Your job contains 1 sequence.
>030012
MRPGALGLVDTAGVGVHPEPGMVGITAVASVKGYSSPLPDPNLIGQRRDIAPGINPTIPD
VINGVPSSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPR
RTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAHFPFHLPSDGDEK
CTPR
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030012
(184 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2025232 - symbol:AT1G76940 species:3702 "Arabi... 277 3.3e-24 1
TAIR|locus:2014937 - symbol:AT1G21320 species:3702 "Arabi... 272 1.7e-23 1
UNIPROTKB|F1P2M9 - symbol:RBPMS2 "Uncharacterized protein... 145 3.2e-10 1
MGI|MGI:1919223 - symbol:Rbpms2 "RNA binding protein with... 141 8.4e-10 1
ZFIN|ZDB-GENE-040426-741 - symbol:rbpms2b "RNA binding pr... 139 1.4e-09 1
UNIPROTKB|Q9YGP5 - symbol:rbpms "RNA-binding protein with... 137 2.2e-09 1
MGI|MGI:1334446 - symbol:Rbpms "RNA binding protein gene ... 137 2.2e-09 1
ZFIN|ZDB-GENE-040718-106 - symbol:rbpms2a "RNA binding pr... 137 2.2e-09 1
UNIPROTKB|Q9W6I1 - symbol:RBPMS "RNA-binding protein with... 136 2.9e-09 1
UNIPROTKB|F1MAV3 - symbol:RBPMS "Uncharacterized protein"... 136 2.9e-09 1
UNIPROTKB|E2QU21 - symbol:RBPMS2 "Uncharacterized protein... 135 3.6e-09 1
UNIPROTKB|F5H357 - symbol:RBPMS "RNA-binding protein with... 135 3.6e-09 1
UNIPROTKB|Q93062 - symbol:RBPMS "RNA-binding protein with... 135 3.6e-09 1
UNIPROTKB|F1RX64 - symbol:RBPMS "Uncharacterized protein"... 135 3.6e-09 1
UNIPROTKB|E2R5F7 - symbol:RBPMS "Uncharacterized protein"... 135 3.9e-09 1
UNIPROTKB|B4E3T4 - symbol:RBPMS "HCG2043421, isoform CRA_... 135 4.5e-09 1
UNIPROTKB|Q6ZRY4 - symbol:RBPMS2 "RNA-binding protein wit... 134 7.5e-09 1
UNIPROTKB|F1NZ89 - symbol:RBPMS2 "Uncharacterized protein... 130 1.2e-08 1
UNIPROTKB|H0YBU9 - symbol:RBPMS "RNA-binding protein with... 127 2.6e-08 1
RGD|1561067 - symbol:Rbpms "RNA binding protein with mult... 127 2.6e-08 1
UNIPROTKB|F1M7J8 - symbol:Rbpms "Protein Rbpms" species:1... 127 2.6e-08 1
TAIR|locus:2065742 - symbol:U2B'' "U2 small nuclear ribon... 131 9.4e-08 1
RGD|1561222 - symbol:Rbpms2 "RNA binding protein with mul... 125 1.9e-07 1
UNIPROTKB|F1NAP9 - symbol:RBPMS "RNA-binding protein with... 127 2.0e-07 1
UNIPROTKB|F1M9Y9 - symbol:Rbpms "Protein Rbpms" species:1... 127 2.1e-07 1
UNIPROTKB|F1N2U8 - symbol:RBPMS2 "Uncharacterized protein... 127 2.5e-07 1
UNIPROTKB|F1S0B2 - symbol:RBPMS2 "Uncharacterized protein... 125 4.4e-07 1
RGD|1307416 - symbol:Snrpa "small nuclear ribonucleoprote... 129 4.5e-07 1
UNIPROTKB|F1M6Z8 - symbol:Snrpa "Protein Snrpa" species:1... 129 4.7e-07 1
UNIPROTKB|P09012 - symbol:SNRPA "U1 small nuclear ribonuc... 127 9.2e-07 1
UNIPROTKB|Q06AA4 - symbol:SNRPA "U1 small nuclear ribonuc... 124 2.7e-06 1
MGI|MGI:1855690 - symbol:Snrpa "small nuclear ribonucleop... 123 4.2e-06 1
UNIPROTKB|Q2KIR1 - symbol:SNRPA "U1 small nuclear ribonuc... 122 5.5e-06 1
UNIPROTKB|B8AM21 - symbol:OsI_11177 "U2 small nuclear rib... 117 1.6e-05 1
UNIPROTKB|Q10MR0 - symbol:LOC_Os03g18720 "U2 small nuclea... 117 1.6e-05 1
DICTYBASE|DDB_G0268988 - symbol:DDB_G0268988 "RNA-binding... 120 1.7e-05 1
TAIR|locus:2060015 - symbol:AT2G42240 species:3702 "Arabi... 118 2.4e-05 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 110 6.5e-05 1
FB|FBgn0263995 - symbol:cpo "couch potato" species:7227 "... 117 0.00013 1
TAIR|locus:2007417 - symbol:AT1G06960 species:3702 "Arabi... 110 0.00013 1
ZFIN|ZDB-GENE-030131-2841 - symbol:snrpa "small nuclear r... 111 0.00016 1
SGD|S000005141 - symbol:WHI3 "RNA binding protein that se... 115 0.00020 1
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 110 0.00035 1
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 110 0.00039 1
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 110 0.00039 1
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 110 0.00039 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 109 0.00044 1
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 109 0.00048 1
RGD|628611 - symbol:Elavl2 "ELAV (embryonic lethal, abnor... 108 0.00062 1
UNIPROTKB|Q8CH84 - symbol:Elavl2 "ELAV-like protein 2" sp... 108 0.00062 1
FB|FBgn0003449 - symbol:snf "sans fille" species:7227 "Dr... 104 0.00068 1
>TAIR|locus:2025232 [details] [associations]
symbol:AT1G76940 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0017069 PANTHER:PTHR10501
EMBL:BT029526 IPI:IPI00547369 RefSeq:NP_177820.2 UniGene:At.45990
ProteinModelPortal:A1A6K6 SMR:A1A6K6 PaxDb:A1A6K6 PRIDE:A1A6K6
EnsemblPlants:AT1G76940.1 GeneID:844029 KEGG:ath:AT1G76940
TAIR:At1g76940 eggNOG:NOG274612 HOGENOM:HOG000116598
InParanoid:A1A6K6 OMA:DPIVLCF PhylomeDB:A1A6K6
ProtClustDB:CLSN2680654 Genevestigator:A1A6K6 Uniprot:A1A6K6
Length = 233
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 51/99 (51%), Positives = 73/99 (73%)
Query: 77 LKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPR-RTGDRAMVLCFVEFD 135
L SN L+V+GLP++C+RREV+H+FRPFVGYRE+R++ K+ + R GD +VLCFV+F
Sbjct: 130 LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGD-PIVLCFVDFT 188
Query: 136 DPKCARTAMDALHGYKFDDKKPDSPTLKIQFAHFPFHLP 174
+P CA TA+ AL GY+ D+ + DS L++QF+ P P
Sbjct: 189 NPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRP 227
>TAIR|locus:2014937 [details] [associations]
symbol:AT1G21320 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0017069 InterPro:IPR008889 Pfam:PF05678
PANTHER:PTHR10501 IPI:IPI00517769 RefSeq:NP_173554.3
UniGene:At.64837 ProteinModelPortal:F4HWF9 SMR:F4HWF9 PRIDE:F4HWF9
EnsemblPlants:AT1G21320.1 GeneID:838729 KEGG:ath:AT1G21320
OMA:QNRGFER ArrayExpress:F4HWF9 Uniprot:F4HWF9
Length = 421
Score = 272 (100.8 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 50/96 (52%), Positives = 72/96 (75%)
Query: 76 PLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPR-RTGDRAMVLCFVEF 134
PL SN L+V+GLP++C+RREVSH+FRPFVGYRE+R++ ++ + R+GD VLCFV+F
Sbjct: 316 PLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPT-VLCFVDF 374
Query: 135 DDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAHFP 170
++ CA TA+ AL Y+ D+ +PDS L++QF P
Sbjct: 375 ENSACAATALSALQDYRMDEDEPDSKILRLQFFRNP 410
>UNIPROTKB|F1P2M9 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00591826
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:AADN02051088
Ensembl:ENSGALT00000040332 Uniprot:F1P2M9
Length = 198
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 43/106 (40%), Positives = 55/106 (51%)
Query: 65 VPSSLRNNAGSPLKKG-ESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRR 121
VP N S L+ G E LFV GLP D RE+ LFRPF GY I++ K+P
Sbjct: 1 VPWKCDRNVNSRLELGQEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQP-- 58
Query: 122 TGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
G FV FD A A +AL+G +FD + P TL+++FA
Sbjct: 59 VG-------FVTFDSRAGAEAAKNALNGIRFDPENPQ--TLRLEFA 95
>MGI|MGI:1919223 [details] [associations]
