BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030010
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28FB9|THOC4_XENTR THO complex subunit 4 OS=Xenopus tropicalis GN=alyref PE=2 SV=1
Length = 260
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 103/168 (61%), Gaps = 23/168 (13%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74
G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+
Sbjct: 100 GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 159
Query: 75 ADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGGQGRGGAFR 134
ADA+ A+K+YN V LDG+PM I++V + I + P Q RGG
Sbjct: 160 ADALKAMKQYNGVPLDGRPMNIQLVTSQIEAQRR--------------PIQSQSRGGGIT 205
Query: 135 RLRGGGGG---------GGRGFGRGRGRGRERNEKISAEDLDADLDKY 173
R RGG G G GRGRG GR +++SAE+LDA LD Y
Sbjct: 206 RPRGGAIGFSGANRRGGRGGNRGRGRGAGRNPKQQLSAEELDAQLDAY 253
>sp|Q58EA2|THO4A_XENLA THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1
Length = 256
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 103/167 (61%), Gaps = 22/167 (13%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74
G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+
Sbjct: 97 GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 156
Query: 75 ADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGGQGRGGAFR 134
ADA+ A+K+YN V LDG+PM I++V + I + P Q RGG
Sbjct: 157 ADALKAMKQYNGVPLDGRPMNIQLVTSQIEAQRR--------------PIQSQSRGGGVT 202
Query: 135 RLRGGGGG--------GGRGFGRGRGRGRERNEKISAEDLDADLDKY 173
R RGG G G GRGRG GR +++SAE+LDA LD Y
Sbjct: 203 RPRGGTLGFASGNRRGRGGNRGRGRGAGRNPKQQLSAEELDAQLDAY 249
>sp|B5FXN8|THOC4_TAEGU THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1
Length = 254
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 105/163 (64%), Gaps = 13/163 (7%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74
G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+
Sbjct: 94 GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 153
Query: 75 ADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGGQGRGGAFR 134
ADA+ A+K+YN V LDG+PM I++V + I T+ PA +VN RGG R
Sbjct: 154 ADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQR-RPAQSVN--------RGGMTRNRGVL 204
Query: 135 RLRGGGGGGGRGFGRGRGRGRER----NEKISAEDLDADLDKY 173
GGGG G RGRGR +++SAE+LDA LD Y
Sbjct: 205 GGFGGGGNRRGTRGGNRGRGRGAGRTSKQQLSAEELDAQLDAY 247
>sp|Q3T0I4|THOC4_BOVIN THO complex subunit 4 OS=Bos taurus GN=ALYREF PE=2 SV=1
Length = 257
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 99/153 (64%), Gaps = 13/153 (8%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRY 84
KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+Y
Sbjct: 107 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 166
Query: 85 NNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGGQGRG----GAFRRLRGGG 140
N V LDG+PM I++V + I T+ PA +VN RGG R G
Sbjct: 167 NGVPLDGRPMNIQLVTSQIDTQR-RPAQSVN--------RGGMTRNRGSGGFGGGGGTRR 217
Query: 141 GGGGRGFGRGRGRGRERNEKISAEDLDADLDKY 173
G G GRGRG GR +++SAE+LDA LD Y
Sbjct: 218 GTRGGSRGRGRGTGRSSKQQLSAEELDAQLDAY 250
>sp|Q6GLW1|THO4B_XENLA THO complex subunit 4-B OS=Xenopus laevis GN=alyref-b PE=2 SV=1
Length = 256
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 96/168 (57%), Gaps = 23/168 (13%)
Query: 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74
G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+
Sbjct: 96 GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERK 155
Query: 75 ADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGGQGRGGAFR 134
ADA+ A+K+YN V LDG+ M I++V + I + P Q RGG
Sbjct: 156 ADALKAMKQYNGVPLDGRSMNIQLVTSQIEAQRR--------------PIQSQSRGGGVA 201
Query: 135 RLRGGGGGGGRGFGRGRGRGRER---------NEKISAEDLDADLDKY 173
R RGG G G R +++SAE+LDA LD Y
Sbjct: 202 RPRGGAIGFAAGGNRRDRGANRGRGRGAGRNPKQQLSAEELDAQLDAY 249
>sp|O08583|THOC4_MOUSE THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3
Length = 255
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 73/93 (78%), Gaps = 1/93 (1%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRY 84
KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+Y
Sbjct: 106 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 165
Query: 85 NNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
N V LDG+PM I++V + I T+ PA ++N G
Sbjct: 166 NGVPLDGRPMNIQLVTSQIDTQR-RPAQSINRG 197
>sp|Q86V81|THOC4_HUMAN THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3
