Query 030010
Match_columns 184
No_of_seqs 228 out of 2139
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 11:11:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q2s_C Cleavage and polyadenyl 99.9 3.8E-25 1.3E-29 172.8 8.2 81 22-102 67-150 (229)
2 4fxv_A ELAV-like protein 1; RN 99.9 3.8E-23 1.3E-27 141.4 11.8 81 21-101 17-98 (99)
3 1h2v_Z 20 kDa nuclear CAP bind 99.9 6.8E-23 2.3E-27 150.7 13.2 86 18-103 34-120 (156)
4 2do0_A HnRNP M, heterogeneous 99.9 1.8E-21 6.3E-26 135.6 15.2 90 16-105 8-97 (114)
5 2dgo_A Cytotoxic granule-assoc 99.9 2.4E-21 8.4E-26 135.3 15.3 92 15-106 7-99 (115)
6 3s8s_A Histone-lysine N-methyl 99.9 6.6E-22 2.3E-26 137.7 12.1 82 21-102 4-86 (110)
7 2cpz_A CUG triplet repeat RNA- 99.9 1E-21 3.6E-26 137.3 13.2 91 16-106 18-109 (115)
8 1x5s_A Cold-inducible RNA-bind 99.9 1.4E-21 4.9E-26 133.6 12.6 90 15-104 4-94 (102)
9 2dgs_A DAZ-associated protein 99.9 1.9E-21 6.6E-26 132.4 13.1 88 17-105 4-92 (99)
10 1whw_A Hypothetical protein ri 99.9 1.7E-21 5.9E-26 132.5 12.5 88 18-105 3-91 (99)
11 2dnm_A SRP46 splicing factor; 99.9 1E-21 3.4E-26 134.7 11.3 90 16-105 6-96 (103)
12 1x5u_A Splicing factor 3B subu 99.9 2E-21 7E-26 133.5 12.5 91 14-104 6-97 (105)
13 2cqd_A RNA-binding region cont 99.9 3.3E-21 1.1E-25 134.9 13.7 90 14-104 8-98 (116)
14 2dnz_A Probable RNA-binding pr 99.9 3.1E-21 1.1E-25 130.2 13.0 84 20-103 2-86 (95)
15 2cq0_A Eukaryotic translation 99.9 2.2E-21 7.5E-26 133.0 11.9 89 16-104 8-97 (103)
16 2do4_A Squamous cell carcinoma 99.9 4.5E-21 1.6E-25 130.7 13.3 88 16-103 10-97 (100)
17 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.2E-21 7.7E-26 128.7 11.4 83 20-102 3-86 (87)
18 3ex7_B RNA-binding protein 8A; 99.9 1.6E-21 5.5E-26 138.3 11.1 89 16-104 15-104 (126)
19 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.4E-21 4.7E-26 133.7 10.4 90 16-105 5-95 (102)
20 2khc_A Testis-specific RNP-typ 99.9 1.7E-21 5.9E-26 136.7 11.1 84 17-100 34-118 (118)
21 2la6_A RNA-binding protein FUS 99.9 4E-21 1.4E-25 130.8 12.4 87 14-100 4-99 (99)
22 2d9p_A Polyadenylate-binding p 99.9 5.8E-21 2E-25 130.9 13.2 89 16-105 8-96 (103)
23 1p27_B RNA-binding protein 8A; 99.9 3.7E-21 1.3E-25 132.4 12.2 88 16-103 16-104 (106)
24 2cq3_A RNA-binding protein 9; 99.9 1E-20 3.4E-25 129.7 14.2 92 14-106 6-97 (103)
25 2cqc_A Arginine/serine-rich sp 99.9 3.1E-21 1E-25 130.1 11.5 88 14-101 6-94 (95)
26 2dnh_A Bruno-like 5, RNA bindi 99.9 8.8E-21 3E-25 130.3 13.7 87 19-105 11-100 (105)
27 3ulh_A THO complex subunit 4; 99.9 4.3E-21 1.5E-25 132.3 12.2 85 16-100 22-106 (107)
28 2ywk_A Putative RNA-binding pr 99.9 2.3E-21 8E-26 130.8 10.6 88 14-101 7-94 (95)
29 2dng_A Eukaryotic translation 99.9 7.5E-21 2.5E-25 130.4 13.1 89 14-104 6-95 (103)
30 2e5h_A Zinc finger CCHC-type a 99.9 3.2E-21 1.1E-25 129.9 11.0 87 14-100 7-94 (94)
31 2cph_A RNA binding motif prote 99.9 8.3E-21 2.8E-25 130.8 13.1 90 16-105 8-100 (107)
32 1u6f_A Tcubp1, RNA-binding pro 99.9 1.3E-20 4.6E-25 135.7 14.6 86 18-103 37-123 (139)
33 2kxn_B Transformer-2 protein h 99.9 2.4E-21 8.2E-26 138.5 10.5 90 14-103 37-127 (129)
34 2fy1_A RNA-binding motif prote 99.9 1.3E-20 4.3E-25 132.3 13.9 85 19-103 3-87 (116)
35 3md1_A Nuclear and cytoplasmic 99.9 7.1E-21 2.4E-25 125.2 11.7 80 23-102 1-81 (83)
36 1x4h_A RNA-binding protein 28; 99.9 7.9E-21 2.7E-25 131.7 12.5 90 16-105 8-104 (111)
37 2dhg_A TRNA selenocysteine ass 99.9 7.4E-21 2.5E-25 130.5 12.1 88 17-104 3-92 (104)
38 3mdf_A Peptidyl-prolyl CIS-tra 99.9 3.1E-21 1.1E-25 127.5 9.8 82 19-100 3-85 (85)
39 2lxi_A RNA-binding protein 10; 99.9 5.1E-22 1.7E-26 133.7 6.0 82 23-104 1-85 (91)
40 2dgu_A Heterogeneous nuclear r 99.9 1E-20 3.5E-25 129.7 12.7 85 14-105 2-86 (103)
41 2dgp_A Bruno-like 4, RNA bindi 99.9 6.8E-21 2.3E-25 131.1 11.8 88 17-104 7-98 (106)
42 2dgv_A HnRNP M, heterogeneous 99.9 8.9E-21 3E-25 127.2 12.0 87 17-104 2-88 (92)
43 2div_A TRNA selenocysteine ass 99.9 5.9E-21 2E-25 129.8 11.1 86 18-103 4-95 (99)
44 3pgw_S U1-70K; protein-RNA com 99.9 1.7E-20 5.8E-25 158.9 16.0 85 20-104 99-184 (437)
45 3p5t_L Cleavage and polyadenyl 99.9 1.1E-21 3.7E-26 131.6 6.9 82 24-105 2-86 (90)
46 2cpe_A RNA-binding protein EWS 99.8 7.2E-21 2.5E-25 132.5 11.2 88 17-104 9-105 (113)
47 1x4c_A Splicing factor, argini 99.8 1.7E-20 5.7E-25 129.9 12.9 83 15-103 7-94 (108)
48 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.5E-20 8.7E-25 127.6 13.7 88 16-104 8-95 (103)
49 2kt5_A RNA and export factor-b 99.8 1.6E-20 5.3E-25 133.0 12.9 93 15-107 27-119 (124)
50 1x5t_A Splicing factor 3B subu 99.8 5.2E-21 1.8E-25 129.3 10.0 84 21-104 3-88 (96)
51 2x1f_A MRNA 3'-END-processing 99.8 9E-21 3.1E-25 128.4 10.9 84 22-105 1-85 (96)
52 1x4a_A Splicing factor, argini 99.8 3.3E-20 1.1E-24 128.4 13.8 93 9-103 8-100 (109)
53 3n9u_C Cleavage and polyadenyl 99.8 6.8E-21 2.3E-25 140.4 10.9 81 22-102 54-137 (156)
54 2dgx_A KIAA0430 protein; RRM d 99.8 1E-20 3.5E-25 128.3 11.0 86 17-104 3-92 (96)
55 2lkz_A RNA-binding protein 5; 99.8 2.4E-21 8.1E-26 131.5 7.8 84 18-101 4-94 (95)
56 2jrs_A RNA-binding protein 39; 99.8 1.4E-20 4.9E-25 130.4 11.9 86 17-102 20-106 (108)
57 4f25_A Polyadenylate-binding p 99.8 8.2E-21 2.8E-25 133.0 10.7 82 22-104 4-85 (115)
58 2cpf_A RNA binding motif prote 99.8 1.1E-20 3.9E-25 128.2 11.0 85 21-105 3-91 (98)
59 1oo0_B CG8781-PA, drosophila Y 99.8 1E-20 3.4E-25 131.1 10.8 88 16-103 19-107 (110)
60 2dgw_A Probable RNA-binding pr 99.8 2.3E-20 8E-25 125.0 11.8 85 17-103 4-88 (91)
61 1wi8_A EIF-4B, eukaryotic tran 99.8 1.6E-20 5.4E-25 129.0 11.2 87 16-104 8-96 (104)
62 2dh8_A DAZ-associated protein 99.8 1.2E-20 4E-25 129.7 10.2 89 15-104 8-97 (105)
63 2cqg_A TDP-43, TAR DNA-binding 99.8 5.3E-20 1.8E-24 126.0 13.3 90 14-105 6-96 (103)
64 2err_A Ataxin-2-binding protei 99.8 9.9E-21 3.4E-25 131.3 9.3 92 10-102 16-107 (109)
65 2cqp_A RNA-binding protein 12; 99.8 8.9E-21 3.1E-25 128.7 8.8 85 17-101 9-94 (98)
66 2cq4_A RNA binding motif prote 99.8 7.2E-21 2.5E-25 132.7 7.9 84 20-104 22-106 (114)
67 1wez_A HnRNP H', FTP-3, hetero 99.8 4.2E-20 1.4E-24 126.8 11.6 83 17-101 9-91 (102)
68 2m2b_A RNA-binding protein 10; 99.8 9.6E-21 3.3E-25 135.5 8.7 92 12-104 12-110 (131)
69 3s7r_A Heterogeneous nuclear r 99.8 4.5E-20 1.5E-24 122.6 11.3 82 17-99 5-87 (87)
70 4a8x_A RNA-binding protein wit 99.8 2.1E-20 7.1E-25 124.2 9.5 82 22-103 3-86 (88)
71 3ucg_A Polyadenylate-binding p 99.8 3.4E-20 1.2E-24 123.5 10.5 79 23-102 6-85 (89)
72 3ns6_A Eukaryotic translation 99.8 5.1E-21 1.8E-25 130.8 6.5 82 21-102 4-93 (100)
73 2j76_E EIF-4B, EIF4B, eukaryot 99.8 5.3E-21 1.8E-25 130.6 6.6 91 10-102 6-98 (100)
74 2fc9_A NCL protein; structure 99.8 4.2E-20 1.4E-24 126.1 11.0 86 15-103 7-92 (101)
75 1x5o_A RNA binding motif, sing 99.8 1.4E-19 4.6E-24 126.2 13.6 86 16-101 18-111 (114)
76 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.6E-20 1.6E-24 136.9 11.9 89 16-104 65-154 (165)
77 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 5.4E-20 1.8E-24 132.3 11.6 86 14-99 54-140 (140)
78 1wg5_A Heterogeneous nuclear r 99.8 8E-20 2.7E-24 125.6 12.0 86 17-103 9-95 (104)
79 2kn4_A Immunoglobulin G-bindin 99.8 8E-20 2.7E-24 134.3 12.4 89 17-105 64-153 (158)
80 2ek1_A RNA-binding protein 12; 99.8 9.9E-21 3.4E-25 127.7 6.8 84 18-101 10-94 (95)
81 2dgt_A RNA-binding protein 30; 99.8 9.4E-20 3.2E-24 122.4 11.5 82 16-104 3-84 (92)
82 2cpy_A RNA-binding protein 12; 99.8 7E-21 2.4E-25 133.1 6.1 86 17-103 9-95 (114)
83 1p1t_A Cleavage stimulation fa 99.8 1.2E-20 4.2E-25 129.3 7.0 87 18-104 3-90 (104)
84 2dnq_A RNA-binding protein 4B; 99.8 1.5E-19 5.1E-24 120.9 12.0 80 18-104 3-82 (90)
85 1s79_A Lupus LA protein; RRM, 99.8 3.8E-20 1.3E-24 127.3 9.3 81 20-101 8-88 (103)
86 1sjq_A Polypyrimidine tract-bi 99.8 4E-20 1.4E-24 127.3 9.1 83 18-105 11-95 (105)
87 2db1_A Heterogeneous nuclear r 99.8 5.6E-20 1.9E-24 129.3 10.0 86 17-103 11-99 (118)
88 2hgn_A Heterogeneous nuclear r 99.8 5.7E-21 1.9E-25 138.2 4.5 83 17-101 40-122 (139)
89 2lea_A Serine/arginine-rich sp 99.8 1.8E-20 6.2E-25 134.9 6.9 90 16-105 40-130 (135)
90 2dis_A Unnamed protein product 99.8 2.2E-19 7.4E-24 124.1 11.8 86 20-105 5-95 (109)
91 2rs2_A Musashi-1, RNA-binding 99.8 7.5E-20 2.6E-24 126.9 9.5 86 17-103 19-105 (109)
92 1x4e_A RNA binding motif, sing 99.8 1.3E-20 4.3E-25 124.7 5.2 80 20-99 2-82 (85)
93 2jwn_A Embryonic polyadenylate 99.8 1.3E-19 4.5E-24 128.0 10.7 81 22-103 35-116 (124)
94 3r27_A HnRNP L, heterogeneous 99.8 1.4E-19 5E-24 123.5 10.4 81 17-102 15-97 (100)
95 3beg_B Splicing factor, argini 99.8 7.1E-20 2.4E-24 128.2 9.1 80 15-100 8-92 (115)
96 1wex_A Hypothetical protein (r 99.8 3.4E-19 1.2E-23 122.8 12.3 84 16-104 8-93 (104)
97 2fc8_A NCL protein; structure 99.8 2.8E-19 9.5E-24 122.1 11.8 84 17-103 9-93 (102)
98 1wel_A RNA-binding protein 12; 99.8 3.7E-20 1.3E-24 131.2 7.6 86 17-103 19-105 (124)
99 2wbr_A GW182, gawky, LD47780P; 99.8 1.1E-19 3.7E-24 120.6 8.9 74 22-100 6-79 (89)
100 1x4b_A Heterogeneous nuclear r 99.8 7.9E-20 2.7E-24 127.8 8.7 84 20-104 24-108 (116)
101 2cpi_A CCR4-NOT transcription 99.8 9.4E-20 3.2E-24 126.7 8.9 87 17-103 9-102 (111)
102 2a3j_A U1 small nuclear ribonu 99.8 2.6E-19 8.9E-24 127.6 11.2 85 17-103 23-111 (127)
103 1x4d_A Matrin 3; structural ge 99.8 1.1E-19 3.8E-24 124.7 8.9 82 18-104 10-94 (102)
104 2hgl_A HNRPF protein, heteroge 99.8 8.5E-20 2.9E-24 131.6 8.6 85 17-102 38-125 (136)
105 1why_A Hypothetical protein ri 99.8 2.9E-19 9.9E-24 121.1 10.8 81 18-103 12-94 (97)
106 2f3j_A RNA and export factor b 99.8 1.7E-19 5.8E-24 135.5 10.5 89 17-105 82-170 (177)
107 2cq1_A PTB-like protein L; RRM 99.8 4.2E-19 1.4E-23 121.7 11.6 83 17-104 9-93 (101)
108 2cpd_A Apobec-1 stimulating pr 99.8 7.1E-19 2.4E-23 119.6 12.7 82 15-103 7-90 (99)
109 2mss_A Protein (musashi1); RNA 99.8 5.6E-20 1.9E-24 118.8 6.7 74 25-99 1-75 (75)
110 2dnn_A RNA-binding protein 12; 99.8 9E-20 3.1E-24 126.7 8.2 82 18-101 11-92 (109)
111 2xnq_A Nuclear polyadenylated 99.8 3.2E-19 1.1E-23 121.2 10.8 85 11-102 10-95 (97)
112 2ki2_A SS-DNA binding protein 99.8 2.6E-20 9E-25 124.5 5.1 82 24-106 2-84 (90)
113 2dnp_A RNA-binding protein 14; 99.8 3.1E-19 1E-23 119.4 10.3 79 18-103 4-82 (90)
114 2cpx_A Hypothetical protein FL 99.8 6.4E-20 2.2E-24 128.0 7.0 86 17-105 19-108 (115)
115 1uaw_A Mouse-musashi-1; RNP-ty 99.8 6E-20 2.1E-24 119.1 6.4 75 24-99 1-76 (77)
116 2ytc_A PRE-mRNA-splicing facto 99.8 3.4E-19 1.2E-23 117.7 9.8 81 15-100 4-85 (85)
117 2ad9_A Polypyrimidine tract-bi 99.8 3.4E-19 1.2E-23 125.4 10.3 83 18-105 26-110 (119)
118 1x4g_A Nucleolysin TIAR; struc 99.8 5.3E-19 1.8E-23 122.4 11.1 82 19-105 21-102 (109)
119 2nlw_A Eukaryotic translation 99.8 2.5E-19 8.5E-24 123.4 9.2 83 19-102 11-100 (105)
120 2cpj_A Non-POU domain-containi 99.8 8E-19 2.7E-23 119.3 11.5 83 17-104 9-91 (99)
121 2jvr_A Nucleolar protein 3; RN 99.8 1.4E-19 4.9E-24 126.0 7.8 80 20-102 25-105 (111)
122 2jvo_A Nucleolar protein 3; nu 99.8 3E-19 1E-23 123.8 9.4 81 16-103 24-104 (108)
123 2e5j_A Methenyltetrahydrofolat 99.8 6.4E-19 2.2E-23 119.5 10.8 81 19-103 15-95 (97)
124 2kvi_A Nuclear polyadenylated 99.8 4.1E-19 1.4E-23 120.2 9.5 80 18-104 5-85 (96)
125 2lmi_A GRSF-1, G-rich sequence 99.8 7.4E-20 2.5E-24 126.5 5.9 86 17-103 5-93 (107)
126 2hvz_A Splicing factor, argini 99.8 5.1E-19 1.7E-23 120.7 9.9 76 24-103 1-76 (101)
127 1fj7_A Nucleolin RBD1, protein 99.8 4.9E-20 1.7E-24 125.7 4.5 84 18-103 12-96 (101)
128 4f02_A Polyadenylate-binding p 99.8 8.2E-19 2.8E-23 134.9 11.9 85 18-102 10-95 (213)
129 1nu4_A U1A RNA binding domain; 99.8 1.7E-19 5.8E-24 122.0 6.9 84 18-103 3-90 (97)
130 2cqh_A IGF-II mRNA-binding pro 99.8 4.6E-19 1.6E-23 119.1 8.6 79 19-103 4-84 (93)
131 1x4f_A Matrin 3; structural ge 99.8 1.7E-18 5.8E-23 120.6 11.6 82 20-106 22-106 (112)
132 2krb_A Eukaryotic translation 99.8 2.2E-19 7.6E-24 117.8 6.7 73 23-96 1-80 (81)
133 1wf1_A RNA-binding protein RAL 99.8 2E-18 6.8E-23 119.6 11.8 80 17-103 21-101 (110)
134 2lcw_A RNA-binding protein FUS 99.7 1.1E-20 3.6E-25 132.4 0.0 83 20-102 4-95 (116)
135 3lqv_A PRE-mRNA branch site pr 99.8 1.3E-18 4.5E-23 121.3 10.7 82 19-102 4-85 (115)
136 2hgm_A HNRPF protein, heteroge 99.8 3E-19 1E-23 127.0 7.3 83 17-101 36-120 (126)
137 2la4_A Nuclear and cytoplasmic 99.8 5.8E-19 2E-23 120.4 8.2 79 18-101 22-100 (101)
138 2dha_A FLJ20171 protein; RRM d 99.8 3.2E-19 1.1E-23 126.4 7.2 82 20-102 20-105 (123)
139 1whx_A Hypothetical protein ri 99.8 1.2E-18 4.2E-23 121.2 9.6 79 21-104 8-86 (111)
140 2i2y_A Fusion protein consists 99.8 2.1E-18 7.1E-23 125.8 11.1 83 16-102 66-148 (150)
141 2xs2_A Deleted in azoospermia- 99.8 5.1E-19 1.7E-23 120.9 7.1 85 18-104 4-88 (102)
142 1fjc_A Nucleolin RBD2, protein 99.8 6.4E-19 2.2E-23 119.0 7.2 82 17-102 10-91 (96)
143 2e44_A Insulin-like growth fac 99.8 2E-18 6.7E-23 116.6 9.4 82 19-103 11-93 (96)
144 1iqt_A AUF1, heterogeneous nuc 99.8 3E-19 1E-23 115.2 5.0 74 25-99 1-75 (75)
145 2e5g_A U6 snRNA-specific termi 99.8 3.7E-18 1.3E-22 115.0 10.4 78 20-103 5-83 (94)
146 1fxl_A Paraneoplastic encephal 99.8 7.3E-18 2.5E-22 123.5 12.1 82 22-103 1-83 (167)
147 2qfj_A FBP-interacting repress 99.8 9E-18 3.1E-22 128.3 13.0 86 21-106 123-209 (216)
148 3md3_A Nuclear and cytoplasmic 99.8 1E-17 3.5E-22 122.6 12.7 83 18-100 82-165 (166)
149 3egn_A RNA-binding protein 40; 99.8 1.1E-18 3.9E-23 126.2 7.3 87 18-104 40-132 (143)
150 1sjr_A Polypyrimidine tract-bi 99.8 1.5E-17 5E-22 122.9 13.3 83 18-103 41-125 (164)
151 1x5p_A Negative elongation fac 99.8 1.8E-17 6.1E-22 112.3 12.4 80 18-104 10-89 (97)
152 2yh0_A Splicing factor U2AF 65 99.7 2.2E-17 7.5E-22 124.5 13.2 84 20-103 111-195 (198)
153 3zzy_A Polypyrimidine tract-bi 99.7 8.8E-18 3E-22 119.8 10.3 86 15-104 20-108 (130)
154 1b7f_A Protein (SXL-lethal pro 99.7 7.5E-18 2.6E-22 123.8 10.3 82 22-103 2-84 (168)
155 2e5i_A Heterogeneous nuclear r 99.7 1.8E-17 6.2E-22 117.4 11.5 78 21-103 23-103 (124)
156 1wg1_A KIAA1579 protein, homol 99.7 4.5E-18 1.5E-22 113.3 8.0 77 21-103 3-79 (88)
157 1l3k_A Heterogeneous nuclear r 99.7 9.6E-18 3.3E-22 126.3 10.8 89 14-103 4-93 (196)
158 1l3k_A Heterogeneous nuclear r 99.7 1.7E-17 5.9E-22 124.9 11.4 89 17-106 98-187 (196)
159 2j8a_A Histone-lysine N-methyl 99.7 6.6E-18 2.3E-22 119.4 8.0 78 24-101 3-95 (136)
160 2cq2_A Hypothetical protein LO 99.7 8.7E-18 3E-22 117.2 8.5 80 19-103 21-107 (114)
161 2g4b_A Splicing factor U2AF 65 99.7 2.6E-17 9E-22 121.4 11.3 79 21-99 92-171 (172)
162 2diu_A KIAA0430 protein; struc 99.7 2.1E-17 7.1E-22 110.7 9.5 78 20-106 5-88 (96)
163 3md3_A Nuclear and cytoplasmic 99.7 2.2E-17 7.5E-22 120.8 10.6 80 24-103 1-80 (166)
164 4f02_A Polyadenylate-binding p 99.7 2.1E-17 7.3E-22 127.0 10.2 81 22-103 102-182 (213)
165 1b7f_A Protein (SXL-lethal pro 99.7 1.1E-16 3.7E-21 117.6 12.6 80 20-99 86-168 (168)
166 3nmr_A Cugbp ELAV-like family 99.7 6.6E-17 2.3E-21 119.4 11.5 81 20-100 92-175 (175)
167 2dnl_A Cytoplasmic polyadenyla 99.7 3.3E-17 1.1E-21 114.3 9.2 79 19-100 4-86 (114)
168 2hzc_A Splicing factor U2AF 65 99.7 3.1E-17 1E-21 108.6 8.3 73 20-98 3-86 (87)
169 2cjk_A Nuclear polyadenylated 99.7 2E-17 7E-22 121.5 7.9 80 22-102 86-166 (167)
170 3tyt_A Heterogeneous nuclear r 99.7 3.8E-17 1.3E-21 125.3 9.7 79 21-103 2-81 (205)
171 3d2w_A TAR DNA-binding protein 99.7 4.1E-17 1.4E-21 109.1 8.7 79 17-103 5-85 (89)
172 2bz2_A Negative elongation fac 99.7 6E-17 2.1E-21 114.3 9.6 80 18-104 34-113 (121)
173 2qfj_A FBP-interacting repress 99.7 6.3E-17 2.1E-21 123.6 10.1 83 20-102 25-108 (216)
174 1fxl_A Paraneoplastic encephal 99.7 1.9E-16 6.4E-21 115.9 11.8 80 20-99 85-167 (167)
175 2pe8_A Splicing factor 45; RRM 99.7 2.1E-16 7.3E-21 108.8 11.3 81 21-101 6-93 (105)
176 1wf0_A TDP-43, TAR DNA-binding 99.7 1.9E-17 6.3E-22 110.1 5.7 78 21-104 3-80 (88)
177 3pgw_A U1-A; protein-RNA compl 99.7 2E-16 6.8E-21 125.9 12.0 84 18-103 4-91 (282)
178 2voo_A Lupus LA protein; RNA-b 99.7 1.6E-16 5.4E-21 120.8 10.5 78 23-101 109-186 (193)
179 3nmr_A Cugbp ELAV-like family 99.7 2.4E-16 8.3E-21 116.3 11.1 81 22-102 2-88 (175)
180 3pgw_A U1-A; protein-RNA compl 99.7 6.1E-16 2.1E-20 123.1 13.1 78 19-100 203-281 (282)
181 2adc_A Polypyrimidine tract-bi 99.7 2.5E-16 8.5E-21 122.3 9.7 82 18-103 29-111 (229)
182 1fje_B Nucleolin RBD12, protei 99.7 3E-16 1E-20 116.3 9.4 80 19-102 95-174 (175)
183 3smz_A Protein raver-1, ribonu 99.7 5.2E-16 1.8E-20 123.6 11.1 87 18-104 179-266 (284)
184 2cjk_A Nuclear polyadenylated 99.7 1.8E-16 6.2E-21 116.4 7.5 78 22-101 2-80 (167)
185 3u1l_A PRE-mRNA-splicing facto 99.6 3.1E-16 1.1E-20 122.7 8.5 82 18-104 129-231 (240)
186 2ghp_A U4/U6 snRNA-associated 99.6 5.2E-16 1.8E-20 124.1 10.0 84 18-102 205-291 (292)
187 2dit_A HIV TAT specific factor 99.6 3.3E-15 1.1E-19 103.8 11.8 85 17-104 9-104 (112)
188 3smz_A Protein raver-1, ribonu 99.6 2.5E-15 8.6E-20 119.7 12.3 82 22-103 94-176 (284)
189 3tyt_A Heterogeneous nuclear r 99.6 9.9E-16 3.4E-20 117.4 8.9 78 21-99 121-204 (205)
190 1qm9_A Polypyrimidine tract-bi 99.6 2.6E-15 9E-20 113.4 10.4 79 20-102 117-197 (198)
191 1qm9_A Polypyrimidine tract-bi 99.6 1E-15 3.5E-20 115.7 8.0 78 22-103 2-80 (198)
192 1fje_B Nucleolin RBD12, protei 99.6 2.8E-16 9.5E-21 116.4 2.9 85 18-103 8-92 (175)
193 2adc_A Polypyrimidine tract-bi 99.6 5.2E-15 1.8E-19 114.8 10.2 79 20-102 148-228 (229)