symbol:Rbpms2 "RNA binding protein with multiple splicing 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919223 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204 CTD:348093
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
HSSP:P09012 OMA:KLTSRQP EMBL:AK144659 EMBL:AK156633 EMBL:BC021788
IPI:IPI00121434 RefSeq:NP_082306.2 UniGene:Mm.29148
ProteinModelPortal:Q8VC52 SMR:Q8VC52 PhosphoSite:Q8VC52
PaxDb:Q8VC52 PRIDE:Q8VC52 DNASU:71973 Ensembl:ENSMUST00000055844
GeneID:71973 KEGG:mmu:71973 UCSC:uc009qdt.1
GeneTree:ENSGT00500000044861 InParanoid:Q8VC52 NextBio:335098
Bgee:Q8VC52 CleanEx:MM_RBPMS2 Genevestigator:Q8VC52 Uniprot:Q8VC52
Length = 206
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 40/96 (41%), Positives = 54/96 (56%)
Query: 74 GSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRTGDRAMVLCF 131
GSPL++ E LFV GLP D RE+ LFRPF GY I++ ++P G F
Sbjct: 17 GSPLEE-EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQP--VG-------F 66
Query: 132 VEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
V FD A A +AL+G +FD + P TL+++FA
Sbjct: 67 VIFDSRAGAEAAKNALNGIRFDPENPQ--TLRLEFA 100
>ZFIN|ZDB-GENE-040426-741 [details] [associations]
symbol:rbpms2b "RNA binding protein with multiple
splicing 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-741 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
GeneTree:ENSGT00500000044861 EMBL:BX663612 EMBL:CR354581
EMBL:BC048876 EMBL:BC066414 EMBL:AB080736 IPI:IPI00498043
RefSeq:NP_956553.1 UniGene:Dr.81683 STRING:Q7ZUL7
Ensembl:ENSDART00000006619 GeneID:393229 KEGG:dre:393229 CTD:393229
OMA:TDIKPRE NextBio:20814293 Uniprot:Q7ZUL7
Length = 200
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 42/105 (40%), Positives = 55/105 (52%)
Query: 65 VPSSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRT 122
V S N L++ E LFV GLPTD RE+ LFRPF GY I++ K+P
Sbjct: 3 VKSDSEPNNNVSLEE-EVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSKQP--V 59
Query: 123 GDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
G FV FD A A +AL+G +FD + P TL+++FA
Sbjct: 60 G-------FVTFDSRSGAEAAKNALNGVRFDPENPQ--TLRLEFA 95
>UNIPROTKB|Q9YGP5 [details] [associations]
symbol:rbpms "RNA-binding protein with multiple splicing"
species:8355 "Xenopus laevis" [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=ISS]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
GO:GO:0008143 HOVERGEN:HBG069897 CTD:11030 EMBL:AF107889
EMBL:BC097507 RefSeq:NP_001081864.1 UniGene:Xl.449
ProteinModelPortal:Q9YGP5 GeneID:398092 KEGG:xla:398092
Uniprot:Q9YGP5
Length = 196
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 40/108 (37%), Positives = 60/108 (55%)
Query: 62 INGVPSSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEP 119
++G+ S +N + +++ E LFV GLP D RE+ LFRPF GY I++ K+P
Sbjct: 1 MSGIKSDTEHNNNN-IEE-EVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQP 58
Query: 120 RRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
G FV FD+ A A +AL+G +FD + P TL+++FA
Sbjct: 59 --VG-------FVTFDNRAGAEAAKNALNGIRFDPENPQ--TLRLEFA 95
>MGI|MGI:1334446 [details] [associations]
symbol:Rbpms "RNA binding protein gene with multiple
splicing" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0010862 "positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=ISO] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1334446 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003713
GO:GO:0010862 GO:GO:0060391 GO:GO:0008143 HOGENOM:HOG000017369
HOVERGEN:HBG069897 CTD:11030 eggNOG:NOG292253 OrthoDB:EOG4NGGNV
ChiTaRS:RBPMS EMBL:AF148511 EMBL:AK012265 EMBL:AK012586
EMBL:AK041118 EMBL:AC123616 EMBL:AC127551 EMBL:AC162523
EMBL:BC030397 IPI:IPI00122127 IPI:IPI00125806 IPI:IPI00132006
RefSeq:NP_001036139.1 RefSeq:NP_001036140.1 RefSeq:NP_062707.1
UniGene:Mm.323997 ProteinModelPortal:Q9WVB0 SMR:Q9WVB0
STRING:Q9WVB0 PaxDb:Q9WVB0 PRIDE:Q9WVB0 Ensembl:ENSMUST00000033994
Ensembl:ENSMUST00000033995 Ensembl:ENSMUST00000053251 GeneID:19663
KEGG:mmu:19663 NextBio:296958 CleanEx:MM_RBPMS
Genevestigator:Q9WVB0 GermOnline:ENSMUSG00000031586 Uniprot:Q9WVB0
Length = 197
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 42/110 (38%), Positives = 58/110 (52%)
Query: 62 INGVPSSLRNNAGSP--LKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHK 117
+NG + + N S L++ E LFV GLP D RE+ LFRPF GY I++ K
Sbjct: 1 MNGGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK 60
Query: 118 EPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
+P G FV FD A A +AL+G +FD + P TL+++FA
Sbjct: 61 QP--VG-------FVSFDSRSEAEAAKNALNGIRFDPEIPQ--TLRLEFA 99
>ZFIN|ZDB-GENE-040718-106 [details] [associations]
symbol:rbpms2a "RNA binding protein with multiple
splicing 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040718-106 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:BX296538
EMBL:CU570688 EMBL:BC076171 EMBL:BC152178 IPI:IPI00486507
RefSeq:NP_001002409.1 UniGene:Dr.82744 STRING:Q6DH13
Ensembl:ENSDART00000067514 GeneID:436682 KEGG:dre:436682 CTD:436682
InParanoid:Q6DH13 NextBio:20831125 Uniprot:Q6DH13
Length = 199
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 42/104 (40%), Positives = 55/104 (52%)
Query: 67 SSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRTGD 124
S N L++ E LFV GLP D RE+ LFRPF GY I++ K+P G
Sbjct: 5 SDSETNTSVSLEE-EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQP--VG- 60
Query: 125 RAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP-TLKIQFA 167
FV FD A A +AL+G +FD P+SP TL+++FA
Sbjct: 61 ------FVTFDSRSGAEAAKNALNGIRFD---PESPQTLRLEFA 95
>UNIPROTKB|Q9W6I1 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple splicing"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0010862 "positive
regulation of pathway-restricted SMAD protein phosphorylation"
evidence=ISS] [GO:0060391 "positive regulation of SMAD protein
import into nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
eggNOG:NOG255204 GO:GO:0008143 EMBL:AF129933 IPI:IPI00591826
RefSeq:NP_990200.1 UniGene:Gga.2695 ProteinModelPortal:Q9W6I1
GeneID:395678 KEGG:gga:395678 CTD:348093 HOGENOM:HOG000017369
HOVERGEN:HBG069897 InParanoid:Q9W6I1 OrthoDB:EOG42RD8G
NextBio:20815750 Uniprot:Q9W6I1
Length = 200
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 39/98 (39%), Positives = 53/98 (54%)
Query: 72 NAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRTGDRAMVL 129
N G +++ E LFV GLP D RE+ LFRPF GY I++ K+P G
Sbjct: 12 NGGGNVEE-EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQP--VG------ 62
Query: 130 CFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
FV FD A A +AL+G +FD + P TL+++FA
Sbjct: 63 -FVTFDSRAGAEAAKNALNGIRFDPENPQ--TLRLEFA 97
>UNIPROTKB|F1MAV3 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060391 "positive regulation of SMAD protein import
into nucleus" evidence=IEA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:DAAA02060452 IPI:IPI00722097