Length = 257
Score = 110 bits (276), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 98/153 (64%), Gaps = 13/153 (8%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRY 84
KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+Y
Sbjct: 107 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 166
Query: 85 NNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGGQGRGGAFRRLRGGGGGGG 144
N V LDG+PM I++V + I + PA +VN RGG R GGGG
Sbjct: 167 NGVPLDGRPMNIQLVTSQIDAQR-RPAQSVN--------RGGMTRNRGAGGFGGGGGTRR 217
Query: 145 RGFGRGRGRGRER----NEKISAEDLDADLDKY 173
G RGRGR +++SAE+LDA LD Y
Sbjct: 218 GTRGGARGRGRGAGRNSKQQLSAEELDAQLDAY 250
>sp|Q9JJW6|REFP2_MOUSE RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2
PE=1 SV=1
Length = 218
Score = 110 bits (275), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 67/84 (79%)
Query: 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVA 79
+ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTA+V + RRADA+
Sbjct: 71 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALK 130
Query: 80 AVKRYNNVQLDGKPMKIEIVGTNI 103
A+K+Y V LDG+PM I++V + I
Sbjct: 131 AMKQYKGVPLDGRPMDIQLVASQI 154
>sp|Q9BY77|PDIP3_HUMAN Polymerase delta-interacting protein 3 OS=Homo sapiens GN=POLDIP3
PE=1 SV=2
Length = 421
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 6/76 (7%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
GTK+ ++NL V+ EDI ELF G LKR + + G AEVV+ ++ DA+ A K
Sbjct: 279 GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH------PGVAEVVFVKKDDAITAYK 332
Query: 83 RYNNVQLDGKPMKIEI 98
+YNN LDG+PMK +
Sbjct: 333 KYNNRCLDGQPMKCNL 348
>sp|Q8BG81|PDIP3_MOUSE Polymerase delta-interacting protein 3 OS=Mus musculus GN=Poldip3
PE=2 SV=1
Length = 420
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 7/81 (8%)
Query: 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADA 77
S +E GTK+ ++NL V+ EDI ELF G LKR + + G AEVV+ ++ DA
Sbjct: 275 SPLE-GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH------PGVAEVVFVKKDDA 327
Query: 78 VAAVKRYNNVQLDGKPMKIEI 98
+ A K+YNN LDG+PMK +
Sbjct: 328 ITAYKKYNNRCLDGQPMKCNL 348
>sp|Q09330|MLO3_SCHPO mRNA export protein mlo3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mlo3 PE=1 SV=1
Length = 199
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 28/165 (16%)
Query: 18 SAIETGTKLYISNLDYGVSNEDIKELF-SEVGDLKRYSIHYDRSGRSKGTAEVVYSRRAD 76
S I +K+ +SNL V+ +KELF +G KR S+ Y +GRSKG A +++SR D
Sbjct: 49 SVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGD 108
Query: 77 AVAAVKRYNNVQLDG-KPMKIEIV------GTNIATRTAAPAANVNFGNSNGVPRGGQGR 129
A A ++Y +DG + MK+EI+ ++A R +PA+N + S
Sbjct: 109 ATRAYEQYEGRLVDGTRKMKVEIILDPSRQLNSLAARV-SPASNASATASK--------- 158
Query: 130 GGAFRRLRGGGGGGGRGFGRGRGRGRERNEKISAEDLDADLDKYY 174
G R R K SAE+LD ++D Y+
Sbjct: 159 ----------NGAKSSKRKTTRRRRTPNRPKKSAEELDKEMDDYF 193
>sp|Q8C854|MYEF2_MOUSE Myelin expression factor 2 OS=Mus musculus GN=Myef2 PE=1 SV=1
Length = 591
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLD+ V + +KE+FS G +KR I D+ G+S+G V +
Sbjct: 218 QAGR-----LGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFE 272
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 273 QAIEAVQAISMFNGQFLFDRPMHVKM 298
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 25 KLYISNLDYGVSNEDIKELFSE-VGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
+++ISN+ Y + + IK+L E VG++ + D G+S+G V + A++
Sbjct: 92 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALET 151
Query: 84 YNNVQLDGKPMKIE 97
N L G+P+ I+
Sbjct: 152 MNKYDLSGRPLNIK 165
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G ++++ NL + ++ + +KE FS+ G + I + +G+SKG V + A A +
Sbjct: 513 GNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESAESAEKACR 571
Query: 83 RYNNVQLDGKPMKIEI 98
N +++ G+ + + +
Sbjct: 572 IMNGIKISGREIDVRL 587
>sp|Q62826|HNRPM_RAT Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus
GN=Hnrnpm PE=1 SV=4
Length = 690
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Query: 11 VQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVV 70
+Q+AGR G+ ++++NLDY V + +KE+FS G + R I D+ G+S+G V
Sbjct: 156 MQKAGR-----LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVT 210
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEI 98
+ + +AV A+ +N L +PM +++
Sbjct: 211 FEQSIEAVQAISMFNGQLLFDRPMHVKM 238
