BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030012
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93062|RBPMS_HUMAN RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS
PE=1 SV=1
Length = 196
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 77 LKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYR--EIRVIHKEPRRTGDRAMVLCFVEF 134
L++ E LFV GLP D RE+ LFRPF GY I++ K+P + FV F
Sbjct: 18 LQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP---------VGFVSF 68
Query: 135 DDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
D A A +AL+G +FD + P TL+++FA
Sbjct: 69 DSRSEAEAAKNALNGIRFDPEIPQ--TLRLEFA 99
>sp|Q8VC52|RBPS2_MOUSE RNA-binding protein with multiple splicing 2 OS=Mus musculus
GN=Rbpms2 PE=1 SV=1
Length = 206
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 14/96 (14%)
Query: 74 GSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYR--EIRVIHKEPRRTGDRAMVLCF 131
GSPL++ E LFV GLP D RE+ LFRPF GY I++ ++P + F
Sbjct: 17 GSPLEE-EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQP---------VGF 66
Query: 132 VEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
V FD A A +AL+G +FD + P TL+++FA
Sbjct: 67 VIFDSRAGAEAAKNALNGIRFDPENPQ--TLRLEFA 100
>sp|Q9WVB0|RBPMS_MOUSE RNA-binding protein with multiple splicing OS=Mus musculus GN=Rbpms
PE=2 SV=2
Length = 197
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 77 LKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYR--EIRVIHKEPRRTGDRAMVLCFVEF 134
L++ E LFV GLP D RE+ LFRPF GY I++ K+P + FV F
Sbjct: 18 LQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQP---------VGFVSF 68
Query: 135 DDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
D A A +AL+G +FD + P TL+++FA
Sbjct: 69 DSRSEAEAAKNALNGIRFDPEIPQ--TLRLEFA 99
>sp|Q9W6I1|RBPMS_CHICK RNA-binding protein with multiple splicing OS=Gallus gallus
GN=RBPMS PE=2 SV=1
Length = 200
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 13/89 (14%)
Query: 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRTGDRAMVLCFVEFDDPK 138
E LFV GLP D RE+ LFRPF GY I++ K+P + FV FD
Sbjct: 20 EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQP---------VGFVTFDSRA 70
Query: 139 CARTAMDALHGYKFDDKKPDSPTLKIQFA 167
A A +AL+G +FD + P TL+++FA
Sbjct: 71 GAEAAKNALNGIRFDPENPQ--TLRLEFA 97
>sp|Q9YGP5|RBPMS_XENLA RNA-binding protein with multiple splicing OS=Xenopus laevis
GN=rbpms PE=2 SV=1
Length = 196
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 13/85 (15%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRTGDRAMVLCFVEFDDPKCART 142
LFV GLP D RE+ LFRPF GY I++ K+P + FV FD+ A
Sbjct: 22 LFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQP---------VGFVTFDNRAGAEA 72
Query: 143 AMDALHGYKFDDKKPDSPTLKIQFA 167
A +AL+G +FD + P TL+++FA
Sbjct: 73 AKNALNGIRFDPENPQ--TLRLEFA 95
>sp|Q6ZRY4|RBPS2_HUMAN RNA-binding protein with multiple splicing 2 OS=Homo sapiens
GN=RBPMS2 PE=2 SV=1
Length = 209
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 13/89 (14%)
Query: 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYR--EIRVIHKEPRRTGDRAMVLCFVEFDDPK 138
E LFV GLP D RE+ LFRPF GY I++ ++P + FV FD
Sbjct: 29 EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTARQP---------VGFVIFDSRA 79
Query: 139 CARTAMDALHGYKFDDKKPDSPTLKIQFA 167
A A +AL+G +FD + P TL+++FA
Sbjct: 80 GAEAAKNALNGIRFDPENPQ--TLRLEFA 106
>sp|B8AM21|RU2B_ORYSI U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
indica GN=OsI_11177 PE=3 SV=1
Length = 232
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCAR 141
+N+LF+ LP + T + LF+ + G+RE+R+I +P + FVE++D +