UniGene:Bt.106824 Ensembl:ENSBTAT00000047899 Uniprot:F1MAV3
Length = 219
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 41/108 (37%), Positives = 55/108 (50%)
Query: 63 NGVPSSLRNNAGSP-LKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEP 119
NG + N L++ E LFV GLP D RE+ LFRPF GY I++ K+P
Sbjct: 3 NGSKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP 62
Query: 120 RRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
G FV FD A A +AL+G +FD + P TL+++FA
Sbjct: 63 --VG-------FVSFDSRSEAEAAKNALNGIRFDPEIPQ--TLRLEFA 99
>UNIPROTKB|E2QU21 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:348093
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:AAEX03016208
RefSeq:XP_853385.2 Ensembl:ENSCAFT00000027080 GeneID:610746
KEGG:cfa:610746 NextBio:20896295 Uniprot:E2QU21
Length = 214
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 40/111 (36%), Positives = 57/111 (51%)
Query: 59 PDVINGVPSSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIH 116
P G + + +G L++ E LFV GLP D RE+ LFRPF GY I++
Sbjct: 12 PGTGTGTGTGTGSGSGGALEE-EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTS 70
Query: 117 KEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
++P G FV FD A A +AL+G +FD + P TL+++FA
Sbjct: 71 RQP--VG-------FVIFDSRAGAEAAKNALNGIRFDPENPQ--TLRLEFA 110
>UNIPROTKB|F5H357 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00414709 HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945
EMBL:AC011204 EMBL:AC109329 ProteinModelPortal:F5H357 SMR:F5H357
PRIDE:F5H357 Ensembl:ENST00000538486 ArrayExpress:F5H357
Bgee:F5H357 Uniprot:F5H357
Length = 153
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 41/108 (37%), Positives = 55/108 (50%)
Query: 63 NGVPSSLRNNAGSP-LKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEP 119
NG + N L++ E LFV GLP D RE+ LFRPF GY I++ K+P
Sbjct: 3 NGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP 62
Query: 120 RRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
G FV FD A A +AL+G +FD + P TL+++FA
Sbjct: 63 --VG-------FVSFDSRSEAEAAKNALNGIRFDPEIPQ--TLRLEFA 99
>UNIPROTKB|Q93062 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IDA]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IDA] [GO:0008143 "poly(A) RNA binding"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
EMBL:CH471080 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0006396 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
GO:GO:0008143 HOGENOM:HOG000017369 HOVERGEN:HBG069897 EMBL:D84110
EMBL:D84107 EMBL:D84108 EMBL:D84109 EMBL:D84111 EMBL:BC003608
IPI:IPI00004045 IPI:IPI00101800 IPI:IPI00216935 IPI:IPI00216936
IPI:IPI00414709 PIR:JC6127 RefSeq:NP_001008710.1
RefSeq:NP_001008711.1 RefSeq:NP_001008712.1 RefSeq:NP_006858.1
UniGene:Hs.334587 PDB:1BNY PDBsum:1BNY ProteinModelPortal:Q93062
SMR:Q93062 IntAct:Q93062 MINT:MINT-1434067 STRING:Q93062
DMDM:13124469 PaxDb:Q93062 PRIDE:Q93062 Ensembl:ENST00000287771
Ensembl:ENST00000320203 Ensembl:ENST00000339877
Ensembl:ENST00000397323 GeneID:11030 KEGG:hsa:11030 UCSC:uc003xib.3
UCSC:uc003xic.1 UCSC:uc003xid.1 CTD:11030 GeneCards:GC08P030242
HGNC:HGNC:19097 MIM:601558 neXtProt:NX_Q93062 PharmGKB:PA134985584
eggNOG:NOG292253 OMA:PEVWGPY OrthoDB:EOG4NGGNV ChiTaRS:RBPMS
GenomeRNAi:11030 NextBio:41912 ArrayExpress:Q93062 Bgee:Q93062
CleanEx:HS_RBPMS Genevestigator:Q93062 GermOnline:ENSG00000157110
Uniprot:Q93062
Length = 196
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 41/108 (37%), Positives = 55/108 (50%)
Query: 63 NGVPSSLRNNAGSP-LKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEP 119
NG + N L++ E LFV GLP D RE+ LFRPF GY I++ K+P
Sbjct: 3 NGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP 62
Query: 120 RRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
G FV FD A A +AL+G +FD + P TL+++FA
Sbjct: 63 --VG-------FVSFDSRSEAEAAKNALNGIRFDPEIPQ--TLRLEFA 99
>UNIPROTKB|F1RX64 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060391 "positive regulation of SMAD protein import
into nucleus" evidence=IEA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:CU914373 EMBL:FP236445
Ensembl:ENSSSCT00000017254 Uniprot:F1RX64
Length = 215
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 41/108 (37%), Positives = 55/108 (50%)
Query: 63 NGVPSSLRNNAGSP-LKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEP 119
NG + N L++ E LFV GLP D RE+ LFRPF GY I++ K+P
Sbjct: 3 NGGKAEKENTPNEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP 62
Query: 120 RRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
G FV FD A A +AL+G +FD + P TL+++FA
Sbjct: 63 --VG-------FVSFDSRSEAEAAKNALNGIRFDPEIPQ--TLRLEFA 99
>UNIPROTKB|E2R5F7 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060391 "positive regulation of SMAD protein
import into nucleus" evidence=IEA] [GO:0010862 "positive regulation
of pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 CTD:11030 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:AAEX03010423 EMBL:AAEX03010424
RefSeq:XP_532815.3 ProteinModelPortal:E2R5F7 PRIDE:E2R5F7
Ensembl:ENSCAFT00000010500 GeneID:475599 KEGG:cfa:475599
NextBio:20851407 Uniprot:E2R5F7
Length = 219
Score = 135 (52.6 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 41/108 (37%), Positives = 55/108 (50%)
Query: 63 NGVPSSLRNNAGSP-LKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEP 119
NG + N L++ E LFV GLP D RE+ LFRPF GY I++ K+P
Sbjct: 3 NGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP 62
Query: 120 RRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
G FV FD A A +AL+G +FD + P TL+++FA
Sbjct: 63 --VG-------FVSFDSRSEAEAAKNALNGIRFDPEIPQ--TLRLEFA 99
>UNIPROTKB|B4E3T4 [details] [associations]
symbol:RBPMS "HCG2043421, isoform CRA_c" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471080 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000017369 HOVERGEN:HBG069897 UniGene:Hs.334587
HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945 EMBL:AC011204
EMBL:AC109329 EMBL:AK304858 IPI:IPI00908913 SMR:B4E3T4
STRING:B4E3T4 Ensembl:ENST00000517860 UCSC:uc011lba.1
Uniprot:B4E3T4
Length = 224
Score = 135 (52.6 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 41/108 (37%), Positives = 55/108 (50%)
Query: 63 NGVPSSLRNNAGSP-LKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEP 119
NG + N L++ E LFV GLP D RE+ LFRPF GY I++ K+P
Sbjct: 3 NGGKAEKENTPSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP 62
Query: 120 RRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
G FV FD A A +AL+G +FD + P TL+++FA
Sbjct: 63 --VG-------FVSFDSRSEAEAAKNALNGIRFDPEIPQ--TLRLEFA 99
>UNIPROTKB|Q6ZRY4 [details] [associations]
symbol:RBPMS2 "RNA-binding protein with multiple splicing
2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:NOG255204 CTD:348093 HOGENOM:HOG000017369 HOVERGEN:HBG069897
OrthoDB:EOG42RD8G EMBL:AY369207 EMBL:AK127873 IPI:IPI00238688
