Your job contains 1 sequence.
>030010
MFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRS
GRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSN
GVPRGGQGRGGAFRRLRGGGGGGGRGFGRGRGRGRERNEKISAEDLDADLDKYYSEASEA
MQTN
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030010
(184 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2181763 - symbol:AT5G02530 species:3702 "Arabi... 410 4.1e-45 2
TAIR|locus:2205293 - symbol:AT1G66260 species:3702 "Arabi... 334 2.7e-34 2
TAIR|locus:2151779 - symbol:ALY4 "ALWAYS EARLY 4" species... 329 1.9e-33 2
UNIPROTKB|Q3T0I4 - symbol:ALYREF "THO complex subunit 4" ... 293 1.4e-29 2
UNIPROTKB|F1PL92 - symbol:ALYREF "Uncharacterized protein... 293 1.4e-29 2
MGI|MGI:1341044 - symbol:Alyref "Aly/REF export factor" s... 292 1.8e-29 2
UNIPROTKB|E1C2L5 - symbol:THOC4 "Uncharacterized protein"... 285 2.3e-29 2
UNIPROTKB|E9PB61 - symbol:ALYREF "THO complex subunit 4" ... 288 4.7e-29 2
UNIPROTKB|Q86V81 - symbol:ALYREF "THO complex subunit 4" ... 288 4.7e-29 2
ZFIN|ZDB-GENE-070928-29 - symbol:alyref "Aly/REF export f... 288 4.7e-29 2
FB|FBgn0010774 - symbol:Ref1 "RNA and export factor bindi... 271 5.8e-27 2
MGI|MGI:1913144 - symbol:Alyref2 "Aly/REF export factor 2... 274 6.8e-24 1
RGD|1594679 - symbol:Thoc4 "THO complex 4" species:10116 ... 241 2.1e-20 1
DICTYBASE|DDB_G0285361 - symbol:DDB_G0285361 "RNA-binding... 229 4.0e-19 1
POMBASE|SPBC1D7.04 - symbol:mlo3 "RNA binding protein Mlo... 161 2.8e-15 2
ASPGD|ASPL0000065384 - symbol:AN7706 species:162425 "Emer... 178 4.2e-15 2
FB|FBgn0032439 - symbol:Ref2 "RNA and export factor bindi... 174 2.7e-13 1
WB|WBGene00000120 - symbol:aly-1 species:6239 "Caenorhabd... 130 4.2e-12 2
UNIPROTKB|G4MKS1 - symbol:MGG_06668 "Uncharacterized prot... 138 2.5e-11 2
WB|WBGene00000121 - symbol:aly-2 species:6239 "Caenorhabd... 117 2.5e-10 2
UNIPROTKB|Q5F4B6 - symbol:POLDIP3 "Uncharacterized protei... 153 2.8e-10 1
GENEDB_PFALCIPARUM|PFF0760w - symbol:PFF0760w "RNA and ex... 145 3.2e-10 1
MGI|MGI:1921076 - symbol:Poldip3 "polymerase (DNA-directe... 150 6.1e-10 1
RGD|1311073 - symbol:Poldip3 "polymerase (DNA-directed), ... 150 6.1e-10 1
UNIPROTKB|A7YW33 - symbol:POLDIP3 "Polymerase (DNA-direct... 150 6.1e-10 1
UNIPROTKB|F1PS15 - symbol:POLDIP3 "Uncharacterized protei... 150 6.1e-10 1
UNIPROTKB|Q9BY77 - symbol:POLDIP3 "Polymerase delta-inter... 150 6.1e-10 1
UNIPROTKB|E2RT45 - symbol:POLDIP3 "Uncharacterized protei... 150 6.6e-10 1
WB|WBGene00000122 - symbol:aly-3 species:6239 "Caenorhabd... 123 1.5e-09 2
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 139 4.1e-09 1
UNIPROTKB|H0YN19 - symbol:MYEF2 "Myelin expression factor... 138 5.4e-09 1
TAIR|locus:2075860 - symbol:U11/U12-31K "U11/U12-31K" spe... 136 6.5e-09 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 131 9.7e-09 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 131 9.7e-09 1
FB|FBgn0030956 - symbol:CG18259 species:7227 "Drosophila ... 139 1.2e-08 1
FB|FBgn0030959 - symbol:CG6961 species:7227 "Drosophila m... 139 1.2e-08 1
ASPGD|ASPL0000011897 - symbol:AN3739 species:162425 "Emer... 139 1.2e-08 1
UNIPROTKB|F1PIN4 - symbol:MYEF2 "Uncharacterized protein"... 138 1.3e-08 1
UNIPROTKB|F1LSJ5 - symbol:Hnrpm "Protein Hnrpm" species:1... 132 1.4e-08 1
UNIPROTKB|B4DQI6 - symbol:TRA2A "cDNA FLJ50614, highly si... 129 1.6e-08 1
UNIPROTKB|B4DUA9 - symbol:TRA2A "Transformer-2 protein ho... 129 1.6e-08 1
UNIPROTKB|F1PIL7 - symbol:MYEF2 "Uncharacterized protein"... 138 1.6e-08 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 123 1.7e-08 2
UNIPROTKB|F1SN63 - symbol:MYEF2 "Uncharacterized protein"... 138 1.8e-08 1
UNIPROTKB|F1NIP6 - symbol:MYEF2 "Uncharacterized protein"... 138 1.9e-08 1
UNIPROTKB|A6QQP0 - symbol:MYEF2 "MYEF2 protein" species:9... 138 1.9e-08 1
UNIPROTKB|D4AB08 - symbol:Myef2 "Protein Myef2" species:1... 138 2.0e-08 1
UNIPROTKB|B4DMM2 - symbol:POLDIP3 "Polymerase delta-inter... 128 2.0e-08 1
UNIPROTKB|D4A1T2 - symbol:Myef2 "Protein Myef2" species:1... 138 2.0e-08 1
RGD|1306547 - symbol:Myef2 "myelin expression factor 2" s... 138 2.1e-08 1
UNIPROTKB|Q9P2K5 - symbol:MYEF2 "Myelin expression factor... 138 2.2e-08 1
UNIPROTKB|F1PIK6 - symbol:MYEF2 "Uncharacterized protein"... 138 2.2e-08 1
UNIPROTKB|Q5ZHY2 - symbol:MYEF2 "Uncharacterized protein"... 138 2.3e-08 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 124 2.7e-08 2
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 123 4.5e-08 2
UNIPROTKB|E2R4B2 - symbol:TRA2A "Uncharacterized protein"... 129 4.9e-08 1
UNIPROTKB|Q06AA6 - symbol:TRA2A "Uncharacterized protein"... 129 4.9e-08 1
UNIPROTKB|Q2KJ71 - symbol:TRA2A "Transformer 2 alpha homo... 129 5.0e-08 1
MGI|MGI:1933972 - symbol:Tra2a "transformer 2 alpha homol... 129 5.0e-08 1
UNIPROTKB|Q13595 - symbol:TRA2A "Transformer-2 protein ho... 129 5.1e-08 1
RGD|1562563 - symbol:Tra2a "transformer 2 alpha homolog (... 129 5.1e-08 1
UNIPROTKB|F1MYI2 - symbol:HNRNPM "Uncharacterized protein... 134 5.1e-08 1
UNIPROTKB|F1NS10 - symbol:HNRNPM "Uncharacterized protein... 133 6.7e-08 1
UNIPROTKB|E1C875 - symbol:TRA2A "Uncharacterized protein"... 123 6.8e-08 1
RGD|620369 - symbol:Hnrnpm "heterogeneous nuclear ribonuc... 134 7.1e-08 1
UNIPROTKB|F1LV13 - symbol:Hnrpm "Protein Hnrpm" species:1... 134 7.1e-08 1
UNIPROTKB|Q62826 - symbol:Hnrnpm "Heterogeneous nuclear r... 134 7.1e-08 1
UNIPROTKB|F1SA50 - symbol:HNRNPM "Uncharacterized protein... 134 7.3e-08 1
UNIPROTKB|F1SJQ4 - symbol:POLDIP3 "Uncharacterized protei... 129 7.7e-08 1
UNIPROTKB|E2RMR3 - symbol:HNRNPM "Uncharacterized protein... 134 7.8e-08 1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 122 8.7e-08 1
UNIPROTKB|Q5ZL80 - symbol:HNRNPM "Uncharacterized protein... 133 9.4e-08 1
ASPGD|ASPL0000073559 - symbol:AN10574 species:162425 "Eme... 136 9.5e-08 1
ZFIN|ZDB-GENE-040426-1391 - symbol:tra2a "transformer-2 a... 126 1.2e-07 1
UNIPROTKB|F1MY44 - symbol:HNRNPM "Uncharacterized protein... 132 1.3e-07 1
UNIPROTKB|P52272 - symbol:HNRNPM "Heterogeneous nuclear r... 132 1.3e-07 1
POMBASE|SPAC328.05 - symbol:SPAC328.05 "RNA-binding prote... 129 1.4e-07 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 131 1.4e-07 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 120 1.4e-07 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 119 1.8e-07 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 119 1.8e-07 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 119 1.8e-07 1
MGI|MGI:1926465 - symbol:Hnrnpm "heterogeneous nuclear ri... 130 2.0e-07 1
UNIPROTKB|G4MR34 - symbol:MGG_09885 "Cleavage stimulation... 124 2.2e-07 1
UNIPROTKB|F1NPM7 - symbol:TRA2A "Uncharacterized protein"... 123 2.3e-07 1
SGD|S000000517 - symbol:GBP2 "Poly(A+) RNA-binding protei... 125 3.2e-07 1
ASPGD|ASPL0000076347 - symbol:AN4505 species:162425 "Emer... 116 3.8e-07 1
UNIPROTKB|B5G279 - symbol:NCBP2 "Nuclear cap-binding prot... 116 3.8e-07 1
UNIPROTKB|P52299 - symbol:ncbp2 "Nuclear cap-binding prot... 116 3.8e-07 1
UNIPROTKB|Q2KGN9 - symbol:MGCH7_ch7g296 "Putative unchara... 123 4.3e-07 1
UNIPROTKB|Q5ZKR5 - symbol:NCBP2 "Nuclear cap-binding prot... 115 4.8e-07 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 126 4.8e-07 1
ZFIN|ZDB-GENE-051120-114 - symbol:myef2 "myelin expressio... 124 6.2e-07 1
WB|WBGene00009141 - symbol:ncbp-2 species:6239 "Caenorhab... 113 7.8e-07 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 113 7.8e-07 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 113 7.8e-07 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 121 8.1e-07 1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 117 8.8e-07 1
UNIPROTKB|J9NZ20 - symbol:ZCRB1 "Uncharacterized protein"... 115 8.8e-07 1
MGI|MGI:1914447 - symbol:Zcrb1 "zinc finger CCHC-type and... 115 8.8e-07 1
WARNING: Descriptions of 288 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2181763 [details] [associations]
symbol:AT5G02530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
KO:K12881 HSSP:O08583 eggNOG:NOG316507 HOGENOM:HOG000239962
OMA:IRNRPAI UniGene:At.27625 UniGene:At.72858 EMBL:AY140010
EMBL:BT006323 IPI:IPI00538790 RefSeq:NP_195873.2
ProteinModelPortal:Q8L719 SMR:Q8L719 IntAct:Q8L719 STRING:Q8L719
PaxDb:Q8L719 PRIDE:Q8L719 EnsemblPlants:AT5G02530.1 GeneID:831923
KEGG:ath:AT5G02530 TAIR:At5g02530 InParanoid:Q8L719
PhylomeDB:Q8L719 ProtClustDB:CLSN2918011 ArrayExpress:Q8L719
Genevestigator:Q8L719 Uniprot:Q8L719
Length = 292
Score = 410 (149.4 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 86/111 (77%), Positives = 94/111 (84%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74
G S+IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRY IHYDRSGRSKGTAEVV+SRR
Sbjct: 99 GGGSSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRR 158
Query: 75 ADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAP---AANVNFGNSNGV 122
DA+AAVKRYNNVQLDGK MKIEIVGTN++ A P A + F +NG+
Sbjct: 159 GDALAAVKRYNNVQLDGKLMKIEIVGTNLSA-PALPILATAQIPFP-TNGI 207
Score = 81 (33.6 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 158 NEKISAEDLDADLDKYYSEASE 179
+E +SAEDLDA+LDKY+ EA E
Sbjct: 269 DENVSAEDLDAELDKYHKEAME 290
>TAIR|locus:2205293 [details] [associations]
symbol:AT1G66260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K12881 HSSP:O08583
HOGENOM:HOG000239962 ProtClustDB:CLSN2689042 EMBL:AF410310
EMBL:AY149925 IPI:IPI00520633 RefSeq:NP_001185329.1
RefSeq:NP_564871.1 UniGene:At.25606 ProteinModelPortal:Q94EH8
SMR:Q94EH8 STRING:Q94EH8 PaxDb:Q94EH8 PRIDE:Q94EH8
EnsemblPlants:AT1G66260.1 EnsemblPlants:AT1G66260.2 GeneID:842943
KEGG:ath:AT1G66260 TAIR:At1g66260 eggNOG:NOG257473
InParanoid:Q94EH8 OMA:HAEAMNI PhylomeDB:Q94EH8
Genevestigator:Q94EH8 Uniprot:Q94EH8
Length = 295
Score = 334 (122.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 62/104 (59%), Positives = 84/104 (80%)
Query: 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADA 77
S +E GT +YI+NLD GV+NEDI+EL++E+G+LKRY+IHYD++GR G+AEVVY RR+DA
Sbjct: 101 SGVEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDA 160
Query: 78 VAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNG 121
+ A+++YNNV LDG+PMK+EI+G N T +A AA VN NG
Sbjct: 161 IQAMRKYNNVLLDGRPMKLEILGGN--TESAPVAARVNVTGLNG 202
Score = 54 (24.1 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 159 EKISAEDLDADLDKYYSEA 177
EK SA DLD DL+ Y++EA
Sbjct: 274 EK-SAADLDKDLESYHAEA 291
>TAIR|locus:2151779 [details] [associations]
symbol:ALY4 "ALWAYS EARLY 4" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715
Pfam:PF13865 KO:K12881 HOGENOM:HOG000239962 EMBL:BT010588
EMBL:AK227931 IPI:IPI00538146 RefSeq:NP_198588.2 UniGene:At.22374
ProteinModelPortal:Q6NQ72 SMR:Q6NQ72 STRING:Q6NQ72 PRIDE:Q6NQ72
EnsemblPlants:AT5G37720.1 GeneID:833750 KEGG:ath:AT5G37720
TAIR:At5g37720 InParanoid:Q6NQ72 OMA:EVERYAI PhylomeDB:Q6NQ72
ProtClustDB:CLSN2689042 Genevestigator:Q6NQ72 Uniprot:Q6NQ72
Length = 288
Score = 329 (120.9 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 61/110 (55%), Positives = 85/110 (77%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
+A AS +E GT+L+++NLD GV+NEDI+ELFSE+G+++RY+IHYD++GR GTAEVVY
Sbjct: 82 RAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYP 141
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPA-ANVNFGNSNG 121
RR+DA A+K+YNNV LDG+PM++EI+G N ++ NVN NG
Sbjct: 142 RRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNVNVTGLNG 191
Score = 51 (23.0 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 159 EKISAEDLDADLDKYYSEA 177
EK SA DLD DL+ Y+++A
Sbjct: 267 EK-SAADLDKDLESYHADA 284
>UNIPROTKB|Q3T0I4 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0046784 "intronless viral mRNA
export from host nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000346 "transcription export complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 InterPro:IPR025715 Pfam:PF13865
GO:GO:0000346 GO:GO:0046784 KO:K12881 HSSP:Q9NQ94 eggNOG:NOG316507
HOGENOM:HOG000239962 OrthoDB:EOG4MW87F EMBL:BC102384
IPI:IPI00710588 RefSeq:NP_001030494.1 UniGene:Bt.48992
ProteinModelPortal:Q3T0I4 SMR:Q3T0I4 STRING:Q3T0I4 PRIDE:Q3T0I4
Ensembl:ENSBTAT00000011202 GeneID:537706 KEGG:bta:537706 CTD:10189
GeneTree:ENSGT00410000025615 InParanoid:Q3T0I4 OMA:IRNRPAI
NextBio:20877198 Uniprot:Q3T0I4
Length = 257
Score = 293 (108.2 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 57/103 (55%), Positives = 79/103 (76%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74
G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+
Sbjct: 97 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 156
Query: 75 ADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
ADA+ A+K+YN V LDG+PM I++V + I T+ PA +VN G
Sbjct: 157 ADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQRR-PAQSVNRG 198
Score = 50 (22.7 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 159 EKISAEDLDADLDKY 173
+++SAE+LDA LD Y
Sbjct: 236 QQLSAEELDAQLDAY 250
>UNIPROTKB|F1PL92 [details] [associations]
symbol:ALYREF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715
Pfam:PF13865 GeneTree:ENSGT00410000025615 OMA:IRNRPAI
EMBL:AAEX03006169 Ensembl:ENSCAFT00000009466 Uniprot:F1PL92
Length = 257
Score = 293 (108.2 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 57/103 (55%), Positives = 79/103 (76%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74
G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+
Sbjct: 97 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 156
Query: 75 ADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
ADA+ A+K+YN V LDG+PM I++V + I T+ PA +VN G
Sbjct: 157 ADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQRR-PAQSVNRG 198
Score = 50 (22.7 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 159 EKISAEDLDADLDKY 173
+++SAE+LDA LD Y
Sbjct: 236 QQLSAEELDAQLDAY 250
>MGI|MGI:1341044 [details] [associations]
symbol:Alyref "Aly/REF export factor" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000346 "transcription export complex" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0006810 "transport" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1341044 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH466558
GO:GO:0003697 GO:GO:0051028 EMBL:AL663030 InterPro:IPR025715
Pfam:PF13865 KO:K12881 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 OrthoDB:EOG4MW87F CTD:10189
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:U89876 EMBL:AJ252140
EMBL:BC120588 EMBL:BC137658 EMBL:AK035721 IPI:IPI00114407
IPI:IPI00122339 RefSeq:NP_035698.1 UniGene:Mm.1886 PDB:1NO8
PDBsum:1NO8 ProteinModelPortal:O08583 SMR:O08583 DIP:DIP-59977N
STRING:O08583 PhosphoSite:O08583 PaxDb:O08583 PRIDE:O08583
Ensembl:ENSMUST00000026125 GeneID:21681 KEGG:mmu:21681
UCSC:uc007mtl.1 InParanoid:Q0VBL5 EvolutionaryTrace:O08583
NextBio:300988 Bgee:O08583 CleanEx:MM_THOC4 Genevestigator:O08583
GermOnline:ENSMUSG00000025134 Uniprot:O08583
Length = 255
Score = 292 (107.8 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 56/103 (54%), Positives = 79/103 (76%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74
G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+
Sbjct: 96 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 155
Query: 75 ADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
ADA+ A+K+YN V LDG+PM I++V + I T+ PA ++N G
Sbjct: 156 ADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQRR-PAQSINRG 197
Score = 50 (22.7 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 159 EKISAEDLDADLDKY 173
+++SAE+LDA LD Y
Sbjct: 234 QQLSAEELDAQLDAY 248
>UNIPROTKB|E1C2L5 [details] [associations]
symbol:THOC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000346
"transcription export complex" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 GO:GO:0071013
InterPro:IPR025715 Pfam:PF13865 GO:GO:0000346
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:AADN02053597
IPI:IPI00576073 ProteinModelPortal:E1C2L5
Ensembl:ENSGALT00000011710 Uniprot:E1C2L5
Length = 258
Score = 285 (105.4 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 56/108 (51%), Positives = 79/108 (73%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74
G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+
Sbjct: 95 GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 154
Query: 75 ADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGV 122
ADA+ A+K+YN V LDG+PM I++V + I T+ PA + N G+
Sbjct: 155 ADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQRR-PAQRNHSVNRGGM 201
Score = 56 (24.8 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 159 EKISAEDLDADLDKYYSEASEA 180
+++SAE+LDA LD Y + S A
Sbjct: 237 QQLSAEELDAQLDAYNARVSAA 258
>UNIPROTKB|E9PB61 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC145207 InterPro:IPR025715 Pfam:PF13865 KO:K12881 CTD:10189
OMA:IRNRPAI RefSeq:NP_005773.3 UniGene:Hs.534385 DNASU:10189
GeneID:10189 KEGG:hsa:10189 HGNC:HGNC:19071 GenomeRNAi:10189
NextBio:38562 IPI:IPI00328840 ProteinModelPortal:E9PB61 SMR:E9PB61
IntAct:E9PB61 PRIDE:E9PB61 Ensembl:ENST00000505490 UCSC:uc002kbu.2
ArrayExpress:E9PB61 Bgee:E9PB61 Uniprot:E9PB61
Length = 264
Score = 288 (106.4 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 56/103 (54%), Positives = 78/103 (75%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74
G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+
Sbjct: 104 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 163
Query: 75 ADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
ADA+ A+K+YN V LDG+PM I++V + I + PA +VN G
Sbjct: 164 ADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQRR-PAQSVNRG 205
Score = 50 (22.7 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 159 EKISAEDLDADLDKY 173
+++SAE+LDA LD Y
Sbjct: 243 QQLSAEELDAQLDAY 257
>UNIPROTKB|Q86V81 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000346 "transcription export complex" evidence=IDA]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC145207 GO:GO:0000398
GO:GO:0071013 Reactome:REACT_1788 GO:GO:0006369 InterPro:IPR025715
Pfam:PF13865 GO:GO:0031124 Reactome:REACT_78 GO:GO:0000346
GO:GO:0046784 KO:K12881 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 CTD:10189 EMBL:BC052302 EMBL:AF047002
IPI:IPI01010794 RefSeq:NP_005773.3 UniGene:Hs.534385 PDB:3ULH
PDBsum:3ULH ProteinModelPortal:Q86V81 SMR:Q86V81 DIP:DIP-32711N
IntAct:Q86V81 MINT:MINT-5001811 STRING:Q86V81 PhosphoSite:Q86V81
DMDM:48429165 PaxDb:Q86V81 PRIDE:Q86V81 DNASU:10189
Ensembl:ENST00000331204 GeneID:10189 KEGG:hsa:10189
GeneCards:GC17M079849 HGNC:HGNC:19071 HPA:CAB016281 HPA:HPA019799
MIM:604171 neXtProt:NX_Q86V81 PharmGKB:PA134925107
InParanoid:Q86V81 GenomeRNAi:10189 NextBio:38562 PMAP-CutDB:Q86V81
ArrayExpress:Q86V81 Bgee:Q86V81 CleanEx:HS_THOC4
Genevestigator:Q86V81 GermOnline:ENSG00000183684 Uniprot:Q86V81
Length = 257
Score = 288 (106.4 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 56/103 (54%), Positives = 78/103 (75%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74
G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+
Sbjct: 97 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 156
Query: 75 ADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
ADA+ A+K+YN V LDG+PM I++V + I + PA +VN G
Sbjct: 157 ADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQRR-PAQSVNRG 198
Score = 50 (22.7 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 159 EKISAEDLDADLDKY 173
+++SAE+LDA LD Y
Sbjct: 236 QQLSAEELDAQLDAY 250
>ZFIN|ZDB-GENE-070928-29 [details] [associations]
symbol:alyref "Aly/REF export factor" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070928-29 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:CU693479
