41 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.--++++|++|+|||||++.+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHH
Confidence 344567899999999999999887
No 390
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.82 E-value=0.00027 Score=48.97 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q 030008 21 ELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~ 40 (184)
-|++.|.+||||||+++.|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999886
No 391
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.81 E-value=0.00057 Score=50.98 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=22.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++.-.++++|+.|||||||++.+.+-
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45558999999999999999999843
No 392
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.81 E-value=0.00078 Score=45.95 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
-|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 393
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.81 E-value=0.00057 Score=48.92 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
....|+++|++||||||+.+.+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 394
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.81 E-value=0.00069 Score=51.34 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.=-++++|+.|||||||++.+.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 33578999999999999999984
No 395
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.81 E-value=0.0016 Score=46.54 Aligned_cols=24 Identities=38% Similarity=0.387 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
....+++.|++|+|||++++.+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999874
No 396
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.80 E-value=0.0009 Score=44.95 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..+.++|.+|||||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999873
No 397
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.80 E-value=0.00073 Score=48.41 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
-|+++|++|||||||..++..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998863
No 398
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.80 E-value=0.004 Score=46.25 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=26.5
Q ss_pred HHHHHHHHhhc--ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 5 EAFLNWLRSLF--FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~--~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.+..++.... ......|++.|++|+|||++++.+...
T Consensus 39 ~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 39 KNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp HHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34455554332 133457999999999999999999743
No 399
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.79 E-value=0.00073 Score=51.21 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 344578999999999999999984
No 400
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.78 E-value=0.0013 Score=47.58 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999999853
No 401
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.77 E-value=0.0008 Score=44.94 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 402
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.77 E-value=0.00084 Score=45.32 Aligned_cols=21 Identities=14% Similarity=0.368 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
-.+|+|+.|||||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999863
No 403
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.77 E-value=0.0011 Score=44.93 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998863
No 404
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.77 E-value=0.00073 Score=50.42 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
-.++++|++|+|||||++.+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999884
No 405
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.77 E-value=0.00058 Score=46.06 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=16.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...|++.|.+||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 406
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.76 E-value=0.0012 Score=49.92 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcc-ccee--EEEEEcCCCCChHHHHHHHHcC
Q 030008 5 EAFLNWLRSLFF-KQEM--ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~~-~~~~--~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.+..++..... ...- .+++.|++|+||||+++.+.+.
T Consensus 27 ~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 27 QQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp HHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 445555544322 2223 7999999999999999998743
No 407
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.76 E-value=0.001 Score=46.96 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
....|++.|.+||||||+.+.|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999886
No 408
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.76 E-value=0.021 Score=44.32 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=19.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+-.-|.|+|+.++|||+|+|.++
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 345677799999999999999664
No 409
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.75 E-value=0.002 Score=46.40 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-.|++.|+||+|||.|..++.+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999885
No 410
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.75 E-value=0.0014 Score=47.52 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=22.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
...-.+++.|++|+|||++++++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999999743
No 411
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.74 E-value=0.00086 Score=45.35 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 412
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.71 E-value=0.0009 Score=51.03 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=.++++|+.|||||||++.+.+
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 444689999999999999999884
No 413
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.70 E-value=0.0013 Score=45.60 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+...|+++|.+||||||+.+.+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999876
No 414
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.70 E-value=0.00095 Score=43.41 Aligned_cols=36 Identities=8% Similarity=0.033 Sum_probs=26.1
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+.+.++... .....|++.|++|+|||++.+.+..