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 27 YISNLDYGVSNEDIKELFSE-VGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
+I+N+ + V + +K+L E VG++ + D G+S+G A V + A + N
Sbjct: 73 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 132
Query: 86 NVQLDGKPMKIE 97
L G+P+K++
Sbjct: 133 KHSLSGRPLKVK 144
>sp|Q9P2K5|MYEF2_HUMAN Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3
Length = 600
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLD+ V + +KE+FS G +KR I D+ G+S+G V +
Sbjct: 227 QAGR-----LGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFE 281
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 282 QAIEAVQAISMFNGQFLFDRPMHVKM 307
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 25 KLYISNLDYGVSNEDIKELFSE-VGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
+++ISN+ Y + + IK+L E VG++ + D G+S+G V + A++
Sbjct: 101 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALET 160
Query: 84 YNNVQLDGKPMKIE 97
N L G+P+ I+
Sbjct: 161 MNKYDLSGRPLNIK 174
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G ++++ NL + ++ + +KE FS+ G + I + +G+SKG V + A A +
Sbjct: 522 GNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACR 580
Query: 83 RYNNVQLDGKPMKIEI 98
N +++ G+ + + +
Sbjct: 581 IMNGIKISGREIDVRL 596
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADA 77
++++ ++Y+ NL +GV + +KELFSE G++ + YDR SGRS+G V YS +
Sbjct: 202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEV 261
Query: 78 VAAVKRYNNVQLDGKPMKI 96
A+ N V LDG+ +++
Sbjct: 262 NDAIDSLNGVDLDGRSIRV 280
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 18/129 (13%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKR 83
KL++ NL + V + + LF G+++ + YD+ +GRS+G V S + + AA ++
Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147
Query: 84 YNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGGQGRGGAFRRLRGGGGGG 143
+N ++DG+ +++ A A N +FG GG+G ++ GGG G
Sbjct: 148 FNGYEIDGRAIRVN------AGPAPAKRENSSFG-------GGRGGNSSY----GGGRDG 190
Query: 144 GRGFGRGRG 152
FG RG
Sbjct: 191 NSSFGGARG 199
>sp|P52272|HNRPM_HUMAN Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM
PE=1 SV=3
Length = 730
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLDY V + +KE+FS G + R I D+ G+S+G V +
Sbjct: 198 QAGR-----LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFE 252
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 253 QSIEAVQAISMFNGQLLFDRPMHVKM 278
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 27 YISNLDYGVSNEDIKELFSE-VGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
+I+N+ + V + +K+L E VG++ + D G+S+G A V + A + N
Sbjct: 74 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 133
Query: 86 NVQLDGKPMKIE 97
L G+P+K++
Sbjct: 134 KHSLSGRPLKVK 145
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADA 77
++++ ++Y+ NL +GV + +KELFSE G++ + YDR SGRS+G V YS +
Sbjct: 203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEV 262
Query: 78 VAAVKRYNNVQLDGKPMKI 96
A+ N + LDG+ +++
Sbjct: 263 NDAIDSLNGIDLDGRSIRV 281
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 18/129 (13%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKR 83
KL++ NL + V + + LF G+++ + YD+ SGRS+G V S + + AA ++
Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148
Query: 84 YNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGGQGRGGAFRRLRGGGGGG 143
+N ++DG+ +++ A A N +FG GG+G ++ GGG G
Sbjct: 149 FNGYEIDGRAIRVN------AGPAPAKRENSSFG-------GGRGGNSSY----GGGRDG 191
Query: 144 GRGFGRGRG 152
FG RG
Sbjct: 192 NSSFGGARG 200
>sp|Q9D0E1|HNRPM_MOUSE Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus GN=Hnrnpm
PE=1 SV=3
Length = 729
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 13 QAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72
QAGR G+ ++++NLDY V + +KE+FS G + R I D+ G+S+G V +
Sbjct: 197 QAGR-----LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFE 251
Query: 73 RRADAVAAVKRYNNVQLDGKPMKIEI 98
+ +AV A+ +N L +PM +++
Sbjct: 252 QSIEAVQAISMFNGQLLFDRPMHVKM 277
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 27 YISNLDYGVSNEDIKELFSE-VGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
+I+N+ + V + +K+L E VG++ + D G+S+G A V + A + N
Sbjct: 73 FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 132
Query: 86 NVQLDGKPMKIE 97
L G+P+K++
Sbjct: 133 KHSLSGRPLKVK 144
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +Y+ N+D V++ED +ELF + GD+ SI D G+S+G V Y R A AV
Sbjct: 229 TNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDH 288