IPI:IPI00868115 Ensembl:ENSDART00000108647 ArrayExpress:F1Q9D1
Bgee:F1Q9D1 Uniprot:F1Q9D1
Length = 280
Score = 288 (106.4 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 54/103 (52%), Positives = 76/103 (73%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74
G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+
Sbjct: 116 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 175
Query: 75 ADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
ADA+ A+K+YN V LDG+PM I++V + I + P +N G
Sbjct: 176 ADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQRRTPMQGLNRG 218
Score = 50 (22.7 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 159 EKISAEDLDADLDKY 173
+++SAE+LDA LD Y
Sbjct: 259 QQLSAEELDAQLDAY 273
>FB|FBgn0010774 [details] [associations]
symbol:Ref1 "RNA and export factor binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0031965 "nuclear membrane"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005654 GO:GO:0000166
GO:GO:0031965 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0003713
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR025715
Pfam:PF13865 KO:K12881 HSSP:O08583 eggNOG:NOG316507
GeneTree:ENSGT00410000025615 OMA:IRNRPAI ChiTaRS:ALYREF
EMBL:AF172637 RefSeq:NP_651968.1 UniGene:Dm.3104 SMR:Q9V3E7
IntAct:Q9V3E7 MINT:MINT-318070 STRING:Q9V3E7
EnsemblMetazoa:FBtr0081642 GeneID:44029 KEGG:dme:Dmel_CG1101
UCSC:CG1101-RA CTD:44029 FlyBase:FBgn0010774 InParanoid:Q9V3E7
OrthoDB:EOG470S0M GenomeRNAi:44029 NextBio:836635 Uniprot:Q9V3E7
Length = 266
Score = 271 (100.5 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 49/89 (55%), Positives = 70/89 (78%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T+L + NLDYGVSN DIKELF++ G +K+ ++HYDRSGRS GTA+V++ RRADA+ A+K+
Sbjct: 109 TRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLGTADVIFERRADALKAIKQ 168
Query: 84 YNNVQLDGKPMKIEIVGTNIATRTAAPAA 112
Y+ V LDG+PM I++ +++A T AA
Sbjct: 169 YHGVPLDGRPMTIQLAVSDVAVLTRPVAA 197
Score = 47 (21.6 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 162 SAEDLDADLDKYYSE 176
+AE+LDA+LD Y ++
Sbjct: 249 TAEELDAELDSYIND 263
>MGI|MGI:1913144 [details] [associations]
symbol:Alyref2 "Aly/REF export factor 2" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1913144 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 InterPro:IPR025715
Pfam:PF13865 KO:K12881 EMBL:AJ252141 EMBL:AK048243 IPI:IPI00311103
IPI:IPI00377350 RefSeq:NP_062357.3 UniGene:Mm.389208 PDB:2F3J
PDB:2KT5 PDB:2YKA PDBsum:2F3J PDBsum:2KT5 PDBsum:2YKA
ProteinModelPortal:Q9JJW6 SMR:Q9JJW6 IntAct:Q9JJW6 STRING:Q9JJW6
PhosphoSite:Q9JJW6 PaxDb:Q9JJW6 PRIDE:Q9JJW6 GeneID:56009
KEGG:mmu:56009 CTD:56009 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 InParanoid:Q9JJW6 OrthoDB:EOG4MW87F
EvolutionaryTrace:Q9JJW6 NextBio:311734 CleanEx:MM_REFBP2
Genevestigator:Q9JJW6 GermOnline:ENSMUSG00000060244 Uniprot:Q9JJW6
Length = 218
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 64/159 (40%), Positives = 89/159 (55%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74
G +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTA+V + RR
Sbjct: 66 GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERR 125
Query: 75 ADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPXXXXXXXXXXX 134
ADA+ A+K+Y V LDG+PM I++V + I + PA + GN G+
Sbjct: 126 ADALKAMKQYKGVPLDGRPMDIQLVASQIDPQRR-PAQS---GNRGGM---------TRS 172
Query: 135 XXXXXXXXXXXXXXXXXXXXXXXNEKISAEDLDADLDKY 173
+++SAE+LDA LD Y
Sbjct: 173 RGSGGFGGRGSQGRGRGTGRNSKQQQLSAEELDAQLDAY 211
>RGD|1594679 [details] [associations]
symbol:Thoc4 "THO complex 4" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000346
"transcription export complex" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1594679
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473948
KO:K12881 GeneTree:ENSGT00410000025615 IPI:IPI00768839
RefSeq:NP_001103072.1 UniGene:Rn.6994 Ensembl:ENSRNOT00000054955
GeneID:690585 KEGG:rno:690585 CTD:690585 NextBio:741240
Uniprot:D3ZXH7
Length = 189
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 45/76 (59%), Positives = 61/76 (80%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74
G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+
Sbjct: 97 GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 156
Query: 75 ADAVAAVKRYNNVQLD 90
ADA+ A+K+YN V LD
Sbjct: 157 ADALKAMKQYNGVPLD 172
>DICTYBASE|DDB_G0285361 [details] [associations]
symbol:DDB_G0285361 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285361 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 KO:K12881
eggNOG:NOG316507 RefSeq:XP_638266.1 ProteinModelPortal:Q54NB4
IntAct:Q54NB4 STRING:Q54NB4 PRIDE:Q54NB4 EnsemblProtists:DDB0233771
GeneID:8625074 KEGG:ddi:DDB_G0285361 InParanoid:Q54NB4 OMA:ISNLHHA
Uniprot:Q54NB4
Length = 327
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 42/82 (51%), Positives = 60/82 (73%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74
G++ + TG++L ISNL + +S D+K LF +G++K+ IHYD SGRS GT V+YSR
Sbjct: 232 GKSLQLFTGSRLNISNLHHAISEADLKVLFDSLGEIKQIKIHYDHSGRSDGTGYVIYSRH 291
Query: 75 ADAVAAVKRYNNVQLDGKPMKI 96
DA+AA+K+YN QLDG+ +KI
Sbjct: 292 NDAMAALKKYNGAQLDGRTLKI 313
>POMBASE|SPBC1D7.04 [details] [associations]
symbol:mlo3 "RNA binding protein Mlo3" species:4896
"Schizosaccharomyces pombe" [GO:0000346 "transcription export
complex" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IGI;IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC1D7.04
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 eggNOG:COG0724
GO:GO:0016973 GO:GO:0000346 EMBL:L42551 PIR:T39861
RefSeq:NP_595715.1 ProteinModelPortal:Q09330 STRING:Q09330
EnsemblFungi:SPBC1D7.04.1 GeneID:2540565 KEGG:spo:SPBC1D7.04
HOGENOM:HOG000177542 KO:K12881 OMA:KGIATII OrthoDB:EOG4QNR5V
NextBio:20801691 Uniprot:Q09330
Length = 199
Score = 161 (61.7 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 40/112 (35%), Positives = 61/112 (54%)
Query: 18 SAIETGTKLYISNLDYGVSNEDIKELF-SEVGDLKRYSIHYDRSGRSKGTAEVVYSRRAD 76
S I +K+ +SNL V+ +KELF +G KR S+ Y +GRSKG A +++SR D
Sbjct: 49 SVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGD 108
Query: 77 AVAAVKRYNNVQLDG-KPMKIEIV-----GTNIATRTAAPAANVNF-GNSNG 121
A A ++Y +DG + MK+EI+ N +PA+N + + NG
Sbjct: 109 ATRAYEQYEGRLVDGTRKMKVEIILDPSRQLNSLAARVSPASNASATASKNG 160
Score = 45 (20.9 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 160 KISAEDLDADLDKYY 174
K SAE+LD ++D Y+
Sbjct: 179 KKSAEELDKEMDDYF 193
>ASPGD|ASPL0000065384 [details] [associations]
symbol:AN7706 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001304 EMBL:AACD01000131 InterPro:IPR025715 Pfam:PF13865
KO:K12881 eggNOG:NOG316507 OrthoDB:EOG4DV8WK RefSeq:XP_680975.1
ProteinModelPortal:Q5AVH4 EnsemblFungi:CADANIAT00000838
GeneID:2869696 KEGG:ani:AN7706.2 HOGENOM:HOG000174259 OMA:LHYDITE
Uniprot:Q5AVH4
Length = 328
Score = 178 (67.7 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
GT+L I NL Y ++ D++ELFS +G + S+ YDR+GRS+G A V YSR DA A+
Sbjct: 85 GTRLRIENLHYDITETDLEELFSRIGPISNVSLVYDRAGRSEGVAYVTYSRYNDAKTAIA 144
Query: 83 RYNNVQLDGKPMKIEIVGT 101
++ G+P++I I +
Sbjct: 145 EFDGANAKGQPIRISITSS 163
Score = 34 (17.0 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 160 KISAEDLDADLDKYYSEASEA 180
K + E+LD +++ Y+ + A
Sbjct: 266 KKTQEELDQEMEDYWGSNAAA 286
>FB|FBgn0032439 [details] [associations]
symbol:Ref2 "RNA and export factor binding protein 2"
species:7227 "Drosophila melanogaster" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:O08583
EMBL:AJ459410 ProteinModelPortal:Q8IFW5 SMR:Q8IFW5 STRING:Q8IFW5
PRIDE:Q8IFW5 FlyBase:FBgn0032439 InParanoid:Q8IFW5
OrthoDB:EOG470S0C Bgee:Q8IFW5 Uniprot:Q8IFW5
Length = 220
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 34/96 (35%), Positives = 60/96 (62%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T + + NLDYGV ++DI ELF++ G +++ +HYDR G S GTA + + R +A +++
Sbjct: 75 TLVMVCNLDYGVDDDDIMELFNQDGVVEKGFVHYDRDGNSLGTAHLSFKYREEAFQIIEQ 134
Query: 84 YNNVQLDGKPMKIEIV-GTNIATRTAAPAANVNFGN 118
++ V+LDG+ +K+ +V T RT ++ G+
Sbjct: 135 FHGVRLDGRRLKLHLVQNTRNFKRTDVDDLSLRMGS 170
>WB|WBGene00000120 [details] [associations]
symbol:aly-1 species:6239 "Caenorhabditis elegans"
[GO:0040011 "locomotion" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
EMBL:Z68213 KO:K12881 HSSP:O08583 HOGENOM:HOG000239962
GeneTree:ENSGT00680000100596 PIR:T18807 RefSeq:NP_501588.1
ProteinModelPortal:Q17561 SMR:Q17561 IntAct:Q17561 STRING:Q17561
PaxDb:Q17561 EnsemblMetazoa:C01F6.5 GeneID:177735
KEGG:cel:CELE_C01F6.5 UCSC:C01F6.5 CTD:177735 WormBase:C01F6.5
eggNOG:NOG289866 InParanoid:Q17561 OMA:DSANIAN NextBio:898152
Uniprot:Q17561
Length = 223
Score = 130 (50.8 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 33/101 (32%), Positives = 59/101 (58%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR-ADAVAAVKR 83
++ +SNL + V + D+++LF+E ++ S++++ G+ GT +V +R AD + +++
Sbjct: 73 RINLSNLAHTVHSGDLRQLFAEF-KIRNVSVNFNEHGKPVGTGDVTLPKRHADRL--IQK 129
Query: 84 YNNVQLDGKPMKIEIVGT-NIATRTAAPAANVNFGNSNGVP 123
+ V LDGK +K I+ + NIA R P A SNG P
Sbjct: 130 FAGVSLDGKEIKFAIIDSANIANRVKFPEAPRR-APSNGRP 169
Score = 48 (22.0 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 160 KISAEDLDADLDKYYSEA 177
K + E+LDA+LD Y S+A
Sbjct: 206 KKTLEELDAELDVYMSKA 223
>UNIPROTKB|G4MKS1 [details] [associations]
symbol:MGG_06668 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001231 KO:K12881 RefSeq:XP_003709373.1
ProteinModelPortal:G4MKS1 EnsemblFungi:MGG_06668T0 GeneID:2684841
KEGG:mgr:MGG_06668 Uniprot:G4MKS1
Length = 258
Score = 138 (53.6 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 36/105 (34%), Positives = 53/105 (50%)
Query: 7 SAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSE-VGDLKRYSIHYDRSGRSKG 65
SA +AS +K+ +SN+ VS IKE F + VG +KR I Y G S+G
Sbjct: 53 SAVQKPAPAKASGAPGTSKVVVSNMPKDVSEAQIKEYFGQSVGPVKRVEISYGPGGVSRG 112
Query: 66 TAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAP 110
A V ++ A A N + +D KP+K+E+V + A + AP
Sbjct: 113 IATVTFAHADGASKAFAELNGLLIDNKPVKVEVVVAS-ADQIPAP 156
Score = 36 (17.7 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 160 KISAEDLDADLDKYY 174
K +AE+LD+++ Y+
Sbjct: 213 KKTAEELDSEMADYF 227
>WB|WBGene00000121 [details] [associations]
symbol:aly-2 species:6239 "Caenorhabditis elegans"
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 InterPro:IPR025715 Pfam:PF13865
EMBL:Z82266 KO:K12881 HSSP:O08583 eggNOG:NOG316507
HOGENOM:HOG000239962 GeneTree:ENSGT00680000100596 PIR:T21298
RefSeq:NP_501594.1 ProteinModelPortal:O62183 SMR:O62183
STRING:O62183 PaxDb:O62183 EnsemblMetazoa:F23B2.6 GeneID:177738
KEGG:cel:CELE_F23B2.6 UCSC:F23B2.6 CTD:177738 WormBase:F23B2.6
InParanoid:O62183 OMA:QVRINIS NextBio:898176 Uniprot:O62183
Length = 227
Score = 117 (46.2 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 30/112 (26%), Positives = 58/112 (51%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVY 71
+ AG +S ++ ISNL V + D++ELF +L + S++++ +G + GT ++
Sbjct: 68 RSAGGSSNDNKQVRINISNLAETVISSDLQELFGAF-NLHKVSVNFNENGGAAGTGDITL 126
Query: 72 SRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVP 123
++ DA ++++ V LDGK M ++ ++ R N S+G P
Sbjct: 127 -KKYDADRLIQKFAGVALDGKVMHFAVIESSNFARKPEIRGTPNRRQSSGKP 177
Score = 47 (21.6 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 162 SAEDLDADLDKYYSEAS 178
+AE LDA+LD Y S ++
Sbjct: 211 TAEQLDAELDAYMSRSA 227
>UNIPROTKB|Q5F4B6 [details] [associations]
symbol:POLDIP3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0035145 "exon-exon junction
complex" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045727
GO:GO:0035145 CTD:84271 eggNOG:NOG268669 HOVERGEN:HBG053550
OMA:QVPQQKA GeneTree:ENSGT00390000018868 OrthoDB:EOG4WSWBG
HOGENOM:HOG000013117 EMBL:AADN02006041 EMBL:AJ851384
IPI:IPI00600024 RefSeq:NP_001012832.1 UniGene:Gga.13560
STRING:Q5F4B6 Ensembl:ENSGALT00000019356 GeneID:417974
KEGG:gga:417974 InParanoid:Q5F4B6 NextBio:20821199 Uniprot:Q5F4B6
Length = 418
Score = 153 (58.9 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 41/97 (42%), Positives = 58/97 (59%)
Query: 10 PVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEV 69
PV+ A S +E GTK+ ++NL V+ EDI ELF G LKR + + G AEV
Sbjct: 267 PVELA--FSPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEV 317
Query: 70 VYSRRADAVAAVKRYNNVQLDGKPMKIEI-VGTNIAT 105
V+ ++ DA+ A K+YNN LDG+PMK + + N+ T
Sbjct: 318 VFVKKEDAITAYKKYNNRCLDGQPMKCNLHMNGNVIT 354
>GENEDB_PFALCIPARUM|PFF0760w [details] [associations]
symbol:PFF0760w "RNA and export factor binding
protein, putative" species:5833 "Plasmodium falciparum" [GO:0003723
"RNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL844505 RefSeq:XP_966143.1
ProteinModelPortal:C6KSZ8 EnsemblProtists:PFF0760w:mRNA
GeneID:3885869 KEGG:pfa:PFF0760w EuPathDB:PlasmoDB:PF3D7_0615700
HOGENOM:HOG000281520 ProtClustDB:CLSZ2444924 Uniprot:C6KSZ8
Length = 156
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRY 84
++ ISNLDY +S D+ ELFS V + I+YD + RS GTA V+ DA A+ +Y
Sbjct: 65 RVKISNLDYTISKNDLMELFSNVCKVVNAWINYDHTDRSNGTAVCVFENINDAQKAIDKY 124
Query: 85 NNVQLDGKPMKIEIV 99
+ +++G +K+EI+
Sbjct: 125 DGSEIEGLSIKMEIL 139
>MGI|MGI:1921076 [details] [associations]
symbol:Poldip3 "polymerase (DNA-directed), delta interacting
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1921076
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0045727 GO:GO:0035145 CTD:84271
eggNOG:NOG268669 HOVERGEN:HBG053550 OMA:QVPQQKA EMBL:AK081139
EMBL:AK083924 EMBL:AK087446 EMBL:AL591952 EMBL:BC037652
EMBL:BC046505 EMBL:BC058225 IPI:IPI00229721 RefSeq:NP_848742.1
UniGene:Mm.23758 ProteinModelPortal:Q8BG81 SMR:Q8BG81 IntAct:Q8BG81
STRING:Q8BG81 PhosphoSite:Q8BG81 PaxDb:Q8BG81 PRIDE:Q8BG81
Ensembl:ENSMUST00000058793 GeneID:73826 KEGG:mmu:73826
GeneTree:ENSGT00390000018868 InParanoid:B2FDB4 OrthoDB:EOG4WSWBG
ChiTaRS:POLDIP3 NextBio:339143 Bgee:Q8BG81 Genevestigator:Q8BG81
GermOnline:ENSMUSG00000041815 Uniprot:Q8BG81
Length = 420
Score = 150 (57.9 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADA 77
S +E GTK+ ++NL V+ EDI ELF G LKR + + G AEVV+ ++ DA
Sbjct: 275 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDA 327
Query: 78 VAAVKRYNNVQLDGKPMKIEI-VGTNIAT 105
+ A K+YNN LDG+PMK + + N+ T
Sbjct: 328 ITAYKKYNNRCLDGQPMKCNLHMNGNVIT 356
>RGD|1311073 [details] [associations]
symbol:Poldip3 "polymerase (DNA-directed), delta interacting
protein 3" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0035145
"exon-exon junction complex" evidence=IEA;ISO] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311073 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0045727 GO:GO:0035145 EMBL:CH473950 CTD:84271
OMA:QVPQQKA GeneTree:ENSGT00390000018868 OrthoDB:EOG4WSWBG
IPI:IPI00777510 RefSeq:NP_001123978.1 UniGene:Rn.3893
Ensembl:ENSRNOT00000055988 GeneID:315170 KEGG:rno:315170
UCSC:RGD:1311073 NextBio:668820 Uniprot:D4A2B0
Length = 420
Score = 150 (57.9 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADA 77
S +E GTK+ ++NL V+ EDI ELF G LKR + + G AEVV+ ++ DA
Sbjct: 275 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDA 327
Query: 78 VAAVKRYNNVQLDGKPMKIEI-VGTNIAT 105
+ A K+YNN LDG+PMK + + N+ T
Sbjct: 328 ITAYKKYNNRCLDGQPMKCNLHMNGNVIT 356
>UNIPROTKB|A7YW33 [details] [associations]
symbol:POLDIP3 "Polymerase (DNA-directed), delta
interacting protein 3" species:9913 "Bos taurus" [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0035145
"exon-exon junction complex" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0045727 GO:GO:0035145 CTD:84271
eggNOG:NOG268669 HOVERGEN:HBG053550 OMA:QVPQQKA
GeneTree:ENSGT00390000018868 OrthoDB:EOG4WSWBG HOGENOM:HOG000013117
EMBL:DAAA02014778 EMBL:BC134441 IPI:IPI00702003
RefSeq:NP_001096653.1 UniGene:Bt.10436 STRING:A7YW33
Ensembl:ENSBTAT00000021952 GeneID:512693 KEGG:bta:512693
InParanoid:A7YW33 NextBio:20870514 Uniprot:A7YW33
Length = 421
Score = 150 (57.9 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADA 77
S +E GTK+ ++NL V+ EDI ELF G LKR + + G AEVV+ ++ DA
Sbjct: 275 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDA 327
Query: 78 VAAVKRYNNVQLDGKPMKIEI-VGTNIAT 105
+ A K+YNN LDG+PMK + + N+ T
Sbjct: 328 ITAYKKYNNRCLDGQPMKCNLHMNGNVIT 356
>UNIPROTKB|F1PS15 [details] [associations]
symbol:POLDIP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
CTD:84271 GeneTree:ENSGT00390000018868 EMBL:AAEX03007273
RefSeq:XP_531709.3 Ensembl:ENSCAFT00000001487 GeneID:474480
KEGG:cfa:474480 Uniprot:F1PS15
Length = 421
Score = 150 (57.9 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADA 77
S +E GTK+ ++NL V+ EDI ELF G LKR + + G AEVV+ ++ DA
Sbjct: 275 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDA 327
Query: 78 VAAVKRYNNVQLDGKPMKIEI-VGTNIAT 105
+ A K+YNN LDG+PMK + + N+ T
Sbjct: 328 ITAYKKYNNRCLDGQPMKCNLHMNGNVIT 356
>UNIPROTKB|Q9BY77 [details] [associations]
symbol:POLDIP3 "Polymerase delta-interacting protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0035145 "exon-exon junction
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 EMBL:Z93241
EMBL:AY422990 EMBL:AB055760 EMBL:AL160111 EMBL:AL160112
EMBL:CR456456 EMBL:AK291623 EMBL:AK291774 EMBL:BC049840
EMBL:BC056912 EMBL:BC095411 EMBL:DQ887818 IPI:IPI00440688
IPI:IPI00440689 RefSeq:NP_115687.2 RefSeq:NP_835237.1
UniGene:Hs.741181 ProteinModelPortal:Q9BY77 SMR:Q9BY77
IntAct:Q9BY77 STRING:Q9BY77 PhosphoSite:Q9BY77 DMDM:50403796
PaxDb:Q9BY77 PRIDE:Q9BY77 DNASU:84271 Ensembl:ENST00000252115
Ensembl:ENST00000348657 GeneID:84271 KEGG:hsa:84271 UCSC:uc003bcu.3
UCSC:uc003bcv.3 CTD:84271 GeneCards:GC22M042979 HGNC:HGNC:23782
HPA:HPA018419 MIM:611520 neXtProt:NX_Q9BY77 PharmGKB:PA134899124
eggNOG:NOG268669 HOVERGEN:HBG053550 InParanoid:Q9BY77 OMA:QVPQQKA
PhylomeDB:Q9BY77 GenomeRNAi:84271 NextBio:73832 PMAP-CutDB:Q9BY77
ArrayExpress:Q9BY77 Bgee:Q9BY77 CleanEx:HS_POLDIP3
Genevestigator:Q9BY77 GermOnline:ENSG00000100227 Uniprot:Q9BY77
Length = 421
Score = 150 (57.9 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADA 77
S +E GTK+ ++NL V+ EDI ELF G LKR + + G AEVV+ ++ DA
Sbjct: 275 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDA 327
Query: 78 VAAVKRYNNVQLDGKPMKIEI-VGTNIAT 105
+ A K+YNN LDG+PMK + + N+ T
Sbjct: 328 ITAYKKYNNRCLDGQPMKCNLHMNGNVIT 356
>UNIPROTKB|E2RT45 [details] [associations]
symbol:POLDIP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:QVPQQKA GeneTree:ENSGT00390000018868 EMBL:AAEX03007273
Ensembl:ENSCAFT00000001488 NextBio:20850486 Uniprot:E2RT45
Length = 439
Score = 150 (57.9 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADA 77
S +E GTK+ ++NL V+ EDI ELF G LKR + + G AEVV+ ++ DA
Sbjct: 293 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDA 345
Query: 78 VAAVKRYNNVQLDGKPMKIEI-VGTNIAT 105
+ A K+YNN LDG+PMK + + N+ T
Sbjct: 346 ITAYKKYNNRCLDGQPMKCNLHMNGNVIT 374
>WB|WBGene00000122 [details] [associations]
symbol:aly-3 species:6239 "Caenorhabditis elegans"
[GO:0040011 "locomotion" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
EMBL:Z68507 KO:K12881 HSSP:O08583 eggNOG:NOG316507
HOGENOM:HOG000239962 GeneTree:ENSGT00680000100596 PIR:T23797
RefSeq:NP_001076697.1 ProteinModelPortal:Q21559 SMR:Q21559
DIP:DIP-25095N IntAct:Q21559 MINT:MINT-1102492 STRING:Q21559
PaxDb:Q21559 PRIDE:Q21559 EnsemblMetazoa:M18.7a.1
EnsemblMetazoa:M18.7a.2 GeneID:178157 KEGG:cel:CELE_M18.7
UCSC:M18.7a.1 CTD:178157 WormBase:M18.7a InParanoid:Q21559
OMA:DFGNRSR NextBio:899954 ArrayExpress:Q21559 Uniprot:Q21559
Length = 240
Score = 123 (48.4 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 37/116 (31%), Positives = 62/116 (53%)
Query: 4 DQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRS 63
D V + G S + ++ ISNL V + D++ELF + L S++++ G S
Sbjct: 57 DAVQNHGISSRGNDSKV---IRVNISNLAPTVISSDLEELFGDYR-LSSVSVNFNEHGDS 112