T Consensus 14 ~~l~~~~~~~~-~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 14 QEMNREVEAAA-KRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp HHHHHHHHHHH-TCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred HHHHHHHHHHh-CCCCcEEEECCCCccHHHHHHHHHH
Confidence 44555544332 4456799999999999999998863
No 415
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.70 E-value=0.0011 Score=44.17 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
No 416
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.69 E-value=0.00096 Score=48.79 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=21.5
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.=-++++|++|+|||||+..+..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 35555689999999999999998773
No 417
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.69 E-value=0.0012 Score=45.22 Aligned_cols=26 Identities=15% Similarity=0.411 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.-++.|+++|.+||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35688999999999999999988743
No 418
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.68 E-value=0.0013 Score=46.35 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.+..-|++.|++||||||+++.+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999998874
No 419
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.68 E-value=0.0018 Score=45.22 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.+++.|++|+||||+++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998874
No 420
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.68 E-value=0.00058 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCccHHHHHHHHHc
Confidence 444578999999999999999984
No 421
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.67 E-value=0.0012 Score=48.56 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.-.++++|+.||||||+++.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 34578899999999999999887
No 422
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.66 E-value=0.00088 Score=47.21 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
++..-|++.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999998754
No 423
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.66 E-value=0.0011 Score=45.99 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.--++++|++|+|||||+..+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4555689999999999999999985
No 424
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.65 E-value=0.0019 Score=47.36 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...-.|++.|++|+|||++++.+.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 4556799999999999999999984
No 425
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.64 E-value=0.0013 Score=46.92 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...+.|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 426
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.63 E-value=0.0011 Score=46.64 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.2
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.--++++|++|+|||||+..+..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 34556789999999999999999885
No 427
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.63 E-value=0.0024 Score=46.77 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=19.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
....+++.|++|+|||++.+.+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 44579999999999999998665
No 428
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.63 E-value=0.0029 Score=47.54 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcc-cceeEEEEEcCCCCChHHHHHHHH
Q 030008 4 WEAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 4 ~~~~~~~~~~~~~-~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
.+.+++.+..... .+..+|+++|++|+||||+.+.+.
T Consensus 8 ~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 8 ADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp HHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHH
Confidence 4555555543332 234679999999999999998665
No 429
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.62 E-value=0.0018 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
++++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988743
No 430
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.022 Score=43.93 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=24.9
Q ss_pred HHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 11 LRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 11 ~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++..-.+..--|++.|+||+|||+|.+++.+
T Consensus 208 f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 208 YEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp HHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred HHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 3334445667899999999999999999984
No 431
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.62 E-value=0.0011 Score=47.41 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-.+++.|++|+||||+++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999999874
No 432
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.62 E-value=0.0016 Score=45.52 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
--|+++|+|||||+|....|.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 346689999999999998887
No 433
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.58 E-value=0.0015 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
..+.|++.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999887
No 434
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0012 Score=51.51 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.-.++++|+.|||||||++.+.+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHH
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35667899999999999999998874
No 435
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.024 Score=43.35 Aligned_cols=28 Identities=36% Similarity=0.335 Sum_probs=23.5
Q ss_pred hcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 14 LFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 14 ~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-.++.--|++.|+||+|||+|.+++.+
T Consensus 177 ~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 177 LGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp HTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 3445667899999999999999999974
No 436
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.57 E-value=0.00056 Score=51.47 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.=-++++|+.|||||||++.+.+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 344578999999999999999984
No 437
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.57 E-value=0.0013 Score=43.15 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=18.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.++ +|+|+.|+||||++.++.
T Consensus 23 ~g~~-~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGIN-LIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEE-EEECCTTSSHHHHHHHHH
T ss_pred CCeE-EEECCCCCCHHHHHHHHH
Confidence 3444 799999999999999875
No 438
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.57 E-value=0.0011 Score=49.08 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHcC
Q 030008 21 ELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~~ 42 (184)
-++++|+.|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 5679999999999999999954
No 439
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.57 E-value=0.0033 Score=46.12 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
.-.++++|++|+||||++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999999876
No 440
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.0024 Score=49.22 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=23.8
Q ss_pred HhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 12 ~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+..-.++.--|++.|+||+|||+|++++.+
T Consensus 199 ~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 199 EQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp HHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 333345556799999999999999999974
No 441
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.54 E-value=0.0014 Score=49.19 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=24.8
Q ss_pred cccceeEEEEEcCCCCChHHHHHHHHcCC
Q 030008 15 FFKQEMELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 15 ~~~~~~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
...+.=+++++|++|+|||||++.+.+..
