Query 030012
Match_columns 184
No_of_seqs 196 out of 1735
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:08:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 1.5E-19 3.2E-24 134.7 12.0 83 79-169 31-113 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.8E-17 6.1E-22 138.1 13.0 83 80-170 267-349 (352)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.9E-17 6.2E-22 138.0 10.6 83 81-171 2-84 (352)
4 TIGR01659 sex-lethal sex-letha 99.7 3E-17 6.6E-22 138.2 10.7 85 78-170 103-187 (346)
5 PF00076 RRM_1: RNA recognitio 99.7 6.9E-17 1.5E-21 104.7 8.4 68 85-156 1-68 (70)
6 TIGR01659 sex-lethal sex-letha 99.7 5.3E-16 1.1E-20 130.7 11.6 84 81-170 192-275 (346)
7 KOG0121 Nuclear cap-binding pr 99.7 1.5E-16 3.3E-21 113.8 6.9 83 79-169 33-115 (153)
8 KOG0107 Alternative splicing f 99.7 3.9E-16 8.4E-21 117.2 9.1 79 81-172 9-87 (195)
9 KOG0122 Translation initiation 99.6 6.2E-16 1.3E-20 121.4 8.7 83 79-169 186-268 (270)
10 PLN03120 nucleic acid binding 99.6 1.3E-15 2.9E-20 122.1 10.7 77 82-170 4-80 (260)
11 KOG0149 Predicted RNA-binding 99.6 7.9E-16 1.7E-20 120.3 7.6 79 82-169 12-90 (247)
12 TIGR01645 half-pint poly-U bin 99.6 1.8E-15 3.9E-20 134.6 10.8 83 81-171 203-285 (612)
13 KOG0144 RNA-binding protein CU 99.6 3.7E-16 8E-21 131.0 5.1 89 80-175 122-211 (510)
14 KOG0113 U1 small nuclear ribon 99.6 4.4E-15 9.6E-20 119.6 11.1 94 78-179 97-197 (335)
15 KOG0125 Ataxin 2-binding prote 99.6 2.9E-15 6.3E-20 122.0 9.8 81 78-168 92-172 (376)
16 TIGR01645 half-pint poly-U bin 99.6 4E-15 8.7E-20 132.3 10.1 82 80-169 105-186 (612)
17 PF14259 RRM_6: RNA recognitio 99.6 7.6E-15 1.6E-19 95.7 8.9 68 85-156 1-68 (70)
18 KOG0144 RNA-binding protein CU 99.6 7.1E-15 1.5E-19 123.4 9.8 89 79-173 31-120 (510)
19 KOG0130 RNA-binding protein RB 99.6 5.5E-15 1.2E-19 106.8 7.4 83 78-168 68-150 (170)
20 KOG0105 Alternative splicing f 99.6 4.8E-15 1E-19 112.4 7.1 81 80-171 4-84 (241)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2.1E-14 4.5E-19 126.3 11.9 83 80-170 293-375 (509)
22 KOG4207 Predicted splicing fac 99.6 7.5E-15 1.6E-19 113.0 7.5 82 80-169 11-92 (256)
23 KOG0114 Predicted RNA-binding 99.6 2.9E-14 6.4E-19 98.6 9.6 80 78-168 14-93 (124)
24 TIGR01622 SF-CC1 splicing fact 99.6 1.7E-14 3.8E-19 125.3 10.5 79 82-168 186-264 (457)
25 TIGR01648 hnRNP-R-Q heterogene 99.6 1.4E-14 3E-19 128.6 9.9 80 79-167 55-135 (578)
26 TIGR01628 PABP-1234 polyadenyl 99.6 2.3E-14 5.1E-19 127.7 10.9 81 80-169 283-363 (562)
27 KOG0148 Apoptosis-promoting RN 99.6 2E-14 4.4E-19 114.5 9.3 81 76-170 158-238 (321)
28 PLN03121 nucleic acid binding 99.5 4.2E-14 9.1E-19 112.0 10.6 78 80-169 3-80 (243)
29 TIGR01628 PABP-1234 polyadenyl 99.5 2.4E-14 5.1E-19 127.7 10.2 77 84-168 2-78 (562)
30 PLN03213 repressor of silencin 99.5 2.4E-14 5.2E-19 122.2 9.4 78 80-169 8-87 (759)
31 KOG0126 Predicted RNA-binding 99.5 1.5E-15 3.2E-20 114.7 1.3 83 80-170 33-115 (219)
32 KOG0111 Cyclophilin-type pepti 99.5 6.6E-15 1.4E-19 114.3 4.7 89 79-175 7-95 (298)
33 smart00362 RRM_2 RNA recogniti 99.5 6.3E-14 1.4E-18 89.8 8.4 71 84-164 1-71 (72)
34 TIGR01648 hnRNP-R-Q heterogene 99.5 7.3E-14 1.6E-18 124.0 10.6 76 80-171 231-308 (578)
35 TIGR01622 SF-CC1 splicing fact 99.5 7.7E-14 1.7E-18 121.3 10.5 82 79-169 86-167 (457)
36 KOG0145 RNA-binding protein EL 99.5 1E-13 2.2E-18 110.1 9.3 85 79-171 38-122 (360)
37 KOG0148 Apoptosis-promoting RN 99.5 6.5E-14 1.4E-18 111.6 7.5 79 82-168 62-140 (321)
38 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 2.4E-13 5.1E-18 119.4 11.1 79 79-170 272-351 (481)
39 KOG0108 mRNA cleavage and poly 99.5 8.2E-14 1.8E-18 119.7 7.9 82 83-172 19-100 (435)
40 COG0724 RNA-binding proteins ( 99.5 2.1E-13 4.6E-18 108.1 9.8 80 82-169 115-194 (306)
41 smart00360 RRM RNA recognition 99.5 2.4E-13 5.2E-18 86.7 8.1 70 87-164 1-70 (71)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 2.5E-13 5.5E-18 119.2 9.8 75 81-169 1-77 (481)
43 cd00590 RRM RRM (RNA recogniti 99.5 7.3E-13 1.6E-17 85.2 9.5 74 84-166 1-74 (74)
44 KOG0117 Heterogeneous nuclear 99.5 3.9E-13 8.5E-18 113.4 9.7 82 79-167 80-161 (506)
45 KOG0145 RNA-binding protein EL 99.4 2.3E-12 4.9E-17 102.6 12.6 84 78-169 274-357 (360)
46 KOG0109 RNA-binding protein LA 99.4 2.7E-13 5.8E-18 109.1 6.5 76 83-174 3-78 (346)
47 KOG0131 Splicing factor 3b, su 99.4 2.5E-13 5.4E-18 102.7 5.8 82 79-168 6-87 (203)
48 KOG0117 Heterogeneous nuclear 99.4 5.1E-13 1.1E-17 112.7 7.3 79 81-175 258-336 (506)
49 KOG0127 Nucleolar protein fibr 99.4 1.8E-12 4E-17 111.8 8.6 79 81-168 116-194 (678)
50 KOG0146 RNA-binding protein ET 99.4 1.5E-12 3.3E-17 103.9 7.3 86 81-172 18-103 (371)
51 KOG0131 Splicing factor 3b, su 99.4 2E-12 4.3E-17 97.8 6.7 109 62-179 76-185 (203)
52 KOG0124 Polypyrimidine tract-b 99.3 9.1E-13 2E-17 109.1 5.1 79 83-169 114-192 (544)
53 KOG0153 Predicted RNA-binding 99.3 4.5E-12 9.8E-17 104.1 8.9 106 48-169 196-302 (377)
54 PF13893 RRM_5: RNA recognitio 99.3 8.4E-12 1.8E-16 78.0 7.5 56 99-167 1-56 (56)
55 KOG4206 Spliceosomal protein s 99.3 9.1E-12 2E-16 97.2 8.7 82 79-171 6-91 (221)
56 KOG0127 Nucleolar protein fibr 99.3 1E-11 2.2E-16 107.3 9.8 83 78-168 288-376 (678)
57 smart00361 RRM_1 RNA recogniti 99.3 2.1E-11 4.5E-16 79.8 7.3 60 96-156 2-66 (70)
58 KOG0146 RNA-binding protein ET 99.3 5.9E-12 1.3E-16 100.5 5.4 84 78-169 281-364 (371)
59 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.9E-11 4E-16 107.7 8.2 76 78-168 171-258 (509)
60 KOG4212 RNA-binding protein hn 99.2 2.4E-11 5.2E-16 102.7 8.0 80 81-169 43-123 (608)
61 KOG0147 Transcriptional coacti 99.2 1.2E-11 2.7E-16 106.7 6.1 76 84-167 280-355 (549)
62 KOG0132 RNA polymerase II C-te 99.2 2.5E-11 5.4E-16 108.3 7.7 79 82-174 421-499 (894)
63 KOG0123 Polyadenylate-binding 99.2 6E-11 1.3E-15 100.8 8.5 74 85-169 79-152 (369)
64 KOG1457 RNA binding protein (c 99.2 9.3E-10 2E-14 86.0 13.1 87 79-169 31-117 (284)
65 KOG0110 RNA-binding protein (R 99.2 2.8E-11 6E-16 107.1 5.0 81 81-169 612-692 (725)
66 KOG0415 Predicted peptidyl pro 99.2 5.1E-11 1.1E-15 98.4 6.2 83 79-169 236-318 (479)
67 KOG4208 Nucleolar RNA-binding 99.2 1.4E-10 2.9E-15 89.5 8.0 85 78-170 45-130 (214)
68 KOG0109 RNA-binding protein LA 99.1 9.8E-11 2.1E-15 94.5 5.8 74 80-169 76-149 (346)
69 KOG4212 RNA-binding protein hn 99.1 4.8E-10 1E-14 94.9 10.0 76 79-167 533-608 (608)
70 KOG0124 Polypyrimidine tract-b 99.1 2.7E-10 5.8E-15 94.6 6.7 81 81-169 209-289 (544)
71 KOG0110 RNA-binding protein (R 99.1 7.2E-10 1.6E-14 98.3 8.9 80 84-168 517-596 (725)
72 KOG4661 Hsp27-ERE-TATA-binding 98.9 3E-09 6.5E-14 92.7 7.9 82 81-170 404-485 (940)
73 KOG4205 RNA-binding protein mu 98.9 2E-09 4.3E-14 89.2 4.7 72 81-156 5-76 (311)
74 KOG0106 Alternative splicing f 98.9 2E-09 4.4E-14 84.5 4.5 72 83-170 2-73 (216)
75 KOG1548 Transcription elongati 98.8 1E-08 2.2E-13 84.6 7.7 81 80-169 132-220 (382)
76 KOG0533 RRM motif-containing p 98.8 1.5E-08 3.2E-13 81.2 8.0 82 80-170 81-162 (243)
77 KOG0123 Polyadenylate-binding 98.8 1.8E-08 3.8E-13 85.8 7.8 72 83-168 2-73 (369)
78 KOG4660 Protein Mei2, essentia 98.7 1.1E-08 2.3E-13 88.9 5.2 70 79-156 72-141 (549)
79 KOG4209 Splicing factor RNPS1, 98.7 4.1E-08 8.9E-13 78.5 8.1 82 79-169 98-179 (231)
80 KOG0116 RasGAP SH3 binding pro 98.7 3.3E-08 7.2E-13 84.9 7.1 80 81-169 287-366 (419)
81 KOG0151 Predicted splicing reg 98.7 5.6E-08 1.2E-12 86.6 8.1 86 79-169 171-256 (877)
82 KOG4454 RNA binding protein (R 98.7 7.6E-09 1.6E-13 80.7 2.0 80 79-168 6-85 (267)
83 KOG4205 RNA-binding protein mu 98.6 7.3E-08 1.6E-12 80.0 7.0 80 81-169 96-175 (311)
84 KOG1457 RNA binding protein (c 98.5 8.2E-08 1.8E-12 75.2 3.8 70 79-155 207-276 (284)
85 KOG0120 Splicing factor U2AF, 98.5 1.4E-07 3E-12 82.3 4.7 85 79-171 286-370 (500)
86 PF04059 RRM_2: RNA recognitio 98.5 1.7E-06 3.7E-11 60.0 9.1 84 83-170 2-87 (97)
87 KOG4206 Spliceosomal protein s 98.5 7.5E-07 1.6E-11 69.8 7.8 78 79-168 143-220 (221)
88 KOG1190 Polypyrimidine tract-b 98.4 3.3E-06 7.2E-11 71.4 11.8 75 82-169 297-372 (492)
89 PF11608 Limkain-b1: Limkain b 98.4 1.1E-06 2.3E-11 59.0 6.7 72 83-172 3-79 (90)
90 KOG0226 RNA-binding proteins [ 98.4 3E-07 6.5E-12 73.3 4.6 73 81-156 189-261 (290)
91 KOG1995 Conserved Zn-finger pr 98.3 1.9E-06 4.2E-11 71.6 7.2 82 79-168 63-152 (351)
92 KOG4211 Splicing factor hnRNP- 98.2 6.3E-06 1.4E-10 71.1 7.9 76 80-167 8-83 (510)
93 PF08777 RRM_3: RNA binding mo 98.0 2E-05 4.2E-10 55.6 6.7 59 83-150 2-60 (105)
94 KOG0106 Alternative splicing f 98.0 7.3E-06 1.6E-10 64.6 4.0 73 79-167 96-168 (216)
95 KOG4849 mRNA cleavage factor I 98.0 7.4E-06 1.6E-10 68.2 3.7 79 83-168 81-161 (498)
96 KOG1456 Heterogeneous nuclear 97.9 6.4E-05 1.4E-09 63.2 8.5 82 79-171 117-200 (494)
97 KOG0147 Transcriptional coacti 97.8 6.3E-06 1.4E-10 71.9 1.6 81 79-168 176-256 (549)
98 KOG4210 Nuclear localization s 97.8 2.3E-05 5E-10 64.7 4.3 82 79-169 181-263 (285)
99 KOG4211 Splicing factor hnRNP- 97.7 0.00021 4.6E-09 61.9 8.7 77 81-167 102-179 (510)
100 KOG2314 Translation initiation 97.7 0.00011 2.3E-09 64.7 6.6 80 80-167 56-141 (698)
101 KOG0129 Predicted RNA-binding 97.7 0.00013 2.9E-09 63.4 6.9 67 80-147 257-326 (520)
102 KOG1190 Polypyrimidine tract-b 97.6 0.00016 3.4E-09 61.5 6.8 79 80-169 412-490 (492)
103 KOG1855 Predicted RNA-binding 97.6 0.00011 2.4E-09 62.7 5.6 72 78-149 227-308 (484)
104 KOG1456 Heterogeneous nuclear 97.5 0.0052 1.1E-07 52.0 14.4 81 78-171 283-364 (494)
105 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00038 8.2E-09 42.9 4.9 52 83-144 2-53 (53)
106 COG5175 MOT2 Transcriptional r 97.4 0.00056 1.2E-08 57.0 7.2 81 81-168 113-201 (480)
107 KOG0120 Splicing factor U2AF, 97.4 0.00057 1.2E-08 60.1 7.5 65 98-167 425-489 (500)
108 KOG2193 IGF-II mRNA-binding pr 97.4 9.1E-05 2E-09 63.2 2.5 85 83-183 2-89 (584)
109 KOG4307 RNA binding protein RB 97.4 0.0022 4.7E-08 58.0 11.0 75 83-166 868-943 (944)
110 KOG0129 Predicted RNA-binding 97.3 0.00076 1.6E-08 58.8 6.7 68 76-146 364-432 (520)
111 KOG0128 RNA-binding protein SA 97.2 0.00016 3.5E-09 66.2 2.3 83 82-173 736-818 (881)
112 KOG0112 Large RNA-binding prot 97.2 0.00083 1.8E-08 62.0 6.0 85 79-175 452-536 (975)
113 KOG1548 Transcription elongati 97.1 0.0016 3.4E-08 54.4 6.9 77 79-167 262-349 (382)
114 KOG2416 Acinus (induces apopto 97.1 0.00051 1.1E-08 60.9 4.2 80 78-168 440-520 (718)
115 KOG0105 Alternative splicing f 97.0 0.0027 5.8E-08 48.9 6.8 66 79-154 112-177 (241)
116 KOG4676 Splicing factor, argin 97.0 0.00084 1.8E-08 56.9 4.1 73 83-156 8-80 (479)
117 KOG3152 TBP-binding protein, a 96.9 0.0006 1.3E-08 54.7 2.7 76 81-156 73-157 (278)
118 PF10309 DUF2414: Protein of u 96.9 0.0049 1.1E-07 39.2 6.1 56 81-147 4-62 (62)
119 KOG2253 U1 snRNP complex, subu 96.9 0.0017 3.7E-08 58.2 5.2 67 78-156 36-102 (668)
120 PF03467 Smg4_UPF3: Smg-4/UPF3 96.7 0.0039 8.5E-08 47.9 5.5 88 80-169 5-97 (176)
121 KOG1365 RNA-binding protein Fu 96.7 0.0024 5.3E-08 54.1 4.5 79 80-167 278-359 (508)
122 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.01 2.3E-07 41.4 6.8 80 82-167 6-89 (100)
123 PF08952 DUF1866: Domain of un 96.5 0.0088 1.9E-07 44.4 5.7 72 80-168 25-105 (146)
124 KOG4307 RNA binding protein RB 96.4 0.0077 1.7E-07 54.6 6.0 83 75-166 427-510 (944)
125 KOG1365 RNA-binding protein Fu 96.4 0.022 4.7E-07 48.5 8.3 59 83-145 162-224 (508)
126 PF08675 RNA_bind: RNA binding 96.4 0.029 6.3E-07 37.7 7.2 56 81-148 8-63 (87)
127 KOG1996 mRNA splicing factor [ 96.1 0.02 4.4E-07 47.1 6.5 66 96-168 300-365 (378)
128 PF07576 BRAP2: BRCA1-associat 95.9 0.15 3.2E-06 36.2 9.3 71 82-157 13-84 (110)
129 KOG2202 U2 snRNP splicing fact 95.7 0.0054 1.2E-07 49.3 1.7 60 99-167 85-145 (260)
130 KOG0115 RNA-binding protein p5 95.7 0.012 2.7E-07 47.3 3.6 62 83-148 32-93 (275)
131 KOG0112 Large RNA-binding prot 95.6 0.0037 7.9E-08 57.9 0.4 79 80-167 370-448 (975)
132 KOG0128 RNA-binding protein SA 95.4 0.001 2.2E-08 61.0 -3.9 69 82-153 667-735 (881)
133 KOG2068 MOT2 transcription fac 95.1 0.011 2.3E-07 49.4 1.5 84 81-171 76-164 (327)
134 PF04847 Calcipressin: Calcipr 94.8 0.052 1.1E-06 42.0 4.6 61 95-169 8-70 (184)
135 KOG2591 c-Mpl binding protein, 94.4 0.17 3.8E-06 45.0 7.2 78 82-172 175-261 (684)
136 PF15023 DUF4523: Protein of u 94.4 0.32 7E-06 36.1 7.5 73 80-168 84-160 (166)
137 KOG4574 RNA-binding protein (c 93.9 0.039 8.4E-07 51.2 2.3 75 83-169 299-373 (1007)
138 PF03880 DbpA: DbpA RNA bindin 92.2 0.58 1.3E-05 30.5 5.5 67 84-167 2-74 (74)
139 KOG0804 Cytoplasmic Zn-finger 91.6 0.79 1.7E-05 40.0 7.0 72 82-158 74-146 (493)
140 PF11767 SET_assoc: Histone ly 91.4 0.83 1.8E-05 29.3 5.4 52 93-156 11-62 (66)
141 KOG4660 Protein Mei2, essentia 90.7 0.49 1.1E-05 42.1 5.1 44 125-169 429-472 (549)
142 KOG4210 Nuclear localization s 90.4 0.24 5.1E-06 41.0 2.8 74 80-156 86-159 (285)
143 KOG2135 Proteins containing th 89.4 0.2 4.4E-06 43.7 1.6 72 83-169 373-445 (526)
144 KOG4676 Splicing factor, argin 89.0 0.11 2.3E-06 44.5 -0.3 65 81-153 150-214 (479)
145 KOG4285 Mitotic phosphoprotein 86.8 1.1 2.4E-05 37.2 4.3 58 87-155 202-259 (350)
146 KOG4410 5-formyltetrahydrofola 85.5 0.83 1.8E-05 37.7 2.9 50 82-139 330-379 (396)
147 KOG2891 Surface glycoprotein [ 78.4 1.5 3.2E-05 36.2 2.0 90 79-169 146-267 (445)
148 KOG2318 Uncharacterized conser 78.4 15 0.00033 33.3 8.3 78 78-155 170-296 (650)
149 KOG2193 IGF-II mRNA-binding pr 77.5 0.083 1.8E-06 45.6 -5.6 77 80-167 78-154 (584)
150 KOG4483 Uncharacterized conser 68.7 11 0.00025 32.6 5.0 58 79-146 388-446 (528)
151 PF03468 XS: XS domain; Inter 59.1 17 0.00037 25.9 3.8 46 94-145 29-75 (116)
152 KOG4454 RNA binding protein (R 58.2 2.9 6.3E-05 33.4 -0.3 73 80-156 78-154 (267)
153 PF15513 DUF4651: Domain of un 56.5 27 0.00059 22.1 3.9 20 97-116 9-28 (62)
154 KOG1295 Nonsense-mediated deca 56.0 18 0.00038 31.1 3.9 74 81-156 6-81 (376)
155 PF07292 NID: Nmi/IFP 35 domai 52.0 10 0.00022 25.8 1.6 26 79-104 49-74 (88)
156 COG0724 RNA-binding proteins ( 51.3 28 0.00061 26.6 4.4 39 78-116 221-259 (306)
157 PF08261 Carcinustatin: Carcin 50.9 8 0.00017 14.2 0.5 6 3-8 3-8 (8)
158 PF11411 DNA_ligase_IV: DNA li 46.0 13 0.00028 20.9 1.1 16 92-107 19-34 (36)
159 KOG4365 Uncharacterized conser 45.0 3.9 8.4E-05 35.8 -1.6 78 83-169 4-81 (572)
160 PF08734 GYD: GYD domain; Int 38.1 1.2E+02 0.0027 20.3 5.9 45 96-147 22-67 (91)
161 KOG4008 rRNA processing protei 33.5 30 0.00066 27.9 1.9 34 79-112 37-70 (261)
162 PF09707 Cas_Cas2CT1978: CRISP 33.2 96 0.0021 20.9 4.0 49 81-135 24-72 (86)
163 KOG4019 Calcineurin-mediated s 30.2 83 0.0018 24.4 3.7 75 81-168 9-88 (193)
164 PF10567 Nab6_mRNP_bdg: RNA-re 30.0 99 0.0022 25.8 4.3 61 82-142 15-79 (309)
165 COG5638 Uncharacterized conser 29.7 2.2E+02 0.0048 25.1 6.5 80 76-155 140-286 (622)
166 PF00054 Laminin_G_1: Laminin 28.8 18 0.00039 25.8 -0.1 35 80-114 90-125 (131)
167 PTZ00071 40S ribosomal protein 26.8 1.8E+02 0.004 21.2 4.9 47 93-140 35-84 (132)
168 COG5353 Uncharacterized protei 25.5 2.6E+02 0.0056 21.0 5.4 57 83-139 88-154 (161)
169 PF03439 Spt5-NGN: Early trans 25.4 1.4E+02 0.003 19.7 3.8 27 125-151 42-68 (84)
170 KOG3424 40S ribosomal protein 24.9 1.6E+02 0.0035 21.2 4.2 45 93-140 34-82 (132)
171 PHA01632 hypothetical protein 24.2 75 0.0016 19.7 2.0 19 87-105 21-39 (64)
172 PRK11558 putative ssRNA endonu 23.5 1.5E+02 0.0032 20.5 3.6 50 81-136 26-75 (97)
173 PF08544 GHMP_kinases_C: GHMP 23.5 2E+02 0.0043 18.1 4.8 44 97-148 37-80 (85)
174 COG0150 PurM Phosphoribosylami 23.3 17 0.00037 30.9 -1.2 47 97-150 276-322 (345)
175 KOG2187 tRNA uracil-5-methyltr 22.3 85 0.0018 28.4 2.8 37 128-169 64-100 (534)
176 COG0030 KsgA Dimethyladenosine 21.1 1.4E+02 0.003 24.4 3.7 31 82-112 95-125 (259)
177 PF15407 Spo7_2_N: Sporulation 20.8 31 0.00067 22.1 -0.1 26 80-105 25-50 (67)
178 PRK14548 50S ribosomal protein 20.8 2.7E+02 0.0059 18.6 4.7 56 85-146 23-80 (84)
179 KOG2295 C2H2 Zn-finger protein 20.8 15 0.00032 33.2 -2.1 71 82-155 231-301 (648)
180 TIGR03636 L23_arch archaeal ri 20.6 2.6E+02 0.0056 18.3 4.8 56 84-145 15-72 (77)
181 cd00027 BRCT Breast Cancer Sup 20.6 1.3E+02 0.0028 17.5 2.8 29 83-111 2-30 (72)
182 PF11823 DUF3343: Protein of u 20.3 1.2E+02 0.0025 19.3 2.6 25 129-153 3-27 (73)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=1.5e-19 Score=134.74 Aligned_cols=83 Identities=22% Similarity=0.356 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
...+++|||+|||++++|++|+++|++||.|.+|+++.+. .+++++|||||+|.+.++|++|++.||+.+|.++.