Sbjct: 157 NNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPG--------IAFVEYEDDSQSM 208
Query: 142 TAMDALHGYKFDDKKP 157
AM AL G+K P
Sbjct: 209 VAMQALQGFKITPYNP 224
>sp|Q10MR0|RU2B_ORYSJ U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
japonica GN=Os03g0298800 PE=2 SV=1
Length = 232
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCAR 141
+N+LF+ LP + T + LF+ + G+RE+R+I +P + FVE++D +
Sbjct: 157 NNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPG--------IAFVEYEDDSQSM 208
Query: 142 TAMDALHGYKFDDKKP 157
AM AL G+K P
Sbjct: 209 VAMQALQGFKITPYNP 224
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 45 GQRRDIAPGINPTIPDVINGVPSSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFR 104
QR + A G + P NGVP+ +G +N+LF+ LP + T + LF
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQPSGQETMPP-NNILFIQNLPHETTSMMLQLLFE 179
Query: 105 PFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157
+ G++EIR+I +P + FVE++D A AM L G+K + P
Sbjct: 180 QYPGFKEIRMIDAKPG--------IAFVEYEDDVQASIAMQPLQGFKITPQNP 224
>sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana
GN=At1g06960 PE=1 SV=1
Length = 229
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCAR 141
+N+LF+ LP + + LF + G++EIR+I +P + FVE++D +
Sbjct: 154 NNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPG--------IAFVEYEDDVQSS 205
Query: 142 TAMDALHGYKFDDKKP 157
AM AL G+K + P
Sbjct: 206 MAMQALQGFKITPQNP 221
>sp|Q6FXP4|MRD1_CANGA Multiple RNA-binding domain-containing protein 1 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=MRD1 PE=3 SV=1
Length = 861
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 67 SSLRNNAGSPLKKGESN-LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDR 125
S + NAGS KK N + V LP + TR++V LF F + +RV P++
Sbjct: 721 SHRQGNAGSQEKKKAKNGKIIVKNLPFEATRKDVFELFNSFGQLKSVRV----PKKFDKS 776
Query: 126 AMVLCFVEFDDPKCARTAMDALHG 149
A FVEF PK A AMD L G
Sbjct: 777 ARGFAFVEFVLPKEAENAMDQLQG 800
>sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A
PE=1 SV=1
Length = 250
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCAR 141
+N+LFV LP + T + LF + G++E+R+I +P + FVEF D +
Sbjct: 176 NNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPG--------IAFVEFADEMQST 227
Query: 142 TAMDALHGYKFDDKK 156
AM L G+K +
Sbjct: 228 VAMQGLQGFKIQQNQ 242
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 74 GSPLKKGESN-LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFV 132
PL + N +LF+ LP + +S LF F G++E+R++ P R + FV
Sbjct: 203 AQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV---PGRHD-----IAFV 254
Query: 133 EFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
EFD+ A A DAL G+K +KI FA
Sbjct: 255 EFDNEVQAGAARDALQGFKITQNN----AMKISFA 285
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCAR 141
+++LF+ LP + +S LF F G++E+R++ P R + FVEFD+ A
Sbjct: 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV---PGRHD-----IAFVEFDNEVQAG 258
Query: 142 TAMDALHGYKFDDKKPDSPTLKIQFA 167
A DAL G+K +KI FA
Sbjct: 259 AARDALQGFKITQNN----AMKISFA 280
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCAR 141
+++LF+ LP + +S LF F G++E+R++ P R + FVEFD+ A
Sbjct: 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV---PGRHD-----IAFVEFDNEVQAG 258
Query: 142 TAMDALHGYKFDDKKPDSPTLKIQFA 167
A DAL G+K +KI FA
Sbjct: 259 AARDALQGFKITQNN----AMKISFA 280
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCAR 141
+++LF+ LP + +S LF F G++E+R++ P R + FVEFD+ A
Sbjct: 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV---PGRHD-----IAFVEFDNEVQAG 258
Query: 142 TAMDALHGYKFDDKKPDSPTLKIQFA 167