194 3sde_A Paraspeckle component 1 99.6 4.5E-15 1.5E-19 117.3 9.9 83 22-104 95-181 (261)
195 1jmt_A Splicing factor U2AF 35 99.6 6.4E-16 2.2E-20 106.2 4.3 72 28-99 20-103 (104)
196 3v4m_A Splicing factor U2AF 65 99.6 4.9E-15 1.7E-19 102.0 8.8 81 21-101 3-96 (105)
197 3ue2_A Poly(U)-binding-splicin 99.6 7.1E-15 2.4E-19 103.2 9.2 80 22-101 19-108 (118)
198 2ghp_A U4/U6 snRNA-associated 99.6 3.9E-15 1.3E-19 119.0 8.9 82 22-103 116-198 (292)
199 3sde_A Paraspeckle component 1 99.6 6.4E-15 2.2E-19 116.5 9.9 81 17-102 16-96 (261)
200 2g4b_A Splicing factor U2AF 65 99.6 1.6E-14 5.5E-19 106.4 9.4 75 21-101 2-87 (172)
201 2yh0_A Splicing factor U2AF 65 99.5 2.3E-14 7.7E-19 107.9 9.3 76 22-103 3-89 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.2E-13 7.5E-18 92.9 12.5 78 21-104 8-92 (100)
203 3tht_A Alkylated DNA repair pr 99.5 5.9E-14 2E-18 115.1 8.4 78 18-100 13-97 (345)
204 1owx_A Lupus LA protein, SS-B, 99.4 7.9E-13 2.7E-17 92.8 10.0 81 17-102 12-96 (121)
205 3s6e_A RNA-binding protein 39; 99.4 6E-13 2E-17 92.8 9.4 78 21-101 5-92 (114)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 1.4E-11 4.7E-16 81.7 7.8 75 21-103 5-87 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 1.5E-10 5.1E-15 77.1 6.1 74 20-101 12-94 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 4.8E-10 1.6E-14 86.2 8.5 79 23-101 124-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.6 2.1E-07 7.2E-12 63.3 8.6 73 21-98 19-96 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.2 0.00012 4.3E-09 49.1 13.0 75 19-101 4-83 (104)
211 1whv_A Poly(A)-specific ribonu 98.0 3.7E-05 1.3E-09 51.2 8.6 58 19-84 12-69 (100)
212 1wey_A Calcipressin 1; structu 98.0 1.9E-05 6.4E-10 53.3 6.5 77 21-102 3-84 (104)
213 1uw4_A UPF3X; nonsense mediate 98.0 5.4E-05 1.8E-09 50.1 8.5 69 24-92 2-73 (91)
214 3ctr_A Poly(A)-specific ribonu 97.6 0.00014 4.9E-09 48.5 5.8 55 23-85 6-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.3 0.00081 2.8E-08 46.5 7.1 74 19-99 20-94 (119)
216 2l08_A Regulator of nonsense t 97.2 0.00044 1.5E-08 46.0 4.8 78 22-99 8-93 (97)
217 3pq1_A Poly(A) RNA polymerase; 96.6 0.0012 3.9E-08 56.0 3.5 54 24-82 54-107 (464)
218 2kn4_A Immunoglobulin G-bindin 96.3 0.0041 1.4E-07 44.4 4.5 36 53-89 3-38 (158)
219 3p3d_A Nucleoporin 53; structu 96.2 0.009 3.1E-07 41.8 5.3 77 23-101 7-98 (132)
220 2i2y_A Fusion protein consists 95.3 0.0048 1.7E-07 43.8 1.2 40 61-101 10-50 (150)
221 3d45_A Poly(A)-specific ribonu 93.6 0.29 9.8E-06 41.9 8.4 56 23-86 440-495 (507)
222 2g0c_A ATP-dependent RNA helic 84.3 3.1 0.00011 25.5 5.7 68 25-100 2-75 (76)
223 4eyt_A Telomerase associated p 76.4 13 0.00044 24.0 8.0 60 20-86 9-68 (129)
224 4f25_A Polyadenylate-binding p 72.3 1.1 3.7E-05 29.8 0.8 20 20-39 94-113 (115)
225 2pk2_A Cyclin-T1, protein TAT; 59.6 1.9 6.5E-05 35.0 0.0 9 35-43 229-237 (358)
226 4bby_A Alkyldihydroxyacetoneph 52.0 12 0.0004 32.9 3.7 55 31-85 351-409 (658)
227 3lqv_P Splicing factor 3B subu 51.0 8.2 0.00028 20.7 1.6 14 157-170 19-32 (39)
228 4e8u_A Putative uncharacterize 49.6 52 0.0018 23.8 6.2 50 23-74 12-72 (172)
229 3fry_A Probable copper-exporti 42.0 49 0.0017 19.1 6.2 55 23-83 6-60 (73)
230 1wvf_A 4-cresol dehydrogenase 35.7 25 0.00086 29.7 3.2 43 39-81 217-261 (520)
231 2fho_A Spliceosomal protein SF 35.0 17 0.00056 20.4 1.3 15 156-170 17-31 (47)
232 3fut_A Dimethyladenosine trans 31.3 55 0.0019 25.1 4.3 30 23-53 110-139 (271)
233 3pm9_A Putative oxidoreductase 31.2 72 0.0025 26.6 5.3 52 33-84 196-251 (476)
234 2i9x_A Putative septation prot 27.1 1E+02 0.0036 19.5 4.3 25 49-73 5-30 (87)
235 2lfv_A Protein DAMX; cell divi 33.1 13 0.00045 24.6 0.0 51 35-86 34-86 (106)
236 2rf4_B DNA-directed RNA polyme 26.5 56 0.0019 20.7 2.8 31 17-47 13-43 (87)
237 3uzu_A Ribosomal RNA small sub 25.9 33 0.0011 26.5 2.1 33 24-56 115-147 (279)
238 2okq_A Hypothetical protein YB 25.8 1.7E+02 0.0058 20.3 6.3 44 40-83 50-109 (141)
239 3ts2_A Protein LIN-28 homolog 25.3 7.2 0.00025 27.5 -1.7 28 38-72 2-29 (148)
240 3swz_A Steroid 17-alpha-hydrox 24.8 1.1E+02 0.0038 24.7 5.3 57 27-92 18-78 (494)
241 2do5_A Splicing factor 3B subu 23.8 54 0.0019 18.5 2.2 18 160-177 28-45 (58)
242 2ia9_A Putative septation prot 23.4 1.3E+02 0.0044 19.6 4.3 25 49-73 5-30 (100)
243 3h7h_B Transcription elongatio 22.9 51 0.0017 21.7 2.3 25 63-87 50-74 (106)
244 2uuu_A Alkyldihydroxyacetoneph 22.6 60 0.0021 27.9 3.3 49 37-85 287-339 (584)
245 1qyr_A KSGA, high level kasuga 22.5 74 0.0025 24.0 3.5 29 24-52 91-119 (252)
246 2i9z_A Putative septation prot 22.1 1.4E+02 0.0049 19.6 4.3 25 49-73 5-30 (105)
247 2cu1_A Mitogen-activated prote 21.8 1.7E+02 0.006 19.0 6.2 66 30-103 23-89 (103)
248 3lpe_A Putative transcription 21.7 61 0.0021 20.5 2.4 33 50-86 40-72 (92)
249 3uly_B Charged multivesicular 21.6 45 0.0016 20.2 1.6 14 160-173 7-20 (69)
250 1ywx_A 30S ribosomal protein S 20.2 1.9E+02 0.0064 18.8 4.8 46 33-79 28-79 (102)
No 1
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.91 E-value=3.8e-25 Score=172.76 Aligned_cols=81 Identities=26% Similarity=0.368 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCC--CeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVG--DLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G--~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
..++|||+|||+++++++|+++|++|| .|+.|+|+.++ +++++|||||+|.+.++|++||+.||+..|.++.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568899999999999999999999999 99999999998 999999999999999999999999999999999999999
Q ss_pred eeCC
Q 030010 99 VGTN 102 (184)
Q Consensus 99 ~~~~ 102 (184)
+++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=3.8e-23 Score=141.35 Aligned_cols=81 Identities=26% Similarity=0.463 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 030010 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
..+++|||+|||+++|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|++||+.||+..|.|++|+|+++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred eC
Q 030010 100 GT 101 (184)
Q Consensus 100 ~~ 101 (184)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 3
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.90 E-value=6.8e-23 Score=150.71 Aligned_cols=86 Identities=29% Similarity=0.437 Sum_probs=80.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
....+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.++.|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 444578999999999999999999999999999999999998 7899999999999999999999999999999999999
Q ss_pred EEeeCCC
Q 030010 97 EIVGTNI 103 (184)
Q Consensus 97 ~~~~~~~ 103 (184)
+++++..
T Consensus 114 ~~a~~~~ 120 (156)
T 1h2v_Z 114 DWDAGFK 120 (156)
T ss_dssp EEESCCC
T ss_pred EECCCCC
Confidence 9998643
No 4
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.8e-21 Score=135.64 Aligned_cols=90 Identities=29% Similarity=0.510 Sum_probs=82.8
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
......+.++|||+|||+++++++|+++|++||.|..|.|+.++++++++||||+|.+.++|++||+.||+..|.++.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 34556778999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEeeCCCCC
Q 030010 96 IEIVGTNIAT 105 (184)
Q Consensus 96 V~~~~~~~~~ 105 (184)
|+++......
T Consensus 88 v~~a~~~~~~ 97 (114)
T 2do0_A 88 VKMDERALPK 97 (114)
T ss_dssp EEECSCCCCC
T ss_pred EEEcccCCCC
Confidence 9998765443
No 5
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.88 E-value=2.4e-21 Score=135.29 Aligned_cols=92 Identities=21% Similarity=0.359 Sum_probs=84.6
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 030010 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
.......+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 7 GQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp SSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 345566778999999999999999999999999999999999997 8999999999999999999999999999999999
Q ss_pred EEEEEeeCCCCCC
Q 030010 94 MKIEIVGTNIATR 106 (184)
Q Consensus 94 i~V~~~~~~~~~~ 106 (184)
|+|+++.+.....
T Consensus 87 l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 87 IRTNWATRKPPAP 99 (115)
T ss_dssp CEEEESSCCCCCS
T ss_pred EEEEEccCCCCCC
Confidence 9999998765543
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=6.6e-22 Score=137.71 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 030010 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||+.||+..|.|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999998 7999999999999999999999999999999999999998
Q ss_pred eCC
Q 030010 100 GTN 102 (184)
Q Consensus 100 ~~~ 102 (184)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 7
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.88 E-value=1e-21 Score=137.26 Aligned_cols=91 Identities=21% Similarity=0.341 Sum_probs=83.3
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
.+....+.++|||+|||+++++++|+++|++||.|..|+|+.++ ++++++||||+|.+.++|++||+.||+..|.++.|
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34555677999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EEEEeeCCCCCC
Q 030010 95 KIEIVGTNIATR 106 (184)
Q Consensus 95 ~V~~~~~~~~~~ 106 (184)
+|++++++....
T Consensus 98 ~V~~a~~~~~~~ 109 (115)
T 2cpz_A 98 KVQLKRSKNDSK 109 (115)
T ss_dssp EEECCCCSCCCC
T ss_pred EEEEcCCCCcCC
Confidence 999998765433
No 8
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.4e-21 Score=133.59 Aligned_cols=90 Identities=22% Similarity=0.467 Sum_probs=83.0
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 030010 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
+......+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.++.
T Consensus 4 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 4 GSSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp SCCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 345566778999999999999999999999999999999999988 8889999999999999999999999999999999
Q ss_pred EEEEEeeCCCC
Q 030010 94 MKIEIVGTNIA 104 (184)
Q Consensus 94 i~V~~~~~~~~ 104 (184)
|+|+++++...
T Consensus 84 l~v~~a~~~~~ 94 (102)
T 1x5s_A 84 IRVDQAGKSSD 94 (102)
T ss_dssp CEEEEEECCCC
T ss_pred EEEEECCCCCC
Confidence 99999987554
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=132.35 Aligned_cols=88 Identities=15% Similarity=0.309 Sum_probs=81.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
.+...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+ ||+..|.|+.|+
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 4556678999999999999999999999999999999999998 78999999999999999999998 999999999999
Q ss_pred EEEeeCCCCC
Q 030010 96 IEIVGTNIAT 105 (184)
Q Consensus 96 V~~~~~~~~~ 105 (184)
|+++.++...
T Consensus 83 V~~a~~~~~~ 92 (99)
T 2dgs_A 83 VKRAEPRDSK 92 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCccc
Confidence 9999865543
No 10
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.7e-21 Score=132.51 Aligned_cols=88 Identities=25% Similarity=0.360 Sum_probs=81.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
+...+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.++.|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345678999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEeeCCCCC
Q 030010 97 EIVGTNIAT 105 (184)
Q Consensus 97 ~~~~~~~~~ 105 (184)
+++.+....
T Consensus 83 ~~a~~~~~~ 91 (99)
T 1whw_A 83 LPSTIKKEA 91 (99)
T ss_dssp EECCCCSTT
T ss_pred EEcCCCccc
Confidence 999876553
No 11
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=134.69 Aligned_cols=90 Identities=20% Similarity=0.363 Sum_probs=83.1
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
.++...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 45566778999999999999999999999999999999999988 78999999999999999999999999999999999
Q ss_pred EEEEeeCCCCC
Q 030010 95 KIEIVGTNIAT 105 (184)
Q Consensus 95 ~V~~~~~~~~~ 105 (184)
+|++++.....
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2dnm_A 86 RVQVARYGRRD 96 (103)
T ss_dssp EEEECSSCCSC
T ss_pred EEEECCcCCCC
Confidence 99999865443
No 12
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2e-21 Score=133.51 Aligned_cols=91 Identities=26% Similarity=0.400 Sum_probs=83.7
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 14 AGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
...+....+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 6 SGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp SCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3445666788999999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred eEEEEEeeCCCC
Q 030010 93 PMKIEIVGTNIA 104 (184)
Q Consensus 93 ~i~V~~~~~~~~ 104 (184)
.|+|+++.+...
T Consensus 86 ~l~v~~a~~~~~ 97 (105)
T 1x5u_A 86 PIRVNKASAHNK 97 (105)
T ss_dssp BCEEEETTTTSC
T ss_pred EEEEEECCCCCc
Confidence 999999976543
No 13
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.3e-21 Score=134.87 Aligned_cols=90 Identities=24% Similarity=0.389 Sum_probs=81.9
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 14 AGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
+..+....+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.+++ .|.++
T Consensus 8 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~ 86 (116)
T 2cqd_A 8 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR 86 (116)
T ss_dssp CCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE
T ss_pred CCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCE
Confidence 3445666778999999999999999999999999999999999998 889999999999999999999999998 89999
Q ss_pred eEEEEEeeCCCC
Q 030010 93 PMKIEIVGTNIA 104 (184)
Q Consensus 93 ~i~V~~~~~~~~ 104 (184)
.|+|+++.....
T Consensus 87 ~l~V~~a~~~~~ 98 (116)
T 2cqd_A 87 KANVNLAYLGAK 98 (116)
T ss_dssp ECEEEESTTTCC
T ss_pred EEEEEEcccCCC
Confidence 999999976443
No 14
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.1e-21 Score=130.18 Aligned_cols=84 Identities=24% Similarity=0.511 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
..++++|||+|||..+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.|+.|+|++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 3568999999999999999999999999999999999998 789999999999999999999999999999999999999
Q ss_pred eeCCC
Q 030010 99 VGTNI 103 (184)
Q Consensus 99 ~~~~~ 103 (184)
+.++.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 97643
No 15
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.2e-21 Score=132.97 Aligned_cols=89 Identities=24% Similarity=0.397 Sum_probs=82.7
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
......+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34556778999999999999999999999999999999999997 89999999999999999999999999999999999
Q ss_pred EEEEeeCCCC
Q 030010 95 KIEIVGTNIA 104 (184)
Q Consensus 95 ~V~~~~~~~~ 104 (184)
+|+++.+...
T Consensus 88 ~v~~a~~~~~ 97 (103)
T 2cq0_A 88 NVEWAKPSTN 97 (103)
T ss_dssp EEEESSCCCC
T ss_pred EEEECCCCCC
Confidence 9999987544
No 16
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=130.71 Aligned_cols=88 Identities=26% Similarity=0.440 Sum_probs=82.0
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
......+.++|||+|||+.+++++|+++|++||.|..|.|+.++++++++||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 10 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 10 RYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44556678999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred EEEeeCCC
Q 030010 96 IEIVGTNI 103 (184)
Q Consensus 96 V~~~~~~~ 103 (184)
|+++.++.
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 99998644
No 17
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=2.2e-21 Score=128.74 Aligned_cols=83 Identities=18% Similarity=0.343 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
..+.++|||+|||.++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 4568899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred eeCC
Q 030010 99 VGTN 102 (184)
Q Consensus 99 ~~~~ 102 (184)
++++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9764
No 18
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=1.6e-21 Score=138.34 Aligned_cols=89 Identities=26% Similarity=0.408 Sum_probs=82.3
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
.+....+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.|+.|
T Consensus 15 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 15 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 35566678999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EEEEeeCCCC
Q 030010 95 KIEIVGTNIA 104 (184)
Q Consensus 95 ~V~~~~~~~~ 104 (184)
+|+++.+...
T Consensus 95 ~v~~a~~~~~ 104 (126)
T 3ex7_B 95 SVDWCFVRGP 104 (126)
T ss_dssp EEEESEESSS
T ss_pred EEEEecCCCC
Confidence 9999986543
No 19
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.4e-21 Score=133.69 Aligned_cols=90 Identities=22% Similarity=0.351 Sum_probs=82.5
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
......+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.++.|
T Consensus 5 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 5 SSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp SSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred cCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34455678999999999999999999999999999999999987 88999999999999999999999999999999999
Q ss_pred EEEEeeCCCCC
Q 030010 95 KIEIVGTNIAT 105 (184)
Q Consensus 95 ~V~~~~~~~~~ 105 (184)
+|+++++....