Query: 84 YNNVQLDGKPMKI 96
N+++ G+ + +
Sbjct: 289 LNDIEFKGQKLYV 301
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 10 PVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAE 68
P A + LY+ LD V+ + ELFS +G + + D + RS G A
Sbjct: 34 PTPTTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAY 93
Query: 69 VVYSRRADAVAAVKRYNNVQLDGKPMKI 96
V Y+ D A++ N + GKP +I
Sbjct: 94 VNYNSSEDGEKALEELNYTVIKGKPCRI 121
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
++I NLD+ + N+ + + F+ G++ + D G SKG V Y A A+K N
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVN 197
Query: 86 NVQLDGKPMKIEIVGTNIATR 106
+ L+ K + VG +I +
Sbjct: 198 GMLLNEKKV---FVGHHIPKK 215
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G+ LY+ NLD V++E +KE+FSE G++ + + G S+G V YS +A+ A+K
Sbjct: 341 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMK 400
Query: 83 RYNNVQLDGKPMKIEI 98
N + KP+ + +
Sbjct: 401 EMNGKMIGRKPLYVAL 416
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAA 80
+ LY+ +LD V+ + +LF++V + + D + RS G A V ++ DA A
Sbjct: 56 HPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRA 115
Query: 81 VKRYNNVQLDGKPMKIEIVGTNIATRTA 108
++ N + +P++I + + +TR +
Sbjct: 116 MESLNYAPIRDRPIRIMLSNRDPSTRLS 143
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
++I NLD + N+ + E FS G + + D GRSKG V + + A AA+ + N
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 207
Query: 86 NVQLDGK 92
+ L+ K
Sbjct: 208 GMLLNDK 214
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%)
Query: 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAV 78
A+ + T +Y+ NL ++++++K+ F + GD+ + D+SG S+ V + A
Sbjct: 234 AVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAA 293
Query: 79 AAVKRYNNVQL 89
AV++ N + L
Sbjct: 294 VAVEKMNGISL 304
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKR 83
KL++ NL + V + + +LF G+++ + YD+ +GRS+G V S ++ AA ++
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 84 YNNVQLDGKPMKI 96
+N +LDG+P+++
Sbjct: 152 FNGYELDGRPLRV 164
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKR 83
++Y+ NL +GV + ++ LFSE G + + YDR SGRSKG V Y + A+K
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 84 YNNVQLDGKPMKI 96
+ LDG+ +++
Sbjct: 265 LDGADLDGRQIRV 277
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAA 80
E +L++ NL Y V +D+K+LF + G + R I ++ GRS+G VV S +A+ A
Sbjct: 176 EPDRQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHA 235
Query: 81 VKRYNNVQLDGKPMKIEI 98
++ +N G+ +++ +
Sbjct: 236 IQMLHNTDFMGRTLEVRL 253
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 45/71 (63%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
+Y+ NL + S+ ++ +LF+++G + R I Y+ +GRSKG V + DA +++++ N
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 371
Query: 86 NVQLDGKPMKI 96
+ G+P+++
Sbjct: 372 GYRYGGRPLQL 382
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRY 84
++Y+ NL Y V ++KE +VG++ I +G SKG A + YS +A A+K
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 85 NNVQLDGKPMKI 96
+N + G+ + I
Sbjct: 138 SNQKFMGRLVYI 149
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
+ LY+ NLD +S+E +KE+FS G + + D +G SKG+ V ++ +A A+ +
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQ 377
Query: 84 YNNVQLDGKPMKIEI 98
+ ++ KP+ + I
Sbjct: 378 LSGKMIESKPLYVAI 392
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 14 AGRASAIETG-TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVY 71
+G A+A + G T LY+ +LD+ V++ + + F ++G + + D + RS G V +
Sbjct: 25 SGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNF 84
Query: 72 SRRADAVAAVKRYNNVQLDGKPMKI 96
+ DA A++ N + L GKP+++
Sbjct: 85 TNPQDAARAIQELNYIPLYGKPIRV 109
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
++I NLD + ++ + + FS G++ + D SG+SKG V Y+ A A+++ N
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 86 NVQLDGK 92
+ L+ K
Sbjct: 186 GMLLNDK 192
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +Y+ NL +++D+K F E G + + D G+SKG V + DA AV+
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 84 YNNVQLDGK 92
N + D K
Sbjct: 275 LNGHKFDDK 283
>sp|P25555|GBP2_YEAST Single-strand telomeric DNA-binding protein GBP2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GBP2 PE=1
SV=1
Length = 427
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 47/77 (61%)
Query: 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVA 79
I+ G +++I NL Y ++ + +K++F E G + R + D +G S+G V+Y + +
