Query 030009
Match_columns 184
No_of_seqs 197 out of 804
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 11:09:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 99.9 1.7E-26 5.8E-31 186.7 6.1 91 1-93 92-183 (185)
2 3by4_A OTU1, ubiquitin thioest 99.9 4.1E-25 1.4E-29 181.9 8.4 87 1-91 52-139 (212)
3 3phu_A RNA-directed RNA polyme 99.9 2.1E-24 7.3E-29 178.4 8.5 102 1-106 70-174 (219)
4 3phx_A RNA-directed RNA polyme 99.9 4.5E-24 1.5E-28 172.4 7.8 102 1-106 70-174 (185)
5 1tff_A Ubiquitin thiolesterase 99.9 1.9E-22 6.3E-27 168.2 7.9 92 1-93 138-232 (234)
6 2zfy_A Ubiquitin thioesterase 99.9 4.2E-22 1.4E-26 166.0 8.7 90 1-91 141-234 (234)
7 4dhi_B Ubiquitin thioesterase 99.8 1.3E-19 4.5E-24 154.6 7.7 92 1-93 176-275 (284)
8 4ddg_A Ubiquitin-conjugating e 99.7 1.3E-17 4.5E-22 148.2 7.2 90 1-91 306-399 (399)
9 1wgl_A TOLL-interacting protei 97.6 0.00012 4.1E-09 48.3 5.7 46 132-177 8-53 (59)
10 2dhy_A CUE domain-containing p 97.6 0.00013 4.6E-09 49.3 5.5 46 134-179 19-64 (67)
11 1wj7_A Hypothetical protein (R 97.4 0.00018 6.2E-09 52.6 4.9 41 134-175 40-80 (104)
12 2cp9_A EF-TS, EF-TSMT, elongat 97.3 0.00042 1.4E-08 46.4 5.0 43 131-174 7-49 (64)
13 2bwb_A Ubiquitin-like protein 97.2 0.00062 2.1E-08 42.5 5.4 37 135-172 9-45 (46)
14 1otr_A Protein CUE2; protein-p 97.2 0.00086 3E-08 42.6 5.5 40 136-175 7-46 (49)
15 1wji_A Tudor domain containing 97.1 0.002 6.8E-08 42.8 6.8 45 131-177 7-51 (63)
16 1z96_A DNA-damage, UBA-domain 97.0 0.00094 3.2E-08 39.7 4.2 36 134-171 5-40 (40)
17 2knz_A Ubiquilin-4; cytoplasm, 97.0 0.0016 5.5E-08 41.7 5.5 37 136-173 14-50 (53)
18 1wr1_B Ubiquitin-like protein 96.9 0.00095 3.3E-08 43.8 4.2 36 136-172 20-55 (58)
19 2dah_A Ubiquilin-3; UBA domain 96.9 0.0013 4.5E-08 42.4 4.8 40 134-174 10-49 (54)
20 2g3q_A Protein YBL047C; endocy 96.9 0.0017 6E-08 39.5 4.7 37 134-172 5-41 (43)
21 2dna_A Unnamed protein product 96.8 0.0013 4.3E-08 44.5 4.2 40 136-176 22-61 (67)
22 1p3q_Q VPS9P, vacuolar protein 96.8 0.00046 1.6E-08 44.7 1.6 39 136-174 15-53 (54)
23 1vej_A Riken cDNA 4931431F19; 96.8 0.0019 6.4E-08 44.4 4.8 39 134-173 30-68 (74)
24 2jy5_A Ubiquilin-1; UBA, alter 96.8 0.0021 7.2E-08 41.0 4.7 38 134-172 13-50 (52)
25 1ify_A HHR23A, UV excision rep 96.7 0.0015 5.1E-08 41.2 3.9 37 134-172 9-45 (49)
26 2cp8_A NEXT to BRCA1 gene 1 pr 96.7 0.002 6.7E-08 41.7 4.0 37 141-177 16-52 (54)
27 1vg5_A RSGI RUH-014, rhomboid 96.6 0.0038 1.3E-07 42.7 5.5 42 131-174 27-68 (73)
28 2dak_A Ubiquitin carboxyl-term 96.6 0.0036 1.2E-07 41.3 5.2 45 130-176 6-50 (63)
29 3e21_A HFAF1, FAS-associated f 96.5 0.0028 9.5E-08 39.5 3.9 35 135-169 7-41 (45)
30 1tr8_A Conserved protein (MTH1 96.5 0.0022 7.7E-08 46.6 3.8 38 132-170 64-101 (102)
31 2dam_A ETEA protein; KIAA0887, 96.4 0.0051 1.8E-07 41.3 5.1 43 135-177 20-62 (67)
32 1wiv_A UBP14, ubiquitin-specif 96.1 0.0094 3.2E-07 40.6 5.2 41 132-174 28-68 (73)
33 2cwb_A Chimera of immunoglobul 96.1 0.0066 2.3E-07 44.5 4.6 37 136-173 69-105 (108)
34 1veg_A NEDD8 ultimate buster-1 95.8 0.016 5.4E-07 40.6 5.3 41 132-174 28-68 (83)
35 1whc_A RSGI RUH-027, UBA/UBX 3 95.8 0.03 1E-06 37.0 6.4 44 131-176 7-51 (64)
36 1v92_A NSFL1 cofactor P47; 3-h 95.6 0.022 7.5E-07 34.7 4.8 37 135-172 7-43 (46)
37 2dal_A Protein KIAA0794; FAS a 95.5 0.027 9.2E-07 37.0 5.2 43 134-177 16-58 (62)
38 2dag_A Ubiquitin carboxyl-term 95.4 0.036 1.2E-06 37.7 5.9 44 131-176 7-51 (74)
39 1dv0_A DNA repair protein HHR2 95.4 0.0067 2.3E-07 37.9 1.9 40 132-173 3-42 (47)
40 2ekk_A UBA domain from E3 ubiq 95.3 0.03 1E-06 34.5 4.7 39 131-172 7-45 (47)
41 2dai_A Ubadc1, ubiquitin assoc 95.2 0.046 1.6E-06 38.1 5.9 44 131-176 27-70 (83)
42 1vdl_A Ubiquitin carboxyl-term 95.2 0.038 1.3E-06 37.9 5.2 42 137-178 28-69 (80)
43 1wgn_A UBAP1, ubiquitin associ 95.0 0.021 7E-07 37.8 3.3 40 134-175 20-59 (63)
44 2cpw_A CBL-interacting protein 94.9 0.033 1.1E-06 36.9 4.3 41 132-174 18-59 (64)
45 2crn_A Ubash3A protein; compac 94.6 0.11 3.6E-06 34.4 6.2 45 131-177 7-52 (64)
46 2lva_A Ubiquitin carboxyl-term 93.3 0.0078 2.7E-07 45.1 0.0 39 139-177 24-62 (129)
47 2ooa_A E3 ubiquitin-protein li 94.0 0.14 4.6E-06 32.7 5.4 37 135-173 13-49 (52)
48 2dkl_A Trinucleotide repeat co 94.0 0.071 2.4E-06 37.3 4.5 44 131-176 18-62 (85)
49 2d9s_A CBL E3 ubiquitin protei 93.4 0.24 8.2E-06 31.7 5.8 39 134-174 10-48 (53)
50 2dzl_A Protein FAM100B; UBA-li 92.8 0.15 5E-06 34.0 4.3 40 135-175 19-58 (66)
51 4ae4_A Ubiquitin-associated pr 92.7 0.11 3.8E-06 38.4 4.0 37 136-174 79-115 (118)
52 2lbc_A Ubiquitin carboxyl-term 92.5 0.17 5.7E-06 37.4 4.8 42 132-175 77-118 (126)
53 1vek_A UBP14, ubiquitin-specif 91.4 0.48 1.6E-05 32.8 5.8 44 131-176 27-71 (84)
54 2oo9_A E3 ubiquitin-protein li 91.0 0.62 2.1E-05 28.8 5.3 37 135-173 6-42 (46)
55 2di0_A Activating signal coint 90.6 0.5 1.7E-05 32.0 5.1 39 137-175 17-55 (71)
56 3dkb_A Tumor necrosis factor, 90.3 0.37 1.3E-05 42.2 5.3 55 39-94 213-285 (390)
57 3k9o_A Ubiquitin-conjugating e 90.1 0.46 1.6E-05 37.7 5.4 37 134-172 164-200 (201)
58 3zrh_A Ubiquitin thioesterase 90.1 0.78 2.7E-05 40.9 7.3 73 22-95 263-352 (454)
59 2juj_A E3 ubiquitin-protein li 90.0 0.64 2.2E-05 29.9 4.9 39 134-174 8-46 (56)
60 2qsf_X RAD23, UV excision repa 89.6 0.27 9.2E-06 38.7 3.6 38 134-173 131-168 (171)
61 2lbc_A Ubiquitin carboxyl-term 86.3 1.6 5.6E-05 31.9 5.9 41 133-175 3-44 (126)
62 1ufz_A Hypothetical protein BA 85.3 1.7 5.9E-05 30.1 5.2 39 136-176 40-78 (83)
63 1oqy_A HHR23A, UV excision rep 84.9 0.42 1.4E-05 41.7 2.4 39 133-173 168-206 (368)
64 4ae4_A Ubiquitin-associated pr 83.0 1.5 5.2E-05 32.2 4.4 38 135-174 10-47 (118)
65 3e46_A Ubiquitin-conjugating e 82.2 2.1 7E-05 35.4 5.4 36 135-172 217-252 (253)
66 4dbg_B Ring finger protein 31; 79.4 1.9 6.3E-05 33.5 3.9 32 138-170 107-138 (162)
67 3k6g_A Telomeric repeat-bindin 77.5 4.7 0.00016 29.1 5.3 38 136-174 16-53 (111)
68 1oqy_A HHR23A, UV excision rep 77.0 1.2 4.1E-05 38.8 2.5 42 131-174 323-364 (368)
69 4g3o_A E3 ubiquitin-protein li 76.5 5.6 0.00019 25.7 5.0 37 136-173 20-56 (58)
70 3bq3_A Defective in cullin ned 72.3 4.2 0.00014 33.9 4.6 42 134-176 16-57 (270)
71 1oai_A Nuclear RNA export fact 72.0 9.5 0.00032 24.4 5.3 37 136-173 10-46 (59)
72 2qho_B E3 ubiquitin-protein li 69.3 8.9 0.0003 24.0 4.4 38 136-176 15-52 (53)
73 2ejs_A Autocrine motility fact 68.7 12 0.00042 24.0 5.2 38 136-174 16-53 (58)
74 1q02_A Sequestosome 1; helical 67.6 4.9 0.00017 25.4 3.0 28 143-170 19-47 (52)
75 2cos_A Serine/threonine protei 66.8 8.7 0.0003 24.4 4.1 40 136-177 12-52 (54)
76 3e7l_A Transcriptional regulat 65.7 6.1 0.00021 25.0 3.3 23 148-170 20-42 (63)
77 2jp7_A MRNA export factor MEX6 64.3 9.1 0.00031 24.4 3.9 40 136-176 9-48 (57)
78 1umq_A Photosynthetic apparatu 60.1 8.6 0.00029 26.1 3.4 23 148-170 42-64 (81)
79 2ekf_A Ancient ubiquitous prot 56.3 19 0.00066 23.3 4.5 45 136-183 16-60 (61)
80 1mdc_A Insect fatty acid bindi 50.4 47 0.0016 24.2 6.4 59 21-88 14-72 (132)
81 1ftp_A Muscle fatty acid bindi 49.5 58 0.002 23.7 6.8 59 21-87 15-73 (133)
82 1o8v_A Fatty acid binding prot 47.1 67 0.0023 23.4 6.9 59 21-87 15-73 (134)
83 4dbg_B Ring finger protein 31; 45.3 26 0.00088 27.1 4.3 31 145-175 73-103 (162)
84 1eal_A Gastrotropin, ileal lip 44.6 72 0.0025 23.0 6.6 59 21-88 12-71 (127)
85 1eto_A FIS, factor for inversi 43.5 22 0.00075 24.8 3.5 23 148-170 59-81 (98)
86 1lpj_A Retinol-binding protein 43.2 68 0.0023 23.3 6.3 60 21-89 14-73 (133)
87 2jn4_A Hypothetical protein FI 42.5 0.29 1E-05 34.3 -6.4 33 7-40 27-59 (87)
88 2rcq_A CRBP-II, retinol-bindin 42.5 79 0.0027 23.3 6.7 59 21-88 18-76 (141)
89 1p6p_A Fatty acid-binding prot 42.2 84 0.0029 22.5 6.6 39 21-66 12-50 (125)
90 1vyf_A SM14, 14 kDa fatty acid 41.4 75 0.0026 23.1 6.3 40 21-67 16-55 (135)
91 3ppt_A Sodium-calcium exchange 40.3 99 0.0034 22.5 6.8 60 21-89 14-73 (133)
92 1ntc_A Protein (nitrogen regul 40.0 15 0.00052 24.8 2.1 23 148-170 52-74 (91)
93 2qo4_A Liver-basic fatty acid 39.8 67 0.0023 23.1 5.8 57 21-86 13-69 (126)
94 1mvg_A Liver basic fatty acid 39.7 82 0.0028 22.6 6.2 40 21-67 12-51 (125)
95 2l2d_A OTU domain-containing p 39.3 50 0.0017 21.7 4.4 37 136-173 20-56 (73)
96 1ifc_A Intestinal fatty acid b 37.0 1.1E+02 0.0039 22.0 6.7 59 21-88 13-71 (132)
97 2dae_A KIAA0733 protein; mitog 35.9 50 0.0017 22.2 4.0 39 136-174 13-51 (75)
98 1g2h_A Transcriptional regulat 35.7 26 0.0009 21.8 2.6 22 148-170 22-43 (61)
99 2f73_A L-FABP, fatty acid-bind 34.8 1.1E+02 0.0037 22.9 6.4 58 21-87 35-92 (149)
100 1b56_A Fatty acid binding prot 34.5 1.3E+02 0.0045 21.8 7.4 59 21-88 17-75 (135)
101 3vg7_A Fatty acid-binding prot 34.4 1.2E+02 0.004 22.1 6.4 61 21-90 16-76 (132)
102 4a1y_A Myelin P2 protein; tran 33.5 1.3E+02 0.0045 21.8 6.6 59 21-88 16-74 (133)
103 1crb_A Cellular retinol bindin 32.9 1.3E+02 0.0044 21.8 6.4 59 21-88 14-72 (134)
104 1nri_A Hypothetical protein HI 32.5 14 0.00048 30.6 1.1 35 136-171 247-281 (306)
105 2a0a_A DER F 13; beta barrel, 32.1 1.1E+02 0.0038 22.0 5.9 58 21-87 14-71 (131)
106 2g7b_A Cellular retinoic acid- 31.5 1.4E+02 0.0048 21.6 6.4 58 21-87 13-72 (137)
107 3ihp_A Ubiquitin carboxyl-term 27.5 84 0.0029 30.0 5.6 39 133-173 720-758 (854)
108 4a5u_A RNA replicase polyprote 27.4 1.2E+02 0.004 23.3 5.4 49 40-91 106-156 (160)