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2cqb_A 85 RVNLAKPMRIK 95 (102)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999875543
No 20
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.86 E-value=1.7e-21 Score=136.67 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=78.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
+....+.++|||+|||+++++++|+++|++||.|..|+|+.++ ++++++||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4556678999999999999999999999999999999999987 889999999999999999999999999999999999
Q ss_pred EEEee
Q 030010 96 IEIVG 100 (184)
Q Consensus 96 V~~~~ 100 (184)
|++++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99874
No 21
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.86 E-value=4e-21 Score=130.80 Aligned_cols=87 Identities=22% Similarity=0.466 Sum_probs=80.7
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEE--------EEEEeCC-CCCcceEEEEEecCHHHHHHHHHHh
Q 030010 14 AGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKR--------YSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRY 84 (184)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~--------v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l 84 (184)
...+.+..+.++|||+|||+++++++|+++|++||.|.. |.|+.++ +++++|||||+|.+.++|++||+.|
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 4 HHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp SCSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 344566677899999999999999999999999999999 9999997 8999999999999999999999999
Q ss_pred CCCccCCceEEEEEee
Q 030010 85 NNVQLDGKPMKIEIVG 100 (184)
Q Consensus 85 ~g~~~~g~~i~V~~~~ 100 (184)
|+..|.|+.|+|++++
T Consensus 84 ~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 84 DGKEFSGNPIKVSFAT 99 (99)
T ss_dssp TTCBSSSSBCEEEECC
T ss_pred CCCEeCCcEEEEEecC
Confidence 9999999999999874
No 22
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5.8e-21 Score=130.86 Aligned_cols=89 Identities=26% Similarity=0.413 Sum_probs=82.1
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
......+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++++++||||+|.+.++|++||+.||+..|.++.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3455667899999999999999999999999999999999998 889999999999999999999999999999999999
Q ss_pred EEEeeCCCCC
Q 030010 96 IEIVGTNIAT 105 (184)
Q Consensus 96 V~~~~~~~~~ 105 (184)
|+++.+....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2d9p_A 87 VALAQRKEER 96 (103)
T ss_dssp EEECSSCCCC
T ss_pred EEEecccccC
Confidence 9999875543
No 23
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.7e-21 Score=132.42 Aligned_cols=88 Identities=26% Similarity=0.411 Sum_probs=81.8
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
.+....++++|||+|||+.+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.|+.|
T Consensus 16 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 16 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp CBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 44555678999999999999999999999999999999999998 79999999999999999999999999999999999
Q ss_pred EEEEeeCCC
Q 030010 95 KIEIVGTNI 103 (184)
Q Consensus 95 ~V~~~~~~~ 103 (184)
+|+++.++.
T Consensus 96 ~V~~a~~~~ 104 (106)
T 1p27_B 96 SVDWCFVRG 104 (106)
T ss_dssp EEEESEESS
T ss_pred EEEeecCCC
Confidence 999998754
No 24
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1e-20 Score=129.68 Aligned_cols=92 Identities=22% Similarity=0.458 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 030010 14 AGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
+..+....+.++|||+|||+++++++|+++|++||.|..|.|+.++.. +++||||+|.+.++|++||+.||+..|.|+.
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 6 SGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 344566777899999999999999999999999999999999988754 7899999999999999999999999999999
Q ss_pred EEEEEeeCCCCCC
Q 030010 94 MKIEIVGTNIATR 106 (184)
Q Consensus 94 i~V~~~~~~~~~~ 106 (184)
|+|+++.++....
T Consensus 85 l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 85 IEVNNATARVMTN 97 (103)
T ss_dssp CEEEECCSSCCCC
T ss_pred EEEEEcccCCCCC
Confidence 9999998765543
No 25
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.1e-21 Score=130.13 Aligned_cols=88 Identities=30% Similarity=0.445 Sum_probs=81.5
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 14 AGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
........+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.++
T Consensus 6 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 6 SGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3445666778999999999999999999999999999999999998 789999999999999999999999999999999
Q ss_pred eEEEEEeeC
Q 030010 93 PMKIEIVGT 101 (184)
Q Consensus 93 ~i~V~~~~~ 101 (184)
.|+|++++.
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999864
No 26
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.86 E-value=8.8e-21 Score=130.31 Aligned_cols=87 Identities=24% Similarity=0.333 Sum_probs=80.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC---ceEE
Q 030010 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDG---KPMK 95 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g---~~i~ 95 (184)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++++++++||||+|.+.++|++||+.||+..|.+ +.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3456899999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred EEEeeCCCCC
Q 030010 96 IEIVGTNIAT 105 (184)
Q Consensus 96 V~~~~~~~~~ 105 (184)
|.++.+....
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999876543
No 27
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.86 E-value=4.3e-21 Score=132.29 Aligned_cols=85 Identities=58% Similarity=0.979 Sum_probs=80.0
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
.+....+.++|||+|||+.+++++|+++|++||.|..|.|+.++++++++||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 22 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 22 GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp --CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 46677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEee
Q 030010 96 IEIVG 100 (184)
Q Consensus 96 V~~~~ 100 (184)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 28
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=130.80 Aligned_cols=88 Identities=24% Similarity=0.387 Sum_probs=79.2
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 030010 14 AGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
+..+....+.++|||+|||+.+++++|+++|++||.|..|.|+.++++++++||||+|.+.++|++||+.||+..|.|+.
T Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 7 GMFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp -----CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 33456667789999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred EEEEEeeC
Q 030010 94 MKIEIVGT 101 (184)
Q Consensus 94 i~V~~~~~ 101 (184)
|+|++++.
T Consensus 87 l~V~~a~~ 94 (95)
T 2ywk_A 87 INVSGPSS 94 (95)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 99999863
No 29
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=7.5e-21 Score=130.38 Aligned_cols=89 Identities=18% Similarity=0.397 Sum_probs=81.6
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 14 AGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
...+.+..+.++|||+|||+++++++|+++|++|| |..|.|+.++ ++++++||||+|.+.++|++|| .||+..|.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 83 (103)
T 2dng_A 6 SGKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR 83 (103)
T ss_dssp CCCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe
Confidence 44566677889999999999999999999999996 9999999998 7999999999999999999999 8999999999
Q ss_pred eEEEEEeeCCCC
Q 030010 93 PMKIEIVGTNIA 104 (184)
Q Consensus 93 ~i~V~~~~~~~~ 104 (184)
.|+|+++.+...
T Consensus 84 ~l~V~~a~~~~~ 95 (103)
T 2dng_A 84 SLRVDIAEGRKQ 95 (103)
T ss_dssp ECEEEECCCCCC
T ss_pred EEEEEEecCCCC
Confidence 999999986443
No 30
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=3.2e-21 Score=129.86 Aligned_cols=87 Identities=26% Similarity=0.445 Sum_probs=80.2
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 14 AGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
+.......+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.|+
T Consensus 7 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 7 GMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp CCCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 3345556678999999999999999999999999999999999988 788999999999999999999999999999999
Q ss_pred eEEEEEee
Q 030010 93 PMKIEIVG 100 (184)
Q Consensus 93 ~i~V~~~~ 100 (184)
.|+|++++
T Consensus 87 ~l~v~~ak 94 (94)
T 2e5h_A 87 VIKASIAI 94 (94)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999974
No 31
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=8.3e-21 Score=130.77 Aligned_cols=90 Identities=22% Similarity=0.430 Sum_probs=82.8
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeC-C-CCCcceEEEEEecCHHHHHHHHHHh-CCCccCCc
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYD-R-SGRSKGTAEVVYSRRADAVAAVKRY-NNVQLDGK 92 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~-~-~~~~~g~afV~F~~~e~a~~Ai~~l-~g~~~~g~ 92 (184)
.+....+.++|||+|||+++++++|+++|++||.|..|.|+.+ + ++++++||||+|.+.++|++||+.| |+..|.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 4556677899999999999999999999999999999999998 5 8899999999999999999999999 99999999
Q ss_pred eEEEEEeeCCCCC
Q 030010 93 PMKIEIVGTNIAT 105 (184)
Q Consensus 93 ~i~V~~~~~~~~~ 105 (184)
.|+|+++.+....
T Consensus 88 ~l~v~~a~~~~~~ 100 (107)
T 2cph_A 88 RLVLEWADSEVTV 100 (107)
T ss_dssp BCEEEECCCCCCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999999875543
No 32
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.86 E-value=1.3e-20 Score=135.72 Aligned_cols=86 Identities=19% Similarity=0.321 Sum_probs=80.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
....+.++|||+|||.++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345567999999999999999999999999999999999998 7899999999999999999999999999999999999
Q ss_pred EEeeCCC
Q 030010 97 EIVGTNI 103 (184)
Q Consensus 97 ~~~~~~~ 103 (184)
+++++..
T Consensus 117 ~~a~~~~ 123 (139)
T 1u6f_A 117 ALAASGH 123 (139)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9998643
No 33
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.86 E-value=2.4e-21 Score=138.51 Aligned_cols=90 Identities=30% Similarity=0.444 Sum_probs=83.1
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 14 AGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
........+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.|+
T Consensus 37 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 37 VGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CCCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3345667788999999999999999999999999999999999998 789999999999999999999999999999999
Q ss_pred eEEEEEeeCCC
Q 030010 93 PMKIEIVGTNI 103 (184)
Q Consensus 93 ~i~V~~~~~~~ 103 (184)
.|+|+++.++.
T Consensus 117 ~l~V~~a~~~~ 127 (129)
T 2kxn_B 117 RIRVDFSITKR 127 (129)
T ss_dssp CCEESCCSSSS
T ss_pred EEEEEEecCCC
Confidence 99999998654
No 34
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-20 Score=132.29 Aligned_cols=85 Identities=27% Similarity=0.413 Sum_probs=79.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
..++.++|||+|||+++++++|+++|++||.|..|.|+.++++++++||||+|.+.++|++||+.||+..|.|+.|+|++
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34668999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eeCCC
Q 030010 99 VGTNI 103 (184)
Q Consensus 99 ~~~~~ 103 (184)
+++..
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98644
No 35
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=7.1e-21 Score=125.24 Aligned_cols=80 Identities=21% Similarity=0.448 Sum_probs=76.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 030010 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
+++|||+|||..+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++|++.||+..|.|+.|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 4689999999999999999999999999999999997 899999999999999999999999999999999999999986
Q ss_pred C
Q 030010 102 N 102 (184)
Q Consensus 102 ~ 102 (184)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 36
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=7.9e-21 Score=131.72 Aligned_cols=90 Identities=23% Similarity=0.416 Sum_probs=82.9
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhC------CCc
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYN------NVQ 88 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~------g~~ 88 (184)
.+....+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.|| +..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 8 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 34566778999999999999999999999999999999999998 78999999999999999999999999 999
Q ss_pred cCCceEEEEEeeCCCCC
Q 030010 89 LDGKPMKIEIVGTNIAT 105 (184)
Q Consensus 89 ~~g~~i~V~~~~~~~~~ 105 (184)
|.|+.|+|.++.++...
T Consensus 88 ~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSSCEEEEECCCCCCCC
T ss_pred EcCEEEEEEECCCCccC
Confidence 99999999999875543
No 37
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=7.4e-21 Score=130.47 Aligned_cols=88 Identities=17% Similarity=0.294 Sum_probs=81.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhh-CCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCc-cCCceE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSE-VGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQ-LDGKPM 94 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~-~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~-~~g~~i 94 (184)
.....+.++|||+|||+++++++|+++|++ ||.|..|.|+.++++++++||||+|.+.++|++||+.||+.. |.|+.|
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 3 SGSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 345567899999999999999999999999 999999999999988999999999999999999999999999 999999
Q ss_pred EEEEeeCCCC
Q 030010 95 KIEIVGTNIA 104 (184)
Q Consensus 95 ~V~~~~~~~~ 104 (184)
+|+++.+...
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999876544
No 38
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=3.1e-21 Score=127.54 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 030010 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++|++.||+..|.|+.|+|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999999886 88899999999999999999999999999999999999
Q ss_pred Eee
Q 030010 98 IVG 100 (184)
Q Consensus 98 ~~~ 100 (184)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 39
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=5.1e-22 Score=133.65 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=75.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCC-CeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhC-CCccCCceEEEEEe
Q 030010 23 GTKLYISNLDYGVSNEDIKELFSEVG-DLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYN-NVQLDGKPMKIEIV 99 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G-~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~-g~~~~g~~i~V~~~ 99 (184)
+.+|||+|||+++||++|+++|++|| .|..|+|+.++ +++++|||||+|.+.++|++||+.++ +..|.|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57899999999999999999999999 89999999998 89999999999999999999999875 57899999999999
Q ss_pred eCCCC
Q 030010 100 GTNIA 104 (184)
Q Consensus 100 ~~~~~ 104 (184)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86543
No 40
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.85 E-value=1e-20 Score=129.73 Aligned_cols=85 Identities=25% Similarity=0.362 Sum_probs=77.1
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 030010 14 AGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
+..+....+.++|||+|||+.+++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|.++.
T Consensus 2 s~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 2 SSGSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCCCCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 4456677788999999999999999999999999999999987 459999999999999999999999999999
Q ss_pred EEEEEeeCCCCC
Q 030010 94 MKIEIVGTNIAT 105 (184)
Q Consensus 94 i~V~~~~~~~~~ 105 (184)
|+|+++++....
T Consensus 75 l~v~~a~~~~~~ 86 (103)
T 2dgu_A 75 IEIVFAKPPDQK 86 (103)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEcCCCccc
Confidence 999999875543
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=6.8e-21 Score=131.08 Aligned_cols=88 Identities=23% Similarity=0.414 Sum_probs=80.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCcc---CCc
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQL---DGK 92 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~---~g~ 92 (184)
+....+.++|||+|||.++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..+ .++
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 4456678999999999999999999999999999999999988 799999999999999999999999999887 889
Q ss_pred eEEEEEeeCCCC
Q 030010 93 PMKIEIVGTNIA 104 (184)
Q Consensus 93 ~i~V~~~~~~~~ 104 (184)
.|+|.++.+...
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999986543
No 42
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.85 E-value=8.9e-21 Score=127.19 Aligned_cols=87 Identities=22% Similarity=0.395 Sum_probs=79.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
+++..+.++|||+|||+++++++|+++|++||.|..|.|+.+ ++++++||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 2 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 2 SSGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CCSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345567899999999999999999999999999999999874 7788999999999999999999999999999999999
Q ss_pred EEeeCCCC
Q 030010 97 EIVGTNIA 104 (184)
Q Consensus 97 ~~~~~~~~ 104 (184)
+++++...
T Consensus 81 ~~a~~~~~ 88 (92)
T 2dgv_A 81 RIDRNASG 88 (92)
T ss_dssp EECSCCSS
T ss_pred EEcCCCCC
Confidence 99986543
No 43
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=5.9e-21 Score=129.84 Aligned_cols=86 Identities=19% Similarity=0.271 Sum_probs=79.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeE-EEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCce--
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLK-RYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP-- 93 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~-~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~-- 93 (184)
....+.++|||+|||+++++++|+++|++||.|. .|+|+.++ ++++++||||+|.+.++|++||+.||+..|.++.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 4456789999999999999999999999999999 99999998 8999999999999999999999999999999999
Q ss_pred --EEEEEeeCCC
Q 030010 94 --MKIEIVGTNI 103 (184)
Q Consensus 94 --i~V~~~~~~~ 103 (184)
|+|+++++..
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999987543
No 44
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.85 E-value=1.7e-20 Score=158.88 Aligned_cols=85 Identities=20% Similarity=0.443 Sum_probs=79.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
..+.++|||+|||+.||+++|+.+|++||.|+.|.|+.++ +++++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4557899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred eeCCCC
Q 030010 99 VGTNIA 104 (184)
Q Consensus 99 ~~~~~~ 104 (184)
+.+...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 986544
No 45
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=1.1e-21 Score=131.55 Aligned_cols=82 Identities=24% Similarity=0.319 Sum_probs=71.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCC--CeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 030010 24 TKLYISNLDYGVSNEDIKELFSEVG--DLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G--~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
.+|||+|||+++++++|+++|++|| .|..|.|+.++ +++++|||||+|.+.++|++||+.||+..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998 89999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 030010 101 TNIAT 105 (184)
Q Consensus 101 ~~~~~ 105 (184)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76544
No 46
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.2e-21 Score=132.49 Aligned_cols=88 Identities=24% Similarity=0.472 Sum_probs=81.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeE--------EEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCC
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLK--------RYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNV 87 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~--------~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~ 87 (184)
+....+.++|||+|||+.+++++|+++|++||.|. .|.|+.++ ++++++||||+|.+.++|++||+.||+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 44566789999999999999999999999999998 69999996 8999999999999999999999999999
Q ss_pred ccCCceEEEEEeeCCCC
Q 030010 88 QLDGKPMKIEIVGTNIA 104 (184)
Q Consensus 88 ~~~g~~i~V~~~~~~~~ 104 (184)
.|.|+.|+|+++++...
T Consensus 89 ~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPP 105 (113)
T ss_dssp EETTEECEEECSSCCCC
T ss_pred ccCCCEEEEEECCCCCC
Confidence 99999999999986544
No 47
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-20 Score=129.87 Aligned_cols=83 Identities=23% Similarity=0.384 Sum_probs=75.8
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC---
Q 030010 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDG--- 91 (184)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g--- 91 (184)
..+++....++|||+|||+++++++|+++|++||.|..|.|+.+ +||||+|.+.++|++||+.||+..|.+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 7 GGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp SSCCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 34566677999999999999999999999999999999999865 799999999999999999999999999
Q ss_pred --ceEEEEEeeCCC
Q 030010 92 --KPMKIEIVGTNI 103 (184)
Q Consensus 92 --~~i~V~~~~~~~ 103 (184)
+.|+|+++.+..
T Consensus 81 ~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 81 ETAYIRVKVDGPRS 94 (108)
T ss_dssp CEEEEEEEESSCCS
T ss_pred cceEEEEEeCCCCC
Confidence 999999998643
No 48
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.5e-20 Score=127.62 Aligned_cols=88 Identities=24% Similarity=0.290 Sum_probs=79.8
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
......+.++|||+|||+.+++++|+++|++||.|..|.|+.++.. .++||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 4556677899999999999999999999999999999999988633 588999999999999999999999999999999
Q ss_pred EEEeeCCCC
Q 030010 96 IEIVGTNIA 104 (184)
Q Consensus 96 V~~~~~~~~ 104 (184)
|++++++..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 999987543
No 49
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.85 E-value=1.6e-20 Score=133.00 Aligned_cols=93 Identities=54% Similarity=0.919 Sum_probs=85.4
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 030010 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
...+...++++|||+|||+.+++++|+++|++||.|..|.|+.++++++++||||+|.+.++|++||+.||+..|.|+.|
T Consensus 27 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 106 (124)
T 2kt5_A 27 GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 106 (124)
T ss_dssp CCCCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34456778899999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEEEeeCCCCCCC
Q 030010 95 KIEIVGTNIATRT 107 (184)
Q Consensus 95 ~V~~~~~~~~~~~ 107 (184)
+|+++.+.....+
T Consensus 107 ~V~~a~~~~~~~~ 119 (124)
T 2kt5_A 107 DIQLVASQIDLEH 119 (124)
T ss_dssp EEEEECCTTCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999988665544
No 50
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.2e-21 Score=129.30 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEE-EEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRY-SIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v-~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
.++++|||+|||+++++++|+++|++||.|..| .|+.++ ++++++||||+|.+.++|++||+.||+..|.|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 468999999999999999999999999999999 999986 889999999999999999999999999999999999999
Q ss_pred eeCCCC
Q 030010 99 VGTNIA 104 (184)
Q Consensus 99 ~~~~~~ 104 (184)
+.+...
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 986443
No 51
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=9e-21 Score=128.36 Aligned_cols=84 Identities=25% Similarity=0.418 Sum_probs=79.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
++++|||+|||..+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.|+.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 57899999999999999999999999999999999998 78999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 030010 101 TNIAT 105 (184)
Q Consensus 101 ~~~~~ 105 (184)
+....
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 76543
No 52
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.3e-20 Score=128.40 Aligned_cols=93 Identities=19% Similarity=0.284 Sum_probs=81.1
Q ss_pred CCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCc
Q 030010 9 FPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQ 88 (184)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~ 88 (184)
.+......+....+.++|||+|||+++++++|+++|++||.|..|.|.. ++.+++||||+|.+.++|++||+.||+..
T Consensus 8 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 85 (109)
T 1x4a_A 8 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYD 85 (109)
T ss_dssp CCCCCCSSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCE
T ss_pred cCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 3444445566777889999999999999999999999999999999854 34578999999999999999999999999
Q ss_pred cCCceEEEEEeeCCC
Q 030010 89 LDGKPMKIEIVGTNI 103 (184)
Q Consensus 89 ~~g~~i~V~~~~~~~ 103 (184)
|.++.|+|+++++..
T Consensus 86 ~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 86 YDGYRLRVEFPRSGR 100 (109)
T ss_dssp ETTEECEEECCCCCC
T ss_pred ECCeEEEEEEcccCC
Confidence 999999999987643
No 53
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.85 E-value=6.8e-21 Score=140.41 Aligned_cols=81 Identities=17% Similarity=0.365 Sum_probs=76.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCC--CeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVG--DLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G--~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
..++|||+|||+++++++|+++|++|| .|..|+|+.++ +++++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 99999999998 899999999999999999999999999999999999999
Q ss_pred eeCC
Q 030010 99 VGTN 102 (184)
Q Consensus 99 ~~~~ 102 (184)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8753
No 54
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1e-20 Score=128.29 Aligned_cols=86 Identities=20% Similarity=0.333 Sum_probs=77.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHH----HHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIK----ELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~----~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
..+....++|||+|||+.+++++|+ ++|++||.|..|.|+.++.. ++||||+|.+.++|++||+.||+..|.|+
T Consensus 3 s~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 3 SGSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp CCCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3455678999999999999999999 99999999999999988844 78999999999999999999999999999
Q ss_pred eEEEEEeeCCCC
Q 030010 93 PMKIEIVGTNIA 104 (184)
Q Consensus 93 ~i~V~~~~~~~~ 104 (184)
.|+|+++++...
T Consensus 81 ~l~V~~a~~~~~ 92 (96)
T 2dgx_A 81 KILVSLATGASG 92 (96)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEEcCCCCC
Confidence 999999976443
No 55
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=2.4e-21 Score=131.50 Aligned_cols=84 Identities=15% Similarity=0.242 Sum_probs=76.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCC--eEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCC----ccC
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGD--LKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNV----QLD 90 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~--i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~----~~~ 90 (184)
.....-.+|||+|||+++|+++|+++|++||. |..|+|+.|+ +++++|||||+|.+.++|++||+.||+. .|+
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 34455678999999999999999999999995 5789999998 8999999999999999999999999996 489
Q ss_pred CceEEEEEeeC
Q 030010 91 GKPMKIEIVGT 101 (184)
Q Consensus 91 g~~i~V~~~~~ 101 (184)
|++|.|++++.
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999874
No 56
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=130.39 Aligned_cols=86 Identities=24% Similarity=0.501 Sum_probs=80.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
+....+.++|||+|||..+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4455678999999999999999999999999999999999987 889999999999999999999999999999999999
Q ss_pred EEEeeCC
Q 030010 96 IEIVGTN 102 (184)
Q Consensus 96 V~~~~~~ 102 (184)
|++++++
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9998764
No 57
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=8.2e-21 Score=132.96 Aligned_cols=82 Identities=21% Similarity=0.363 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
..++|||+|||+++++++|+++|++||.|..|+|+.++. .++|||||+|.+.++|++||+.||+..|.|+.|+|.++.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 357899999999999999999999999999999998863 4789999999999999999999999999999999999876
Q ss_pred CCC
Q 030010 102 NIA 104 (184)
Q Consensus 102 ~~~ 104 (184)
...
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
No 58
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=128.17 Aligned_cols=85 Identities=27% Similarity=0.481 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCC--C--CcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRS--G--RSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~--~--~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++. + ++++||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5689999999999999999999999999999999988763 3 78999999999999999999999999999999999
Q ss_pred EEeeCCCCC
Q 030010 97 EIVGTNIAT 105 (184)
Q Consensus 97 ~~~~~~~~~ 105 (184)
+++.+....