A DAL G+K +KI FA
Sbjct: 259 AARDALQGFKITQNN----AMKISFA 280
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCAR 141
+++LF+ LP + +S LF F G++E+R++ P R + FVEFD+ A
Sbjct: 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV---PGRHD-----IAFVEFDNEVQAG 258
Query: 142 TAMDALHGYKFDDKKPDSPTLKIQFA 167
A ++L G+K S ++KI FA
Sbjct: 259 AARESLQGFKIT----QSNSMKISFA 280
>sp|Q06106|MRD1_YEAST Multiple RNA-binding domain-containing protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRD1 PE=1
SV=1
Length = 887
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCA 140
+S + V LP + TR++V LF F + +RV P++ A FVEF PK A
Sbjct: 761 KSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRV----PKKFDKSARGFAFVEFLLPKEA 816
Query: 141 RTAMDALHG 149
AMD LHG
Sbjct: 817 ENAMDQLHG 825
>sp|P34761|WHI3_YEAST Protein WHI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI3 PE=1 SV=1
Length = 661
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%)
Query: 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCART 142
N L+V LP+D T +E+ LF G+R + +K G +CFVEFDD A
Sbjct: 538 NTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGPMCFVEFDDVSFATR 597
Query: 143 AMDALHG 149
A+ L+G
Sbjct: 598 ALAELYG 604
>sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp.
japonica GN=Os05g0154800 PE=3 SV=1
Length = 253
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCAR 141
+N+LFV LP + T + LF + G++E+R++ +P + FVE+ D A
Sbjct: 178 NNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPG--------IAFVEYGDEGQAT 229
Query: 142 TAMDALHGYK 151
AM+ L G+K
Sbjct: 230 AAMNHLQGFK 239
>sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica
GN=OsI_18512 PE=3 SV=1
Length = 253
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCAR 141
+N+LFV LP + T + LF + G++E+R++ +P + FVE+ D A
Sbjct: 178 NNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPG--------IAFVEYGDEGQAT 229
Query: 142 TAMDALHGYK 151
AM+ L G+K
Sbjct: 230 AAMNHLQGFK 239
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 56 PTIPDVINGVPSSLRNNAGSPLKKGES----NLLFVDGLPTDCTRREVSHLFRPFVGYRE 111
PT + NG P+++ NN SP+ G + L V+ LP + T+ E+ LF
Sbjct: 9 PTCNNTANG-PTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIES 67
Query: 112 IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAH 168
+++ + TG +++ FV + DPK A A++ L+G + K T+K+ +A
Sbjct: 68 CKLVRD--KITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----TIKVSYAR 116
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 56 PTIPDVINGVPSSLRNNAGSPLKKGES----NLLFVDGLPTDCTRREVSHLFRPFVGYRE 111
PT + NG P+++ NN SP+ G + L V+ LP + T+ E+ LF
Sbjct: 9 PTCNNTANG-PTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIES 67
Query: 112 IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAH 168
+++ + TG +++ FV + DPK A A++ L+G + K T+K+ +A
Sbjct: 68 CKLVRD--KITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----TIKVSYAR 116
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 56 PTIPDVINGVPSSLRNNAGSPLKKGES----NLLFVDGLPTDCTRREVSHLFRPFVGYRE 111
PT + NG P+++ NN SP+ G + L V+ LP + T+ E+ LF
Sbjct: 9 PTCNNTANG-PTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIES 67
Query: 112 IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAH 168
+++ + TG +++ FV + DPK A A++ L+G + K T+K+ +A
Sbjct: 68 CKLVRD--KITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----TIKVSYAR 116
>sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster
GN=snf PE=1 SV=1
Length = 216
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 17/105 (16%)
Query: 66 PSSLRN-NAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGD 124