109 3p6d_A Fatty acid-binding prot 27.4 1.8E+02 0.0062 21.2 6.5 60 21-89 22-81 (139)
110 3elx_A Ileal bIle acid-binding 26.0 1.4E+02 0.0048 21.8 5.6 62 21-90 16-77 (138)
111 1fdq_A Fatty acid-binding prot 25.6 1.4E+02 0.0048 21.5 5.5 40 21-67 14-53 (131)
112 3q6l_A Fatty acid-binding prot 24.1 2.2E+02 0.0077 21.1 6.5 60 21-89 35-94 (152)
113 4h62_V Mediator of RNA polymer 21.2 85 0.0029 17.1 2.5 25 143-174 3-29 (31)
114 2ay0_A Bifunctional PUTA prote 20.6 73 0.0025 19.8 2.6 24 136-159 17-40 (58)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.93 E-value=1.7e-26 Score=186.68 Aligned_cols=91 Identities=21% Similarity=0.371 Sum_probs=63.6
Q ss_pred ChHHHHHhCccccccccCCCCCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEe-ecccCCCcEEEEE
Q 030009 1 MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIR-NFDYHEARMIHLS 79 (184)
Q Consensus 1 lvv~yi~~n~d~F~pFv~~~~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~-~~~~~~~~~i~L~ 79 (184)
+||+||++|+++|+|||++ +|++||++|+++++|||++||+|||++|+++|+|++.+++.+.+. +......++|+|+
T Consensus 92 ~vv~yi~~n~d~f~~Fv~~--~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~~~~~~I~L~ 169 (185)
T 3pfy_A 92 HCMDYLMKNADYFSNYVTE--DFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVS 169 (185)
T ss_dssp HHHHHHHHTHHHHTTCC-------------------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSCCTTSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhc--cHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccCCCCCEEEEE
Confidence 4899999999999999985 899999999999999999999999999999999999987655443 3333457899999
Q ss_pred EccCCcccceeccC
Q 030009 80 YHDGEHYNGVRLKE 93 (184)
Q Consensus 80 Y~~g~HYdSV~~~~ 93 (184)
|+.++|||||+...
T Consensus 170 Y~~~~HYnSv~~p~ 183 (185)
T 3pfy_A 170 YHRNIHYNSVVNPN 183 (185)
T ss_dssp EETTTEEEEEECC-
T ss_pred ECCCCCcccccCCC
Confidence 99999999998754
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.91 E-value=4.1e-25 Score=181.86 Aligned_cols=87 Identities=22% Similarity=0.335 Sum_probs=75.3
Q ss_pred ChHHHHHhCccccccccCCCCCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccC-CCcEEEEE
Q 030009 1 MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYH-EARMIHLS 79 (184)
Q Consensus 1 lvv~yi~~n~d~F~pFv~~~~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~-~~~~i~L~ 79 (184)
+||+||++|+++|.+|+.+ ++|++||++|+++++|||++||+|||++|+++|+|++.++..+.+ |++. ..++|+|+
T Consensus 52 ~vv~yi~~n~d~f~e~~~~-~~~e~Y~~~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~~~~--~~~~~~~~~I~L~ 128 (212)
T 3by4_A 52 MVSKEVLNNPVKFNDAILD-KPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEK--FNEDKFDNYILIL 128 (212)
T ss_dssp HHHHHHHHCTTTTCHHHHT-SCHHHHHHHTTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTEEEE--ESTTTCSEEEEEE
T ss_pred HHHHHHHHCHHHHhhhhcC-CCHHHHHHHhcCCCEEccHHHHHHHHHHHCCCEEEEECCCCCeEE--eCCCCCCCeEEEE
Confidence 4899999999999866665 799999999999999999999999999999999999987543333 3322 47899999
Q ss_pred EccCCcccceec
Q 030009 80 YHDGEHYNGVRL 91 (184)
Q Consensus 80 Y~~g~HYdSV~~ 91 (184)
|+ |+|||||+.
T Consensus 129 Y~-g~HYdsl~~ 139 (212)
T 3by4_A 129 FN-GIHYDSLTM 139 (212)
T ss_dssp EC-SSCEEEEEE
T ss_pred Ec-CCcceEEec
Confidence 98 899999999
No 3
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.90 E-value=2.1e-24 Score=178.42 Aligned_cols=102 Identities=13% Similarity=0.181 Sum_probs=87.0
Q ss_pred ChHHHHHhCccccccccCCCCCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCC--ceEEeecccC-CCcEEE
Q 030009 1 MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSP--RWYIRNFDYH-EARMIH 77 (184)
Q Consensus 1 lvv~yi~~n~d~F~pFv~~~~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~--~~~i~~~~~~-~~~~i~ 77 (184)
+||+||++|++. |+.+ ++|++||++|+++|+|||++||+|||++|+++|+|++.+.+ .+.+..|+.+ ..++|+
T Consensus 70 ~va~yi~~n~d~---~~~~-~~feeY~~~m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~~~~~I~ 145 (219)
T 3phu_A 70 AARKYYQEEPEA---RLVG-LSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVN 145 (219)
T ss_dssp HHHHHGGGCHHH---HHHC-CCHHHHHHHHHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSSBEEEEEEESSCCTTTSEE
T ss_pred HHHHHHHhChhh---hhcC-CCHHHHHHHhcCCCccCCHHHHHHHHHHhCCCEEEEEecCCCCceeEEEecCCCCCCeEE
Confidence 379999999999 3333 69999999999999999999999999999999999998876 4445455433 368999
Q ss_pred EEEccCCcccceeccCCCCCCCCceeeec
Q 030009 78 LSYHDGEHYNGVRLKEDSCIGSARPIIIK 106 (184)
Q Consensus 78 L~Y~~g~HYdSV~~~~~~~~gp~~p~~~~ 106 (184)
|+|++|+|||||+++.+.+.+|+.|..|-
T Consensus 146 L~Y~g~~HYdSL~~~~d~~~~~~~~~~l~ 174 (219)
T 3phu_A 146 LLHSGQTHFDALRILPQFETDTREALSLM 174 (219)
T ss_dssp EEEETTTEEEEEEECTTTCCSCCCCCCHH
T ss_pred EEECCCcCchhheECCCCCCCCCcchhHH
Confidence 99998899999999999999998876643
No 4
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.90 E-value=4.5e-24 Score=172.44 Aligned_cols=102 Identities=13% Similarity=0.187 Sum_probs=77.5
Q ss_pred ChHHHHHhCccccccccCCCCCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCc--eEEeecccC-CCcEEE
Q 030009 1 MVVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPR--WYIRNFDYH-EARMIH 77 (184)
Q Consensus 1 lvv~yi~~n~d~F~pFv~~~~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~--~~i~~~~~~-~~~~i~ 77 (184)
+||+||++|+++ |+.+ ++|++||++|+++|+|||++||+|||++|+++|+|++.+.+. +.+..|+++ ..++|+
T Consensus 70 ~~~~yi~~~~~~---~~~~-~~~~~Y~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~~~~~I~ 145 (185)
T 3phx_A 70 AARKYYQEEPEA---RLVG-LSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVN 145 (185)
T ss_dssp HHHHHGGGCTTH---HHHC-CCHHHHHHHHTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CCBCCEEEEESSCCTTTSEE
T ss_pred HHHHHHHhChHh---hhcC-CCHHHHHHHhhCCCccCcHHHHHHHHHHHCCcEEEEEecCCCCceEEEEcCCCCCCCEEE
Confidence 378999999999 3333 699999999999999999999999999999999999987655 444455433 378999
Q ss_pred EEEccCCcccceeccCCCCCCCCceeeec
Q 030009 78 LSYHDGEHYNGVRLKEDSCIGSARPIIIK 106 (184)
Q Consensus 78 L~Y~~g~HYdSV~~~~~~~~gp~~p~~~~ 106 (184)
|+|++|+|||||+++.+.+.++..|+.|.
T Consensus 146 L~Y~g~~HYdsl~~~~~~~~~~~~~~~~~ 174 (185)
T 3phx_A 146 LLHSGQTHFDALRILPQFETDTREALSLM 174 (185)
T ss_dssp EEEETTTEEEEEEECGGGC----------
T ss_pred EEECCCcCchhceECCCCCCCCcccccHH
Confidence 99998899999999998888777765543
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.87 E-value=1.9e-22 Score=168.24 Aligned_cols=92 Identities=17% Similarity=0.316 Sum_probs=78.4
Q ss_pred ChHHHHHhCccccccccCCCCCHHHHHH-hhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEE--eecccCCCcEEE
Q 030009 1 MVVQYIVKNRETFEPFIEDDVPFDEYCQ-SMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYI--RNFDYHEARMIH 77 (184)
Q Consensus 1 lvv~yi~~n~d~F~pFv~~~~~f~~Y~~-~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i--~~~~~~~~~~i~ 77 (184)
+++.||++|+++|+||++++.+|++||+ .|+..++||||+||+|||++++++|+|++++++...+ ..|++...+.|+
T Consensus 138 lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~~~~~~I~ 217 (234)
T 1tff_A 138 LTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVY 217 (234)
T ss_dssp HHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSSCSEE
T ss_pred HHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCCCCCCeEE
Confidence 4789999999999999998779999999 7999999999999999999999999999998765333 346666678899
Q ss_pred EEEccCCcccceeccC
Q 030009 78 LSYHDGEHYNGVRLKE 93 (184)
Q Consensus 78 L~Y~~g~HYdSV~~~~ 93 (184)
|+|+.| |||+|++..
T Consensus 218 LlY~pg-HYdily~~~ 232 (234)
T 1tff_A 218 LLYKTS-HYNILYAAD 232 (234)
T ss_dssp EEEETT-EEEEEEECC
T ss_pred EEECCC-CceecccCC
Confidence 999976 999999864
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.86 E-value=4.2e-22 Score=165.99 Aligned_cols=90 Identities=21% Similarity=0.295 Sum_probs=78.9
Q ss_pred ChHHHHHhCccccccccCCCCCHHHHHH-hhhcCCccCCHHHHHHHHhhcCccEEEEEccCCc---eEEeecccCCCcEE
Q 030009 1 MVVQYIVKNRETFEPFIEDDVPFDEYCQ-SMETDGTWAGHMELQAASLVTHSNICIHRHMSPR---WYIRNFDYHEARMI 76 (184)
Q Consensus 1 lvv~yi~~n~d~F~pFv~~~~~f~~Y~~-~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~---~~i~~~~~~~~~~i 76 (184)
+++.||++|+++|+|||+++.+|++||. .++.+++||||+||+|||++|+++|+|++++++. +....|++...++|
T Consensus 141 lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~~~p~I 220 (234)
T 2zfy_A 141 LTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKV 220 (234)
T ss_dssp HHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEESTTCCCSE
T ss_pred HHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCCCCCCeE
Confidence 4789999999999999998789999998 5999999999999999999999999999998754 44455666667889
Q ss_pred EEEEccCCcccceec
Q 030009 77 HLSYHDGEHYNGVRL 91 (184)
Q Consensus 77 ~L~Y~~g~HYdSV~~ 91 (184)
+|+|+.| |||++++
T Consensus 221 ~LlY~pg-HYdiLy~ 234 (234)
T 2zfy_A 221 YLLYRPG-HYDILYK 234 (234)
T ss_dssp EEEEETT-EEEEEEC
T ss_pred EEEECCC-CcccCCC
Confidence 9999987 9999985
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.79 E-value=1.3e-19 Score=154.59 Aligned_cols=92 Identities=21% Similarity=0.368 Sum_probs=77.2
Q ss_pred ChHHHHHhCccccccccCCCCCHHHHHH-hhhcCCccCCHHHHHHHHhhcCccEEEEEccCC-ceEE--ee-cccCC---
Q 030009 1 MVVQYIVKNRETFEPFIEDDVPFDEYCQ-SMETDGTWAGHMELQAASLVTHSNICIHRHMSP-RWYI--RN-FDYHE--- 72 (184)
Q Consensus 1 lvv~yi~~n~d~F~pFv~~~~~f~~Y~~-~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~-~~~i--~~-~~~~~--- 72 (184)
+++.||+.|+++|+|||+++.++++||+ +|+..++||||+||+|||++|+++|+|+++++. ...+ .. |+++.