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~-- 105 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDR---ETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH-- 105 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecC---CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE--
Confidence 4567899999999999999999999999999999998853 34789999999999999999999999999999997
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
|+|+|++.
T Consensus 106 ---l~V~~a~~ 113 (144)
T PLN03134 106 ---IRVNPAND 113 (144)
T ss_pred ---EEEEeCCc
Confidence 99999965
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.74 E-value=2.8e-17 Score=138.08 Aligned_cols=83 Identities=24% Similarity=0.416 Sum_probs=75.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
..+.+|||+|||+++++++|+++|++||.|.+++++.+. .++.++|||||+|.+.++|.+||+.|||+.+.|+.
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~---~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~--- 340 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDL---TTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRV--- 340 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcC---CCCCccceEEEEECCHHHHHHHHHHhCCCEECCeE---
Confidence 445689999999999999999999999999999999853 23789999999999999999999999999999998
Q ss_pred CceEEEeecCC
Q 030012 160 PTLKIQFAHFP 170 (184)
Q Consensus 160 ~~l~V~~a~~~ 170 (184)
|+|+|..+.
T Consensus 341 --i~V~~~~~~ 349 (352)
T TIGR01661 341 --LQVSFKTNK 349 (352)
T ss_pred --EEEEEccCC
Confidence 999998653
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=2.9e-17 Score=138.05 Aligned_cols=83 Identities=22% Similarity=0.422 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
...+|||+|||.+++|++|+++|++||.|.+|+|+.++ .+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~---~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~---- 74 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDK---VTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKT---- 74 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcC---CCCccceEEEEEECcHHHHHHHHhhcccEEECCee----
Confidence 46799999999999999999999999999999999853 33789999999999999999999999999999998
Q ss_pred ceEEEeecCCC
Q 030012 161 TLKIQFAHFPF 171 (184)
Q Consensus 161 ~l~V~~a~~~~ 171 (184)
|+|.|++...
T Consensus 75 -i~v~~a~~~~ 84 (352)
T TIGR01661 75 -IKVSYARPSS 84 (352)
T ss_pred -EEEEeecccc
Confidence 9999997543
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=3e-17 Score=138.16 Aligned_cols=85 Identities=26% Similarity=0.407 Sum_probs=77.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++||++|+++|+.||.|++|+|+.+. .+++++|||||+|.++++|++|++.|||.++.++.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~---~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~- 178 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDY---KTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKR- 178 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCccCcEEEEEEccHHHHHHHHHHcCCCccCCce-
Confidence 44567899999999999999999999999999999998853 34789999999999999999999999999999997
Q ss_pred CCCceEEEeecCC
Q 030012 158 DSPTLKIQFAHFP 170 (184)
Q Consensus 158 ~~~~l~V~~a~~~ 170 (184)
|+|.|++..
T Consensus 179 ----i~V~~a~p~ 187 (346)
T TIGR01659 179 ----LKVSYARPG 187 (346)
T ss_pred ----eeeeccccc
Confidence 999999754
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.71 E-value=6.9e-17 Score=104.69 Aligned_cols=68 Identities=31% Similarity=0.580 Sum_probs=63.5
Q ss_pred EEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 85 LFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 85 lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
|||+|||.++|+++|+++|++||.|..+.+..+. .++.++||||+|.+.++|++|++.|||..+.++.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~----~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ 68 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS----SGKSKGYAFVEFESEEDAEKALEELNGKKINGRK 68 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET----TSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc----cccccceEEEEEcCHHHHHHHHHHcCCCEECccC
Confidence 7999999999999999999999999999998752 2688999999999999999999999999999975
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=5.3e-16 Score=130.67 Aligned_cols=84 Identities=18% Similarity=0.302 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
..++|||+|||+++||++|+++|++||.|++|+|+.++ .+++++|||||+|.+.++|++||+.||+..+.+.. .
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~---~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~---~ 265 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK---LTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGS---Q 265 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC---CCCccceEEEEEECCHHHHHHHHHHhCCCccCCCc---e
Confidence 45789999999999999999999999999999998743 34789999999999999999999999999998752 3
Q ss_pred ceEEEeecCC
Q 030012 161 TLKIQFAHFP 170 (184)
Q Consensus 161 ~l~V~~a~~~ 170 (184)
+|+|.|++..
T Consensus 266 ~l~V~~a~~~ 275 (346)
T TIGR01659 266 PLTVRLAEEH 275 (346)
T ss_pred eEEEEECCcc
Confidence 5999999753
No 7
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.5e-16 Score=113.83 Aligned_cols=83 Identities=22% Similarity=0.316 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
...+++||||||++.++||+|.++|+++|+|+.|.+-.+. ....+.|||||+|.+.++|+.|++-++|..++.+.
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr---~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~-- 107 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDR---FKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRP-- 107 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEecccc---CCcCccceEEEEEecchhHHHHHHHhccCcccccc--
Confidence 4568999999999999999999999999999998776643 33568899999999999999999999999999996
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
|+++|...
T Consensus 108 ---ir~D~D~G 115 (153)
T KOG0121|consen 108 ---IRIDWDAG 115 (153)
T ss_pred ---eeeecccc
Confidence 99999753
No 8
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=3.9e-16 Score=117.16 Aligned_cols=79 Identities=23% Similarity=0.406 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
-.++||||||+..+++.||+.+|..||.+.+|.|... +.|||||||++..+|+.|+..|+|..|.|.+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn--------PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r---- 76 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN--------PPGFAFVEFEDPRDAEDAVRYLDGKDICGSR---- 76 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec--------CCCceEEeccCcccHHHHHhhcCCccccCce----
Confidence 4689999999999999999999999999999988652 3469999999999999999999999999998
Q ss_pred ceEEEeecCCCC
Q 030012 161 TLKIQFAHFPFH 172 (184)
Q Consensus 161 ~l~V~~a~~~~~ 172 (184)
|+|++.+....
T Consensus 77 -~rVE~S~G~~r 87 (195)
T KOG0107|consen 77 -IRVELSTGRPR 87 (195)
T ss_pred -EEEEeecCCcc
Confidence 99999986544
No 9
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=6.2e-16 Score=121.45 Aligned_cols=83 Identities=22% Similarity=0.436 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
-+..++|-|.||+.+++|++|+++|.+||.|..+.|.++ +.+|.+||||||.|+++++|.+||+.|||+-++.-.
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylard---K~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LI-- 260 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARD---KETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLI-- 260 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEc---cccCcccceEEEEEecHHHHHHHHHHccCcccceEE--
Confidence 346789999999999999999999999999999999985 445899999999999999999999999999998876
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
|+|+|+++
T Consensus 261 ---LrvEwskP 268 (270)
T KOG0122|consen 261 ---LRVEWSKP 268 (270)
T ss_pred ---EEEEecCC
Confidence 99999975
No 10
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.65 E-value=1.3e-15 Score=122.09 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=70.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCc
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 161 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~ 161 (184)
.++|||+||++.++|++|+++|+.||.|.+|+|+.+. .++|||||+|.+.++|+.|+. |+|..|.|+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~------~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~----- 71 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN------ERSQIAYVTFKDPQGAETALL-LSGATIVDQS----- 71 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC------CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCce-----
Confidence 5799999999999999999999999999999998752 246799999999999999995 9999999998
Q ss_pred eEEEeecCC
Q 030012 162 LKIQFAHFP 170 (184)
Q Consensus 162 l~V~~a~~~ 170 (184)
|+|+++...
T Consensus 72 V~Vt~a~~~ 80 (260)
T PLN03120 72 VTITPAEDY 80 (260)
T ss_pred EEEEeccCC
Confidence 999999753
No 11
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=7.9e-16 Score=120.30 Aligned_cols=79 Identities=24% Similarity=0.335 Sum_probs=68.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCc
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 161 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~ 161 (184)
-.+||||+|+|+++.|+|+++|++||+|++..++.+ +.+|++|||+||+|.|.++|++|++- -.-.|+||+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd---~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~----- 82 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITD---KNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRK----- 82 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEec---cCCccccceeeEEeecHHHHHHHhcC-CCCcccccc-----
Confidence 468999999999999999999999999999999985 44589999999999999999999963 347889987
Q ss_pred eEEEeecC
Q 030012 162 LKIQFAHF 169 (184)
Q Consensus 162 l~V~~a~~ 169 (184)
-.++.|.-
T Consensus 83 aNcnlA~l 90 (247)
T KOG0149|consen 83 ANCNLASL 90 (247)
T ss_pred cccchhhh
Confidence 66666654
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.63 E-value=1.8e-15 Score=134.58 Aligned_cols=83 Identities=14% Similarity=0.303 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
..++|||+||++++++++|+++|+.||.|++|++.++. .+++++|||||+|++.++|.+|++.||++++.|+.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~---~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~---- 275 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP---TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQY---- 275 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC---CCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeE----
Confidence 45799999999999999999999999999999999853 34789999999999999999999999999999998
Q ss_pred ceEEEeecCCC
Q 030012 161 TLKIQFAHFPF 171 (184)
Q Consensus 161 ~l~V~~a~~~~ 171 (184)
|+|.++..+.
T Consensus 276 -LrV~kAi~pP 285 (612)
T TIGR01645 276 -LRVGKCVTPP 285 (612)
T ss_pred -EEEEecCCCc
Confidence 9999998643
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=3.7e-16 Score=131.03 Aligned_cols=89 Identities=26% Similarity=0.364 Sum_probs=79.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcC-CeeCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG-YKFDDKKPD 158 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g-~~~~g~~~~ 158 (184)
...++||||.|+..+||.|++++|++||.|++|.|++++. +.+||||||+|.+.+.|..||+.||| +++.|.
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~----~~sRGcaFV~fstke~A~~Aika~ng~~tmeGc--- 194 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD----GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGC--- 194 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc----ccccceeEEEEehHHHHHHHHHhhccceeeccC---
Confidence 3478999999999999999999999999999999998754 78999999999999999999999999 778887
Q ss_pred CCceEEEeecCCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~~ 175 (184)
+.||.|.||...+.+..
T Consensus 195 s~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 195 SQPLVVKFADTQKDKDG 211 (510)
T ss_pred CCceEEEecccCCCchH
Confidence 58999999987665543
No 14
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=4.4e-15 Score=119.56 Aligned_cols=94 Identities=17% Similarity=0.316 Sum_probs=82.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
..++-+||||+-|+.+++|++|+..|+.||.|+.|+|+.+ +.+|+++|||||+|+++.+...|.+..+|.+|+|++
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d---~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr- 172 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRD---KVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR- 172 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeee---cccCCccceEEEEeccHHHHHHHHHhccCceecCcE-
Confidence 4567789999999999999999999999999999999995 445899999999999999999999999999999998
Q ss_pred CCCceEEEeecC-------CCCCCCCCCC
Q 030012 158 DSPTLKIQFAHF-------PFHLPSDGDE 179 (184)
Q Consensus 158 ~~~~l~V~~a~~-------~~~~~~~~~~ 179 (184)
|.|++-+. |++..+..++
T Consensus 173 ----i~VDvERgRTvkgW~PRRLGGGLGg 197 (335)
T KOG0113|consen 173 ----ILVDVERGRTVKGWLPRRLGGGLGG 197 (335)
T ss_pred ----EEEEecccccccccccccccCCcCC
Confidence 99998764 5555544444
No 15
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=2.9e-15 Score=121.96 Aligned_cols=81 Identities=22% Similarity=0.381 Sum_probs=74.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
..+..++|+|+|||+...|-||+.+|++||.|.+|+|+..|. -+|||+||+|++.++|++|-++|||..+.||+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER-----GSKGFGFVTmen~~dadRARa~LHgt~VEGRk- 165 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER-----GSKGFGFVTMENPADADRARAELHGTVVEGRK- 165 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC-----CCCccceEEecChhhHHHHHHHhhcceeeceE-
Confidence 456678999999999999999999999999999999998764 26899999999999999999999999999999
Q ss_pred CCCceEEEeec
Q 030012 158 DSPTLKIQFAH 168 (184)
Q Consensus 158 ~~~~l~V~~a~ 168 (184)
|.|+.|.
T Consensus 166 ----IEVn~AT 172 (376)
T KOG0125|consen 166 ----IEVNNAT 172 (376)
T ss_pred ----EEEeccc
Confidence 9999874
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=4e-15 Score=132.34 Aligned_cols=82 Identities=16% Similarity=0.334 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
...++|||+||++++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D---~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~--- 178 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWD---PATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN--- 178 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeec---CCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecce---
Confidence 34579999999999999999999999999999999884 334789999999999999999999999999999998
Q ss_pred CceEEEeecC
Q 030012 160 PTLKIQFAHF 169 (184)
Q Consensus 160 ~~l~V~~a~~ 169 (184)
|+|.+..+
T Consensus 179 --IkV~rp~~ 186 (612)
T TIGR01645 179 --IKVGRPSN 186 (612)
T ss_pred --eeeccccc
Confidence 99987654
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.60 E-value=7.6e-15 Score=95.66 Aligned_cols=68 Identities=25% Similarity=0.557 Sum_probs=61.0
Q ss_pred EEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 85 LFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 85 lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
|||+|||+++++++|+++|+.||.|..+++... +. +..+++|||+|.+.++|++|++.+++..+.|+.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~---~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKN---KD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEES---TT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEee---ec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 799999999999999999999999999999874 33 578999999999999999999999999999975
No 18
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=7.1e-15 Score=123.40 Aligned_cols=89 Identities=22% Similarity=0.415 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcC-CeeCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG-YKFDDKKP 157 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g-~~~~g~~~ 157 (184)
+...-+||||-+|..++|+||+++|++||.|.+|.|++| +.++.++|||||+|.+.++|.+|+.+||. +.+.|-
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kD---k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~-- 105 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKD---KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM-- 105 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecc---cccCcccceEEEEeccHHHHHHHHHHhhcccccCCC--
Confidence 344569999999999999999999999999999999995 44479999999999999999999999987 555554
Q ss_pred CCCceEEEeecCCCCC
Q 030012 158 DSPTLKIQFAHFPFHL 173 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~ 173 (184)
.++|+|.||..++.+
T Consensus 106 -~~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 106 -HHPVQVKYADGERER 120 (510)
T ss_pred -Ccceeecccchhhhc
Confidence 589999999877655
No 19
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=5.5e-15 Score=106.78 Aligned_cols=83 Identities=20% Similarity=0.384 Sum_probs=76.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
..-.++.|||.++..++||++|.+.|..||+|+++.|-.+ +.+|-.+|||+|+|++.+.|++|++.+||..+.+++
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLD---RRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~- 143 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLD---RRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN- 143 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccc---cccccccceeeeehHhHHHHHHHHHhccchhhhCCc-
Confidence 3456789999999999999999999999999999998774 445899999999999999999999999999999998
Q ss_pred CCCceEEEeec
Q 030012 158 DSPTLKIQFAH 168 (184)
Q Consensus 158 ~~~~l~V~~a~ 168 (184)
|.|+|+-
T Consensus 144 ----v~VDw~F 150 (170)
T KOG0130|consen 144 ----VSVDWCF 150 (170)
T ss_pred ----eeEEEEE
Confidence 9999984
No 20
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4.8e-15 Score=112.37 Aligned_cols=81 Identities=30% Similarity=0.545 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
...++|||+|||.++.|.||+++|.+||.|.+|.|... . ..-.||||+|++..+|+.||..-+|+.++|.+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r----~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~r--- 74 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR----P--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCR--- 74 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC----C--CCCCeeEEEecCccchhhhhhcccccccCcce---
Confidence 45689999999999999999999999999999998542 1 23459999999999999999999999999998
Q ss_pred CceEEEeecCCC
Q 030012 160 PTLKIQFAHFPF 171 (184)
Q Consensus 160 ~~l~V~~a~~~~ 171 (184)
|+|+|++..+
T Consensus 75 --LRVEfprggr 84 (241)
T KOG0105|consen 75 --LRVEFPRGGR 84 (241)
T ss_pred --EEEEeccCCC
Confidence 9999998764
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.57 E-value=2.1e-14 Score=126.34 Aligned_cols=83 Identities=22% Similarity=0.382 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
...++|||+|||..+++++|+++|+.||.|..+.++.+. .+|.++|||||+|.+.++|+.|++.|||..+.|+.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~---~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~--- 366 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDI---ATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNK--- 366 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeE---
Confidence 345799999999999999999999999999999998743 34789999999999999999999999999999998
Q ss_pred CceEEEeecCC
Q 030012 160 PTLKIQFAHFP 170 (184)
Q Consensus 160 ~~l~V~~a~~~ 170 (184)
|.|.++...