PSS N N + ++ + +LF+ LP + +S LF F G++E+R++ P R
Sbjct: 124 PSSAENSNPNAQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLV---PNRHD- 179
Query: 125 RAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT--LKIQFA 167
+ FVEF + A +AL G+K +PT +KI FA
Sbjct: 180 ----IAFVEFTTELQSNAAKEALQGFKI------TPTHAMKITFA 214
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2
PE=2 SV=1
Length = 225
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 84 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTA 143
+LF++ LP + +S LF F G++E+R++ P R + FVEF++ A A
Sbjct: 152 ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV---PGRHD-----IAFVEFENDGQAGAA 203
Query: 144 MDALHGYKFDDKKPDSPTLKIQFA 167
DAL G+K S +KI +A
Sbjct: 204 RDALQGFKIT----PSHAMKITYA 223
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2
PE=1 SV=1
Length = 225
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 84 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTA 143
+LF++ LP + +S LF F G++E+R++ P R + FVEF++ A A
Sbjct: 152 ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV---PGRHD-----IAFVEFENDGQAGAA 203
Query: 144 MDALHGYKFDDKKPDSPTLKIQFA 167
DAL G+K S +KI +A
Sbjct: 204 RDALQGFKIT----PSHAMKITYA 223
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 56 PTIPDVINGVPSSLRNNAGSP-LKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRV 114
P + +N V ++ G+ ++ ++ ++V L + E +F+P GY +
Sbjct: 591 PELAQKVNAVEATTSEKVGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVI 650
Query: 115 IHK-EPRRTGDR-AMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAH 168
K +P+R G +M FVEF D A AM A++G+ D K L+I+ +H
Sbjct: 651 RAKPDPKRPGKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHK-----LEIKLSH 701
>sp|Q01617|CPO_DROME Protein couch potato OS=Drosophila melanogaster GN=cpo PE=2 SV=3
Length = 738
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCA 140
E LFV GLP D RE+ LFR + GY + K + G A + FV F A
Sbjct: 449 EVRTLFVSGLPMDAKPRELYLLFRAYEGYEG--SLLKVTSKNGKTASPVGFVTFHTRAGA 506
Query: 141 RTAMDALHGYKFDDKKPDSP-TLKIQFA 167
A L G +FD PD P T++++FA
Sbjct: 507 EAAKQDLQGVRFD---PDMPQTIRLEFA 531
>sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1
Length = 359
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 56 PTIPDVINGVPSSLRNNAGSPLKKG---ESNLLFVDG-LPTDCTRREVSHLFRPFVGYRE 111
PT + NG P+++ NN SP+ G +S +D LP + T+ E+ LF
Sbjct: 9 PTCNNTANG-PTTVNNNCSSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIES 67
Query: 112 IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAH 168
+++ + TG +++ FV + DPK A A++ L+G + K T+K+ +A
Sbjct: 68 CKLVRD--KITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----TIKVSYAR 116
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAM 144
+ V LP + TR++V LF F + +RV P++ A FVEF PK A AM
Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRV----PKKFDKSARGFAFVEFLLPKEAENAM 809
Query: 145 DALHG 149
D L G
Sbjct: 810 DQLQG 814
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 77 LKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHK-EPRRTGDR-AMVLCFVEF 134
++ G + +F+ L T ++++ F+PF G+ +V K +P++ G +M F EF
Sbjct: 645 VQAGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEF 704
Query: 135 DDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAH 168
+ A + A+ G D K L+++ +H
Sbjct: 705 KTKEQANAVISAMEGTILDGHK-----LQLKLSH 733
>sp|Q9IBD1|CELF3_DANRE CUGBP Elav-like family member 3 OS=Danio rerio GN=celf3 PE=2 SV=2
Length = 452
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAM 144
+F+ LP + T E+ +F PF +V R +++ FV FD+P A+ A+