RefSeq:NP_919248.1 UniGene:Hs.436518 HSSP:P09012
ProteinModelPortal:Q6ZRY4 SMR:Q6ZRY4 STRING:Q6ZRY4
PhosphoSite:Q6ZRY4 DMDM:74762401 PaxDb:Q6ZRY4 PRIDE:Q6ZRY4
DNASU:348093 Ensembl:ENST00000300069 GeneID:348093 KEGG:hsa:348093
UCSC:uc002anq.3 GeneCards:GC15M065032 HGNC:HGNC:19098
neXtProt:NX_Q6ZRY4 PharmGKB:PA134871904 InParanoid:Q6ZRY4
OMA:KLTSRQP PhylomeDB:Q6ZRY4 ChiTaRS:RBPMS2 GenomeRNAi:348093
NextBio:99336 ArrayExpress:Q6ZRY4 Bgee:Q6ZRY4 CleanEx:HS_RBPMS2
Genevestigator:Q6ZRY4 Uniprot:Q6ZRY4
Length = 209
Score = 134 (52.2 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 42/112 (37%), Positives = 58/112 (51%)
Query: 59 PDVINGVPSSLRNNAGSP-LKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVI 115
PD +G + + AGS + E LFV GLP D RE+ LFRPF GY I++
Sbjct: 6 PDGEHGGSTGTGSGAGSGGALEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLT 65
Query: 116 HKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
++P G FV FD A A +AL+G +FD + P TL+++FA
Sbjct: 66 ARQP--VG-------FVIFDSRAGAEAAKNALNGIRFDPENPQ--TLRLEFA 106
>UNIPROTKB|F1NZ89 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 EMBL:AADN02051088 IPI:IPI00819063
Ensembl:ENSGALT00000003715 Uniprot:F1NZ89
Length = 180
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 36/85 (42%), Positives = 47/85 (55%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRTGDRAMVLCFVEFDDPKCART 142
LFV GLP D RE+ LFRPF GY I++ K+P G FV FD A
Sbjct: 4 LFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQP--VG-------FVTFDSRAGAEA 54
Query: 143 AMDALHGYKFDDKKPDSPTLKIQFA 167
A +AL+G +FD + P TL+++FA
Sbjct: 55 AKNALNGIRFDPENPQ--TLRLEFA 77
>UNIPROTKB|H0YBU9 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945 EMBL:AC011204
EMBL:AC109329 Ensembl:ENST00000519359 Uniprot:H0YBU9
Length = 119
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 36/85 (42%), Positives = 47/85 (55%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRTGDRAMVLCFVEFDDPKCART 142
LFV GLP D RE+ LFRPF GY I++ K+P G FV FD A
Sbjct: 2 LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP--VG-------FVSFDSRSEAEA 52
Query: 143 AMDALHGYKFDDKKPDSPTLKIQFA 167
A +AL+G +FD + P TL+++FA
Sbjct: 53 AKNALNGIRFDPEIPQ--TLRLEFA 75
>RGD|1561067 [details] [associations]
symbol:Rbpms "RNA binding protein with multiple splicing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA;ISO] [GO:0008143 "poly(A) RNA binding"
evidence=IEA;ISO] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA;ISO]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561067
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00959368
Ensembl:ENSRNOT00000068011 Uniprot:F2Z3S5
Length = 110
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 36/85 (42%), Positives = 47/85 (55%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRTGDRAMVLCFVEFDDPKCART 142
LFV GLP D RE+ LFRPF GY I++ K+P G FV FD A
Sbjct: 4 LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP--VG-------FVSFDSRSEAEA 54
Query: 143 AMDALHGYKFDDKKPDSPTLKIQFA 167
A +AL+G +FD + P TL+++FA
Sbjct: 55 AKNALNGIRFDPEIPQ--TLRLEFA 77
>UNIPROTKB|F1M7J8 [details] [associations]
symbol:Rbpms "Protein Rbpms" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1561067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00767399
Ensembl:ENSRNOT00000046138 ArrayExpress:F1M7J8 Uniprot:F1M7J8
Length = 175
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 36/85 (42%), Positives = 47/85 (55%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRTGDRAMVLCFVEFDDPKCART 142
LFV GLP D RE+ LFRPF GY I++ K+P G FV FD A
Sbjct: 4 LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP--VG-------FVSFDSRSEAEA 54
Query: 143 AMDALHGYKFDDKKPDSPTLKIQFA 167
A +AL+G +FD + P TL+++FA
Sbjct: 55 AKNALNGIRFDPEIPQ--TLRLEFA 77
>TAIR|locus:2065742 [details] [associations]
symbol:U2B'' "U2 small nuclear ribonucleoprotein B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0015030 "Cajal body"
evidence=IDA] [GO:0005686 "U2 snRNP" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 EMBL:AC002338
GO:GO:0017069 GO:GO:0005686 GO:GO:0000354 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:BT003068 EMBL:AK227609 EMBL:AY087401
IPI:IPI00546965 PIR:C84706 RefSeq:NP_180585.1 UniGene:At.19782
ProteinModelPortal:O22922 SMR:O22922 IntAct:O22922 STRING:O22922
PaxDb:O22922 PRIDE:O22922 EnsemblPlants:AT2G30260.1 GeneID:817576
KEGG:ath:AT2G30260 GeneFarm:4539 TAIR:At2g30260 InParanoid:O22922
KO:K11094 OMA:TTANKKP PhylomeDB:O22922 Genevestigator:O22922
Uniprot:O22922
Length = 232
Score = 131 (51.2 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 36/112 (32%), Positives = 55/112 (49%)
Query: 46 QRRDIAPGINPTIPDVINGVPSSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRP 105
QR + A G + P NGVP+ +G +N+LF+ LP + T + LF
Sbjct: 122 QRPNTANGPSANGPSANNGVPAPSFQPSGQETMP-PNNILFIQNLPHETTSMMLQLLFEQ 180
Query: 106 FVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157
+ G++EIR+I +P G + FVE++D A AM L G+K + P
Sbjct: 181 YPGFKEIRMIDAKP---G-----IAFVEYEDDVQASIAMQPLQGFKITPQNP 224
>RGD|1561222 [details] [associations]
symbol:Rbpms2 "RNA binding protein with multiple splicing 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1561222 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:KLTSRQP GeneTree:ENSGT00500000044861
IPI:IPI00766399 Ensembl:ENSRNOT00000021337 UCSC:RGD:1561222
ArrayExpress:F1M9N3 Uniprot:F1M9N3
Length = 181
Score = 125 (49.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 35/85 (41%), Positives = 47/85 (55%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRTGDRAMVLCFVEFDDPKCART 142
LFV GLP D RE+ LFRPF GY I++ ++P G FV FD A
Sbjct: 4 LFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQP--VG-------FVIFDSRAGAEA 54
Query: 143 AMDALHGYKFDDKKPDSPTLKIQFA 167
A +AL+G +FD + P TL+++FA
Sbjct: 55 AKNALNGIRFDPENPQ--TLRLEFA 77
>UNIPROTKB|F1NAP9 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0010862 "positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=IEA] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:AADN02016141 IPI:IPI00588016
Ensembl:ENSGALT00000016744 Uniprot:F1NAP9
Length = 196
Score = 127 (49.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 36/85 (42%), Positives = 47/85 (55%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRTGDRAMVLCFVEFDDPKCART 142
LFV GLP D RE+ LFRPF GY I++ K+P G FV FD A
Sbjct: 26 LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP--VG-------FVSFDSRSEAEA 76
Query: 143 AMDALHGYKFDDKKPDSPTLKIQFA 167
A +AL+G +FD + P TL+++FA
Sbjct: 77 AKNALNGIRFDPEIPQ--TLRLEFA 99
>UNIPROTKB|F1M9Y9 [details] [associations]
symbol:Rbpms "Protein Rbpms" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0010862
"positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=IEA] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1561067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713
GO:GO:0010862 GO:GO:0060391 GO:GO:0008143