T Consensus 367 --l~v~~a~~~ 375 (509)
T TIGR01642 367 --LHVQRACVG 375 (509)
T ss_pred --EEEEECccC
Confidence 999998643
No 22
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=7.5e-15 Score=112.99 Aligned_cols=82 Identities=22% Similarity=0.395 Sum_probs=75.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
+.-..|-|-||.+.++.++|+.+|++||.|-+|.|.++. .+..++|||||.|.+..+|+.|+++|+|.+++|+.
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr---~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRe--- 84 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDR---YTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRE--- 84 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceeccccc---ccccccceeEEEeeecchHHHHHHhhcceeeccce---
Confidence 444688999999999999999999999999999998853 34689999999999999999999999999999998
Q ss_pred CceEEEeecC
Q 030012 160 PTLKIQFAHF 169 (184)
Q Consensus 160 ~~l~V~~a~~ 169 (184)
|+|++|+.
T Consensus 85 --lrVq~ary 92 (256)
T KOG4207|consen 85 --LRVQMARY 92 (256)
T ss_pred --eeehhhhc
Confidence 99999975
No 23
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=2.9e-14 Score=98.62 Aligned_cols=80 Identities=26% Similarity=0.437 Sum_probs=72.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
+...++.|||.|||+.+|.|+..++|.+||.|+.|++-.. ...+|.|||.|++..+|.+|++.|+|+.+.++-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~------k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ry- 86 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT------KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRY- 86 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc------cCcCceEEEEehHhhhHHHHHHHhcccccCCce-
Confidence 4567899999999999999999999999999999999653 235789999999999999999999999999997
Q ss_pred CCCceEEEeec
Q 030012 158 DSPTLKIQFAH 168 (184)
Q Consensus 158 ~~~~l~V~~a~ 168 (184)
|.|-|..
T Consensus 87 ----l~vlyyq 93 (124)
T KOG0114|consen 87 ----LVVLYYQ 93 (124)
T ss_pred ----EEEEecC
Confidence 9888864
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.56 E-value=1.7e-14 Score=125.32 Aligned_cols=79 Identities=22% Similarity=0.505 Sum_probs=73.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCc
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 161 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~ 161 (184)
.++|||+|||..+++++|+++|++||.|..|+++.+. .+|+++|||||+|.+.++|.+|++.|||+.+.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~---~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~----- 257 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP---ETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRP----- 257 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC---CCCccceEEEEEECCHHHHHHHHHhcCCcEECCEE-----
Confidence 6899999999999999999999999999999998753 33688999999999999999999999999999997
Q ss_pred eEEEeec
Q 030012 162 LKIQFAH 168 (184)
Q Consensus 162 l~V~~a~ 168 (184)
|+|.|+.
T Consensus 258 i~v~~a~ 264 (457)
T TIGR01622 258 IKVGYAQ 264 (457)
T ss_pred EEEEEcc
Confidence 9999975
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.56 E-value=1.4e-14 Score=128.58 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC-CCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD-DKKP 157 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~-g~~~ 157 (184)
....++|||+|||++++|++|+++|++||.|.+|+|+.+.+ ++++|||||+|.+.++|++||+.||+.++. ++.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~s----G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~- 129 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFS----GQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRL- 129 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCC----CCccceEEEEeCCHHHHHHHHHHcCCCeecCCcc-
Confidence 34568999999999999999999999999999999998633 789999999999999999999999999996 444
Q ss_pred CCCceEEEee
Q 030012 158 DSPTLKIQFA 167 (184)
Q Consensus 158 ~~~~l~V~~a 167 (184)
|.|.++
T Consensus 130 ----l~V~~S 135 (578)
T TIGR01648 130 ----LGVCIS 135 (578)
T ss_pred ----cccccc
Confidence 666654
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.56 E-value=2.3e-14 Score=127.71 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
....+|||+||++++++++|+++|++||.|.+|+++.+.+ ++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~----g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~--- 355 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK----GVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKP--- 355 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC----CCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCce---
Confidence 4567899999999999999999999999999999998633 788999999999999999999999999999997
Q ss_pred CceEEEeecC
Q 030012 160 PTLKIQFAHF 169 (184)
Q Consensus 160 ~~l~V~~a~~ 169 (184)
|.|.||..
T Consensus 356 --l~V~~a~~ 363 (562)
T TIGR01628 356 --LYVALAQR 363 (562)
T ss_pred --eEEEeccC
Confidence 99999875
No 27
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2e-14 Score=114.53 Aligned_cols=81 Identities=16% Similarity=0.313 Sum_probs=74.0
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 76 PLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 76 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
+.....+++|||||++..+||++|++.|+.||.|.+||+.++ +||+||.|++.|+|..||..+|+.+|.|.
T Consensus 158 NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~---------qGYaFVrF~tkEaAahAIv~mNntei~G~ 228 (321)
T KOG0148|consen 158 NQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD---------QGYAFVRFETKEAAAHAIVQMNNTEIGGQ 228 (321)
T ss_pred ccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc---------cceEEEEecchhhHHHHHHHhcCceeCce
Confidence 335677899999999999999999999999999999999753 56999999999999999999999999999
Q ss_pred CCCCCceEEEeecCC
Q 030012 156 KPDSPTLKIQFAHFP 170 (184)
Q Consensus 156 ~~~~~~l~V~~a~~~ 170 (184)
- +++.|.|..
T Consensus 229 ~-----VkCsWGKe~ 238 (321)
T KOG0148|consen 229 L-----VRCSWGKEG 238 (321)
T ss_pred E-----EEEeccccC
Confidence 7 999999863
No 28
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.55 E-value=4.2e-14 Score=111.98 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
..+.+|||+||++.+||++|+++|+.||.|.+|+|+++ ++.++||||+|.+.++++.|+ .|+|..|.++.
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D------~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~--- 72 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS------GEYACTAYVTFKDAYALETAV-LLSGATIVDQR--- 72 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC------CCcceEEEEEECCHHHHHHHH-hcCCCeeCCce---
Confidence 34689999999999999999999999999999999875 344579999999999999999 69999999997
Q ss_pred CceEEEeecC
Q 030012 160 PTLKIQFAHF 169 (184)
Q Consensus 160 ~~l~V~~a~~ 169 (184)
|.|.-+..
T Consensus 73 --I~It~~~~ 80 (243)
T PLN03121 73 --VCITRWGQ 80 (243)
T ss_pred --EEEEeCcc
Confidence 88887654
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.55 E-value=2.4e-14 Score=127.68 Aligned_cols=77 Identities=25% Similarity=0.466 Sum_probs=71.7
Q ss_pred EEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceE
Q 030012 84 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLK 163 (184)
Q Consensus 84 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~ 163 (184)
+|||+|||.++||++|+++|++||.|.+|++.++.. +++++|||||+|.+.++|++|++.|++..+.|+. |+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~---t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~-----i~ 73 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSV---TRRSLGYGYVNFQNPADAERALETMNFKRLGGKP-----IR 73 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---CCCcceEEEEEECCHHHHHHHHHHhCCCEECCee-----EE
Confidence 799999999999999999999999999999988533 3688999999999999999999999999999987 99
Q ss_pred EEeec
Q 030012 164 IQFAH 168 (184)
Q Consensus 164 V~~a~ 168 (184)
|.|+.
T Consensus 74 i~~s~ 78 (562)
T TIGR01628 74 IMWSQ 78 (562)
T ss_pred eeccc
Confidence 99985
No 30
>PLN03213 repressor of silencing 3; Provisional
Probab=99.54 E-value=2.4e-14 Score=122.19 Aligned_cols=78 Identities=15% Similarity=0.353 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCH--HHHHHHHHHhcCCeeCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDP--KCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~--~~A~~Ai~~l~g~~~~g~~~ 157 (184)
....+||||||++.++++||+.+|..||.|.+|.|++. + | ||||||+|.+. .++.+||..|||.++.|+.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-T----G--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~- 79 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-K----G--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGR- 79 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-c----C--CceEEEEecCCcHHHHHHHHHHhcCCeecCce-
Confidence 44579999999999999999999999999999999832 1 4 89999999987 7899999999999999998
Q ss_pred CCCceEEEeecC
Q 030012 158 DSPTLKIQFAHF 169 (184)
Q Consensus 158 ~~~~l~V~~a~~ 169 (184)
|+|+-|+.
T Consensus 80 ----LKVNKAKP 87 (759)
T PLN03213 80 ----LRLEKAKE 87 (759)
T ss_pred ----eEEeeccH
Confidence 99999986
No 31
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.5e-15 Score=114.72 Aligned_cols=83 Identities=18% Similarity=0.412 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
..+.-|||||||++.||.||--+|++||+|++|.|++++ .+|+++||||+.|++..+..-|+..|||..|.||.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk---~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRt--- 106 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDK---KTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRT--- 106 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecC---CCCcccceEEEEecCccceEEEEeccCCceeccee---
Confidence 456789999999999999999999999999999999964 34899999999999999999999999999999998
Q ss_pred CceEEEeecCC
Q 030012 160 PTLKIQFAHFP 170 (184)
Q Consensus 160 ~~l~V~~a~~~ 170 (184)
|+|+...+.
T Consensus 107 --irVDHv~~Y 115 (219)
T KOG0126|consen 107 --IRVDHVSNY 115 (219)
T ss_pred --EEeeecccc
Confidence 999986543
No 32
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=6.6e-15 Score=114.34 Aligned_cols=89 Identities=19% Similarity=0.352 Sum_probs=80.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++||||+|..+++|.-|...|-+||.|++|.+..+ ...+++|||+||+|+..++|.+||+.||+.++.||.
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlD---yesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grt-- 81 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLD---YESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRT-- 81 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccc---hhcccccceeEEEeeccchhHHHhhcCchhhhccee--
Confidence 345689999999999999999999999999999999874 334789999999999999999999999999999998
Q ss_pred CCceEEEeecCCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~~ 175 (184)
|+|+||++++-+.+
T Consensus 82 ---irVN~AkP~kikeg 95 (298)
T KOG0111|consen 82 ---IRVNLAKPEKIKEG 95 (298)
T ss_pred ---EEEeecCCccccCC
Confidence 99999999876654
No 33
>smart00362 RRM_2 RNA recognition motif.
Probab=99.53 E-value=6.3e-14 Score=89.81 Aligned_cols=71 Identities=30% Similarity=0.570 Sum_probs=64.3
Q ss_pred EEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceE
Q 030012 84 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLK 163 (184)
Q Consensus 84 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~ 163 (184)
+|||+|||..+++++|+++|++||.+..+++...+ +.++|+|||+|.+.++|+.|++.+++..+.++. |+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~-----i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-----GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP-----LR 70 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE-----Ee
Confidence 58999999999999999999999999999887642 467889999999999999999999999999876 76
Q ss_pred E
Q 030012 164 I 164 (184)
Q Consensus 164 V 164 (184)
|
T Consensus 71 v 71 (72)
T smart00362 71 V 71 (72)
T ss_pred e
Confidence 5
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.52 E-value=7.3e-14 Score=123.98 Aligned_cols=76 Identities=25% Similarity=0.400 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCC--CCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPF--VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~--G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
...++|||+||++++++++|+++|++| |.|++|++++ +||||+|++.++|++|++.|||.+|.|+.
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-----------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~- 298 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-----------DYAFVHFEDREDAVKAMDELNGKELEGSE- 298 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-----------CeEEEEeCCHHHHHHHHHHhCCCEECCEE-
Confidence 345789999999999999999999999 9999997753 39999999999999999999999999998
Q ss_pred CCCceEEEeecCCC
Q 030012 158 DSPTLKIQFAHFPF 171 (184)
Q Consensus 158 ~~~~l~V~~a~~~~ 171 (184)
|+|+|++.+.
T Consensus 299 ----I~V~~Akp~~ 308 (578)
T TIGR01648 299 ----IEVTLAKPVD 308 (578)
T ss_pred ----EEEEEccCCC
Confidence 9999998643
No 35
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.52 E-value=7.7e-14 Score=121.26 Aligned_cols=82 Identities=21% Similarity=0.344 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||..+++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|+. |+|..+.|+.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d---~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~-- 159 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKD---RNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRP-- 159 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeec---CCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCee--
Confidence 345789999999999999999999999999999999984 3347899999999999999999996 9999999987
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
|.|+++..
T Consensus 160 ---i~v~~~~~ 167 (457)
T TIGR01622 160 ---IIVQSSQA 167 (457)
T ss_pred ---eEEeecch
Confidence 99988754
No 36
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1e-13 Score=110.13 Aligned_cols=85 Identities=22% Similarity=0.416 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
++....|.|.-||.++|+||++.+|...|+|++|++++++ ..|.+.||+||.|.++++|++|+..|||..+..++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDK---itGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KT-- 112 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDK---ITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKT-- 112 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeecc---ccccccccceeeecChHHHHHHHhhhcceeeccce--
Confidence 4555689999999999999999999999999999999954 45899999999999999999999999999999887
Q ss_pred CCceEEEeecCCC
Q 030012 159 SPTLKIQFAHFPF 171 (184)
Q Consensus 159 ~~~l~V~~a~~~~ 171 (184)
|+|.||++..
T Consensus 113 ---IKVSyARPSs 122 (360)
T KOG0145|consen 113 ---IKVSYARPSS 122 (360)
T ss_pred ---EEEEeccCCh
Confidence 9999998643
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=6.5e-14 Score=111.64 Aligned_cols=79 Identities=19% Similarity=0.364 Sum_probs=73.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCc
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 161 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~ 161 (184)
.-.+||+.|..+++.++|++.|.+||+|.+++++++. .++++|||+||.|.+.++|+.||..|||..|..|.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~---~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~----- 133 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM---NTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT----- 133 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecc---cCCcccceeEEeccchHHHHHHHHHhCCeeeccce-----
Confidence 4589999999999999999999999999999999964 34899999999999999999999999999999998
Q ss_pred eEEEeec
Q 030012 162 LKIQFAH 168 (184)
Q Consensus 162 l~V~~a~ 168 (184)
|+-+||.
T Consensus 134 IRTNWAT 140 (321)
T KOG0148|consen 134 IRTNWAT 140 (321)
T ss_pred eeccccc
Confidence 9999984
No 38
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.48 E-value=2.4e-13 Score=119.39 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=71.3
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 79 KGESNLLFVDGLPT-DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 79 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
..++++|||+||++ .+|+++|+++|+.||.|.+|+++.+ .+|||||+|.+.++|+.|++.|||..+.|+.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--------~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~- 342 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--------KKETALIEMADPYQAQLALTHLNGVKLFGKP- 342 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--------CCCEEEEEECCHHHHHHHHHHhCCCEECCce-
Confidence 34678999999998 6999999999999999999999863 2469999999999999999999999999997
Q ss_pred CCCceEEEeecCC
Q 030012 158 DSPTLKIQFAHFP 170 (184)
Q Consensus 158 ~~~~l~V~~a~~~ 170 (184)
|+|.+++..
T Consensus 343 ----l~v~~s~~~ 351 (481)
T TIGR01649 343 ----LRVCPSKQQ 351 (481)
T ss_pred ----EEEEEcccc
Confidence 999998653
No 39
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.48 E-value=8.2e-14 Score=119.70 Aligned_cols=82 Identities=22% Similarity=0.417 Sum_probs=76.9
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCce
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 162 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l 162 (184)
+.+||||+|++++|++|.++|+..|.|.+++++.+ +.+|+++||+|++|.+.++++.|++.|||+++.|++ |
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D---~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~-----l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYD---RETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRK-----L 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeeccc---ccCCCcCceeeEecCchhhHHHHHHhcCCcccCCce-----E
Confidence 89999999999999999999999999999999984 556999999999999999999999999999999998 9
Q ss_pred EEEeecCCCC
Q 030012 163 KIQFAHFPFH 172 (184)
Q Consensus 163 ~V~~a~~~~~ 172 (184)
+|.|+.+...
T Consensus 91 ~v~~~~~~~~ 100 (435)
T KOG0108|consen 91 RVNYASNRKN 100 (435)
T ss_pred Eeecccccch
Confidence 9999976443
No 40
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.48 E-value=2.1e-13 Score=108.12 Aligned_cols=80 Identities=29% Similarity=0.561 Sum_probs=74.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCc
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 161 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~ 161 (184)
.++|||+|||..+++++|+++|..||.|..+++..+. ..++++|||||+|.+.++|..|++.++|..+.|+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~---~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~----- 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDR---ETGKSRGFAFVEFESEESAEKAIEELNGKELEGRP----- 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecc---ccCccCceEEEEecCHHHHHHHHHHcCCCeECCce-----
Confidence 5999999999999999999999999999999998853 34789999999999999999999999999999998
Q ss_pred eEEEeecC
Q 030012 162 LKIQFAHF 169 (184)
Q Consensus 162 l~V~~a~~ 169 (184)
|+|.++..
T Consensus 187 ~~v~~~~~ 194 (306)
T COG0724 187 LRVQKAQP 194 (306)
T ss_pred eEeecccc
Confidence 99999753
No 41
>smart00360 RRM RNA recognition motif.
Probab=99.48 E-value=2.4e-13 Score=86.71 Aligned_cols=70 Identities=31% Similarity=0.584 Sum_probs=62.7
Q ss_pred EcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceEE
Q 030012 87 VDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKI 164 (184)
Q Consensus 87 VgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~V 164 (184)
|+|||..+++++|+++|++||.|..+.+.... ..++++|+|||+|.+.++|..|++.|++..+.++. |+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~---~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~-----~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDK---DTGKSKGFAFVEFESEEDAEKALEALNGKELDGRP-----LKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCC---CCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcE-----EEe
Confidence 57999999999999999999999999987743 23678899999999999999999999999998886 776
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.46 E-value=2.5e-13 Score=119.22 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHh--cCCeeCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL--HGYKFDDKKPD 158 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l--~g~~~~g~~~~ 158 (184)
++++|||+|||++++|++|+++|++||.|.+|+++. +++||||+|++.++|++|++.| ++..+.|+.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~-- 69 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---------GKRQALVEFEDEESAKACVNFATSVPIYIRGQP-- 69 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeE--
Confidence 468999999999999999999999999999999874 2469999999999999999875 789999997
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
|+|+|+..
T Consensus 70 ---l~v~~s~~ 77 (481)
T TIGR01649 70 ---AFFNYSTS 77 (481)
T ss_pred ---EEEEecCC
Confidence 99999864
No 43
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.46 E-value=7.3e-13 Score=85.23 Aligned_cols=74 Identities=31% Similarity=0.632 Sum_probs=66.3
Q ss_pred EEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceE
Q 030012 84 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLK 163 (184)
Q Consensus 84 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~ 163 (184)
+|||+|||..+++++|+++|+.||.|..+.+..... ..++|+|||+|.+.++|+.|++.+++..+.+++ +.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~----~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~-----~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD----TKSKGFAFVEFEDEEDAEKALEALNGKELGGRP-----LR 71 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC----CCcceEEEEEECCHHHHHHHHHHhCCCeECCeE-----EE
Confidence 489999999999999999999999999999886432 256789999999999999999999999999987 88
Q ss_pred EEe
Q 030012 164 IQF 166 (184)
Q Consensus 164 V~~ 166 (184)
|.|
T Consensus 72 v~~ 74 (74)
T cd00590 72 VEF 74 (74)
T ss_pred EeC
Confidence 865
No 44
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=3.9e-13 Score=113.39 Aligned_cols=82 Identities=22% Similarity=0.303 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
...++.||||.||.++.|+||..+|++.|.|-++||+.+ +.+|.+||||||+|.+.++|++|++.||+++|.-.+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD---~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK-- 154 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMD---PFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK-- 154 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeec---ccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC--
Confidence 366889999999999999999999999999999999984 445899999999999999999999999999997554
Q ss_pred CCceEEEee
Q 030012 159 SPTLKIQFA 167 (184)
Q Consensus 159 ~~~l~V~~a 167 (184)
.|.|..+
T Consensus 155 --~igvc~S 161 (506)
T KOG0117|consen 155 --LLGVCVS 161 (506)
T ss_pred --EeEEEEe
Confidence 4776654
No 45
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.3e-12 Score=102.58 Aligned_cols=84 Identities=25% Similarity=0.422 Sum_probs=76.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....+.|||-||.+++.|.-|.++|.+||.|.+|+++++-+ +.+.|||+||+..+.++|..||..|||+.+.++.