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999875543
No 59
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1e-20 Score=131.15 Aligned_cols=88 Identities=24% Similarity=0.406 Sum_probs=81.6
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
.+....+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||..||+..|.|+.|
T Consensus 19 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 19 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp CBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34555678999999999999999999999999999999999987 88999999999999999999999999999999999
Q ss_pred EEEEeeCCC
Q 030010 95 KIEIVGTNI 103 (184)
Q Consensus 95 ~V~~~~~~~ 103 (184)
+|+++.+..
T Consensus 99 ~V~~a~~~~ 107 (110)
T 1oo0_B 99 QVDWCFVKG 107 (110)
T ss_dssp EEEESEESS
T ss_pred EEEEcccCC
Confidence 999998654
No 60
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=125.03 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=79.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
.+.....++|||+|||+.+++++|+++|++| .|..|.|+.+.+++++|||||+|.+.++|++||+ ||+..|.|+.|+|
T Consensus 4 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 3455678999999999999999999999999 9999999999889999999999999999999999 9999999999999
Q ss_pred EEeeCCC
Q 030010 97 EIVGTNI 103 (184)
Q Consensus 97 ~~~~~~~ 103 (184)
.++.+..
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9998653
No 61
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=128.97 Aligned_cols=87 Identities=18% Similarity=0.325 Sum_probs=79.7
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-C-CCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-S-GRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~-~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
.+.+..+.++|||+|||+.+++++|+++|++|| |..|.|+.++ + +++++||||+|.+.++|++|| .||+..|.++.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 8 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp CCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 345566789999999999999999999999999 9999999998 5 899999999999999999999 99999999999
Q ss_pred EEEEEeeCCCC
Q 030010 94 MKIEIVGTNIA 104 (184)
Q Consensus 94 i~V~~~~~~~~ 104 (184)
|+|+++.++..
T Consensus 86 l~V~~a~~~~~ 96 (104)
T 1wi8_A 86 IRVDVADQAQD 96 (104)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEEccCCCC
Confidence 99999986443
No 62
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=129.74 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=82.1
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 030010 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
.......+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+. ++..|.|+.
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (105)
T 2dh8_A 8 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN 86 (105)
T ss_dssp CCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE
T ss_pred CCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 345667788999999999999999999999999999999999997 889999999999999999999998 999999999
Q ss_pred EEEEEeeCCCC
Q 030010 94 MKIEIVGTNIA 104 (184)
Q Consensus 94 i~V~~~~~~~~ 104 (184)
|+|+++.++..
T Consensus 87 l~V~~a~~~~~ 97 (105)
T 2dh8_A 87 IDPKPCTPRGM 97 (105)
T ss_dssp EBCCCSCCSSC
T ss_pred EEEEEccCCCC
Confidence 99999886554
No 63
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.3e-20 Score=126.03 Aligned_cols=90 Identities=21% Similarity=0.376 Sum_probs=81.4
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 14 AGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
+.......+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+ +++.|.|+
T Consensus 6 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~ 83 (103)
T 2cqg_A 6 SGVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGR 83 (103)
T ss_dssp SSCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTE
T ss_pred CCCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCe
Confidence 3456667778999999999999999999999999999999999998 79999999999999999999998 57899999
Q ss_pred eEEEEEeeCCCCC
Q 030010 93 PMKIEIVGTNIAT 105 (184)
Q Consensus 93 ~i~V~~~~~~~~~ 105 (184)
.|.|+++.++...
T Consensus 84 ~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 84 WCDCKLPNSKQSQ 96 (103)
T ss_dssp EEEEECCCTTCCC
T ss_pred EEEEEecCCCCcC
Confidence 9999999876543
No 64
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.9e-21 Score=131.33 Aligned_cols=92 Identities=18% Similarity=0.370 Sum_probs=80.0
Q ss_pred CCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 030010 10 PVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQL 89 (184)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~ 89 (184)
++..+.......+.++|||+|||..+++++|+++|++||.|..|.|+.++. .+++||||+|.+.++|++|++.||+..|
T Consensus 16 ~~~~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~ 94 (109)
T 2err_A 16 PRGSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVV 94 (109)
T ss_dssp ------CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEE
T ss_pred CCCCCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 444556677778899999999999999999999999999999999988764 4789999999999999999999999999
Q ss_pred CCceEEEEEeeCC
Q 030010 90 DGKPMKIEIVGTN 102 (184)
Q Consensus 90 ~g~~i~V~~~~~~ 102 (184)
.|+.|+|++++++
T Consensus 95 ~g~~l~V~~a~~~ 107 (109)
T 2err_A 95 EGRKIEVNNATAR 107 (109)
T ss_dssp TTEECEEEECCCS
T ss_pred CCEEEEEEECCCC
Confidence 9999999998764
No 65
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=8.9e-21 Score=128.71 Aligned_cols=85 Identities=21% Similarity=0.267 Sum_probs=77.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
.......++|||+|||+++++++|+++|++||.|..+.++.++ ++++++||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 9 SSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp CCCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3455667999999999999999999999999999888777776 889999999999999999999999999999999999
Q ss_pred EEEeeC
Q 030010 96 IEIVGT 101 (184)
Q Consensus 96 V~~~~~ 101 (184)
|+++..
T Consensus 89 V~~a~~ 94 (98)
T 2cqp_A 89 LVLGSG 94 (98)
T ss_dssp EEESSC
T ss_pred EEEcCC
Confidence 999874
No 66
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.2e-21 Score=132.75 Aligned_cols=84 Identities=24% Similarity=0.358 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
....++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++|| .||+..|.|+.|+|++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 3456899999999999999999999999999999999998 7899999999999999999999 9999999999999999
Q ss_pred eeCCCC
Q 030010 99 VGTNIA 104 (184)
Q Consensus 99 ~~~~~~ 104 (184)
+.+...
T Consensus 101 a~~~~~ 106 (114)
T 2cq4_A 101 SQAEKN 106 (114)
T ss_dssp HHHHHH
T ss_pred cCCCcc
Confidence 886543
No 67
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.2e-20 Score=126.83 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=76.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
.......++|||+|||+.+++++|+++|++||.| .|.|+.+++++++|||||+|.+.++|++||+ +|+..|.++.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 4556678999999999999999999999999955 9999999999999999999999999999994 7999999999999
Q ss_pred EEeeC
Q 030010 97 EIVGT 101 (184)
Q Consensus 97 ~~~~~ 101 (184)
.++.+
T Consensus 87 ~~~~~ 91 (102)
T 1wez_A 87 FLNST 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 98864
No 68
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.83 E-value=9.6e-21 Score=135.49 Aligned_cols=92 Identities=16% Similarity=0.234 Sum_probs=83.4
Q ss_pred CCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEE--EEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCC-
Q 030010 12 QQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKR--YSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNV- 87 (184)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~--v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~- 87 (184)
.....+....+.++|||+|||+++++++|+++|++||.|.. |+|+.++ +++++|||||+|.+. +|++||+.||+.
T Consensus 12 ~~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~ 90 (131)
T 2m2b_A 12 SQGSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALH 90 (131)
T ss_dssp CCCCCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCC
Confidence 34445666678899999999999999999999999999976 9999999 999999999999999 999999999999
Q ss_pred ---ccCCceEEEEEeeCCCC
Q 030010 88 ---QLDGKPMKIEIVGTNIA 104 (184)
Q Consensus 88 ---~~~g~~i~V~~~~~~~~ 104 (184)
.|.|+.|+|+++++...
T Consensus 91 ~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 91 PPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CSCCGGGCCCCCEECCCSCC
T ss_pred CCccCCCEEEEEEECCCCCC
Confidence 99999999999987543
No 69
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=4.5e-20 Score=122.56 Aligned_cols=82 Identities=22% Similarity=0.476 Sum_probs=74.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
+....+.++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||+ +++..|.|+.|.
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 4456678999999999999999999999999999999999998 89999999999999999999996 588899999999
Q ss_pred EEEe
Q 030010 96 IEIV 99 (184)
Q Consensus 96 V~~~ 99 (184)
|+++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 70
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=124.19 Aligned_cols=82 Identities=29% Similarity=0.391 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCC-cceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGR-SKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~-~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
..++|||+|||.++++++|+++|++||.|..|.|+.++ ++. +++||||+|.+.++|++|++.||+..|.|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 57899999999999999999999999999999998887 444 8999999999999999999999999999999999999
Q ss_pred eCCC
Q 030010 100 GTNI 103 (184)
Q Consensus 100 ~~~~ 103 (184)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 71
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=3.4e-20 Score=123.51 Aligned_cols=79 Identities=27% Similarity=0.535 Sum_probs=75.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 030010 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++|+ .||+..|.|+.|+|+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 5799999999999999999999999999999999998 8999999999999999999999 9999999999999999876
Q ss_pred C
Q 030010 102 N 102 (184)
Q Consensus 102 ~ 102 (184)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 72
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=5.1e-21 Score=130.80 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCC------CCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCC-c
Q 030010 21 ETGTKLYISNLDY------GVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDG-K 92 (184)
Q Consensus 21 ~~~~~l~V~nLp~------~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g-~ 92 (184)
..+++|||+|||+ .+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||+.||+..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999999998 79999999999999999999999999999999 9
Q ss_pred eEEEEEeeCC
Q 030010 93 PMKIEIVGTN 102 (184)
Q Consensus 93 ~i~V~~~~~~ 102 (184)
.|+|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998753
No 73
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.83 E-value=5.3e-21 Score=130.64 Aligned_cols=91 Identities=16% Similarity=0.306 Sum_probs=73.8
Q ss_pred CCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC--CCCcceEEEEEecCHHHHHHHHHHhCCC
Q 030010 10 PVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR--SGRSKGTAEVVYSRRADAVAAVKRYNNV 87 (184)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~--~~~~~g~afV~F~~~e~a~~Ai~~l~g~ 87 (184)
++.....+......++|||+|||+++++++|+++|++|| |..|.|+.++ +++++|||||+|.+.++|++|| .||+.
T Consensus 6 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~ 83 (100)
T 2j76_E 6 HHHHHRSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 83 (100)
T ss_dssp --------------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC
T ss_pred CCCCCCCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC
Confidence 333444556677789999999999999999999999999 9999999886 7899999999999999999999 89999
Q ss_pred ccCCceEEEEEeeCC
Q 030010 88 QLDGKPMKIEIVGTN 102 (184)
Q Consensus 88 ~~~g~~i~V~~~~~~ 102 (184)
.|.|+.|+|+++++.
T Consensus 84 ~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 84 SLGNRRIRVDVADQA 98 (100)
T ss_dssp CBTTBCCCCEECCCS
T ss_pred EECCeEEEEEeccCC
Confidence 999999999998764
No 74
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.2e-20 Score=126.09 Aligned_cols=86 Identities=24% Similarity=0.470 Sum_probs=77.0
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 030010 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
+.+....+.++|||+|||+.+++++|+++|++||.| .|+.+.++++++||||+|.+.++|++||+.||+..|.++.|
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 7 GNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CCCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 344566678999999999999999999999999976 56666788899999999999999999999999999999999
Q ss_pred EEEEeeCCC
Q 030010 95 KIEIVGTNI 103 (184)
Q Consensus 95 ~V~~~~~~~ 103 (184)
+|+++.++.
T Consensus 84 ~v~~a~~~~ 92 (101)
T 2fc9_A 84 RLELQGPRG 92 (101)
T ss_dssp EEEECSSCC
T ss_pred EEEEcCCCC
Confidence 999998653
No 75
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-19 Score=126.17 Aligned_cols=86 Identities=21% Similarity=0.360 Sum_probs=79.1
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc------
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQL------ 89 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~------ 89 (184)
......+.++|||+|||+.+++++|+++|++||.|..|.|+.++++++++||||+|.+.++|++||+.||+..|
T Consensus 18 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 18 AKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred hcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 34555678999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred --CCceEEEEEeeC
Q 030010 90 --DGKPMKIEIVGT 101 (184)
Q Consensus 90 --~g~~i~V~~~~~ 101 (184)
.+++|.|.++.+
T Consensus 98 ~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 98 SAPTEPLLCKFSGP 111 (114)
T ss_dssp CCCSSCBEEEECCC
T ss_pred cCCCCceeEEccCC
Confidence 578899999874
No 76
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.83 E-value=4.6e-20 Score=136.87 Aligned_cols=89 Identities=24% Similarity=0.402 Sum_probs=80.8
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
.+....++++|||+|||+.+++++|+.+|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.|+.|
T Consensus 65 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 65 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp -CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456678899999999999999999999999999999999997 89999999999999999999999999999999999
Q ss_pred EEEEeeCCCC
Q 030010 95 KIEIVGTNIA 104 (184)
Q Consensus 95 ~V~~~~~~~~ 104 (184)
.|.++.+...
T Consensus 145 ~V~~a~~~~~ 154 (165)
T 1rk8_A 145 QVDWCFVKGP 154 (165)
T ss_dssp EEEESEECC-
T ss_pred EEEEecCCCC
Confidence 9999987554
No 77
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.83 E-value=5.4e-20 Score=132.35 Aligned_cols=86 Identities=24% Similarity=0.423 Sum_probs=79.1
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 14 AGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
+.......+.++|||+|||..+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.|+
T Consensus 54 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 54 GGSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp CSSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3345666778999999999999999999999999999999999997 889999999999999999999999999999999
Q ss_pred eEEEEEe
Q 030010 93 PMKIEIV 99 (184)
Q Consensus 93 ~i~V~~~ 99 (184)
.|+|+++
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999875
No 78
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8e-20 Score=125.64 Aligned_cols=86 Identities=21% Similarity=0.295 Sum_probs=78.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEE-EEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKR-YSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~-v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
.+.....++|||+|||+.+++++|+++|++||.|.. |.|+.+.+++++|||||+|.+.++|++||+. |+..|.++.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 344567899999999999999999999999999987 8888888899999999999999999999987 99999999999
Q ss_pred EEEeeCCC
Q 030010 96 IEIVGTNI 103 (184)
Q Consensus 96 V~~~~~~~ 103 (184)
|.++....
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99987543
No 79
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=8e-20 Score=134.26 Aligned_cols=89 Identities=25% Similarity=0.405 Sum_probs=81.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
.......++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 64 ~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 64 HMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3444568999999999999999999999999999999999997 899999999999999999999999999999999999
Q ss_pred EEEeeCCCCC
Q 030010 96 IEIVGTNIAT 105 (184)
Q Consensus 96 V~~~~~~~~~ 105 (184)
|.++.+..+.
T Consensus 144 v~~a~~~~~~ 153 (158)
T 2kn4_A 144 VQMARYGRPP 153 (158)
T ss_dssp EEEECCSSCC
T ss_pred EEECCCCCCC
Confidence 9999875543
No 80
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=9.9e-21 Score=127.70 Aligned_cols=84 Identities=21% Similarity=0.263 Sum_probs=74.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
....+.++|||+|||+++++++|+++|++||.|..+.++.++ ++++++||||+|.+.++|++||+.||+..|.++.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp -----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 334456999999999999999999999999999888888777 8899999999999999999999999999999999999
Q ss_pred EEeeC
Q 030010 97 EIVGT 101 (184)
Q Consensus 97 ~~~~~ 101 (184)
+++..
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 98753
No 81
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.4e-20 Score=122.36 Aligned_cols=82 Identities=27% Similarity=0.420 Sum_probs=74.7
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
.+....+.++|||+|||+.+++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 3 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 3 SGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp CSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 45566778999999999999999999999999999999987 34999999999999999999999999999999
Q ss_pred EEEeeCCCC
Q 030010 96 IEIVGTNIA 104 (184)
Q Consensus 96 V~~~~~~~~ 104 (184)
|++++++..
T Consensus 76 V~~a~~~~~ 84 (92)
T 2dgt_A 76 VQLSTSRLR 84 (92)
T ss_dssp EEESSCCCS
T ss_pred EEEccCCCC
Confidence 999986544
No 82
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7e-21 Score=133.07 Aligned_cols=86 Identities=15% Similarity=0.249 Sum_probs=79.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCe-EEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDL-KRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i-~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
.....+.++|||+|||+.+++++|+++|++||.| ..|.|+.+++++++|||||+|.+.++|++||+. |+..|.++.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 9 GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp CSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 3445668999999999999999999999999999 889999999999999999999999999999986 99999999999
Q ss_pred EEEeeCCC
Q 030010 96 IEIVGTNI 103 (184)
Q Consensus 96 V~~~~~~~ 103 (184)
|.++.+..
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99998654
No 83
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-20 Score=129.26 Aligned_cols=87 Identities=23% Similarity=0.544 Sum_probs=80.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
....+.++|||+|||+.+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp CSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 334457899999999999999999999999999999999997 8899999999999999999999999999999999999
Q ss_pred EEeeCCCC
Q 030010 97 EIVGTNIA 104 (184)
Q Consensus 97 ~~~~~~~~ 104 (184)
+++.+...
T Consensus 83 ~~a~~~~~ 90 (104)
T 1p1t_A 83 DNAASEKN 90 (104)
T ss_dssp EETTCTTH
T ss_pred EeCCCccc
Confidence 99986544
No 84
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=120.90 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=73.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
+...+.++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|.++.|+|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 345678999999999999999999999999999999997 5799999999999999999999999999999999
Q ss_pred EeeCCCC
Q 030010 98 IVGTNIA 104 (184)
Q Consensus 98 ~~~~~~~ 104 (184)
++++...
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9986544
No 85
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.8e-20 Score=127.30 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
....++|||+|||+.+|+++|+++|++||.|..|.|+.++.++++|||||+|.+.++|++||. +++..|.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 345689999999999999999999999999999999999888899999999999999999998 8999999999999987
Q ss_pred eC
Q 030010 100 GT 101 (184)
Q Consensus 100 ~~ 101 (184)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 86
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4e-20 Score=127.35 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=73.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCC--CccCCceEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNN--VQLDGKPMK 95 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g--~~~~g~~i~ 95 (184)
....+.++|||+|||+.++|++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||+.|++ ..|.|++|+
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 34556899999999999999999999999999999999865 68999999999999999998864 789999999
Q ss_pred EEEeeCCCCC
Q 030010 96 IEIVGTNIAT 105 (184)
Q Consensus 96 V~~~~~~~~~ 105 (184)
|++++++...
T Consensus 86 V~~A~~~~~~ 95 (105)
T 1sjq_A 86 IQFSNHKELK 95 (105)
T ss_dssp BCCCSSSSCC
T ss_pred EEEcCCCCCC
Confidence 9999865443
No 87
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=5.6e-20 Score=129.34 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=79.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCC---eEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGD---LKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~---i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
.......++|||+|||+++++++|+++|+.||. |..|+|+.++.++++|||||+|.+.++|++||+ +|+..|.++.
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 344567899999999999999999999999999 899999999889999999999999999999998 9999999999
Q ss_pred EEEEEeeCCC
Q 030010 94 MKIEIVGTNI 103 (184)
Q Consensus 94 i~V~~~~~~~ 103 (184)
|+|.++....
T Consensus 90 i~V~~a~~~~ 99 (118)
T 2db1_A 90 IEVFKSHRTE 99 (118)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999987543
No 88
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.82 E-value=5.7e-21 Score=138.23 Aligned_cols=83 Identities=24% Similarity=0.388 Sum_probs=73.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
+......++|||+|||+++||++|+++|++|| |..|.|+.+++++++|||||+|.+.++|++|| .+|+..|.++.|+|
T Consensus 40 ~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 40 TVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp -----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 34556778999999999999999999999999 66999999988999999999999999999999 78999999999999
Q ss_pred EEeeC
Q 030010 97 EIVGT 101 (184)
Q Consensus 97 ~~~~~ 101 (184)
.++..
T Consensus 118 ~~a~~ 122 (139)
T 2hgn_A 118 FLNST 122 (139)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 98865
No 89
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1.8e-20 Score=134.90 Aligned_cols=90 Identities=24% Similarity=0.408 Sum_probs=82.6
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
.++...+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.|+.|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 35556678899999999999999999999999999999999988 88999999999999999999999999999999999
Q ss_pred EEEEeeCCCCC
Q 030010 95 KIEIVGTNIAT 105 (184)
Q Consensus 95 ~V~~~~~~~~~ 105 (184)
+|+++++...+
T Consensus 120 ~V~~a~~~~~~ 130 (135)
T 2lea_A 120 RVQMARYGRPP 130 (135)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999875543
No 90
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=124.09 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCC-eEEEEEE-eCC-CCCcceEEEEEecCHHHHHHHHHHhC--CCccCCceE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGD-LKRYSIH-YDR-SGRSKGTAEVVYSRRADAVAAVKRYN--NVQLDGKPM 94 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~-i~~v~i~-~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~--g~~~~g~~i 94 (184)
..+.++|||+|||+.+++++|+++|++||. |..|.|+ .++ ++++++||||+|.+.++|++||+.|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345799999999999999999999999998 9999988 666 78899999999999999999999996 589999999
Q ss_pred EEEEeeCCCCC
Q 030010 95 KIEIVGTNIAT 105 (184)
Q Consensus 95 ~V~~~~~~~~~ 105 (184)
+|+++.+....
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876553
No 91
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=7.5e-20 Score=126.90 Aligned_cols=86 Identities=21% Similarity=0.376 Sum_probs=74.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
.....+.++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||+.+ +..|.|+.|+
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 3455668999999999999999999999999999999999998 7999999999999999999999876 4999999999
Q ss_pred EEEeeCCC
Q 030010 96 IEIVGTNI 103 (184)
Q Consensus 96 V~~~~~~~ 103 (184)
|+++.+..
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99998644
No 92
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-20 Score=124.70 Aligned_cols=80 Identities=20% Similarity=0.266 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
..++++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.++.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 4568999999999999999999999999999999999997 889999999999999999999999999999999887665
Q ss_pred e
Q 030010 99 V 99 (184)
Q Consensus 99 ~ 99 (184)
.
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 93
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=1.3e-19 Score=128.05 Aligned_cols=81 Identities=31% Similarity=0.564 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
..++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++|| .||+..|.|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35899999999999999999999999999999999997 8999999999999999999999 799999999999999987
Q ss_pred CCC
Q 030010 101 TNI 103 (184)
Q Consensus 101 ~~~ 103 (184)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 94
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=123.45 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=72.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCc--cCCceE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQ--LDGKPM 94 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~--~~g~~i 94 (184)
.....++++|||+|||+.+++++|+++|++||.|..|.++. .++||||+|.+.++|++||+.|++.. |.|++|
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34556789999999999999999999999999999999874 36799999999999999999999865 789999
Q ss_pred EEEEeeCC
Q 030010 95 KIEIVGTN 102 (184)
Q Consensus 95 ~V~~~~~~ 102 (184)
.|++++.+
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999764
No 95
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.81 E-value=7.1e-20 Score=128.19 Aligned_cols=80 Identities=23% Similarity=0.375 Sum_probs=65.2
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce-
Q 030010 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP- 93 (184)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~- 93 (184)
..+++....++|||+|||+++++++|+++|++||.|..|.|+.+ +||||+|.+.++|++||+.||+.+|.|+.
T Consensus 8 ~gpp~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~ 81 (115)
T 3beg_B 8 YGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 81 (115)
T ss_dssp ---------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTS
T ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEe
Confidence 34455567899999999999999999999999999999999754 79999999999999999999999999998
Q ss_pred ----EEEEEee
Q 030010 94 ----MKIEIVG 100 (184)
Q Consensus 94 ----i~V~~~~ 100 (184)
|+|....