GeneTree:ENSGT00500000044861 IPI:IPI00364663
Ensembl:ENSRNOT00000017883 ArrayExpress:F1M9Y9 Uniprot:F1M9Y9
Length = 198
Score = 127 (49.8 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 36/85 (42%), Positives = 47/85 (55%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRTGDRAMVLCFVEFDDPKCART 142
LFV GLP D RE+ LFRPF GY I++ K+P G FV FD A
Sbjct: 4 LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP--VG-------FVSFDSRSEAEA 54
Query: 143 AMDALHGYKFDDKKPDSPTLKIQFA 167
A +AL+G +FD + P TL+++FA
Sbjct: 55 AKNALNGIRFDPEIPQ--TLRLEFA 77
>UNIPROTKB|F1N2U8 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KLTSRQP
GeneTree:ENSGT00500000044861 EMBL:DAAA02028733 IPI:IPI00688079
Ensembl:ENSBTAT00000014659 Uniprot:F1N2U8
Length = 203
Score = 127 (49.8 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 36/89 (40%), Positives = 48/89 (53%)
Query: 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRTGDRAMVLCFVEFDDPK 138
E LFV GLP D RE+ LFRPF GY I++ ++P G FV FD
Sbjct: 23 EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQP--VG-------FVIFDSRA 73
Query: 139 CARTAMDALHGYKFDDKKPDSPTLKIQFA 167
A A +AL+G +FD + P TL+++FA
Sbjct: 74 GAEAAKNALNGIRFDPENPQ--TLRLEFA 100
>UNIPROTKB|F1S0B2 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KLTSRQP
GeneTree:ENSGT00500000044861 EMBL:CU633631
Ensembl:ENSSSCT00000005024 Uniprot:F1S0B2
Length = 195
Score = 125 (49.1 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 35/85 (41%), Positives = 47/85 (55%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRTGDRAMVLCFVEFDDPKCART 142
LFV GLP D RE+ LFRPF GY I++ ++P G FV FD A
Sbjct: 18 LFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQP--VG-------FVIFDSRAGAEA 68
Query: 143 AMDALHGYKFDDKKPDSPTLKIQFA 167
A +AL+G +FD + P TL+++FA
Sbjct: 69 AKNALNGIRFDPENPQ--TLRLEFA 91
>RGD|1307416 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307416
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:CH473979 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OrthoDB:EOG498V1W IPI:IPI00364044 EMBL:BC086331
RefSeq:NP_001008304.1 UniGene:Rn.9347 SMR:Q5U214 STRING:Q5U214
GeneID:292729 KEGG:rno:292729 UCSC:RGD:1307416 InParanoid:Q5U214
NextBio:634621 Genevestigator:Q5U214 Uniprot:Q5U214
Length = 281
Score = 129 (50.5 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 50/161 (31%), Positives = 72/161 (44%)
Query: 14 VG-VHPEPGMVGITAVASVKGY--SSP--LPDPNLIGQRRDIAPG-INPTIPDVINGVPS 67
VG V P PGM +T + + P +P P +I +APG I P +P
Sbjct: 134 VGAVQPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPP-GLAPGQIPPGAMPPQQLMPG 192
Query: 68 SLRNNAGSPLKKGESN-LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRA 126
+ PL + N +LF+ LP + +S LF F G++E+R++ P R
Sbjct: 193 QMP--PAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV---PGRHD--- 244
Query: 127 MVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
+ FVEFD+ A A DAL G+K +KI FA
Sbjct: 245 --IAFVEFDNEVQAGAARDALQGFKITQNN----AMKISFA 279
>UNIPROTKB|F1M6Z8 [details] [associations]
symbol:Snrpa "Protein Snrpa" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0000398 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 OMA:MSQAPRM IPI:IPI00364044 PRIDE:F1M6Z8
Ensembl:ENSRNOT00000002053 ArrayExpress:F1M6Z8 Uniprot:F1M6Z8
Length = 285
Score = 129 (50.5 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 50/161 (31%), Positives = 72/161 (44%)
Query: 14 VG-VHPEPGMVGITAVASVKGY--SSP--LPDPNLIGQRRDIAPG-INPTIPDVINGVPS 67
VG V P PGM +T + + P +P P +I +APG I P +P
Sbjct: 138 VGAVQPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPP-GLAPGQIPPGAMPPQQLMPG 196
Query: 68 SLRNNAGSPLKKGESN-LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRA 126
+ PL + N +LF+ LP + +S LF F G++E+R++ P R
Sbjct: 197 QMP--PAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV---PGRHD--- 248
Query: 127 MVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
+ FVEFD+ A A DAL G+K +KI FA
Sbjct: 249 --IAFVEFDNEVQAGAARDALQGFKITQNN----AMKISFA 283
>UNIPROTKB|P09012 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0000398 GO:GO:0017069
eggNOG:NOG317159 PANTHER:PTHR10501 PDB:3PGW PDBsum:3PGW
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:M60784 EMBL:M60779 EMBL:M60780
EMBL:M60781 EMBL:M60782 EMBL:M60783 EMBL:X06347 EMBL:BC000405
EMBL:BC008290 IPI:IPI00012382 PIR:JQ1528 RefSeq:NP_004587.1
UniGene:Hs.466775 PDB:1AUD PDB:1CX0 PDB:1DRZ PDB:1DZ5 PDB:1FHT
PDB:1M5K PDB:1M5O PDB:1M5P PDB:1M5V PDB:1NU4 PDB:1OIA PDB:1SJ3
PDB:1SJ4 PDB:1SJF PDB:1U6B PDB:1URN PDB:1VBX PDB:1VBY PDB:1VBZ
PDB:1VC0 PDB:1VC5 PDB:1VC6 PDB:1VC7 PDB:1ZZN PDB:2A3J PDB:2NZ4
PDB:2OIH PDB:2OJ3 PDB:2U1A PDB:3BO2 PDB:3BO3 PDB:3BO4 PDB:3CUL
PDB:3CUN PDB:3EGZ PDB:3G8S PDB:3G8T PDB:3G96 PDB:3G9C PDB:3HHN
PDB:3IIN PDB:3IRW PDB:3IWN PDB:3K0J PDB:3L3C PDB:3MUM PDB:3MUR
PDB:3MUT PDB:3MUV PDB:3MXH PDB:3P49 PDB:3R1H PDB:3R1L PDB:3UCU
PDB:3UCZ PDB:3UD3 PDB:3UD4 PDB:3UTR PDBsum:1AUD PDBsum:1CX0
PDBsum:1DRZ PDBsum:1DZ5 PDBsum:1FHT PDBsum:1M5K PDBsum:1M5O
PDBsum:1M5P PDBsum:1M5V PDBsum:1NU4 PDBsum:1OIA PDBsum:1SJ3
PDBsum:1SJ4 PDBsum:1SJF PDBsum:1U6B PDBsum:1URN PDBsum:1VBX
PDBsum:1VBY PDBsum:1VBZ PDBsum:1VC0 PDBsum:1VC5 PDBsum:1VC6
PDBsum:1VC7 PDBsum:1ZZN PDBsum:2A3J PDBsum:2NZ4 PDBsum:2OIH
PDBsum:2OJ3 PDBsum:2U1A PDBsum:3BO2 PDBsum:3BO3 PDBsum:3BO4
PDBsum:3CUL PDBsum:3CUN PDBsum:3EGZ PDBsum:3G8S PDBsum:3G8T
PDBsum:3G96 PDBsum:3G9C PDBsum:3HHN PDBsum:3IIN PDBsum:3IRW
PDBsum:3IWN PDBsum:3K0J PDBsum:3L3C PDBsum:3MUM PDBsum:3MUR
PDBsum:3MUT PDBsum:3MUV PDBsum:3MXH PDBsum:3P49 PDBsum:3R1H
PDBsum:3R1L PDBsum:3UCU PDBsum:3UCZ PDBsum:3UD3 PDBsum:3UD4
PDBsum:3UTR ProteinModelPortal:P09012 SMR:P09012 DIP:DIP-29407N
IntAct:P09012 MINT:MINT-125665 STRING:P09012 PhosphoSite:P09012
DMDM:134092 PaxDb:P09012 PeptideAtlas:P09012 PRIDE:P09012
Ensembl:ENST00000243563 GeneID:6626 KEGG:hsa:6626 UCSC:uc002ooz.3
GeneCards:GC19P041256 HGNC:HGNC:11151 HPA:CAB004652 MIM:182285
neXtProt:NX_P09012 PharmGKB:PA35993 InParanoid:P09012
PhylomeDB:P09012 ChiTaRS:SNRPA EvolutionaryTrace:P09012
GenomeRNAi:6626 NextBio:25809 ArrayExpress:P09012 Bgee:P09012
CleanEx:HS_SNRPA Genevestigator:P09012 GermOnline:ENSG00000077312
Uniprot:P09012
Length = 282
Score = 127 (49.8 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 49/167 (29%), Positives = 71/167 (42%)
Query: 7 GLVDTAGVGVHPEPGMVGITAVASVKGY--SSP--LPDPNLIGQRRDIAPG-INPTIPDV 61
G G P PGM +T + + P +P P +I +APG I P
Sbjct: 129 GATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPP-GLAPGQIPPGAMPP 187
Query: 62 INGVPSSLRNNAGSPLKKGESN-LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPR 120
+P + PL + N +LF+ LP + +S LF F G++E+R++ P
Sbjct: 188 QQLMPGQMP--PAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV---PG 242
Query: 121 RTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
R + FVEFD+ A A DAL G+K +KI FA
Sbjct: 243 RHD-----IAFVEFDNEVQAGAARDALQGFKITQNN----AMKISFA 280