T Consensus 176 lts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~~~~~~ 255 (284)
T 4dhi_B 176 ITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPSDDQQI 255 (284)
T ss_dssp HHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESCCCSCC
T ss_pred HHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCCCCCCC
Confidence 5789999999999999998789999999 799999999999999999999999999998752 1111 11 44332
Q ss_pred CcEEEEEEccCCcccceeccC
Q 030009 73 ARMIHLSYHDGEHYNGVRLKE 93 (184)
Q Consensus 73 ~~~i~L~Y~~g~HYdSV~~~~ 93 (184)
.+.|+|.|+.| |||.|++..
T Consensus 256 ~p~I~LLYrpg-HYDILY~~~ 275 (284)
T 4dhi_B 256 APEITLLYRPG-HYDVIYKKD 275 (284)
T ss_dssp CCSEEEEEETT-EEEEEEECC
T ss_pred CCEEEEeecCC-CccccccCC
Confidence 37899999876 999999973
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.70 E-value=1.3e-17 Score=148.18 Aligned_cols=90 Identities=21% Similarity=0.293 Sum_probs=78.3
Q ss_pred ChHHHHHhCccccccccCCCCCHHHHHH-hhhcCCccCCHHHHHHHHhhcCccEEEEEccCC---ceEEeecccCCCcEE
Q 030009 1 MVVQYIVKNRETFEPFIEDDVPFDEYCQ-SMETDGTWAGHMELQAASLVTHSNICIHRHMSP---RWYIRNFDYHEARMI 76 (184)
Q Consensus 1 lvv~yi~~n~d~F~pFv~~~~~f~~Y~~-~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~---~~~i~~~~~~~~~~i 76 (184)
|++.||+.|+++|+||++++.++++||+ .|+..++||||++|+|||++|+++|.|+.+++. .+....+++...+.|
T Consensus 306 lts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~~~~~~I 385 (399)
T 4ddg_A 306 LTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKV 385 (399)
T ss_dssp HHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTTTCCCCC
T ss_pred HHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCCCCCCEE
Confidence 4789999999999999998779999999 899999999999999999999999999988762 222233565667899
Q ss_pred EEEEccCCcccceec
Q 030009 77 HLSYHDGEHYNGVRL 91 (184)
Q Consensus 77 ~L~Y~~g~HYdSV~~ 91 (184)
+|+|+.| |||.+++
T Consensus 386 ~LLYrPg-HYDiLY~ 399 (399)
T 4ddg_A 386 YLLYRPG-HYDILYK 399 (399)
T ss_dssp EEEEETB-EEEEEEC
T ss_pred EEEEcCC-ccccCCC
Confidence 9999887 9999985
No 9
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.62 E-value=0.00012 Score=48.28 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=38.5
Q ss_pred CChhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Q 030009 132 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 177 (184)
Q Consensus 132 ~~~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~~ 177 (184)
..+..++.+..-..--|.+.|+.+|++|+||+|+||..||.+....
T Consensus 8 ~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence 3355677777777778999999999999999999999999987654
No 10
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.56 E-value=0.00013 Score=49.30 Aligned_cols=46 Identities=20% Similarity=0.095 Sum_probs=38.9
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCCCcc
Q 030009 134 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTEEY 179 (184)
Q Consensus 134 ~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~~~~ 179 (184)
..+++.+..-.+--|.+.|+.+|++|+||+|+||+.||.+......
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~~~ 64 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESGP 64 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCC
Confidence 3456777777787899999999999999999999999998866554
No 11
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.41 E-value=0.00018 Score=52.57 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=36.7
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcC
Q 030009 134 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 175 (184)
Q Consensus 134 ~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~ 175 (184)
.+.|+.||.-|||+ .+.++.+|.+|+||++.||.+||....
T Consensus 40 eekVk~L~EmtG~s-eeeAr~AL~~~ngDl~~AI~~Lleg~~ 80 (104)
T 1wj7_A 40 EEKVKQLIDITGKN-QDECVIALHDCNGDVNRAINVLLEGNP 80 (104)
T ss_dssp HHHHHHHHHHTCCC-HHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred HHHHHHHHHhhCCC-HHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 45689999999985 899999999999999999999997653
No 12
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=97.27 E-value=0.00042 Score=46.44 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=37.3
Q ss_pred cCChhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhc
Q 030009 131 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 174 (184)
Q Consensus 131 ~~~~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~ 174 (184)
.+....|+++...||.. ..-.+++|++++||++.||++|-...
T Consensus 7 ~it~~~Vk~LRe~TGag-~~dcKkAL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 7 GSSKELLMKLRRKTGYS-FVNCKKALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp CCCCHHHHHHHHHHCCC-HHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 34456799999999975 99999999999999999999997654
No 13
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=97.24 E-value=0.00062 Score=42.52 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=31.5
Q ss_pred hHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHH
Q 030009 135 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 172 (184)
Q Consensus 135 ~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~ 172 (184)
..|++++. -|.+|.+.++++|+.++||++.||++|+.
T Consensus 9 ~~i~~L~~-MGF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 9 HQLRQLND-MGFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHH-cCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 35666665 48889999999999999999999999984
No 14
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.18 E-value=0.00086 Score=42.57 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=33.0
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcC
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 175 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~ 175 (184)
.++.++.-.+-.+...|+.+|+.++||+|.||..||.+..
T Consensus 7 ~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 7 KLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 4555555555568999999999999999999999999843
No 15
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.07 E-value=0.002 Score=42.81 Aligned_cols=45 Identities=18% Similarity=0.374 Sum_probs=37.3
Q ss_pred cCChhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Q 030009 131 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 177 (184)
Q Consensus 131 ~~~~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~~ 177 (184)
+.++.+|++++. -| .+.+.++++|+.++||++.|+++|+.-....
T Consensus 7 ~~~~~~I~~L~~-MG-F~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 7 GVDEKALKHITE-MG-FSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp SSCHHHHHHHHT-TT-CCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred CCCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 456778888876 46 5799999999999999999999999876544
No 16
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=96.99 E-value=0.00094 Score=39.75 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=30.6
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHH
Q 030009 134 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI 171 (184)
Q Consensus 134 ~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll 171 (184)
++.|++++.- |. +.+.++++|..++||++.|+++|+
T Consensus 5 ~~~i~~L~~m-Gf-~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSM-GF-DPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHT-TC-CHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHc-CC-CHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4467888875 75 689999999999999999999984
No 17
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.98 E-value=0.0016 Score=41.69 Aligned_cols=37 Identities=32% Similarity=0.497 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHh
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 173 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~ 173 (184)
.|++++. -|..|.+.++++|..++||++.||++|+.-
T Consensus 14 ~l~~L~~-MGF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 14 QLEQLNS-MGFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 4566655 587799999999999999999999999974
No 18
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.94 E-value=0.00095 Score=43.76 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHH
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 172 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~ 172 (184)
.|++++. -|.+|.+.++++|+.++||++.||++|+.
T Consensus 20 qi~~L~~-MGF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 20 QLRQLND-MGFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHH-HTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4666655 48889999999999999999999999986
No 19
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.94 E-value=0.0013 Score=42.42 Aligned_cols=40 Identities=33% Similarity=0.402 Sum_probs=33.3
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhc
Q 030009 134 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 174 (184)
Q Consensus 134 ~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~ 174 (184)
...+++++. -|.+|.+.++++|..++||++.||++|+.-.
T Consensus 10 ~~~l~~L~~-MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 10 QVQLEQLRS-MGFLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp HHHHHHHHH-HTCCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHH-cCCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 345666655 4888999999999999999999999999754
No 20
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.86 E-value=0.0017 Score=39.49 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=31.1
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHH
Q 030009 134 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 172 (184)
Q Consensus 134 ~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~ 172 (184)
+.+|++++. -| .+.+.++++|..++||++.|+++|+.
T Consensus 5 e~~i~~L~~-MG-F~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 5 SLAVEELSG-MG-FTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHT-TT-SCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 346777776 46 57899999999999999999999985
No 21
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.84 E-value=0.0013 Score=44.48 Aligned_cols=40 Identities=30% Similarity=0.340 Sum_probs=32.7
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCC
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 176 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~ 176 (184)
.++++.. -|..|.+.+.++|++++||++.||++|+.-...
T Consensus 22 ql~qL~~-MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 22 EMECLQA-MGFVNYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHHHHH-HTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHH-cCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 3444443 588899999999999999999999999986554
No 22
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=96.77 E-value=0.00046 Score=44.72 Aligned_cols=39 Identities=8% Similarity=0.167 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhc
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 174 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~ 174 (184)
+++.+..-.+--|.+.|+.+|+.++|++|+||++||++.
T Consensus 15 ~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqms 53 (54)
T 1p3q_Q 15 TLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSLS 53 (54)
T ss_dssp HHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC------
T ss_pred HHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 455555556667999999999999999999999999975
No 23
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.77 E-value=0.0019 Score=44.42 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=33.1
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHh
Q 030009 134 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 173 (184)
Q Consensus 134 ~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~ 173 (184)
...|++++. -|..|.+.++++|+.++||++.||++|+.-
T Consensus 30 e~qi~qL~e-MGF~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 30 QQELEELKA-LGFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHHHHH-HTCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHH-cCCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 345666666 488899999999999999999999999964
No 24
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.76 E-value=0.0021 Score=41.00 Aligned_cols=38 Identities=34% Similarity=0.490 Sum_probs=32.2
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHH
Q 030009 134 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 172 (184)
Q Consensus 134 ~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~ 172 (184)
...|++++. -|.+|.+.++++|..++||++.||++|+.
T Consensus 13 ~~~l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 13 QQQLEQLSA-MGFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 345666665 58779999999999999999999999974
No 25
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.75 E-value=0.0015 Score=41.17 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=31.7
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHH
Q 030009 134 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 172 (184)
Q Consensus 134 ~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~ 172 (184)
+..|++++. -|. +.+.++.+|+.++||++.|+++|+.
T Consensus 9 ~~~i~~L~~-MGF-~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMS-MGY-ERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHH-TTC-CHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHH-cCC-CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 456777766 464 8999999999999999999999997
No 26
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.67 E-value=0.002 Score=41.73 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=32.6
Q ss_pred HhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Q 030009 141 MAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 177 (184)
Q Consensus 141 ~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~~ 177 (184)
+..-|.+|.++-.++|..++||++.||+.||+...+.
T Consensus 16 L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 16 LFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGPS 52 (54)
T ss_dssp HHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSSC
T ss_pred HHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Confidence 3345888999999999999999999999999987664
No 27
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.63 E-value=0.0038 Score=42.75 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=35.0
Q ss_pred cCChhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhc
Q 030009 131 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 174 (184)
Q Consensus 131 ~~~~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~ 174 (184)
+..++.|++++. -| .+.+.++++|+.++||++.|+++|+.-.
T Consensus 27 ~~~ee~I~~L~e-MG-F~r~~a~~AL~~~~~nve~Ave~Ll~~~ 68 (73)
T 1vg5_A 27 AASEEQIQKLVA-MG-FDRTQVEVALAAADDDLTVAVEILMSQS 68 (73)
T ss_dssp CCCHHHHHHHHT-TT-CCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred cccHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 334667888877 46 5899999999999999999999999743
No 28
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.62 E-value=0.0036 Score=41.32 Aligned_cols=45 Identities=7% Similarity=0.226 Sum_probs=37.4
Q ss_pred CcCChhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCC
Q 030009 130 GIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 176 (184)
Q Consensus 130 ~~~~~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~ 176 (184)
..+++..|++++. -|. +.+.++++|+.++||++.|+++|+.-...