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~t---tnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rv- 349 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFT---TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV- 349 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCC---cccccceeEEEecchHHHHHHHHHhcCccccceE-
Confidence 445578999999999999999999999999999999999643 3678999999999999999999999999999997
Q ss_pred CCCceEEEeecC
Q 030012 158 DSPTLKIQFAHF 169 (184)
Q Consensus 158 ~~~~l~V~~a~~ 169 (184)
|.|.|..+
T Consensus 350 ----LQVsFKtn 357 (360)
T KOG0145|consen 350 ----LQVSFKTN 357 (360)
T ss_pred ----EEEEEecC
Confidence 99999754
No 46
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.42 E-value=2.7e-13 Score=109.11 Aligned_cols=76 Identities=24% Similarity=0.459 Sum_probs=69.7
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCce
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 162 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l 162 (184)
.+|||||||.++++.+|+.+|++||.|++|.|++. |+||..++...|+.||..|||++++|.. |
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----------YgFVHiEdktaaedairNLhgYtLhg~n-----I 66 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----------YGFVHIEDKTAAEDAIRNLHGYTLHGVN-----I 66 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-----------cceEEeecccccHHHHhhcccceecceE-----E
Confidence 47999999999999999999999999999999863 9999999999999999999999999997 9
Q ss_pred EEEeecCCCCCC
Q 030012 163 KIQFAHFPFHLP 174 (184)
Q Consensus 163 ~V~~a~~~~~~~ 174 (184)
+|+-+++....+
T Consensus 67 nVeaSksKsk~s 78 (346)
T KOG0109|consen 67 NVEASKSKSKAS 78 (346)
T ss_pred EEEeccccCCCc
Confidence 999888764333
No 47
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.42 E-value=2.5e-13 Score=102.70 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
.+...||||+||+..++++.|.++|-+.|.|+++++.++ +-....+||||++|.++++|+-|++.||..++.|+.
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkD---rv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrp-- 80 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKD---RVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRP-- 80 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchh---hhcccccceeEEEEechhhhHHHHHHHHHHHhcCce--
Confidence 456789999999999999999999999999999999885 333578999999999999999999999999999996
Q ss_pred CCceEEEeec
Q 030012 159 SPTLKIQFAH 168 (184)
Q Consensus 159 ~~~l~V~~a~ 168 (184)
|+|.-+.
T Consensus 81 ---Irv~kas 87 (203)
T KOG0131|consen 81 ---IRVNKAS 87 (203)
T ss_pred ---eEEEecc
Confidence 9999886
No 48
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=5.1e-13 Score=112.73 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
.-+.|||.||+.++|||.|+++|++||.|..|+.+++ ||||.|.++++|-+||+.+||++|+|..
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----------YaFVHf~eR~davkAm~~~ngkeldG~~---- 322 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----------YAFVHFAEREDAVKAMKETNGKELDGSP---- 322 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----------eeEEeecchHHHHHHHHHhcCceecCce----
Confidence 3478999999999999999999999999999877653 9999999999999999999999999996
Q ss_pred ceEEEeecCCCCCCC
Q 030012 161 TLKIQFAHFPFHLPS 175 (184)
Q Consensus 161 ~l~V~~a~~~~~~~~ 175 (184)
|.|.+|+++-.++.
T Consensus 323 -iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 323 -IEVTLAKPVDKKKK 336 (506)
T ss_pred -EEEEecCChhhhcc
Confidence 99999998654443
No 49
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.8e-12 Score=111.78 Aligned_cols=79 Identities=24% Similarity=0.454 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
+.++|.|.||||.+.+.+|+.+|+.||.|++|.|.+. .+|+.+|||||.|.+..+|..|++.||+.+|+||.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k----~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~---- 187 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK----KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRP---- 187 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC----CCCCccceEEEEEeeHHHHHHHHHhccCceecCce----
Confidence 4679999999999999999999999999999999853 34677899999999999999999999999999997
Q ss_pred ceEEEeec
Q 030012 161 TLKIQFAH 168 (184)
Q Consensus 161 ~l~V~~a~ 168 (184)
|-|+||-
T Consensus 188 -VAVDWAV 194 (678)
T KOG0127|consen 188 -VAVDWAV 194 (678)
T ss_pred -eEEeeec
Confidence 9999985
No 50
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.5e-12 Score=103.93 Aligned_cols=86 Identities=28% Similarity=0.398 Sum_probs=74.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
..++||||-|...-.|||++.+|..||.|.+|.+.+.. +|.+|||+||.|.+..+|+.||..|||....... +.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~----dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGA--SS 91 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP----DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGA--SS 91 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC----CCCCCCceEEEeccchHHHHHHHHhcccccCCCC--cc
Confidence 56899999999999999999999999999999998643 3789999999999999999999999995544333 45
Q ss_pred ceEEEeecCCCC
Q 030012 161 TLKIQFAHFPFH 172 (184)
Q Consensus 161 ~l~V~~a~~~~~ 172 (184)
.|.|.|+...+.
T Consensus 92 SLVVK~ADTdkE 103 (371)
T KOG0146|consen 92 SLVVKFADTDKE 103 (371)
T ss_pred ceEEEeccchHH
Confidence 699999976553
No 51
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.35 E-value=2e-12 Score=97.84 Aligned_cols=109 Identities=11% Similarity=0.210 Sum_probs=89.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEE-EEeecCCCCCCCCcceEEEEEECCHHHH
Q 030012 62 INGVPSSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREI-RVIHKEPRRTGDRAMVLCFVEFDDPKCA 140 (184)
Q Consensus 62 ~~~~p~~~~~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v-~l~~~~~~~~~g~~~G~afV~F~~~~~A 140 (184)
+-++|+.+..........+.+.+|||+||.++++|..|.+.|+.||.+.+. ++++++ .+|.++||+||.|.+.+.+
T Consensus 76 LYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~---~tg~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 76 LYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDP---DTGNPKGFGFINYASFEAS 152 (203)
T ss_pred hcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccc---cCCCCCCCeEEechhHHHH
Confidence 456788777766555567778999999999999999999999999998763 555543 2378899999999999999
Q ss_pred HHHHHHhcCCeeCCCCCCCCceEEEeecCCCCCCCCCCC
Q 030012 141 RTAMDALHGYKFDDKKPDSPTLKIQFAHFPFHLPSDGDE 179 (184)
Q Consensus 141 ~~Ai~~l~g~~~~g~~~~~~~l~V~~a~~~~~~~~~~~~ 179 (184)
.+|+..++|+.+..+. +.|.|+.....+. .+++
T Consensus 153 d~ai~s~ngq~l~nr~-----itv~ya~k~~~kg-~~~g 185 (203)
T KOG0131|consen 153 DAAIGSMNGQYLCNRP-----ITVSYAFKKDTKG-ERHG 185 (203)
T ss_pred HHHHHHhccchhcCCc-----eEEEEEEecCCCc-ccCC
Confidence 9999999999999997 9999997665555 4543
No 52
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=9.1e-13 Score=109.07 Aligned_cols=79 Identities=16% Similarity=0.364 Sum_probs=73.0
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCce
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 162 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l 162 (184)
++||||.+.+++.||.|+..|..||.|+++.+.++. .+++++|||||+|+-++.|+-|++.|||..++||. |
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp---~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRN-----i 185 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDP---ATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN-----I 185 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeeccccc---ccccccceEEEEEeCcHHHHHHHHHhccccccCcc-----c
Confidence 789999999999999999999999999999998853 45899999999999999999999999999999998 9
Q ss_pred EEEeecC
Q 030012 163 KIQFAHF 169 (184)
Q Consensus 163 ~V~~a~~ 169 (184)
+|....+
T Consensus 186 KVgrPsN 192 (544)
T KOG0124|consen 186 KVGRPSN 192 (544)
T ss_pred cccCCCC
Confidence 9885544
No 53
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=4.5e-12 Score=104.13 Aligned_cols=106 Identities=20% Similarity=0.322 Sum_probs=85.5
Q ss_pred CCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcc
Q 030012 48 RDIAPGINPTIPDVINGVPSSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAM 127 (184)
Q Consensus 48 ~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~ 127 (184)
++...|.+.++...+-.+...... ..|+++....+|||++|-..++|.+|++.|.+||+|+++++... +
T Consensus 196 ~dryyg~ndPva~kil~ra~~~~~--lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---------~ 264 (377)
T KOG0153|consen 196 KDRYYGLNDPVALKILNRAGSAGT--LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---------K 264 (377)
T ss_pred ccccccccChHHHHHHhhcccccc--cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---------c
Confidence 566677777666555455554444 44456677789999999999999999999999999999998752 3
Q ss_pred eEEEEEECCHHHHHHHHHH-hcCCeeCCCCCCCCceEEEeecC
Q 030012 128 VLCFVEFDDPKCARTAMDA-LHGYKFDDKKPDSPTLKIQFAHF 169 (184)
Q Consensus 128 G~afV~F~~~~~A~~Ai~~-l~g~~~~g~~~~~~~l~V~~a~~ 169 (184)
+||||+|.+.++|+.|.+. ++-..|+|++ |+|.|++.
T Consensus 265 ~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R-----l~i~Wg~~ 302 (377)
T KOG0153|consen 265 GCAFVTFTTREAAEKAAEKSFNKLVINGFR-----LKIKWGRP 302 (377)
T ss_pred ccceeeehhhHHHHHHHHhhcceeeecceE-----EEEEeCCC
Confidence 4999999999999998764 4778889998 99999987
No 54
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.33 E-value=8.4e-12 Score=77.97 Aligned_cols=56 Identities=30% Similarity=0.592 Sum_probs=49.7
Q ss_pred HHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceEEEee
Q 030012 99 VSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167 (184)
Q Consensus 99 L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~V~~a 167 (184)
|+++|++||.|.++.+..+. +++|||+|.+.++|+.|++.|||..+.|+. |+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~-----l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--------RGFAFVEFASVEDAQKAIEQLNGRQFNGRP-----LKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--------TTEEEEEESSHHHHHHHHHHHTTSEETTEE-----EEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEECCcE-----EEEEEC
Confidence 67899999999999987532 369999999999999999999999999997 999996
No 55
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.31 E-value=9.1e-12 Score=97.15 Aligned_cols=82 Identities=24% Similarity=0.430 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHH----hhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSH----LFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 154 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~----~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g 154 (184)
..++.||||.||+..+..++|++ +|++||.|++|..... .+.+|-|||.|.+.+.|-.|+..|+|+-+.|
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt------~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg 79 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT------PKMRGQAFVVFKETEAASAALRALQGFPFYG 79 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC------CCccCceEEEecChhHHHHHHHHhcCCcccC
Confidence 34556999999999999999988 9999999999987642 5788999999999999999999999999999
Q ss_pred CCCCCCceEEEeecCCC
Q 030012 155 KKPDSPTLKIQFAHFPF 171 (184)
Q Consensus 155 ~~~~~~~l~V~~a~~~~ 171 (184)
.. ++|+||++..
T Consensus 80 K~-----mriqyA~s~s 91 (221)
T KOG4206|consen 80 KP-----MRIQYAKSDS 91 (221)
T ss_pred ch-----hheecccCcc
Confidence 86 9999998754
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1e-11 Score=107.27 Aligned_cols=83 Identities=24% Similarity=0.390 Sum_probs=73.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHh-----cC-Ce
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL-----HG-YK 151 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l-----~g-~~ 151 (184)
......+|||.|||+++||++|++.|++||.|.++.|+.+ +.+++++|+|||.|.+..+|++||+.. .| +.
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~---k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~l 364 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKD---KDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVL 364 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEec---cCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEE
Confidence 3455689999999999999999999999999999999884 445899999999999999999999877 34 88
Q ss_pred eCCCCCCCCceEEEeec
Q 030012 152 FDDKKPDSPTLKIQFAH 168 (184)
Q Consensus 152 ~~g~~~~~~~l~V~~a~ 168 (184)
++||. |+|..|-
T Consensus 365 l~GR~-----Lkv~~Av 376 (678)
T KOG0127|consen 365 LDGRL-----LKVTLAV 376 (678)
T ss_pred EeccE-----Eeeeecc
Confidence 89987 9998874
No 57
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=2.1e-11 Score=79.82 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=50.6
Q ss_pred HHHHHHhhc----CCCCEEEEE-EeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 96 RREVSHLFR----PFVGYREIR-VIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 96 e~~L~~~F~----~~G~i~~v~-l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
+++|+++|+ +||.|.++. ++.+... ..++++||+||+|.+.++|++|++.|||..+.|+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~-~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVG-YENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCC-CCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 578999998 999999995 5443221 12678999999999999999999999999999986
No 58
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=5.9e-12 Score=100.55 Aligned_cols=84 Identities=29% Similarity=0.510 Sum_probs=76.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
+.+++++|||-.||.+..+.||..+|..||.|++.++..+ +.+..+|.|+||.|++..+|+.||..|||+.|.-++
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvD---RATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKR- 356 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVD---RATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR- 356 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeeh---hccccccceeeEecCCchhHHHHHHHhcchhhhhhh-
Confidence 4567899999999999999999999999999999988774 445788999999999999999999999999999988
Q ss_pred CCCceEEEeecC
Q 030012 158 DSPTLKIQFAHF 169 (184)
Q Consensus 158 ~~~~l~V~~a~~ 169 (184)
|+|+..+.
T Consensus 357 ----LKVQLKRP 364 (371)
T KOG0146|consen 357 ----LKVQLKRP 364 (371)
T ss_pred ----hhhhhcCc
Confidence 99998765
No 59
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.25 E-value=1.9e-11 Score=107.66 Aligned_cols=76 Identities=24% Similarity=0.425 Sum_probs=62.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCC------------CCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHH
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPF------------VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMD 145 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~------------G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~ 145 (184)
.....++|||+|||+.+|+++|+++|..+ +.|..+.+ .+.+|||||+|.+.++|+.||
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---------~~~kg~afVeF~~~e~A~~Al- 240 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---------NKEKNFAFLEFRTVEEATFAM- 240 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---------CCCCCEEEEEeCCHHHHhhhh-
Confidence 35567899999999999999999999874 23444433 345689999999999999999
Q ss_pred HhcCCeeCCCCCCCCceEEEeec
Q 030012 146 ALHGYKFDDKKPDSPTLKIQFAH 168 (184)
Q Consensus 146 ~l~g~~~~g~~~~~~~l~V~~a~ 168 (184)
.|+|..+.|+. |+|...+
T Consensus 241 ~l~g~~~~g~~-----l~v~r~~ 258 (509)
T TIGR01642 241 ALDSIIYSNVF-----LKIRRPH 258 (509)
T ss_pred cCCCeEeeCce-----eEecCcc
Confidence 59999999986 9987654
No 60
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.24 E-value=2.4e-11 Score=102.65 Aligned_cols=80 Identities=21% Similarity=0.419 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhc-CCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFR-PFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
..+.+||.|||++..+++|+++|. +-|+|..|.|+.++. |++||||.|||++++.+++|++.||-+++.||.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~----GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~--- 115 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES----GKARGCAVVEFKDPENVQKALEKLNKYEVNGRE--- 115 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC----CCcCCceEEEeeCHHHHHHHHHHhhhccccCce---
Confidence 345699999999999999999996 579999999998765 789999999999999999999999999999997
Q ss_pred CceEEEeecC
Q 030012 160 PTLKIQFAHF 169 (184)
Q Consensus 160 ~~l~V~~a~~ 169 (184)
|+|.-.+.
T Consensus 116 --l~vKEd~d 123 (608)
T KOG4212|consen 116 --LVVKEDHD 123 (608)
T ss_pred --EEEeccCc
Confidence 98876654
No 61
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.23 E-value=1.2e-11 Score=106.65 Aligned_cols=76 Identities=21% Similarity=0.438 Sum_probs=69.4
Q ss_pred EEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceE
Q 030012 84 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLK 163 (184)
Q Consensus 84 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~ 163 (184)
.||||||.++++|++|+.+|+.||.|..|.+..+.. +|.++||+||+|.+.++|.+|++.|||+++.|+. |+
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~---tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~-----ik 351 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSE---TGRSKGFGFITFVNKEDARKALEQLNGFELAGRL-----IK 351 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccc---cccccCcceEEEecHHHHHHHHHHhccceecCce-----EE
Confidence 399999999999999999999999999999987532 3899999999999999999999999999999997 88
Q ss_pred EEee
Q 030012 164 IQFA 167 (184)
Q Consensus 164 V~~a 167 (184)
|..-
T Consensus 352 V~~v 355 (549)
T KOG0147|consen 352 VSVV 355 (549)
T ss_pred EEEe
Confidence 7654
No 62
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.22 E-value=2.5e-11 Score=108.29 Aligned_cols=79 Identities=27% Similarity=0.373 Sum_probs=73.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCc
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 161 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~ 161 (184)
++|||||+|+..++|.||+.+|+.||+|.+|.++. ++|||||......+|++|+..|+.+.+.++.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~----- 486 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---------PRGCAFIKMVRRQDAEKALQKLSNVKVADKT----- 486 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc---------CCceeEEEEeehhHHHHHHHHHhccccccee-----
Confidence 57999999999999999999999999999999863 4679999999999999999999999999997
Q ss_pred eEEEeecCCCCCC
Q 030012 162 LKIQFAHFPFHLP 174 (184)
Q Consensus 162 l~V~~a~~~~~~~ 174 (184)
|+|.||.+.+-+.
T Consensus 487 Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 487 IKIAWAVGKGPKS 499 (894)
T ss_pred eEEeeeccCCcch
Confidence 9999998877665
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=6e-11 Score=100.80 Aligned_cols=74 Identities=20% Similarity=0.381 Sum_probs=67.9
Q ss_pred EEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceEE
Q 030012 85 LFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKI 164 (184)
Q Consensus 85 lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~V 164 (184)
|||.||++.++.++|.++|+.||+|++|++..++. | ++|| ||+|+++++|++|++.+||..+.+.+ |.|
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~----g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kk-----i~v 147 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN----G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKK-----IYV 147 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC----C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCe-----eEE
Confidence 99999999999999999999999999999998654 3 8999 99999999999999999999999987 877
Q ss_pred EeecC
Q 030012 165 QFAHF 169 (184)
Q Consensus 165 ~~a~~ 169 (184)
.....
T Consensus 148 g~~~~ 152 (369)
T KOG0123|consen 148 GLFER 152 (369)
T ss_pred eeccc
Confidence 66543
No 64
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.17 E-value=9.3e-10 Score=86.03 Aligned_cols=87 Identities=34% Similarity=0.565 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
.+.-+||||.+||.++...||..+|..|-..+.+.|... .+.+.-.+-++|++|.+..+|+.|+..|||..|+-..
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~T--sk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~-- 106 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYT--SKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPET-- 106 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeec--cCCCccccceEEEEecchHHHHHHHHHhcCeeecccc--
Confidence 355789999999999999999999999977777766442 2222234569999999999999999999999999876
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
..+|++++||.
T Consensus 107 ~stLhiElAKS 117 (284)
T KOG1457|consen 107 GSTLHIELAKS 117 (284)
T ss_pred CceeEeeehhc
Confidence 67799999985
No 65
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=2.8e-11 Score=107.12 Aligned_cols=81 Identities=27% Similarity=0.472 Sum_probs=74.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
..++|.|.|||+.++..+++++|..||.+++|+|... .++ +.++|||||+|-+..+|.+|+++|.+..+.||+
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-~~k--~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRr---- 684 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-IGK--GAHRGFGFVDFLTPREAKNAFDALGSTHLYGRR---- 684 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchh-hcc--hhhccceeeeccCcHHHHHHHHhhcccceechh----
Confidence 3679999999999999999999999999999999875 222 568999999999999999999999999999999
Q ss_pred ceEEEeecC
Q 030012 161 TLKIQFAHF 169 (184)
Q Consensus 161 ~l~V~~a~~ 169 (184)
|.++||+.
T Consensus 685 -LVLEwA~~ 692 (725)
T KOG0110|consen 685 -LVLEWAKS 692 (725)
T ss_pred -hheehhcc
Confidence 99999976
No 66
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=5.1e-11 Score=98.39 Aligned_cols=83 Identities=23% Similarity=0.401 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
.++.+.|||-.|.+-++.+||.-+|+.||.|++|.++++ +.+|.+.-||||+|++.++.++|.-.|++..|++++
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD---~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR-- 310 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRD---RKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR-- 310 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEec---ccccchhheeeeeecchhhHHHHHhhhcceeeccce--
Confidence 456789999999999999999999999999999999995 344789999999999999999999999999999999
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
|.|+|+.+
T Consensus 311 ---IHVDFSQS 318 (479)
T KOG0415|consen 311 ---IHVDFSQS 318 (479)
T ss_pred ---EEeehhhh
Confidence 99999864
No 67
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.16 E-value=1.4e-10 Score=89.51 Aligned_cols=85 Identities=19% Similarity=0.358 Sum_probs=73.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCC-CCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPF-VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~-G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
......-+||..+|..+.+.++..+|.+| |.+..+++.+ ++.+|.++|||||+|++.+.|+-|.+.||++.+.++-
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsR---nkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~l 121 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSR---NKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHL 121 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeec---ccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhe
Confidence 34556689999999999999999999998 6677777766 4455899999999999999999999999999999997
Q ss_pred CCCCceEEEeecCC
Q 030012 157 PDSPTLKIQFAHFP 170 (184)
Q Consensus 157 ~~~~~l~V~~a~~~ 170 (184)
|.|.+-...