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVD---RATNQSKCFGFVSFDNPASAQAAI 425
Query: 145 DALHGYKFDDKKPDSPTLKIQF 166
A++G++ K+ LK+Q
Sbjct: 426 QAMNGFQIGMKR-----LKVQL 442
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum
GN=snrpb2 PE=3 SV=1
Length = 241
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAM 144
LFV+ LP C +S LF F G++E+ ++ + G + F+EF+D + AM
Sbjct: 169 LFVENLPDKCDSMMLSMLFSQFQGFKEVHMVE---SKKG-----IAFIEFEDEIKSGFAM 220
Query: 145 DALHGYKFDDKKP 157
L +K +KP
Sbjct: 221 TNLQHFKVTPEKP 233
>sp|Q91579|CEL3A_XENLA CUGBP Elav-like family member 3-A OS=Xenopus laevis GN=tnrc4-a PE=2
SV=2
Length = 462
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAM 144
+F+ LP + T E+ +F PF +V R +++ FV FD+P A+ A+
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVD---RATNQSKCFGFVSFDNPGSAQAAI 435
Query: 145 DALHGYKFDDKKPDSPTLKIQF 166
A++G++ K+ LK+Q
Sbjct: 436 QAMNGFQIGMKR-----LKVQL 452
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLC-FVEFDDP 137
+GE LFV L T +V +F PF E V+ R D C FV+F
Sbjct: 91 RGEDRKLFVGMLGKQQTDEDVRRMFEPFGNIDECTVL-----RGPDGTSKGCAFVKFQTH 145
Query: 138 KCARTAMDALHG 149
A+ A++ALHG
Sbjct: 146 TEAQAAINALHG 157
>sp|Q01560|NOP3_YEAST Nucleolar protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NPL3 PE=1 SV=1
Length = 414
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAM 144
LFV P D E++ +F PF +E+++++ FVEF++ + A A+
Sbjct: 127 LFVRPFPLDVQESELNEIFGPFGPMKEVKILNG-----------FAFVEFEEAESAAKAI 175
Query: 145 DALHGYKFDDK 155
+ +HG F ++
Sbjct: 176 EEVHGKSFANQ 186
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MRD1 PE=3 SV=2
Length = 838
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 87 VDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDA 146
V LP + TR++V LF F + +RV P++ A FVEF P A AMD
Sbjct: 716 VKNLPFEATRKDVFELFSSFGQLKSVRV----PKKFDKSARGFAFVEFLLPSEAENAMDQ 771
Query: 147 LHG 149
L G
Sbjct: 772 LQG 774
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDR--AMVLCFVEFDDP 137
G + +FV L T +++ F+PF G+ +V K + D+ +M F+EF
Sbjct: 609 GPTVSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTK 668
Query: 138 KCARTAMDALHGYKFDDKKPDSPTLKIQFAHFPFHLP 174
+ A + A+ G D K ++++ +H LP
Sbjct: 669 EQAGAVIAAMDGAVIDGHK-----IQLKISHKQSSLP 700
>sp|Q7ZWM3|CEL3B_XENLA CUGBP Elav-like family member 3-B OS=Xenopus laevis GN=tnrc4-b PE=2
SV=1
Length = 462
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAM 144
+F+ LP + T E+ +F PF +V R +++ FV FD+P A+ A+
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVD---RATNQSKCFGFVSFDNPGSAQAAI 435
Query: 145 DALHGYKFDDKKPDSPTLKIQF 166
+++G++ K+ LK+Q
Sbjct: 436 QSMNGFQIGMKR-----LKVQL 452
>sp|Q9UT83|MUG28_SCHPO Meiotically up-regulated gene 28 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug28 PE=1 SV=1
Length = 609
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRA--MVLCFVEFDDPKCART 142
++V LP+ C ++ LF PF + + ++ ++ ++ D + F+ F++ A
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 143 AMDALHGYKFDDKKPDSPTLKIQFAH 168
A+ +L+G F TLK+++ H
Sbjct: 82 AIASLNGSSFQGN-----TLKVEYTH 102
>sp|Q9W4D2|RNP4F_DROME RNA-binding protein 4F OS=Drosophila melanogaster GN=Rnp4F PE=1
SV=1
Length = 941
Score = 40.0 bits (92), Expect = 0.010, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 66 PSSLRNNAGSPLKKG--------ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHK 117
PS ++ A + K+ E N +FV L C++ E+ LF PF +++R++HK
Sbjct: 699 PSKVKGPANAEAKESNFKYSPNMEINKIFVRNLHPACSKEELHELFSPFGTIKDVRLVHK 758
Query: 118 EPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKF 152
++ + +VEF+ P A+ A+ G F