>UNIPROTKB|Q06AA4 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9823 "Sus scrofa" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:DQ972960
RefSeq:NP_001070690.1 UniGene:Ssc.7670 ProteinModelPortal:Q06AA4
SMR:Q06AA4 STRING:Q06AA4 Ensembl:ENSSSCT00000003330 GeneID:768109
KEGG:ssc:768109 ArrayExpress:Q06AA4 Uniprot:Q06AA4
Length = 282
Score = 124 (48.7 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 47/156 (30%), Positives = 69/156 (44%)
Query: 18 PEPGMVGITAVASVKGY--SSP--LPDPNLIGQRRDIAPG-INPTIPDVINGVPSSLRNN 72
P PGM +T + + P +P P +I +APG I P +P +
Sbjct: 140 PVPGMPPMTQTPRIMHHMPGQPPYMPPPGMIPPP-GLAPGQIPPGAMPPQQLMPGQMP-- 196
Query: 73 AGSPLKKGESN-LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCF 131
PL + N +LF+ LP + +S LF F G++E+R++ P R + F
Sbjct: 197 PAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV---PGRHD-----IAF 248
Query: 132 VEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
VEFD+ A A DAL G+K +KI FA
Sbjct: 249 VEFDNEVQAGAARDALQGFKITQNN----AMKISFA 280
>MGI|MGI:1855690 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1855690
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11091 HOVERGEN:HBG000895 CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W
EMBL:L15447 EMBL:BC003229 EMBL:BC094006 EMBL:BC096648
IPI:IPI00122350 PIR:S42113 RefSeq:NP_001040102.1 RefSeq:NP_056597.3
UniGene:Mm.386890 ProteinModelPortal:Q62189 SMR:Q62189
STRING:Q62189 PhosphoSite:Q62189 PaxDb:Q62189 PRIDE:Q62189
Ensembl:ENSMUST00000080356 Ensembl:ENSMUST00000122202
Ensembl:ENSMUST00000163311 GeneID:53607 KEGG:mmu:53607
InParanoid:Q62189 NextBio:310305 Bgee:Q62189 CleanEx:MM_SNRPA
Genevestigator:Q62189 GermOnline:ENSMUSG00000061479 Uniprot:Q62189
Length = 287
Score = 123 (48.4 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 49/161 (30%), Positives = 71/161 (44%)
Query: 14 VG-VHPEPGMVGITAVASVKGY--SSP--LPDPNLIGQRRDIAPG-INPTIPDVINGVPS 67
VG V P PGM + + + P +P P +I +APG I P +P
Sbjct: 140 VGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPP-GLAPGQIPPGAMPPQQLMPG 198
Query: 68 SLRNNAGSPLKKGESN-LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRA 126
+ PL + N +LF+ LP + +S LF F G++E+R++ P R
Sbjct: 199 QMP--PAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV---PGRHD--- 250
Query: 127 MVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
+ FVEFD+ A A DAL G+K +KI FA
Sbjct: 251 --IAFVEFDNEVQAGAARDALQGFKITQNN----AMKISFA 285
>UNIPROTKB|Q2KIR1 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9913 "Bos taurus" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 KO:K11091
HOVERGEN:HBG000895 EMBL:BC112544 IPI:IPI00704416
RefSeq:NP_001039504.1 UniGene:Bt.92011 ProteinModelPortal:Q2KIR1
SMR:Q2KIR1 STRING:Q2KIR1 PRIDE:Q2KIR1 Ensembl:ENSBTAT00000011963
GeneID:509802 KEGG:bta:509802 CTD:6626 InParanoid:Q2KIR1
OMA:MSQAPRM OrthoDB:EOG498V1W NextBio:20869138 Uniprot:Q2KIR1
Length = 282
Score = 122 (48.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 46/156 (29%), Positives = 69/156 (44%)
Query: 18 PEPGMVGITAVASVKGY--SSP--LPDPNLIGQRRDIAPG-INPTIPDVINGVPSSLRNN 72
P PGM +T + + P +P P +I +APG + P +P +
Sbjct: 140 PVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPP-GLAPGQLPPGAMPPQQLMPGQMP-- 196
Query: 73 AGSPLKKGESN-LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCF 131
PL + N +LF+ LP + +S LF F G++E+R++ P R + F
Sbjct: 197 PAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV---PGRHD-----IAF 248
Query: 132 VEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
VEFD+ A A DAL G+K +KI FA
Sbjct: 249 VEFDNEVQAGAARDALQGFKITQNN----AMKISFA 280
>UNIPROTKB|B8AM21 [details] [associations]
symbol:OsI_11177 "U2 small nuclear ribonucleoprotein B''"
species:39946 "Oryza sativa Indica Group" [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0015030
"Cajal body" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030
GO:GO:0000398 GO:GO:0017069 GO:GO:0005686 EMBL:CM000128
eggNOG:NOG317159 PANTHER:PTHR10501 HOGENOM:HOG000217519
ProteinModelPortal:B8AM21 STRING:B8AM21 Gramene:B8AM21
Uniprot:B8AM21
Length = 232
Score = 117 (46.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCAR 141
+N+LF+ LP + T + LF+ + G+RE+R+I +P G + FVE++D +
Sbjct: 157 NNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKP---G-----IAFVEYEDDSQSM 208
Query: 142 TAMDALHGYKFDDKKP 157
AM AL G+K P
Sbjct: 209 VAMQALQGFKITPYNP 224
>UNIPROTKB|Q10MR0 [details] [associations]
symbol:LOC_Os03g18720 "U2 small nuclear ribonucleoprotein
B''" species:39947 "Oryza sativa Japonica Group" [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0015030 "Cajal body" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
EMBL:DP000009 EMBL:AP008209 GO:GO:0015030 GO:GO:0000398
EMBL:CM000140 GO:GO:0017069 GO:GO:0005686 eggNOG:NOG317159
PANTHER:PTHR10501 HOGENOM:HOG000217519 ProtClustDB:CLSN2683617
KO:K11094 OMA:DIACATQ EMBL:AK103337 RefSeq:NP_001049846.1
UniGene:Os.75636 ProteinModelPortal:Q10MR0 STRING:Q10MR0
PRIDE:Q10MR0 EnsemblPlants:LOC_Os03g18720.1 GeneID:4332557
KEGG:dosa:Os03t0298800-01 KEGG:osa:4332557 Gramene:Q10MR0
Uniprot:Q10MR0
Length = 232
Score = 117 (46.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCAR 141
+N+LF+ LP + T + LF+ + G+RE+R+I +P G + FVE++D +
Sbjct: 157 NNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKP---G-----IAFVEYEDDSQSM 208
Query: 142 TAMDALHGYKFDDKKP 157
AM AL G+K P
Sbjct: 209 VAMQALQGFKITPYNP 224
>DICTYBASE|DDB_G0268988 [details] [associations]
symbol:DDB_G0268988 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0268988 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000004 eggNOG:NOG255497 RefSeq:XP_646953.2
ProteinModelPortal:Q55ER7 EnsemblProtists:DDB0233676 GeneID:8616643
KEGG:ddi:DDB_G0268988 OMA:EFATMAM Uniprot:Q55ER7
Length = 356
Score = 120 (47.3 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 34/101 (33%), Positives = 53/101 (52%)
Query: 66 PSSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDR 125
P S + G P + LFV LP D T RE+S LFR G+ IR+I+KE +
Sbjct: 260 PQSSISTTGMPC-----STLFVSNLPKDVTERELSILFRFMRGFVGIRLINKEGK----- 309
Query: 126 AMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQF 166
+ +CF +F D + + A++ L G++ D S ++ I+F
Sbjct: 310 -LPMCFCDFIDTQSSMFALEFLQGFRMDASDISS-SISIEF 348
>TAIR|locus:2060015 [details] [associations]
symbol:AT2G42240 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000242657 UniGene:At.73056 EMBL:AK228665
IPI:IPI00570582 RefSeq:NP_001078040.1 ProteinModelPortal:Q0WQM7
SMR:Q0WQM7 EnsemblPlants:AT2G42240.2 GeneID:818824
KEGG:ath:AT2G42240 TAIR:At2g42240 OMA:CPTLFVA PhylomeDB:Q0WQM7
ProtClustDB:CLSN2699079 Genevestigator:Q0WQM7 Uniprot:Q0WQM7
Length = 302
Score = 118 (46.6 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 42/116 (36%), Positives = 52/116 (44%)
Query: 52 PGINPTIPDVINGVPSSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE 111