T Consensus 82 ~~~~i~v~~~~ 92 (115)
T 3beg_B 82 ETAYIRVKVDG 92 (115)
T ss_dssp CCCBCEEEECC
T ss_pred eeEEEEeccCC
Confidence 5555544
No 96
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.4e-19 Score=122.77 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=74.0
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCC--CccCCce
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNN--VQLDGKP 93 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g--~~~~g~~ 93 (184)
.+....++++|||+|||+.+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.|++ ..|.|++
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 3455667899999999999999999999999999999998753 67999999999999999998865 4699999
Q ss_pred EEEEEeeCCCC
Q 030010 94 MKIEIVGTNIA 104 (184)
Q Consensus 94 i~V~~~~~~~~ 104 (184)
|+|++++.+..
T Consensus 83 l~V~~a~~~~~ 93 (104)
T 1wex_A 83 AFFNYSTSKRI 93 (104)
T ss_dssp CEEEECSSSSC
T ss_pred EEEEEccCccc
Confidence 99999986543
No 97
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=122.13 Aligned_cols=84 Identities=25% Similarity=0.357 Sum_probs=75.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
.....+.++|||+|||+++++++|+++|+.|. .|.++.++ ++++++||||+|.+.++|++||+.||+..|.++.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 45566789999999999999999999999873 57788887 889999999999999999999999999999999999
Q ss_pred EEEeeCCC
Q 030010 96 IEIVGTNI 103 (184)
Q Consensus 96 V~~~~~~~ 103 (184)
|++++++.
T Consensus 86 V~~a~~~~ 93 (102)
T 2fc8_A 86 LDWAKPKG 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998643
No 98
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.7e-20 Score=131.16 Aligned_cols=86 Identities=17% Similarity=0.304 Sum_probs=76.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEE-eCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIH-YDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~-~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
..+....++|||+|||+.+++++|+++|++||.|..+.++ .+.+++++|||||+|.+.++|++||+ ||+..|.|+.|.
T Consensus 19 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 97 (124)
T 1wel_A 19 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQ 97 (124)
T ss_dssp SSCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 4556678999999999999999999999999999874444 44589999999999999999999999 999999999999
Q ss_pred EEEeeCCC
Q 030010 96 IEIVGTNI 103 (184)
Q Consensus 96 V~~~~~~~ 103 (184)
|.++..+.
T Consensus 98 V~~a~~~~ 105 (124)
T 1wel_A 98 VHPITKKG 105 (124)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99987643
No 99
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.1e-19 Score=120.62 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
.+..|||+||++.+||++|+++|.+||+|..++++. ++|||||+|.+.++|++||+.||+..+.+++|+|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 478999999999999999999999999999999975 58999999999999999999999999999999999985
No 100
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.9e-20 Score=127.83 Aligned_cols=84 Identities=24% Similarity=0.348 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+. ++..|.|+.|+|++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 4456999999999999999999999999999999999997 789999999999999999999987 99999999999999
Q ss_pred eeCCCC
Q 030010 99 VGTNIA 104 (184)
Q Consensus 99 ~~~~~~ 104 (184)
+.++..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 886543
No 101
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=9.4e-20 Score=126.71 Aligned_cols=87 Identities=22% Similarity=0.394 Sum_probs=78.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHH---HHHhhCCCeEEEEEEeCC-CC---CcceEEEEEecCHHHHHHHHHHhCCCcc
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIK---ELFSEVGDLKRYSIHYDR-SG---RSKGTAEVVYSRRADAVAAVKRYNNVQL 89 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~---~~f~~~G~i~~v~i~~~~-~~---~~~g~afV~F~~~e~a~~Ai~~l~g~~~ 89 (184)
.......++|||+|||+.+++++|+ ++|++||.|..|.|+.++ ++ +++|||||+|.+.++|++||+.||+..|
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3445568899999999999999999 999999999999998887 33 5669999999999999999999999999
Q ss_pred CCceEEEEEeeCCC
Q 030010 90 DGKPMKIEIVGTNI 103 (184)
Q Consensus 90 ~g~~i~V~~~~~~~ 103 (184)
.|+.|+|+++.++.
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 99999999998654
No 102
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=127.60 Aligned_cols=85 Identities=24% Similarity=0.379 Sum_probs=75.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHH----HHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIK----ELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~----~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
+....++++|||+|||+.+++++|+ ++|++||.|..|.+. ++++++|||||+|.+.++|++||+.||+..|.|+
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 4556678999999999999999876 699999999888764 4678899999999999999999999999999999
Q ss_pred eEEEEEeeCCC
Q 030010 93 PMKIEIVGTNI 103 (184)
Q Consensus 93 ~i~V~~~~~~~ 103 (184)
+|+|.+++...
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999998654
No 103
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=124.74 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=73.1
Q ss_pred CCCCCCCEEEEcCCCC-CCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCC--CccCCceE
Q 030010 18 SAIETGTKLYISNLDY-GVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNN--VQLDGKPM 94 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g--~~~~g~~i 94 (184)
...+++++|||+|||+ .+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.||+ ..|.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 3455789999999999 9999999999999999999999865 46999999999999999999886 45999999
Q ss_pred EEEEeeCCCC
Q 030010 95 KIEIVGTNIA 104 (184)
Q Consensus 95 ~V~~~~~~~~ 104 (184)
+|++++....
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 1x4d_A 85 RVHLSQKYKR 94 (102)
T ss_dssp EEEEECCCTT
T ss_pred EEEECCCCCC
Confidence 9999986543
No 104
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=8.5e-20 Score=131.59 Aligned_cols=85 Identities=19% Similarity=0.240 Sum_probs=78.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCC---eEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGD---LKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~---i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
.+.....++|||+|||+++|+++|+++|++||. |..|.|+.++.++++|||||+|.+.++|++||+ ||+..|.++.
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 345567899999999999999999999999999 889999999889999999999999999999998 9999999999
Q ss_pred EEEEEeeCC
Q 030010 94 MKIEIVGTN 102 (184)
Q Consensus 94 i~V~~~~~~ 102 (184)
|+|.++...
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999998653
No 105
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.9e-19 Score=121.10 Aligned_cols=81 Identities=15% Similarity=0.251 Sum_probs=73.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC--CceEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLD--GKPMK 95 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~--g~~i~ 95 (184)
....+.++|||+|||+++++++|+++|++||.|..|.|..+ ++||||+|.+.++|++||+.||+..|. ++.|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 34456799999999999999999999999999999988754 679999999999999999999999999 99999
Q ss_pred EEEeeCCC
Q 030010 96 IEIVGTNI 103 (184)
Q Consensus 96 V~~~~~~~ 103 (184)
|++++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998643
No 106
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.80 E-value=1.7e-19 Score=135.51 Aligned_cols=89 Identities=55% Similarity=0.939 Sum_probs=82.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
+....++++|||+|||+.+++++|+++|++||.|..|.|+.++++++++||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 82 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 82 GEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp CSSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred EEeeCCCCC
Q 030010 97 EIVGTNIAT 105 (184)
Q Consensus 97 ~~~~~~~~~ 105 (184)
+++......
T Consensus 162 ~~a~~~~~~ 170 (177)
T 2f3j_A 162 QLVASQIDL 170 (177)
T ss_dssp EEESSGGGG
T ss_pred EEecCCCCC
Confidence 999875543
No 107
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.2e-19 Score=121.66 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=73.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhC--CCccCCceE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN--NVQLDGKPM 94 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~--g~~~~g~~i 94 (184)
.....++++|||+|||+.+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.|+ +..|.|++|
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 445567899999999999999999999999999999988754 6899999999999999999774 678999999
Q ss_pred EEEEeeCCCC
Q 030010 95 KIEIVGTNIA 104 (184)
Q Consensus 95 ~V~~~~~~~~ 104 (184)
+|.+++....
T Consensus 84 ~V~~a~~~~~ 93 (101)
T 2cq1_A 84 YIQYSNHKEL 93 (101)
T ss_dssp EEEECSCSSC
T ss_pred EEEEcCcccC
Confidence 9999986544
No 108
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.1e-19 Score=119.60 Aligned_cols=82 Identities=30% Similarity=0.452 Sum_probs=74.2
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhC--CCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEV--GDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~--G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
.......+.++|||+|||+.+++++|+++|++| |.|..|.+. ++||||+|.+.++|++||+.||+..|.|+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 7 GDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp CCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred ccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 345566778999999999999999999999999 999998875 56999999999999999999999999999
Q ss_pred eEEEEEeeCCC
Q 030010 93 PMKIEIVGTNI 103 (184)
Q Consensus 93 ~i~V~~~~~~~ 103 (184)
.|+|+++++..
T Consensus 80 ~l~v~~a~~~~ 90 (99)
T 2cpd_A 80 PIEVTLAKPVD 90 (99)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCC
Confidence 99999998644
No 109
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=5.6e-20 Score=118.78 Aligned_cols=74 Identities=16% Similarity=0.361 Sum_probs=70.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 030010 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 25 ~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
+|||+|||+++++++|+++|++||.|..|.++.++ +++++|||||+|.+.++|++|++ +|+..|.|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998 89999999999999999999997 9999999999999874
No 110
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=9e-20 Score=126.69 Aligned_cols=82 Identities=12% Similarity=0.271 Sum_probs=75.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
+.....++|||+|||+.+++++|+++|++| .|..|.|+.++.++++|||||+|.+.++|++|| .+|+..|.++.|.|.
T Consensus 11 ~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 11 PINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVS 88 (109)
T ss_dssp CCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 334456899999999999999999999999 899999999988999999999999999999999 689999999999998
Q ss_pred EeeC
Q 030010 98 IVGT 101 (184)
Q Consensus 98 ~~~~ 101 (184)
.+..
T Consensus 89 ~a~~ 92 (109)
T 2dnn_A 89 PATE 92 (109)
T ss_dssp ECCH
T ss_pred ECCc
Confidence 8764
No 111
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=3.2e-19 Score=121.21 Aligned_cols=85 Identities=20% Similarity=0.293 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCCCCEEEEcCCCC-CCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 030010 11 VQQAGRASAIETGTKLYISNLDY-GVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQL 89 (184)
Q Consensus 11 ~~~~~~~~~~~~~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~ 89 (184)
+..........++++|||+|||+ ++++++|+++|++||.|..|.|. ++||||+|.+.++|++||+.||+..|
T Consensus 10 ~~~~~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 10 HSSGLVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMN 82 (97)
T ss_dssp ---------CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred CCcccccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 33344455566789999999998 99999999999999999999884 78999999999999999999999999
Q ss_pred CCceEEEEEeeCC
Q 030010 90 DGKPMKIEIVGTN 102 (184)
Q Consensus 90 ~g~~i~V~~~~~~ 102 (184)
.|+.|+|++++..
T Consensus 83 ~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 83 FGKKLILEVSSSN 95 (97)
T ss_dssp TTEECEEEECCCC
T ss_pred CCEEEEEEecCCC
Confidence 9999999998753
No 112
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=2.6e-20 Score=124.46 Aligned_cols=82 Identities=24% Similarity=0.491 Sum_probs=72.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCC
Q 030010 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTN 102 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~ 102 (184)
++|||+|||.++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.+ |++|++.||+..|.|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999999998 7899999999999999 99999999999999999999999876
Q ss_pred CCCC
Q 030010 103 IATR 106 (184)
Q Consensus 103 ~~~~ 106 (184)
....
T Consensus 81 ~~~~ 84 (90)
T 2ki2_A 81 KSLE 84 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 5543
No 113
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=119.36 Aligned_cols=79 Identities=22% Similarity=0.378 Sum_probs=72.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
....+.++|||+|||+.+++++|+++|++||.|..|.|+ ++||||+|.+.++|++||+.||+..|.|+.|+|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345678999999999999999999999999999999997 3499999999999999999999999999999999
Q ss_pred EeeCCC
Q 030010 98 IVGTNI 103 (184)
Q Consensus 98 ~~~~~~ 103 (184)
++++..
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998653
No 114
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.4e-20 Score=127.97 Aligned_cols=86 Identities=26% Similarity=0.375 Sum_probs=75.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeE----EEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLK----RYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~----~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
.....+.++|||+|||+.+++++|+++|++||.|. .+.+. ++++++||||+|.+.++|++||+.||+..|.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp CCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 34456789999999999999999999999999984 44444 778899999999999999999999999999999
Q ss_pred eEEEEEeeCCCCC
Q 030010 93 PMKIEIVGTNIAT 105 (184)
Q Consensus 93 ~i~V~~~~~~~~~ 105 (184)
.|+|+++.+....
T Consensus 96 ~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 96 ILVIEFGKNKKQR 108 (115)
T ss_dssp BCEEEECCCCSCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999875543
No 115
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6e-20 Score=119.06 Aligned_cols=75 Identities=23% Similarity=0.445 Sum_probs=71.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 030010 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
++|||+|||+++++++|+++|++||.|..|.++.++ +++++|||||+|.+.++|++|++.++ ..|.|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998 78999999999999999999999999 9999999999986
No 116
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=117.69 Aligned_cols=81 Identities=19% Similarity=0.379 Sum_probs=73.9
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHh-CCCccCCce
Q 030010 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRY-NNVQLDGKP 93 (184)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l-~g~~~~g~~ 93 (184)
..++...+.++|||+|||..+++++|+++|++||.|..|.++.+ ++||||+|.+.++|++|++.| ++..|.|+.
T Consensus 4 ~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 4 GSSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 34556677899999999999999999999999999999999853 689999999999999999988 999999999
Q ss_pred EEEEEee
Q 030010 94 MKIEIVG 100 (184)
Q Consensus 94 i~V~~~~ 100 (184)
|+|++++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999874
No 117
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=125.42 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=74.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCC--CccCCceEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNN--VQLDGKPMK 95 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g--~~~~g~~i~ 95 (184)
....++++|||+|||+.+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.|++ ..|.|++|+
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 34556899999999999999999999999999999999865 68999999999999999998874 789999999
Q ss_pred EEEeeCCCCC
Q 030010 96 IEIVGTNIAT 105 (184)
Q Consensus 96 V~~~~~~~~~ 105 (184)
|++++.....
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999865543
No 118
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.3e-19 Score=122.35 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=75.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
...+.++|||+|||..+++++|+++|++||.|..|.|+.+ ++||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 4456899999999999999999999999999999999865 67999999999999999999999999999999999
Q ss_pred eeCCCCC
Q 030010 99 VGTNIAT 105 (184)
Q Consensus 99 ~~~~~~~ 105 (184)
+++....
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9875543
No 119
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=123.38 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=75.5
Q ss_pred CCCCCCEEEEcCCCCCC------CHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 19 AIETGTKLYISNLDYGV------SNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~------te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
.....++|||+|||+.+ ++++|+++|++||.|..|.|+ ..+++++|||||+|.+.++|++||+.||+..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34457899999999999 789999999999999999887 34889999999999999999999999999999998
Q ss_pred -eEEEEEeeCC
Q 030010 93 -PMKIEIVGTN 102 (184)
Q Consensus 93 -~i~V~~~~~~ 102 (184)
.|+|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998754
No 120
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=8e-19 Score=119.34 Aligned_cols=83 Identities=23% Similarity=0.404 Sum_probs=75.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
.....+.++|||+|||+.+++++|+++|++||.|..|.|..+ ++||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 345567899999999999999999999999999999999844 679999999999999999999999999999999
Q ss_pred EEeeCCCC
Q 030010 97 EIVGTNIA 104 (184)
Q Consensus 97 ~~~~~~~~ 104 (184)
+++++...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpj_A 84 RFACHSAS 91 (99)
T ss_dssp EESSCCSC
T ss_pred EEcCCCCC
Confidence 99987543
No 121
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=1.4e-19 Score=126.05 Aligned_cols=80 Identities=23% Similarity=0.307 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCC-CeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVG-DLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G-~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
....++|||+|||+.+++++|+++|++|| .|..+.|... +++|||||+|.+.++|++||+.||+.+|.|+.|+|++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34578999999999999999999999999 8999888532 4689999999999999999999999999999999999
Q ss_pred eeCC
Q 030010 99 VGTN 102 (184)
Q Consensus 99 ~~~~ 102 (184)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8753
No 122
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=3e-19 Score=123.76 Aligned_cols=81 Identities=19% Similarity=0.358 Sum_probs=72.6
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
.+....+.++|||+|||+++++++|+++|++||.|..|.|+ ++||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34556778999999999999999999999999999999987 67999999999999999999999999999999
Q ss_pred EEEeeCCC
Q 030010 96 IEIVGTNI 103 (184)
Q Consensus 96 V~~~~~~~ 103 (184)
|+++++..
T Consensus 97 V~~a~~~~ 104 (108)
T 2jvo_A 97 VVYSKLPA 104 (108)
T ss_dssp EESCSCCC
T ss_pred EEEecCCC
Confidence 99998644
No 123
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=119.46 Aligned_cols=81 Identities=17% Similarity=0.326 Sum_probs=72.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
.....++|||+|||+++++++|+++|++||.|. +.++.+ ++++||||+|.+.++|++||+.||+..|.|+.|+|++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 445578999999999999999999999999996 666643 5688999999999999999999999999999999999
Q ss_pred eeCCC
Q 030010 99 VGTNI 103 (184)
Q Consensus 99 ~~~~~ 103 (184)
++++.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98643
No 124
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.1e-19 Score=120.24 Aligned_cols=80 Identities=23% Similarity=0.347 Sum_probs=71.5
Q ss_pred CCCCCCCEEEEcCCCC-CCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 18 SAIETGTKLYISNLDY-GVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
....+.++|||+|||+ .+++++|+++|++||.|..|.|. ++||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3456789999999999 99999999999999999999985 679999999999999999999999999999999
Q ss_pred EEeeCCCC
Q 030010 97 EIVGTNIA 104 (184)
Q Consensus 97 ~~~~~~~~ 104 (184)
+++++...
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99986544
No 125
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=7.4e-20 Score=126.45 Aligned_cols=86 Identities=13% Similarity=0.227 Sum_probs=78.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCC---eEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGD---LKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~---i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
.......++|||+|||+++++++|+++|+.||. |..|.|+.++.++++|||||+|.+.++|++||+ +|+..|.++.
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 345567899999999999999999999999988 899999998889999999999999999999998 9999999999
Q ss_pred EEEEEeeCCC
Q 030010 94 MKIEIVGTNI 103 (184)
Q Consensus 94 i~V~~~~~~~ 103 (184)
|+|.++.+..
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999987643
No 126
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=120.68 Aligned_cols=76 Identities=25% Similarity=0.363 Sum_probs=71.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCCC
Q 030010 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 103 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~~ 103 (184)
++|||+|||+++++++|+++|++||.|..|.|+.+ +++||||+|.+.++|++|++.||+..|.|+.|+|+++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999876 67899999999999999999999999999999999998754
No 127
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=4.9e-20 Score=125.74 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=74.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
....+.++|||+|||+++++++|+++|++||.|.. .++.++ ++++++||||+|.+.++|++||+ ||+..|.|+.|+|
T Consensus 12 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V 89 (101)
T 1fj7_A 12 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 89 (101)
T ss_dssp TTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEE
Confidence 34456889999999999999999999999999877 455555 78899999999999999999998 9999999999999
Q ss_pred EEeeCCC
Q 030010 97 EIVGTNI 103 (184)
Q Consensus 97 ~~~~~~~ 103 (184)
+++.+..
T Consensus 90 ~~a~~~~ 96 (101)
T 1fj7_A 90 EKPKGRD 96 (101)
T ss_dssp ECCSCCC
T ss_pred EEcCCCC
Confidence 9987643
No 128
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.79 E-value=8.2e-19 Score=134.94 Aligned_cols=85 Identities=27% Similarity=0.335 Sum_probs=76.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
.+..+.++|||+|||++++|++|+++|++||+|..|+|+.++ +++++|||||+|.+.++|++||+.+|+..+.++.|+|
T Consensus 10 ~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~ 89 (213)
T 4f02_A 10 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 89 (213)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccc
Confidence 345567899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EEeeCC
Q 030010 97 EIVGTN 102 (184)
Q Consensus 97 ~~~~~~ 102 (184)
.++...
T Consensus 90 ~~~~~~ 95 (213)
T 4f02_A 90 MWSQRD 95 (213)
T ss_dssp EECCCC
T ss_pred cccccc
Confidence 987653
No 129
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.79 E-value=1.7e-19 Score=122.01 Aligned_cols=84 Identities=24% Similarity=0.457 Sum_probs=74.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHH----HHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIK----ELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~----~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
+...++++|||+|||+.+++++|+ ++|++||.|..|.|. +++++++||||+|.+.++|++|++.||+..|.|+.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE--cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 345678999999999999999999 999999999998876 35567899999999999999999999999999999
Q ss_pred EEEEEeeCCC
Q 030010 94 MKIEIVGTNI 103 (184)
Q Consensus 94 i~V~~~~~~~ 103 (184)
|+|+++++..
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998754
No 130
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.6e-19 Score=119.11 Aligned_cols=79 Identities=28% Similarity=0.384 Sum_probs=70.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCC-eEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCC-CccCCceEEE
Q 030010 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGD-LKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNN-VQLDGKPMKI 96 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~-i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g-~~~~g~~i~V 96 (184)
...+.++|||+|||+++++++|+++|++||. |..+.+. +++||||+|.+.++|++||+.||+ ..|.|+.|+|
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 4456799999999999999999999999999 6655553 478999999999999999999999 9999999999
Q ss_pred EEeeCCC
Q 030010 97 EIVGTNI 103 (184)
Q Consensus 97 ~~~~~~~ 103 (184)
+++++..
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998644
No 131
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=120.60 Aligned_cols=82 Identities=23% Similarity=0.290 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhC--CCccCCceEEE
Q 030010 20 IETGTKLYISNLDYG-VSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN--NVQLDGKPMKI 96 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~-~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~--g~~~~g~~i~V 96 (184)
..++++|||+|||++ +++++|+++|++||.|..|.|+. .++||||+|.+.++|++||+.|+ +..|.|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 567899999999998 99999999999999999999974 36899999999999999999886 46799999999
Q ss_pred EEeeCCCCCC
Q 030010 97 EIVGTNIATR 106 (184)
Q Consensus 97 ~~~~~~~~~~ 106 (184)
++++......
T Consensus 97 ~~a~~~~~~~ 106 (112)
T 1x4f_A 97 DLSEKYKKLV 106 (112)
T ss_dssp EEECSCSSSS
T ss_pred EECccccccc
Confidence 9998755443
No 132
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-19 Score=117.81 Aligned_cols=73 Identities=23% Similarity=0.370 Sum_probs=67.6
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCc-eEE
Q 030010 23 GTKLYISNLDYGV------SNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK-PMK 95 (184)
Q Consensus 23 ~~~l~V~nLp~~~------te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~-~i~ 95 (184)
+++|||+|||..+ ++++|+++|++||.|..|.|. ..+++++|||||+|.+.++|++||+.||+..|.|+ +|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 4789999999999 779999999999999999887 34888999999999999999999999999999999 887
Q ss_pred E
Q 030010 96 I 96 (184)
Q Consensus 96 V 96 (184)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 133
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=2e-18 Score=119.61 Aligned_cols=80 Identities=30% Similarity=0.450 Sum_probs=72.5
Q ss_pred CCCCCCCCEEEEcCCCCC-CCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 17 ASAIETGTKLYISNLDYG-VSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~-~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
..+....++|||+|||+. +++++|+++|++||.|..|.| +++||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 21 ~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 21 NDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp CCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344556799999999999 999999999999999999988 378999999999999999999999999999999
Q ss_pred EEEeeCCC
Q 030010 96 IEIVGTNI 103 (184)
Q Consensus 96 V~~~~~~~ 103 (184)
|++++...