Sbjct: 759 LNKQFKG----IAYVEFEKPGEAQRAVAGRDGCLF 789
>sp|P78795|EIF3G_SCHPO Eukaryotic translation initiation factor 3 subunit G
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tif35 PE=1 SV=2
Length = 282
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDP 137
++ +S L V L D E+ LFR F G + RV + + TG RA FV + D
Sbjct: 197 ERDDSATLRVTNLSDDTREEELRDLFRRFGGIQ--RVYLAKDKETG-RAKGFAFVSYYDR 253
Query: 138 KCARTAMDALHGYKFDD 154
CA A D L GY +++
Sbjct: 254 DCAIKARDRLDGYGWNN 270
>sp|Q792H5|CELF2_RAT CUGBP Elav-like family member 2 OS=Rattus norvegicus GN=Celf2 PE=2
SV=1
Length = 508
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYREIRVI----HKEPRRTGDRAMVLCFVEFDDPKCA 140
+FV +P + +E+ LF P+ +I V+ P+ G CFV F K A
Sbjct: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG-----CCFVTFYTRKAA 96
Query: 141 RTAMDALHGYK 151
A +ALH K
Sbjct: 97 LEAQNALHNIK 107
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 73 AGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRV-IHKEPRRTGDRAMVLCF 131
AGS + E LF+ LP + +++ +F PF +V I K+ + + F
Sbjct: 413 AGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT----NLSKCFGF 468
Query: 132 VEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQF 166
V +D+P A+ A+ A++G++ K+ LK+Q
Sbjct: 469 VSYDNPVSAQAAIQAMNGFQIGMKR-----LKVQL 498
>sp|Q9Z0H4|CELF2_MOUSE CUGBP Elav-like family member 2 OS=Mus musculus GN=Celf2 PE=1 SV=1
Length = 508
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYREIRVI----HKEPRRTGDRAMVLCFVEFDDPKCA 140
+FV +P + +E+ LF P+ +I V+ P+ G CFV F K A
Sbjct: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG-----CCFVTFYTRKAA 96
Query: 141 RTAMDALHGYK 151
A +ALH K
Sbjct: 97 LEAQNALHNIK 107
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 73 AGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRV-IHKEPRRTGDRAMVLCF 131
AGS + E LF+ LP + +++ +F PF +V I K+ + + F
Sbjct: 413 AGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT----NLSKCFGF 468
Query: 132 VEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQF 166
V +D+P A+ A+ A++G++ K+ LK+Q
Sbjct: 469 VSYDNPVSAQAAIQAMNGFQIGMKR-----LKVQL 498
>sp|Q5R8Y8|CELF2_PONAB CUGBP Elav-like family member 2 OS=Pongo abelii GN=CELF2 PE=2 SV=2
Length = 508
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYREIRVI----HKEPRRTGDRAMVLCFVEFDDPKCA 140
+FV +P + +E+ LF P+ +I V+ P+ G CFV F K A
Sbjct: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG-----CCFVTFYTRKAA 96
Query: 141 RTAMDALHGYK 151
A +ALH K
Sbjct: 97 LEAQNALHNIK 107
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 73 AGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRV-IHKEPRRTGDRAMVLCF 131
AGS + E LF+ LP + +++ +F PF +V I K+ + + F
Sbjct: 413 AGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT----NLSKCFGF 468
Query: 132 VEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQF 166
V +D+P A+ A+ A++G++ K+ LK+Q
Sbjct: 469 VSYDNPVSAQAAIQAMNGFQIGMKR-----LKVQL 498
>sp|O95319|CELF2_HUMAN CUGBP Elav-like family member 2 OS=Homo sapiens GN=CELF2 PE=1 SV=1
Length = 508
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYREIRVI----HKEPRRTGDRAMVLCFVEFDDPKCA 140
+FV +P + +E+ LF P+ +I V+ P+ G CFV F K A
Sbjct: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG-----CCFVTFYTRKAA 96
Query: 141 RTAMDALHGYK 151
A +ALH K
Sbjct: 97 LEAQNALHNIK 107
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 73 AGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRV-IHKEPRRTGDRAMVLCF 131
AGS + E LF+ LP + +++ +F PF +V I K+ + + F
Sbjct: 413 AGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT----NLSKCFGF 468