T Consensus 6 ~~~~~~~v~~L~~-MGF-~~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 6 SGPPEDCVTTIVS-MGF-SRDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp CCCCHHHHHHHHH-HTC-CHHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHH-cCC-CHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 4566778888877 465 69999999999999999999999986543
No 29
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=96.54 E-value=0.0028 Score=39.51 Aligned_cols=35 Identities=29% Similarity=0.139 Sum_probs=31.8
Q ss_pred hHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHH
Q 030009 135 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEF 169 (184)
Q Consensus 135 ~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~ 169 (184)
+.|...+.-||+.|....++.|+.++.|++.|+..
T Consensus 7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 7 MILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 46789999999999999999999999999999853
No 30
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=96.48 E-value=0.0022 Score=46.59 Aligned_cols=38 Identities=37% Similarity=0.538 Sum_probs=33.9
Q ss_pred CChhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHH
Q 030009 132 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFL 170 (184)
Q Consensus 132 ~~~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~L 170 (184)
+++..|..||..+||+ ....+++|++|+||+-.||.+|
T Consensus 64 i~~edi~lv~~q~~vs-~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 64 IPEDDIELVMNQTGAS-REDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCHHHHHHHHHHHCCC-HHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCHHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 4566799999999996 8999999999999999999876
No 31
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.43 E-value=0.0051 Score=41.25 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=38.3
Q ss_pred hHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Q 030009 135 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 177 (184)
Q Consensus 135 ~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~~ 177 (184)
+.|++.|.-|||.|....++.|+.+++|++.||...++...+.
T Consensus 20 e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~~~ 62 (67)
T 2dam_A 20 EKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEGS 62 (67)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 4688999999988999999999999999999999998876543
No 32
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.12 E-value=0.0094 Score=40.60 Aligned_cols=41 Identities=20% Similarity=0.447 Sum_probs=33.8
Q ss_pred CChhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhc
Q 030009 132 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 174 (184)
Q Consensus 132 ~~~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~ 174 (184)
.++.+|++++. -| .+...++++|+.++||++.|+++|+.-.
T Consensus 28 ~~~~~v~~L~~-MG-F~~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 28 IDQSSVDTLLS-FG-FAEDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp SCHHHHHHHHH-HT-CCHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred CCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 44667877776 36 4799999999999999999999999743
No 33
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=96.10 E-value=0.0066 Score=44.54 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=31.1
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHh
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 173 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~ 173 (184)
.++++.. -|..|.+.++++|+.++||++.||++|+.-
T Consensus 69 qL~qL~e-MGF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 69 QLQQLRD-MGIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp HHHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 4544444 688899999999999999999999999964
No 34
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.82 E-value=0.016 Score=40.58 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=34.6
Q ss_pred CChhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhc
Q 030009 132 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 174 (184)
Q Consensus 132 ~~~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~ 174 (184)
.+++.|++++. -| .+...++.+|+.++||++.|+++|+.-.
T Consensus 28 ~~ee~I~~Lv~-MG-F~~~~A~~AL~~t~gdve~A~e~L~sh~ 68 (83)
T 1veg_A 28 PSQESINQLVY-MG-FDTVVAEAALRVFGGNVQLAAQTLAHHG 68 (83)
T ss_dssp CCHHHHHHHHH-HS-CCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 34677888877 36 4899999999999999999999999843
No 35
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.78 E-value=0.03 Score=37.01 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=35.5
Q ss_pred cCChhHHHHHHhcCCCCChHHHHHHHHHh-CCCHHHHHHHHHHhcCC
Q 030009 131 IINAGSIKLVMAGSGCENSEKVEEVLLQV-GGDVDAAIEFLIAEQGT 176 (184)
Q Consensus 131 ~~~~~~v~~v~~~tG~~d~~~i~~~L~~~-~gdid~Ai~~Ll~~~~~ 176 (184)
.+++..|++++. -|. +...++++|..+ ++|++.|+++|+.-...
T Consensus 7 ~~~~~~v~~L~~-MGF-~~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 7 GAELTALESLIE-MGF-PRGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp CCCCCHHHHHHT-TTC-CHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHH-cCC-CHHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 345667888887 464 689999999999 79999999999986543
No 36
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=95.59 E-value=0.022 Score=34.73 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=33.0
Q ss_pred hHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHH
Q 030009 135 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 172 (184)
Q Consensus 135 ~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~ 172 (184)
+.|++.+.-||| +....++.|+.+++|++.||....+
T Consensus 7 ~~i~~F~~iTg~-~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 7 DALREFVAVTGA-EEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHTCC-CHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 368899999998 6999999999999999999987765
No 37
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.49 E-value=0.027 Score=37.01 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=36.7
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Q 030009 134 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 177 (184)
Q Consensus 134 ~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~~ 177 (184)
.+.|++.|.-|||. ....++.|+.+++|++.||...++.....
T Consensus 16 ~e~i~qF~~iTg~~-~~~A~~~Le~~~WnLe~Av~~ff~~~~~~ 58 (62)
T 2dal_A 16 KGLIQQFTTITGAS-ESVGKHMLEACNNNLEMAVTMFLDGGGSG 58 (62)
T ss_dssp HHHHHHHHHHTCCC-HHHHHHHHHTTTSCHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHcCCCCC
Confidence 34689999999995 99999999999999999999888765443
No 38
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.43 E-value=0.036 Score=37.74 Aligned_cols=44 Identities=11% Similarity=0.277 Sum_probs=36.1
Q ss_pred cCChhHHHHHHhcCCCCChHHHHHHHHHhCC-CHHHHHHHHHHhcCC
Q 030009 131 IINAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQGT 176 (184)
Q Consensus 131 ~~~~~~v~~v~~~tG~~d~~~i~~~L~~~~g-did~Ai~~Ll~~~~~ 176 (184)
.+++..|++++. -|. +...++++|..++| |++.|+++|+.-...
T Consensus 7 ~~~e~~v~~L~~-MGF-~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 7 GLDESVIIQLVE-MGF-PMDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp SSCHHHHHHHHH-HSC-CHHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHH-cCC-CHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 356778888877 364 68999999999997 899999999986554
No 39
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=95.40 E-value=0.0067 Score=37.87 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=32.6
Q ss_pred CChhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHh
Q 030009 132 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 173 (184)
Q Consensus 132 ~~~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~ 173 (184)
.+..+|+.++. -| .+...++++|.+|++|.+.|..+|++-
T Consensus 3 ~e~eaI~rL~~-mG-F~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 3 QEKEAIERLKA-LG-FPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp CCHHHHTTTTT-TT-CCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred chHHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 44567776665 35 579999999999999999999999864
No 40
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.27 E-value=0.03 Score=34.53 Aligned_cols=39 Identities=26% Similarity=0.443 Sum_probs=31.5
Q ss_pred cCChhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHH
Q 030009 131 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 172 (184)
Q Consensus 131 ~~~~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~ 172 (184)
..++..|++++. -|. +.+.++++|..+ ||++.|+++|+.
T Consensus 7 ~~~~~~v~~L~~-MGF-~~~~a~~AL~~~-~n~e~A~~~L~~ 45 (47)
T 2ekk_A 7 GVNQQQLQQLMD-MGF-TREHAMEALLNT-STMEQATEYLLT 45 (47)
T ss_dssp SSCHHHHHHHHH-HHC-CHHHHHHHHHHS-CSHHHHHHHHHT
T ss_pred CCCHHHHHHHHH-cCC-CHHHHHHHHHHc-CCHHHHHHHHHc
Confidence 345677887776 364 679999999999 599999999985
No 41
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.19 E-value=0.046 Score=38.11 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=36.3
Q ss_pred cCChhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCC
Q 030009 131 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 176 (184)
Q Consensus 131 ~~~~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~ 176 (184)
.+++..|++++. -| .+...++++|..++||++.|+++|+.-...
T Consensus 27 ~~~e~~i~~L~~-MG-F~~~~a~~AL~~t~~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 27 RVDEAALRQLTE-MG-FPENRATKALQLNHMSVPQAMEWLIEHAED 70 (83)
T ss_dssp SCCHHHHHHHHH-HT-CCHHHHHHHHHHTTSCHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 356778888877 46 468999999999999999999999986543
No 42
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.16 E-value=0.038 Score=37.86 Aligned_cols=42 Identities=17% Similarity=0.384 Sum_probs=35.8
Q ss_pred HHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCCCc
Q 030009 137 IKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTEE 178 (184)
Q Consensus 137 v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~~~ 178 (184)
+.+.-.-||..|.....++|++-+||+..||.+|-+++-.+.
T Consensus 28 LnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~~~P 69 (80)
T 1vdl_A 28 LNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAKTP 69 (80)
T ss_dssp HHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcccccCC
Confidence 344445799999999999999999999999999998866554
No 43
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.99 E-value=0.021 Score=37.84 Aligned_cols=40 Identities=20% Similarity=0.402 Sum_probs=31.9
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcC
Q 030009 134 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 175 (184)
Q Consensus 134 ~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~ 175 (184)
+..|..+++ -| ...+.++.+|++++||+|+|++.|+.-..
T Consensus 20 ~e~V~~Lvs-MG-Fs~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 20 RQCVETVVN-MG-YSYECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHH-HH-CCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 445776665 35 56899999999999999999999987543
No 44
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.91 E-value=0.033 Score=36.86 Aligned_cols=41 Identities=17% Similarity=0.464 Sum_probs=33.5
Q ss_pred CChhHHHHHHhcCCCCChHHHHHHHHHhCC-CHHHHHHHHHHhc
Q 030009 132 INAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQ 174 (184)
Q Consensus 132 ~~~~~v~~v~~~tG~~d~~~i~~~L~~~~g-did~Ai~~Ll~~~ 174 (184)
.++..|++++. -|. +...++++|..++| |++.|+++|+.-.
T Consensus 18 ~~e~~i~~L~~-MGF-~~~~a~~AL~~t~~~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 18 KHGSALDVLLS-MGF-PRARAQKALASTGGRSVQTACDWLFSHS 59 (64)
T ss_dssp SCCCHHHHHHH-HTC-CHHHHHHHHHHTTTSCHHHHHHHHHSCC
T ss_pred CCHHHHHHHHH-cCC-CHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 34557877776 364 68999999999999 9999999999744
No 45
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.59 E-value=0.11 Score=34.40 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=36.3
Q ss_pred cCChhHHHHHHhcCCCCChHHHHHHHHHhCC-CHHHHHHHHHHhcCCC
Q 030009 131 IINAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQGTE 177 (184)
Q Consensus 131 ~~~~~~v~~v~~~tG~~d~~~i~~~L~~~~g-did~Ai~~Ll~~~~~~ 177 (184)
..++..|++++. -| .+.+.++++|..+++ |++.|+++|++-....
T Consensus 7 ~~~e~~v~~L~~-MG-F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 7 GSSPSLLEPLLA-MG-FPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp CCSCSSHHHHHH-TS-CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred CCCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 445667888877 46 468999999999987 9999999999876543
No 46
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=93.32 E-value=0.0078 Score=45.07 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=33.7
Q ss_pred HHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Q 030009 139 LVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 177 (184)
Q Consensus 139 ~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~~ 177 (184)
+.-.-||..|...+.++|++++||+..||.+|-+.+..+
T Consensus 24 QLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~~ 62 (129)
T 2lva_A 24 QLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKE 62 (129)
Confidence 444469999999999999999999999999998875544
No 47
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=94.03 E-value=0.14 Score=32.71 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=32.1
Q ss_pred hHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHh
Q 030009 135 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 173 (184)
Q Consensus 135 ~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~ 173 (184)
+.|++.|. -| +|.+.+.++|...+||++-|-..||+-
T Consensus 13 ~~Ia~Lm~-mG-Fsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLMG-EG-YAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHHH-TT-CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 56888887 25 689999999999999999999999874
No 48
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.01 E-value=0.071 Score=37.28 Aligned_cols=44 Identities=23% Similarity=0.207 Sum_probs=35.4
Q ss_pred cCC-hhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCC
Q 030009 131 IIN-AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 176 (184)
Q Consensus 131 ~~~-~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~ 176 (184)
+|. +.+|++++. -|. +...++++|..+++|++.|+++|+.-...
T Consensus 18 ~~~n~~~I~qL~~-MGF-~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 18 AWIMSRLIKQLTD-MGF-PREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHHHHH-HTC-CHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred cccCHHHHHHHHH-cCC-CHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 443 567777777 475 68999999999999999999999985543
No 49
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.42 E-value=0.24 Score=31.68 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=32.4
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhc
Q 030009 134 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 174 (184)
Q Consensus 134 ~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~ 174 (184)
++.|++.|. -| +|.+.+.++|...+||+|.|-..|+.--
T Consensus 10 e~~I~~L~~-lG-F~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 10 SSEIERLMS-QG-YSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HHHHHHHHH-HT-CCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 346777777 24 6899999999999999999999998653
No 50
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.77 E-value=0.15 Score=33.96 Aligned_cols=40 Identities=15% Similarity=0.332 Sum_probs=34.5
Q ss_pred hHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcC
Q 030009 135 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 175 (184)
Q Consensus 135 ~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~ 175 (184)
+.|++.|.-||| +....++.|+.+++|++.||....+...