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34677789999999999999999998653
No 442
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0023 Score=49.39 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=24.6
Q ss_pred HhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 12 ~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++...+..-.|++.|+||+|||+|.+++.+
T Consensus 208 ~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 208 KDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp HHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 344455667899999999999999999984
No 443
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.002 Score=48.12 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=24.5
Q ss_pred HHHHHHhhc-ccc-eeEEEEEcCCCCChHHHHHHHHc
Q 030008 7 FLNWLRSLF-FKQ-EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 7 ~~~~~~~~~-~~~-~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..+.+++.. ... ..++++.|++|+||||+++.+.+
T Consensus 22 ~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 22 LTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp HHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred HHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 344455443 222 22399999999999999998875
No 444
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.52 E-value=0.0013 Score=47.06 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHH
Q 030008 19 EMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~ 40 (184)
.-.|+++|++||||||+.+.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999886
No 445
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.50 E-value=0.0018 Score=45.67 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=19.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
-+++++++|+|||||||+..++.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 46899999999999999999886
No 446
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.50 E-value=0.0033 Score=47.37 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=26.1
Q ss_pred HHHHHHHHhhcc-cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLFF-KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+..++..... ...-.+++.|++|+||||+++.+.+
T Consensus 30 ~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 30 RDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 344445544322 2344799999999999999998874
No 447
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.49 E-value=0.0039 Score=45.58 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...-+++.|+||+|||+|.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345677889999999999999874
No 448
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.49 E-value=0.0018 Score=48.76 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.-.++++|+.||||||+++.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 34568899999999999999887
No 449
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.47 E-value=0.1 Score=37.95 Aligned_cols=67 Identities=18% Similarity=0.004 Sum_probs=41.4
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEEEEeeCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLLVLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~D~~ 134 (184)
.+++.++|+|+...... .......+|.+++|+...... ...+......+... ....+-+|+|+.|..
T Consensus 201 ~yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~~~-~~~~~~~~~~l~~~---g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAVNT-LKEVETSLSRFEQN---GIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTTSB-HHHHHHHHHHHHHT---TCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCCCc-HHHHHHHHHHHHhC---CCCEEEEEEcCcccc
Confidence 36799999998544322 234456789999999987542 34444333333222 123456788999864
No 450
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.47 E-value=0.0021 Score=48.78 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++.-.++++|++|+|||||++.+.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 35566889999999999999999884
No 451
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.46 E-value=0.0017 Score=47.53 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
..|++.|.+||||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 452
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.43 E-value=0.0018 Score=46.96 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.--++++|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 444678999999999999998873
No 453
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.41 E-value=0.0022 Score=48.25 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-.+++.|++|+|||||++.+.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999874
No 454
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.40 E-value=0.0011 Score=48.48 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=18.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.+-|+|.|+.||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999999998763
No 455
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0027 Score=47.06 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=25.6
Q ss_pred HHHHHHhhc-ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 7 FLNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 7 ~~~~~~~~~-~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+...+.... ....-.+.+.|+||+|||++++.+..
T Consensus 32 i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 32 IFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 333444333 34567899999999999999998874
No 456
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.37 E-value=0.0019 Score=47.04 Aligned_cols=24 Identities=42% Similarity=0.441 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..-.+++.|++|+|||++++.+.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 356899999999999999999985
No 457
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.37 E-value=0.0026 Score=44.94 Aligned_cols=24 Identities=17% Similarity=0.540 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+...|+++|.+||||||+.+.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998773
No 458
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.36 E-value=0.003 Score=47.03 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.+++.|++|+||||+++.+.+
T Consensus 60 ~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998874
No 459
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.36 E-value=0.0029 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.=.++++|+.|||||||++.+.+.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446899999999999999999863
No 460
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.34 E-value=0.0032 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
-.+++.|++|+||||+++.+.+.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999743
No 461
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.33 E-value=0.0034 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=21.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4556789999999999999999984
No 462
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.33 E-value=0.002 Score=50.44 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q 030008 20 MELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~ 40 (184)
=.++++|+.|||||||++.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHh
Confidence 457899999999999999887
No 463
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.33 E-value=0.0023 Score=45.16 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=19.8
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
++.--++++|++|+|||||+.++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 445567899999999999987775
No 464
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.31 E-value=0.0043 Score=48.48 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=24.9
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+...+.+ ...-+++++|+||+|||++++.+..