Query: 64 KGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV-GTNIATRTAAPAANVNFGN 118
GT ++ ++R DA V++++ V LDGK MK ++ +N+A R V+FGN
Sbjct: 113 LGTGDISLTKR-DAERLVQKFSGVALDGKIMKFAVIDSSNMAGR-------VDFGN 160
Score = 34 (17.0 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 159 EKISAEDLDADLDKYYSE 176
+K AE LDA+L+ Y ++
Sbjct: 221 KKTEAE-LDAELEAYMAK 237
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 139 (54.0 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
G S +G ++Y+ NL +GV + ++ LFSE G + + YDR SGRSKG V Y
Sbjct: 195 GGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDS 254
Query: 74 RADAVAAVKRYNNVQLDGKPMKI 96
+ A+K + LDG+ +++
Sbjct: 255 SQEVQNAIKSLDGADLDGRQIRV 277
Score = 132 (51.5 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 23/73 (31%), Positives = 46/73 (63%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKR 83
KL++ NL + V + + +LF G+++ + YD+ +GRS+G V S ++ AA ++
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 84 YNNVQLDGKPMKI 96
+N +LDG+P+++
Sbjct: 152 FNGYELDGRPLRV 164
>UNIPROTKB|H0YN19 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC066612
EMBL:AC090526 HGNC:HGNC:17940 Ensembl:ENST00000558395
Uniprot:H0YN19
Length = 290
Score = 138 (53.6 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLD+ V + +KE+FS G +KR I D+ G+S+G V +
Sbjct: 8 QAGRL-----GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFE 62
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 63 QAIEAVQAISMFNGQFLFDRPMHVKM 88
>TAIR|locus:2075860 [details] [associations]
symbol:U11/U12-31K "U11/U12-31K" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0051302
"regulation of cell division" evidence=IMP] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
Length = 261
Score = 136 (52.9 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGR-SKGTAEVVYSR 73
G + + LY+SNLD+ ++N DI LFS G + R ++ DR R S+G A V+Y
Sbjct: 48 GSGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVS 107
Query: 74 RADAVAAVKRYNNVQLDGKPMKIEIVGTN 102
R DA A + + L+G+ + + I N
Sbjct: 108 REDAAKAARSMDAKILNGRKLTVSIAADN 136
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 25/83 (30%), Positives = 47/83 (56%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKR 83
K+Y+ +L Y V+ ++++ F + G+++ + DR +GRSKG A + Y + A AV +
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 84 YNNVQLDGKPMKIEIVGTNIATR 106
N + L G+ +++ I N R
Sbjct: 79 ANGIDLQGRKIRVNIARENTGDR 101
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 25/83 (30%), Positives = 47/83 (56%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKR 83
K+Y+ +L Y V+ ++++ F + G+++ + DR +GRSKG A + Y + A AV +
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 84 YNNVQLDGKPMKIEIVGTNIATR 106
N + L G+ +++ I N R
Sbjct: 79 ANGIDLQGRKIRVNIARENTGDR 101
>FB|FBgn0030956 [details] [associations]
symbol:CG18259 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000018868 HSSP:O08583 OrthoDB:EOG40CFZS
EMBL:BT100285 RefSeq:NP_573324.1 UniGene:Dm.19742 SMR:Q9VWQ6
IntAct:Q9VWQ6 MINT:MINT-304999 STRING:Q9VWQ6
EnsemblMetazoa:FBtr0074661 GeneID:32866 KEGG:dme:Dmel_CG18259
UCSC:CG18259-RA FlyBase:FBgn0030956 InParanoid:Q9VWQ6
GenomeRNAi:32866 NextBio:780786 Uniprot:Q9VWQ6
Length = 474
Score = 139 (54.0 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 38/108 (35%), Positives = 57/108 (52%)
Query: 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRA 75
R S + G +L +SNL V+ DI+ELFS++G + YD GTAEV+Y
Sbjct: 358 RTSNTKDGYRLLVSNLHTNVTTADIRELFSDIGPV------YDARVVRPGTAEVIYKSLE 411
Query: 76 DAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG-NSNGV 122
A AV Y++ Q D +PM +V + + R+ A++ NS+GV
Sbjct: 412 HAEKAVDTYHHRQFDDQPMHCVLVNPHSSRRSVHKASSRTVTTNSSGV 459
>FB|FBgn0030959 [details] [associations]
symbol:CG6961 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:2001020 "regulation of response to DNA damage
stimulus" evidence=IGI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:NOG268669
GeneTree:ENSGT00390000018868 HSSP:O08583 EMBL:AY061430
RefSeq:NP_573325.1 UniGene:Dm.19168 SMR:Q9VWQ3 STRING:Q9VWQ3
EnsemblMetazoa:FBtr0074660 GeneID:32869 KEGG:dme:Dmel_CG6961
UCSC:CG6961-RA FlyBase:FBgn0030959 InParanoid:Q9VWQ3 OMA:NDIGPMY
OrthoDB:EOG40CFZS GenomeRNAi:32869 NextBio:780796 Uniprot:Q9VWQ3
Length = 474
Score = 139 (54.0 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 38/108 (35%), Positives = 57/108 (52%)
Query: 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRA 75
R S + G +L +SNL V+ DI+ELFS++G + YD GTAEV+Y
Sbjct: 358 RTSNTKDGYRLLVSNLHTNVTTADIRELFSDIGPV------YDARVVRPGTAEVIYKSLE 411
Query: 76 DAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG-NSNGV 122
A AV Y++ Q D +PM +V + + R+ A++ NS+GV
Sbjct: 412 HAEKAVDTYHHRQFDDQPMHCVLVNPHSSRRSVHKASSRTVTTNSSGV 459
>ASPGD|ASPL0000011897 [details] [associations]
symbol:AN3739 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001302
ProteinModelPortal:C8V7B0 EnsemblFungi:CADANIAT00004984
HOGENOM:HOG000217892 OMA:ERAEIQY Uniprot:C8V7B0
Length = 484
Score = 139 (54.0 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAA 80
E +Y+ NL + N+D+ +LFS +G ++R I Y+ +GRS+GT V + A +
Sbjct: 378 EKSNTIYVRNLPWSTCNDDLVDLFSTIGKVERAEIQYEPNGRSRGTGVVQFDNADTAETS 437
Query: 81 VKRYNNVQLDGKPMKIEIV 99
+ ++ Q G+P+ I V
Sbjct: 438 IAKFTGYQYGGRPLGITFV 456
Score = 129 (50.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 26/77 (33%), Positives = 45/77 (58%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEV---GDLKRYSIHYDRSGRSKGTAEVVYSRRADAVA 79
G +LY+SNL + V +D+K+LF + G + R +H D SGR KG+ V + DA
Sbjct: 221 GRQLYVSNLPFNVGWQDLKDLFRQAAQQGTVIRADVHTDASGRPKGSGIVAFESPDDARN 280
Query: 80 AVKRYNNVQLDGKPMKI 96
A++++N G+ +++
Sbjct: 281 AIQQFNGYDWQGRTLEV 297
>UNIPROTKB|F1PIN4 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022252 Uniprot:F1PIN4
Length = 437
Score = 138 (53.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLD+ V + +KE+FS G +KR I D+ G+S+G V +
Sbjct: 67 QAGRL-----GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFE 121
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 122 QAIEAVQAISMFNGQFLFDRPMHVKM 147
>UNIPROTKB|F1LSJ5 [details] [associations]
symbol:Hnrpm "Protein Hnrpm" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 PANTHER:PTHR23003:SF6 IPI:IPI00559961
ProteinModelPortal:F1LSJ5 Ensembl:ENSRNOT00000043570 Uniprot:F1LSJ5
Length = 242
Score = 132 (51.5 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLDY V + +KE+FS G + R I D+ G+S+G V +
Sbjct: 13 QAGRL-----GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFE 67
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 68 QSIEAVQAISMFNGQLLFDRPMHVKM 93
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/107 (28%), Positives = 56/107 (52%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVV 70
+ G + + T L + L + D++E+FS G L ++ YD R+GRS+G A V
Sbjct: 6 RHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVY 65
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
+ R D+ A++R N ++LDG+ ++++ +I R P + G
Sbjct: 66 FERIDDSKEAMERANGMELDGRRIRVDY---SITKRAHTPTPGIYMG 109
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/107 (28%), Positives = 56/107 (52%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVV 70
+ G + + T L + L + D++E+FS G L ++ YD R+GRS+G A V
Sbjct: 6 RHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVY 65
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
+ R D+ A++R N ++LDG+ ++++ +I R P + G
Sbjct: 66 FERIDDSKEAMERANGMELDGRRIRVDY---SITKRAHTPTPGIYMG 109
>UNIPROTKB|F1PIL7 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:AAEX03016110
Ensembl:ENSCAFT00000022263 Uniprot:F1PIL7
Length = 492
Score = 138 (53.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLD+ V + +KE+FS G +KR I D+ G+S+G V +
Sbjct: 176 QAGRL-----GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFE 230
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 231 QAIEAVQAISMFNGQFLFDRPMHVKM 256
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 123 (48.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 27/69 (39%), Positives = 37/69 (53%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N V +E +KELFS+ G + D SG+SKG V Y + DA AV+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 84 YNNVQLDGK 92
N ++ GK
Sbjct: 251 MNGKEISGK 259
Score = 101 (40.6 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G LYI NLD + +E +++ FS G + + + GRSKG V +S +A AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 351
Query: 83 RYNNVQLDGKPMKIEI 98
N + KP+ + +
Sbjct: 352 EMNGRIVGSKPLYVAL 367
Score = 39 (18.8 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 91 GKPMKIEIVGTNIATRTAAPAANV 114
G P + VG A +T AP A V
Sbjct: 476 GLPTTAQRVGVPTAVQTLAPRAAV 499
Score = 36 (17.7 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 91 GKPMKIEIVGTNIATRTAAPAANVNFGNSNGVP 123
G P I G A R AP N S G+P
Sbjct: 448 GMPSAIRQSGPRPALRHLAPTGNAPA--SRGLP 478
>UNIPROTKB|F1SN63 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030182 "neuron differentiation" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:CU326370
EMBL:CU407256 Ensembl:ENSSSCT00000005147 Uniprot:F1SN63
Length = 533
Score = 138 (53.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLD+ V + +KE+FS G +KR I D+ G+S+G V +
Sbjct: 174 QAGRL-----GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFE 228
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 229 QAIEAVQAISMFNGQFLFDRPMHVKM 254
>UNIPROTKB|F1NIP6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AADN02045251 EMBL:AADN02045250
IPI:IPI00596605 Ensembl:ENSGALT00000007847 ArrayExpress:F1NIP6
Uniprot:F1NIP6
Length = 541
Score = 138 (53.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLD+ V + +KE+FS G +KR I D+ G+S+G V +
Sbjct: 177 QAGRL-----GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFE 231
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 232 QAIEAVQAISMFNGQFLFDRPMHVKM 257
>UNIPROTKB|A6QQP0 [details] [associations]
symbol:MYEF2 "MYEF2 protein" species:9913 "Bos taurus"
[GO:0030182 "neuron differentiation" evidence=IEA] [GO:0014902
"myotube differentiation" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902 eggNOG:COG0724
GeneTree:ENSGT00410000025635 HOGENOM:HOG000231932
HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH EMBL:DAAA02029125
EMBL:DAAA02029126 EMBL:BC149929 IPI:IPI00867158
RefSeq:NP_001095555.1 UniGene:Bt.99087 SMR:A6QQP0
Ensembl:ENSBTAT00000055253 GeneID:524920 KEGG:bta:524920
NextBio:20874060 Uniprot:A6QQP0
Length = 543
Score = 138 (53.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLD+ V + +KE+FS G +KR I D+ G+S+G V +
Sbjct: 227 QAGRL-----GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFE 281
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 282 QAIEAVQAISMFNGQFLFDRPMHVKM 307
>UNIPROTKB|D4AB08 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00780020 ProteinModelPortal:D4AB08
Ensembl:ENSRNOT00000007097 ArrayExpress:D4AB08 Uniprot:D4AB08
Length = 567
Score = 138 (53.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLD+ V + +KE+FS G +KR I D+ G+S+G V +
Sbjct: 218 QAGRL-----GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFE 272
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 273 QAIEAVQAISMFNGQFLFDRPMHVKM 298
>UNIPROTKB|B4DMM2 [details] [associations]
symbol:POLDIP3 "Polymerase delta-interacting protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:Z93241 UniGene:Hs.741181 HGNC:HGNC:23782 EMBL:AK297532
IPI:IPI00940039 SMR:B4DMM2 STRING:B4DMM2 Ensembl:ENST00000451060
Uniprot:B4DMM2
Length = 186
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 33/74 (44%), Positives = 45/74 (60%)
Query: 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADA 77
S +E GTK+ ++NL V+ EDI ELF G LKR + + G AEVV+ ++ DA
Sbjct: 119 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDA 171
Query: 78 VAAVKRYNNVQLDG 91
+ A K+YNN LDG
Sbjct: 172 ITAYKKYNNRCLDG 185
>UNIPROTKB|D4A1T2 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00357916 ProteinModelPortal:D4A1T2
Ensembl:ENSRNOT00000056055 ArrayExpress:D4A1T2 Uniprot:D4A1T2
Length = 574
Score = 138 (53.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLD+ V + +KE+FS G +KR I D+ G+S+G V +
Sbjct: 218 QAGRL-----GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFE 272
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 273 QAIEAVQAISMFNGQFLFDRPMHVKM 298
>RGD|1306547 [details] [associations]
symbol:Myef2 "myelin expression factor 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0014902 "myotube differentiation"
evidence=IEA;ISO] [GO:0030182 "neuron differentiation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306547 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN IPI:IPI00209446 RefSeq:NP_001013223.2
UniGene:Rn.1269 ProteinModelPortal:D4AEI5
Ensembl:ENSRNOT00000007103 GeneID:679712 KEGG:rno:679712
UCSC:RGD:1306547 NextBio:717095 ArrayExpress:D4AEI5 Uniprot:D4AEI5
Length = 591
Score = 138 (53.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLD+ V + +KE+FS G +KR I D+ G+S+G V +
Sbjct: 218 QAGRL-----GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFE 272
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 273 QAIEAVQAISMFNGQFLFDRPMHVKM 298
>UNIPROTKB|Q9P2K5 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0014902
"myotube differentiation" evidence=IEP] [GO:0030182 "neuron
differentiation" evidence=IEP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0014902 eggNOG:COG0724 EMBL:AC066612
HOVERGEN:HBG054880 EMBL:AB037762 EMBL:AK002075 EMBL:AK023133
EMBL:AC090526 EMBL:BC014533 EMBL:BC068523 EMBL:BC152420
EMBL:BC152451 EMBL:AF190159 IPI:IPI00292940 IPI:IPI00386418
IPI:IPI00555833 IPI:IPI00555987 RefSeq:NP_057216.2 UniGene:Hs.6638
ProteinModelPortal:Q9P2K5 SMR:Q9P2K5 STRING:Q9P2K5
PhosphoSite:Q9P2K5 DMDM:296439294 PaxDb:Q9P2K5 PRIDE:Q9P2K5
DNASU:50804 Ensembl:ENST00000267836 Ensembl:ENST00000324324
Ensembl:ENST00000561151 Ensembl:ENST00000561351 GeneID:50804
KEGG:hsa:50804 UCSC:uc001zwg.4 UCSC:uc001zwi.4 UCSC:uc001zwj.4
CTD:50804 GeneCards:GC15M048434 HGNC:HGNC:17940 HPA:HPA004883
neXtProt:NX_Q9P2K5 PharmGKB:PA134877084 InParanoid:Q9P2K5
OMA:HEEYRSH OrthoDB:EOG4VDPZN GenomeRNAi:50804 NextBio:53234
ArrayExpress:Q9P2K5 Bgee:Q9P2K5 CleanEx:HS_MYEF2
Genevestigator:Q9P2K5 GermOnline:ENSG00000104177 Uniprot:Q9P2K5
Length = 600
Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLD+ V + +KE+FS G +KR I D+ G+S+G V +
Sbjct: 227 QAGRL-----GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFE 281
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 282 QAIEAVQAISMFNGQFLFDRPMHVKM 307
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 27/87 (31%), Positives = 53/87 (60%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVY 71
++A + +A G+ ++++NLD+ V + +KE+FS G +KR I D+ G+S+G V +
Sbjct: 120 RRALQRTAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTF 179
Query: 72 SRRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 180 EQAIEAVQAISMFNGQFLFDRPMHVKM 206
>UNIPROTKB|Q5ZHY2 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 GeneTree:ENSGT00410000025635
HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN EMBL:AADN02045251 EMBL:AADN02045250 EMBL:AJ721002
IPI:IPI00585337 RefSeq:NP_001012786.1 UniGene:Gga.16840 SMR:Q5ZHY2
Ensembl:ENSGALT00000007846 GeneID:415432 KEGG:gga:415432
InParanoid:Q5ZHY2 NextBio:20819040 Uniprot:Q5ZHY2
Length = 616
Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLD+ V + +KE+FS G +KR I D+ G+S+G V +
Sbjct: 245 QAGRL-----GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFE 299
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 300 QAIEAVQAISMFNGQFLFDRPMHVKM 325
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 124 (48.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N V +E++KELFS+ G + D SG+SKG V Y + DA AV+
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 84 YNNVQLDGK 92
N ++ GK
Sbjct: 251 MNGKEISGK 259
Score = 101 (40.6 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G LYI NLD + +E +++ FS G + + + GRSKG V +S +A AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 351
Query: 83 RYNNVQLDGKPMKIEI 98
N + KP+ + +
Sbjct: 352 EMNGRIVGSKPLYVAL 367
Score = 36 (17.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 91 GKPMKIEIVGTNIATRTAAPAA 112
G P ++ + A TAAP A
Sbjct: 485 GVPTAVQNLAPRAAVATAAPRA 506
Score = 36 (17.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 91 GKPMKIEIVGTNIATRTAAPAANVNFGNSNGVP 123
G P I G A R AP N S G+P
Sbjct: 448 GMPSAIRQSGPRPALRHLAPTGNAPA--SRGLP 478
Score = 34 (17.0 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 91 GKPMKIEIVGTNIATRTAAPAANV 114
G P + VG A + AP A V
Sbjct: 476 GLPTTAQRVGVPTAVQNLAPRAAV 499
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 123 (48.4 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 27/69 (39%), Positives = 37/69 (53%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N V +E +KELFS+ G + D SG+SKG V Y + DA AV+
Sbjct: 231 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 290
Query: 84 YNNVQLDGK 92
N ++ GK
Sbjct: 291 MNGKEISGK 299
Score = 36 (17.7 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 91 GKPMKIEIVGTNIATRTAAPAANVNFGNSNGVP 123
G P I G A R AP N S G+P
Sbjct: 488 GMPSAIRQSGPRPALRHLAPTGNAPA--SRGLP 518
Score = 35 (17.4 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 88 QLDGKPMKIEIVGTNIATRTAAPAA 112
Q G P ++ + A AAP A
Sbjct: 551 QSGGVPTAVQTLAPRAAVAAAAPRA 575
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 129 (50.5 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 31/107 (28%), Positives = 56/107 (52%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVV 70
+ G + + T L + L + D++E+FS G L ++ YD R+GRS+G A V
Sbjct: 107 RHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVY 166
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
+ R D+ A++R N ++LDG+ ++++ +I R P + G
Sbjct: 167 FERIDDSKEAMERANGMELDGRRIRVDY---SITKRAHTPTPGIYMG 210
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 129 (50.5 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 31/107 (28%), Positives = 56/107 (52%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVV 70
+ G + + T L + L + D++E+FS G L ++ YD R+GRS+G A V
Sbjct: 107 RHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVY 166
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
+ R D+ A++R N ++LDG+ ++++ +I R P + G
Sbjct: 167 FERIDDSKEAMERANGMELDGRRIRVDY---SITKRAHTPTPGIYMG 210
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 129 (50.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 31/107 (28%), Positives = 56/107 (52%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVV 70
+ G + + T L + L + D++E+FS G L ++ YD R+GRS+G A V
Sbjct: 107 RHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVY 166
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
+ R D+ A++R N ++LDG+ ++++ +I R P + G
Sbjct: 167 FERIDDSKEAMERANGMELDGRRIRVDY---SITKRAHTPTPGIYMG 210
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 129 (50.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 31/107 (28%), Positives = 56/107 (52%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVV 70
+ G + + T L + L + D++E+FS G L ++ YD R+GRS+G A V
Sbjct: 105 RHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVY 164
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
+ R D+ A++R N ++LDG+ ++++ +I R P + G
Sbjct: 165 FERIDDSKEAMERANGMELDGRRIRVDY---SITKRAHTPTPGIYMG 208
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 129 (50.5 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 31/107 (28%), Positives = 56/107 (52%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVV 70
+ G + + T L + L + D++E+FS G L ++ YD R+GRS+G A V
Sbjct: 107 RHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVY 166