T Consensus 19 ~~i~qF~~iTg~-~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 19 VMINQFVLAAGC-AADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHCC-CHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 458899999998 6788999999999999999999886543
No 51
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=92.73 E-value=0.11 Score=38.40 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=29.8
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhc
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 174 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~ 174 (184)
.|.+.+. -| .+.+.|+.+|..++||+|.|++.|+...
T Consensus 79 ~v~~L~e-MG-F~~~~a~~AL~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 79 LMSKFKE-MG-FELKDIKEVLLLHNNDQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHH-TT-CCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 3444444 46 5799999999999999999999999754
No 52
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=92.51 E-value=0.17 Score=37.38 Aligned_cols=42 Identities=7% Similarity=0.270 Sum_probs=34.6
Q ss_pred CChhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcC
Q 030009 132 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 175 (184)
Q Consensus 132 ~~~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~ 175 (184)
.++..|++++. -|+ +...++++|..++||++.|+++|+.-..
T Consensus 77 ~~e~~v~~L~~-MGF-~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 77 PPEEIVAIITS-MGF-QRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CCHHHHHHHHH-HTS-CHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred cCHHHHHHHHH-cCC-CHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 34667887777 475 5999999999999999999999997543
No 53
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=91.41 E-value=0.48 Score=32.84 Aligned_cols=44 Identities=11% Similarity=0.317 Sum_probs=35.1
Q ss_pred cCChhHHHHHHhcCCCCChHHHHHHHHHhC-CCHHHHHHHHHHhcCC
Q 030009 131 IINAGSIKLVMAGSGCENSEKVEEVLLQVG-GDVDAAIEFLIAEQGT 176 (184)
Q Consensus 131 ~~~~~~v~~v~~~tG~~d~~~i~~~L~~~~-gdid~Ai~~Ll~~~~~ 176 (184)
.+++.+|++++. -|. +...++++|...+ +|++.|+++|+.-...
T Consensus 27 ~~~e~~v~~L~~-MGF-~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 27 VANEEIVAQLVS-MGF-SQLHCQKAAINTSNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp CCCHHHHHHHHH-HTC-CHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHH-cCC-CHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 345778888877 464 6899999999885 7999999999986543
No 54
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=91.04 E-value=0.62 Score=28.84 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=30.3
Q ss_pred hHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHh
Q 030009 135 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 173 (184)
Q Consensus 135 ~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~ 173 (184)
.+|...|. -| +|.+.++++|...++||+.|-..|++-
T Consensus 6 ~~I~~L~s-~G-f~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 6 SEIENLMS-QG-YSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHHH-TT-BCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-cC-CCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 34566665 24 799999999999999999999999864
No 55
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=90.59 E-value=0.5 Score=31.96 Aligned_cols=39 Identities=15% Similarity=-0.053 Sum_probs=29.6
Q ss_pred HHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcC
Q 030009 137 IKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 175 (184)
Q Consensus 137 v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~ 175 (184)
|++|..-..-.-..-|+++|..+++|+|.+|.+||+.+-
T Consensus 17 I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~L 55 (71)
T 2di0_A 17 ISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEERL 55 (71)
T ss_dssp HHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccCC
Confidence 334443333344789999999999999999999998754
No 56
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=90.31 E-value=0.37 Score=42.18 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=38.0
Q ss_pred HHHHHHHHhhcCccEEEEEcc-------CCceE---Eee-c-----c--cCCCcEEEEEEccCCcccceeccCC
Q 030009 39 HMELQAASLVTHSNICIHRHM-------SPRWY---IRN-F-----D--YHEARMIHLSYHDGEHYNGVRLKED 94 (184)
Q Consensus 39 ~iEL~Ala~~~~v~I~V~~~~-------~~~~~---i~~-~-----~--~~~~~~i~L~Y~~g~HYdSV~~~~~ 94 (184)
++.+-+||.++++||+|+... +..+- ..+ | + .=.+.+|.|+|..| ||.++....+
T Consensus 213 eiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~LgY~s~-HFsaLV~me~ 285 (390)
T 3dkb_A 213 EIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDSH-HFVPLVTLKD 285 (390)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEEECSS-CEEEEEEBCS
T ss_pred HHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEEeccC-ceeeeeeccc
Confidence 789999999999999999522 11110 011 1 1 11467999999885 9999999864
No 57
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=90.12 E-value=0.46 Score=37.73 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=30.9
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHH
Q 030009 134 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 172 (184)
Q Consensus 134 ~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~ 172 (184)
++.|++.+. -| .|...++++|..+++|++.|+++|+.
T Consensus 164 eekV~~l~~-MG-f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 164 TKKIENLCA-MG-FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHT-TT-CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 356776666 35 58999999999999999999999986
No 58
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=90.12 E-value=0.78 Score=40.86 Aligned_cols=73 Identities=11% Similarity=0.152 Sum_probs=51.9
Q ss_pred CHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCc------e---EEee-c-------ccCCCcEEEEEEccCC
Q 030009 22 PFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPR------W---YIRN-F-------DYHEARMIHLSYHDGE 84 (184)
Q Consensus 22 ~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~------~---~i~~-~-------~~~~~~~i~L~Y~~g~ 84 (184)
.|+.-+..-+.||.==-++.+-+||+++++||.|+...... + ...+ | ..=.+.+|.|+|..|
T Consensus 263 EW~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~g- 341 (454)
T 3zrh_A 263 DWAFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTRG- 341 (454)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEETT-
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEeccc-
Confidence 56666666677887667899999999999999999853211 0 0000 1 111467999999887
Q ss_pred cccceeccCCC
Q 030009 85 HYNGVRLKEDS 95 (184)
Q Consensus 85 HYdSV~~~~~~ 95 (184)
||.++....+.
T Consensus 342 HFsaLV~~~~~ 352 (454)
T 3zrh_A 342 HFSALVAMEND 352 (454)
T ss_dssp EEEEEEEBCCC
T ss_pred ceeeeeecccc
Confidence 99999998653
No 59
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=90.04 E-value=0.64 Score=29.87 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=32.2
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhc
Q 030009 134 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 174 (184)
Q Consensus 134 ~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~ 174 (184)
++.|...|. -.+|.+.++++|...++||+.|-..||+--
T Consensus 8 e~~Ia~L~s--mGfsr~da~~AL~ia~Ndv~~AtNiLlEf~ 46 (56)
T 2juj_A 8 SSEIENLMS--QGYSYQDIQKALVIAQNNIEMAKNILREFV 46 (56)
T ss_dssp HHHHHHHHT--TTCCHHHHHHHHHHTTTCSHHHHHHHHHSC
T ss_pred hHHHHHHHH--cCCCHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 345677776 337999999999999999999999998754
No 60
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=89.61 E-value=0.27 Score=38.67 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=32.6
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHh
Q 030009 134 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 173 (184)
Q Consensus 134 ~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~ 173 (184)
.++|+.++.- | .|..++.++|.+|++|.+.|..+||..
T Consensus 131 ~eaI~rL~~m-G-F~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 131 DQAISRLCEL-G-FERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHTT-T-CCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHc-C-CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4578877773 5 689999999999999999999999964
No 61
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=86.30 E-value=1.6 Score=31.91 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=32.5
Q ss_pred ChhHHHHHHhcCCCCChHHHHHHHHHhCC-CHHHHHHHHHHhcC
Q 030009 133 NAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQG 175 (184)
Q Consensus 133 ~~~~v~~v~~~tG~~d~~~i~~~L~~~~g-did~Ai~~Ll~~~~ 175 (184)
++..+++.+. -| .....++++|..+++ |++.|++.|+.-..
T Consensus 3 d~~~l~~L~~-MG-F~~~~a~~AL~~t~n~~~e~A~~wL~~~~~ 44 (126)
T 2lbc_A 3 DESSVMQLAE-MG-FPLEACRKAVYFTGNMGAEVAFNWIIVHME 44 (126)
T ss_dssp CTHHHHHHHT-TS-SCCHHHHHHHHHHTSCCHHHHHHHHHHGGG
T ss_pred CHHHHHHHHH-cC-CCHHHHHHHHHHcCCCCHHHHHHHHHHhcc
Confidence 4556776666 46 468999999999966 99999999998654
No 62
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=85.28 E-value=1.7 Score=30.12 Aligned_cols=39 Identities=18% Similarity=0.385 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCC
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 176 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~ 176 (184)
.++.|+.- -|+ -..++++..++++|++.|++++|.....
T Consensus 40 ~iR~VlGd-sV~-e~~Lv~ailk~dfD~ekALd~vL~~~~~ 78 (83)
T 1ufz_A 40 HMREVLGD-AVP-DDILTEAILKHKFDVQKALSVVLEQDGS 78 (83)
T ss_dssp HHHHHTTT-TSC-HHHHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHcc-cCC-HHHHHHHHHHhcCCHHHHHHHHHhcccc
Confidence 34555552 344 5555667788999999999999987653
No 63
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=84.86 E-value=0.42 Score=41.68 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=33.0
Q ss_pred ChhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHh
Q 030009 133 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 173 (184)
Q Consensus 133 ~~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~ 173 (184)
.+.+|+.+|. -| ++.+.|+.+|++.+||+|.|+++|+.-
T Consensus 168 ~~~~i~~l~~-MG-f~~~~~~~AL~a~~nn~~~A~e~L~~g 206 (368)
T 1oqy_A 168 YETMLTEIMS-MG-YERERVVAALRASYNNPHRAVEYLLTG 206 (368)
T ss_dssp HHHHHHHHHT-TT-CCSHHHHHHHHHSCSSTTHHHHTTTTS
T ss_pred hHHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3567888887 24 789999999999999999999999753
No 64
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=82.95 E-value=1.5 Score=32.18 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=30.8
Q ss_pred hHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhc
Q 030009 135 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 174 (184)
Q Consensus 135 ~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~ 174 (184)
+.|++++. -| +....++.+|..+++|++.|+++|++-+
T Consensus 10 ~~v~~l~~-MG-Fp~~~~~kAl~~~g~~~e~amewL~~h~ 47 (118)
T 4ae4_A 10 QCVETVVN-MG-YSYECVLRAMKAAGANIEQILDYLFAHG 47 (118)
T ss_dssp HHHHHHHH-TT-CCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-cC-CCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence 35666655 34 5799999999999999999999999853
No 65
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=82.16 E-value=2.1 Score=35.42 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=30.2
Q ss_pred hHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHH
Q 030009 135 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 172 (184)
Q Consensus 135 ~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~ 172 (184)
+.|++.+.- | .|.+.++++|..+++|.+.|+++|+.
T Consensus 217 ~~v~~l~~m-g-f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 217 KKIENLCAA-G-FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHT-T-CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHc-C-CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 456666662 5 58999999999999999999999986
No 66
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=79.40 E-value=1.9 Score=33.53 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=27.1
Q ss_pred HHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHH
Q 030009 138 KLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFL 170 (184)
Q Consensus 138 ~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~L 170 (184)
++++ +.|-.+..-+.++|.+++||++.|+..|
T Consensus 107 ~eL~-s~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 107 QELQ-SLGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHH-HTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHH-hcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 3444 4688999999999999999999999765
No 67
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=77.46 E-value=4.7 Score=29.12 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhc
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 174 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~ 174 (184)
.++..|..+.. |+-.|.++|..+.||+++|-.+|+.-+
T Consensus 16 ~i~~lMeef~~-DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 16 IIRQLMEKFNL-DLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHHHHHHHTTC-CHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred HHHHHHHHHhh-hHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 56788888875 999999999999999999999999854
No 68
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=77.00 E-value=1.2 Score=38.79 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=34.4
Q ss_pred cCChhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhc
Q 030009 131 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 174 (184)
Q Consensus 131 ~~~~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~ 174 (184)
+-+.++|+.++.- | .+..+++++|.+|++|.+.|+++|+.-.
T Consensus 323 ~ee~eaI~rL~~m-G-F~~~~a~~al~a~~~n~e~A~~~L~~~~ 364 (368)
T 1oqy_A 323 PQEKEAIERLKAL-G-FPESLVIQAYFACEKNENLAANFLLSQN 364 (368)
T ss_dssp TTTHHHHHHHHHH-T-CCSHHHHHHTSSSSSCSSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHc-C-CCHHHHHHHHHHcCCCHHHHHHHHhhCc
Confidence 3456678777653 4 6799999999999999999999999754
No 69
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=76.49 E-value=5.6 Score=25.71 Aligned_cols=37 Identities=8% Similarity=-0.073 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHh
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 173 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~ 173 (184)
.++.|..-..--..+.|+.-|+.. |+++++|+.+|+-
T Consensus 20 Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 20 MAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 455666656667899999999987 9999999999863
No 70
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=72.30 E-value=4.2 Score=33.91 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=36.0
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCC
Q 030009 134 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 176 (184)
Q Consensus 134 ~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~ 176 (184)
...|++.|.-|||. ....++.|+.++.|++.|+....+....