T Consensus 94 V~~a~~~~ 101 (110)
T 1wf1_A 94 INMAGEPK 101 (110)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 99987533
No 134
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-20 Score=132.38 Aligned_cols=83 Identities=23% Similarity=0.492 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEE--------EEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKR--------YSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLD 90 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~--------v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~ 90 (184)
..+.++|||+|||+.+++++|+++|++||.|.. |.|+.++ ++++++||||+|.+.++|++||+.||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999998 8899887 7899999999999999999999999999999
Q ss_pred CceEEEEEeeCC
Q 030010 91 GKPMKIEIVGTN 102 (184)
Q Consensus 91 g~~i~V~~~~~~ 102 (184)
|+.|+|+++.++
T Consensus 84 g~~l~V~~a~~~ 95 (116)
T 2lcw_A 84 GNPIKVSFATRR 95 (116)
Confidence 999999998754
No 135
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=1.3e-18 Score=121.32 Aligned_cols=82 Identities=26% Similarity=0.441 Sum_probs=74.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
+..++++|||+|||+.+++++|+++|++||.|..|.|+.+. .+++||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999998654 4588999999999999999999999999999999999
Q ss_pred eeCC
Q 030010 99 VGTN 102 (184)
Q Consensus 99 ~~~~ 102 (184)
+.+.
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 8753
No 136
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=3e-19 Score=127.04 Aligned_cols=83 Identities=16% Similarity=0.299 Sum_probs=74.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeE--EEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLK--RYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~--~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
.......++|||+|||+.+++++|+++|++| .|. .|.|+.++.++++|||||+|.+.++|++||+. ++..|.++.|
T Consensus 36 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I 113 (126)
T 2hgm_A 36 SADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYI 113 (126)
T ss_dssp TTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEE
Confidence 3445668999999999999999999999999 677 89999988899999999999999999999975 7799999999
Q ss_pred EEEEeeC
Q 030010 95 KIEIVGT 101 (184)
Q Consensus 95 ~V~~~~~ 101 (184)
+|.++..
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9998864
No 137
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.8e-19 Score=120.39 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=72.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
......++|||+|||.++++++|+++|++||.|..|+|. ++++||||+|.+.++|++||+.||+..|.|+.|+|+
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 334457999999999999999999999999999999987 347899999999999999999999999999999999
Q ss_pred EeeC
Q 030010 98 IVGT 101 (184)
Q Consensus 98 ~~~~ 101 (184)
++++
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9875
No 138
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.2e-19 Score=126.43 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCe----EEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDL----KRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i----~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
....++|||+|||+++|+++|+++|++||.| ..|.|+.+++++++|||||+|.+.++|++||+. |+..|.++.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 4567999999999999999999999999975 689999988999999999999999999999986 99999999999
Q ss_pred EEEeeCC
Q 030010 96 IEIVGTN 102 (184)
Q Consensus 96 V~~~~~~ 102 (184)
|..+...
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988653
No 139
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=121.16 Aligned_cols=79 Identities=23% Similarity=0.263 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 030010 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
...++|||+|||+.+++++|+++|++||.|..|.|.. .++||||+|.+.++|++||+.||+..|.++.|.|+++.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3468999999999999999999999999999998863 46799999999999999999999999999999999998
Q ss_pred CCCC
Q 030010 101 TNIA 104 (184)
Q Consensus 101 ~~~~ 104 (184)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 7543
No 140
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=2.1e-18 Score=125.83 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=76.3
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 16 RASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
......+.++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 66 ~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 66 HRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp CSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4555667899999999999999999999999999999999866 478999999999999999999999999999999
Q ss_pred EEEeeCC
Q 030010 96 IEIVGTN 102 (184)
Q Consensus 96 V~~~~~~ 102 (184)
|+++.++
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998764
No 141
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.77 E-value=5.1e-19 Score=120.88 Aligned_cols=85 Identities=21% Similarity=0.373 Sum_probs=77.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
......++|||+|||+++++++|+++|++||.|..|.|+.+++++++|||||+|.+.++|++||+ ++..|.|+.|.|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLG 81 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEE
Confidence 44456799999999999999999999999999999999999988999999999999999999997 9999999999999
Q ss_pred EeeCCCC
Q 030010 98 IVGTNIA 104 (184)
Q Consensus 98 ~~~~~~~ 104 (184)
++.....
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 9886543
No 142
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=6.4e-19 Score=119.02 Aligned_cols=82 Identities=21% Similarity=0.494 Sum_probs=73.3
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
.....+.++|||+|||+.+++++|+++|++||.|..+ ..+++++|||||+|.+.++|++||+.||+..|.|+.|+|
T Consensus 10 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp TSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3445578999999999999999999999999987655 337788999999999999999999999999999999999
Q ss_pred EEeeCC
Q 030010 97 EIVGTN 102 (184)
Q Consensus 97 ~~~~~~ 102 (184)
+++.+.
T Consensus 86 ~~a~~~ 91 (96)
T 1fjc_A 86 YYTGEK 91 (96)
T ss_dssp EECSSS
T ss_pred EEcCCC
Confidence 998754
No 143
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=116.61 Aligned_cols=82 Identities=21% Similarity=0.311 Sum_probs=72.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEE-EEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 030010 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRY-SIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v-~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
.....++|||+|||+++++++|+++|++||.|..| .|+.++. .+.|||+|.+.++|++||+.||+..|.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 33457899999999999999999999999999999 4776652 2339999999999999999999999999999999
Q ss_pred EeeCCC
Q 030010 98 IVGTNI 103 (184)
Q Consensus 98 ~~~~~~ 103 (184)
++.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998763
No 144
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.77 E-value=3e-19 Score=115.24 Aligned_cols=74 Identities=14% Similarity=0.340 Sum_probs=69.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 030010 25 KLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 25 ~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
+|||+|||+++++++|+++|++||.|..|.++.++ ++++++||||+|.+.++|++|++ +++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999887 78999999999999999999997 4889999999999874
No 145
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-18 Score=114.99 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=68.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
....++|||+|||+++++++|+++|++||.|..| +.++ +++ ||||+|.+.++|++||+ ||+..|.|+.|+|++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456899999999999999999999999999987 4454 555 99999999999999999 999999999999998
Q ss_pred eeCCC
Q 030010 99 VGTNI 103 (184)
Q Consensus 99 ~~~~~ 103 (184)
+....
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 76543
No 146
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.76 E-value=7.3e-18 Score=123.51 Aligned_cols=82 Identities=24% Similarity=0.440 Sum_probs=77.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
++++|||+|||+.+++++|+++|++||.|..|.++.++ ++++++||||+|.+.++|++|++.|++..+.++.|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 46899999999999999999999999999999999998 89999999999999999999999999999999999999987
Q ss_pred CCC
Q 030010 101 TNI 103 (184)
Q Consensus 101 ~~~ 103 (184)
+..
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 147
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.76 E-value=9e-18 Score=128.30 Aligned_cols=86 Identities=22% Similarity=0.399 Sum_probs=80.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 030010 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
...++|||+|||..+++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 456899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 030010 100 GTNIATR 106 (184)
Q Consensus 100 ~~~~~~~ 106 (184)
.++..+.
T Consensus 203 ~~~~~~~ 209 (216)
T 2qfj_A 203 VTPPMPL 209 (216)
T ss_dssp SSCSSTT
T ss_pred cCCCCCC
Confidence 8765443
No 148
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1e-17 Score=122.63 Aligned_cols=83 Identities=22% Similarity=0.460 Sum_probs=78.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
....+.++|||+|||..+++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 455678899999999999999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred EEee
Q 030010 97 EIVG 100 (184)
Q Consensus 97 ~~~~ 100 (184)
.+++
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9986
No 149
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=126.24 Aligned_cols=87 Identities=28% Similarity=0.385 Sum_probs=75.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEE------EEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRY------SIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDG 91 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v------~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g 91 (184)
.+..++++|||+|||+.+++++|+++|++||.|..+ .+....+++++|||||+|.+.++|++||+.||+..|.|
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 345678999999999999999999999999998764 22222478889999999999999999999999999999
Q ss_pred ceEEEEEeeCCCC
Q 030010 92 KPMKIEIVGTNIA 104 (184)
Q Consensus 92 ~~i~V~~~~~~~~ 104 (184)
+.|.|.++++...
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999986543
No 150
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=1.5e-17 Score=122.89 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=73.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC--ceEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDG--KPMK 95 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g--~~i~ 95 (184)
++.....+|||+||++.+++++|+++|++||.|++|.|...+ .++||||+|.+.++|++|++.||+..|.+ +.|+
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 344556789999999999999999999999999999987543 47899999999999999999999999976 9999
Q ss_pred EEEeeCCC
Q 030010 96 IEIVGTNI 103 (184)
Q Consensus 96 V~~~~~~~ 103 (184)
|+++++..
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 99998754
No 151
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-17 Score=112.26 Aligned_cols=80 Identities=23% Similarity=0.342 Sum_probs=71.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
....+.++|||+|| .+++++|+++|++||.|..|.|. ++++||||+|.+.++|++||+.||+..|.|+.|+|+
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34456799999996 89999999999999999999985 457899999999999999999999999999999999
Q ss_pred EeeCCCC
Q 030010 98 IVGTNIA 104 (184)
Q Consensus 98 ~~~~~~~ 104 (184)
++.+...
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9986544
No 152
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.75 E-value=2.2e-17 Score=124.51 Aligned_cols=84 Identities=26% Similarity=0.391 Sum_probs=79.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
..+.++|||+|||+.+++++|+++|++||.|..|.+..++ ++.+++||||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4678999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred eeCCC
Q 030010 99 VGTNI 103 (184)
Q Consensus 99 ~~~~~ 103 (184)
+.+..
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98654
No 153
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=8.8e-18 Score=119.76 Aligned_cols=86 Identities=14% Similarity=0.175 Sum_probs=72.7
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceE-EEEEecCHHHHHHHHHHhCCCccCC--
Q 030010 15 GRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGT-AEVVYSRRADAVAAVKRYNNVQLDG-- 91 (184)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~-afV~F~~~e~a~~Ai~~l~g~~~~g-- 91 (184)
+.+....+-..|||+||++.+|+++|+++|++||.|.+|.|... .++| |||+|.+.++|++|++.|||..|.+
T Consensus 20 ~~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~ 95 (130)
T 3zzy_A 20 MAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNAC 95 (130)
T ss_dssp -----CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTE
T ss_pred cccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCC
Confidence 34555566788899999999999999999999999999988753 2577 9999999999999999999999998
Q ss_pred ceEEEEEeeCCCC
Q 030010 92 KPMKIEIVGTNIA 104 (184)
Q Consensus 92 ~~i~V~~~~~~~~ 104 (184)
+.|+|++++....
T Consensus 96 ~~LrI~~ak~~~l 108 (130)
T 3zzy_A 96 CTLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEEECSCSSC
T ss_pred cEEEEEecCCCce
Confidence 8999999987543
No 154
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=7.5e-18 Score=123.84 Aligned_cols=82 Identities=23% Similarity=0.367 Sum_probs=77.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
++++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|++.|++..+.++.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999987 88899999999999999999999999999999999999987
Q ss_pred CCC
Q 030010 101 TNI 103 (184)
Q Consensus 101 ~~~ 103 (184)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 155
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.8e-17 Score=117.45 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceE-EEEEecCHHHHHHHHHHhCCCccCC--ceEEEE
Q 030010 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGT-AEVVYSRRADAVAAVKRYNNVQLDG--KPMKIE 97 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~-afV~F~~~e~a~~Ai~~l~g~~~~g--~~i~V~ 97 (184)
.....|||+||++.+++++|+++|++||.|..|.|.. + .|| |||+|.+.++|+.|++.||+..|.+ +.|+|+
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3345578999999999999999999999999999865 2 275 9999999999999999999999987 689999
Q ss_pred EeeCCC
Q 030010 98 IVGTNI 103 (184)
Q Consensus 98 ~~~~~~ 103 (184)
++++..
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 998754
No 156
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.74 E-value=4.5e-18 Score=113.30 Aligned_cols=77 Identities=21% Similarity=0.354 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 030010 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
...++|||+|||+.+++++|+++|++| .|..|.|. ++++||||+|.+.++|++||+.||+..+.|++|+|+++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 357899999999999999999999999 99999884 568899999999999999999999999999999999987
Q ss_pred CCC
Q 030010 101 TNI 103 (184)
Q Consensus 101 ~~~ 103 (184)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 644
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=9.6e-18 Score=126.31 Aligned_cols=89 Identities=21% Similarity=0.334 Sum_probs=78.1
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 14 AGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
+..+......++|||+|||+++++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++||+. ++..|.|+
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~ 82 (196)
T 1l3k_A 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR 82 (196)
T ss_dssp ----CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE
T ss_pred ccCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCE
Confidence 3455566778999999999999999999999999999999999998 889999999999999999999975 89999999
Q ss_pred eEEEEEeeCCC
Q 030010 93 PMKIEIVGTNI 103 (184)
Q Consensus 93 ~i~V~~~~~~~ 103 (184)
.|.|.++....
T Consensus 83 ~l~v~~~~~~~ 93 (196)
T 1l3k_A 83 VVEPKRAVSRE 93 (196)
T ss_dssp ECEEEECCC--
T ss_pred EeeeecccCcc
Confidence 99999987543
No 158
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=1.7e-17 Score=124.90 Aligned_cols=89 Identities=17% Similarity=0.300 Sum_probs=75.0
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
+....+.++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|.+||+. ++..|.|+.|.
T Consensus 98 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~ 176 (196)
T 1l3k_A 98 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCE 176 (196)
T ss_dssp -----CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECE
T ss_pred cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEE
Confidence 3445567999999999999999999999999999999999998 899999999999999999999976 89999999999
Q ss_pred EEEeeCCCCCC
Q 030010 96 IEIVGTNIATR 106 (184)
Q Consensus 96 V~~~~~~~~~~ 106 (184)
|.++.++....
T Consensus 177 v~~a~~k~~~~ 187 (196)
T 1l3k_A 177 VRKALSKQEMA 187 (196)
T ss_dssp EEECC------
T ss_pred EEecCChhHhc
Confidence 99998765543
No 159
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.6e-18 Score=119.35 Aligned_cols=78 Identities=15% Similarity=0.245 Sum_probs=71.2
Q ss_pred CEEEEcCC----CCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecC----HHH----HHHHHH--HhCCCc
Q 030010 24 TKLYISNL----DYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSR----RAD----AVAAVK--RYNNVQ 88 (184)
Q Consensus 24 ~~l~V~nL----p~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~----~e~----a~~Ai~--~l~g~~ 88 (184)
+.|||+|| |+.+++.+|+++|++||+|..|.++.|+ |+.++|||||+|.+ +++ |.+||. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999 99999999999996 333 888988 789999
Q ss_pred cCCceEEEEEeeC
Q 030010 89 LDGKPMKIEIVGT 101 (184)
Q Consensus 89 ~~g~~i~V~~~~~ 101 (184)
|.|+.|+|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 160
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.7e-18 Score=117.23 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=70.6
Q ss_pred CCCCCCEEEE--cCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc-----CC
Q 030010 19 AIETGTKLYI--SNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQL-----DG 91 (184)
Q Consensus 19 ~~~~~~~l~V--~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~-----~g 91 (184)
...++++||| +||++.+++++|+++|++||.|..|.|.. .++||||+|.+.++|++|++.||+.+| .+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 3456789999 77999999999999999999999988763 267999999999999999999999988 68
Q ss_pred ceEEEEEeeCCC
Q 030010 92 KPMKIEIVGTNI 103 (184)
Q Consensus 92 ~~i~V~~~~~~~ 103 (184)
++|.|.++....
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 899999987543
No 161
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.73 E-value=2.6e-17 Score=121.44 Aligned_cols=79 Identities=28% Similarity=0.402 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 030010 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
...++|||+|||..+++++|+++|++||.|..|.+..++ +++++|||||+|.+.++|++|++.||+..|.|+.|.|+++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 447999999999999999999999999999999999997 8999999999999999999999999999999999999987
No 162
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=110.71 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=67.8
Q ss_pred CCCCCE-EEEcCCCCCCCHHH----HHHHHhhC-CCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 030010 20 IETGTK-LYISNLDYGVSNED----IKELFSEV-GDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 20 ~~~~~~-l~V~nLp~~~te~~----L~~~f~~~-G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
..++.+ |||+|||+.+++++ |+++|++| |+|..| + .|+|||+|.+.++|++|++.|++..|.|++
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------T---GCSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------e---cCEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 344565 99999999999988 55899999 599887 2 289999999999999999999999999999
Q ss_pred EEEEEeeCCCCCC
Q 030010 94 MKIEIVGTNIATR 106 (184)
Q Consensus 94 i~V~~~~~~~~~~ 106 (184)
|+|.+++.....-
T Consensus 76 i~v~~A~~~sd~~ 88 (96)
T 2diu_A 76 IIVSFTPKNRELC 88 (96)
T ss_dssp CEEESSCCSCCCC
T ss_pred EEEEecCCCccee
Confidence 9999998765543
No 163
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.2e-17 Score=120.83 Aligned_cols=80 Identities=25% Similarity=0.361 Sum_probs=75.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCCC
Q 030010 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 103 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~~ 103 (184)
++|||+|||.++++++|+++|++||.|..|.|+.++++++++||||+|.+.++|++|++.|++..+.++.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999999988899999999999999999999999999999999999987544
No 164
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=2.1e-17 Score=126.98 Aligned_cols=81 Identities=21% Similarity=0.352 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
..++|||+|||+.+++++|+++|++||.|..|+|+.++. .++|||||+|.+.++|++||+.||+..|.|++|+|.++.+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 457899999999999999999999999999999998863 3689999999999999999999999999999999999986
Q ss_pred CC
Q 030010 102 NI 103 (184)
Q Consensus 102 ~~ 103 (184)
+.
T Consensus 181 ~~ 182 (213)
T 4f02_A 181 RK 182 (213)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 165
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=1.1e-16 Score=117.60 Aligned_cols=80 Identities=29% Similarity=0.589 Sum_probs=75.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCC--ceEEE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDG--KPMKI 96 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g--~~i~V 96 (184)
..+.++|||+|||..+++++|+++|++||.|..+.+..++ ++++++||||+|.+.++|.+|++.||+..|.| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3567899999999999999999999999999999999998 89999999999999999999999999999988 99999
Q ss_pred EEe
Q 030010 97 EIV 99 (184)
Q Consensus 97 ~~~ 99 (184)
.++
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 166
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=6.6e-17 Score=119.37 Aligned_cols=81 Identities=27% Similarity=0.420 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC---CceEEE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLD---GKPMKI 96 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~---g~~i~V 96 (184)
....++|||+|||+.+++++|+++|++||.|..|.|+.++++++++||||+|.+.++|++|++.||+..+. +++|+|
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999998776 399999
Q ss_pred EEee
Q 030010 97 EIVG 100 (184)
Q Consensus 97 ~~~~ 100 (184)
.++.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 167
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=114.28 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=67.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-C---CCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 030010 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-S---GRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~---~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
.....++|||+|||+.+++++|+++|++||.|. +.++.++ + ++++|||||+|.+.++|++||+.|+ .++|+.|
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 345679999999999999999999999999999 8787776 4 6899999999999999999999883 3667666
Q ss_pred EEEEee
Q 030010 95 KIEIVG 100 (184)
Q Consensus 95 ~V~~~~ 100 (184)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 665443
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.71 E-value=3.1e-17 Score=108.57 Aligned_cols=73 Identities=21% Similarity=0.502 Sum_probs=67.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhC----C-------CeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCc
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEV----G-------DLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQ 88 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~----G-------~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~ 88 (184)
..+.++|||+|||+++++++|+++|++| | .|..+.+..+ ++||||+|.+.++|++|+ .||+..
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 3567999999999999999999999999 8 8999988744 789999999999999999 999999
Q ss_pred cCCceEEEEE
Q 030010 89 LDGKPMKIEI 98 (184)
Q Consensus 89 ~~g~~i~V~~ 98 (184)
|.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999873
No 169
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=2e-17 Score=121.49 Aligned_cols=80 Identities=16% Similarity=0.352 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
+.++|||+|||..+++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++|++ +++..|.|+.|+|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46799999999999999999999999999999999997 89999999999999999999997 89999999999999987
Q ss_pred CC
Q 030010 101 TN 102 (184)
Q Consensus 101 ~~ 102 (184)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 170
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.71 E-value=3.8e-17 Score=125.29 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCC-CCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEe
Q 030010 21 ETGTKLYISNLD-YGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIV 99 (184)
Q Consensus 21 ~~~~~l~V~nLp-~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~ 99 (184)
.++++|||+||| +.+++++|+++|++||.|..|+|+.++ +|||||+|.+.++|++||+.||+..|.|+.|+|.++
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 357899999999 899999999999999999999998653 689999999999999999999999999999999998
Q ss_pred eCCC
Q 030010 100 GTNI 103 (184)
Q Consensus 100 ~~~~ 103 (184)
+...
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 171
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.71 E-value=4.1e-17 Score=109.06 Aligned_cols=79 Identities=14% Similarity=0.238 Sum_probs=62.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCc--cCCceE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQ--LDGKPM 94 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~--~~g~~i 94 (184)
.....+.++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ +++.. +.++.|
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 345667899999999999999999999999999999998864 68999999999999984 45544 568999
Q ss_pred EEEEeeCCC
Q 030010 95 KIEIVGTNI 103 (184)
Q Consensus 95 ~V~~~~~~~ 103 (184)
.|.++.++.
T Consensus 77 ~v~~a~~k~ 85 (89)
T 3d2w_A 77 HISNAEPKH 85 (89)
T ss_dssp EEEECC---
T ss_pred EEEEcCCCC
Confidence 999987643
No 172
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.70 E-value=6e-17 Score=114.33 Aligned_cols=80 Identities=23% Similarity=0.342 Sum_probs=71.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
....+.++|||+|| .+++++|+++|++||.|..|.|. ++++||||+|.+.++|++||+.||+..|.|+.|+|.
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34467899999996 69999999999999999999886 457899999999999999999999999999999999
Q ss_pred EeeCCCC
Q 030010 98 IVGTNIA 104 (184)
Q Consensus 98 ~~~~~~~ 104 (184)
++.+...
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9987543
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=6.3e-17 Score=123.58 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
..+.++|||+|||.++++++|+++|++||.|..|.|+.++ ++++++||||+|.+.++|++||+.||+..|.++.|.|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 3456899999999999999999999999999999999988 889999999999999999999999999999999999987
Q ss_pred eeCC
Q 030010 99 VGTN 102 (184)
Q Consensus 99 ~~~~ 102 (184)
+...