T Consensus 122 -----L~c~vmppe 130 (214)
T KOG4208|consen 122 -----LECHVMPPE 130 (214)
T ss_pred -----eeeEEeCch
Confidence 999987654
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.12 E-value=9.8e-11 Score=94.48 Aligned_cols=74 Identities=24% Similarity=0.430 Sum_probs=69.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
..+.+|+||||.+.++.+||+..|++||.|++|+|+++ |+||.|+-.++|..|++.||+.++.|++
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-----------y~fvh~d~~eda~~air~l~~~~~~gk~--- 141 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-----------YAFVHFDRAEDAVEAIRGLDNTEFQGKR--- 141 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----------eeEEEEeeccchHHHHhcccccccccce---
Confidence 45679999999999999999999999999999999863 9999999999999999999999999998
Q ss_pred CceEEEeecC
Q 030012 160 PTLKIQFAHF 169 (184)
Q Consensus 160 ~~l~V~~a~~ 169 (184)
++|+.+.+
T Consensus 142 --m~vq~sts 149 (346)
T KOG0109|consen 142 --MHVQLSTS 149 (346)
T ss_pred --eeeeeecc
Confidence 99999854
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.11 E-value=4.8e-10 Score=94.89 Aligned_cols=76 Identities=18% Similarity=0.322 Sum_probs=68.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||.|||+++|++.|++-|..||.|....|+.. |+++| .|.|.++++|+.|+..|+|.++.|+.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~------GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~-- 602 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN------GKSKG--VVRFFSPEDAERACALMNGSRLDGRN-- 602 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc------CCccc--eEEecCHHHHHHHHHHhccCcccCce--
Confidence 456788999999999999999999999999999988542 67777 89999999999999999999999998
Q ss_pred CCceEEEee
Q 030012 159 SPTLKIQFA 167 (184)
Q Consensus 159 ~~~l~V~~a 167 (184)
|+|+|.
T Consensus 603 ---I~V~y~ 608 (608)
T KOG4212|consen 603 ---IKVTYF 608 (608)
T ss_pred ---eeeeeC
Confidence 999884
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=2.7e-10 Score=94.59 Aligned_cols=81 Identities=14% Similarity=0.294 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
.-++|||..+.++.+|+||+.+|+.||+|++|.+.+. .+++.+|||+|++|.+..+...|+..||=+.++|+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~---pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQy---- 281 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA---PTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQY---- 281 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeecc---CCCCCccceeeEEeccccchHHHhhhcchhhcccce----
Confidence 3479999999999999999999999999999999884 445679999999999999999999999999999997
Q ss_pred ceEEEeecC
Q 030012 161 TLKIQFAHF 169 (184)
Q Consensus 161 ~l~V~~a~~ 169 (184)
|+|--.-.
T Consensus 282 -LRVGk~vT 289 (544)
T KOG0124|consen 282 -LRVGKCVT 289 (544)
T ss_pred -EecccccC
Confidence 88876543
No 71
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=7.2e-10 Score=98.32 Aligned_cols=80 Identities=30% Similarity=0.429 Sum_probs=70.7
Q ss_pred EEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceE
Q 030012 84 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLK 163 (184)
Q Consensus 84 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~ 163 (184)
+|||.||++++|.++|..+|...|.|.++.|.........-.+.||+||+|.+.++|+.|++.|+|..++|+. |.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~-----l~ 591 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHK-----LE 591 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCce-----EE
Confidence 4999999999999999999999999999988764332212346799999999999999999999999999998 99
Q ss_pred EEeec
Q 030012 164 IQFAH 168 (184)
Q Consensus 164 V~~a~ 168 (184)
|.++.
T Consensus 592 lk~S~ 596 (725)
T KOG0110|consen 592 LKISE 596 (725)
T ss_pred EEecc
Confidence 99998
No 72
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.93 E-value=3e-09 Score=92.71 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
-+++|||.+|+..+...||+.+|++||.|+-.+++..-.. .-.+.|+||++.+.++|.+||+.||-.+++|+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRs---PGaRCYGfVTMSts~eAtkCI~hLHrTELHGrm---- 476 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARS---PGARCYGFVTMSTSAEATKCIEHLHRTELHGRM---- 476 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCC---CCcceeEEEEecchHHHHHHHHHhhhhhhccee----
Confidence 3578999999999999999999999999999999875322 235679999999999999999999999999998
Q ss_pred ceEEEeecCC
Q 030012 161 TLKIQFAHFP 170 (184)
Q Consensus 161 ~l~V~~a~~~ 170 (184)
|.|+-+++.
T Consensus 477 -ISVEkaKNE 485 (940)
T KOG4661|consen 477 -ISVEKAKNE 485 (940)
T ss_pred -eeeeecccC
Confidence 999999873
No 73
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.88 E-value=2e-09 Score=89.21 Aligned_cols=72 Identities=25% Similarity=0.422 Sum_probs=62.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
...+|||++|+|+++++.|++.|.+||+|.+|.++++. ..++++||+||+|++.+...+++.. .-.+|+++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~---~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ 76 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDP---STGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRS 76 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccC---CCCCcccccceecCCCcchheeecc-cccccCCcc
Confidence 67899999999999999999999999999999999854 3489999999999999998888753 345666665
No 74
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=2e-09 Score=84.48 Aligned_cols=72 Identities=24% Similarity=0.439 Sum_probs=66.4
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCce
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 162 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l 162 (184)
..+||++||+.+.+.+|+++|..||.+.++.+.. ||+||+|++..+|+.|+..||+.++.+.+ +
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-----------gf~fv~fed~rda~Dav~~l~~~~l~~e~-----~ 65 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-----------GFGFVEFEDPRDADDAVHDLDGKELCGER-----L 65 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-----------ccceeccCchhhhhcccchhcCceeccee-----e
Confidence 3689999999999999999999999999998753 49999999999999999999999999987 9
Q ss_pred EEEeecCC
Q 030012 163 KIQFAHFP 170 (184)
Q Consensus 163 ~V~~a~~~ 170 (184)
.|+|++..
T Consensus 66 vve~~r~~ 73 (216)
T KOG0106|consen 66 VVEHARGK 73 (216)
T ss_pred eeeccccc
Confidence 99999853
No 75
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.84 E-value=1e-08 Score=84.57 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEE--------EEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCe
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--------IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYK 151 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--------v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~ 151 (184)
..+..|||.|||.++|-+++.++|++||-|.. |+|.+++. |+.+|=|++.|-..++++-|++.|++..
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~----G~lKGDaLc~y~K~ESVeLA~~ilDe~~ 207 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ----GKLKGDALCCYIKRESVELAIKILDEDE 207 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC----CCccCceEEEeecccHHHHHHHHhCccc
Confidence 44667999999999999999999999998864 77877543 7899999999999999999999999999
Q ss_pred eCCCCCCCCceEEEeecC
Q 030012 152 FDDKKPDSPTLKIQFAHF 169 (184)
Q Consensus 152 ~~g~~~~~~~l~V~~a~~ 169 (184)
+.|++ |+|+.|+.
T Consensus 208 ~rg~~-----~rVerAkf 220 (382)
T KOG1548|consen 208 LRGKK-----LRVERAKF 220 (382)
T ss_pred ccCcE-----EEEehhhh
Confidence 99998 99999975
No 76
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.83 E-value=1.5e-08 Score=81.20 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
....+|+|.||+..++++||+++|..||.+..+-+-.++. |.+.|.|-|.|...++|+.|++.|||..++|+.
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~----G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~--- 153 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA----GRSLGTADVSFNRRDDAERAVKKYNGVALDGRP--- 153 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC----CCCCccceeeecchHhHHHHHHHhcCcccCCce---
Confidence 3447899999999999999999999999888777766544 788999999999999999999999999999986
Q ss_pred CceEEEeecCC
Q 030012 160 PTLKIQFAHFP 170 (184)
Q Consensus 160 ~~l~V~~a~~~ 170 (184)
+++.....+
T Consensus 154 --mk~~~i~~~ 162 (243)
T KOG0533|consen 154 --MKIEIISSP 162 (243)
T ss_pred --eeeEEecCc
Confidence 887776543
No 77
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.8e-08 Score=85.80 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=66.2
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCce
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 162 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l 162 (184)
..|||| +++||.+|.++|+.+|.++++++.++. + +.|||||.|.+..+|++||+.||-..+.|+. +
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~----t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~-----~ 67 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA----T--SLGYAYVNFQQPADAERALDTMNFDVLKGKP-----I 67 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC----C--ccceEEEecCCHHHHHHHHHHcCCcccCCcE-----E
Confidence 468999 899999999999999999999999853 2 7899999999999999999999999999997 9
Q ss_pred EEEeec
Q 030012 163 KIQFAH 168 (184)
Q Consensus 163 ~V~~a~ 168 (184)
++-|+.
T Consensus 68 rim~s~ 73 (369)
T KOG0123|consen 68 RIMWSQ 73 (369)
T ss_pred Eeehhc
Confidence 999974
No 78
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=1.1e-08 Score=88.89 Aligned_cols=70 Identities=27% Similarity=0.365 Sum_probs=62.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
.-...+|+|-|||..+++++|.++|+.||+|+.++... ..+|.+||+|.|..+|++|+++|++.++.|++
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~--------~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP--------NKRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc--------ccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 44567999999999999999999999999999976543 33569999999999999999999999999987
No 79
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.75 E-value=4.1e-08 Score=78.48 Aligned_cols=82 Identities=13% Similarity=0.220 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
......+||+|+.+.+|.++++..|+.||.+..+.+..+ +..++++||+||+|.+.+.++.++. |||..+.++.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d---~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~-- 171 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKD---KFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPA-- 171 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeecc---ccCCCcceeEEEecccHhhhHHHhh-cCCccccccc--
Confidence 445679999999999999999999999999988888774 4457899999999999999999998 9999999998
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
+.|.+.+.
T Consensus 172 ---i~vt~~r~ 179 (231)
T KOG4209|consen 172 ---IEVTLKRT 179 (231)
T ss_pred ---ceeeeeee
Confidence 88888763
No 80
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.71 E-value=3.3e-08 Score=84.89 Aligned_cols=80 Identities=24% Similarity=0.423 Sum_probs=65.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
...+|||.|||.++++++|+++|..||.|+..+|.... .+++...|+||+|++.++++.|+++- -..+++++
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~---~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~k---- 358 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS---PGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRK---- 358 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEec---cCCCcCceEEEEEeecchhhhhhhcC-ccccCCee----
Confidence 34569999999999999999999999999998887643 22444489999999999999999754 67777777
Q ss_pred ceEEEeecC
Q 030012 161 TLKIQFAHF 169 (184)
Q Consensus 161 ~l~V~~a~~ 169 (184)
|.|+--+.
T Consensus 359 -l~Veek~~ 366 (419)
T KOG0116|consen 359 -LNVEEKRP 366 (419)
T ss_pred -EEEEeccc
Confidence 88876654
No 81
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.70 E-value=5.6e-08 Score=86.59 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
++..++|||+||++.++|+.|...|..||.|.++++++..+....-+.+-|+||-|-+..+|++|++.|+|..+....
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e-- 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE-- 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee--
Confidence 345678999999999999999999999999999998873221111234569999999999999999999999999998
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
+++-|++.
T Consensus 249 ---~K~gWgk~ 256 (877)
T KOG0151|consen 249 ---MKLGWGKA 256 (877)
T ss_pred ---eeeccccc
Confidence 99999964
No 82
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.68 E-value=7.6e-09 Score=80.72 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=69.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....+||||+|+...++|+-|.++|-+.|.|..|.|...+. ++.+ ||||+|.++.+..-|++.+||..+.++.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d----~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e-- 78 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD----QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDE-- 78 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc----CCCc-eeeeecccccchhhhhhhcccchhccch--
Confidence 35568999999999999999999999999999999876433 4555 9999999999999999999999999986
Q ss_pred CCceEEEeec
Q 030012 159 SPTLKIQFAH 168 (184)
Q Consensus 159 ~~~l~V~~a~ 168 (184)
++|++-.
T Consensus 79 ---~q~~~r~ 85 (267)
T KOG4454|consen 79 ---EQRTLRC 85 (267)
T ss_pred ---hhccccc
Confidence 7777643
No 83
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.65 E-value=7.3e-08 Score=79.96 Aligned_cols=80 Identities=24% Similarity=0.370 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
..++|||++||.++++++++++|.+||.|..+.++.+. ...+++||+||+|.+++++++++. ..-..|.++.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~---~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~---- 167 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDK---TTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKK---- 167 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecc---cccccccceeeEeccccccceecc-cceeeecCce----
Confidence 35699999999999999999999999988888887753 336899999999999999999974 5667888876
Q ss_pred ceEEEeecC
Q 030012 161 TLKIQFAHF 169 (184)
Q Consensus 161 ~l~V~~a~~ 169 (184)
+.|.-|.+
T Consensus 168 -vevkrA~p 175 (311)
T KOG4205|consen 168 -VEVKRAIP 175 (311)
T ss_pred -eeEeeccc
Confidence 77777753
No 84
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.52 E-value=8.2e-08 Score=75.24 Aligned_cols=70 Identities=23% Similarity=0.514 Sum_probs=58.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
...+.||||.||..++|||+|+.+|+.|-...-++|-.. . | ...||++|++.+.|..||..|+|..+--.
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~-g--~~vaf~~~~~~~~at~am~~lqg~~~s~~ 276 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----G-G--MPVAFADFEEIEQATDAMNHLQGNLLSSS 276 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----C-C--cceEeecHHHHHHHHHHHHHhhcceeccc
Confidence 345679999999999999999999999988777777432 1 2 23899999999999999999999887543
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.49 E-value=1.4e-07 Score=82.33 Aligned_cols=85 Identities=28% Similarity=0.452 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....+++||++||...++++++++...||.+...+++.+.. .|.++||||.+|.+......|+..|||..+.+..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~---~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~-- 360 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA---TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK-- 360 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc---cccccceeeeeeeCCcchhhhhcccchhhhcCce--
Confidence 45568999999999999999999999999999999988533 3789999999999999999999999999999997
Q ss_pred CCceEEEeecCCC
Q 030012 159 SPTLKIQFAHFPF 171 (184)
Q Consensus 159 ~~~l~V~~a~~~~ 171 (184)
|.|+.|-...
T Consensus 361 ---lvvq~A~~g~ 370 (500)
T KOG0120|consen 361 ---LVVQRAIVGA 370 (500)
T ss_pred ---eEeehhhccc
Confidence 9999886433
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.48 E-value=1.7e-06 Score=60.02 Aligned_cols=84 Identities=15% Similarity=0.278 Sum_probs=66.2
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCC--CCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPF--VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~--G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
+||.|.|||...|.++|.+++... |..--+.|..+- ...-+.|||||.|.+.+.|.+-.+.++|..+.... ...
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf---~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~-s~K 77 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDF---KNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFN-SKK 77 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeec---cCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCC-CCc
Confidence 589999999999999999888653 555555555542 22568999999999999999999999999997653 244
Q ss_pred ceEEEeecCC
Q 030012 161 TLKIQFAHFP 170 (184)
Q Consensus 161 ~l~V~~a~~~ 170 (184)
.+.|.||+--
T Consensus 78 vc~i~yAriQ 87 (97)
T PF04059_consen 78 VCEISYARIQ 87 (97)
T ss_pred EEEEehhHhh
Confidence 6789998743
No 87
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.47 E-value=7.5e-07 Score=69.83 Aligned_cols=78 Identities=37% Similarity=0.663 Sum_probs=67.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
..++.++|+.|||.+++.+.|..+|.+|....+++++.. + .+.|||+|.+...|..|...|+|..+--.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~---~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~--- 211 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP---R-----SGIAFVEFLSDRQASAAQQALQGFKITKK--- 211 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC---C-----CceeEEecchhhhhHHHhhhhccceeccC---
Confidence 567789999999999999999999999999999999862 2 34999999999999999999999998742
Q ss_pred CCceEEEeec
Q 030012 159 SPTLKIQFAH 168 (184)
Q Consensus 159 ~~~l~V~~a~ 168 (184)
++++|.|++
T Consensus 212 -~~m~i~~a~ 220 (221)
T KOG4206|consen 212 -NTMQITFAK 220 (221)
T ss_pred -ceEEecccC
Confidence 248888875
No 88
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.45 E-value=3.3e-06 Score=71.38 Aligned_cols=75 Identities=21% Similarity=0.376 Sum_probs=67.5
Q ss_pred CCEEEEcCCCC-CCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 82 SNLLFVDGLPT-DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 82 ~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
+..|.|.||.. .+|.+-|..+|..||+|..|+|...+. + -|+|.|.|...|+-|++.|+|..+.|++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~---- 364 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---D-----NALIQMSDGQQAQLAMEHLEGHKLYGKK---- 364 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---c-----ceeeeecchhHHHHHHHHhhcceecCce----
Confidence 67889999976 579999999999999999999987432 2 7999999999999999999999999998
Q ss_pred ceEEEeecC
Q 030012 161 TLKIQFAHF 169 (184)
Q Consensus 161 ~l~V~~a~~ 169 (184)
|+|.++|-
T Consensus 365 -lrvt~SKH 372 (492)
T KOG1190|consen 365 -LRVTLSKH 372 (492)
T ss_pred -EEEeeccC
Confidence 99999984
No 89
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.43 E-value=1.1e-06 Score=59.00 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=47.8
Q ss_pred CEEEEcCCCCCCcHHH----HHHhhcCCCC-EEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 83 NLLFVDGLPTDCTRRE----VSHLFRPFVG-YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~----L~~~F~~~G~-i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
..|||.|||.+.+... |++++..||. |.+| . .+.|+|.|.+.+.|++|.+.|+|..+.|++
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----------~~tAilrF~~~~~A~RA~KRmegEdVfG~k- 68 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----------GGTAILRFPNQEFAERAQKRMEGEDVFGNK- 68 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----------CCEEEEEeCCHHHHHHHHHhhcccccccce-
Confidence 4689999999887765 5677778854 4443 1 148999999999999999999999999998
Q ss_pred CCCceEEEeecCCCC
Q 030012 158 DSPTLKIQFAHFPFH 172 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~ 172 (184)
|.|.|....+.
T Consensus 69 ----I~v~~~~~~r~ 79 (90)
T PF11608_consen 69 ----ISVSFSPKNRE 79 (90)
T ss_dssp -----EEESS--S--
T ss_pred ----EEEEEcCCccc
Confidence 99999855443
No 90
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.42 E-value=3e-07 Score=73.27 Aligned_cols=73 Identities=19% Similarity=0.371 Sum_probs=65.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
...+||.|.|.-+++++.|...|.+|-.....++++++ .+|+++||+||.|.+..++..|++.|+|..++.+-
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk---RTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrp 261 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK---RTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRP 261 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccc---cccccccceeeeecCHHHHHHHHHhhcccccccch
Confidence 34689999999999999999999999888888888853 34899999999999999999999999999998874
No 91
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.32 E-value=1.9e-06 Score=71.63 Aligned_cols=82 Identities=20% Similarity=0.370 Sum_probs=69.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEE--------EEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--------IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY 150 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--------v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~ 150 (184)
...+.+|||-+|+..+++++|.++|.+++.|.. |.|.+ .+.+++.||=|.|.|++..+|+.|+..+++.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~---dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYT---DKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccc---cccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 456779999999999999999999999998753 33333 2345899999999999999999999999999
Q ss_pred eeCCCCCCCCceEEEeec
Q 030012 151 KFDDKKPDSPTLKIQFAH 168 (184)
Q Consensus 151 ~~~g~~~~~~~l~V~~a~ 168 (184)
.+.+.. |+|.++.
T Consensus 140 df~gn~-----ikvs~a~ 152 (351)
T KOG1995|consen 140 DFCGNT-----IKVSLAE 152 (351)
T ss_pred cccCCC-----chhhhhh
Confidence 999976 8887775
No 92
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.19 E-value=6.3e-06 Score=71.08 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=59.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
....-|=+.+|||++|++||.++|+.++ |.++.+.+ ..|+..|=|||+|.+++++++|++ .|-..+..+-
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-----~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RY--- 77 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-----RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRY--- 77 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-----cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCce---
Confidence 3445666789999999999999999984 77766643 337888999999999999999996 5666666665
Q ss_pred CceEEEee
Q 030012 160 PTLKIQFA 167 (184)
Q Consensus 160 ~~l~V~~a 167 (184)
|.|--+
T Consensus 78 --IEVf~~ 83 (510)
T KOG4211|consen 78 --IEVFTA 83 (510)
T ss_pred --EEEEcc
Confidence 665444
No 93
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.04 E-value=2e-05 Score=55.63 Aligned_cols=59 Identities=20% Similarity=0.367 Sum_probs=38.5
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY 150 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~ 150 (184)
..|+|.++...++.++|+++|+.||.|..|.+.... . -|+|.|.+.+.|+.|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-------~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-------T--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--------S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-------C--EEEEEECCcchHHHHHHHHHhc
Confidence 568899999999999999999999999998886521 1 7899999999999999877433
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.98 E-value=7.3e-06 Score=64.57 Aligned_cols=73 Identities=21% Similarity=0.364 Sum_probs=62.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
......++|.+++..+.+++|++.|.++|.+.+..+ ..+++||+|...++|.+|++.|++.++.++.