Sbjct: 215 IDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIR 274
Query: 80 AVKRYNNVQLDGKPMKI 96
A+ +N ++++G+ +++
Sbjct: 275 AIDTFNGMEVEGRVLEV 291
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
+Y SNL + + D+ +LF +G + + +G+ G A V Y DA +++ N
Sbjct: 351 IYCSNLPFSTARSDLFDLFGPIGKINNAELKPQENGQPTGVAVVEYENLVDADFCIQKLN 410
Query: 86 NVQLDGKPMKI 96
N G ++I
Sbjct: 411 NYNYGGCSLQI 421
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
+++ NL + + ED+KELF VG++ I + G +G V +++ A+ +++
Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNESVQDAISKFD 182
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVA 79
I + +Y+ N++ V+ E++++ FS+ G + + D G+SKG V +S +A+
Sbjct: 300 IAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAID 359
Query: 80 AVKRYNNVQLDGKPMKIEI--------------VGTNIATRTAAPAANVNFG 117
AVK ++ GKP+ + I G + R ++ +A+VN G
Sbjct: 360 AVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPG 411
Score = 36.6 bits (83), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%)
Query: 11 VQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVV 70
+++ R E T LY+ NLD VS + ++E F+E G + +I D + +G A V
Sbjct: 188 MKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVN 247
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKI 96
+ DA A + N + K + +
Sbjct: 248 FDNPEDARRAAETVNGTKFGSKCLYV 273
>sp|Q7SG09|MRD1_NEUCR Multiple RNA-binding domain-containing protein 1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=mrd-1 PE=3 SV=1
Length = 827
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADA 77
S IE ++L++ NL Y V+ +D++E F++ G L + D G SKG A + Y + A A
Sbjct: 302 SLIEKTSRLFLRNLSYTVTEDDVREHFAKFGILVEVHVPLDSKGHSKGFAMIRYEKPASA 361
Query: 78 VAAVK 82
+AA +
Sbjct: 362 LAAFQ 366
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
GTKL + NL + V+ ++++ LFS G L I + S+G A +S +A+ A
Sbjct: 703 GTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNAFN 762
Query: 83 RYNNVQLDGKPMKIEI 98
+ + G+ + I+
Sbjct: 763 SLKDTHILGRRLVIDF 778
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G LY+ NLD V +E +KE+FSE G++ + + G S+G V YS +A+ A+
Sbjct: 331 GANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALS 390
Query: 83 RYNNVQLDGKPMKIEI 98
N + KP+ I +
Sbjct: 391 EMNGKMIGRKPLYIAL 406
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
++I NLD + N+ + E FS G + + D +GRSKG V + + A AA+ + N
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 86 NVQLDGK 92
+ ++ K
Sbjct: 198 GMLMNDK 204
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRAD 76
A + LY +LD V+ + +LF V ++ + D++ RS G A + +S D
Sbjct: 42 ADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPND 101
Query: 77 AVAAVKRYNNVQLDGKPMKIEIVGTNIATRTA 108
A A++ N L +P++I + + +TR +
Sbjct: 102 AYRAMEALNYTPLFDRPIRIMLSNRDPSTRLS 133
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 34/66 (51%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +Y+ NL + +++++ F + G + + D+SG S+ V + A +AV++
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 84 YNNVQL 89
N + L
Sbjct: 289 MNGISL 294
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRS-GRSKGTAEVVYSRRADAV 78
+++ KLY++NL + ++++ +++ F++ + YDRS GRS+G + +S
Sbjct: 213 VDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMN 272
Query: 79 AAVKRYNNVQLDGKPMKIEIVG 100
+A+ N V+L+G+P+++ + G
Sbjct: 273 SALDTMNEVELEGRPLRLNVAG 294
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAV 81
G +LY+ NL + +++ + E+F+E G + I YDR + RS+G A V +A A+
Sbjct: 113 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 172
Query: 82 KRYNNVQLDGKPMKI 96
+ ++ Q+ G+ +K+
Sbjct: 173 RLFDGSQVGGRTVKV 187
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI NLD +S E+ +++F + G++ ++ D+ G+S+G V YS A AAV
Sbjct: 229 TNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDE 288
Query: 84 YNNVQLDGKPMKI 96
N+ ++ G+ + +
Sbjct: 289 MNDKEVKGQKLYV 301
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
LY+ LD V+ + ELFS +G + + D + RS G A V Y+ AD A++
Sbjct: 50 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 109
Query: 85 NNVQLDGKPMKI 96
N + GKP +I
Sbjct: 110 NYTLIKGKPCRI 121
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
++I NLD + N+ + + F+ G++ + D G SKG V Y A A+K N
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN 197
Query: 86 NVQLDGKPMKIEIVGTNIATR 106
+ L+ K + VG +I+ +
Sbjct: 198 GMLLNDKKV---FVGHHISKK 215
>sp|B5G279|NCBP2_TAEGU Nuclear cap-binding protein subunit 2 OS=Taeniopygia guttata