T Consensus 105 ~~~~ 108 (216)
T 2qfj_A 105 PSNI 108 (216)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 6643
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=1.9e-16 Score=115.92 Aligned_cols=80 Identities=24% Similarity=0.454 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCce--EEE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP--MKI 96 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~--i~V 96 (184)
....++|||+|||..+++++|+++|++||.|..+.+..++ ++.+++||||+|.+.++|.+|++.||+..|.|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 3457899999999999999999999999999999999988 8899999999999999999999999999999965 777
Q ss_pred EEe
Q 030010 97 EIV 99 (184)
Q Consensus 97 ~~~ 99 (184)
.+|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 175
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=2.1e-16 Score=108.84 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHHHhhCCCeEEEEEEeCC--CCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 030010 21 ETGTKLYISNLDY-----GVSNEDIKELFSEVGDLKRYSIHYDR--SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 21 ~~~~~l~V~nLp~-----~~te~~L~~~f~~~G~i~~v~i~~~~--~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
.++++|+|.||.. ..++++|+++|++||.|..|.|+.++ +++++||+||+|.+.++|++|++.||+..|.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5688999999953 23689999999999999999999886 3688999999999999999999999999999999
Q ss_pred EEEEEeeC
Q 030010 94 MKIEIVGT 101 (184)
Q Consensus 94 i~V~~~~~ 101 (184)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 176
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-17 Score=110.15 Aligned_cols=78 Identities=14% Similarity=0.245 Sum_probs=65.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 030010 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
.+.++|||+|||+++++++|+++|++||.|..|.|+.+ +++||||+|.+.++|++|+. ....+.++.|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 46799999999999999999999999999999998754 58899999999999986532 1355688999999887
Q ss_pred CCCC
Q 030010 101 TNIA 104 (184)
Q Consensus 101 ~~~~ 104 (184)
++..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6443
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=2e-16 Score=125.93 Aligned_cols=84 Identities=23% Similarity=0.437 Sum_probs=76.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHH----HHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIK----ELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~----~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
+...+.++|||+|||+.+++++|+ ++|++||.|..|.|+. ++++++||||+|.+.++|++||+.||+..|.|+.
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 456779999999999999999976 8999999999998875 6778999999999999999999999999999999
Q ss_pred EEEEEeeCCC
Q 030010 94 MKIEIVGTNI 103 (184)
Q Consensus 94 i~V~~~~~~~ 103 (184)
|+|.+++...
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997654
No 178
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=1.6e-16 Score=120.82 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=72.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeC
Q 030010 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~ 101 (184)
.++|||+|||+.+++++|+++|++||.|..|.|+.+.+++++|||||+|.+.++|++||+.+ +..|.|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 58999999999999999999999999999999999988899999999999999999999765 4699999999998764
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=2.4e-16 Score=116.31 Aligned_cols=81 Identities=22% Similarity=0.422 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CC--CcceEEEEEecCHHHHHHHHHHhCCCccC---CceEE
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SG--RSKGTAEVVYSRRADAVAAVKRYNNVQLD---GKPMK 95 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~--~~~g~afV~F~~~e~a~~Ai~~l~g~~~~---g~~i~ 95 (184)
..++|||+|||+++++++|+++|++||.|..|.|+.++ ++ ++++||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 47899999999999999999999999999999999998 44 89999999999999999999999997776 56777
Q ss_pred EEEeeCC
Q 030010 96 IEIVGTN 102 (184)
Q Consensus 96 V~~~~~~ 102 (184)
+.++...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 7776643
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=6.1e-16 Score=123.13 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=71.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CceEEEE
Q 030010 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLD-GKPMKIE 97 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~-g~~i~V~ 97 (184)
...+.++|||+|||..+++++|+++|++||.|..|+|+.++ ++||||+|.+.++|++||+.||+..|. |+.|+|+
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 34467899999999999999999999999999999998654 579999999999999999999999999 9999999
Q ss_pred Eee
Q 030010 98 IVG 100 (184)
Q Consensus 98 ~~~ 100 (184)
+++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 181
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=2.5e-16 Score=122.27 Aligned_cols=82 Identities=28% Similarity=0.383 Sum_probs=75.2
Q ss_pred CCCCCCCEEEEcCCCC-CCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 18 SAIETGTKLYISNLDY-GVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
.+..++++|||+|||+ .+++++|+++|++||.|..|.|+.++ ++||||+|.+.++|++||+.|++..|.|+.|.|
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4456789999999999 99999999999999999999998775 679999999999999999999999999999999
Q ss_pred EEeeCCC
Q 030010 97 EIVGTNI 103 (184)
Q Consensus 97 ~~~~~~~ 103 (184)
.++....
T Consensus 105 ~~a~~~~ 111 (229)
T 2adc_A 105 TLSKHQN 111 (229)
T ss_dssp ECCSCCC
T ss_pred EEecCcc
Confidence 9987653
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=3e-16 Score=116.27 Aligned_cols=80 Identities=21% Similarity=0.502 Sum_probs=72.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
...+.++|||+|||..+++++|+++|++||.|..+ ..++.+++||||+|.+.++|.+|++.||+..|.|+.|+|++
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 34567899999999999999999999999987755 45788899999999999999999999999999999999999
Q ss_pred eeCC
Q 030010 99 VGTN 102 (184)
Q Consensus 99 ~~~~ 102 (184)
+.++
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9764
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=5.2e-16 Score=123.64 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=80.5
Q ss_pred CCCCCCCEEEEcCCCCCC-CHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 18 SAIETGTKLYISNLDYGV-SNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~-te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
......++|||+|||+.+ ++++|+++|++||.|..|.|+.+.+++++++|||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 179 ~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 179 PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 344568999999999995 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCC
Q 030010 97 EIVGTNIA 104 (184)
Q Consensus 97 ~~~~~~~~ 104 (184)
.++.+...
T Consensus 259 ~~a~~~~~ 266 (284)
T 3smz_A 259 SFCAPGPP 266 (284)
T ss_dssp EECCSSSC
T ss_pred EEecCCCc
Confidence 99987554
No 184
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=1.8e-16 Score=116.36 Aligned_cols=78 Identities=23% Similarity=0.444 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
++++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|++|++ +...+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 47899999999999999999999999999999999997 89999999999999999999998 4678999999998876
Q ss_pred C
Q 030010 101 T 101 (184)
Q Consensus 101 ~ 101 (184)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 185
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.65 E-value=3.1e-16 Score=122.66 Aligned_cols=82 Identities=23% Similarity=0.323 Sum_probs=71.4
Q ss_pred CCCCCCCEEEEcCCCCCC---------CHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCc
Q 030010 18 SAIETGTKLYISNLDYGV---------SNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQ 88 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~---------te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~ 88 (184)
+.....++|||+||+..+ +|++|+++|++||.|..|.|+. .++||||+|.+.++|+.|++.|++..
T Consensus 129 s~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 129 SFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp --CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 446678999999999998 7999999999999999999985 47899999999999999999999999
Q ss_pred c------------CCceEEEEEeeCCCC
Q 030010 89 L------------DGKPMKIEIVGTNIA 104 (184)
Q Consensus 89 ~------------~g~~i~V~~~~~~~~ 104 (184)
| .|+.|.|.+++....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 9 899999999987544
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.65 E-value=5.2e-16 Score=124.09 Aligned_cols=84 Identities=19% Similarity=0.329 Sum_probs=76.9
Q ss_pred CCCCCCCEEEEcCCCCC-CCHHHHHHHHhhCCCeEEEEEEeCCC--CCcceEEEEEecCHHHHHHHHHHhCCCccCCceE
Q 030010 18 SAIETGTKLYISNLDYG-VSNEDIKELFSEVGDLKRYSIHYDRS--GRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPM 94 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~-~te~~L~~~f~~~G~i~~v~i~~~~~--~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i 94 (184)
....+.++|||+|||+. +++++|+++|++||.|..|.|+.+.. +.+++||||+|.+.++|.+|| .||+..|.|+.|
T Consensus 205 ~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i 283 (292)
T 2ghp_A 205 SATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREI 283 (292)
T ss_dssp --CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEE
T ss_pred ccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEE
Confidence 35567899999999999 99999999999999999999998875 899999999999999999999 999999999999
Q ss_pred EEEEeeCC
Q 030010 95 KIEIVGTN 102 (184)
Q Consensus 95 ~V~~~~~~ 102 (184)
.|.++.++
T Consensus 284 ~V~~a~~k 291 (292)
T 2ghp_A 284 SVSLADKK 291 (292)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999864
No 187
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.3e-15 Score=103.75 Aligned_cols=85 Identities=16% Similarity=0.315 Sum_probs=71.9
Q ss_pred CCCCCCCCEEEEcCCCCCCC-----------HHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 030010 17 ASAIETGTKLYISNLDYGVS-----------NEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~t-----------e~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~ 85 (184)
.....++++|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|++||+.||
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcC
Confidence 34556789999999944332 5799999999999999965 444 378999999999999999999999
Q ss_pred CCccCCceEEEEEeeCCCC
Q 030010 86 NVQLDGKPMKIEIVGTNIA 104 (184)
Q Consensus 86 g~~~~g~~i~V~~~~~~~~ 104 (184)
+..|.|++|+|.++.+...
T Consensus 86 g~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TCEETTEECEEEECCSCCC
T ss_pred CCEECCcEEEEEEeCCCCC
Confidence 9999999999999976543
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=2.5e-15 Score=119.65 Aligned_cols=82 Identities=22% Similarity=0.341 Sum_probs=77.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
..++|||+|||+.+++++|+++|++||.|..|.|+.++ +++++|||||+|.+.++|.+|++.|++..|.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46899999999999999999999999999999999988 89999999999999999999999999999999999999987
Q ss_pred CCC
Q 030010 101 TNI 103 (184)
Q Consensus 101 ~~~ 103 (184)
+..
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 654
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=9.9e-16 Score=117.37 Aligned_cols=78 Identities=15% Similarity=0.281 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhCCCe--EEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCc----eE
Q 030010 21 ETGTKLYISNLDYGVSNEDIKELFSEVGDL--KRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK----PM 94 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~G~i--~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~----~i 94 (184)
.++++|||+|||+.+++++|+++|++||.| ..|+++.++ +..+++|||+|.+.++|.+||..||+.+|.++ ++
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 467899999999999999999999999999 889888776 44569999999999999999999999999886 56
Q ss_pred EEEEe
Q 030010 95 KIEIV 99 (184)
Q Consensus 95 ~V~~~ 99 (184)
.|.++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66664
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=2.6e-15 Score=113.45 Aligned_cols=79 Identities=24% Similarity=0.347 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCC-CeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CceEEEE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVG-DLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLD-GKPMKIE 97 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G-~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~-g~~i~V~ 97 (184)
..++++|||+|||..+++++|+++|++|| .|..|.|+.+. +++|||+|.+.++|.+|++.||+..|. |+.|+|.
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 35689999999999999999999999999 99999986532 679999999999999999999999999 9999999
Q ss_pred EeeCC
Q 030010 98 IVGTN 102 (184)
Q Consensus 98 ~~~~~ 102 (184)
+++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99864
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=1e-15 Score=115.74 Aligned_cols=78 Identities=28% Similarity=0.420 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 030010 22 TGTKLYISNLDY-GVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 22 ~~~~l~V~nLp~-~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
.+++|||+|||+ .+++++|+++|++||.|..|.|+.++ ++||||+|.+.++|++|++.||+..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 368999999999 99999999999999999999998765 6799999999999999999999999999999999988
Q ss_pred CCC
Q 030010 101 TNI 103 (184)
Q Consensus 101 ~~~ 103 (184)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=2.8e-16 Score=116.44 Aligned_cols=85 Identities=21% Similarity=0.217 Sum_probs=72.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEE
Q 030010 18 SAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIE 97 (184)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~ 97 (184)
....+.++|||+|||+++++++|+++|.+||.|..+.+....++++++||||+|.+.++|++|| .||+..|.|+.|.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 4556789999999999999999999999998775533332337788999999999999999999 599999999999999
Q ss_pred EeeCCC
Q 030010 98 IVGTNI 103 (184)
Q Consensus 98 ~~~~~~ 103 (184)
++.+..
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 987643
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.59 E-value=5.2e-15 Score=114.78 Aligned_cols=79 Identities=24% Similarity=0.351 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCC-CeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC-CceEEEE
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVG-DLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLD-GKPMKIE 97 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G-~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~-g~~i~V~ 97 (184)
..++++|||+|||..+++++|+++|++|| .|..|.|+.+ .++||||+|.+.++|.+||+.||+..|. |+.|+|.
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 35579999999999999999999999999 9999998643 3679999999999999999999999999 9999999
Q ss_pred EeeCC
Q 030010 98 IVGTN 102 (184)
Q Consensus 98 ~~~~~ 102 (184)
+++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99864
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.59 E-value=4.5e-15 Score=117.33 Aligned_cols=83 Identities=27% Similarity=0.369 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCC-CccC---CceEEEE
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNN-VQLD---GKPMKIE 97 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g-~~~~---g~~i~V~ 97 (184)
++++|||+|||..+++++|+++|++||.|..|.|+.+.+++++|||||+|.+.++|.+||..||+ ..+. +++|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999955 4444 8999999
Q ss_pred EeeCCCC
Q 030010 98 IVGTNIA 104 (184)
Q Consensus 98 ~~~~~~~ 104 (184)
++.....
T Consensus 175 ~~~~~~~ 181 (261)
T 3sde_A 175 PMEQFDD 181 (261)
T ss_dssp ECCCEES
T ss_pred eccccCc
Confidence 9886543
No 195
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=6.4e-16 Score=106.25 Aligned_cols=72 Identities=24% Similarity=0.403 Sum_probs=63.5
Q ss_pred EcCCCCCCCHHHHHHHH------------hhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 28 ISNLDYGVSNEDIKELF------------SEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 28 V~nLp~~~te~~L~~~f------------~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
+.+|++.+++++|+++| ++||.|..|.|+.+++++++|||||+|.+.++|++|++.||+..|.|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666667777776666 999999999999888888999999999999999999999999999999999
Q ss_pred EEEe
Q 030010 96 IEIV 99 (184)
Q Consensus 96 V~~~ 99 (184)
|+++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.59 E-value=4.9e-15 Score=101.98 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=71.0
Q ss_pred CCCCEEEEcCC--CCCCC--------HHHHHHHHhhCCCeEEEEEEeCCC---CCcceEEEEEecCHHHHHHHHHHhCCC
Q 030010 21 ETGTKLYISNL--DYGVS--------NEDIKELFSEVGDLKRYSIHYDRS---GRSKGTAEVVYSRRADAVAAVKRYNNV 87 (184)
Q Consensus 21 ~~~~~l~V~nL--p~~~t--------e~~L~~~f~~~G~i~~v~i~~~~~---~~~~g~afV~F~~~e~a~~Ai~~l~g~ 87 (184)
.+++.|.|.|+ |..+. +++|+++|++||.|..|.|+.++. .+++|++||+|.+.++|++|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46889999998 43443 368999999999999999988873 367999999999999999999999999
Q ss_pred ccCCceEEEEEeeC
Q 030010 88 QLDGKPMKIEIVGT 101 (184)
Q Consensus 88 ~~~g~~i~V~~~~~ 101 (184)
.|.|+.|+|+++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999864
No 197
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.58 E-value=7.1e-15 Score=103.22 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=70.4
Q ss_pred CCCEEEEcCCC--CCC---CHHHHHHHHhhCCCeEEEEEEeCC-C----CCcceEEEEEecCHHHHHHHHHHhCCCccCC
Q 030010 22 TGTKLYISNLD--YGV---SNEDIKELFSEVGDLKRYSIHYDR-S----GRSKGTAEVVYSRRADAVAAVKRYNNVQLDG 91 (184)
Q Consensus 22 ~~~~l~V~nLp--~~~---te~~L~~~f~~~G~i~~v~i~~~~-~----~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g 91 (184)
++++|+|.|+- .++ .+++|+++|++||.|..|.|+.++ + ++++|++||+|.+.++|++|++.||+..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 68999999983 222 368999999999999999999876 2 4578999999999999999999999999999
Q ss_pred ceEEEEEeeC
Q 030010 92 KPMKIEIVGT 101 (184)
Q Consensus 92 ~~i~V~~~~~ 101 (184)
+.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.58 E-value=3.9e-15 Score=118.97 Aligned_cols=82 Identities=16% Similarity=0.259 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCC-CeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEee
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVG-DLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVG 100 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G-~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~ 100 (184)
..++|||+|||+.+++++|+++|++|| .|..|.|+.++.+.+++||||+|.+.++|.+|++.|++..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999988888889999999999999999999999999999999999987
Q ss_pred CCC
Q 030010 101 TNI 103 (184)
Q Consensus 101 ~~~ 103 (184)
+..
T Consensus 196 ~~~ 198 (292)
T 2ghp_A 196 PLE 198 (292)
T ss_dssp CC-
T ss_pred CCc
Confidence 544
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=6.4e-15 Score=116.47 Aligned_cols=81 Identities=22% Similarity=0.380 Sum_probs=73.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEE
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKI 96 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V 96 (184)
.......++|||+|||+++|+++|+++|++||.|..|.|..+ ++||||+|.+.++|++||..||+..|.++.|.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 344566789999999999999999999999999999998643 689999999999999999999999999999999
Q ss_pred EEeeCC
Q 030010 97 EIVGTN 102 (184)
Q Consensus 97 ~~~~~~ 102 (184)
.++.+.
T Consensus 91 ~~a~~~ 96 (261)
T 3sde_A 91 RFATHG 96 (261)
T ss_dssp EECCCS
T ss_pred eecccC
Confidence 998753
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.56 E-value=1.6e-14 Score=106.37 Aligned_cols=75 Identities=19% Similarity=0.443 Sum_probs=67.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhC----C-------CeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 030010 21 ETGTKLYISNLDYGVSNEDIKELFSEV----G-------DLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQL 89 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~----G-------~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~ 89 (184)
.+.++|||+|||+.+++++|+++|++| | .|..+.+.. .++||||+|.+.++|++|+ .||+..|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 357899999999999999999999999 6 777777753 4789999999999999999 8999999
Q ss_pred CCceEEEEEeeC
Q 030010 90 DGKPMKIEIVGT 101 (184)
Q Consensus 90 ~g~~i~V~~~~~ 101 (184)
.|+.|.|.++..
T Consensus 76 ~g~~i~v~~~~~ 87 (172)
T 2g4b_A 76 QGQSLKIRRPHD 87 (172)
T ss_dssp TTEECEEECCSS
T ss_pred cCceeeecCCcc
Confidence 999999998654
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.54 E-value=2.3e-14 Score=107.87 Aligned_cols=76 Identities=18% Similarity=0.431 Sum_probs=66.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhC----C-------CeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEV----G-------DLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLD 90 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~----G-------~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~ 90 (184)
.+++|||+|||+.+++++|+++|++| | .|..+.+. ++++||||+|.+.++|++|| .||+..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 47899999999999999999999999 5 66666664 44789999999999999999 89999999
Q ss_pred CceEEEEEeeCCC
Q 030010 91 GKPMKIEIVGTNI 103 (184)
Q Consensus 91 g~~i~V~~~~~~~ 103 (184)
|+.|.|.++....
T Consensus 77 g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 77 GQSLKIRRPHDYQ 89 (198)
T ss_dssp TEEEEEECCCCCC
T ss_pred CceEEEeCCCCCC
Confidence 9999999887643
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-13 Score=92.85 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=64.3
Q ss_pred CCCCEEEEcCCC-------CCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 030010 21 ETGTKLYISNLD-------YGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 21 ~~~~~l~V~nLp-------~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
....+|.|.-.. ..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|+.||+.++ .+.+++
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~ 81 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNP 81 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSB
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCe
Confidence 335677776543 458999999999999999999987 3678999999999999999998744 467999
Q ss_pred EEEEEeeCCCC
Q 030010 94 MKIEIVGTNIA 104 (184)
Q Consensus 94 i~V~~~~~~~~ 104 (184)
|+|.++++...
T Consensus 82 l~V~~a~~~~~ 92 (100)
T 2d9o_A 82 LKISWLEGQPQ 92 (100)
T ss_dssp CEEECSSCCCC
T ss_pred EEEEEccCCCC
Confidence 99999876543
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.49 E-value=5.9e-14 Score=115.08 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=66.3
Q ss_pred CCCCCCCEEEEcC--CCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC---Cc
Q 030010 18 SAIETGTKLYISN--LDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLD---GK 92 (184)
Q Consensus 18 ~~~~~~~~l~V~n--Lp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~---g~ 92 (184)
....++.+|||+| |++.+||++|+++|++||+|..|.+.. .++||||+|.+.++|++||+.||+.++. |+
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 3467789999999 578999999999999999999887653 4689999999999999999999998873 34
Q ss_pred --eEEEEEee
Q 030010 93 --PMKIEIVG 100 (184)
Q Consensus 93 --~i~V~~~~ 100 (184)
.|.|.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57777764
No 204
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=7.9e-13 Score=92.78 Aligned_cols=81 Identities=22% Similarity=0.285 Sum_probs=72.6
Q ss_pred CCCCCCCCEEEEcCCCCC-CCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecC-HHHHHHHHHHhC--CCccCCc
Q 030010 17 ASAIETGTKLYISNLDYG-VSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSR-RADAVAAVKRYN--NVQLDGK 92 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~-~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~-~e~a~~Ai~~l~--g~~~~g~ 92 (184)
.....+++.|||+||+.. +++++|+++|++||+|..|.+..+.. .|||+|.+ .++|..|++.|+ +..|.+.
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 456788999999999999 99999999999999999999987754 69999999 899999999995 6899999
Q ss_pred eEEEEEeeCC
Q 030010 93 PMKIEIVGTN 102 (184)
Q Consensus 93 ~i~V~~~~~~ 102 (184)
.+++++....
T Consensus 87 ~~~~evL~Ge 96 (121)
T 1owx_A 87 EVTWEVLEGE 96 (121)
T ss_dssp SEEEEECCHH
T ss_pred EEEEEECCCH
Confidence 9999887643
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.44 E-value=6e-13 Score=92.79 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=66.2
Q ss_pred CCCCEEEEcCC--CCCC--------CHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 030010 21 ETGTKLYISNL--DYGV--------SNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLD 90 (184)
Q Consensus 21 ~~~~~l~V~nL--p~~~--------te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~ 90 (184)
.++++|.|.|+ +... .+++|+++|++||.|..|.|..+. .+|++||+|.+.++|++|++.|||..|.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 46889999998 2221 135789999999999999886543 4899999999999999999999999999
Q ss_pred CceEEEEEeeC
Q 030010 91 GKPMKIEIVGT 101 (184)
Q Consensus 91 g~~i~V~~~~~ 101 (184)
|+.|+|+++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999865
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.4e-11 Score=81.72 Aligned_cols=75 Identities=13% Similarity=0.235 Sum_probs=62.5
Q ss_pred CCCCEEEEcCCCC----CCCH----HHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 21 ETGTKLYISNLDY----GVSN----EDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 21 ~~~~~l~V~nLp~----~~te----~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
++.-+|+|.-++. +... .+|.+.|++||.|..++|+.++ +||+|.+.++|.+||+ ||+..+.|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 3456777776652 2222 5789999999999999998763 8999999999999998 999999999
Q ss_pred eEEEEEeeCCC
Q 030010 93 PMKIEIVGTNI 103 (184)
Q Consensus 93 ~i~V~~~~~~~ 103 (184)
.|+|+++++..