T Consensus 190 ~~l~~~l~r---~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 190 QRVIEVLSR---RTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp HHHHHHHHC---SSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred HHHHHHHhc---cCCCCeEEECCCCCCHHHHHHHHHH
Confidence 344444433 3445789999999999999998774
No 465
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.29 E-value=0.0023 Score=47.35 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.-.+++.|++|+|||||++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35789999999999999998874
No 466
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.28 E-value=0.0024 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=19.2
Q ss_pred cceeEEEEEcCCCCChHHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~ 40 (184)
...+. +++|+.|||||||+++++
T Consensus 22 ~~g~~-~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 22 QSGIT-VVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CSEEE-EEECCTTSSHHHHHHHHH
T ss_pred CCCeE-EEECCCCCCHHHHHHHHH
Confidence 34554 599999999999999977
No 467
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.28 E-value=0.0021 Score=51.65 Aligned_cols=25 Identities=16% Similarity=0.466 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3455789999999999999999884
No 468
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.27 E-value=0.0029 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.=-++++|+.|||||||++.+.+.
T Consensus 25 Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 25 NTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 345789999999999999999853
No 469
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.26 E-value=0.0048 Score=44.21 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=26.6
Q ss_pred HHHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 5 EAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
..+.+.++... .....|++.|++|+|||++.+.+...
T Consensus 16 ~~~~~~~~~~~-~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 16 LEVLEQVSHLA-PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp HHHHHHHHHHT-TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 34444444332 34578999999999999999999854
No 470
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.26 E-value=0.004 Score=48.22 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=25.0
Q ss_pred hcccceeEEEEEcCCCCChHHHHHHHHcCC
Q 030008 14 LFFKQEMELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 14 ~~~~~~~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
....+.=+++++|+.|||||||++.+.+..
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 345677789999999999999999998543
No 471
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.22 E-value=0.003 Score=43.34 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.|++.|.+||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
No 472
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.22 E-value=0.0049 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 473
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.21 E-value=0.0044 Score=46.61 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=25.9
Q ss_pred HHHHHHHHhhc-ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 5 EAFLNWLRSLF-FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
+.+..++.... ....-.+++.|++|+||||+++.+..
T Consensus 29 ~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 29 RRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp HHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 34444443322 23455799999999999999998874
No 474
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.21 E-value=0.0033 Score=50.68 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=21.6
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4456889999999999999999883
No 475
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.0036 Score=50.52 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.=.++++|+.|||||||++.+.+-
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 346899999999999999999853
No 476
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.17 E-value=0.0018 Score=46.52 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...+++.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 34589999999999999999874
No 477
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.15 E-value=0.0055 Score=45.05 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.+++.|++|+||||+++.+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 499999999999999998874
No 478
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.14 E-value=0.0052 Score=46.13 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=22.6
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.++.--+.++|++|||||||+..+...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355567899999999999999998853
No 479
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.14 E-value=0.0028 Score=48.80 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHc
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...-|+++|.+||||||+.+++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999874
No 480
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.14 E-value=0.0022 Score=51.66 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3455789999999999999999884
No 481
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.13 E-value=0.0033 Score=49.98 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.=.++++|+.|||||||++.+.+.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3446899999999999999999854
No 482
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.12 E-value=0.0028 Score=50.36 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
=.++++|+.|||||||++.+.+
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999985
No 483
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.11 E-value=0.0044 Score=42.68 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
...|+++|++|+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999854
No 484
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.11 E-value=0.0097 Score=43.94 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcCC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
..-|++.|++|+||||+...+...+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 5689999999999999999999654
No 485
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.09 E-value=0.0044 Score=50.00 Aligned_cols=25 Identities=28% Similarity=0.516 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
+.=.++++|+.|||||||++.+.+.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4446899999999999999999853
No 486
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.07 E-value=0.0027 Score=50.99 Aligned_cols=25 Identities=20% Similarity=0.627 Sum_probs=21.3
Q ss_pred cceeEEEEEcCCCCChHHHHHHHHc
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.=.++++|+.|||||||++.+.+
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
Confidence 4455789999999999999998873
No 487
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.06 E-value=0.0037 Score=50.43 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.=.++++|+.|||||||++.+.+.