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-----------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~-- 162 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-----------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRR-- 162 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-----------hccccceeehhhhhhhhcchhccchhhcCce--
Confidence 456778999999999999999999999999855433 1249999999999999999999999999997
Q ss_pred CCceEEEee
Q 030012 159 SPTLKIQFA 167 (184)
Q Consensus 159 ~~~l~V~~a 167 (184)
|.+.+.
T Consensus 163 ---l~~~~~ 168 (216)
T KOG0106|consen 163 ---ISVEKN 168 (216)
T ss_pred ---eeeccc
Confidence 888443
No 95
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.95 E-value=7.4e-06 Score=68.16 Aligned_cols=79 Identities=9% Similarity=0.190 Sum_probs=64.6
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCC--CEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFV--GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G--~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
-.+|||||-|++|++||.+.+...| .+.++++.. ++..|.+||||+|...+..+.++-|+.|--.+|+|+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFE---NR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~---- 153 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFE---NRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS---- 153 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhh---cccCCcccceEEEEecchHHHHHHHHhcccceecCCC----
Confidence 4799999999999999988887655 445555554 4555899999999999999999999999999999987
Q ss_pred ceEEEeec
Q 030012 161 TLKIQFAH 168 (184)
Q Consensus 161 ~l~V~~a~ 168 (184)
+..+.|.+
T Consensus 154 P~V~~~NK 161 (498)
T KOG4849|consen 154 PTVLSYNK 161 (498)
T ss_pred Ceeeccch
Confidence 45555544
No 96
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.91 E-value=6.4e-05 Score=63.18 Aligned_cols=82 Identities=26% Similarity=0.234 Sum_probs=67.0
Q ss_pred CCCCCEEEEcCCC--CCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 79 KGESNLLFVDGLP--TDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 79 ~~~~~~lfVgnLp--~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
..+++.|.+.=|. ..+|-|-|..+....|.|..|.|.++ +-.-|.|||++.+.|++|...|||..|.-.
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--------ngVQAmVEFdsv~~AqrAk~alNGADIYsG- 187 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--------NGVQAMVEFDSVEVAQRAKAALNGADIYSG- 187 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--------cceeeEEeechhHHHHHHHhhccccccccc-
Confidence 3445566655444 56899999999999999999988753 224799999999999999999999998875
Q ss_pred CCCCceEEEeecCCC
Q 030012 157 PDSPTLKIQFAHFPF 171 (184)
Q Consensus 157 ~~~~~l~V~~a~~~~ 171 (184)
+++|+|+||++.+
T Consensus 188 --CCTLKIeyAkP~r 200 (494)
T KOG1456|consen 188 --CCTLKIEYAKPTR 200 (494)
T ss_pred --ceeEEEEecCcce
Confidence 6789999999755
No 97
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.84 E-value=6.3e-06 Score=71.87 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....+++|+--|+..+++.+|.++|+.+|.|..|+++.+ +..++++|.|||+|.|.+....|| .|.|..+.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~D---r~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~p-- 249 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGD---RNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVP-- 249 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecc---ccchhhcceeEEEEecccchhhHh-hhcCCcccCce--
Confidence 344579999999999999999999999999999999985 344789999999999999999999 79999999975
Q ss_pred CCceEEEeec
Q 030012 159 SPTLKIQFAH 168 (184)
Q Consensus 159 ~~~l~V~~a~ 168 (184)
|.|+...
T Consensus 250 ---v~vq~sE 256 (549)
T KOG0147|consen 250 ---VIVQLSE 256 (549)
T ss_pred ---eEecccH
Confidence 8887653
No 98
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.81 E-value=2.3e-05 Score=64.66 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=70.0
Q ss_pred CCCCCEEE-EcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 79 KGESNLLF-VDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 79 ~~~~~~lf-VgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++| |++|++.+++++|+..|..+|.|..+++.. ...++..+||++|+|.+...+..++.. +...+.++.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~---~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~- 255 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPT---DEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRP- 255 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCC---CCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcc-
Confidence 34455666 999999999999999999999999998876 444589999999999999999999877 788888875
Q ss_pred CCCceEEEeecC
Q 030012 158 DSPTLKIQFAHF 169 (184)
Q Consensus 158 ~~~~l~V~~a~~ 169 (184)
+.+.+...
T Consensus 256 ----~~~~~~~~ 263 (285)
T KOG4210|consen 256 ----LRLEEDEP 263 (285)
T ss_pred ----cccccCCC
Confidence 88888764
No 99
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.71 E-value=0.00021 Score=61.88 Aligned_cols=77 Identities=18% Similarity=0.345 Sum_probs=56.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEE-EEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYRE-IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
....|-+.+||+.||++||.++|+..--+.. +.++.+.. +++.|=|||.|++.+.|++|+. -|-..|..|-
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r----gR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRY--- 173 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR----GRPTGEAFVQFESQESAEIALG-RHRENIGHRY--- 173 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC----CCcccceEEEecCHHHHHHHHH-HHHHhhccce---
Confidence 4567888999999999999999998643333 33444322 6778899999999999999986 4556666655
Q ss_pred CceEEEee
Q 030012 160 PTLKIQFA 167 (184)
Q Consensus 160 ~~l~V~~a 167 (184)
|.|.-+
T Consensus 174 --IEvF~S 179 (510)
T KOG4211|consen 174 --IEVFRS 179 (510)
T ss_pred --EEeehh
Confidence 555443
No 100
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00011 Score=64.73 Aligned_cols=80 Identities=20% Similarity=0.313 Sum_probs=63.4
Q ss_pred CCCCEEEEcCCCCCCc------HHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC
Q 030012 80 GESNLLFVDGLPTDCT------RREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD 153 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~t------e~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~ 153 (184)
.....|+|.|+|---. ..-|..+|+++|.++...+.-++. |..+||.|++|.+..+|+.|++.|||+.++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~----ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE----GGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc----CCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 3456899999985322 234678999999999988876654 458999999999999999999999999998
Q ss_pred CCCCCCCceEEEee
Q 030012 154 DKKPDSPTLKIQFA 167 (184)
Q Consensus 154 g~~~~~~~l~V~~a 167 (184)
.. +++.|..-
T Consensus 132 kn----Htf~v~~f 141 (698)
T KOG2314|consen 132 KN----HTFFVRLF 141 (698)
T ss_pred cc----ceEEeehh
Confidence 74 46766544
No 101
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00013 Score=63.38 Aligned_cols=67 Identities=24% Similarity=0.344 Sum_probs=51.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcce---EEEEEECCHHHHHHHHHHh
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMV---LCFVEFDDPKCARTAMDAL 147 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G---~afV~F~~~~~A~~Ai~~l 147 (184)
.-+++||||+||++++|++|...|..||.+. |.+..+...+..-.++| |.|+.|+++.+.+.-+.+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 3468999999999999999999999999864 44443222222244677 9999999999988866544
No 102
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.64 E-value=0.00016 Score=61.48 Aligned_cols=79 Identities=15% Similarity=0.272 Sum_probs=65.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
+++.+|.+.|+|..++||+|+..|..-|..++..... ++.+-++++.+++.++|..|+-.++.+.+.+..
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff-------~kd~kmal~q~~sveeA~~ali~~hnh~lgen~--- 481 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF-------QKDRKMALPQLESVEEAIQALIDLHNHYLGENH--- 481 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec-------CCCcceeecccCChhHhhhhccccccccCCCCc---
Confidence 4567999999999999999999999888776654433 233449999999999999999999998887753
Q ss_pred CceEEEeecC
Q 030012 160 PTLKIQFAHF 169 (184)
Q Consensus 160 ~~l~V~~a~~ 169 (184)
-|+|.|++.
T Consensus 482 -hlRvSFSks 490 (492)
T KOG1190|consen 482 -HLRVSFSKS 490 (492)
T ss_pred -eEEEEeecc
Confidence 599999874
No 103
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.61 E-value=0.00011 Score=62.67 Aligned_cols=72 Identities=21% Similarity=0.319 Sum_probs=57.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeec---CCCCCCCCc-------ceEEEEEECCHHHHHHHHHHh
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHK---EPRRTGDRA-------MVLCFVEFDDPKCARTAMDAL 147 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~---~~~~~~g~~-------~G~afV~F~~~~~A~~Ai~~l 147 (184)
+..++++|.+-|||.+-.-+.|.++|..+|.|+.|+|... ..+..+... +-||||+|+..+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3457899999999999888999999999999999999764 222222222 568999999999999999877
Q ss_pred cC
Q 030012 148 HG 149 (184)
Q Consensus 148 ~g 149 (184)
+-
T Consensus 307 ~~ 308 (484)
T KOG1855|consen 307 NP 308 (484)
T ss_pred ch
Confidence 53
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.54 E-value=0.0052 Score=51.96 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=69.0
Q ss_pred CCCCCCEEEEcCCCCC-CcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 78 KKGESNLLFVDGLPTD-CTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
...++..+.|-+|... ++-+.|-.+|..||.|..|++++.++ |-|.|+..|..+.++|+..||+..+-|.+
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~--------gtamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP--------GTAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc--------ceeEEEcCcHHHHHHHHHHhccCccccce
Confidence 3456788999999864 57788999999999999999987432 48999999999999999999998888887
Q ss_pred CCCCceEEEeecCCC
Q 030012 157 PDSPTLKIQFAHFPF 171 (184)
Q Consensus 157 ~~~~~l~V~~a~~~~ 171 (184)
|.|.+++...
T Consensus 355 -----l~v~~SkQ~~ 364 (494)
T KOG1456|consen 355 -----LNVCVSKQNF 364 (494)
T ss_pred -----EEEeeccccc
Confidence 9999887643
No 105
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.43 E-value=0.00038 Score=42.90 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=39.7
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHH
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAM 144 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai 144 (184)
+.|-|.+.+.+..+. +...|..||+|.++.+... .-+.+|+|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~---------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES---------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC---------CcEEEEEECCHHHHHhhC
Confidence 456778877666544 5558889999999887521 128999999999999985
No 106
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.42 E-value=0.00056 Score=56.98 Aligned_cols=81 Identities=19% Similarity=0.383 Sum_probs=61.8
Q ss_pred CCCEEEEcCCCCCCcHHH----H--HHhhcCCCCEEEEEEeecCCCCCCCCcceE--EEEEECCHHHHHHHHHHhcCCee
Q 030012 81 ESNLLFVDGLPTDCTRRE----V--SHLFRPFVGYREIRVIHKEPRRTGDRAMVL--CFVEFDDPKCARTAMDALHGYKF 152 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~----L--~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~--afV~F~~~~~A~~Ai~~l~g~~~ 152 (184)
..+-+||-+|++.+..++ | .++|.+||.|..|.+-++-..- ...-+. .||+|.+.++|.+||...+|..+
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~--nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSL--NSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEeccccccc--ccccccceEEEEecchHHHHHHHHHhccccc
Confidence 456799999998887666 2 4899999999998764421100 111122 39999999999999999999999
Q ss_pred CCCCCCCCceEEEeec
Q 030012 153 DDKKPDSPTLKIQFAH 168 (184)
Q Consensus 153 ~g~~~~~~~l~V~~a~ 168 (184)
+|+- |+..|..
T Consensus 191 DGr~-----lkatYGT 201 (480)
T COG5175 191 DGRV-----LKATYGT 201 (480)
T ss_pred cCce-----EeeecCc
Confidence 9997 9998874
No 107
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.41 E-value=0.00057 Score=60.08 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=50.3
Q ss_pred HHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceEEEee
Q 030012 98 EVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167 (184)
Q Consensus 98 ~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~V~~a 167 (184)
+++.-+.+||.|.+|.+.+.-....-....|.-||+|.+.+++++|+++|+|.++.++. +...|-
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRt-----VvtsYy 489 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRT-----VVASYY 489 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcE-----EEEEec
Confidence 45566778999999998765111111234577899999999999999999999999997 777764
No 108
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.40 E-value=9.1e-05 Score=63.19 Aligned_cols=85 Identities=18% Similarity=0.300 Sum_probs=65.8
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCC--CCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcC-CeeCCCCCCC
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPF--VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG-YKFDDKKPDS 159 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~--G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g-~~~~g~~~~~ 159 (184)
+++|++||.+..+.+||+.+|... +.-.. .++. .||+||++.+...|.+|++.++| .++.|.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~-fl~k----------~gyafvd~pdq~wa~kaie~~sgk~elqGkr--- 67 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQ-FLVK----------SGYAFVDCPDQQWANKAIETLSGKVELQGKR--- 67 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcc-eeee----------cceeeccCCchhhhhhhHHhhchhhhhcCce---
Confidence 579999999999999999999653 21111 2222 25999999999999999999999 5677776
Q ss_pred CceEEEeecCCCCCCCCCCCCCCC
Q 030012 160 PTLKIQFAHFPFHLPSDGDEKCTP 183 (184)
Q Consensus 160 ~~l~V~~a~~~~~~~~~~~~~~~~ 183 (184)
+.|.+.-....+++..+.+.+|
T Consensus 68 --~e~~~sv~kkqrsrk~Qirnip 89 (584)
T KOG2193|consen 68 --QEVEHSVPKKQRSRKIQIRNIP 89 (584)
T ss_pred --eeccchhhHHHHhhhhhHhcCC
Confidence 8898887777666666666665
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.40 E-value=0.0022 Score=58.04 Aligned_cols=75 Identities=21% Similarity=0.392 Sum_probs=62.1
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEE-EEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCc
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYR-EIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 161 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~-~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~ 161 (184)
+.|-+.|+|++++-+||.++|..|--+- +|++-..+. |...|-|.|.|++.++|.+|...|++..|..++
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~----G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~----- 938 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDD----GVPTGECMVAFESQEEARRASMDLDGQKIRNRV----- 938 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCC----CCcccceeEeecCHHHHHhhhhccccCccccee-----
Confidence 4788999999999999999999995543 355544333 677789999999999999999999999999887
Q ss_pred eEEEe
Q 030012 162 LKIQF 166 (184)
Q Consensus 162 l~V~~ 166 (184)
++|..
T Consensus 939 V~l~i 943 (944)
T KOG4307|consen 939 VSLRI 943 (944)
T ss_pred EEEEe
Confidence 77653
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.00076 Score=58.83 Aligned_cols=68 Identities=19% Similarity=0.187 Sum_probs=57.1
Q ss_pred CCCCCCCCEEEEcCCCCCCcHHHHHHhhc-CCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHH
Q 030012 76 PLKKGESNLLFVDGLPTDCTRREVSHLFR-PFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDA 146 (184)
Q Consensus 76 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~ 146 (184)
..+.++.+|||||+||.-++.+||..+|+ -||.|..+-|=.+.. -+-++|-+-|+|.+..+-.+||.+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k---~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPK---LKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcc---cCCCCCcceeeecccHHHHHHHhh
Confidence 34567889999999999999999999998 699999988855411 145788999999999999999873
No 111
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.24 E-value=0.00016 Score=66.19 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=69.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCc
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 161 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~ 161 (184)
...+||.|+|+..|.++|+.++..+|.+++++++.... |+++|.+||.|.++.++.++....+...+....
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~----gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~----- 806 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA----GKPKGKARVDYNTEADASRKVASVDVAGKRENN----- 806 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc----cccccceeccCCCcchhhhhcccchhhhhhhcC-----
Confidence 45799999999999999999999999999999876433 789999999999999999998888877777665
Q ss_pred eEEEeecCCCCC
Q 030012 162 LKIQFAHFPFHL 173 (184)
Q Consensus 162 l~V~~a~~~~~~ 173 (184)
+.|+.+..+..+
T Consensus 807 ~~v~vsnp~~~K 818 (881)
T KOG0128|consen 807 GEVQVSNPERDK 818 (881)
T ss_pred ccccccCCcccc
Confidence 777775544333
No 112
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.16 E-value=0.00083 Score=61.99 Aligned_cols=85 Identities=19% Similarity=0.290 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
......+++++|..++....|...|..||.|..|.+-. ...|++|.|++...++.|+..|-|+-+.+..
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h---------gq~yayi~yes~~~aq~a~~~~rgap~G~P~-- 520 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH---------GQPYAYIQYESPPAAQAATHDMRGAPLGGPP-- 520 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc---------CCcceeeecccCccchhhHHHHhcCcCCCCC--
Confidence 34567899999999999999999999999999887633 2349999999999999999999999999864
Q ss_pred CCceEEEeecCCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~~ 175 (184)
..|.|.|++.++..+.
T Consensus 521 -~r~rvdla~~~~~~Pq 536 (975)
T KOG0112|consen 521 -RRLRVDLASPPGATPQ 536 (975)
T ss_pred -cccccccccCCCCChh
Confidence 4599999998776554
No 113
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.14 E-value=0.0016 Score=54.42 Aligned_cols=77 Identities=13% Similarity=0.218 Sum_probs=61.3
Q ss_pred CCCCCEEEEcCCC----CCCc-------HHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHh
Q 030012 79 KGESNLLFVDGLP----TDCT-------RREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL 147 (184)
Q Consensus 79 ~~~~~~lfVgnLp----~~~t-------e~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l 147 (184)
....++|.+.||= +..+ +++|++-.++||.|.+|.+.. -++.|.+-|.|.+.++|+.||+.|
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d-------~hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD-------RHPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec-------cCCCceeEEEeCChHHHHHHHHHh
Confidence 3456789999984 2334 345666688999999998864 256689999999999999999999
Q ss_pred cCCeeCCCCCCCCceEEEee
Q 030012 148 HGYKFDDKKPDSPTLKIQFA 167 (184)
Q Consensus 148 ~g~~~~g~~~~~~~l~V~~a 167 (184)
+|..|+||. |.....
T Consensus 335 ~GR~fdgRq-----l~A~i~ 349 (382)
T KOG1548|consen 335 DGRWFDGRQ-----LTASIW 349 (382)
T ss_pred cCeeecceE-----EEEEEe
Confidence 999999998 876654
No 114
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.13 E-value=0.00051 Score=60.88 Aligned_cols=80 Identities=21% Similarity=0.332 Sum_probs=65.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhc-CCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFR-PFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
....++.|||.||-.-.|.-+|+.++. .+|.|.+. |+. +-+..|||.|.+.++|.+-..+|||..+....
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmD--------kIKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMD--------KIKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHH--------HhhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 456789999999999999999999998 45666665 432 23448999999999999999999999998776
Q ss_pred CCCCceEEEeec
Q 030012 157 PDSPTLKIQFAH 168 (184)
Q Consensus 157 ~~~~~l~V~~a~ 168 (184)
..-|.+.|+.
T Consensus 511 --PK~L~adf~~ 520 (718)
T KOG2416|consen 511 --PKHLIADFVR 520 (718)
T ss_pred --CceeEeeecc
Confidence 3348888875
No 115
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.03 E-value=0.0027 Score=48.92 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=56.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 154 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g 154 (184)
......|.|.+||...+++||++...+.|+|....+.++ |++.|+|...++.+-|+..|+..++.-
T Consensus 112 rrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD----------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 112 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD----------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred cccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc----------cceeeeeeehhhHHHHHHhhccccccC
Confidence 445568999999999999999999999999988877653 388999999999999999998766654
No 116
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.99 E-value=0.00084 Score=56.85 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=60.0
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
..|-|.||.+.+|.++++.+|...|.|.+++|+....+-......-.|||.|.|...+..|. .|..+++-++.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdra 80 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRA 80 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeee
Confidence 37889999999999999999999999999998764433333445568999999999999986 47777777775
No 117
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.94 E-value=0.0006 Score=54.71 Aligned_cols=76 Identities=11% Similarity=0.238 Sum_probs=59.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCC-----CCCCCcceE----EEEEECCHHHHHHHHHHhcCCe
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPR-----RTGDRAMVL----CFVEFDDPKCARTAMDALHGYK 151 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~-----~~~g~~~G~----afV~F~~~~~A~~Ai~~l~g~~ 151 (184)
..-.||+++||+.++..-|+++|..||.|=.|.|...... ...|.++.. +.|+|.+...|..+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4468999999999999999999999999988887543211 001122222 3589999999999999999999
Q ss_pred eCCCC
Q 030012 152 FDDKK 156 (184)
Q Consensus 152 ~~g~~ 156 (184)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99986
No 118
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.90 E-value=0.0049 Score=39.15 Aligned_cols=56 Identities=23% Similarity=0.402 Sum_probs=45.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCC---CCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHh
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPF---VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL 147 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~---G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l 147 (184)
...+|+|.++. +.+.+||+.+|..| .....|.++.+. -|-|.|.+.+.|.+|+..|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt----------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT----------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC----------cEEEEECCHHHHHHHHHcC
Confidence 35689999985 68889999999988 235678888752 5889999999999999764
No 119
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.87 E-value=0.0017 Score=58.18 Aligned_cols=67 Identities=15% Similarity=0.069 Sum_probs=59.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
+.++.-++||+|+...+..+-++.++..+|.|.+++... |+|++|........|+..++-..+++..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------------fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------------FGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------------hcccchhhHHHHHHHHHHhcccCCCcch
Confidence 355678999999999999999999999999998886543 9999999999999999999999998876
No 120
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.71 E-value=0.0039 Score=47.92 Aligned_cols=88 Identities=18% Similarity=0.268 Sum_probs=56.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcC-CCCEE---EEEE-eecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRP-FVGYR---EIRV-IHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 154 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~---~v~l-~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g 154 (184)
....+|-|.+||+.+||+++.+.+.. ++... .+.- ..+...+ .....-|+|.|.+.+++..-++.++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~--~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFK--PPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSST--TS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCC--CCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 44569999999999999999997776 66652 3321 1111111 1234479999999999999999999999998
Q ss_pred CCCCCCceEEEeecC
Q 030012 155 KKPDSPTLKIQFAHF 169 (184)
Q Consensus 155 ~~~~~~~l~V~~a~~ 169 (184)
.++...+-.|+||-.