PG++P IP I S S + E LFV GLP D RE+ +LFR F GY
Sbjct: 22 PGVSP-IP--ITSAHSVYLPTHVSIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYET 78
Query: 112 IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
+ R+ D A F F D + A M AL+G FD +K TL I A
Sbjct: 79 SHL------RSSDGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKHS--TLHIDLA 126
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 110 (43.8 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 34/117 (29%), Positives = 61/117 (52%)
Query: 56 PTIPDVINGVPSSLRNNAGSPLKKG-----ESNLLFVDGLPTDCTRREVSHLFRPFVGYR 110
PT + NG P+++ NN SP+ G ++NL+ V+ LP + T+ E+ LF
Sbjct: 9 PTCNNTANG-PTTINNNCSSPVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIE 66
Query: 111 EIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
+++ + TG +++ FV + DPK A A++ L+G + K T+K+ +A
Sbjct: 67 SCKLVRD--KITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----TIKVSYA 115
>FB|FBgn0263995 [details] [associations]
symbol:cpo "couch potato" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS;IDA] [GO:0007422 "peripheral nervous system
development" evidence=NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0009987 "cellular process" evidence=IMP] [GO:0007268 "synaptic
transmission" evidence=IMP] [GO:0042048 "olfactory behavior"
evidence=IMP] [GO:0022611 "dormancy process" evidence=IMP]
[GO:0035206 "regulation of hemocyte proliferation" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007275 GO:GO:0005634
GO:GO:0000166 GO:GO:0007268 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0042048 GO:GO:0035206 CTD:130749 EMBL:Z14311 EMBL:Z14312
EMBL:Z14974 EMBL:AY129455 EMBL:BT001569 PIR:A46230 PIR:S24761
RefSeq:NP_001014631.2 RefSeq:NP_001014632.2 RefSeq:NP_001163640.1
RefSeq:NP_001163641.1 RefSeq:NP_524844.5 RefSeq:NP_732282.5
RefSeq:NP_732283.4 RefSeq:NP_732284.4 UniGene:Dm.6154
ProteinModelPortal:Q01617 SMR:Q01617 IntAct:Q01617 MINT:MINT-335471
STRING:Q01617 PaxDb:Q01617 GeneID:45840 GeneID:8674070
KEGG:dme:Dmel_CG31243 KEGG:dme:Dmel_CG42457 FlyBase:FBgn0000363
eggNOG:NOG255204 InParanoid:Q01617 OrthoDB:EOG4H44N8 ChiTaRS:CPO
NextBio:838394 Bgee:Q01617 GermOnline:CG31243 GO:GO:0022611
Uniprot:Q01617
Length = 738
Score = 117 (46.2 bits), Expect = 0.00013, P = 0.00013
Identities = 36/105 (34%), Positives = 53/105 (50%)
Query: 64 GVPSSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTG 123
G+ S+ ++ + + E LFV GLP D RE+ LFR + GY E ++ K + G
Sbjct: 433 GLSQSM-DSVNTASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGY-EGSLL-KVTSKNG 489
Query: 124 DRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP-TLKIQFA 167
A + FV F A A L G +FD PD P T++++FA
Sbjct: 490 KTASPVGFVTFHTRAGAEAAKQDLQGVRFD---PDMPQTIRLEFA 531
>TAIR|locus:2007417 [details] [associations]
symbol:AT1G06960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005686 "U2 snRNP"
evidence=IDA] [GO:0015030 "Cajal body" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 GO:GO:0000398
GO:GO:0017069 GO:GO:0005686 EMBL:AC067971 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:AY080742 EMBL:AY142487 IPI:IPI00542329
IPI:IPI00548592 IPI:IPI00846257 PIR:C86204 RefSeq:NP_001077472.1
RefSeq:NP_172177.3 RefSeq:NP_850936.1 UniGene:At.42321
ProteinModelPortal:Q8H1S6 SMR:Q8H1S6 STRING:Q8H1S6
EnsemblPlants:AT1G06960.1 GeneID:837206 KEGG:ath:AT1G06960
GeneFarm:4538 TAIR:At1g06960 InParanoid:Q8H1S6 OMA:DIACATQ
PhylomeDB:Q8H1S6 Genevestigator:Q8H1S6 Uniprot:Q8H1S6
Length = 229
Score = 110 (43.8 bits), Expect = 0.00013, P = 0.00013
Identities = 31/105 (29%), Positives = 52/105 (49%)
Query: 56 PTIPD---VINGVPSSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREI 112
P++P+ NG+P +G +N+LF+ LP + + LF + G++EI
Sbjct: 126 PSMPNGATTQNGMPVPPFQPSGQDTMP-PNNILFIHNLPIETNSMMLQLLFEQYPGFKEI 184
Query: 113 RVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157
R+I +P G + FVE++D + AM AL G+K + P
Sbjct: 185 RMIEAKP---G-----IAFVEYEDDVQSSMAMQALQGFKITPQNP 221
>ZFIN|ZDB-GENE-030131-2841 [details] [associations]
symbol:snrpa "small nuclear ribonucleoprotein
polypeptide A" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-2841 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0000398 GO:GO:0017069
EMBL:CU138549 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HSSP:P09012 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM EMBL:CABZ01062168 EMBL:BC064308
IPI:IPI00504389 RefSeq:NP_955965.1 UniGene:Dr.76157 SMR:Q6P2T1
STRING:Q6P2T1 Ensembl:ENSDART00000012018 GeneID:324121
KEGG:dre:324121 InParanoid:Q6P2T1 NextBio:20808604 Uniprot:Q6P2T1
Length = 281
Score = 111 (44.1 bits), Expect = 0.00016, P = 0.00016
Identities = 40/132 (30%), Positives = 62/132 (46%)
Query: 38 LPDPNLI-GQRRDIAPGINPTIPDVINGVPSSLRNNAGSPLKKGESN-LLFVDGLPTDCT 95
+P PN+ GQ + PG P P + +P + + + N +LF+ LP +
Sbjct: 167 MPPPNMAPGQ---MPPGAMP--PGGM--MPGQMPGQMPQQVSENPPNHILFLTNLPEETN 219
Query: 96 RREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155
+S LF F G++E+R++ P R + FVEFD+ A A +AL G+K
Sbjct: 220 ELMLSMLFNQFPGFKEVRLV---PGRHD-----IAFVEFDNEVQAGAAREALQGFKITQ- 270
Query: 156 KPDSPTLKIQFA 167
S +KI FA
Sbjct: 271 ---SNAMKISFA 279
>SGD|S000005141 [details] [associations]
symbol:WHI3 "RNA binding protein that sequesters CLN3 mRNA in
cytoplasmic foci" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;ISS;IMP;IDA] [GO:0008361
"regulation of cell size" evidence=IGI;IMP] [GO:0007124
"pseudohyphal growth" evidence=IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0001403 "invasive growth in response to glucose
limitation" evidence=IMP] [GO:0051220 "cytoplasmic sequestering of
protein" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005141
GO:GO:0005737 GO:GO:0051220 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BK006947 GO:GO:0008361 GO:GO:0003723 GO:GO:0007049
GO:GO:0001403 GO:GO:0007124 EMBL:X78898 OrthoDB:EOG42592X
eggNOG:NOG255497 EMBL:U01095 EMBL:Z71473 PIR:S50734
RefSeq:NP_014202.1 ProteinModelPortal:P34761 SMR:P34761
IntAct:P34761 MINT:MINT-4500279 STRING:P34761 PaxDb:P34761
PeptideAtlas:P34761 EnsemblFungi:YNL197C GeneID:855524
KEGG:sce:YNL197C CYGD:YNL197c GeneTree:ENSGT00530000067542
HOGENOM:HOG000074699 OMA:QRSRFSF NextBio:979559
Genevestigator:P34761 GermOnline:YNL197C Uniprot:P34761
Length = 661
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCART 142
N L+V LP+D T +E+ LF G+R + +K G +CFVEFDD A
Sbjct: 538 NTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGPMCFVEFDDVSFATR 597
Query: 143 AMDALHGYKFDDKKPDSPT-LKIQFAHFP 170
A+ L+G + S +++ F+ P
Sbjct: 598 ALAELYGRQLPRSTVSSKGGIRLSFSKNP 626
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 110 (43.8 bits), Expect = 0.00035, P = 0.00035
Identities = 34/117 (29%), Positives = 61/117 (52%)
Query: 56 PTIPDVINGVPSSLRNNAGSPLKKG-----ESNLLFVDGLPTDCTRREVSHLFRPFVGYR 110
PT + NG P+++ NN SP+ G ++NL+ V+ LP + T+ E+ LF