GN=NCBP2 PE=2 SV=1
Length = 168
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRADA 77
+++ + LY+ NL + + E I+ELFS+ GD+KR + D+ ++ G V Y RADA
Sbjct: 38 SLKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADA 97
Query: 78 VAAVKRYNNVQLDGKPMKIE 97
A++ N +LD + ++ +
Sbjct: 98 EHAMRFINGTRLDDRIIRTD 117
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T LY+ N++ ++E +ELF++ G + S+ D G+ KG V Y + DAV AV+
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 84 YNNVQLDGKPMKI 96
N+ +L+G+ + +
Sbjct: 279 LNDSELNGEKLYV 291
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G L++ NLD V +E ++E F+ G + + +G+SKG V +S +A A+
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAIT 380
Query: 83 RYNNVQLDGKPMKIEI 98
N + GKP+ + I
Sbjct: 381 EKNQQIVAGKPLYVAI 396
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
++I NL + N+ + + FS GD+ I D +G+SKG V + A A+ N
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 86 NVQLDGKPMKI 96
+ L+G+ + +
Sbjct: 188 GMLLNGQEIYV 198
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G L++ NLD + +E ++E F G + + D +G+SKG V +S +A A+
Sbjct: 350 GVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAIT 409
Query: 83 RYNNVQLDGKPMKIEI 98
N ++GKP+ + +
Sbjct: 410 EMNQRMVNGKPLYVAL 425
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +Y+ N+D + ++ +ELF+ G + + D G+SKG V + A AV+
Sbjct: 248 TNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEE 307
Query: 84 YNNVQLDGKPMKI 96
N+ +++G+ + +
Sbjct: 308 LNDKEINGQKIYV 320
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 6 VSAFPVQQAGRASAI-ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRS 63
V A ++ G +S I E LY+ L+ V+ + E+FS +G + + D S +S
Sbjct: 48 VPADSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKS 107
Query: 64 KGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96
G A V Y + D A++ N ++G+P +I
Sbjct: 108 LGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRI 140
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
++I NL + N+ + + FS G + + D G+SK V Y A AA++ N
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVN 216
Query: 86 NVQLD 90
+ L+
Sbjct: 217 GMLLN 221
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G L++ NLD + +E ++E F G + + D +G+SKG V ++ +A A+
Sbjct: 335 GVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAIT 394
Query: 83 RYNNVQLDGKPMKIEI 98
N ++GKP+ + +
Sbjct: 395 EMNTRMINGKPLYVAL 410
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +Y+ N+D S E ++LFS G + + D+ G+SKG V + AV AV+
Sbjct: 233 TNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEE 292
Query: 84 YNNVQLDGKPMKI 96
N+ +++G+ + +
Sbjct: 293 LNDKEINGQKIYV 305
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 12 QQAGRASAI-ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEV 69
++ G +S + E LY+ L+ V+ + E+FS +G + + D S +S G A V
Sbjct: 39 EEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYV 98
Query: 70 VYSRRADAVAAVKRYNNVQLDGKPMKI 96
Y + D A++ N ++G+P +I
Sbjct: 99 NYHKYEDGEKAIEELNYNPIEGRPCRI 125
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVV 70
+ G + + T L + L + D++E+FS G L ++ YD R+GRS+G A V
Sbjct: 105 RHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVY 164
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
+ R D+ A++R N ++LDG+ ++++ +I R P + G
Sbjct: 165 FERIDDSKEAMERANGMELDGRRIRVDY---SITKRAHTPTPGIYMG 208
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVV 70
+ G + + T L + L + D++E+FS G L ++ YD R+GRS+G A V
Sbjct: 107 RHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVY 166
Query: 71 YSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 117
+ R D+ A++R N ++LDG+ ++++ +I R P + G
Sbjct: 167 FERIDDSKEAMERANGMELDGRRIRVDY---SITKRAHTPTPGIYMG 210
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G L++ NLD + +E ++E F G + + D +G+SKG V +S +A A+
Sbjct: 341 GVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAIT 400
Query: 83 RYNNVQLDGKPMKIEI 98
N + GKP+ + +
Sbjct: 401 EMNQRMIQGKPLYVAL 416
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +Y+ NL V N +E+F G + + D+ G+S+G V + A+ AVK
Sbjct: 239 TNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKE 298
Query: 84 YNNVQLDGKPMKI 96
N+ ++DG+ + +
Sbjct: 299 MNDKEIDGQKLYV 311
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
LY+ L+ V+ + E+FS +G + + D + +S G A V + + AD A++
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 85 NNVQLDGKPMKI 96
N +DG+P +I
Sbjct: 120 NYSLVDGRPCRI 131