T Consensus 77 ~LkV~lkt~dW 87 (91)
T 2dnr_A 77 TITIALKSPSG 87 (91)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEeCCCCc
Confidence 99999998754
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.5e-10 Score=77.11 Aligned_cols=74 Identities=9% Similarity=0.189 Sum_probs=61.9
Q ss_pred CCCCCEEEEcCCCCC------CCH---HHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccC
Q 030010 20 IETGTKLYISNLDYG------VSN---EDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLD 90 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~------~te---~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~ 90 (184)
.++.-+|+|.-++.. ..+ .+|.+.|++||.|..++|+.++ +||+|.+.++|.+||+ ||+..+.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 445678888877632 221 4689999999999999999763 9999999999999998 9999999
Q ss_pred CceEEEEEeeC
Q 030010 91 GKPMKIEIVGT 101 (184)
Q Consensus 91 g~~i~V~~~~~ 101 (184)
|+.|+|.+..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998653
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.06 E-value=4.8e-10 Score=86.22 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=65.3
Q ss_pred CCEEEEcCCC-----CCCCHHHHHHHHhhCCCeEEEEEEeCC-----CCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 23 GTKLYISNLD-----YGVSNEDIKELFSEVGDLKRYSIHYDR-----SGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 23 ~~~l~V~nLp-----~~~te~~L~~~f~~~G~i~~v~i~~~~-----~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
...+.+.|+- ..-.+++|++.|++||.|..|.|+.+. +++++|++||+|.+.++|++||+.|||..+.|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 4455555541 123467899999999999999998554 348899999999999999999999999999999
Q ss_pred eEEEEEeeC
Q 030010 93 PMKIEIVGT 101 (184)
Q Consensus 93 ~i~V~~~~~ 101 (184)
.|.|.+...
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999764
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.63 E-value=2.1e-07 Score=63.31 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=65.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhC-----CCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 21 ETGTKLYISNLDYGVSNEDIKELFSEV-----GDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~te~~L~~~f~~~-----G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
+..++|-|-|||.+++...|+.++.++ |.|.+|.+..|. +-|+|+|.+...|-+|.-.|+|.+|.|++|+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 346788888999999999999999999 999999888774 3699999999999999989999999999999
Q ss_pred EEE
Q 030010 96 IEI 98 (184)
Q Consensus 96 V~~ 98 (184)
+.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=0.00012 Score=49.14 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=62.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhC-----CCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCce
Q 030010 19 AIETGTKLYISNLDYGVSNEDIKELFSEV-----GDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKP 93 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~-----G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~ 93 (184)
.....++|.|.|||..+.++.|+-+|+.- |.|..|+... .-|+|+|.+.+.|++.++. ..+.|++..
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~ 75 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQ 75 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSB
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeE
Confidence 44568999999999999999999999862 6888887753 4799999999999999863 478999999
Q ss_pred EEEEEeeC
Q 030010 94 MKIEIVGT 101 (184)
Q Consensus 94 i~V~~~~~ 101 (184)
|.|....+
T Consensus 76 LsV~P~~~ 83 (104)
T 2dhx_A 76 LSLRPAPP 83 (104)
T ss_dssp CEEEECCC
T ss_pred EEEEcCCC
Confidence 99976544
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.04 E-value=3.7e-05 Score=51.16 Aligned_cols=58 Identities=22% Similarity=0.228 Sum_probs=49.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHh
Q 030010 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRY 84 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l 84 (184)
.....+.++| .+|.++...||.++|+.||.| .|+++.|. .|||.|.+++.|..|+..+
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC------eEEEEecCHHHHHHHHHhc
Confidence 3444678888 999999999999999999965 47777664 7999999999999999865
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.98 E-value=1.9e-05 Score=53.34 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=62.6
Q ss_pred CCCCEEEEcCCCCCC-C----HHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEE
Q 030010 21 ETGTKLYISNLDYGV-S----NEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMK 95 (184)
Q Consensus 21 ~~~~~l~V~nLp~~~-t----e~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~ 95 (184)
.-.++|+|.||+..+ . .+.++++|.+|+++....+... -.-.-|.|.+.++|.+|-..||+..+.|+.|+
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 346789999998865 2 2568999999998877655522 22578999999999999999999999999999
Q ss_pred EEEeeCC
Q 030010 96 IEIVGTN 102 (184)
Q Consensus 96 V~~~~~~ 102 (184)
|-++.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998853
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.97 E-value=5.4e-05 Score=50.06 Aligned_cols=69 Identities=13% Similarity=0.215 Sum_probs=57.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CC--CcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SG--RSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~--~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
++|.|++||+.+||+++.+.++.+..+....++..+ +. ....-|||.|.+.+++..-.+.++++.|.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 578999999999999999999988887777776655 22 2456899999999999999999999887653
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.59 E-value=0.00014 Score=48.47 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=47.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 030010 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~ 85 (184)
.+.++| .+|.++...||.++|+.||. ..|.++.|. .|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 466777 99999999999999999994 458888764 79999999999999998764
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.33 E-value=0.00081 Score=46.45 Aligned_cols=74 Identities=9% Similarity=0.081 Sum_probs=56.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCC-ceEEEE
Q 030010 19 AIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDG-KPMKIE 97 (184)
Q Consensus 19 ~~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g-~~i~V~ 97 (184)
.....+.|.|-+.|... -..|-..|++||.|.+.... ....+.+|.|.+..+|++||. .|+..|.+ -.|-|.
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-----~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-----NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-----SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-----CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 34457788888998874 56778899999999887652 123489999999999999996 49998885 445555
Q ss_pred Ee
Q 030010 98 IV 99 (184)
Q Consensus 98 ~~ 99 (184)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.24 E-value=0.00044 Score=46.04 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=55.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCC-CCC--cceEEEEEecCHHHHHHHHHHhCCCccCCc-----e
Q 030010 22 TGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDR-SGR--SKGTAEVVYSRRADAVAAVKRYNNVQLDGK-----P 93 (184)
Q Consensus 22 ~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~--~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~-----~ 93 (184)
-+-+|.|+.||+.+||+++.+.++..=.+....++..+ +.+ ...-|||.|.+.+++..-.+.+++..|.+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 35689999999999999988877765444332222222 211 234689999999999999999999777653 3
Q ss_pred EEEEEe
Q 030010 94 MKIEIV 99 (184)
Q Consensus 94 i~V~~~ 99 (184)
..|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 445554
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.62 E-value=0.0012 Score=56.01 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=40.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHH
Q 030010 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVK 82 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~ 82 (184)
++|+|. .|..+++.+|.++|++||+|..+.+..++ .-|+.|||.+.+++.+++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 789997 79999999999999999999998776543 3599999999999887764
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.32 E-value=0.0041 Score=44.38 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=28.7
Q ss_pred EEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCcc
Q 030010 53 YSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQL 89 (184)
Q Consensus 53 v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~ 89 (184)
++|+.+.. +++||+||+|.+.++|++|++.+++...
T Consensus 3 ~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~ 38 (158)
T 2kn4_A 3 YKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNG 38 (158)
T ss_dssp EEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCC
Confidence 55665553 5899999999999999999998876433
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.18 E-value=0.009 Score=41.81 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=53.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEE-EEEEe---------CCCC-----CcceEEEEEecCHHHHHHHHHHhCCC
Q 030010 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKR-YSIHY---------DRSG-----RSKGTAEVVYSRRADAVAAVKRYNNV 87 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~-v~i~~---------~~~~-----~~~g~afV~F~~~e~a~~Ai~~l~g~ 87 (184)
.+.|.|-+.|+..+ ..+-+.|++||.|.+ +.... .+.. ....+..|+|.+..+|++||. .|+.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45566778877644 556678999999865 21110 0000 124588999999999999996 5999
Q ss_pred ccCCceEEEEEeeC
Q 030010 88 QLDGKPMKIEIVGT 101 (184)
Q Consensus 88 ~~~g~~i~V~~~~~ 101 (184)
.|.|.-|-|....+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99998777776643
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.32 E-value=0.0048 Score=43.76 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=35.9
Q ss_pred CCcceEEEEEecCHHHHHHHHHHh-CCCccCCceEEEEEeeC
Q 030010 61 GRSKGTAEVVYSRRADAVAAVKRY-NNVQLDGKPMKIEIVGT 101 (184)
Q Consensus 61 ~~~~g~afV~F~~~e~a~~Ai~~l-~g~~~~g~~i~V~~~~~ 101 (184)
.+.+|+++|+|.+.++|++|++.| |+..++| .|.+.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 357899999999999999999999 9999999 899887654
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.56 E-value=0.29 Score=41.87 Aligned_cols=56 Identities=23% Similarity=0.249 Sum_probs=45.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 030010 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNN 86 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g 86 (184)
.+.++|+ +|..+...+|.++|+.||.| .|.++.+. .|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS------EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC------eEEEEECCHHHHHHHHHHHHh
Confidence 4666776 88888999999999999964 46665432 799999999999999998753
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=84.28 E-value=3.1 Score=25.46 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=41.6
Q ss_pred EEEEcCC-CCCCCHHHHHHHHhhCC-----CeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEE
Q 030010 25 KLYISNL-DYGVSNEDIKELFSEVG-----DLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEI 98 (184)
Q Consensus 25 ~l~V~nL-p~~~te~~L~~~f~~~G-----~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~ 98 (184)
++||..= -..+...+|..++..-+ .|-.|.|.. .|.||+-.. +.+..+++.|+...+.|+.+.|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD-------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS-------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC-------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEE
Confidence 4555311 23356677777776443 455666653 278888874 567888999999999999999987
Q ss_pred ee
Q 030010 99 VG 100 (184)
Q Consensus 99 ~~ 100 (184)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=76.36 E-value=13 Score=24.05 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=46.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 030010 20 IETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNN 86 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g 86 (184)
....|-|.|-|+|..+-..++.-...-.|.--.|..+ .|-|.+.|.+.++-..||.+|-+
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHHEE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHHHh
Confidence 3457889999999999888777666667766666665 45699999999999999988744
No 224
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=72.34 E-value=1.1 Score=29.83 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=0.0
Q ss_pred CCCCCEEEEcCCCCCCCHHH
Q 030010 20 IETGTKLYISNLDYGVSNED 39 (184)
Q Consensus 20 ~~~~~~l~V~nLp~~~te~~ 39 (184)
....++|||+|||+.+|++.
T Consensus 94 ~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------------
T ss_pred cCCCCceEeCCCCCCccccc
Confidence 34456899999999998764
No 225
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=59.56 E-value=1.9 Score=35.01 Aligned_cols=9 Identities=44% Similarity=0.460 Sum_probs=3.7
Q ss_pred CCHHHHHHH
Q 030010 35 VSNEDIKEL 43 (184)
Q Consensus 35 ~te~~L~~~ 43 (184)
+++++|+++
T Consensus 229 vt~~~l~~i 237 (358)
T 2pk2_A 229 VTLELLDEL 237 (358)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 344444433
No 226
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=51.98 E-value=12 Score=32.87 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHH----hhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 030010 31 LDYGVSNEDIKELF----SEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85 (184)
Q Consensus 31 Lp~~~te~~L~~~f----~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~ 85 (184)
.+.+.+--||..+| ..+|.|+++.|...+-.....++++.|.+.++|.+++..+-
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 34444445788888 36788998887665555556788999999999999887654
No 227
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=50.96 E-value=8.2 Score=20.73 Aligned_cols=14 Identities=50% Similarity=0.700 Sum_probs=11.4
Q ss_pred CCCCCChhhHhHHH
Q 030010 157 RNEKISAEDLDADL 170 (184)
Q Consensus 157 r~~~~~~~~lD~el 170 (184)
|+++.+.||||+=|
T Consensus 19 RNrpltDEeLD~mL 32 (39)
T 3lqv_P 19 RNRPLSDEELDAMF 32 (39)
T ss_dssp TTCCCCHHHHHHTC
T ss_pred hcCCCCHHHHHHhC
Confidence 77889999999744
No 228
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=49.62 E-value=52 Score=23.76 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=34.8
Q ss_pred CCEEEEcCCCCC---------CCHHHHHHHH--hhCCCeEEEEEEeCCCCCcceEEEEEecCH
Q 030010 23 GTKLYISNLDYG---------VSNEDIKELF--SEVGDLKRYSIHYDRSGRSKGTAEVVYSRR 74 (184)
Q Consensus 23 ~~~l~V~nLp~~---------~te~~L~~~f--~~~G~i~~v~i~~~~~~~~~g~afV~F~~~ 74 (184)
...+.|-|+|.. .+...|++.| ..|.+++ |....++.+ +.+++.|+|.+-
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~d 72 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKD 72 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSS
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCC
Confidence 456777888862 3346889877 8998766 555555544 478999999663
No 229
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=42.04 E-value=49 Score=19.08 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=41.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHH
Q 030010 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKR 83 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~ 83 (184)
..++.|.++.-.-....|+..+.. --|..+.+... .+.+.|+|.+.+....+|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHHH
Confidence 356788888777778889999988 77887777532 44678888867777777765
No 230
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=35.69 E-value=25 Score=29.69 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=30.3
Q ss_pred HHHHHH--hhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHH
Q 030010 39 DIKELF--SEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAV 81 (184)
Q Consensus 39 ~L~~~f--~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai 81 (184)
+|..+| +.+|.|+++.+...+.......+++.|.+.+++.+++
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 456677 3689899888766554444557789999877766644
No 231
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.98 E-value=17 Score=20.43 Aligned_cols=15 Identities=53% Similarity=0.733 Sum_probs=12.3
Q ss_pred CCCCCCChhhHhHHH
Q 030010 156 ERNEKISAEDLDADL 170 (184)
Q Consensus 156 ~r~~~~~~~~lD~el 170 (184)
.|+++.|.||||+=|
T Consensus 17 ~rnrpltDEeLD~~L 31 (47)
T 2fho_A 17 ERNRPLSDEELDAMF 31 (47)
T ss_dssp CCCCCSCTTHHHHHS
T ss_pred cccCCCCHHHHHHhC
Confidence 377899999999855
No 232
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=31.27 E-value=55 Score=25.11 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=24.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhCCCeEEE
Q 030010 23 GTKLYISNLDYGVSNEDIKELFSEVGDLKRY 53 (184)
Q Consensus 23 ~~~l~V~nLp~~~te~~L~~~f~~~G~i~~v 53 (184)
..-+.|+|||+.++...|..++.. ..+...
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 356789999999999999999987 555443
No 233
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=31.20 E-value=72 Score=26.63 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHh----hCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHh
Q 030010 33 YGVSNEDIKELFS----EVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRY 84 (184)
Q Consensus 33 ~~~te~~L~~~f~----~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l 84 (184)
.+.+.-+|..+|- .+|-|.++.+...+.......+++.|.+.++|..++..+
T Consensus 196 k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 196 KDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence 3333445666663 467788887766554455667899999999999988765
No 234
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=27.10 E-value=1e+02 Score=19.45 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=20.2
Q ss_pred CeEEEEEEeCC-CCCcceEEEEEecC
Q 030010 49 DLKRYSIHYDR-SGRSKGTAEVVYSR 73 (184)
Q Consensus 49 ~i~~v~i~~~~-~~~~~g~afV~F~~ 73 (184)
+|+.|+|..-. .++-++||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788887666 77889999999975
No 235
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=33.11 E-value=13 Score=24.57 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=32.8
Q ss_pred CCHHHHHHHHhhCCCeEEEEEEeCC-CCCc-ceEEEEEecCHHHHHHHHHHhCC
Q 030010 35 VSNEDIKELFSEVGDLKRYSIHYDR-SGRS-KGTAEVVYSRRADAVAAVKRYNN 86 (184)
Q Consensus 35 ~te~~L~~~f~~~G~i~~v~i~~~~-~~~~-~g~afV~F~~~e~a~~Ai~~l~g 86 (184)
.++++|..+..+.. +..+.+.... .++. --.-|=.|.+.++|.+|+..|..
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 45677888777775 4445555433 3332 11234489999999999998765
No 236
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=26.47 E-value=56 Score=20.70 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=25.0
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhhC
Q 030010 17 ASAIETGTKLYISNLDYGVSNEDIKELFSEV 47 (184)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~te~~L~~~f~~~ 47 (184)
+...+....|.|...+..++.++..+++.+|
T Consensus 13 ~s~lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 13 ATTLNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp ---CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred ccccCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 4577788999999999999999988888877
No 237
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=25.88 E-value=33 Score=26.51 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=25.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEEEEEE
Q 030010 24 TKLYISNLDYGVSNEDIKELFSEVGDLKRYSIH 56 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~v~i~ 56 (184)
..+.|+|||+.++...|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999865455544433
No 238
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=25.81 E-value=1.7e+02 Score=20.30 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=30.7
Q ss_pred HHHHHhhCCCeEEEEEEeCC--CCC--------------cceEEEEEecCHHHHHHHHHH
Q 030010 40 IKELFSEVGDLKRYSIHYDR--SGR--------------SKGTAEVVYSRRADAVAAVKR 83 (184)
Q Consensus 40 L~~~f~~~G~i~~v~i~~~~--~~~--------------~~g~afV~F~~~e~a~~Ai~~ 83 (184)
-..+|..||.+.-++..-+- .++ .--|.+|+|.+.+...++..+
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 34778999988776543322 222 235889999999998888754
No 239
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.25 E-value=7.2 Score=27.46 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=14.6
Q ss_pred HHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEec
Q 030010 38 EDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYS 72 (184)
Q Consensus 38 ~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~ 72 (184)
+++.++|...|.|+. ... .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkw---fn~----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKW---FNV----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEE---EET----TTTEEEEEEE
T ss_pred CcccccccceeEEEE---EEC----CCCeeEEeeC
Confidence 455566666666553 322 2678888865
No 240
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=24.75 E-value=1.1e+02 Score=24.68 Aligned_cols=57 Identities=11% Similarity=0.200 Sum_probs=37.6
Q ss_pred EEcCCCCCC----CHHHHHHHHhhCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCc
Q 030010 27 YISNLDYGV----SNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGK 92 (184)
Q Consensus 27 ~V~nLp~~~----te~~L~~~f~~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~ 92 (184)
+|+||..-. ....+.++..+||.|..+.+. +.-+|...+++.++.++.. +...+.++
T Consensus 18 liGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g--------~~~~vvv~~p~~~k~il~~-~~~~f~~r 78 (494)
T 3swz_A 18 LVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG--------TKTTVIVGHHQLAKEVLIK-KGKDFSGR 78 (494)
T ss_dssp EEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET--------TEEEEEECSHHHHHHHHTT-TTTTTBBC
T ss_pred eEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC--------CCCEEEECCHHHHHHHHHh-CcHhhCCC
Confidence 588876532 245677888899999877763 2456667888888888743 33444433
No 241
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.82 E-value=54 Score=18.55 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.5
Q ss_pred CCChhhHhHHHHHHhhHH
Q 030010 160 KISAEDLDADLDKYYSEA 177 (184)
Q Consensus 160 ~~~~~~lD~el~~y~~~~ 177 (184)
.-++|||=..|..||.|.
T Consensus 28 ~g~REElvdRLk~Y~~Qt 45 (58)
T 2do5_A 28 QGNREELVERLQSYTRQT 45 (58)
T ss_dssp CSCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhhcc
Confidence 346899999999998764
No 242
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=23.36 E-value=1.3e+02 Score=19.57 Aligned_cols=25 Identities=12% Similarity=0.292 Sum_probs=20.2
Q ss_pred CeEEEEEEeCC-CCCcceEEEEEecC
Q 030010 49 DLKRYSIHYDR-SGRSKGTAEVVYSR 73 (184)
Q Consensus 49 ~i~~v~i~~~~-~~~~~g~afV~F~~ 73 (184)
+|+.|+|..-. .++-++||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57788887666 67889999999975
No 243
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=22.86 E-value=51 Score=21.66 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=21.1
Q ss_pred cceEEEEEecCHHHHHHHHHHhCCC
Q 030010 63 SKGTAEVVYSRRADAVAAVKRYNNV 87 (184)
Q Consensus 63 ~~g~afV~F~~~e~a~~Ai~~l~g~ 87 (184)
.+||.|||=.+..++..||+.+.+.
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 5899999999999999998765543
No 244
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=22.61 E-value=60 Score=27.95 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=35.0
Q ss_pred HHHHHHHHh----hCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhC
Q 030010 37 NEDIKELFS----EVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYN 85 (184)
Q Consensus 37 e~~L~~~f~----~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~ 85 (184)
.-+|..+|- .+|.|.++.+...+......++++.|.+.++|.+++..+.
T Consensus 287 g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 287 GINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHH
Confidence 345666653 5678888877665544445678899999999998887654
No 245
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=22.54 E-value=74 Score=23.99 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=22.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhCCCeEE
Q 030010 24 TKLYISNLDYGVSNEDIKELFSEVGDLKR 52 (184)
Q Consensus 24 ~~l~V~nLp~~~te~~L~~~f~~~G~i~~ 52 (184)
..+.|+|||+.++...|..++...-.+..
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~ 119 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIAD 119 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcce
Confidence 36789999999999988888875433433
No 246
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.14 E-value=1.4e+02 Score=19.55 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=19.8
Q ss_pred CeEEEEEEeCC-CCCcceEEEEEecC
Q 030010 49 DLKRYSIHYDR-SGRSKGTAEVVYSR 73 (184)
Q Consensus 49 ~i~~v~i~~~~-~~~~~g~afV~F~~ 73 (184)
+|+.|+|..-. .++-++||-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 56778776666 77889999999975
No 247
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.78 E-value=1.7e+02 Score=19.03 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=44.5
Q ss_pred CCCCCCCHHHHHHHHh-hCCCeEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCCCccCCceEEEEEeeCCC
Q 030010 30 NLDYGVSNEDIKELFS-EVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNI 103 (184)
Q Consensus 30 nLp~~~te~~L~~~f~-~~G~i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g~~~~g~~i~V~~~~~~~ 103 (184)
.++..+.-++|..-.. .||.-..+....+ -..|-..+-++..+||+.|+-. -.-+.|+|-+..++.
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~-------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~ 89 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN-------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGS 89 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS-------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc-------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCC
Confidence 3567788888766554 6887666655422 3567888999999999987754 233456776665543
No 248
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=21.65 E-value=61 Score=20.47 Aligned_cols=33 Identities=15% Similarity=0.049 Sum_probs=24.2
Q ss_pred eEEEEEEeCCCCCcceEEEEEecCHHHHHHHHHHhCC
Q 030010 50 LKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNN 86 (184)
Q Consensus 50 i~~v~i~~~~~~~~~g~afV~F~~~e~a~~Ai~~l~g 86 (184)
|..+.+.. ...||.||++...++...+|....+
T Consensus 40 i~~v~vP~----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASE----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECT----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEec----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 55554432 3789999999999888888876554
No 249
>3uly_B Charged multivesicular BODY protein 5; beta-hairpin, ESCRT-III, CHMPS, membrane protein-transport P complex, BROX; 2.60A {Homo sapiens} PDB: 3um1_B
Probab=21.62 E-value=45 Score=20.23 Aligned_cols=14 Identities=36% Similarity=0.762 Sum_probs=11.7
Q ss_pred CCChhhHhHHHHHH
Q 030010 160 KISAEDLDADLDKY 173 (184)
Q Consensus 160 ~~~~~~lD~el~~y 173 (184)
....+||++||+.-
T Consensus 7 diDE~eL~aELdaL 20 (69)
T 3uly_B 7 ELDEDDLEAELDAL 20 (69)
T ss_pred CCCHHHHHHHHHHH
Confidence 47889999999864
No 250
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=20.24 E-value=1.9e+02 Score=18.82 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHhh-CC---CeEEEEEEeCC--CCCcceEEEEEecCHHHHHH
Q 030010 33 YGVSNEDIKELFSE-VG---DLKRYSIHYDR--SGRSKGTAEVVYSRRADAVA 79 (184)
Q Consensus 33 ~~~te~~L~~~f~~-~G---~i~~v~i~~~~--~~~~~g~afV~F~~~e~a~~ 79 (184)
.+++..+|++.+++ |+ .+..|.-+... .+++.|||.| |.+.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45778888777763 43 23334333333 4567777754 677777655
Done!