Sbjct: 9 PTCNNTANG-PTTINNNCSSPVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIE 66
Query: 111 EIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
+++ + TG +++ FV + DPK A A++ L+G + K T+K+ +A
Sbjct: 67 SCKLVRD--KITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----TIKVSYA 115
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 110 (43.8 bits), Expect = 0.00039, P = 0.00039
Identities = 34/117 (29%), Positives = 61/117 (52%)
Query: 56 PTIPDVINGVPSSLRNNAGSPLKKG-----ESNLLFVDGLPTDCTRREVSHLFRPFVGYR 110
PT + NG P+++ NN SP+ G ++NL+ V+ LP + T+ E+ LF
Sbjct: 37 PTCNNTANG-PTTINNNCSSPVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIE 94
Query: 111 EIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
+++ + TG +++ FV + DPK A A++ L+G + K T+K+ +A
Sbjct: 95 SCKLVRD--KITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----TIKVSYA 143
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 110 (43.8 bits), Expect = 0.00039, P = 0.00039
Identities = 34/117 (29%), Positives = 61/117 (52%)
Query: 56 PTIPDVINGVPSSLRNNAGSPLKKG-----ESNLLFVDGLPTDCTRREVSHLFRPFVGYR 110
PT + NG P+++ NN SP+ G ++NL+ V+ LP + T+ E+ LF
Sbjct: 38 PTCNNTANG-PTTINNNCSSPVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIE 95
Query: 111 EIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
+++ + TG +++ FV + DPK A A++ L+G + K T+K+ +A
Sbjct: 96 SCKLVRD--KITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----TIKVSYA 144
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 110 (43.8 bits), Expect = 0.00039, P = 0.00039
Identities = 34/117 (29%), Positives = 61/117 (52%)
Query: 56 PTIPDVINGVPSSLRNNAGSPLKKG-----ESNLLFVDGLPTDCTRREVSHLFRPFVGYR 110
PT + NG P+++ NN SP+ G ++NL+ V+ LP + T+ E+ LF
Sbjct: 38 PTCNNTANG-PTTINNNCSSPVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIE 95
Query: 111 EIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
+++ + TG +++ FV + DPK A A++ L+G + K T+K+ +A
Sbjct: 96 SCKLVRD--KITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----TIKVSYA 144
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 109 (43.4 bits), Expect = 0.00044, P = 0.00044
Identities = 34/117 (29%), Positives = 61/117 (52%)
Query: 56 PTIPDVINGVPSSLRNNAGSPLKKG-----ESNLLFVDGLPTDCTRREVSHLFRPFVGYR 110
PT + NG P+++ NN SP+ G ++NL+ V+ LP + T+ E+ LF
Sbjct: 9 PTCNNTANG-PTTVNNNCSSPVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIE 66
Query: 111 EIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
+++ + TG +++ FV + DPK A A++ L+G + K T+K+ +A
Sbjct: 67 SCKLVRD--KITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----TIKVSYA 115
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 109 (43.4 bits), Expect = 0.00048, P = 0.00048
Identities = 34/117 (29%), Positives = 61/117 (52%)
Query: 56 PTIPDVINGVPSSLRNNAGSPLKKG-----ESNLLFVDGLPTDCTRREVSHLFRPFVGYR 110
PT + NG P+++ NN SP+ G ++NL+ V+ LP + T+ E+ LF
Sbjct: 9 PTCNNTANG-PTTVNNNCSSPVDSGNTEDSKTNLI-VNYLPQNMTQEELKSLFGSIGEIE 66
Query: 111 EIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
+++ + TG +++ FV + DPK A A++ L+G + K T+K+ +A
Sbjct: 67 SCKLVRD--KITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----TIKVSYA 115
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 108 (43.1 bits), Expect = 0.00062, P = 0.00062
Identities = 33/116 (28%), Positives = 58/116 (50%)
Query: 56 PTIPDVINGVPSSLRNNAGSPLKKG---ESNLLFVDG-LPTDCTRREVSHLFRPFVGYRE 111
PT + NG P+++ NN SP+ G +S +D LP + T+ E+ LF
Sbjct: 9 PTCNNTANG-PTTVNNNCSSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIES 67
Query: 112 IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
+++ + TG +++ FV + DPK A A++ L+G + K T+K+ +A
Sbjct: 68 CKLVRD--KITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----TIKVSYA 115
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 108 (43.1 bits), Expect = 0.00062, P = 0.00062
Identities = 33/116 (28%), Positives = 58/116 (50%)
Query: 56 PTIPDVINGVPSSLRNNAGSPLKKG---ESNLLFVDG-LPTDCTRREVSHLFRPFVGYRE 111
PT + NG P+++ NN SP+ G +S +D LP + T+ E+ LF
Sbjct: 9 PTCNNTANG-PTTVNNNCSSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIES 67
Query: 112 IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
+++ + TG +++ FV + DPK A A++ L+G + K T+K+ +A
Sbjct: 68 CKLVRD--KITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----TIKVSYA 115
>FB|FBgn0003449 [details] [associations]
symbol:snf "sans fille" species:7227 "Drosophila
melanogaster" [GO:0048477 "oogenesis" evidence=IMP;TAS] [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=ISS;NAS;IDA]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0019099 "female
germ-line sex determination" evidence=NAS] [GO:0005692 "U11 snRNP"
evidence=ISS] [GO:0030619 "U1 snRNA binding" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;NAS;TAS] [GO:0007539 "primary sex determination, soma"
evidence=NAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0043234 "protein complex" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0035614 "snRNA stem-loop
binding" evidence=IDA] [GO:0030620 "U2 snRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
GO:GO:0000166 EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0005686 GO:GO:0019099 GO:GO:0000381 GO:GO:0007539
GO:GO:0005685 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
GO:GO:0030620 PANTHER:PTHR10501 GO:GO:0030619 OMA:MSQAPRM
EMBL:M89775 EMBL:L29521 EMBL:AY061491 PIR:A54279 RefSeq:NP_511045.1
UniGene:Dm.2625 PDB:2AYM PDB:2B0G PDB:2K3K PDBsum:2AYM PDBsum:2B0G
PDBsum:2K3K ProteinModelPortal:P43332 SMR:P43332 DIP:DIP-23676N
IntAct:P43332 MINT:MINT-1634151 STRING:P43332 PaxDb:P43332
PRIDE:P43332 EnsemblMetazoa:FBtr0070748 GeneID:31442
KEGG:dme:Dmel_CG4528 CTD:31442 FlyBase:FBgn0003449
InParanoid:P43332 OrthoDB:EOG4TMPJ8 PhylomeDB:P43332 ChiTaRS:snf
EvolutionaryTrace:P43332 GenomeRNAi:31442 NextBio:773664
Bgee:P43332 GermOnline:CG4528 GO:GO:0035614 Uniprot:P43332
Length = 216
Score = 104 (41.7 bits), Expect = 0.00068, P = 0.00068
Identities = 32/103 (31%), Positives = 51/103 (49%)
Query: 66 PSSLRN-NAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGD 124
PSS N N + ++ + +LF+ LP + +S LF F G++E+R++ P R
Sbjct: 124 PSSAENSNPNAQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLV---PNRHD- 179
Query: 125 RAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
+ FVEF + A +AL G+K P + +KI FA
Sbjct: 180 ----IAFVEFTTELQSNAAKEALQGFKIT---P-THAMKITFA 214
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.141 0.440 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 184 184 0.00078 110 3 11 22 0.45 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 51
No. of states in DFA: 559 (59 KB)
Total size of DFA: 150 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.27u 0.19s 18.46t Elapsed: 00:00:01
Total cpu time: 18.28u 0.19s 18.47t Elapsed: 00:00:01
Start: Fri May 10 05:15:56 2013 End: Fri May 10 05:15:57 2013