T Consensus 83 ~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 83 SKGNEYPAVVEFAPY 97 (176)
T ss_dssp TTS-EEEEEEEE-SS
T ss_pred CCCCCcceeEEEcch
Confidence 875555667888855
No 121
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.68 E-value=0.0024 Score=54.07 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=61.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCC-EEE--EEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVG-YRE--IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~-i~~--v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
.....|-+.+||++++.+||.++|..|-. |.. |.++.... |++.|=|||+|.+.+.|..|....+.+....|.
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q----GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RY 353 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ----GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRY 353 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC----CCcChhhhhhhhhhHHHHHHHHHHHHhhcccce
Confidence 33568889999999999999999988743 333 56665322 678889999999999999999888877776765
Q ss_pred CCCCceEEEee
Q 030012 157 PDSPTLKIQFA 167 (184)
Q Consensus 157 ~~~~~l~V~~a 167 (184)
|.|--.
T Consensus 354 -----iEvfp~ 359 (508)
T KOG1365|consen 354 -----IEVFPC 359 (508)
T ss_pred -----EEEeec
Confidence 665433
No 122
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.64 E-value=0.01 Score=41.35 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=49.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecC-C---CCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKE-P---RRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~-~---~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.+-|.|-+-|.. ..+.+-+.|++||.|++..-.... . .........+-.|+|.++.+|++|+. .||..+.|.-
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~- 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL- 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE-
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE-
Confidence 455778888877 556777899999999887510000 0 00000112389999999999999995 7999999863
Q ss_pred CCCceEEEee
Q 030012 158 DSPTLKIQFA 167 (184)
Q Consensus 158 ~~~~l~V~~a 167 (184)
.+-|.|.
T Consensus 83 ---mvGV~~~ 89 (100)
T PF05172_consen 83 ---MVGVKPC 89 (100)
T ss_dssp ---EEEEEE-
T ss_pred ---EEEEEEc
Confidence 2346665
No 123
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.45 E-value=0.0088 Score=44.40 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=50.4
Q ss_pred CCCCEEEEcCCC------CCCcH---HHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Q 030012 80 GESNLLFVDGLP------TDCTR---REVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY 150 (184)
Q Consensus 80 ~~~~~lfVgnLp------~~~te---~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~ 150 (184)
++..||.|.=+. ....+ ++|-+.|..||+++-+|++.. .-.|+|.+-.+|.+|+. ++|.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-----------~mwVTF~dg~sALaals-~dg~ 92 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-----------TMWVTFRDGQSALAALS-LDGI 92 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-----------CEEEEESSCHHHHHHHH-GCCS
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-----------eEEEEECccHHHHHHHc-cCCc
Confidence 344566665444 12232 367788889999998888742 56999999999999995 9999
Q ss_pred eeCCCCCCCCceEEEeec
Q 030012 151 KFDDKKPDSPTLKIQFAH 168 (184)
Q Consensus 151 ~~~g~~~~~~~l~V~~a~ 168 (184)
++.|+. |+|....
T Consensus 93 ~v~g~~-----l~i~LKt 105 (146)
T PF08952_consen 93 QVNGRT-----LKIRLKT 105 (146)
T ss_dssp EETTEE-----EEEEE--
T ss_pred EECCEE-----EEEEeCC
Confidence 999997 8887643
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.40 E-value=0.0077 Score=54.61 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=63.8
Q ss_pred CCCCCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEE-EEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC
Q 030012 75 SPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE-IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD 153 (184)
Q Consensus 75 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~ 153 (184)
.+.+......|||..||..+++.++.++|...-.|++ |.|....+ ++.++.|||+|..++++..|...-+-+.+.
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~----~~~~~~afv~F~~~~a~~~a~~~~~k~y~G 502 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPT----DLLRPAAFVAFIHPTAPLTASSVKTKFYPG 502 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCc----ccccchhhheeccccccchhhhcccccccC
Confidence 3445677889999999999999999999998777776 66654332 567789999999999988887655555555
Q ss_pred CCCCCCCceEEEe
Q 030012 154 DKKPDSPTLKIQF 166 (184)
Q Consensus 154 g~~~~~~~l~V~~ 166 (184)
.+. |+|.-
T Consensus 503 ~r~-----irv~s 510 (944)
T KOG4307|consen 503 HRI-----IRVDS 510 (944)
T ss_pred ceE-----EEeec
Confidence 554 77764
No 125
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.39 E-value=0.022 Score=48.47 Aligned_cols=59 Identities=25% Similarity=0.336 Sum_probs=46.8
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCC----CCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHH
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPF----VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMD 145 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~----G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~ 145 (184)
-.|-+.+||+++++.|+.++|.+- |..+.+-+++. .+|+..|=|||.|..+++|+.|+.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r----pdgrpTGdAFvlfa~ee~aq~aL~ 224 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR----PDGRPTGDAFVLFACEEDAQFALR 224 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC----CCCCcccceEEEecCHHHHHHHHH
Confidence 356678999999999999999632 35556666643 336777899999999999999986
No 126
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.37 E-value=0.029 Score=37.74 Aligned_cols=56 Identities=20% Similarity=0.453 Sum_probs=42.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhc
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH 148 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~ 148 (184)
..+..||+ .|.++...||.++|+.||.|. |.++.+ + -|||...+.+.|..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-T---------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-T---------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-T---------EEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-C---------cEEEEeecHHHHHHHHHHhc
Confidence 34566676 999999999999999999864 555542 1 79999999999999998885
No 127
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.10 E-value=0.02 Score=47.07 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=51.6
Q ss_pred HHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceEEEeec
Q 030012 96 RREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAH 168 (184)
Q Consensus 96 e~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~V~~a~ 168 (184)
++++++-.++||.|..|.|...+.... .-..--||+|+..++|.+|+-.|||.-|.|+. ++..|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~--deavRiFveF~r~e~aiKA~VdlnGRyFGGr~-----v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPE--DEAVRIFVEFERVESAIKAVVDLNGRYFGGRV-----VSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCcc--chhheeeeeeccHHHHHHHHHhcCCceeccee-----eeheecc
Confidence 457888899999999988766443221 12235699999999999999999999999997 7766653
No 128
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.86 E-value=0.15 Score=36.20 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=53.6
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCC-CCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPF-VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~-G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
...+.+...|..++.++|..+.+.+ ..|..++++++.. .++--++++|.+.+.|..-.+.+||+.+.--.+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-----pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp 84 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-----PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP 84 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-----CceEEEEEEECCHHHHHHHHHHhCCCccCCCCC
Confidence 3455556666667777887777766 5667889987532 356688999999999999999999998877553
No 129
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.72 E-value=0.0054 Score=49.31 Aligned_cols=60 Identities=17% Similarity=0.321 Sum_probs=47.7
Q ss_pred HHHhhc-CCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceEEEee
Q 030012 99 VSHLFR-PFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 167 (184)
Q Consensus 99 L~~~F~-~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~V~~a 167 (184)
+...|+ +||+|+++.+-.. .+.+..|-.+|.|...++|++|++.||+-.+.|+. |..++.
T Consensus 85 ~f~E~~~kygEiee~~Vc~N----l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~p-----i~ae~~ 145 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDN----LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRP-----IHAELS 145 (260)
T ss_pred HHHHHHHHhhhhhhhhhhcc----cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCc-----ceeeec
Confidence 333334 8999999866542 23567788999999999999999999999999986 887775
No 130
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.68 E-value=0.012 Score=47.31 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=53.0
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhc
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH 148 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~ 148 (184)
..|||.||+..++.|.|.+.|+.||.|....++.+.. ++..+=++|+|...-.|.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r----~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR----GKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc----ccccccchhhhhcchhHHHHHHHhc
Confidence 7899999999999999999999999998765555433 4556678999999999999998774
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.60 E-value=0.0037 Score=57.93 Aligned_cols=79 Identities=15% Similarity=0.174 Sum_probs=64.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
..+.+||+|||+..+++.+|+..|..+|.|.+|.|-.... +.---|+||.|.+...+..|+..+.+..|....
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~----~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~--- 442 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI----KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT--- 442 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC----CcccchhhhhhhccccCcccchhhcCCccccCc---
Confidence 3568999999999999999999999999999998855322 223349999999999999999999987776654
Q ss_pred CceEEEee
Q 030012 160 PTLKIQFA 167 (184)
Q Consensus 160 ~~l~V~~a 167 (184)
+++.+.
T Consensus 443 --~r~glG 448 (975)
T KOG0112|consen 443 --HRIGLG 448 (975)
T ss_pred --cccccc
Confidence 666666
No 132
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.37 E-value=0.001 Score=61.05 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=56.1
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD 153 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~ 153 (184)
..++||.||+..+.+++|...|..+|.+..+++.. ....++.+|.|+++|...+.+.+|+...++..+.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~---h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVI---HKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHH---HhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 35899999999999999999999999887776652 1222678899999999999999999765554444
No 133
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.09 E-value=0.011 Score=49.36 Aligned_cols=84 Identities=19% Similarity=0.410 Sum_probs=61.5
Q ss_pred CCCEEEEcCCCCCCcHH-HH--HHhhcCCCCEEEEEEeecCC--CCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 81 ESNLLFVDGLPTDCTRR-EV--SHLFRPFVGYREIRVIHKEP--RRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~-~L--~~~F~~~G~i~~v~l~~~~~--~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
..+-+||-+|+.....+ .| .+.|.+||.|..+.+..+.. ...++ . --++|+|+..++|..||...+|+..+++
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~-~-~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGG-T-CSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCC-C-CcccccccchHhhhhHHHHhhhHHhhhh
Confidence 34678899998776444 44 37889999999987765331 11111 1 1379999999999999999999999998
Q ss_pred CCCCCceEEEeecCCC
Q 030012 156 KPDSPTLKIQFAHFPF 171 (184)
Q Consensus 156 ~~~~~~l~V~~a~~~~ 171 (184)
. |+..++-.+.
T Consensus 154 ~-----lka~~gttky 164 (327)
T KOG2068|consen 154 A-----LKASLGTTKY 164 (327)
T ss_pred h-----hHHhhCCCcc
Confidence 6 7777765543
No 134
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.81 E-value=0.052 Score=42.04 Aligned_cols=61 Identities=25% Similarity=0.411 Sum_probs=45.0
Q ss_pred cHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhc--CCeeCCCCCCCCceEEEeecC
Q 030012 95 TRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH--GYKFDDKKPDSPTLKIQFAHF 169 (184)
Q Consensus 95 te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~--g~~~~g~~~~~~~l~V~~a~~ 169 (184)
..+.|+++|..++.+..+..++. .+-..|.|.+.+.|.+|...|+ +..+.|.. |+|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s---------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~-----l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS---------FRRIRVVFESPESAQRARQLLHWDGTSFNGKR-----LRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT---------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE------EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC---------CCEEEEEeCCHHHHHHHHHHhcccccccCCCc-----eEEEEccc
Confidence 45789999999999988877642 2267999999999999999999 99999987 99999843
No 135
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.38 E-value=0.17 Score=45.01 Aligned_cols=78 Identities=13% Similarity=0.252 Sum_probs=57.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcC--CCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHH-------HhcCCee
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRP--FVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMD-------ALHGYKF 152 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~--~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~-------~l~g~~~ 152 (184)
.+.|.+..||..+.+|+++.+|+. |-.+++|.+.... -=||+|++..+|+.|.+ .++|+-|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 356778999999999999999964 7888999886531 23999999999999976 4567777
Q ss_pred CCCCCCCCceEEEeecCCCC
Q 030012 153 DDKKPDSPTLKIQFAHFPFH 172 (184)
Q Consensus 153 ~g~~~~~~~l~V~~a~~~~~ 172 (184)
..|. ++|.-.++++..+
T Consensus 245 mARI---Kaintf~pkngyr 261 (684)
T KOG2591|consen 245 MARI---KAINTFFPKNGYR 261 (684)
T ss_pred hhhh---hhhhcccCCCCCC
Confidence 7763 2344344455444
No 136
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.35 E-value=0.32 Score=36.12 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=54.1
Q ss_pred CCCCEEEEcCCCCCCcH-HHHH---HhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 80 GESNLLFVDGLPTDCTR-REVS---HLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te-~~L~---~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
.+=.||.|.=|..++.. +|++ ..++.||.|.+|.+.- +. -|.|.|.|..+|=.|+.+++. ...|.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG----rq------savVvF~d~~SAC~Av~Af~s-~~pgt 152 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG----RQ------SAVVVFKDITSACKAVSAFQS-RAPGT 152 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC----Cc------eEEEEehhhHHHHHHHHhhcC-CCCCc
Confidence 44468888877666533 4444 4567899999998752 22 699999999999999999987 55566
Q ss_pred CCCCCceEEEeec
Q 030012 156 KPDSPTLKIQFAH 168 (184)
Q Consensus 156 ~~~~~~l~V~~a~ 168 (184)
. +++.|-.
T Consensus 153 m-----~qCsWqq 160 (166)
T PF15023_consen 153 M-----FQCSWQQ 160 (166)
T ss_pred e-----EEeeccc
Confidence 5 8888853
No 137
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.87 E-value=0.039 Score=51.17 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=61.3
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCce
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 162 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l 162 (184)
.+.++.|.+-..+..-|..+|.+||.|.+.+.+++-. .|.|+|...+.|..|+++|+|+++--- ..|.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N---------~alvs~~s~~sai~a~dAl~gkevs~~---g~Ps 366 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN---------MALVSFSSVESAILALDALQGKEVSVT---GAPS 366 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc---------chhhhhHHHHHHHHhhhhhcCCccccc---CCce
Confidence 3455666667788899999999999999988776422 799999999999999999999876543 3468
Q ss_pred EEEeecC
Q 030012 163 KIQFAHF 169 (184)
Q Consensus 163 ~V~~a~~ 169 (184)
+|.||+.
T Consensus 367 ~V~~ak~ 373 (1007)
T KOG4574|consen 367 RVSFAKT 373 (1007)
T ss_pred eEEeccc
Confidence 9999984
No 138
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.20 E-value=0.58 Score=30.46 Aligned_cols=67 Identities=27% Similarity=0.464 Sum_probs=38.6
Q ss_pred EEEEc-CCCCCCcHHHHHHhhcCCCCE-----EEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 84 LLFVD-GLPTDCTRREVSHLFRPFVGY-----REIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 84 ~lfVg-nLp~~~te~~L~~~F~~~G~i-----~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
++||. +--..++..+|..++...+.+ -.+++... |+||+-.. +.|+.+++.|++..+.|++
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-----------~S~vev~~-~~a~~v~~~l~~~~~~gk~- 68 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-----------FSFVEVPE-EVAEKVLEALNGKKIKGKK- 68 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS------------EEEEE-T-T-HHHHHHHHTT--SSS---
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-----------EEEEEECH-HHHHHHHHHhcCCCCCCee-
Confidence 34552 233467888888888776554 45666431 89999764 5889999999999999998
Q ss_pred CCCceEEEee
Q 030012 158 DSPTLKIQFA 167 (184)
Q Consensus 158 ~~~~l~V~~a 167 (184)
++|+.|
T Consensus 69 ----v~ve~A 74 (74)
T PF03880_consen 69 ----VRVERA 74 (74)
T ss_dssp ------EEE-
T ss_pred ----EEEEEC
Confidence 988764
No 139
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.61 E-value=0.79 Score=39.96 Aligned_cols=72 Identities=19% Similarity=0.400 Sum_probs=60.9
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCC-CCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPF-VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~-G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
+..|+|=-+|-.++..||-.+...+ -.|.+++++++.. .++-..+|+|.+.++|..-.+.+||..|..-.++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~-----pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e 146 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM-----PNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE 146 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC-----CceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc
Confidence 7899999999999999999988765 6788999998532 3455789999999999999999999999876533
No 140
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.41 E-value=0.83 Score=29.34 Aligned_cols=52 Identities=25% Similarity=0.342 Sum_probs=40.1
Q ss_pred CCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 93 DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 93 ~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
.++-++++..+..|.- ..|+ . +++ || ||.|.+..+|++|....+|..+...+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~--~---d~t-----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~ 62 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIR--D---DRT-----GF-YIVFNDSKEAERCFRAEDGTLFFTYR 62 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEE--e---cCC-----EE-EEEECChHHHHHHHHhcCCCEEEEEE
Confidence 5778899999999963 3333 2 232 34 89999999999999999998887654
No 141
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=90.72 E-value=0.49 Score=42.08 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=35.2
Q ss_pred CcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceEEEeecC
Q 030012 125 RAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAHF 169 (184)
Q Consensus 125 ~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~V~~a~~ 169 (184)
.+.|||||.|.+.+++....+++||+.+..-. ......+.||+-
T Consensus 429 cNvGYAFINm~sp~ai~~F~kAFnGk~W~~Fn-S~Kia~itYArI 472 (549)
T KOG4660|consen 429 CNVGYAFINMTSPEAIIRFYKAFNGKKWEKFN-SEKIASITYARI 472 (549)
T ss_pred cccceeEEeecCHHHHHHHHHHHcCCchhhhc-ceeeeeeehhhh
Confidence 46899999999999999999999998776543 233467888864
No 142
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=90.43 E-value=0.24 Score=41.03 Aligned_cols=74 Identities=18% Similarity=0.077 Sum_probs=59.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
....++|++++.+.+.+.+...++..+|....+.+...+ ....++|++.+.|...+.+..|+.....+...++.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~---~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~ 159 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLE---DSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNK 159 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhc---cccccccceeeccccHHHHHHHHHhhhcccccccc
Confidence 357899999999999999999999999988877665522 22578899999999999999999755555665554
No 143
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.39 E-value=0.2 Score=43.73 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=55.2
Q ss_pred CEEEEcCCCCCC-cHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCc
Q 030012 83 NLLFVDGLPTDC-TRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 161 (184)
Q Consensus 83 ~~lfVgnLp~~~-te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~ 161 (184)
+.|-+.-.++.. +..+|...|.+||.|..|.+-.. --.|.|+|.+..+|-+|. ..++..|+++-
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---------~~~a~vTF~t~aeag~a~-~s~~avlnnr~----- 437 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRF----- 437 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc---------hhhheeeeeccccccchh-ccccceecCce-----
Confidence 344444455555 45889999999999999877432 116899999999997765 47999999997
Q ss_pred eEEEeecC
Q 030012 162 LKIQFAHF 169 (184)
Q Consensus 162 l~V~~a~~ 169 (184)
|+|.|-+.
T Consensus 438 iKl~whnp 445 (526)
T KOG2135|consen 438 IKLFWHNP 445 (526)
T ss_pred eEEEEecC
Confidence 99999765
No 144
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.03 E-value=0.11 Score=44.47 Aligned_cols=65 Identities=15% Similarity=0.089 Sum_probs=52.2
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD 153 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~ 153 (184)
..++++|.+|+..+...++-++|..+|+|...++... ...-+|-++|........|+. ++|.++.
T Consensus 150 irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask-------~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 150 IRRTREVQSLISAAILPESGESFERKGEVSYAHTASK-------SRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc-------CCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 3479999999999999999999999999998877543 223378899998888888875 5666655
No 145
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.80 E-value=1.1 Score=37.20 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=42.5
Q ss_pred EcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 87 VDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 87 VgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
|-+.|+.- -..|...|++||.|++..... .--|-+|.|.+..+|++||. .||..|+|.
T Consensus 202 VfGFppg~-~s~vL~~F~~cG~Vvkhv~~~---------ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 202 VFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS---------NGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred EeccCccc-hhHHHHHHHhhCeeeeeecCC---------CCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 33554433 345677899999998764431 11289999999999999995 788888886
No 146
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=85.48 E-value=0.83 Score=37.71 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=36.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHH
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKC 139 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~ 139 (184)
..-||++||+.++.-.||+..+.+-+.+ -.++.++ -++|-||+.|.+...