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
+ R D+ A++R N ++LDG+ ++++ +I R P + G
Sbjct: 167 FERIDDSKEAMERANGMELDGRRIRVDY---SITKRAHTPTPGIYMG 210
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 129 (50.5 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 31/107 (28%), Positives = 56/107 (52%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVV 70
+ G + + T L + L + D++E+FS G L ++ YD R+GRS+G A V
Sbjct: 105 RHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVY 164
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
+ R D+ A++R N ++LDG+ ++++ +I R P + G
Sbjct: 165 FERIDDSKEAMERANGMELDGRRIRVDY---SITKRAHTPTPGIYMG 208
>UNIPROTKB|F1MYI2 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GeneTree:ENSGT00410000025635 PANTHER:PTHR23003:SF6
EMBL:DAAA02019521 EMBL:DAAA02019520 IPI:IPI00903735
Ensembl:ENSBTAT00000028022 ArrayExpress:F1MYI2 Uniprot:F1MYI2
Length = 549
Score = 134 (52.2 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 29/88 (32%), Positives = 52/88 (59%)
Query: 11 VQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVV 70
+Q+AGR G+ ++++NLDY V + +KE+FS G + R I D+ G+S+G V
Sbjct: 33 MQKAGRL-----GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVT 87
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEI 98
+ + +AV A+ +N L +PM +++
Sbjct: 88 FEQSIEAVQAISMFNGQLLFDRPMHVKM 115
>UNIPROTKB|F1NS10 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:AADN02063494
EMBL:AADN02063495 EMBL:AADN02063496 IPI:IPI00599569
Ensembl:ENSGALT00000000512 ArrayExpress:F1NS10 Uniprot:F1NS10
Length = 559
Score = 133 (51.9 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLDY V + +KE+FS G + R I D+ G+S+G V +
Sbjct: 187 QAGRL-----GSTVFVANLDYKVGWKKLKEVFSMAGAVVRADILEDKDGKSRGIGTVTFE 241
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 242 QAIEAVQAISMFNGQLLFDRPMHVKM 267
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/107 (28%), Positives = 55/107 (51%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVV 70
+ G + + T L + L + D++E+FS G L ++ YD R+GRS+G A V
Sbjct: 6 RHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVY 65
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
+ R D+ A++ N ++LDG+ ++++ +I R P + G
Sbjct: 66 FERIDDSKEAMEHANGMELDGRRIRVDY---SITKRAHTPTPGIYMG 109
>RGD|620369 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS] [GO:0003823 "antigen binding" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA;ISO] [GO:0016363 "nuclear
matrix" evidence=IEA;ISO] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:620369 GO:GO:0003823 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0016363
GO:GO:0000398 eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 134 (52.2 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 29/88 (32%), Positives = 52/88 (59%)
Query: 11 VQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVV 70
+Q+AGR G+ ++++NLDY V + +KE+FS G + R I D+ G+S+G V
Sbjct: 156 MQKAGRL-----GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVT 210
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEI 98
+ + +AV A+ +N L +PM +++
Sbjct: 211 FEQSIEAVQAISMFNGQLLFDRPMHVKM 238
>UNIPROTKB|F1LV13 [details] [associations]
symbol:Hnrpm "Protein Hnrpm" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
IPI:IPI01016435 RefSeq:NP_446328.2 UniGene:Rn.10156 GeneID:116655
KEGG:rno:116655 NextBio:619427 PRIDE:F1LV13
Ensembl:ENSRNOT00000011047 Uniprot:F1LV13
Length = 690
Score = 134 (52.2 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 29/88 (32%), Positives = 52/88 (59%)
Query: 11 VQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVV 70
+Q+AGR G+ ++++NLDY V + +KE+FS G + R I D+ G+S+G V
Sbjct: 156 MQKAGRL-----GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVT 210
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEI 98
+ + +AV A+ +N L +PM +++
Sbjct: 211 FEQSIEAVQAISMFNGQLLFDRPMHVKM 238
>UNIPROTKB|Q62826 [details] [associations]
symbol:Hnrnpm "Heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620369 GO:GO:0003823 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0016363 GO:GO:0000398
eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 134 (52.2 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 29/88 (32%), Positives = 52/88 (59%)
Query: 11 VQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVV 70
+Q+AGR G+ ++++NLDY V + +KE+FS G + R I D+ G+S+G V
Sbjct: 156 MQKAGRL-----GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVT 210
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEI 98
+ + +AV A+ +N L +PM +++
Sbjct: 211 FEQSIEAVQAISMFNGQLLFDRPMHVKM 238
>UNIPROTKB|F1SA50 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 OMA:PGIERMA InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:FP090904
Ensembl:ENSSSCT00000014856 Uniprot:F1SA50
Length = 704
Score = 134 (52.2 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 29/88 (32%), Positives = 52/88 (59%)
Query: 11 VQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVV 70
+Q+AGR G+ ++++NLDY V + +KE+FS G + R I D+ G+S+G V
Sbjct: 170 MQKAGRL-----GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVT 224
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEI 98
+ + +AV A+ +N L +PM +++
Sbjct: 225 FEQSIEAVQAISMFNGQLLFDRPMHVKM 252
>UNIPROTKB|F1SJQ4 [details] [associations]
symbol:POLDIP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045727
GO:GO:0035145 OMA:QVPQQKA GeneTree:ENSGT00390000018868
EMBL:CU928642 Ensembl:ENSSSCT00000000041 Uniprot:F1SJQ4
Length = 338
Score = 129 (50.5 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 33/75 (44%), Positives = 46/75 (61%)
Query: 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADA 77
S +E GTK+ ++NL V+ EDI ELF G LKR + + G AEVV+ ++ DA
Sbjct: 254 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDA 306
Query: 78 VAAVKRYNNVQLDGK 92
+ A K+YNN LDG+
Sbjct: 307 ITAYKKYNNRCLDGE 321
>UNIPROTKB|E2RMR3 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 OMA:PGIERMA
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:AAEX03012475 Ensembl:ENSCAFT00000029410 Uniprot:E2RMR3
Length = 743
Score = 134 (52.2 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 29/88 (32%), Positives = 52/88 (59%)
Query: 11 VQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVV 70
+Q+AGR G+ ++++NLDY V + +KE+FS G + R I D+ G+S+G V
Sbjct: 209 MQKAGRL-----GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVT 263
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEI 98
+ + +AV A+ +N L +PM +++
Sbjct: 264 FEQSIEAVQAISMFNGQLLFDRPMHVKM 291
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRA 75
+S+ +KL+I L + V + +K+ FS G++ I YD+ SGRS+G V ++
Sbjct: 34 SSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEG 93
Query: 76 DAVAAVKRYNNVQLDGKPMKI 96
DA++A + L G+P++I
Sbjct: 94 DALSAKDAMDGKGLLGRPLRI 114
>UNIPROTKB|Q5ZL80 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000380 "alternative
mRNA splicing, via spliceosome" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380
GO:GO:0042382 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887 OMA:PGIERMA
OrthoDB:EOG4RBQJN InterPro:IPR024666 PANTHER:PTHR23003:SF6
Pfam:PF11532 EMBL:AADN02063494 EMBL:AADN02063495 EMBL:AADN02063496
EMBL:AJ719854 IPI:IPI00594541 RefSeq:NP_001026103.1
UniGene:Gga.13144 SMR:Q5ZL80 STRING:Q5ZL80
Ensembl:ENSGALT00000000510 GeneID:420054 KEGG:gga:420054
InParanoid:Q5ZL80 NextBio:20823019 Uniprot:Q5ZL80
Length = 709
Score = 133 (51.9 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLDY V + +KE+FS G + R I D+ G+S+G V +
Sbjct: 204 QAGRL-----GSTVFVANLDYKVGWKKLKEVFSMAGAVVRADILEDKDGKSRGIGTVTFE 258
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 259 QAIEAVQAISMFNGQLLFDRPMHVKM 284
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 136 (52.9 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 30/100 (30%), Positives = 55/100 (55%)
Query: 10 PVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEV 69
P ++ R I G ++++SN+++ S +D+KELFS G ++ + G SKG V
Sbjct: 982 PSRKQDRNGPIYEGREIHVSNVNWSASEDDLKELFSRFGTVELVRLPRKVDGGSKGFGYV 1041
Query: 70 VYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAA 109
V+S + +A AA+ + + G+P+ +++ A R AA
Sbjct: 1042 VFSSKEEATAALAMHEQ-EFRGRPLHVKVSAPQGAKRIAA 1080
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 33/107 (30%), Positives = 56/107 (52%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVV 70
Q RA+ + T L + L + D++E+FS G L ++ YD R+GRS+G A V
Sbjct: 124 QGDARANP-DPNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVY 182
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
+ DA A++R N ++LDG+ ++++ +I R P + G
Sbjct: 183 FEHIDDAKEAMERANGMELDGRRIRVDY---SITKRPHTPTPGIYMG 226
>UNIPROTKB|F1MY44 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887 OMA:PGIERMA
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:DAAA02019521 EMBL:DAAA02019520 IPI:IPI00826962
RefSeq:NP_001178152.1 UniGene:Bt.48882 PRIDE:F1MY44
Ensembl:ENSBTAT00000011559 GeneID:515290 KEGG:bta:515290
NextBio:20871749 ArrayExpress:F1MY44 Uniprot:F1MY44
Length = 730
Score = 132 (51.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLDY V + +KE+FS G + R I D+ G+S+G V +
Sbjct: 198 QAGRL-----GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFE 252
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 253 QSIEAVQAISMFNGQLLFDRPMHVKM 278
>UNIPROTKB|P52272 [details] [associations]
symbol:HNRNPM "Heterogeneous nuclear ribonucleoprotein M"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0005887 "integral to plasma membrane"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0042382 "paraspeckles" evidence=IDA] [GO:0000380 "alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005887 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724
GO:GO:0000380 GO:GO:0042382 EMBL:L03532 EMBL:L32611 EMBL:AF061832
EMBL:BC000138 EMBL:BC008895 EMBL:BC019580 IPI:IPI00171903
IPI:IPI00383296 PIR:S35532 RefSeq:NP_005959.2 RefSeq:NP_112480.2
UniGene:Hs.465808 UniGene:Hs.666214 PDB:2DGV PDB:2DH9 PDB:2DO0
PDB:2OT8 PDBsum:2DGV PDBsum:2DH9 PDBsum:2DO0 PDBsum:2OT8
ProteinModelPortal:P52272 SMR:P52272 DIP:DIP-29336N IntAct:P52272
MINT:MINT-4999200 STRING:P52272 PhosphoSite:P52272 DMDM:55977747
REPRODUCTION-2DPAGE:IPI00383296 UCD-2DPAGE:P52272 PaxDb:P52272
PRIDE:P52272 Ensembl:ENST00000325495 Ensembl:ENST00000348943
GeneID:4670 KEGG:hsa:4670 UCSC:uc010dwd.3 UCSC:uc010dwe.3 CTD:4670
GeneCards:GC19P008509 H-InvDB:HIX0137462 HGNC:HGNC:5046
HPA:CAB016113 HPA:HPA024344 MIM:160994 neXtProt:NX_P52272
PharmGKB:PA29370 HOGENOM:HOG000231932 HOVERGEN:HBG054880
InParanoid:P52272 KO:K12887 OMA:PGIERMA OrthoDB:EOG4RBQJN
PhylomeDB:P52272 ChiTaRS:HNRNPM EvolutionaryTrace:P52272
GenomeRNAi:4670 NextBio:17994 ArrayExpress:P52272 Bgee:P52272
CleanEx:HS_HNRNPM Genevestigator:P52272 GermOnline:ENSG00000099783
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
Uniprot:P52272
Length = 730
Score = 132 (51.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLDY V + +KE+FS G + R I D+ G+S+G V +
Sbjct: 198 QAGRL-----GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFE 252
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 253 QSIEAVQAISMFNGQLLFDRPMHVKM 278
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 129 (50.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 21/71 (29%), Positives = 45/71 (63%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
+Y+ NL + S+ ++ +LF+++G + R I Y+ +GRSKG V + DA +++++ N
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 371
Query: 86 NVQLDGKPMKI 96
+ G+P+++
Sbjct: 372 GYRYGGRPLQL 382
Score = 125 (49.1 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAA 80
E +L++ NL Y V +D+K+LF + G + R I ++ GRS+G VV S +A+ A
Sbjct: 176 EPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHA 235
Query: 81 VKRYNNVQLDGKPMKIEI 98
++ +N G+ +++ +
Sbjct: 236 IQMLHNTDFMGRTLEVRL 253
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 131 (51.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G LY+ NLD V++E ++ELF+E G + + D SG SKG+ V +S ++A +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLN 386
Query: 83 RYNNVQLDGKPMKIEI 98
N + GKP+ + +
Sbjct: 387 EMNGKMVGGKPLYVAL 402
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N V +E +KELFS+ G + D +G+SKG V Y + DA AV+
Sbjct: 104 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 163
Query: 84 YNNVQLDGK 92
N ++ GK
Sbjct: 164 MNGKEISGK 172
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRS-GRSKGTAEVVYSRRADAVAAV 81
G+KLY+ NL+Y V + D++ F+ G +K + DR+ GRS+G V +A AA+
Sbjct: 2 GSKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAI 61
Query: 82 KRYNNVQLDGKPMKI 96
N ++DG+ + +
Sbjct: 62 AGLNGKEMDGRNLMV 76
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 29/100 (29%), Positives = 57/100 (57%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVK 82
+KL++ L +G + +K+ F+ G++ ++ DR +GRS+G V +S A A+K
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 83 RYNNVQLDGKPMKIEIVGTNIAT-RTAAPAANVNFGNSNG 121
+ +L+G+ +++ N+AT R++AP ++ FG G
Sbjct: 95 EMDGKELNGRQIRV-----NLATERSSAPRSS--FGGGGG 127
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAV 81
G +Y+ N+ Y + E+I F+ VG + I YDR +GR +G A V +S A A AV
Sbjct: 5 GFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAV 64
Query: 82 KRYNNVQLDGKPMKI 96
++ N V +G+ +++
Sbjct: 65 EQLNGVAFNGRNLRV 79
>MGI|MGI:1926465 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003823
"antigen binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1926465 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724
GO:GO:0000380 GO:GO:0042382 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887 OMA:PGIERMA
ChiTaRS:HNRNPM InterPro:IPR024666 PANTHER:PTHR23003:SF6
Pfam:PF11532 EMBL:AK011521 EMBL:BC005758 EMBL:BC065172
IPI:IPI00132443 IPI:IPI00480357 RefSeq:NP_001103383.1
RefSeq:NP_084080.1 UniGene:Mm.311439 ProteinModelPortal:Q9D0E1
SMR:Q9D0E1 IntAct:Q9D0E1 STRING:Q9D0E1 PhosphoSite:Q9D0E1
PaxDb:Q9D0E1 PRIDE:Q9D0E1 Ensembl:ENSMUST00000087582
Ensembl:ENSMUST00000148178 GeneID:76936 KEGG:mmu:76936
InParanoid:Q9D0E1 NextBio:346119 Bgee:Q9D0E1 Genevestigator:Q9D0E1
Uniprot:Q9D0E1
Length = 729
Score = 130 (50.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 29/86 (33%), Positives = 50/86 (58%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLDY V + +KE+FS G + R I D+ G+S+G V +
Sbjct: 197 QAGRL-----GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFE 251
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 252 QSIEAVQAISMFNGQLLFDRPMHVKM 277
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 124 (48.7 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 28/100 (28%), Positives = 52/100 (52%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
+++ N+ YG+S E I ++FS G + + + YDR +G+ KG Y A +AV+
Sbjct: 10 VFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAVRNL 69
Query: 85 NNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG-NSNGVP 123
N+ ++ G+ ++++ +N T P G N +G P
Sbjct: 70 NDTEIMGRKLRVDF--SNEKPSTNDPDDGPPGGANGSGAP 107
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 123 (48.4 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 30/107 (28%), Positives = 55/107 (51%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVV 70
+ G + + T L + L + D++E+FS G L ++ YD R+GRS+G A V
Sbjct: 109 RHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVY 168
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
+ R D+ A++ N ++LDG+ ++++ +I R P + G
Sbjct: 169 FERIDDSKEAMEHANGMELDGRRIRVDY---SITKRAHTPTPGIYMG 212
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 125 (49.1 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 20/77 (25%), Positives = 47/77 (61%)
Query: 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVA 79
I+ G +++I NL Y ++ + +K++F E G + R + D +G S+G V+Y + +
Sbjct: 215 IDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIR 274
Query: 80 AVKRYNNVQLDGKPMKI 96
A+ +N ++++G+ +++
Sbjct: 275 AIDTFNGMEVEGRVLEV 291
>ASPGD|ASPL0000076347 [details] [associations]
symbol:AN4505 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 EMBL:BN001303
EMBL:AACD01000078 HOGENOM:HOG000183826 KO:K12876 eggNOG:NOG246776
OrthoDB:EOG4M9523 RefSeq:XP_662109.1 ProteinModelPortal:Q5B4M5
SMR:Q5B4M5 STRING:Q5B4M5 EnsemblFungi:CADANIAT00005939
GeneID:2872307 KEGG:ani:AN4505.2 OMA:IEGWIII Uniprot:Q5B4M5
Length = 158
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADA 77
+IE G + +N+ S ED+ +LF+E G++K +S++ DR +G KG A + YS +A
Sbjct: 38 SIE-GWIIIATNIHEEASEEDVTDLFAEYGEIKNFSLNLDRRTGYVKGYALIEYSTLPEA 96
Query: 78 VAAVKRYNNVQLDGKPMKIE 97
A+K N +L + ++++
Sbjct: 97 AEAIKELNGTKLLDQTIEVD 116
>UNIPROTKB|B5G279 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
Length = 168
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRADA 77
+++ + LY+ NL + + E I+ELFS+ GD+KR + D+ ++ G V Y RADA
Sbjct: 38 SLKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADA 97
Query: 78 VAAVKRYNNVQLDGKPMKIE 97
A++ N +LD + ++ +
Sbjct: 98 EHAMRFINGTRLDDRIIRTD 117
>UNIPROTKB|P52299 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8355 "Xenopus laevis" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0000340 "RNA 7-methylguanosine cap binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005845
"mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=IDA] [GO:0006446 "regulation of
translational initiation" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 HOVERGEN:HBG052581
PANTHER:PTHR18847 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:BC072902 EMBL:X84788 PIR:I51602 RefSeq:NP_001167476.1
UniGene:Xl.43439 UniGene:Xl.81730 ProteinModelPortal:P52299
SMR:P52299 GeneID:100380998 KEGG:xla:100380998
Xenbase:XB-GENE-1005792 Uniprot:P52299
Length = 153
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 9 FPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTA 67
F ++ + S ++ LY+ NL + + E I ELFS+ GD+KR + D+ ++ G
Sbjct: 22 FRGNRSDQESLLKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFC 81
Query: 68 EVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97
V Y RADA A++ N +LD + ++ +
Sbjct: 82 FVEYYTRADAEQAMRFINGTRLDDRIVRTD 111
>UNIPROTKB|Q2KGN9 [details] [associations]
symbol:MGCH7_ch7g296 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0043581 EMBL:CM000230
ProteinModelPortal:Q2KGN9 Uniprot:Q2KGN9
Length = 375
Score = 123 (48.4 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 25/89 (28%), Positives = 50/89 (56%)
Query: 12 QQAGRASAIETGTKLY-ISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVV 70
Q G A I +G +L I L V+ + ++++F + G+++ + +R G ++GTA ++
Sbjct: 130 QYQGEARLICSGFRLIVIERLTKNVTEDHLRDIFGQYGEIRDLDLPINRQGTNRGTAYIL 189
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEIV 99
Y + DA +A+ + Q+DG + + IV
Sbjct: 190 YVQEPDAESAIAHMHEGQIDGATVNVSIV 218
>UNIPROTKB|Q5ZKR5 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
Length = 168
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRADAV 78
++ + LY+ NL + + E I+ELFS+ GD+KR + D+ ++ G V Y RADA
Sbjct: 39 LKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAE 98
Query: 79 AAVKRYNNVQLDGKPMKIE 97
A++ N +LD + ++ +
Sbjct: 99 HAMRFINGTRLDDRIVRTD 117
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 126 (49.4 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G LY+ NLD V +E +KE+FSE G++ + + G S+G V YS +A+ A+
Sbjct: 331 GANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALS 390
Query: 83 RYNNVQLDGKPMKIEI 98
N + KP+ I +
Sbjct: 391 EMNGKMIGRKPLYIAL 406
>ZFIN|ZDB-GENE-051120-114 [details] [associations]
symbol:myef2 "myelin expression factor 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-051120-114 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804
OrthoDB:EOG4VDPZN EMBL:BC108001 IPI:IPI00656464