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G L+I NLD + +E ++E F G + + D +G+SKG V +S +A A+
Sbjct: 334 GVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAIT 393
Query: 83 RYNNVQLDGKPMKIEI 98
N + GKP+ + +
Sbjct: 394 EMNQRMIYGKPLYVAL 409
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +Y N+D S E+ K+LF G + + D G+SKG V + AV AV
Sbjct: 232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDE 291
Query: 84 YNNVQLDGKPMKI 96
N+ +++G+ + +
Sbjct: 292 LNDKEINGQKIYV 304
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 14 AGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYS 72
A A +T LY+ L+ V+ + E+FS +G + + D + +S G A V +
Sbjct: 41 ADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFH 100
Query: 73 RRADAVAAVKRYNNVQLDGKPMKI 96
+ D A++ N ++G+P +I
Sbjct: 101 KFEDGEKAIEDLNYSLIEGRPCRI 124
>sp|P52299|NCBP2_XENLA Nuclear cap-binding protein subunit 2 OS=Xenopus laevis GN=ncbp2
PE=2 SV=2
Length = 153
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSK-GTAEVVYSRRAD 76
S ++ LY+ NL + + E I ELFS+ GD+KR + D+ ++ G V Y RAD
Sbjct: 31 SLLKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRAD 90
Query: 77 AVAAVKRYNNVQLDGKPMKIE 97
A A++ N +LD + ++ +
Sbjct: 91 AEQAMRFINGTRLDDRIVRTD 111
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGR-SKGTAEVVYSRRADAVAA 80
+ + +Y+SNL + ++N D+ +FS+ G + + +I D+ R SKG + V++ + A
Sbjct: 8 SKSTVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKESAQNC 67
Query: 81 VKRYNNVQLDGKPMKIEIVGTN 102
V+ NN QL G+ +K I N
Sbjct: 68 VRGLNNKQLFGRAIKASIAKDN 89
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +Y+ N+D S ED+K+LF+ G + + D G+SKG V Y AV AV+
Sbjct: 233 TNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEE 292
Query: 84 YNNVQLDGKPMKI 96
N+ +++G+ + +
Sbjct: 293 LNDKEINGQKIYV 305
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G L+I NLD + +E ++E F G + + D +G+SKG V +S +A A+
Sbjct: 335 GVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAIT 394
Query: 83 RYNNVQLDGKPMKIEI 98
N GKP+ + +
Sbjct: 395 EMNQRMFFGKPLYVAL 410
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 14 AGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYS 72
A A+ E+ LY+ L+ V+ + E+FS +G + + D S +S G A V Y
Sbjct: 42 ADSANVAESTASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYH 101
Query: 73 RRADAVAAVKRYNNVQLDGKPMKI 96
+ D A++ N ++G+P +I
Sbjct: 102 KMEDGEKAIEELNYSPIEGRPCRI 125
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N V +E +KELFS+ G + D +G+SKG V Y + DA AV+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 84 YNNVQLDGK 92
N ++ GK
Sbjct: 251 MNGKEISGK 259
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G LYI NLD + +E +++ FS G + + + GRSKG V +S +A AV
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 351
Query: 83 RYNNVQLDGKPMKIEI 98
N + KP+ + +
Sbjct: 352 EMNGRIVGSKPLYVAL 367
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
LY+ +L V+ + E FS G + + D + RS G A V + + ADA A+
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 85 NNVQLDGKPMKI 96
N + GKP++I
Sbjct: 73 NFDVIKGKPIRI 84
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKR 83
+LY+ NL +GV + ++ LF+E G + + YDR SGRSKG V S + A+
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 84 YNNVQLDGKPMKI 96
N LDG+ +++
Sbjct: 318 LNGADLDGRQIRV 330
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 1 MFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR- 59
MFAD + PV++ ++ KL++ NL + V + + +LF G+++ + YD+
Sbjct: 80 MFADGDDSAPVER----NSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKV 135
Query: 60 SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96
+GRS+G V S A+ AA +++N + +G+P+++
Sbjct: 136 TGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82
G L+I NLD + +E +KE F+ G + + D+ G SKG V +S +A A+
Sbjct: 333 GVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMT 392
Query: 83 RYNNVQLDGKPMKIEI 98
N + GKP+ + I
Sbjct: 393 EKNQQIVAGKPLYVAI 408
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 8 AFPVQQAGRASAIETG----TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRS 63
A V + R S +E T +Y+ N+D ++E+ ++LFS+ G++ ++ D G+
Sbjct: 211 AMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKP 270
Query: 64 KGTAEVVYSRRADAVAAVKRYN 85
KG V + A AV+ N
Sbjct: 271 KGFGFVNFVDHNAAAKAVEELN 292
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
++I NL + N+ + E FS G++ + D +G S+G V + +DA A++ N