T Consensus 16 ~~~i~qF~~iTg~~-~~~A~~~L~~~~WdLe~Al~~ff~~~~~ 57 (270)
T 3bq3_A 16 QEAIESFTSLTKCD-PKVSRKYLQRNHWNINYALNDYYDKEIG 57 (270)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHTTTTCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHcCCCHHHHHHHHHhCccc
Confidence 34689999999985 6788999999999999999998877553
No 71
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=71.98 E-value=9.5 Score=24.41 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHh
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 173 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~ 173 (184)
.|..++..||- +.+--+..|++++-|.+.|+......
T Consensus 10 mv~~~s~~Tgm-n~~~s~~cL~~~~Wd~~~A~~~F~~l 46 (59)
T 1oai_A 10 MLQAFSTQSGM-NLEWSQKCLQDNNWDYTRSAQAFTHL 46 (59)
T ss_dssp HHHHHHHHHCC-CHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56788888997 69999999999999999999987663
No 72
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=69.26 E-value=8.9 Score=24.01 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCC
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 176 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~ 176 (184)
.+|.|++ |. ..+.|.+-|+.-+=|+.-||-.||..+..
T Consensus 15 q~q~VLq--gk-sR~vIirELqrTnLdVN~AvNNlLsRDd~ 52 (53)
T 2qho_B 15 QAQVVLQ--GK-SRSVIIRELQRTNLDVNLAVNNLLSRDDE 52 (53)
T ss_dssp HHHHHST--TC-CHHHHHHHHHHTTTCHHHHHHHHHC----
T ss_pred HHHHHhc--CC-cHHHHHHHHHHhCccHHHHHHHHhccccC
Confidence 3467777 54 48899999999999999999999987643
No 73
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.69 E-value=12 Score=24.01 Aligned_cols=38 Identities=8% Similarity=-0.058 Sum_probs=30.5
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhc
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 174 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~ 174 (184)
.++.|..-..-...+.|+.=|+..+ +++.+++.+|+-+
T Consensus 16 mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr 53 (58)
T 2ejs_A 16 MAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGR 53 (58)
T ss_dssp HHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcC
Confidence 4555555556678999999998877 9999999999865
No 74
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=67.63 E-value=4.9 Score=25.43 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=21.8
Q ss_pred cCCCCC-hHHHHHHHHHhCCCHHHHHHHH
Q 030009 143 GSGCEN-SEKVEEVLLQVGGDVDAAIEFL 170 (184)
Q Consensus 143 ~tG~~d-~~~i~~~L~~~~gdid~Ai~~L 170 (184)
+-|.+| -.-..++|+..+|||.+|++.|
T Consensus 19 ~MGF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 19 SMGFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp TTTCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCCCccccHHHHHHHHccCCHHHHHHHh
Confidence 346654 3456789999999999999976
No 75
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=66.76 E-value=8.7 Score=24.43 Aligned_cols=40 Identities=25% Similarity=0.557 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCC-CHHHHHHHHHHhcCCC
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQGTE 177 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~g-did~Ai~~Ll~~~~~~ 177 (184)
.++..+. -|| |.+++..+|..-++ .++.|++.|+-+...+
T Consensus 12 mlq~L~e-MGF-d~erae~Alk~Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 12 MLQELVN-AGC-DQEMAGRALKQTGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp HHHHHHH-HHC-CHHHHHHHHHHHTSCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHH-cCC-CHHHHHHHHHHhCcccHHHHHHHHHHhcCCC
Confidence 4454444 376 78999999998877 7999999999887764
No 76
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=65.69 E-value=6.1 Score=24.99 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 030009 148 NSEKVEEVLLQVGGDVDAAIEFL 170 (184)
Q Consensus 148 d~~~i~~~L~~~~gdid~Ai~~L 170 (184)
....|+++|+.++||+..|-..|
T Consensus 20 E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 20 EKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Confidence 46789999999999998877654
No 77
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=64.31 E-value=9.1 Score=24.42 Aligned_cols=40 Identities=13% Similarity=-0.004 Sum_probs=33.8
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCC
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 176 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~ 176 (184)
.|.+++..||- +.+--+..|++++-|.+.|+...-.....
T Consensus 9 mv~~~s~~T~M-n~e~S~~cL~~n~Wd~~~A~~~F~~~~~~ 48 (57)
T 2jp7_A 9 LLNKLHLETKL-NAEYTFMLAEQSNWNYEVAIKGFQSSMNG 48 (57)
T ss_dssp HHHHHHHHHCS-CHHHHHHHHHHTTTCSHHHHHHHHHSTTT
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHcC
Confidence 57788889997 69999999999999999999987665333
No 78
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=60.15 E-value=8.6 Score=26.13 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 030009 148 NSEKVEEVLLQVGGDVDAAIEFL 170 (184)
Q Consensus 148 d~~~i~~~L~~~~gdid~Ai~~L 170 (184)
..+.|+++|+.++||+..|-..|
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 36789999999999998887654
No 79
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.33 E-value=19 Score=23.34 Aligned_cols=45 Identities=16% Similarity=0.055 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhcCCCcccccc
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTEEYSVKK 183 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~~~~~~~~~ 183 (184)
.++.|..-..-...+.|+.=|+..+ +++.+|+.+|+-+- ...+|+
T Consensus 16 mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr~--~~~p~~ 60 (61)
T 2ekf_A 16 LAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEGAV--AFMPED 60 (61)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSCCC--CCCCCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcCCC--CCCCCC
Confidence 4555655556668999999997765 99999999997553 444443
No 80
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=50.39 E-value=47 Score=24.21 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=36.2
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCcccc
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNG 88 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYdS 88 (184)
+.||+|+..+- =...++.++...+-.+.| ..++..|.|.... .-+...+.|..|+=++-
T Consensus 14 eNfdeylkalG------v~~~~rk~a~~~kp~~ei-~~~Gd~~~ikt~s--~~k~~~~~F~lGeEfee 72 (132)
T 1mdc_A 14 ENFDGFLKSAG------LSDDKIQALVSDKPTQKM-EANGDSYSNTSTG--GGGAKTVSFKSGVEFDD 72 (132)
T ss_dssp ESHHHHHHTTT------CCHHHHHHHHHCCCEEEE-EEETTEEEEEEES--TTCCEEEEECTTCCEEE
T ss_pred cCHHHHHHHhC------CCHHHHhhhccCCceEEE-EEeCCEEEEEEEc--CCceeEEEEeCCCcEEE
Confidence 58999999884 346778888887755544 4456667765422 12344455555544443
No 81
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=49.46 E-value=58 Score=23.69 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=37.5
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCccc
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYN 87 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYd 87 (184)
+.||+|++.+- =...++.++...+..+.|-+.++..|.|.... .-+...+.|..|+=++
T Consensus 15 eNfdeylkalG------v~~~~rk~a~~~kp~~ei~~~~Gd~~~ikt~s--~~k~~~~~F~lGeEfe 73 (133)
T 1ftp_A 15 TNFEEYMKAIG------VGAIERKAGLALSPVIELEILDGDKFKLTSKT--AIKNTEFTFKLGEEFD 73 (133)
T ss_dssp ESHHHHHHHTT------CCHHHHHHHTTCCCEEEEEECSSSEEEEEEEC--SSCEEEEEEETTCCEE
T ss_pred cCHHHHHHHhC------CCHHHHHHhhcCCceEEEEEcCCCEEEEEEEc--CCeeEEEEEECCCcEE
Confidence 58999999874 44678888888776666655366667765422 2334445565554444
No 82
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=47.14 E-value=67 Score=23.36 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=36.1
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCccc
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYN 87 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYd 87 (184)
+.||+|++.+- =...++.++...+..+.|-+.++..|.|.... .-+...+.|..|+=++
T Consensus 15 eNfdeylkalG------v~~~~rk~a~~~kp~~ei~~~~Gd~~~ikt~s--~~k~~~~~F~lGeEfe 73 (134)
T 1o8v_A 15 EGFDKIMERLG------VDFVTRKMGNLVKPNLIVTDLGGGKYKMRSES--TFKTTECSFKLGEKFK 73 (134)
T ss_dssp ESHHHHHHHHT------CCHHHHHHHHHCCCEEEEEEEETTEEEEEEEC--SSCEEEEEEETTCCEE
T ss_pred cCHHHHHHHcC------CCHHHHHHhhcCCceEEEEEcCCCEEEEEEEc--CCceEEEEEECCCcEE
Confidence 58999999984 34678888888776665555266667665321 1234445555444433
No 83
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=45.30 E-value=26 Score=27.07 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=26.8
Q ss_pred CCCChHHHHHHHHHhCCCHHHHHHHHHHhcC
Q 030009 145 GCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 175 (184)
Q Consensus 145 G~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~~ 175 (184)
|.-.....+++|...+||++.||...+..+.
T Consensus 73 g~~s~~EAr~Aw~~~~Gd~~~Av~~ci~~R~ 103 (162)
T 4dbg_B 73 GAFSCQEARRAWLDRHGNLDEAVEECVRTRR 103 (162)
T ss_dssp CCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 4446799999999999999999999987764
No 84
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=44.60 E-value=72 Score=22.95 Aligned_cols=59 Identities=7% Similarity=0.041 Sum_probs=37.6
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeec-ccCCCcEEEEEEccCCcccc
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNF-DYHEARMIHLSYHDGEHYNG 88 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~-~~~~~~~i~L~Y~~g~HYdS 88 (184)
+.||+|++.+- =...++.++...+..+.| ..++..|.|... . ..+...+.|..|+=++-
T Consensus 12 eNfdeymkalG------v~~~~rk~a~~~kp~~ei-~~~Gd~~~ikt~~s--~~k~~~~~F~lGeEfee 71 (127)
T 1eal_A 12 KNYDEFMKRLA------LPSDAIDKARNLKIISEV-KQDGQNFTWSQQYP--GGHSITNTFTIGKECDI 71 (127)
T ss_dssp SCTTHHHHHHT------CCHHHHHHHTTCCEEEEE-EESSSEEEEEEECS--SSCEEEEEEESSSCEEE
T ss_pred cCHHHHHHHhC------CCHHHHHhhhcCCcEEEE-EEcCCEEEEEEEEC--CCceEEEEEECCCcEEE
Confidence 58999999984 446788888877654444 556666776543 2 23455566666654443
No 85
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=43.55 E-value=22 Score=24.75 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 030009 148 NSEKVEEVLLQVGGDVDAAIEFL 170 (184)
Q Consensus 148 d~~~i~~~L~~~~gdid~Ai~~L 170 (184)
...+|+++|+.++||+..|-..|
T Consensus 59 Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 59 EQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 46889999999999999887654
No 86
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding protein, CRBP, vitamin A, ILBPS, transport protein; 2.00A {Homo sapiens} SCOP: b.60.1.2
Probab=43.16 E-value=68 Score=23.26 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=38.0
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCcccce
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGV 89 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYdSV 89 (184)
+.||+|++.+- =...++.++...+..+.| ..++..|.|.... .-+...+.|..|+=++--
T Consensus 14 eNfdeylkalG------v~~~~rk~a~~~kp~~ei-~~~Gd~~~ikt~s--~~k~~~~~F~lGeefee~ 73 (133)
T 1lpj_A 14 DNFEGYMLALG------IDFATRKIAKLLKPQKVI-EQNGDSFTIHTNS--SLRNYFVKFKVGEEFDED 73 (133)
T ss_dssp ESHHHHHHHHT------CCHHHHHHHTTCCCEEEE-EEETTEEEEEEEC--SSCCEEEEEETTCCEEEE
T ss_pred cCHHHHHHHhC------CCHHHHHHHHhCCCeEEE-EEcCCEEEEEEEe--CCceeEEEeeCCCceEEE
Confidence 58999999984 346788888887755544 5456667765432 123444566666655544
No 87
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=42.48 E-value=0.29 Score=34.28 Aligned_cols=33 Identities=18% Similarity=0.434 Sum_probs=23.5
Q ss_pred HhCccccccccCCCCCHHHHHHhhhcCCccCCHH
Q 030009 7 VKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHM 40 (184)
Q Consensus 7 ~~n~d~F~pFv~~~~~f~~Y~~~m~k~g~WGg~i 40 (184)
|++.+-+..||.- .+.++=+-.|++++.|||.+
T Consensus 27 R~~~~GLs~YVpK-KDLEE~VVs~E~~~~WGG~v 59 (87)
T 2jn4_A 27 RKTATGHSAYVAK-KDLEELIVEMENPALWGGKV 59 (87)
T ss_dssp EECSSCEEEEETT-TTEEEEEEEESSSSSCSSEE
T ss_pred EeCCCceEEEEeC-CcchhheeeeecccccCcEE
Confidence 4455556667764 67777777788899999865
No 88
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=42.45 E-value=79 Score=23.28 Aligned_cols=59 Identities=8% Similarity=0.202 Sum_probs=37.7
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCcccc
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNG 88 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYdS 88 (184)
+.||+|++.+- =...++.+|...+..+.| ..++..|.|.... .-+...+.|..|+=++-
T Consensus 18 eNfdeylkalG------v~~~~rk~a~~~kp~~ei-~~~Gd~~tikt~s--~~k~~~~~F~lGeEfee 76 (141)
T 2rcq_A 18 ENFEGYMKALD------IDFATRKIAVRLTQTKVI-DQDGDNFKTKTTS--TFRNYDVDFTVGVEFDE 76 (141)
T ss_dssp ESHHHHHHHTT------CCHHHHHHHTTCCCEEEE-EEETTEEEEEEEC--SSCEEEEEEETTCCEEE
T ss_pred cCHHHHHHHhC------CCHHHHHHhhcCCcEEEE-EEeCCEEEEEEEc--CCeEEEEEEECCCeEEe
Confidence 58999999984 346778888887755555 4456667765422 23455556666655544
No 89
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=42.17 E-value=84 Score=22.54 Aligned_cols=39 Identities=3% Similarity=0.098 Sum_probs=27.1
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEe
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIR 66 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~ 66 (184)
+.||+|++.|-- ...++.++...+-.+. +..++..|.|.