RefSeq:NP_001032500.1 UniGene:Dr.77011 ProteinModelPortal:Q32PS6
SMR:Q32PS6 PRIDE:Q32PS6 GeneID:641483 KEGG:dre:641483
NextBio:20901587 ArrayExpress:Q32PS6 Bgee:Q32PS6 Uniprot:Q32PS6
Length = 557
Score = 124 (48.7 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 25/86 (29%), Positives = 48/86 (55%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G ++++NLD+ V + +KE+F G ++R + D+ G+S+G V +
Sbjct: 206 QAGRL-----GATIFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFE 260
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L + M +++
Sbjct: 261 QPLEAVQAISMFNGQMLFDRQMHVKM 286
>WB|WBGene00009141 [details] [associations]
symbol:ncbp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0040022 "feminization of
hermaphroditic germ-line" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0005635 "nuclear envelope" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0005635
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0016246
GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 GO:GO:0040020
GO:GO:0040022 eggNOG:COG0724 GO:GO:0006370 HOGENOM:HOG000217589
PANTHER:PTHR18847 HSSP:P52298 GeneTree:ENSGT00390000003197
EMBL:Z78419 PIR:T21382 RefSeq:NP_001250552.1 RefSeq:NP_001250553.1
RefSeq:NP_001250554.1 ProteinModelPortal:Q93594 STRING:Q93594
PaxDb:Q93594 GeneID:184953 KEGG:cel:CELE_F26A3.2 UCSC:F26A3.2
CTD:184953 WormBase:F26A3.2a WormBase:F26A3.2b WormBase:F26A3.2c
InParanoid:Q93594 OMA:YRTDYDV NextBio:926534 Uniprot:Q93594
Length = 158
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRAD 76
+A+ T LY+ NL Y + + ELF GD++R + DR ++ G V Y R D
Sbjct: 31 TALRTSCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTRED 90
Query: 77 AVAAVKRYNNVQLDGKPMKIE 97
A A++ +N ++D + ++ +
Sbjct: 91 AELALQNISNTRMDDRVIRAD 111
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAA 80
+G +Y+ N + + +D+ FS+ G++ I DR +GR +G A V ++ A A A
Sbjct: 2 SGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRA 61
Query: 81 VKRYNNVQLDGKPMKIEI 98
V ++N V +G+ +++ +
Sbjct: 62 VDQFNGVDFNGRALRVNL 79
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAA 80
+G +Y+ N + + +D+ FS+ G++ I DR +GR +G A V ++ A A A
Sbjct: 2 SGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRA 61
Query: 81 VKRYNNVQLDGKPMKIEI 98
V ++N V +G+ +++ +
Sbjct: 62 VDQFNGVDFNGRALRVNL 79
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 121 (47.7 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 4 DQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRS 63
D + F +++ R G LY+ NLD V N ++ELFSE G + + +G S
Sbjct: 203 DLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGIS 262
Query: 64 KGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98
KG V +S +A A+ + N + KP+ + +
Sbjct: 263 KGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSL 297
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 117 (46.2 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 24/79 (30%), Positives = 47/79 (59%)
Query: 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVA 79
ET KL++ NL + V++E + F E GD+ + +D +GRS+G V YS +A+
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 80 AVKRYNNVQLDGKPMKIEI 98
A++ + +L+G+ +++ +
Sbjct: 234 ALESLDGFELEGRAIRVNL 252
>UNIPROTKB|J9NZ20 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AAEX03015129
RefSeq:XP_534835.1 ProteinModelPortal:J9NZ20
Ensembl:ENSCAFT00000049381 GeneID:477640 KEGG:cfa:477640
Uniprot:J9NZ20
Length = 217
Score = 115 (45.5 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGR-SKGTAEVVYSRRADAVAAVKRY 84
+Y+SNL + ++N D+ +FS+ G + + +I D+ R SKG A +++ + A+ +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71
Query: 85 NNVQLDGKPMKIEIVGTN 102
NN QL G+ +K I N
Sbjct: 72 NNKQLFGRVIKASIAIDN 89
>MGI|MGI:1914447 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
Length = 217
Score = 115 (45.5 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGR-SKGTAEVVYSRRADAVAAVKRY 84
+Y+SNL + ++N D+ +FS+ G + + +I D+ R SKG A +++ + A+ +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71
Query: 85 NNVQLDGKPMKIEIVGTN 102
NN QL G+ +K I N
Sbjct: 72 NNKQLFGRVIKASIAIDN 89
>POMBASE|SPBC887.05c [details] [associations]
symbol:cwf29 "RNA-binding protein Cwf29" species:4896
"Schizosaccharomyces pombe" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC887.05c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0000245 GO:GO:0005686 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 HSSP:Q14103 PIR:T40730
RefSeq:NP_596479.1 ProteinModelPortal:O94290 IntAct:O94290
STRING:O94290 EnsemblFungi:SPBC887.05c.1 GeneID:2541212
KEGG:spo:SPBC887.05c OrthoDB:EOG441TN4 NextBio:20802324
Uniprot:O94290
Length = 217
Score = 115 (45.5 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 30/96 (31%), Positives = 53/96 (55%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
+YI NLD+ ++ +DI +FSE G+ ++ D+ +G+SKG A + Y + V AV
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 85 NNVQLDGKPMKIEIVGT-NIATRTAAPAANVNFGNS 119
NV+L + ++++ V + + + PA V G S
Sbjct: 93 TNVKLLDRLVRVDHVASYKVPQKEKEPANLVPLGES 128
>RGD|1309851 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
Length = 217
Score = 115 (45.5 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGR-SKGTAEVVYSRRADAVAAVKRY 84
+Y+SNL + ++N D+ +FS+ G + + +I D+ R SKG A +++ + A+ +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71
Query: 85 NNVQLDGKPMKIEIVGTN 102
NN QL G+ +K I N
Sbjct: 72 NNKQLFGRVIKASIAIDN 89
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 121 (47.7 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 25/77 (32%), Positives = 47/77 (61%)
Query: 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVA 79
E+ T L I+ L G++ E+++ LF+ +G+++ + D+ +G+S G V Y R DA+
Sbjct: 39 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALR 98
Query: 80 AVKRYNNVQLDGKPMKI 96
AV +N ++L K +K+
Sbjct: 99 AVSSFNGLRLQNKTIKV 115
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 123 (48.4 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 27/69 (39%), Positives = 38/69 (55%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N V +E++KELFS+ G + D SG+SKG V Y + DA AV+
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 84 YNNVQLDGK 92
N ++ GK
Sbjct: 251 MNGKEITGK 259
>UNIPROTKB|C1BY64 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8010 "Esox lucius" [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
GO:GO:0006408 EMBL:BT079543 ProteinModelPortal:C1BY64
Uniprot:C1BY64
Length = 155
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRADAV 78
++ LY+ NL + + E + ELFS+ GD+KR I D+ ++ G V Y RADA
Sbjct: 35 LKQSNTLYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRADAE 94
Query: 79 AAVKRYNNVQLDGKPMKIE 97
A++ N +LD + ++ +
Sbjct: 95 NAMRFVNGTRLDDRIIRTD 113
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAV 81
G +Y+ N+DY + E ++E F VG ++R +I +DR SG KG A + + + A+
Sbjct: 27 GRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQTESVQKAI 86
Query: 82 KRYNNVQLDGKPMKIEIVGTNI 103
+ + G+ +++ TN+
Sbjct: 87 DELHGKEFRGRELRVTAKRTNL 108
>ZFIN|ZDB-GENE-020419-31 [details] [associations]
symbol:ncbp2 "nuclear cap binding protein subunit 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA;ISS]
[GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0046833 "positive regulation of RNA export from nucleus"
evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=ISS] [GO:0006408 "snRNA export from nucleus" evidence=ISS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-020419-31
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:AY099530 EMBL:AL953867
EMBL:BC083529 IPI:IPI00487113 RefSeq:NP_775356.1 UniGene:Dr.83993
ProteinModelPortal:Q8JGR6 SMR:Q8JGR6 STRING:Q8JGR6
Ensembl:ENSDART00000008365 GeneID:192325 KEGG:dre:192325
InParanoid:Q8JGR6 NextBio:20797161 Bgee:Q8JGR6 Uniprot:Q8JGR6
Length = 155
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRADAV 78
++ LY+ NL + + E + ELF++ GD+KR I D+ ++ G V Y RADA
Sbjct: 35 LKQSATLYVGNLSFYTTEEQVHELFAKCGDVKRIIIGLDKIKKTACGFCFVEYYTRADAE 94
Query: 79 AAVKRYNNVQLDGKPMKIE 97
A++ N +LD + ++ +
Sbjct: 95 NAMRFVNGTRLDDRIIRTD 113
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 121 (47.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T LY+ N++ ++E +ELF++ G + S+ D G+ KG V Y + DAV AV+
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 84 YNNVQLDGKPMKI 96
N+ +L+G+ + +
Sbjct: 279 LNDSELNGEKLYV 291
Score = 107 (42.7 bits), Expect = 0.00017, P = 0.00017
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G L++ NLD V +E ++E F+ G + + +G+SKG V +S +A A+
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAIT 380
Query: 83 RYNNVQLDGKPMKIEI 98
N + GKP+ + I
Sbjct: 381 EKNQQIVAGKPLYVAI 396
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 115 (45.5 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N + +E +K+LF + G + D SG+SKG V + R DA AV
Sbjct: 24 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 83
Query: 84 YNNVQLDGKPMKI 96
N +L+GK + +
Sbjct: 84 MNGKELNGKQIYV 96
Score = 103 (41.3 bits), Expect = 0.00032, P = 0.00032
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G LY+ NLD G+ +E +++ FS G + + + GRSKG V +S +A AV
Sbjct: 126 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVT 184
Query: 83 RYNNVQLDGKPMKIEI 98
N + KP+ + +
Sbjct: 185 EMNGRIVATKPLYVAL 200
>UNIPROTKB|Q56JZ7 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
Length = 217
Score = 113 (44.8 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
+Y+SNL + ++N D+ +FS+ G + + +I D+ + RSKG A +++ + A +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTRAI 71
Query: 85 NNVQLDGKPMKIEIVGTN 102
NN QL G+ +K I N
Sbjct: 72 NNKQLFGRVIKASIAIDN 89
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 121 (47.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
+ LY+ NLD +S+E +KE+FS G + + D +G SKG+ V ++ +A A+ +
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ 377
Query: 84 YNNVQLDGKPMKIEI 98
+ ++ KP+ + I
Sbjct: 378 LSGKMIESKPLYVAI 392
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 31/115 (26%), Positives = 59/115 (51%)
Query: 6 VSAFPVQQAGRASAIETG-TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRS 63
V++ P G A+A + G T LY+ +LD+ V++ + + F ++G + + D + RS
Sbjct: 18 VTSAPATSGG-ATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRS 76
Query: 64 KGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGN 118
G V ++ DA A++ N + L GKP+++ + + R + A N+ N
Sbjct: 77 LGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSG-AGNIFIKN 130
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRAD 76
A+A E L++ NL+ V+ E + ELF + G + + I D+ G+ K A V +
Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVS 62
Query: 77 AVAAVKRYNNVQLDGKPMKIE 97
A+ N ++L G+P+KI+
Sbjct: 63 VPYAMNLLNGIKLYGRPIKIQ 83
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRAD 76
A+A E L++ NL+ V+ E + ELF + G + + I D+ G+ K A V +
Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVS 62
Query: 77 AVAAVKRYNNVQLDGKPMKIE 97
A+ N ++L G+P+KI+
Sbjct: 63 VPYAMNLLNGIKLYGRPIKIQ 83
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 19/74 (25%), Positives = 41/74 (55%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
+Y+ N + + E++ FS +G + I DR +GR +G A + ++ A AV++
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 85 NNVQLDGKPMKIEI 98
N + +G+P+++ +
Sbjct: 67 NGAEFNGRPLRVNL 80
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 120 (47.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N V +E +KELFS+ G + D +G+SKG V Y + DA AV+
Sbjct: 93 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 152
Query: 84 YNNVQLDGK 92
N ++ GK
Sbjct: 153 MNGKEISGK 161
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 119 (46.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 23/86 (26%), Positives = 50/86 (58%)
Query: 14 AGRASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVY 71
A R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 13 AARDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEY 72
Query: 72 SRRADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 73 QDQETALSAMRNLNGREFSGRALRVD 98
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 120 (47.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N V +E+++ELFS+ G + D SG+SKG V Y + DA AV+
Sbjct: 120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 84 YNNVQLDGK 92
N ++ GK
Sbjct: 180 MNGKEMSGK 188
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
+ +Y+ N++ V+ E++++ FS+ G + + D G+SKG V +S +A+ AVK
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 84 YNNVQLDGKPMKIEI 98
++ GKP+ + I
Sbjct: 364 FHGQMFHGKPLYVAI 378
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 118 (46.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 23/86 (26%), Positives = 50/86 (58%)
Query: 14 AGRASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVY 71
A R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 9 AVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 68
Query: 72 SRRADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 69 QDQETALSAMRNLNGREFSGRALRVD 94
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N V +E +KELFS+ G + D +G+SKG V Y + DA AV+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 84 YNNVQLDGK 92
N ++ GK
Sbjct: 251 MNGKEISGK 259
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 118 (46.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|Q8TBF4 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
Length = 217
Score = 112 (44.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGR-SKGTAEVVYSRRADAVAAVKRY 84
+Y+SNL + ++N D+ +FS+ G + + +I D+ R SKG A +++ + A +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
Query: 85 NNVQLDGKPMKIEIVGTN 102
NN QL G+ +K I N
Sbjct: 72 NNKQLFGRVIKASIAIDN 89
>UNIPROTKB|Q3MHY8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9913 "Bos
taurus" [GO:0007126 "meiosis" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
EMBL:BC104518 IPI:IPI00690650 RefSeq:NP_001029659.1
UniGene:Bt.56272 ProteinModelPortal:Q3MHY8 SMR:Q3MHY8 PRIDE:Q3MHY8
Ensembl:ENSBTAT00000010804 GeneID:515307 KEGG:bta:515307 CTD:10179
eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
InParanoid:Q3MHY8 KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN
NextBio:20871760 Uniprot:Q3MHY8
Length = 262
Score = 114 (45.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 30/106 (28%), Positives = 56/106 (52%)
Query: 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRAD 76
A+A E L++ NL+ V+ E + ELF + G + + I D+ G+ K A V +
Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVS 62
Query: 77 AVAAVKRYNNVQLDGKPMKIEI-VGTNIATRTAAPA-ANVNFGNSN 120
A+ N ++L G+P+KI+ G++ A++ + + + GNS+
Sbjct: 63 VPYAMNLLNGIKLFGRPIKIQFRAGSSHASQEVSLSYPQHHVGNSS 108
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N V +E+++ELFS+ G + D SG+SKG V Y + DA AV+
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 84 YNNVQLDGK 92
N ++ GK
Sbjct: 251 MNGKEMSGK 259
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N V +E +KELFS+ G + D +G+SKG V Y + DA AV+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 84 YNNVQLDGK 92
N ++ GK
Sbjct: 251 MNGKEISGK 259
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 120 (47.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G LY+ NLD V ++ +K+ F G++ + D +GRSKG V + + +A +AV
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVT 375
Query: 83 RYNNVQLDGKPMKIEI 98
N+ + KP+ + I
Sbjct: 376 EMNSKMVCSKPLYVAI 391
>UNIPROTKB|Q3ZBJ1 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9913 "Bos taurus" [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0005845 "mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 HOVERGEN:HBG052581 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:BC103267 IPI:IPI00687118
RefSeq:NP_001029568.1 UniGene:Bt.49382 ProteinModelPortal:Q3ZBJ1
SMR:Q3ZBJ1 STRING:Q3ZBJ1 PRIDE:Q3ZBJ1 Ensembl:ENSBTAT00000011684
GeneID:510872 KEGG:bta:510872 CTD:22916
GeneTree:ENSGT00390000003197 InParanoid:Q3ZBJ1 OMA:RQDYDPA
NextBio:20869659 GO:GO:0046833 GO:GO:0006408 Uniprot:Q3ZBJ1
Length = 156
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRADAVAAVKRY 84
LY+ NL + + E I ELFS+ GD+K+ + D+ ++ G V Y RADA A++
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
Query: 85 NNVQLDGKPMKIE 97
N +LD + ++ +
Sbjct: 102 NGTRLDDRIIRTD 114
>UNIPROTKB|E2RFC9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA] [GO:0005845 "mRNA cap binding complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0005845 GO:GO:0000340
GO:GO:0006370 PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AAEX03017103
RefSeq:XP_535779.1 ProteinModelPortal:E2RFC9 SMR:E2RFC9
PRIDE:E2RFC9 Ensembl:ENSCAFT00000020794 GeneID:478603
KEGG:cfa:478603 NextBio:20853918 Uniprot:E2RFC9
Length = 156
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRADAVAAVKRY 84
LY+ NL + + E I ELFS+ GD+K+ + D+ ++ G V Y RADA A++
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
Query: 85 NNVQLDGKPMKIE 97
N +LD + ++ +
Sbjct: 102 NGTRLDDRIIRTD 114
>UNIPROTKB|P52298 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0006408 "snRNA export
from nucleus" evidence=ISS;NAS] [GO:0000340 "RNA 7-methylguanosine
cap binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP;IDA;TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IDA;TAS] [GO:0005845
"mRNA cap binding complex" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0006446 "regulation of translational
initiation" evidence=IDA] [GO:0046833 "positive regulation of RNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000339 "RNA cap
binding" evidence=NAS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IDA] [GO:0000387 "spliceosomal snRNP
assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
[GO:0050434 "positive regulation of viral transcription"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0016032 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006368 GO:GO:0006406
GO:GO:0031047 GO:GO:0005845 GO:GO:0000340 GO:GO:0000387
GO:GO:0034660 EMBL:CH471191 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006370 GO:GO:0050434 GO:GO:0045292 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 PDB:3FEX PDB:3FEY PDBsum:3FEX
PDBsum:3FEY GO:GO:0008334 HOGENOM:HOG000217589 HOVERGEN:HBG052581
PANTHER:PTHR18847 PDB:1H2T PDB:1H2U PDB:1H2V PDB:1H6K PDB:1N52
PDB:1N54 PDBsum:1H2T PDBsum:1H2U PDBsum:1H2V PDBsum:1H6K
PDBsum:1N52 PDBsum:1N54 KO:K12883 CTD:22916 OMA:RQDYDPA
GO:GO:0046833 GO:GO:0006408 EMBL:X84157 EMBL:D59253 EMBL:AK297506
EMBL:AK315903 EMBL:AK316601 EMBL:AY644767 EMBL:BT006842
EMBL:BC001255 IPI:IPI00183500 IPI:IPI00927860 PIR:I37222 PIR:S60109
RefSeq:NP_001036005.1 RefSeq:NP_031388.2 UniGene:Hs.591671
DisProt:DP00393 ProteinModelPortal:P52298 SMR:P52298 DIP:DIP-33246N
IntAct:P52298 MINT:MINT-248711 STRING:P52298 PhosphoSite:P52298
DMDM:1705651 PaxDb:P52298 PRIDE:P52298 DNASU:22916
Ensembl:ENST00000321256 Ensembl:ENST00000452404 GeneID:22916
KEGG:hsa:22916 UCSC:uc003fxb.1 UCSC:uc011btz.1
GeneCards:GC03M196662 HGNC:HGNC:7659 HPA:HPA044850 MIM:605133
neXtProt:NX_P52298 PharmGKB:PA31462 InParanoid:P52298
PhylomeDB:P52298 ChiTaRS:NCBP2 EvolutionaryTrace:P52298
GenomeRNAi:22916 NextBio:43603 ArrayExpress:P52298 Bgee:P52298
CleanEx:HS_NCBP2 Genevestigator:P52298 GermOnline:ENSG00000114503
Uniprot:P52298
Length = 156
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRADAVAAVKRY 84
LY+ NL + + E I ELFS+ GD+K+ + D+ ++ G V Y RADA A++
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
Query: 85 NNVQLDGKPMKIE 97
N +LD + ++ +
Sbjct: 102 NGTRLDDRIIRTD 114
>UNIPROTKB|F2Z5Q9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
PANTHER:PTHR18847 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA EMBL:CU862047 RefSeq:XP_003358812.2 UniGene:Ssc.56609
ProteinModelPortal:F2Z5Q9 SMR:F2Z5Q9 PRIDE:F2Z5Q9