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVN 199
Query: 86 NVQLDG 91
+ ++G
Sbjct: 200 GMLMNG 205
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGR-SKGTAEVVYSRRADAVAAVKRY 84
LY+ LD ++ + ++FS +G + + D + S G A V Y+ A++
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQEL 111
Query: 85 NNVQLDGKPMKI 96
N +++G+P +I
Sbjct: 112 NYAEINGRPCRI 123
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 44/73 (60%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N+D V++E+ +++F + G++ ++ D+ G+S+G V +S A AAV
Sbjct: 233 TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDE 292
Query: 84 YNNVQLDGKPMKI 96
N+ ++ G+ + +
Sbjct: 293 MNDKEIKGQKLYV 305
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
LY+ LD V+ + ELFS +G + + D + RS G A V Y+ AD A++
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 85 NNVQLDGKPMKI 96
N + GKP +I
Sbjct: 114 NYTLIKGKPCRI 125
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
++I NLD + N+ + + F+ G++ + D G SKG V Y A A+K N
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN 201
Query: 86 NVQLDGKPMKIEIVGTNIATR 106
+ L+ K + VG +I+ +
Sbjct: 202 GMLLNDKKV---FVGHHISKK 219
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 44/73 (60%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
T +YI N+D V++E+ +++F + G++ ++ D+ G+S+G V +S A AAV
Sbjct: 233 TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDE 292
Query: 84 YNNVQLDGKPMKI 96
N+ ++ G+ + +
Sbjct: 293 MNDKEIKGQKLYV 305
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
LY+ LD V+ + ELFS +G + + D + RS G A V Y+ AD A++
Sbjct: 54 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 113
Query: 85 NNVQLDGKPMKI 96
N + GKP +I
Sbjct: 114 NYTLIKGKPCRI 125
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85
++I NLD + N+ + + F+ G++ + D G SKG V Y A A+K N
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN 201
Query: 86 NVQLDGKPMKIEIVGTNIATR 106
+ L+ K + VG +I+ +
Sbjct: 202 GMLLNDKKV---FVGHHISKK 219
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-RSGRSKGTAEVVYSRRA 75
A IE +L+I N+ Y S ED + LFS+ G L+ I D R+G+SKG V + ++
Sbjct: 303 AQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKE 362
Query: 76 DAVAAVKRYNNVQLDGKPMKI 96
DA A + + G+ + I
Sbjct: 363 DATRAYRSLDKQIFQGRLLHI 383
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%)
Query: 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83
++L + L + E ++E FS+ GD+ + R+G S+ A + Y A AVK
Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKY 61
Query: 84 YNNVQLDGKPMKIEIVGT 101
+N +D +++E T
Sbjct: 62 FNKSFIDTARIEVEFAKT 79
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2
PE=1 SV=1
Length = 577
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
+++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y + A++A++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 85 NNVQLDGKPMKIE 97
N + G+ ++++
Sbjct: 78 NGREFSGRALRVD 90
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKR 83
K+++ NL + + + ELF G+++ + YD+ +GRS+G V S + + AA ++
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 84 YNNVQLDGKPMKI 96
+N +LDG+ +++
Sbjct: 148 FNGYELDGRALRV 160
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKR 83
++Y+ NL +GV + ++ LFSE G + + YDR SGRS+G V YS + A++
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 84 YNNVQLDGKPMKI 96
+ V L+G+ +++
Sbjct: 249 LDGVDLNGRAIRV 261
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2
PE=2 SV=1
Length = 577
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
+++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y + A++A++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 85 NNVQLDGKPMKIE 97
N + G+ ++++
Sbjct: 78 NGREFSGRALRVD 90
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2
PE=1 SV=2
Length = 580
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 26 LYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84
+++ N+ Y + E +K++FSEVG + + + YDR +G+ KG Y + A++A++
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 85 NNVQLDGKPMKIE 97
N + G+ ++++
Sbjct: 78 NGREFSGRALRVD 90
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,983,807
Number of Sequences: 539616
Number of extensions: 3578611
Number of successful extensions: 43288
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 768
Number of HSP's that attempted gapping in prelim test: 20514
Number of HSP's gapped (non-prelim): 14956
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)