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999854
No 488
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.0052 Score=47.73 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=24.7
Q ss_pred HhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 12 RSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 12 ~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
++.-.+..--|++.|+||+|||+|.+++.+
T Consensus 236 ~~~Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 236 ATLGIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp HHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred HHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 334456677899999999999999999974
No 489
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.04 E-value=0.0023 Score=45.94 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=21.3
Q ss_pred ccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 16 FKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 16 ~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
.++...|++.|..||||||+.+.|..
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998863
No 490
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.02 E-value=0.0038 Score=46.32 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHcC
Q 030008 19 EMELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~~ 42 (184)
.-.|++.|++|+|||+|++++.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999999853
No 491
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.01 E-value=0.0042 Score=42.88 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=18.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHH
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVA 40 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~ 40 (184)
+.++ +|+|+.|+||||++.++.
T Consensus 23 ~~~~-~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGIN-LIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEE-EEECCTTSSHHHHHHHHH
T ss_pred CCeE-EEEcCCCCCHHHHHHHHH
Confidence 3444 789999999999999865
No 492
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.01 E-value=0.0083 Score=43.98 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHHc
Q 030008 21 ELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 21 ~v~i~G~~~sGKStli~~l~~ 41 (184)
.+++.|++|+|||++++.+..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 399999999999999998874
No 493
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.99 E-value=0.0038 Score=49.46 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=19.7
Q ss_pred cceeEEEEEcCCCCChHHHHHHH
Q 030008 17 KQEMELSLIGLQNAGKTSLVNVV 39 (184)
Q Consensus 17 ~~~~~v~i~G~~~sGKStli~~l 39 (184)
++.=.++++|++|||||||++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 45556899999999999999995
No 494
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.99 E-value=0.0048 Score=45.68 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHc
Q 030008 19 EMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 19 ~~~v~i~G~~~sGKStli~~l~~ 41 (184)
...|++.|++|+|||++++++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999974
No 495
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.98 E-value=0.007 Score=44.83 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHcC
Q 030008 20 MELSLIGLQNAGKTSLVNVVATG 42 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~~ 42 (184)
-.++|.|++|+|||||++.+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 47889999999999999999754
No 496
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.97 E-value=0.0051 Score=45.01 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998874
No 497
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.97 E-value=0.049 Score=39.31 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=40.4
Q ss_pred cEEEEEEecCCchhhHHhHHHHhccCCEEEEEEeCCCcCcHHHHHHHHHHHhcCCCCCCCcEE-EEeeCCCCC
Q 030008 63 NVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISRSELHDLLNKPSLSGIPLL-VLGNKIDKP 134 (184)
Q Consensus 63 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~D~~ 134 (184)
.+++.++|+|+...... .......+|.+++|+..... +...+......+.. .+.+++ +|+|+.|..
T Consensus 191 ~yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~~-~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSENN-NKDEVKKGKELIEA----TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTSC-CHHHHHHHHHHHHT----TTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCCC-cHHHHHHHHHHHHh----CCCCEEEEEEeCCcCC
Confidence 36799999998543321 22334567999999988653 34444444433322 245655 889999864
No 498
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.97 E-value=0.0082 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHc
Q 030008 20 MELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 20 ~~v~i~G~~~sGKStli~~l~~ 41 (184)
-.+++.|++|+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 499
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.96 E-value=0.0056 Score=41.20 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHcCC
Q 030008 18 QEMELSLIGLQNAGKTSLVNVVATGG 43 (184)
Q Consensus 18 ~~~~v~i~G~~~sGKStli~~l~~~~ 43 (184)
...-|++.|++|+||||+...|...+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 34568999999999999999998654
No 500
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.94 E-value=0.0091 Score=44.28 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=24.4
Q ss_pred HHHHHHHhhcccceeEEEEEcCCCCChHHHHHHHHc
Q 030008 6 AFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVAT 41 (184)
Q Consensus 6 ~~~~~~~~~~~~~~~~v~i~G~~~sGKStli~~l~~ 41 (184)
..++.+.. ... -.++|.|++|+|||||++.+..
T Consensus 20 ~el~~L~~-l~~--~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 20 KEIEKLKG-LRA--PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp HHHHHHHH-TCS--SEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHH-hcC--CcEEEECCCCCCHHHHHHHHHH
Confidence 34445544 322 3788999999999999999874
Done!