Ensembl:ENSSSCT00000024784 GeneID:100156513 KEGG:ssc:100156513
Uniprot:F2Z5Q9
Length = 156
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRADAVAAVKRY 84
LY+ NL + + E I ELFS+ GD+K+ + D+ ++ G V Y RADA A++
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
Query: 85 NNVQLDGKPMKIE 97
N +LD + ++ +
Sbjct: 102 NGTRLDDRIIRTD 114
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 20/69 (28%), Positives = 41/69 (59%)
Query: 30 NLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQ 88
N+ Y + E +K++FSEVG + + + YDR +G+ KG Y + A++A++ N +
Sbjct: 3 NIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE 62
Query: 89 LDGKPMKIE 97
G+ ++++
Sbjct: 63 FSGRALRVD 71
>MGI|MGI:1915342 [details] [associations]
symbol:Ncbp2 "nuclear cap binding protein subunit 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005845
"mRNA cap binding complex" evidence=ISO] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1915342
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 EMBL:CH466521 GO:GO:0031047
GO:GO:0005845 GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724
GO:GO:0006370 GO:GO:0045292 HOGENOM:HOG000217589 HOVERGEN:HBG052581
OrthoDB:EOG470TJG PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA GO:GO:0046833
GO:GO:0006408 EMBL:AK008980 EMBL:AK012659 EMBL:AK077841
EMBL:AK147027 EMBL:BC118926 IPI:IPI00132019 RefSeq:NP_080830.1
UniGene:Mm.290027 ProteinModelPortal:Q9CQ49 SMR:Q9CQ49
STRING:Q9CQ49 PhosphoSite:Q9CQ49 PaxDb:Q9CQ49 PRIDE:Q9CQ49
Ensembl:ENSMUST00000023460 GeneID:68092 KEGG:mmu:68092
UCSC:uc007yxz.2 InParanoid:Q0VF93 NextBio:326400 Bgee:Q9CQ49
CleanEx:MM_NCBP2 Genevestigator:Q9CQ49
GermOnline:ENSMUSG00000022774 Uniprot:Q9CQ49
Length = 156
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRADAVAAVKRY 84
LY+ NL + + E I ELFS+ GD+K+ + D+ ++ G V Y RADA A++
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
Query: 85 NNVQLDGKPMKIE 97
N +LD + ++ +
Sbjct: 102 NGTRLDDRIIRTD 114
>RGD|1596188 [details] [associations]
symbol:Ncbp2 "nuclear cap binding protein subunit 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA;ISO] [GO:0000340
"RNA 7-methylguanosine cap binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005845 "mRNA cap
binding complex" evidence=ISO] [GO:0005846 "nuclear cap binding
complex" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA;ISO] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006446 "regulation of translational initiation" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO;ISS] [GO:0046833 "positive regulation of
RNA export from nucleus" evidence=ISS] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1596188 GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 GeneTree:ENSGT00390000003197
OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:BC161994
IPI:IPI00192753 RefSeq:NP_001102995.1 RefSeq:XP_003751123.1
UniGene:Rn.204538 ProteinModelPortal:B1WC40 SMR:B1WC40
STRING:B1WC40 PhosphoSite:B1WC40 PRIDE:B1WC40
Ensembl:ENSRNOT00000002381 GeneID:100911481 GeneID:689116
KEGG:rno:100911481 KEGG:rno:689116 UCSC:RGD:1596188 CTD:80235
NextBio:737969 Genevestigator:B1WC40 Uniprot:B1WC40
Length = 156
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRADAVAAVKRY 84
LY+ NL + + E I ELFS+ GD+K+ + D+ ++ G V Y RADA A++
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
Query: 85 NNVQLDGKPMKIE 97
N +LD + ++ +
Sbjct: 102 NGTRLDDRIIRTD 114
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 120 (47.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N V +E+++ELFS+ G + D SG+SKG V Y + DA AV+
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 84 YNNVQLDGK 92
N ++ GK
Sbjct: 251 MNGKEMSGK 259
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 118 (46.6 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N + +E +KELF + G + D SG+SKG V + R DA AV
Sbjct: 23 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 82
Query: 84 YNNVQLDGKPMKI 96
N +L+GK + +
Sbjct: 83 MNGKELNGKQIYV 95
Score = 103 (41.3 bits), Expect = 0.00089, P = 0.00089
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G LY+ NLD G+ +E +++ FS G + + + GRSKG V +S +A AV
Sbjct: 125 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVT 183
Query: 83 RYNNVQLDGKPMKIEI 98
N + KP+ + +
Sbjct: 184 EMNGRIVATKPLYVAL 199
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 118 (46.6 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 118 (46.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 29/101 (28%), Positives = 54/101 (53%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVK 82
T LY+ NL ++++ + +FS G + + +I D+ +GR +G A V Y++R +A A+K
Sbjct: 179 TNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIK 238
Query: 83 RYNNVQLDG--KPMKIEIVGTNIATRTAAPAANVNFGNSNG 121
NN +G +P+ + + + + A A + GN G
Sbjct: 239 ALNNTVPEGGSQPIWVRLAEEHGKAKAAQFMAQIGGGNGGG 279
>ZFIN|ZDB-GENE-030131-5228 [details] [associations]
symbol:rnps1 "RNA binding protein S1, serine-rich
domain" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5228 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 GeneTree:ENSGT00700000104336 CTD:10921
eggNOG:NOG331533 HOGENOM:HOG000044325 KO:K14325 EMBL:BC057251
EMBL:BC065953 IPI:IPI00490683 RefSeq:NP_956055.1 UniGene:Dr.75879
ProteinModelPortal:Q6PG31 STRING:Q6PG31 Ensembl:ENSDART00000128731
GeneID:327020 KEGG:dre:327020 InParanoid:Q6PG31 NextBio:20809844
Bgee:Q6PG31 Uniprot:Q6PG31
Length = 283
Score = 114 (45.2 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 34/98 (34%), Positives = 47/98 (47%)
Query: 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR--SGRSKGTAEVVYSR 73
R S TKLY+ L V+ + I+E+F+ G +K + DR SKG A V Y
Sbjct: 129 RRSPSPKPTKLYLGRLTRNVTKDHIQEIFATYGKIKMIDMPSDRLHPNVSKGYAYVEYES 188
Query: 74 RADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPA 111
DA A+K + Q+DG+ EI T I + PA
Sbjct: 189 PEDAQKALKHMDGGQIDGQ----EITATAILAQRIRPA 222
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 116 (45.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G KLYI NLD + +E ++ FS G + R + + G+SKG + +S DA A+
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMT 350
Query: 83 RYNNVQLDGKPMKIEI 98
N L KP+ I +
Sbjct: 351 EMNGRILGSKPLSIAL 366
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 118 (46.6 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 117 (46.2 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 21/73 (28%), Positives = 44/73 (60%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
+++ N+ Y + E +KE+FSEVG + + +DR SG+ KG Y + A++A++
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 85 NNVQLDGKPMKIE 97
N ++ G+ ++++
Sbjct: 78 NGYEIGGRTLRVD 90
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 114 (45.2 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
L + L + D++E+FS+ G + SI YD+ S RS+G A V + DA A +R
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDAKEAKERA 179
Query: 85 NNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
N ++LDG+ ++++ +I R P + G
Sbjct: 180 NGMELDGRRIRVDF---SITKRPHTPTPGIYMG 209
>UNIPROTKB|E1BTK3 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
NextBio:20821039 Uniprot:E1BTK3
Length = 216
Score = 111 (44.1 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGR-SKGTAEVVYSRRADAVAAVKRY 84
+Y+SNL + ++N D+ +FS+ G + + +I D+ R SKG A +++ + A +
Sbjct: 12 VYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESAQNCSRAL 71
Query: 85 NNVQLDGKPMKIEIVGTN 102
NN QL G+ +K I N
Sbjct: 72 NNKQLFGRVIKASIAIDN 89
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 115 (45.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 26/86 (30%), Positives = 50/86 (58%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVV 70
+Q +AS E G +LY+ NL Y +++ ++ ++F E G + I YD+ + RS+G V
Sbjct: 106 KQTTQASG-EEG-RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVT 163
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKI 96
+A A++ +N+ Q+ G+ +K+
Sbjct: 164 MGSIEEAKEAMQMFNSSQIGGRTVKV 189
>MGI|MGI:1914260 [details] [associations]
symbol:Rbm7 "RNA binding motif protein 7" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1914260 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
CTD:10179 eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN EMBL:AF458961 EMBL:AK005200
EMBL:AK006755 EMBL:AK008645 EMBL:AK151056 EMBL:BC054774
IPI:IPI00133061 RefSeq:NP_659197.2 UniGene:Mm.76911
ProteinModelPortal:Q9CQT2 SMR:Q9CQT2 STRING:Q9CQT2
PhosphoSite:Q9CQT2 PaxDb:Q9CQT2 PRIDE:Q9CQT2
Ensembl:ENSMUST00000170000 GeneID:67010 KEGG:mmu:67010
InParanoid:Q9CQT2 NextBio:323298 Bgee:Q9CQT2 CleanEx:MM_RBM7
Genevestigator:Q9CQT2 GermOnline:ENSMUSG00000042396 Uniprot:Q9CQT2
Length = 265
Score = 113 (44.8 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 28/94 (29%), Positives = 51/94 (54%)
Query: 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRAD 76
A+A E L++ NL+ V+ E + ELF + G + + I D+ G+ K A V +
Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVS 62
Query: 77 AVAAVKRYNNVQLDGKPMKIEI-VGTNIATRTAA 109
A+ N ++L G+P+KI+ G++ A++ A+
Sbjct: 63 VPYAMNLLNGIKLFGRPIKIQFRSGSSHASQDAS 96
>UNIPROTKB|C0H859 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8030 "Salmo salar" [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
GO:GO:0006408 EMBL:BT043732 EMBL:BT058515 EMBL:BT060223
UniGene:Ssa.8109 ProteinModelPortal:C0H859 Uniprot:C0H859
Length = 155
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRADAV 78
++ LY+ NL + + E + ELFS+ GD+KR I D+ ++ G V Y R DA
Sbjct: 35 LKQANTLYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRTDAE 94
Query: 79 AAVKRYNNVQLDGKPMKIE 97
A++ N +LD + ++ +
Sbjct: 95 NAMRFVNGTRLDDRIIRTD 113
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 118 (46.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 118 (46.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 118 (46.6 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 23/86 (26%), Positives = 50/86 (58%)
Query: 14 AGRASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVY 71
A R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 5 AVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 64
Query: 72 SRRADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 65 QDQETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 118 (46.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 118 (46.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 118 (46.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N + +E +KELF + G + D SG+SKG V + R DA AV
Sbjct: 127 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 186
Query: 84 YNNVQLDGKPMKI 96
N +L+GK + +
Sbjct: 187 MNGKELNGKQIYV 199
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 118 (46.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 118 (46.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 118 (46.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 118 (46.6 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|I3LBN9 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
Uniprot:I3LBN9
Length = 280
Score = 113 (44.8 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
L + L + D++E+FS+ G + SI YD+ S RS+G A V + DA A +R
Sbjct: 112 LGVFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 171
Query: 85 NNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
N ++LDG+ ++++ +I R P + G
Sbjct: 172 NGMELDGRRIRVDF---SITKRPHTPTPGIYMG 201
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 118 (46.6 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 118 (46.6 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 118 (46.6 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>ZFIN|ZDB-GENE-030131-6898 [details] [associations]
symbol:hnrnpm "heterogeneous nuclear
ribonucleoprotein M" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024667
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6898 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 GeneTree:ENSGT00410000025635
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:BX649327
IPI:IPI01024026 Ensembl:ENSDART00000137689 ArrayExpress:F1R2E0
Bgee:F1R2E0 Uniprot:F1R2E0
Length = 715
Score = 119 (46.9 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 26/88 (29%), Positives = 47/88 (53%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G+ ++++NLDY V + +KE+F G + R I D+ G+S+G V + +AV AV
Sbjct: 232 GSTIFVANLDYKVGWKKLKEVFGMAGMVVRADILEDKDGKSRGMGTVTFDMPIEAVQAVS 291
Query: 83 RYNNVQLDGKPMKIEIVGTNIATRTAAP 110
+N L + M +++ ++ AP
Sbjct: 292 MFNGQLLFNRVMHVKLDEKSLPKGDFAP 319
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 112 (44.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVA 79
E ++YI N+ V+NE + +L E G +++ + YD+ SGRS+ DA A
Sbjct: 73 EAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANA 132
Query: 80 AVKRYNNVQLDGKPMKIEIVGTNIAT 105
V++ N ++G+ +K+ I IA+
Sbjct: 133 VVEKLNGNTVEGREIKVNITEKPIAS 158
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 118 (46.6 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 116 (45.9 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G KLYI NLD + +E ++ FS G + R + + G+SKG + +S DA A+
Sbjct: 350 GVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMT 408
Query: 83 RYNNVQLDGKPMKIEI 98
N L KP+ I +
Sbjct: 409 EMNGRILGSKPLSIAL 424
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 118 (46.6 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 26/98 (26%), Positives = 50/98 (51%)
Query: 13 QAGRASAIETGT-KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVY 71
+ RA++ E +L +SN+ + +++ED+K +F GD++ + D RSKG + Y
Sbjct: 328 ELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQY 387
Query: 72 SRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAA 109
A A+++ N L G+ M++ + T T +
Sbjct: 388 RNPISARNALEKMNGFDLAGRNMRVCLGNDKFTTETTS 425
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 118 (46.6 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 113 (44.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
L + L + D++E+FS+ G + SI YD+ S RS+G A V + DA A +R
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 85 NNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
N ++LDG+ ++++ +I R P + G
Sbjct: 180 NGMELDGRRIRVDF---SITKRPHTPTPGIYMG 209
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 113 (44.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
L + L + D++E+FS+ G + SI YD+ S RS+G A V + DA A +R
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 85 NNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
N ++LDG+ ++++ +I R P + G
Sbjct: 180 NGMELDGRRIRVDF---SITKRPHTPTPGIYMG 209
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 113 (44.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
L + L + D++E+FS+ G + SI YD+ S RS+G A V + DA A +R
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 85 NNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
N ++LDG+ ++++ +I R P + G
Sbjct: 180 NGMELDGRRIRVDF---SITKRPHTPTPGIYMG 209
>MGI|MGI:106016 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
Uniprot:P62996
Length = 288
Score = 113 (44.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
L + L + D++E+FS+ G + SI YD+ S RS+G A V + DA A +R
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 85 NNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
N ++LDG+ ++++ +I R P + G
Sbjct: 180 NGMELDGRRIRVDF---SITKRPHTPTPGIYMG 209
>RGD|619886 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000302 "response to reactive oxygen species"
evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
Length = 288
Score = 113 (44.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
L + L + D++E+FS+ G + SI YD+ S RS+G A V + DA A +R
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 85 NNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
N ++LDG+ ++++ +I R P + G
Sbjct: 180 NGMELDGRRIRVDF---SITKRPHTPTPGIYMG 209
>TAIR|locus:2167649 [details] [associations]
symbol:CBP20 "CAP-binding protein 20" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000339 "RNA cap
binding" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0005845 "mRNA cap binding complex" evidence=TAS]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA;IMP] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0009086 "methionine biosynthetic
process" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AB005239 GO:GO:0005845 eggNOG:COG0724
GO:GO:0006370 GO:GO:0031053 GO:GO:0000339 HOGENOM:HOG000217589
PANTHER:PTHR18847 GO:GO:0000394 EMBL:AF140219 EMBL:BT004813
EMBL:AK227850 IPI:IPI00549008 RefSeq:NP_001078705.1
RefSeq:NP_199233.1 UniGene:At.23549 HSSP:P52298
ProteinModelPortal:Q9XFD1 SMR:Q9XFD1 IntAct:Q9XFD1 STRING:Q9XFD1
PaxDb:Q9XFD1 PRIDE:Q9XFD1 EnsemblPlants:AT5G44200.1
EnsemblPlants:AT5G44200.2 GeneID:834443 KEGG:ath:AT5G44200
TAIR:At5g44200 InParanoid:Q9XFD1 KO:K12883 OMA:YISGTIL
PhylomeDB:Q9XFD1 ProtClustDB:CLSN2687230 Genevestigator:Q9XFD1
Uniprot:Q9XFD1
Length = 257
Score = 112 (44.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRADA 77
A+ T +YI N+ + + E + ELFS G++K+ + D++ ++ G V++ R D
Sbjct: 29 ALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDT 88
Query: 78 VAAVKRYNNVQLDGKPMKIE 97
AVK + LD +P++++
Sbjct: 89 EDAVKYISGTILDDRPIRVD 108
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 23/86 (26%), Positives = 50/86 (58%)
Query: 14 AGRASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVY 71
A R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 5 AVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 64
Query: 72 SRRADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 65 QDQETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 23/86 (26%), Positives = 50/86 (58%)
Query: 14 AGRASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVY 71
A R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 5 AVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 64
Query: 72 SRRADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 65 QDQETALSAMRNLNGREFSGRALRVD 90
>ZFIN|ZDB-GENE-050306-51 [details] [associations]
symbol:rbm8a "RNA binding motif protein 8A"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050306-51 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028
eggNOG:COG0724 GeneTree:ENSGT00550000074641 CTD:9939
HOGENOM:HOG000183826 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:BC090261 IPI:IPI00505312 RefSeq:NP_001013363.1
UniGene:Dr.76821 HSSP:Q9Y5S9 ProteinModelPortal:Q5D018 SMR:Q5D018
STRING:Q5D018 PRIDE:Q5D018 Ensembl:ENSDART00000018253 GeneID:503767
KEGG:dre:503767 InParanoid:Q5D018 NextBio:20866311 Bgee:Q5D018
Uniprot:Q5D018
Length = 174
Score = 109 (43.4 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 25/86 (29%), Positives = 49/86 (56%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVY 71
+ G ++E G L+++ + + ED+ + F+E G++K ++ DR +G KG A V Y
Sbjct: 63 EPGPQRSVE-GWILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEY 121
Query: 72 SRRADAVAAVKRYNNVQLDGKPMKIE 97
+A AA++ N +L G+P+ ++
Sbjct: 122 ETYKEAQAAMEGLNGQELMGQPISVD 147
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 23/86 (26%), Positives = 50/86 (58%)
Query: 14 AGRASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVY 71
A R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 5 AVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 64
Query: 72 SRRADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 65 QDQETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 23/86 (26%), Positives = 50/86 (58%)
Query: 14 AGRASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVY 71
A R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 5 AVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 64
Query: 72 SRRADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 65 QDQETALSAMRNLNGREFSGRALRVD 90