Query: 132 VEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQF 166
V +D+P A+ A+ A++G++ K+ LK+Q
Sbjct: 469 VSYDNPVSAQAAIQAMNGFQIGMKR-----LKVQL 498
>sp|Q07655|WHI4_YEAST Protein WHI4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI4 PE=1 SV=1
Length = 649
Score = 38.9 bits (89), Expect = 0.018, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHK---EPRRTGDRAMVLCFVEFDDPKC 139
N L+V LP D T +E+ LF G+R + +K G +CFVEF+D
Sbjct: 533 NTLYVGNLPPDATEQELRQLFSNQQGFRRLSFRNKMNSHGHGNGHGHGPICFVEFEDVSF 592
Query: 140 ARTAMDALHGYKFDDKKP 157
A A+ L+G + +P
Sbjct: 593 ATRALAELYGSQLPHPRP 610
>sp|Q6P0B1|CELF2_DANRE CUGBP Elav-like family member 2 OS=Danio rerio GN=celf2 PE=2 SV=1
Length = 514
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 85 LFVDGLPTDCTRREVSHLFRPFVGYREIRVI----HKEPRRTGDRAMVLCFVEFDDPKCA 140
+FV +P + +E+ LF P+ +I ++ P+ G CFV F K A
Sbjct: 46 MFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKG-----CCFVTFYTRKAA 100
Query: 141 RTAMDALHGYK 151
A +ALH K
Sbjct: 101 LEAQNALHNIK 111
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 70 RNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRV-IHKEPRRTGDRAMV 128
++ AGS + E LF+ LP + +++ +F PF +V I K+ + +
Sbjct: 416 QSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQT----NLSKC 471
Query: 129 LCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQF 166
FV +D+P A+ A+ A++G++ K+ LK+Q
Sbjct: 472 FGFVSYDNPVSAQAAIQAMNGFQIGMKR-----LKVQL 504
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCAR 141
S ++V LP D REV LF + +I + PR G FVEFDD AR
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQI-DLKVPPRPPG-----YAFVEFDD---AR 56
Query: 142 TAMDALH---GYKFDDKKPDSPTLKIQFAH 168
A DA+H GY FD + L+++ AH
Sbjct: 57 DAEDAIHGRDGYDFDGHR-----LRVELAH 81
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 66 PSSLRNNAGSPLKKGESN-----LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPR 120
PSS N SP++ G + L V+ LP + T+ E LF +++ +
Sbjct: 24 PSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD--K 81
Query: 121 RTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAH 168
TG +++ FV + DPK A A++ L+G + K T+K+ +A
Sbjct: 82 ITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----TIKVSYAR 123
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 66 PSSLRNNAGSPLKKG------ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEP 119
PSS N SP++ G ++NL+ V+ LP + T+ E LF +++
Sbjct: 29 PSSNNRNCPSPMQTGAATDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRD-- 85
Query: 120 RRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAH 168
+ TG +++ FV + DPK A A++ L+G + K T+K+ +A
Sbjct: 86 KITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----TIKVSYAR 128
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 66 PSSLRNNAGSPLKKG------ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEP 119
PSS N SP++ G ++NL+ V+ LP + T+ E LF +++
Sbjct: 17 PSSNNRNCPSPMQTGAATDDSKTNLI-VNYLPQNMTQEEFRSLFGSIGEIESCKLVRD-- 73
Query: 120 RRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167
+ TG +++ FV + DPK A A++ L+G + K T+K+ +A
Sbjct: 74 KITG-QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK-----TIKVSYA 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.141 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,450,590
Number of Sequences: 539616
Number of extensions: 3598856
Number of successful extensions: 7197
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 161
Number of HSP's that attempted gapping in prelim test: 6981
Number of HSP's gapped (non-prelim): 343
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)