T Consensus 12 eNfdeymkalGv------~~~~rk~a~~~kp~~e-i~~~Gd~~~ik 50 (125)
T 1p6p_A 12 ENYENFLRTVGL------PEDIIKVAKDVNPVIE-IEQNGNEFVVT 50 (125)
T ss_dssp ESHHHHHHHHTC------CHHHHHHHTTCCCEEE-EEECSSEEEEE
T ss_pred cCHHHHHHHhCC------CHHHHHhhccCCcEEE-EEEcCCEEEEE
Confidence 589999999843 4677888887765444 44456667664
No 90
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=41.35 E-value=75 Score=23.12 Aligned_cols=40 Identities=5% Similarity=0.012 Sum_probs=27.9
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEee
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRN 67 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~ 67 (184)
+.||+|++.+- =...++.++...+..+.| ..++..|.|..
T Consensus 16 eNfdeylkalG------v~~~~rk~a~~~kp~~ei-~~~Gd~~~ikt 55 (135)
T 1vyf_A 16 HNFDAVMSKLG------VSWATRQIGNTVTPTVTF-TMDGDKMTMLT 55 (135)
T ss_dssp ESHHHHHHHTT------CCHHHHHHHTTCCCEEEE-EEETTEEEEEE
T ss_pred cCHHHHHHHcC------CCHHHHHhhccCCceEEE-EEcCCEEEEEE
Confidence 58999999974 346788888887755555 44556676653
No 91
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=40.35 E-value=99 Score=22.46 Aligned_cols=60 Identities=15% Similarity=0.311 Sum_probs=37.1
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCcccce
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGV 89 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYdSV 89 (184)
+.||+|++.|. =...++-++...+..+.| ..++..+.|.... .-+...+.|..|+=++-.
T Consensus 14 eNfdeymkalG------v~~~~rk~~~~~kp~~~I-~~~Gd~~tikt~s--~~k~~~~~F~lGeEfee~ 73 (133)
T 3ppt_A 14 ENFDDYMKAVG------VGMVMRKMANAATPTQEI-KIDGDSWSIKTST--TFKTTDISFTIGQEFDET 73 (133)
T ss_dssp ESHHHHHHHHT------CCHHHHHHHHHCCCEEEE-EEETTEEEEEEEC--SSCEEEEEEETTCCEEEE
T ss_pred cCHHHHHHHhC------CCHHHHhhhhcCCcEEEE-EECCCEEEEEEEe--CCccEEEEEECCCcEEeE
Confidence 58999999984 345677777777755555 4456667765422 234455666665555543
No 92
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=39.95 E-value=15 Score=24.83 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 030009 148 NSEKVEEVLLQVGGDVDAAIEFL 170 (184)
Q Consensus 148 d~~~i~~~L~~~~gdid~Ai~~L 170 (184)
....|+++|+.++||+..|-..|
T Consensus 52 E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 52 ERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Confidence 57899999999999998876543
No 93
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=39.80 E-value=67 Score=23.12 Aligned_cols=57 Identities=11% Similarity=0.133 Sum_probs=34.5
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCcc
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHY 86 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HY 86 (184)
+.||+|++.+- =...++.++...+-.+.| ..++..|.|.... .-+...+.|..|+=+
T Consensus 13 eNfdeylkalG------v~~~~rk~a~~~kp~~ei-~~~Gd~~~ikt~s--~~k~~~~~F~lGeEf 69 (126)
T 2qo4_A 13 ENYEEFLRAIS------LPEEVIKLAKDVKPVTEI-QQNGSDFTITSKT--PGKTVTNSFTIGKEA 69 (126)
T ss_dssp ESHHHHHHHTT------CCHHHHHHTTTCCCEEEE-EEETTEEEEEEEE--TTEEEEEEEETTBEE
T ss_pred cCHHHHHHHcC------CCHHHHHhhccCCceEEE-EEeCCEEEEEEEc--CCceEEEEeeCCCcE
Confidence 58999999984 346778888877755555 4456667665321 123444455544433
No 94
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=39.69 E-value=82 Score=22.63 Aligned_cols=40 Identities=8% Similarity=0.182 Sum_probs=27.4
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEee
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRN 67 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~ 67 (184)
+.||+|++.|-- ...++.++...+..+.| ..++..|.|..
T Consensus 12 eNfdeylkalGv------~~~~rk~a~~~kp~~ei-~~~Gd~~~ikt 51 (125)
T 1mvg_A 12 ENYEEFLKALAL------PEDLIKMARDIKPIVEI-QQKGDDFVVTS 51 (125)
T ss_dssp ESHHHHHHHSSS------CHHHHHHHHTCCCEEEE-EEETTEEEEEE
T ss_pred cCHHHHHHHcCC------CHHHHHhhccCCcEEEE-EEeCCEEEEEE
Confidence 589999998843 46778888877755555 44555676653
No 95
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=39.30 E-value=50 Score=21.74 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHh
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 173 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~ 173 (184)
.+.....+||| +..+.|..|+--+-|+-+|..-.-+.
T Consensus 20 vls~fvrstga-epgLaRDlleGKnWDl~AAL~D~eqL 56 (73)
T 2l2d_A 20 VLSDFVRSTGA-EPGLARDLLEGKNWDLTAALSDYEQL 56 (73)
T ss_dssp HHHHHHHHHCC-CHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CcchhHHhhccCCccHhHHhhhHHHH
Confidence 45788889999 59999999999999999997544443
No 96
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=36.99 E-value=1.1e+02 Score=22.04 Aligned_cols=59 Identities=8% Similarity=0.218 Sum_probs=36.5
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCcccc
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNG 88 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYdS 88 (184)
+.||+|++.+-- ...++.++...+-.+.| ..++..|.|.... .-+...+.|..|+=++-
T Consensus 13 eNfdeylkalGv------~~~~rk~a~~~kp~~ei-~~~Gd~~~ikt~s--~~k~~~~~F~lGeEfee 71 (132)
T 1ifc_A 13 ENYEKFMEKMGI------NVVKRKLGAHDNLKLTI-TQEGNKFTVKESS--NFRNIDVVFELGVDFAY 71 (132)
T ss_dssp ESHHHHHHHHTC------CHHHHHHHTTCCCEEEE-EEETTEEEEEEEC--SSCEEEEEEETTCCEEE
T ss_pred cCHHHHHHHcCC------CHHHHHHhccCCCeEEE-EEeCCEEEEEEEc--CCeEEEEEEECCCcEEE
Confidence 589999999843 46778888877655555 4455667765422 23345556665544443
No 97
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.93 E-value=50 Score=22.17 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=28.4
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHhc
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 174 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~~ 174 (184)
..+.+.++..--=...|.+.+.++++|.|+++..|-++.
T Consensus 13 vfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qES 51 (75)
T 2dae_A 13 VLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQES 51 (75)
T ss_dssp HHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHHH
T ss_pred HHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHhc
Confidence 345555555444466778888899999999999887765
No 98
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=35.68 E-value=26 Score=21.83 Aligned_cols=22 Identities=5% Similarity=0.009 Sum_probs=17.6
Q ss_pred ChHHHHHHHHHhCCCHHHHHHHH
Q 030009 148 NSEKVEEVLLQVGGDVDAAIEFL 170 (184)
Q Consensus 148 d~~~i~~~L~~~~gdid~Ai~~L 170 (184)
....|+++|+.+ ||+..|-..|
T Consensus 22 Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 22 EAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHh-CCHHHHHHHh
Confidence 367899999999 9998876543
No 99
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=34.85 E-value=1.1e+02 Score=22.88 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=35.2
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCccc
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYN 87 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYd 87 (184)
+.||+|++.+-- ...++.++...+..+.| ..++..|.|.... .-+...+.|..|+=++
T Consensus 35 ENfdeylkalGV------~~~~Rk~a~~~kp~~eI-~~~Gd~~tikt~s--t~kt~~~~F~lGeEfe 92 (149)
T 2f73_A 35 ENFEAFMKAIGL------PEELIQKGKDIKGVSEI-VQNGKHFKFTITA--GSKVIQNEFTVGEECE 92 (149)
T ss_dssp ECHHHHHHHTTC------CHHHHHHHTTCCCEEEE-EEETTEEEEEEEE--TTEEEEEEEETTSEEE
T ss_pred cCHHHHHHHcCC------CHHHHhhhccCCceEEE-EEeCCEEEEEEEe--CCeEEEEEEeCCCcEE
Confidence 589999999843 46788888887755554 4456667665321 1234444555444333
No 100
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=34.55 E-value=1.3e+02 Score=21.78 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=36.9
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCcccc
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNG 88 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYdS 88 (184)
+.||+|++.+- =...++.++...+-.+.|-+ ++..|.|.... .-+...+.|..|+=++-
T Consensus 17 eNfdeylkalG------v~~~~rk~a~~~kp~~ei~~-~Gd~~tikt~s--~~k~~~~~F~lGeEfee 75 (135)
T 1b56_A 17 KGFDEYMKELG------VGIALRKMGAMAKPDCIITC-DGKNLTIKTES--TLKTTQFSCTLGEKFEE 75 (135)
T ss_dssp CSHHHHHHHHT------CCHHHHHHHHHCCCEEEEEE-ETTEEEEEEEC--SSCEEEEEEETTCCEEE
T ss_pred cCHHHHHHHcC------CCHHHHHHhhcCCcEEEEEE-cCCEEEEEEEc--CCceEEEEEECCCcEEE
Confidence 68999999984 34677888877766555544 55567665322 23445556665554443
No 101
>3vg7_A Fatty acid-binding protein, liver; lfabp, S-SAD, copper kalpha, palmitic acid, lipid binding PR; HET: PLM; 1.44A {Homo sapiens} PDB: 3b2i_A* 3b2j_A* 3b2k_A* 3b2l_A* 3stk_A* 3stm_X* 3stn_A 3vg2_A* 3vg3_A* 3vg4_A* 3vg5_A* 3vg6_A* 3b2h_A* 2py1_A 2l67_A 2l68_A 2lkk_A* 2ju3_A 2ju7_A 2ju8_A* ...
Probab=34.43 E-value=1.2e+02 Score=22.08 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=38.8
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCccccee
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVR 90 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYdSV~ 90 (184)
+.||+|++.+. =...++-++...+-.+ ++..++..|.|.... ..+...+.|..|+=++-..