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 23/86 (26%), Positives = 50/86 (58%)
Query: 14 AGRASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVY 71
A R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 5 AVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEY 64
Query: 72 SRRADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 65 QDQETALSAMRNLNGREFSGRALRVD 90
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N + +E +KELF + G + D SG+SKG V + R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 84 YNNVQLDGKPMKI 96
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N + +E +KELF + G + D SG+SKG V + R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 84 YNNVQLDGKPMKI 96
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 110 (43.8 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 9 FPVQQAGRASAIE--TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGT 66
FP ++A + T T +++ N+ + +E +KELF E G + + D SG+SKG
Sbjct: 18 FPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGF 77
Query: 67 AEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96
V Y A AV + +DGK + +
Sbjct: 78 GFVRYETHEAAQKAVLDLHGKSIDGKVLYV 107
Score = 106 (42.4 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G +YI NLD +++E +KE FS G + R + + G+ KG V +S +A AV
Sbjct: 137 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVD 195
Query: 83 RYNNVQLDGKPMKIEI 98
N + KP+ + +
Sbjct: 196 EMNGRIVGSKPLHVTL 211
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 118 (46.6 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 22/84 (26%), Positives = 49/84 (58%)
Query: 16 RASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR 73
R A++ + +++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 74 RADAVAAVKRYNNVQLDGKPMKIE 97
+ A++A++ N + G+ ++++
Sbjct: 67 QETALSAMRNLNGREFSGRALRVD 90
>UNIPROTKB|F1SJV7 [details] [associations]
symbol:LOC100522453 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 KO:K13188 OMA:DRHYSRE EMBL:CU856090
RefSeq:XP_003129925.1 Ensembl:ENSSSCT00000032163 GeneID:100522453
KEGG:ssc:100522453 Uniprot:F1SJV7
Length = 265
Score = 112 (44.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 30/106 (28%), Positives = 56/106 (52%)
Query: 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRAD 76
A+A E L++ NL+ V+ E + ELF + G + + I D+ G+ K A V +
Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVS 62
Query: 77 AVAAVKRYNNVQLDGKPMKIEI-VGTNIATRTAAPA-ANVNFGNSN 120
A+ N ++L G+P+KI+ G++ A++ + + + GNS+
Sbjct: 63 VPYAMNLLNGIKLFGRPIKIQFRSGSSHASQEVSLSYPQHHVGNSS 108
>UNIPROTKB|F5GY08 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01012450 ProteinModelPortal:F5GY08 SMR:F5GY08
Ensembl:ENST00000544582 ArrayExpress:F5GY08 Bgee:F5GY08
Uniprot:F5GY08
Length = 220
Score = 110 (43.8 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRAD 76
A+A E L++ NL+ V+ E + ELF + G + + I D+ G+ K A V +
Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVS 62
Query: 77 AVAAVKRYNNVQLDGKPMKIE 97
A+ N ++L G+P+KI+
Sbjct: 63 VPYAMNLLNGIKLYGRPIKIQ 83
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 110 (43.8 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKR 83
KL+I L Y + + ++E FS+ G + + + DR + RS+G V + DA A+
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 84 YNNVQLDGKPMKIEIVG 100
N Q+DG+ ++++ G
Sbjct: 84 MNGKQVDGRMIRVDEAG 100
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 117 (46.2 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 28/85 (32%), Positives = 43/85 (50%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVY 71
+QA + + T +YI NL + +E +++LFS G + D SG+SKG V +
Sbjct: 179 RQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSF 238
Query: 72 SRRADAVAAVKRYNNVQLDGKPMKI 96
R DA AV N L+GK + +
Sbjct: 239 ERHEDARKAVDEMNGKDLNGKQIYV 263
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 113 (44.8 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 27/96 (28%), Positives = 46/96 (47%)
Query: 1 MFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRS 60
+F Q + ++A + + +YI N + +E +K+LF + G + D S
Sbjct: 168 VFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES 227
Query: 61 GRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96
G+SKG V + R DA AV N +L+GK + +
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>WB|WBGene00004705 [details] [associations]
symbol:rsp-8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0040010
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0000398 GeneTree:ENSGT00700000104309 HSSP:Q14103 KO:K12897
eggNOG:NOG297815 EMBL:Z92826 GeneID:176613 KEGG:cel:CELE_C18D11.4
CTD:176613 PIR:T19389 RefSeq:NP_001255142.1
ProteinModelPortal:Q9XTZ2 SMR:Q9XTZ2 DIP:DIP-26572N
MINT:MINT-1084022 STRING:Q9XTZ2 PaxDb:Q9XTZ2
EnsemblMetazoa:C18D11.4a.1 EnsemblMetazoa:C18D11.4a.2
UCSC:C18D11.4.1 WormBase:C18D11.4a InParanoid:Q9XTZ2 OMA:RENPQPS
NextBio:893300 Uniprot:Q9XTZ2
Length = 309
Score = 112 (44.5 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 26/97 (26%), Positives = 50/97 (51%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
L + NL + +D++++F E G++ + + YDR SG S+G + ++ DA AA +
Sbjct: 78 LGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKL 137
Query: 85 NNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNG 121
N LDG ++++ ++ R +P G+ G
Sbjct: 138 CNTDLDGHKIRVDF---SLTKRGHSPTPGQYMGDRRG 171
>ZFIN|ZDB-GENE-040426-1094 [details] [associations]
symbol:tra2b "transformer 2 beta homolog
(Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1094
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q9V535
HOVERGEN:HBG107480 KO:K12897 CTD:6434 EMBL:BC049051 IPI:IPI00493400
RefSeq:NP_957491.1 UniGene:Dr.9221 ProteinModelPortal:Q7ZUG9
SMR:Q7ZUG9 STRING:Q7ZUG9 PRIDE:Q7ZUG9 GeneID:394172 KEGG:dre:394172
InParanoid:Q7ZUG9 NextBio:20815117 ArrayExpress:Q7ZUG9 Bgee:Q7ZUG9
Uniprot:Q7ZUG9
Length = 278
Score = 111 (44.1 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
L + L + D++E+FS+ G L I YD+ S RS+G A V + R D+ A +R
Sbjct: 125 LGVFGLSLYTTERDLREVFSKYGPLSDVCIVYDQQSRRSRGFALVYFENREDSKEAKERA 184
Query: 85 NNVQLDGKPMKIE 97
N ++LDG+ ++++
Sbjct: 185 NGMELDGRRIRVD 197
>DICTYBASE|DDB_G0286007 [details] [associations]
symbol:rbm8A "RNA-binding motif protein 8A"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0286007
GenomeReviews:CM000153_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12876 EMBL:AAFI02000084 eggNOG:NOG246776
RefSeq:XP_637941.1 ProteinModelPortal:Q54ME8 SMR:Q54ME8
STRING:Q54ME8 EnsemblProtists:DDB0233616 GeneID:8625394
KEGG:ddi:DDB_G0286007 InParanoid:Q54ME8 OMA:SERYSGK Uniprot:Q54ME8
Length = 187
Score = 109 (43.4 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 23/80 (28%), Positives = 47/80 (58%)
Query: 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADA 77
+IE G +++ N+ V D+ ++F+E G +K ++ DR +G +KG A + Y +R++A
Sbjct: 67 SIE-GWIIFVRNIQEEVQEPDLMDIFAEYGQIKNIHLNIDRRTGFTKGYALIEYEKRSEA 125
Query: 78 VAAVKRYNNVQLDGKPMKIE 97
A+K + +L G + ++
Sbjct: 126 EDAIKNGSGYELAGLKLSVD 145
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 107 (42.7 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 27/99 (27%), Positives = 50/99 (50%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVK 82
TKL+I L +G + +++ F+ GD+ + DR +GRS+G V ++ A AA+
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 83 RYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNG 121
+ +L+G+ +++ R +AP A G +G
Sbjct: 95 EMDGKELNGRHIRVNPAND----RPSAPRAYGGGGGYSG 129
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 109 (43.4 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N + +E +KELFS+ G + D +G+SKG V + + DA AV+
Sbjct: 191 TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEE 250
Query: 84 YNNVQLDGK 92
N ++GK
Sbjct: 251 MNGKDINGK 259
Score = 35 (17.4 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 91 GKPMKIEIVGTNIATRTAAPAANVNFGNSNGVP 123
G P+ + VG A ++ AP V VP
Sbjct: 476 GLPVSAQRVGVTTAGQSLAPRPPVAAPAPRAVP 508
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 113 (44.8 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 29/82 (35%), Positives = 43/82 (52%)
Query: 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRA 75
A A G KL+I L+ S + ++ FS+ G + + DR + +S+G A V Y
Sbjct: 2 AEADRPG-KLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPG 60
Query: 76 DAVAAVKRYNNVQLDGKPMKIE 97
DA A + N LDGKP+K+E
Sbjct: 61 DAKDAAREMNGKPLDGKPIKVE 82
>FB|FBgn0260010 [details] [associations]
symbol:rump "rumpelstiltskin" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008298
"intracellular mRNA localization" evidence=IMP] [GO:0008595
"anterior/posterior axis specification, embryo" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0035282 "segmentation"
evidence=IGI] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0007277 "pole cell development" evidence=IGI] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0005737
GO:GO:0007067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0030529 GO:GO:0045451 GO:GO:0007277
GeneTree:ENSGT00410000025635 FlyBase:FBgn0260010 ChiTaRS:rump
RefSeq:NP_649899.1 ProteinModelPortal:Q9VHC7 SMR:Q9VHC7
IntAct:Q9VHC7 MINT:MINT-319320 STRING:Q9VHC7 PRIDE:Q9VHC7
EnsemblMetazoa:FBtr0082123 GeneID:41138 KEGG:dme:Dmel_CG9373
UCSC:CG9373-RA CTD:41138 OMA:DYRWQDL PhylomeDB:Q9VHC7
GenomeRNAi:41138 NextBio:822366 ArrayExpress:Q9VHC7 Bgee:Q9VHC7
Uniprot:Q9VHC7
Length = 632
Score = 116 (45.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRY 84
K++++NLDY V N+ +K++F G ++ + D+ G S+G A + Y +AV A+
Sbjct: 233 KVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISML 292
Query: 85 NNVQLDGKPMKIEI 98
+ L + M + +
Sbjct: 293 DRQMLFDRRMTVRL 306
Score = 104 (41.7 bits), Expect = 0.00093, P = 0.00093
Identities = 19/74 (25%), Positives = 44/74 (59%)
Query: 25 KLYISNLDYGVSNEDIKELFSE-VGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
++YISN+ Y +D+K+LF VG ++ + +D SG+++G V + + A+++
Sbjct: 58 RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEK 117
Query: 84 YNNVQLDGKPMKIE 97
N +++G+ + ++
Sbjct: 118 MNRYEVNGRELVVK 131
>UNIPROTKB|Q9Y580 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 EMBL:CH471065 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 CTD:10179 eggNOG:NOG273605
HOGENOM:HOG000059553 HOVERGEN:HBG009324 KO:K13188 OrthoDB:EOG4W0XDN
EMBL:AF156098 EMBL:AK002015 EMBL:AK312619 EMBL:BC034381
IPI:IPI00001134 RefSeq:NP_057174.1 UniGene:Hs.7527
ProteinModelPortal:Q9Y580 SMR:Q9Y580 DIP:DIP-48833N IntAct:Q9Y580
MINT:MINT-1453692 STRING:Q9Y580 PhosphoSite:Q9Y580 DMDM:9978697
PRIDE:Q9Y580 DNASU:10179 Ensembl:ENST00000540163 GeneID:10179
KEGG:hsa:10179 UCSC:uc001pov.3 GeneCards:GC11P114305 HGNC:HGNC:9904
HPA:HPA013993 MIM:612413 neXtProt:NX_Q9Y580 PharmGKB:PA34269
PhylomeDB:Q9Y580 GenomeRNAi:10179 NextBio:38534 ArrayExpress:Q9Y580
Bgee:Q9Y580 CleanEx:HS_RBM7 Genevestigator:Q9Y580
GermOnline:ENSG00000076053 Uniprot:Q9Y580
Length = 266
Score = 110 (43.8 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRAD 76
A+A E L++ NL+ V+ E + ELF + G + + I D+ G+ K A V +
Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVS 62
Query: 77 AVAAVKRYNNVQLDGKPMKIE 97
A+ N ++L G+P+KI+
Sbjct: 63 VPYAMNLLNGIKLYGRPIKIQ 83
>UNIPROTKB|J3KPD3 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471065 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:DRHYSRE UniGene:Hs.7527 HGNC:HGNC:9904 EMBL:AP002373
ProteinModelPortal:J3KPD3 Ensembl:ENST00000375490 Uniprot:J3KPD3
Length = 267
Score = 110 (43.8 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRAD 76
A+A E L++ NL+ V+ E + ELF + G + + I D+ G+ K A V +
Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVS 62
Query: 77 AVAAVKRYNNVQLDGKPMKIE 97
A+ N ++L G+P+KI+
Sbjct: 63 VPYAMNLLNGIKLYGRPIKIQ 83
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 105 (42.0 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAV 78
A E L++ NL+ V+ E + ELF + G + + I D+ G+ K A V +
Sbjct: 2 AAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVP 61
Query: 79 AAVKRYNNVQLDGKPMKIE 97
A+ N ++L G+P+KI+
Sbjct: 62 YAMNLLNGIKLYGRPIKIQ 80
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 116 (45.9 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 27/108 (25%), Positives = 54/108 (50%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G LY+ N++ ++++ +++ FS G + + D +GRSKG V + + +A AAV
Sbjct: 342 GVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVT 401
Query: 83 RYNNVQLDGKPMKIEIVG------TNIATRTAAPAANVNFGN-SNGVP 123
N+ + KP+ + + +A++ A + G ++GVP
Sbjct: 402 DMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQASGVP 449
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 117 (46.2 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVVYSRRADAVA 79
ETG +L+I N+ Y S ED + LFS+ G L+ I D R+G+SKG V + ++ DA
Sbjct: 308 ETG-RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATR 366
Query: 80 AVKRYNNVQLDGKPMKI 96
A + + G+ + I
Sbjct: 367 AYRSLDKQIFQGRLLHI 383
>POMBASE|SPBC106.12c [details] [associations]
symbol:SPBC106.12c "THO complex subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0000347 "THO complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006397
"mRNA processing" evidence=ISS] [GO:0006406 "mRNA export from
nucleus" evidence=ISS] [GO:0034243 "regulation of transcription
elongation from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC106.12c GO:GO:0005730 GO:GO:0000184
GO:GO:0000166 EMBL:CU329671 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0034243 GO:GO:0000347 KO:K12881
PIR:T39269 RefSeq:NP_595161.1 ProteinModelPortal:Q9URV0
EnsemblFungi:SPBC106.12c.1 GeneID:2540184 KEGG:spo:SPBC106.12c
eggNOG:NOG328157 OMA:NERTNGF OrthoDB:EOG4DV8WK NextBio:20801316
Uniprot:Q9URV0
Length = 274
Score = 110 (43.8 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 36/147 (24%), Positives = 58/147 (39%)
Query: 28 ISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNV 87
+ NL Y V +D+ LF + R ++YDR+GRS+G+ +V + DA A K +
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPI-RVIMNYDRAGRSEGSCDVYFETSQDAEDAQKTLQST 147
Query: 88 QLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPXXXXX-XXXXXXXXXXXXXXXXXX 146
L G ++I ++ + P+ F + +P
Sbjct: 148 NLKGSEIQI--------SKKSPPSL---FDRISDMPHSARKPSRSSRSNRGFNRSSKKDD 196
Query: 147 XXXXXXXXXXXNEKISAEDLDADLDKY 173
N IS EDLD +LD+Y
Sbjct: 197 RSFRSSSKKSSNNSISHEDLDKELDEY 223
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 115 (45.5 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N + +E +K+LF + G + D SG+SKG V + R DA AV
Sbjct: 146 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 205
Query: 84 YNNVQLDGKPMKI 96
N +L+GK + +
Sbjct: 206 MNGKELNGKQIYV 218
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 115 (45.5 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N + +E +K+LF + G + D SG+SKG V + R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 84 YNNVQLDGKPMKI 96
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 115 (45.5 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N + +E +K+LF + G + D SG+SKG V + R DA AV
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 218
Query: 84 YNNVQLDGKPMKI 96
N +L+GK + +
Sbjct: 219 MNGKELNGKQIYV 231
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 115 (45.5 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N + +E +K+LF + G + D SG+SKG V + R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 84 YNNVQLDGKPMKI 96
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 115 (45.5 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N + +E +K+LF + G + D SG+SKG V + R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 84 YNNVQLDGKPMKI 96
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 115 (45.5 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N + +E +K+LF + G + D SG+SKG V + R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 84 YNNVQLDGKPMKI 96
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 115 (45.5 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N + +E +K+LF + G + D SG+SKG V + R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 84 YNNVQLDGKPMKI 96
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 115 (45.5 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N + +E +K+LF + G + D SG+SKG V + R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 84 YNNVQLDGKPMKI 96
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 23/78 (29%), Positives = 46/78 (58%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVK 82
T++Y+ NL +++ ++E FS G++ + DR + RS+G V YS ++A AAV
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 83 RYNNVQLDGKPMKIEIVG 100
+ +L+G+ + +++ G
Sbjct: 63 GMDGKELNGRRVSVKLFG 80
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 115 (45.5 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N + +E +K+LF + G + D SG+SKG V + R DA AV
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 84 YNNVQLDGKPMKI 96
N +L+GK + +
Sbjct: 251 MNGKELNGKQIYV 263
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 111 (44.1 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G +YI NLD + +E +KE FS G + R + + G+ KG V +S DA AV
Sbjct: 301 GVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQGKGFGVVCFSSFEDATKAVD 359
Query: 83 RYNNVQLDGKPMKIEI 98
N + KP+ + +
Sbjct: 360 EMNGRTVGSKPLHVTL 375
>TAIR|locus:2171780 [details] [associations]
symbol:AT5G65260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB013395 eggNOG:NOG238057
HOGENOM:HOG000208465 HSSP:P33240 OMA:GRANYYA EMBL:AF386984
EMBL:BT000018 IPI:IPI00548869 RefSeq:NP_201329.1 UniGene:At.24028
UniGene:At.9297 ProteinModelPortal:Q9FJN9 SMR:Q9FJN9 IntAct:Q9FJN9
STRING:Q9FJN9 PaxDb:Q9FJN9 PRIDE:Q9FJN9 EnsemblPlants:AT5G65260.1
GeneID:836651 KEGG:ath:AT5G65260 TAIR:At5g65260 InParanoid:Q9FJN9
PhylomeDB:Q9FJN9 ProtClustDB:CLSN2715990 ArrayExpress:Q9FJN9
Genevestigator:Q9FJN9 Uniprot:Q9FJN9
Length = 220
Score = 109 (43.4 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 27/103 (26%), Positives = 51/103 (49%)
Query: 1 MFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRS 60
M A ++ QAG+ +++ N+DY + E++++ F G + R +I D+
Sbjct: 71 MGAQDPASIAANQAGKEEV--DARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF 128
Query: 61 GRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 103
G+ KG A V + +AV + N +L G+ +K+ TN+
Sbjct: 129 GQPKGFAYVEFVE-VEAVQEALQLNESELHGRQLKVLQKRTNV 170
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 110 (43.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/105 (27%), Positives = 58/105 (55%)
Query: 14 AGRASAIETGT----KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAE 68
A A+ ++ G+ +LY+ +L + ++ + ++ +F G ++ + D +GRSKG
Sbjct: 79 AAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGF 138
Query: 69 VVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAAN 113
+ +S A A+++ N +L G+PMK VG ++ RT A +A+
Sbjct: 139 ITFSDSECAKKALEQLNGFELAGRPMK---VG-HVTERTDASSAS 179
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +Y+ N+D S E ++LFS G + + D+ G+SKG V + AV AV+
Sbjct: 233 TNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEE 292
Query: 84 YNNVQLDGKPMKI 96
N+ +++G+ + +
Sbjct: 293 LNDKEINGQKIYV 305
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G L++ NLD + +E ++E F G + + D +G+SKG V ++ +A A+
Sbjct: 335 GVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAIT 394
Query: 83 RYNNVQLDGKPMKIEI 98
N ++GKP+ + +
Sbjct: 395 EMNTRMINGKPLYVAL 410
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/96 (28%), Positives = 46/96 (47%)
Query: 1 MFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRS 60
+F Q + ++A + + +YI N + +E +K+LF + G + D S
Sbjct: 168 VFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES 227
Query: 61 GRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96
G+SKG V + R DA AV N +L+GK + +