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk-------g~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK-------GHFGKCFLHFGNRKG 379 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeee-------cCCcceeEecCCccC
Confidence 3469999999999999999999887653 2233332 235689999988543
No 147
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=78.42 E-value=1.5 Score=36.18 Aligned_cols=90 Identities=22% Similarity=0.312 Sum_probs=52.9
Q ss_pred CCCCCEEEEcCCCCC------------CcHHHHHHhhcCCCCEEEEEEeec------CCCCC-CCCcceEEE--------
Q 030012 79 KGESNLLFVDGLPTD------------CTRREVSHLFRPFVGYREIRVIHK------EPRRT-GDRAMVLCF-------- 131 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~------------~te~~L~~~F~~~G~i~~v~l~~~------~~~~~-~g~~~G~af-------- 131 (184)
.....|||+.+||-. .+|+-|+..|+.||.|..|.|..- .+.+. +-...||+|
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 445678888888731 467789999999999998876431 11111 111334443
Q ss_pred -EEECCHHHHHHHHHHhcCCeeC----CCCCCCCceEEEeecC
Q 030012 132 -VEFDDPKCARTAMDALHGYKFD----DKKPDSPTLKIQFAHF 169 (184)
Q Consensus 132 -V~F~~~~~A~~Ai~~l~g~~~~----g~~~~~~~l~V~~a~~ 169 (184)
|.|-.......||.+|.|.++. ++ ..-..++|+|.++
T Consensus 226 yvqfmeykgfa~amdalr~~k~akk~d~~-ffqanvkvdfdrs 267 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKLAKKGDDG-FFQANVKVDFDRS 267 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchHHhhcCCc-ccccccccccchh
Confidence 3344444556677777775442 22 1223477777653
No 148
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.38 E-value=15 Score=33.27 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=59.0
Q ss_pred CCCCCCEEEEcCCCCC-CcHHHHHHhhcCC----CCEEEEEEeecCC--------CCCCC--------------------
Q 030012 78 KKGESNLLFVDGLPTD-CTRREVSHLFRPF----VGYREIRVIHKEP--------RRTGD-------------------- 124 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~i~~v~l~~~~~--------~~~~g-------------------- 124 (184)
.....++|-|-||.|. +...+|.-+|..| |.|.+|.|...+- ...+.
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3566789999999986 6778999998876 6889988764220 00110
Q ss_pred ----------------CcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 125 ----------------RAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 125 ----------------~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
.-.-||.|+|.+...|.+..+.++|.++.-.
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 1234789999999999999999999999765
No 149
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=77.45 E-value=0.083 Score=45.61 Aligned_cols=77 Identities=13% Similarity=0.311 Sum_probs=63.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
..++++-|.|+|+...++.|..++.+||.+..|..+..++.. -.--|+|...+.+..||..|+|..+....
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et------avvnvty~~~~~~~~ai~kl~g~Q~en~~--- 148 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET------AVVNVTYSAQQQHRQAIHKLNGPQLENQH--- 148 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH------HHHHHHHHHHHHHHHHHHhhcchHhhhhh---
Confidence 346778999999999999999999999999999876543211 13357899999999999999999998876
Q ss_pred CceEEEee
Q 030012 160 PTLKIQFA 167 (184)
Q Consensus 160 ~~l~V~~a 167 (184)
++|.|-
T Consensus 149 --~k~~Yi 154 (584)
T KOG2193|consen 149 --LKVGYI 154 (584)
T ss_pred --hhcccC
Confidence 888884
No 150
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.68 E-value=11 Score=32.61 Aligned_cols=58 Identities=12% Similarity=0.237 Sum_probs=44.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCE-EEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHH
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGY-REIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDA 146 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i-~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~ 146 (184)
.+-.+.|-|-+.|...-.+||..+|+.|++- -.|.|+.+ + .+|..|.+...|..|+..
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd---t-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD---T-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec---c-------eeEEeecchHHHHHHhhc
Confidence 3456789999999999999999999998542 23445432 1 899999999999999853
No 151
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.11 E-value=17 Score=25.85 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=25.1
Q ss_pred CcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHH-HHHHHH
Q 030012 94 CTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKC-ARTAMD 145 (184)
Q Consensus 94 ~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~-A~~Ai~ 145 (184)
.+.++|++.|+.|..++ ++.+... .-+.|+++|+|...-. -..|+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~-----~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK-----QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET-----TEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC-----CCCcEEEEEEECCChHHHHHHHH
Confidence 35578999999997765 4444432 2467899999987444 344443
No 152
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=58.19 E-value=2.9 Score=33.35 Aligned_cols=73 Identities=19% Similarity=0.218 Sum_probs=58.8
Q ss_pred CCCCEEEEcC----CCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 80 GESNLLFVDG----LPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 80 ~~~~~lfVgn----Lp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
....+++.|+ |...++++.+.++|+..+.+..+++-.+.. ++++-+.|+++.-....-.++...++....-+
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d----~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND----GRNRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc----CCccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 3456788888 888899999999999999999988866432 67788999999988888888888887766554
Q ss_pred C
Q 030012 156 K 156 (184)
Q Consensus 156 ~ 156 (184)
+
T Consensus 154 ~ 154 (267)
T KOG4454|consen 154 K 154 (267)
T ss_pred C
Confidence 3
No 153
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=56.50 E-value=27 Score=22.09 Aligned_cols=20 Identities=15% Similarity=0.183 Sum_probs=16.1
Q ss_pred HHHHHhhcCCCCEEEEEEee
Q 030012 97 REVSHLFRPFVGYREIRVIH 116 (184)
Q Consensus 97 ~~L~~~F~~~G~i~~v~l~~ 116 (184)
.+|+++|+.+|.|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999997766543
No 154
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=55.98 E-value=18 Score=31.14 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=52.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEE-EEe-ecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREI-RVI-HKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v-~l~-~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
.-.++-|.+||...+++++.+-...|-.=.+. .+. .+...+ ..-.+.++|.|...++...-.+.++|+.+...+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~--~~~ysrayinFk~~~dv~ef~~~f~g~ifld~K 81 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLR--NHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNK 81 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccch--hhhhhhhhhccccHHHHHHHHhhCCceEEecCC
Confidence 34678899999999999988777776432222 222 111111 223568899999999988888899999998865
No 155
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=51.98 E-value=10 Score=25.76 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=21.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhc
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFR 104 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~ 104 (184)
....++|-|.|||....+++|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34568999999999999999997753
No 156
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=51.27 E-value=28 Score=26.64 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=33.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEee
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIH 116 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~ 116 (184)
.......+++.+++..++.+++...|..+|.+....+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPP 259 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccC
Confidence 345678999999999999999999999999997776654
No 157
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=50.94 E-value=8 Score=14.24 Aligned_cols=6 Identities=50% Similarity=0.960 Sum_probs=4.2
Q ss_pred CCCCCC
Q 030012 3 PGALGL 8 (184)
Q Consensus 3 ~~~~~~ 8 (184)
|++||+
T Consensus 3 py~fgl 8 (8)
T PF08261_consen 3 PYSFGL 8 (8)
T ss_pred cccccC
Confidence 777775
No 158
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=46.05 E-value=13 Score=20.86 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=10.4
Q ss_pred CCCcHHHHHHhhcCCC
Q 030012 92 TDCTRREVSHLFRPFV 107 (184)
Q Consensus 92 ~~~te~~L~~~F~~~G 107 (184)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3688999999998764
No 159
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.05 E-value=3.9 Score=35.84 Aligned_cols=78 Identities=5% Similarity=-0.174 Sum_probs=58.5
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCce
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 162 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l 162 (184)
.+.|+..|+..++++++.-+|+.||-|..+.+.... .++..+..+|++-.. ..+..++..+--..+.+.. +
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~---~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~-----~ 74 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYV---NGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQ-----D 74 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccc---cCCcceeeeeeeeec-cCcccccCHHHHhhhhhhh-----h
Confidence 345677889999999999999999998888776533 346677888988654 5667777766666666766 7
Q ss_pred EEEeecC
Q 030012 163 KIQFAHF 169 (184)
Q Consensus 163 ~V~~a~~ 169 (184)
++..+..
T Consensus 75 r~~~~~~ 81 (572)
T KOG4365|consen 75 RKAVSPS 81 (572)
T ss_pred hhhcCch
Confidence 7777764
No 160
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=38.09 E-value=1.2e+02 Score=20.28 Aligned_cols=45 Identities=18% Similarity=0.106 Sum_probs=32.4
Q ss_pred HHHHHHhhcCC-CCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHh
Q 030012 96 RREVSHLFRPF-VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL 147 (184)
Q Consensus 96 e~~L~~~F~~~-G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l 147 (184)
.+.++++++++ |.++++.+.. |..-.+..+++.|.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~-------G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL-------GEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec-------CCCCEEEEEEcCCHHHHHHHHHHH
Confidence 35577778776 5677777765 444458899999999988876444
No 161
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=33.49 E-value=30 Score=27.91 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=29.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEE
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREI 112 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v 112 (184)
.....+||+-|+|..+|++.|.++.+++|.+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 4566799999999999999999999999865544
No 162
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=33.20 E-value=96 Score=20.89 Aligned_cols=49 Identities=6% Similarity=-0.003 Sum_probs=30.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEEC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFD 135 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~ 135 (184)
...-+|||+++..+.|.-.+.+.+..++= ++-++.... ...||.|-++.
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~~-----neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSDN-----NEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEccC-----CCCCEEEEEeC
Confidence 34569999999888877666666544322 233333222 24579998874
No 163
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=30.20 E-value=83 Score=24.43 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=49.7
Q ss_pred CCCEEEEcCCCCCCcH-----HHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 81 ESNLLFVDGLPTDCTR-----REVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te-----~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
-..++++-+++.++-. ...+.+|.+|-+.....+++ +.++--|.|.+.+.|..|...+++..+.+.
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr---------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR---------SFRRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH---------hhceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 3455666666654321 22345666665554444443 233667899999999999999999999998
Q ss_pred CCCCCceEEEeec
Q 030012 156 KPDSPTLKIQFAH 168 (184)
Q Consensus 156 ~~~~~~l~V~~a~ 168 (184)
. .++.-|+.
T Consensus 80 ~----~~k~yfaQ 88 (193)
T KOG4019|consen 80 N----ELKLYFAQ 88 (193)
T ss_pred c----eEEEEEcc
Confidence 3 27777764
No 164
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=29.95 E-value=99 Score=25.83 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=44.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecC----CCCCCCCcceEEEEEECCHHHHHH
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKE----PRRTGDRAMVLCFVEFDDPKCART 142 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~----~~~~~g~~~G~afV~F~~~~~A~~ 142 (184)
.+.|...|+..+++-.++-.-|-+||.|++|.++.+. .+....+..-...+.|-+.+.+..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 4567788999888888888899999999999998754 001112333467888988776543
No 165
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=29.73 E-value=2.2e+02 Score=25.14 Aligned_cols=80 Identities=15% Similarity=0.292 Sum_probs=54.4
Q ss_pred CCCCCCCCEEEEcCCCCC-CcHHHHHHhhcCC----CCEEEEEEeecCCCC-----------------------------
Q 030012 76 PLKKGESNLLFVDGLPTD-CTRREVSHLFRPF----VGYREIRVIHKEPRR----------------------------- 121 (184)
Q Consensus 76 ~~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~i~~v~l~~~~~~~----------------------------- 121 (184)
|....+.+.|-|-||.|+ +...+|..+|+.| |.+..|.|...+-++
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~ 219 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFG 219 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccC
Confidence 334566789999999985 5778888888765 566666654311000
Q ss_pred --------CCC------Cc-------------------ceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 122 --------TGD------RA-------------------MVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 122 --------~~g------~~-------------------~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
.-| -. .-||.|++.+...+......++|.++...
T Consensus 220 ~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s 286 (622)
T COG5638 220 DDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS 286 (622)
T ss_pred CccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc
Confidence 000 01 23788999999999999899999888764
No 166
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=28.79 E-value=18 Score=25.75 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=18.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCC-CCEEEEEE
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPF-VGYREIRV 114 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~-G~i~~v~l 114 (184)
.....||||++|..............| |.|.++.+
T Consensus 90 ~~~~~lyvGG~p~~~~~~~~~~~~~~f~GCi~~~~i 125 (131)
T PF00054_consen 90 DVDGPLYVGGLPSSSSRPRPLPISPGFKGCIRNLSI 125 (131)
T ss_dssp EECSEEEESSSSTTTGCGSSCSCCSB-EEEEEEEEE
T ss_pred ccccCEEEccCCchhhcccccccCCCeeEEEEEeEE
Confidence 445669999999322222222222233 56666655
No 167
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=26.77 E-value=1.8e+02 Score=21.23 Aligned_cols=47 Identities=9% Similarity=0.267 Sum_probs=24.0
Q ss_pred CCcHHHHHHhhcC-CC--CEEEEEEeecCCCCCCCCcceEEEEEECCHHHH
Q 030012 93 DCTRREVSHLFRP-FV--GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCA 140 (184)
Q Consensus 93 ~~te~~L~~~F~~-~G--~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A 140 (184)
..+..||++-+.. |+ +...|.+..-.+.--++++.|||.| |++.+.+
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~ 84 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAAL 84 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHH
Confidence 5677788777754 34 1122222222223334677787766 4444443
No 168
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.48 E-value=2.6e+02 Score=21.04 Aligned_cols=57 Identities=5% Similarity=0.186 Sum_probs=37.0
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCC---CCEEEEEEeecCCCC------CCCCcce-EEEEEECCHHH
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPF---VGYREIRVIHKEPRR------TGDRAMV-LCFVEFDDPKC 139 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~---G~i~~v~l~~~~~~~------~~g~~~G-~afV~F~~~~~ 139 (184)
.+||+.-++..++|++-++..++= +++.++.+-+..... .+...+. |-+|.|++-..
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 799999999999999988888754 556666654311000 0011123 78899987543
No 169
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=25.41 E-value=1.4e+02 Score=19.67 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=21.8
Q ss_pred CcceEEEEEECCHHHHHHHHHHhcCCe
Q 030012 125 RAMVLCFVEFDDPKCARTAMDALHGYK 151 (184)
Q Consensus 125 ~~~G~afV~F~~~~~A~~Ai~~l~g~~ 151 (184)
..+||-|||=.+..+...|++.+.+..
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 467899999999999999998776543
No 170
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=24.92 E-value=1.6e+02 Score=21.19 Aligned_cols=45 Identities=9% Similarity=0.217 Sum_probs=24.6
Q ss_pred CCcHHHHHHhhcC-C---CCEEEEEEeecCCCCCCCCcceEEEEEECCHHHH
Q 030012 93 DCTRREVSHLFRP-F---VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCA 140 (184)
Q Consensus 93 ~~te~~L~~~F~~-~---G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A 140 (184)
+++.+||++-+.+ | -+.+.+ ..-.+.--+|++.|||.| |.+.+.|
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~v--fgfrt~~GggkstgfalI-Ydsve~a 82 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFV--FGFRTHFGGGKSTGFALI-YDSVEYA 82 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEE--EEeeeccCCcccceeeee-eehHHHH
Confidence 5677777766654 2 222222 222234456788899876 4444443
No 171
>PHA01632 hypothetical protein
Probab=24.21 E-value=75 Score=19.66 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=15.7
Q ss_pred EcCCCCCCcHHHHHHhhcC
Q 030012 87 VDGLPTDCTRREVSHLFRP 105 (184)
Q Consensus 87 VgnLp~~~te~~L~~~F~~ 105 (184)
|..+|..-||++|+.++.+
T Consensus 21 ieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 21 IEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred hhhcCCCCCHHHHHHHHHH
Confidence 4688999999999987654
No 172
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=23.52 E-value=1.5e+02 Score=20.54 Aligned_cols=50 Identities=6% Similarity=0.013 Sum_probs=28.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDD 136 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~ 136 (184)
...-+|||+++..+.+.--+.+-+.+++ -++.++...+ .-.||.|-++.+
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~-----~eqG~~~~t~G~ 75 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATN-----TESGFEFQTFGE 75 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCC-----CCCCcEEEecCC
Confidence 3457999999988776544444443332 1233333221 223799988765
No 173
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=23.48 E-value=2e+02 Score=18.08 Aligned_cols=44 Identities=14% Similarity=0.020 Sum_probs=29.5
Q ss_pred HHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhc
Q 030012 97 REVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH 148 (184)
Q Consensus 97 ~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~ 148 (184)
+++.+.+..+| +...++.- . -.-++.|+-+.+.+.++++.+.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sG-----s--G~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSG-----S--GGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEET-----T--SSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCC-----C--CCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677777888 45555532 1 013488888889999988887763
No 174
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=23.27 E-value=17 Score=30.87 Aligned_cols=47 Identities=11% Similarity=-0.008 Sum_probs=34.9
Q ss_pred HHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Q 030012 97 REVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY 150 (184)
Q Consensus 97 ~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~ 150 (184)
..+-+++.+.|+|..-.+.+ -.+.|.+||-.-.+++++++++.|.+.
T Consensus 276 p~iF~~i~~~G~v~~~EM~r-------tFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 276 PPIFKWLQKAGNVEREEMYR-------TFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cHHHHHHHHhcCCCHHHHHH-------HhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 45666667778766544433 145679999999999999999999864
No 175
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=22.33 E-value=85 Score=28.35 Aligned_cols=37 Identities=22% Similarity=0.432 Sum_probs=31.9
Q ss_pred eEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceEEEeecC
Q 030012 128 VLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAHF 169 (184)
Q Consensus 128 G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~V~~a~~ 169 (184)
.+++++|++.+.+.+|+..++|....+.. ++++.+..
T Consensus 64 ~~~~~~~et~~~~~ka~~~v~g~~~k~~~-----~~~~~~~~ 100 (534)
T KOG2187|consen 64 KYAYVTFETPSDAGKAINLVDGLLYKGFI-----LRVQLGAT 100 (534)
T ss_pred CceEEEEeccchhhhHHHHHhhhhhhcch-----hhhhhccc
Confidence 49999999999999999999999888876 67766654
No 176
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=21.09 E-value=1.4e+02 Score=24.43 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=23.8
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEE
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREI 112 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v 112 (184)
.....|+|||++++..-+..+++..-.+...
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~ 125 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDM 125 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceE
Confidence 3466799999999999999998775444333
No 177
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=20.84 E-value=31 Score=22.13 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=18.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRP 105 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~ 105 (184)
..++++|||.+|..+-++.=+.++..
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k~ 50 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYKS 50 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHHH
Confidence 45789999999987766654444433
No 178
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=20.84 E-value=2.7e+02 Score=18.58 Aligned_cols=56 Identities=7% Similarity=0.069 Sum_probs=37.8
Q ss_pred EEEcCCCCCCcHHHHHHhhcC-CC-CEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHH
Q 030012 85 LFVDGLPTDCTRREVSHLFRP-FV-GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDA 146 (184)
Q Consensus 85 lfVgnLp~~~te~~L~~~F~~-~G-~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~ 146 (184)
-|+--.+..++..+|++.++. |+ .|.+|+......+ .==|||++....+|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~------~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG------EKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC------cEEEEEEeCCCCcHHHHHHh
Confidence 444456789999999988887 43 4566666543221 11589999988888776543
No 179
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=20.79 E-value=15 Score=33.22 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=52.3
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
.++||+.|++++++-.+|..+++.+-.+..+-+.....- .+..-+..|+|.-.-....|+.+||+..+.-.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~ae---k~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAE---KNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHH---HHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 457999999999999999999999877766655332111 11233667899888888888889998776554
No 180
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.64 E-value=2.6e+02 Score=18.31 Aligned_cols=56 Identities=7% Similarity=0.078 Sum_probs=37.5
Q ss_pred EEEEcCCCCCCcHHHHHHhhcC-CC-CEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHH
Q 030012 84 LLFVDGLPTDCTRREVSHLFRP-FV-GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMD 145 (184)
Q Consensus 84 ~lfVgnLp~~~te~~L~~~F~~-~G-~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~ 145 (184)
.-|+-..+..++..+|++.++. |+ .|.+|+......+ .==|||++.....|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~------~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG------EKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC------ceEEEEEECCCCcHHHHHH
Confidence 3556667889999999988877 43 4566665543211 1158999988777776543
No 181
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=20.62 E-value=1.3e+02 Score=17.47 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=22.3
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEE
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYRE 111 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~ 111 (184)
..+|+.+.....+.++|++++..+|.-..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~ 30 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVT 30 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEe
Confidence 45677776667888999999999987443
No 182
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.35 E-value=1.2e+02 Score=19.31 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=20.8
Q ss_pred EEEEEECCHHHHHHHHHHhcCCeeC
Q 030012 129 LCFVEFDDPKCARTAMDALHGYKFD 153 (184)
Q Consensus 129 ~afV~F~~~~~A~~Ai~~l~g~~~~ 153 (184)
+.+|.|.+...|.+|-+.|....+.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCc
Confidence 6899999999999998888765543
Done!