T Consensus 16 eNfdeymkalG------v~~~~rk~~~~~kp~~-~I~~~Gd~~~ikt~s--~~k~~~~~F~lGeEfee~t 76 (132)
T 3vg7_A 16 ENFEAFMKAIG------LPEELIQKGKDIKGVS-EIVQNGKHFKFTITA--GSKVIQNEFTVGEECELET 76 (132)
T ss_dssp ESHHHHHHHTT------CCHHHHHHHTTCCCEE-EEEEETTEEEEEEEE--TTEEEEEEEETTSEEEEEC
T ss_pred cCHHHHHHHhC------CCHHHHHHHHhCCCEE-EEEEcCCEEEEEEEE--cCceEEEEEECCCcEEeEC
Confidence 58999999874 3466777777776444 445566667765432 2345667777666665443
No 102
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=33.52 E-value=1.3e+02 Score=21.77 Aligned_cols=59 Identities=14% Similarity=0.261 Sum_probs=37.9
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCcccc
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNG 88 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYdS 88 (184)
+.||+|++.| |=...++-+|...+-.+.| ..++..|.|.... .-+...+.|..|+=++-
T Consensus 16 ENfdeylkal------Gv~~~~Rk~a~~~kp~~~I-~~~Gd~~tikt~s--~~k~~~~~F~lGeEfee 74 (133)
T 4a1y_A 16 ENFDDYMKAL------GVGLATRKLGNLAKPTVII-SKKGDIITIRTES--TFKNTEISFQLGQEFEE 74 (133)
T ss_dssp ESHHHHHHHH------TCCHHHHHHHHHCCCEEEE-EEETTEEEEEEEE--TTEEEEEEECTTBCEEE
T ss_pred cCHHHHHHHc------CCCHHHHHhHhhCCCeEEE-EECCCEEEEEEec--CCccEEEEEEcCCcEEE
Confidence 6899999998 4446777778777655555 4556677775432 23445566666665554
No 103
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=32.94 E-value=1.3e+02 Score=21.76 Aligned_cols=59 Identities=15% Similarity=0.304 Sum_probs=37.2
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCcccc
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNG 88 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYdS 88 (184)
+.||+|++.+- =...++.+|...+-.+.|-+ ++..|.|.... .-+...+.|..|+=++-
T Consensus 14 eNfdeylkalG------v~~~~rk~a~~~kp~~ei~~-~Gd~~~ikt~s--~~k~~~~~F~lGeEfee 72 (134)
T 1crb_A 14 ENFEEYLRALD------VNVALRKIANLLKPDKEIVQ-DGDHMIIRTLS--TFRNYIMDFQVGKEFEE 72 (134)
T ss_dssp ESHHHHHHTTT------CCHHHHHHHHHCCCEEEEEE-ETTEEEEEEEC--SSCCEEEEEETTCCEEE
T ss_pred cCHHHHHHHcC------CCHHHHHHhhcCCceEEEEE-cCCEEEEEEec--CCceEEEEEeCCCeeee
Confidence 58999999874 34677888887766555544 55667765432 23345556666655554
No 104
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=32.46 E-value=14 Score=30.57 Aligned_cols=35 Identities=23% Similarity=0.545 Sum_probs=9.6
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHH
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI 171 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll 171 (184)
....|+..|||. .+.++++|++++|++--||..++
T Consensus 247 ~~~~i~~~~~~~-~~~~~~~l~~~~~~~~~a~~~~~ 281 (306)
T 1nri_A 247 AVRIVMQATDCN-KTLAEQTLLEADQNAKLAIMMIL 281 (306)
T ss_dssp HHHHHHHHSCCC-C----------------------
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHhCCChHHHHHHHH
Confidence 345788889995 67799999999999999998764
No 105
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=32.13 E-value=1.1e+02 Score=22.05 Aligned_cols=58 Identities=12% Similarity=0.260 Sum_probs=35.9
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCccc
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYN 87 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYd 87 (184)
+.||+|++.+- =...++.++...+..+.|-+ ++..|.|.... .-+...+.|..|+=++
T Consensus 14 eNfdeylkalG------v~~~~rk~a~~~kp~~ei~~-~Gd~~~ikt~s--~~k~~~~~F~lGeEfe 71 (131)
T 2a0a_A 14 EKFDEFLDKLG------VGFMVKTAAKTLKPTFEVAI-ENDQYIFRSLS--TFKNTEAKFKLGEEFE 71 (131)
T ss_dssp CSHHHHHHHHT------CCHHHHTGGGTTCCEEEEEE-CSSCEEEEECC--TTSCEEEEECSSCCEE
T ss_pred cCHHHHHHHcC------CCHHHHHHhhcCCceEEEEE-cCCEEEEEEEc--CCeeEEEEEECCCcEE
Confidence 68999999984 34677888877766555544 55667775432 1233445555554444
No 106
>2g7b_A Cellular retinoic acid-binding protein 2; crabpii, retinoids, beta barrel, crystallography, X-RAY, high resolution, schiff base; HET: AZE; 1.18A {Homo sapiens} PDB: 3d97_A* 3fa8_A 3i17_B 3fa7_A* 3fa9_A 3d95_A 3cwk_A 3f8a_A* 3fep_A* 3fek_B 3fa6_A 1bm5_A 1xca_A 3fel_A* 3f9d_A* 3cr6_A* 3fen_A 1blr_A 1cbq_A* 1cbs_A* ...
Probab=31.55 E-value=1.4e+02 Score=21.64 Aligned_cols=58 Identities=14% Similarity=0.339 Sum_probs=34.3
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHh--hcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCccc
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASL--VTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYN 87 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~--~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYd 87 (184)
+.||+|++.|-- ...++.++. .. .|..++..++..|.|.... .-+...+.|..|+=++
T Consensus 13 eNfdeylkalGv------~~~~rk~a~~~~~-kp~~ei~~~Gd~~tikt~s--~~kt~~~~F~lGeEfe 72 (137)
T 2g7b_A 13 ENFEELLKVLGV------NVMLRKIAVAAAS-KPAVEIKQEGDTFYIKTST--TVRTTEINFKVGEEFE 72 (137)
T ss_dssp ECHHHHHHHTTC------CHHHHHHHHHHHS-SCEEEEEEETTEEEEEEEE--TTEEEEEEEETTSCEE
T ss_pred cCHHHHHHHcCC------CHHHHhhhhcccC-CceEEEEECCCEEEEEEEE--CCeEEEEEEecCCceE
Confidence 589999999843 356677776 44 4555555566667765321 1234445555555444
No 107
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=27.53 E-value=84 Score=29.96 Aligned_cols=39 Identities=8% Similarity=0.307 Sum_probs=30.0
Q ss_pred ChhHHHHHHhcCCCCChHHHHHHHHHhCCCHHHHHHHHHHh
Q 030009 133 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 173 (184)
Q Consensus 133 ~~~~v~~v~~~tG~~d~~~i~~~L~~~~gdid~Ai~~Ll~~ 173 (184)
++..+..+.. -| .+.+..+++|++.+||++.||+.|...
T Consensus 720 ~~e~i~~l~~-mG-f~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 720 PEDCVTTIVS-MG-FSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp CHHHHHHHHT-TT-CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHH-cC-CCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 3444544433 35 578999999999999999999999874
No 108
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=27.43 E-value=1.2e+02 Score=23.32 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccC--Ccccceec
Q 030009 40 MELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDG--EHYNGVRL 91 (184)
Q Consensus 40 iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g--~HYdSV~~ 91 (184)
..|.|||..|...+.|+...+ +...+. ......+.|.|..| .||....+
T Consensus 106 DhltaLa~~~~~~c~~hs~~~--~~~~Gi-~~as~~~~I~ht~G~P~HFs~~~~ 156 (160)
T 4a5u_A 106 EHLTALAHLYNFQATVYSDRG--PILFGP-SDTIKRIDITHTTGPPSHFSPGKR 156 (160)
T ss_dssp HHHHHHHHHHTEEEEEEETTE--EEEESC-SSCSEEEEEEEECSSSCEEEESCC
T ss_pred HHHHHHHHHHheEEEEEcCCc--eEEeec-CCCceEEEEEeCCCCCCCccCCcc
Confidence 457899999999999998765 222222 22466788988864 57765544
No 109
>3p6d_A Fatty acid-binding protein, adipocyte; lipocalin, beta barrel, lipid BI protein; HET: ZGB; 1.06A {Homo sapiens} SCOP: b.60.1.2 PDB: 3p6c_A* 3p6e_A* 3p6f_A* 3p6g_A* 3p6h_A* 3rzy_A 2hnx_A* 3fr4_A* 2nnq_A* 1tow_A* 1tou_A* 3fr2_A* 3fr5_A* 1adl_A* 1alb_A 1lib_A 1lic_A* 1lid_A* 1lie_A* 1lif_A* ...
Probab=27.40 E-value=1.8e+02 Score=21.21 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=36.8
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCcccce
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGV 89 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYdSV 89 (184)
+.||+|++.|-- ...++-++...+.. .++..++..+.|.... .-+...+.|..|+=++-.
T Consensus 22 ENfdeymkalGv------~~~~rk~a~~~kp~-~~I~~~Gd~~tikt~s--~~k~~~~~F~lGeEfee~ 81 (139)
T 3p6d_A 22 ENFDDYMKEVGV------GFATRKVAGMAKPN-MIISVNGDVITIKSES--TFKNTEISFILGQEFDEV 81 (139)
T ss_dssp ESHHHHHHHHTC------CHHHHHHHHHCCCE-EEEEEETTEEEEEEEC--SSCCEEEEECTTCCEEEE
T ss_pred cCHHHHHHHhCC------cHHHHHHHHhCCCe-EEEEEcCCEEEEEEEe--ccccEEEEEEcCCcEEee
Confidence 589999999853 35566666666544 4555566667765322 223455667666555544
No 110
>3elx_A Ileal bIle acid-binding protein; ileal bIle acid-bindign protein, zebrafish, cholic acid, LIP binding, transport, lipid binding protein; 1.60A {Danio rerio} SCOP: b.60.1.0 PDB: 3elz_A* 3em0_A*
Probab=26.00 E-value=1.4e+02 Score=21.85 Aligned_cols=62 Identities=6% Similarity=0.050 Sum_probs=39.2
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCccccee
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVR 90 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYdSV~ 90 (184)
+.||+|++.|- =...++-++...+-.+.| ..++..+.|..... .-+...+.|..|+=++-..
T Consensus 16 ENfdeymkalG------v~~~~Rk~~~~~kp~~~I-~~~Gd~~tikt~s~-~~k~~~~~F~lGeEfee~t 77 (138)
T 3elx_A 16 EGYEPFCKLIG------IPDDVIAKGRDFKLVTEI-VQNGDDFTWTQYYP-NNHVVTNKFIVGKESDMET 77 (138)
T ss_dssp ESHHHHHHHTT------CCHHHHHHTTTCCCEEEE-EEETTEEEEEEEEG-GGEEEEEEEETTSCEEEEC
T ss_pred cCHHHHHHHhC------CCHHHHhHHhcCCceEEE-EEcCCEEEEEEEEc-CCceEEEEEEcCCcEEeec
Confidence 58999999874 345677777776654444 55666677754321 1355667777776666543
No 111
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=25.56 E-value=1.4e+02 Score=21.46 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=27.7
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEee
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRN 67 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~ 67 (184)
+.||+|++.+- =...++.++...+-.+.|-+ ++..|.|..
T Consensus 14 eNfdeylkalG------v~~~~rk~a~~~kp~~ei~~-~Gd~~~ikt 53 (131)
T 1fdq_A 14 QNFDEYMKALG------VGFATRQVGNVTKPTVIISQ-EGDKVVIRT 53 (131)
T ss_dssp ESHHHHHHHTT------CCHHHHHHHHHCCCEEEEEE-ETTEEEEEE
T ss_pred cCHHHHHHHcC------CCHHHHHHHhcCCCeEEEEE-cCCEEEEEE
Confidence 58999999984 34677888887766555544 555676643
No 112
>3q6l_A Fatty acid-binding protein, adipocyte; lipid chaperone, lipid binding protein; 1.40A {Homo sapiens} PDB: 2q9s_A* 2qm9_A*
Probab=24.12 E-value=2.2e+02 Score=21.15 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=36.7
Q ss_pred CCHHHHHHhhhcCCccCCHHHHHHHHhhcCccEEEEEccCCceEEeecccCCCcEEEEEEccCCcccce
Q 030009 21 VPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGV 89 (184)
Q Consensus 21 ~~f~~Y~~~m~k~g~WGg~iEL~Ala~~~~v~I~V~~~~~~~~~i~~~~~~~~~~i~L~Y~~g~HYdSV 89 (184)
+.||+|++.|-- ...++-++...+..+ ++..++..+.|.... .-+...+.|..|+=++-.
T Consensus 35 ENfdeymkalGv------~~~~Rk~a~~~kp~~-eI~~~Gd~~tikt~s--t~kt~~~~F~lGeEfee~ 94 (152)
T 3q6l_A 35 ENFDDYMKEVGV------GFATRKVAGMAKPNM-IISVNGDVITIKSES--TFKNTEISFILGQEFDEV 94 (152)
T ss_dssp ESHHHHHHHHTC------CHHHHHHHHHCCCEE-EEEEETTEEEEEEEC--SSCCEEEEECTTCCEEEE
T ss_pred cCHHHHHHHhCC------CHHHHHHHHhCCCeE-EEEEcCCEEEEEEEe--ccccEEEEEEcCCcEEee
Confidence 689999999853 356666676666544 445566667765321 223455667666555544
No 113
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=21.23 E-value=85 Score=17.06 Aligned_cols=25 Identities=40% Similarity=0.683 Sum_probs=14.4
Q ss_pred cCCCC--ChHHHHHHHHHhCCCHHHHHHHHHHhc
Q 030009 143 GSGCE--NSEKVEEVLLQVGGDVDAAIEFLIAEQ 174 (184)
Q Consensus 143 ~tG~~--d~~~i~~~L~~~~gdid~Ai~~Ll~~~ 174 (184)
++|++ |...|.++|..| |+-..++.
T Consensus 3 gsgvtrfdekqieelldnc-------ietfvaek 29 (31)
T 4h62_V 3 GSGVTRFDEKQIEELLDNC-------IETFVAEK 29 (31)
T ss_dssp -------CHHHHHHHHHHH-------HHHHHTCC
T ss_pred CCccccccHHHHHHHHHHH-------HHHHHhhc
Confidence 34544 778888888777 76666543
No 114
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=20.64 E-value=73 Score=19.82 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=20.0
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHh
Q 030009 136 SIKLVMAGSGCENSEKVEEVLLQV 159 (184)
Q Consensus 136 ~v~~v~~~tG~~d~~~i~~~L~~~ 159 (184)
.++.+...+||+-..+|+++|++.
T Consensus 17 rL~~lA~~~~rs~s~lireAi~~y 40 (58)
T 2ay0_A 17 RIKSAATRIDRTPHWLIKQAIFSY 40 (58)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467888889999999999988765
Done!