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 110 (43.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 9 FPVQQAGRASAIE--TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGT 66
FP ++A + T T +++ N+ + +E +KELF E G + + D SG+SKG
Sbjct: 182 FPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGF 241
Query: 67 AEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96
V Y A AV + +DGK + +
Sbjct: 242 GFVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Score = 106 (42.4 bits), Expect = 0.00018, P = 0.00018
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G +YI NLD +++E +KE FS G + R + + G+ KG V +S +A AV
Sbjct: 301 GVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVD 359
Query: 83 RYNNVQLDGKPMKIEI 98
N + KP+ + +
Sbjct: 360 EMNGRIVGSKPLHVTL 375
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 110 (43.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 29/105 (27%), Positives = 58/105 (55%)
Query: 14 AGRASAIETGT----KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAE 68
A A+ ++ G+ +LY+ +L + ++ + ++ +F G ++ + D +GRSKG
Sbjct: 236 AAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGF 295
Query: 69 VVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAAN 113
+ +S A A+++ N +L G+PMK VG ++ RT A +A+
Sbjct: 296 ITFSDSECAKKALEQLNGFELAGRPMK---VG-HVTERTDASSAS 336
>UNIPROTKB|E2QWQ0 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 CTD:10179 KO:K13188 OMA:DRHYSRE
EMBL:AAEX03003476 EMBL:AAEX03003477 RefSeq:XP_853905.2
Ensembl:ENSCAFT00000021445 GeneID:611169 KEGG:cfa:611169
Uniprot:E2QWQ0
Length = 262
Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRAD 76
A+A E L++ NL+ V+ E + ELF + G + + I D+ G+ K A V +
Sbjct: 3 AAAEEADRTLFVGNLETKVTEELLFELFHQAGPVVKVKIPKDKDGKPKQFAFVNFKHEVS 62
Query: 77 AVAAVKRYNNVQLDGKPMKIE 97
A+ N ++L G+P+KI+
Sbjct: 63 VPYAMNLLNGIKLFGRPIKIQ 83
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 26/96 (27%), Positives = 47/96 (48%)
Query: 1 MFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRS 60
+F + + ++A + + T +YI N + +E +KE+F + G + D S
Sbjct: 168 VFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDS 227
Query: 61 GRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96
G+SKG V + R DA AV N +++GK + +
Sbjct: 228 GKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 263
>RGD|1308017 [details] [associations]
symbol:Rbm7 "RNA binding motif protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1308017 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 OMA:DRHYSRE IPI:IPI00215147
Ensembl:ENSRNOT00000007736 UCSC:RGD:1308017 ArrayExpress:F1M8F0
Uniprot:F1M8F0
Length = 265
Score = 109 (43.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRAD 76
A+A E L++ NL+ V+ E + ELF + G + + I D+ G+ K A V +
Sbjct: 3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVS 62
Query: 77 AVAAVKRYNNVQLDGKPMKIE 97
A+ N ++L G+P+KI+
Sbjct: 63 VPYAMNLLNGIKLFGRPIKIQ 83
>UNIPROTKB|G4N872 [details] [associations]
symbol:MGG_06296 "Nuclear cap-binding protein subunit 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CM001234
GO:GO:0000243 GO:GO:0000339 PANTHER:PTHR18847 GO:GO:0005846
KO:K12883 RefSeq:XP_003717292.1 ProteinModelPortal:G4N872
SMR:G4N872 EnsemblFungi:MGG_06296T0 GeneID:2684451
KEGG:mgr:MGG_06296 Uniprot:G4N872
Length = 185
Score = 107 (42.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRADAV 78
+ T LY+ NL + + E + ELFS+ G++KR + DR ++ G V Y DA+
Sbjct: 44 LANSTTLYVGNLSFYTTEEQVYELFSKCGEIKRLVMGLDRFNKTPCGFCFVEYYTHQDAI 103
Query: 79 AAVKRYNNVQLDGKPMKIEI 98
+K +LD + ++ ++
Sbjct: 104 DCMKYIGGTKLDERVIRTDL 123
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 111 (44.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 27/95 (28%), Positives = 52/95 (54%)
Query: 10 PVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEV 69
PVQ + KL+I L + E+++E+F++ G ++ S+ D+ G+S+G A V
Sbjct: 128 PVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFV 187
Query: 70 VYSRRADAVAAVKRYNNVQ-LDG--KPMKIEIVGT 101
++ R+ AV A K ++ Q ++G P+ ++ T
Sbjct: 188 TFTNRSCAVVATKEMHHSQTMEGCSAPLVVKFADT 222
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 110 (43.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 29/105 (27%), Positives = 58/105 (55%)
Query: 14 AGRASAIETGT----KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAE 68
A A+ ++ G+ +LY+ +L + ++ + ++ +F G ++ + D +GRSKG
Sbjct: 236 AAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGF 295
Query: 69 VVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAAN 113
+ +S A A+++ N +L G+PMK VG ++ RT A +A+
Sbjct: 296 ITFSDSECAKKALEQLNGFELAGRPMK---VG-HVTERTDASSAS 336
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 110 (43.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 29/105 (27%), Positives = 58/105 (55%)
Query: 14 AGRASAIETGT----KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAE 68
A A+ ++ G+ +LY+ +L + ++ + ++ +F G ++ + D +GRSKG
Sbjct: 236 AAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGF 295
Query: 69 VVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAAN 113
+ +S A A+++ N +L G+PMK VG ++ RT A +A+
Sbjct: 296 ITFSDSECAKKALEQLNGFELAGRPMK---VG-HVTERTDASSAS 336
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 110 (43.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 29/105 (27%), Positives = 58/105 (55%)
Query: 14 AGRASAIETGT----KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAE 68
A A+ ++ G+ +LY+ +L + ++ + ++ +F G ++ + D +GRSKG
Sbjct: 236 AAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGF 295
Query: 69 VVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAAN 113
+ +S A A+++ N +L G+PMK VG ++ RT A +A+
Sbjct: 296 ITFSDSECAKKALEQLNGFELAGRPMK---VG-HVTERTDASSAS 336
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 110 (43.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 29/105 (27%), Positives = 58/105 (55%)
Query: 14 AGRASAIETGT----KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAE 68
A A+ ++ G+ +LY+ +L + ++ + ++ +F G ++ + D +GRSKG
Sbjct: 236 AAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGF 295
Query: 69 VVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAAN 113
+ +S A A+++ N +L G+PMK VG ++ RT A +A+
Sbjct: 296 ITFSDSECAKKALEQLNGFELAGRPMK---VG-HVTERTDASSAS 336
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 110 (43.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 29/105 (27%), Positives = 58/105 (55%)
Query: 14 AGRASAIETGT----KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAE 68
A A+ ++ G+ +LY+ +L + ++ + ++ +F G ++ + D +GRSKG
Sbjct: 236 AAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGF 295
Query: 69 VVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAAN 113
+ +S A A+++ N +L G+PMK VG ++ RT A +A+
Sbjct: 296 ITFSDSECAKKALEQLNGFELAGRPMK---VG-HVTERTDASSAS 336
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 110 (43.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 29/105 (27%), Positives = 58/105 (55%)
Query: 14 AGRASAIETGT----KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAE 68
A A+ ++ G+ +LY+ +L + ++ + ++ +F G ++ + D +GRSKG
Sbjct: 236 AAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGF 295
Query: 69 VVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAAN 113
+ +S A A+++ N +L G+PMK VG ++ RT A +A+
Sbjct: 296 ITFSDSECAKKALEQLNGFELAGRPMK---VG-HVTERTDASSAS 336
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 110 (43.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 29/105 (27%), Positives = 58/105 (55%)
Query: 14 AGRASAIETGT----KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAE 68
A A+ ++ G+ +LY+ +L + ++ + ++ +F G ++ + D +GRSKG
Sbjct: 236 AAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGF 295
Query: 69 VVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAAN 113
+ +S A A+++ N +L G+PMK VG ++ RT A +A+
Sbjct: 296 ITFSDSECAKKALEQLNGFELAGRPMK---VG-HVTERTDASSAS 336
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 110 (43.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 29/105 (27%), Positives = 58/105 (55%)
Query: 14 AGRASAIETGT----KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAE 68
A A+ ++ G+ +LY+ +L + ++ + ++ +F G ++ + D +GRSKG
Sbjct: 236 AAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGF 295
Query: 69 VVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAAN 113
+ +S A A+++ N +L G+PMK VG ++ RT A +A+
Sbjct: 296 ITFSDSECAKKALEQLNGFELAGRPMK---VG-HVTERTDASSAS 336
>FB|FBgn0037602 [details] [associations]
symbol:CG8021 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046331 "lateral inhibition" evidence=IMP]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0046331 HSSP:Q14103
GeneTree:ENSGT00390000008624 EMBL:BT031072 EMBL:BT032713
RefSeq:NP_649808.1 UniGene:Dm.36782 SMR:Q9VHP3
EnsemblMetazoa:FBtr0081878 GeneID:41021 KEGG:dme:Dmel_CG8021
UCSC:CG8021-RA FlyBase:FBgn0037602 InParanoid:Q9VHP3 OMA:HVANAEV
OrthoDB:EOG4M0CJB GenomeRNAi:41021 NextBio:821758 Uniprot:Q9VHP3
Length = 91
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 22/79 (27%), Positives = 44/79 (55%)
Query: 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRS-GRSKGTAEVVYSRRADAV 78
+ + KL++ NL + + +++++ FS+ G + + +DR G SK VV+S+R DA
Sbjct: 6 VRSSYKLFVGNLPWTIGSKELRTYFSKYGHVANAEVVFDRQLGLSKHYGFVVFSQR-DAF 64
Query: 79 AAVKRYNNVQLDGKPMKIE 97
+ N LDG+ + ++
Sbjct: 65 NSASNQNTHFLDGRVLTVQ 83
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVVYSRRADAVA 79
+ ++Y+ NL Y V D+ + FS G ++ I + R+GRSKG A V Y AV
Sbjct: 41 DNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVK 100
Query: 80 AVKRYNNVQLDGKPMKIEI 98
A+ + L G+ + + I
Sbjct: 101 ALDAHGK-DLQGRSLVVRI 118
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVVYSRRADAVA 79
+ ++Y+ NL Y V D+ + FS G ++ I + R+GRSKG A V Y AV
Sbjct: 41 DNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVK 100
Query: 80 AVKRYNNVQLDGKPMKIEI 98
A+ + L G+ + + I
Sbjct: 101 ALDAHGK-DLQGRSLVVRI 118
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 111 (44.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVY 71
Q A+ G+ LY+ NLD V+++ ++E F+ G + + D SG S+G+ V +
Sbjct: 315 QSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAF 374
Query: 72 SRRADAVAAVKRYNNVQLDGKPMKIEI 98
S +A A+ N + KP+ + +
Sbjct: 375 STPEEATRAITEMNGKMIVTKPLYVAL 401
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 109 (43.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 25/86 (29%), Positives = 45/86 (52%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRY 84
KL++ NL + +S DI ELF + G + I + G+++G A V + +A AA+ ++
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 85 NNVQLDGKPMKIEIVGTNIATRTAAP 110
+ Q+ G+ I+ + A R P
Sbjct: 156 DTFQVSGR-----IISVSFARRFKKP 176
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 111 (44.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 12 QQAGRASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVV 70
QQ + E +K L ++NL Y S E ++ELF + +K + + GR KG A V
Sbjct: 446 QQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIK---MPQNNQGRPKGYAFVE 502
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIE 97
+ DA A+ NN +++G+ +++E
Sbjct: 503 FPTAEDAKEALNSCNNTEIEGRAIRLE 529
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 111 (44.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 12 QQAGRASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVV 70
QQ + E +K L ++NL Y S E ++ELF + +K + + GR KG A V
Sbjct: 448 QQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIK---MPQNNQGRPKGYAFVE 504
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIE 97
+ DA A+ NN +++G+ +++E
Sbjct: 505 FPTAEDAKEALNSCNNTEIEGRAIRLE 531
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 113 (44.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 22/87 (25%), Positives = 47/87 (54%)
Query: 10 PVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEV 69
P+ S + +++Y+ +L + ++ + I+ FS G++K ++ D SG+SKG A +
Sbjct: 574 PIPPTLNQSTSQDQSRIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDASGKSKGYAFI 633
Query: 70 VYSRRADAVAAVKRYNNVQLDGKPMKI 96
Y + A A++ N + G+ +K+
Sbjct: 634 EYDNQESAAKALQSMTNYVMCGRAIKV 660
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 111 (44.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 12 QQAGRASAIETGTK-LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVV 70
QQ + E +K L ++NL Y S E ++ELF + +K + + GR KG A V
Sbjct: 448 QQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIK---MPQNNQGRPKGYAFVE 504
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIE 97
+ DA A+ NN +++G+ +++E
Sbjct: 505 FPTAEDAKEALNSCNNTEIEGRAIRLE 531
>FB|FBgn0263829 [details] [associations]
symbol:CG34334 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:AE014298
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336
KO:K14325 EMBL:BT028873 RefSeq:NP_001097042.1 UniGene:Dm.33105
UniGene:Dm.35916 SMR:Q0IGP7 EnsemblMetazoa:FBtr0112536
GeneID:5740122 KEGG:dme:Dmel_CG34334 UCSC:CG34334-RA
FlyBase:FBgn0263829 InParanoid:Q0IGP7 OrthoDB:EOG4C5B22
GenomeRNAi:5740122 NextBio:20891162 Uniprot:Q0IGP7
Length = 708
Score = 111 (44.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 28/74 (37%), Positives = 39/74 (52%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRS-KGTAEVVYSRRADAVAAVK 82
+L+I L V+ E I E+F G L DR GR +G A V YSR D +A+K
Sbjct: 536 RLHIKGLTRQVTKEHITEIFGHFGALTAVDFPMDRFQGRQGRGYAFVEYSRPEDCASAIK 595
Query: 83 RYNNVQLDGKPMKI 96
N Q+DGK +++
Sbjct: 596 HMNGGQIDGKLIRV 609
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 112 (44.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 27/105 (25%), Positives = 55/105 (52%)
Query: 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVA 79
I+ ++L I NL + +D+K++FSE G + I G+ +G A V++ R +A
Sbjct: 232 IKLKSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGK 291
Query: 80 AVKRYNNVQLDGKPMKIE-IVGTN--IATRTAAPAANVNFGNSNG 121
A+ N ++ + + ++ + + +AT++A+ A N+ N G
Sbjct: 292 ALTAMNGKKIKDRQVAVDWAIAKDKYLATQSASAAGNIKEENVTG 336
>UNIPROTKB|Q6DES0 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:CR761328 EMBL:BC077024 RefSeq:NP_001006879.1 UniGene:Str.170
ProteinModelPortal:Q6DES0 SMR:Q6DES0 STRING:Q6DES0 PRIDE:Q6DES0
GeneID:448671 KEGG:xtr:448671 Xenbase:XB-GENE-1005786
InParanoid:Q6DES0 Bgee:Q6DES0 Uniprot:Q6DES0
Length = 153
Score = 104 (41.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRADAVAAVKRY 84
LY+ NL + + E I ELFS+ GD+K+ + D+ ++ G V Y R DA A++
Sbjct: 39 LYVGNLSFYTTEEQIHELFSKSGDVKKIVMGLDKIKKTACGFCFVEYYTRTDAEQAMRFI 98
Query: 85 NNVQLDGKPMKIE 97
N +LD + ++ +
Sbjct: 99 NGTRLDDRIIRTD 111
>WB|WBGene00004390 [details] [associations]
symbol:rnp-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035
GO:GO:0007281 eggNOG:COG0724 HSSP:P09651 EMBL:FO080149
HOGENOM:HOG000236289 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 PIR:G88499 RefSeq:NP_498565.2
ProteinModelPortal:Q09584 SMR:Q09584 DIP:DIP-25425N IntAct:Q09584
MINT:MINT-229501 STRING:Q09584 PaxDb:Q09584
EnsemblMetazoa:K04G7.10.1 EnsemblMetazoa:K04G7.10.2 GeneID:176002
KEGG:cel:CELE_K04G7.10 UCSC:K04G7.10 CTD:176002 WormBase:K04G7.10
InParanoid:Q09584 OMA:THLLPPN NextBio:890690 Uniprot:Q09584
Length = 332
Score = 109 (43.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 18/72 (25%), Positives = 43/72 (59%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
L++ ++Y S ++ F G +K+ ++ +D +G+ +G A + YS +A+ A K+ +
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKAD 165
Query: 86 NVQLDGKPMKIE 97
+++DGK + ++
Sbjct: 166 GIKVDGKRLVVD 177
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N +++E +KE+F + G + D +G+SKG V + R DA AV
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDE 250
Query: 84 YNNVQLDGKPM 94
N ++GK M
Sbjct: 251 MNGKDMNGKSM 261
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 25/92 (27%), Positives = 46/92 (50%)
Query: 1 MFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRS 60
+F + + ++A + + T +YI N + ++ +KELF + G + D +
Sbjct: 169 VFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPT 228
Query: 61 GRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92
G+S+G V Y + DA AV+ N +L+GK
Sbjct: 229 GKSRGFGFVSYEKHEDANKAVEEMNGTELNGK 260
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 110 (43.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 27/76 (35%), Positives = 37/76 (48%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G L+I NL V +E +K FS G + I D G+SKG V Y+ +A AV
Sbjct: 363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVT 422
Query: 83 RYNNVQLDGKPMKIEI 98
N L GKP+ + +
Sbjct: 423 EMNQRMLAGKPLYVAL 438
>UNIPROTKB|A2SW84 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:119488 "Siniperca chuatsi" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847
GO:GO:0046833 GO:GO:0006408 EMBL:DQ359156 ProteinModelPortal:A2SW84
SMR:A2SW84 Uniprot:A2SW84
Length = 165
Score = 105 (42.0 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRADAVAAVKRY 84
LY+ NL + + E + ELFS+ GD+KR I D+ ++ G V Y RA A A++
Sbjct: 41 LYVGNLSFYTTEEQVHELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRAGAENAMRFI 100
Query: 85 NNVQLDGKPMKIE 97
N +LD + ++ +
Sbjct: 101 NGTRLDDRIIRAD 113
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 109 (43.4 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 23/78 (29%), Positives = 47/78 (60%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVK 82
T LY++NL ++++ + +F + G + + +I D+ +GR +G A V Y++R +A A+
Sbjct: 211 TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 270
Query: 83 RYNNVQLDG--KPMKIEI 98
NNV +G +P+ + +
Sbjct: 271 ALNNVIPEGGSQPLSVRL 288
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 102 (41.0 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 7 SAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKG 65
S F Q+ G AS KL+I L + + + + E FS+ G + I DR S RSKG
Sbjct: 23 SCFFTQRRGVAS------KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKG 76
Query: 66 TAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97
V ++ +A A+ +N QL+G+ + ++
Sbjct: 77 FGFVTFASADEAQKALMEFNGQQLNGRTIFVD 108
>WB|WBGene00004387 [details] [associations]
symbol:rnp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0009790 "embryo development" evidence=IMP] [GO:0001703
"gastrulation with mouth forming first" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003723 GO:GO:0006396 GO:GO:0040035 GO:GO:0040022 HSSP:Q9V535
eggNOG:COG0724 GeneTree:ENSGT00550000074641 GO:GO:0001703
EMBL:Z32683 HOGENOM:HOG000183826 KO:K12876 PIR:F88427
RefSeq:NP_497891.1 ProteinModelPortal:Q21832 SMR:Q21832
DIP:DIP-26500N IntAct:Q21832 MINT:MINT-1100537 STRING:Q21832
PaxDb:Q21832 EnsemblMetazoa:R07E5.14.1 EnsemblMetazoa:R07E5.14.2
EnsemblMetazoa:R07E5.14.3 GeneID:175572 KEGG:cel:CELE_R07E5.14
UCSC:R07E5.14.2 CTD:175572 WormBase:R07E5.14 InParanoid:Q21832
OMA:NIHEEAT NextBio:888726 Uniprot:Q21832
Length = 142
Score = 101 (40.6 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 22/76 (28%), Positives = 44/76 (57%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAV 81
G ++++N+ + +D+ + FSE G +K ++ DR +G KG A V Y + +A A+
Sbjct: 54 GWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAI 113
Query: 82 KRYNNVQLDGKPMKIE 97
+ N+ L G+ +K++
Sbjct: 114 DQSNDTDLLGQNVKVD 129
WARNING: HSPs involving 138 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.127 0.342 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 184 150 0.00087 104 3 11 23 0.41 32
30 0.39 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 388
No. of states in DFA: 505 (54 KB)
Total size of DFA: 106 KB (2074 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.68u 0.10s 12.78t Elapsed: 00:00:01
Total cpu time: 12.70u 0.10s 12.80t Elapsed: 00:00:01
Start: Fri May 10 05:06:01 2013 End: Fri May 10 05:06:02 2013
WARNINGS ISSUED: 2