Query 030012
Match_columns 184
No_of_seqs 196 out of 1735
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 11:14:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 7E-23 2.4E-27 142.3 10.7 82 80-169 17-98 (99)
2 2dnh_A Bruno-like 5, RNA bindi 99.9 5.7E-21 2E-25 133.1 14.6 88 79-175 12-102 (105)
3 3s8s_A Histone-lysine N-methyl 99.9 2E-21 6.8E-26 137.4 11.7 83 80-170 4-86 (110)
4 2dnz_A Probable RNA-binding pr 99.9 5.7E-21 1.9E-25 130.7 13.6 88 80-175 3-90 (95)
5 2cq0_A Eukaryotic translation 99.9 4.3E-21 1.5E-25 133.4 13.0 90 78-175 11-100 (103)
6 2dnm_A SRP46 splicing factor; 99.9 4.9E-21 1.7E-25 133.1 11.8 90 78-175 9-98 (103)
7 2dgs_A DAZ-associated protein 99.9 1.1E-20 3.9E-25 130.4 13.6 89 78-175 6-94 (99)
8 2dgo_A Cytotoxic granule-assoc 99.9 1.2E-20 4.1E-25 133.6 13.8 90 78-175 11-100 (115)
9 1x5u_A Splicing factor 3B subu 99.9 8.5E-21 2.9E-25 132.2 12.7 89 78-174 11-99 (105)
10 2do4_A Squamous cell carcinoma 99.9 1.3E-20 4.4E-25 130.3 13.5 85 79-172 14-98 (100)
11 2cpz_A CUG triplet repeat RNA- 99.9 7.4E-21 2.5E-25 134.8 12.4 89 78-174 21-109 (115)
12 2la6_A RNA-binding protein FUS 99.9 1E-20 3.6E-25 130.6 12.4 83 78-168 9-99 (99)
13 2fy1_A RNA-binding motif prote 99.9 6.8E-21 2.3E-25 135.7 11.7 86 79-173 4-89 (116)
14 2lxi_A RNA-binding protein 10; 99.9 3.6E-22 1.2E-26 136.5 4.8 85 82-174 1-87 (91)
15 1x4a_A Splicing factor, argini 99.9 1.5E-20 5.1E-25 132.0 13.1 87 78-175 18-104 (109)
16 4f25_A Polyadenylate-binding p 99.8 5.2E-21 1.8E-25 136.0 10.5 81 81-171 4-84 (115)
17 2d9p_A Polyadenylate-binding p 99.8 2.9E-20 1E-24 129.1 14.1 87 78-174 11-97 (103)
18 1x5s_A Cold-inducible RNA-bind 99.8 9.4E-21 3.2E-25 131.4 11.5 89 79-175 9-97 (102)
19 2dgv_A HnRNP M, heterogeneous 99.8 1.3E-20 4.4E-25 128.2 11.7 87 79-175 5-91 (92)
20 2lkz_A RNA-binding protein 5; 99.8 1.2E-21 4.2E-26 135.1 6.6 82 80-169 7-94 (95)
21 3bs9_A Nucleolysin TIA-1 isofo 99.8 8.3E-21 2.8E-25 127.8 10.3 82 80-169 4-85 (87)
22 1whw_A Hypothetical protein ri 99.8 1.3E-20 4.5E-25 129.9 11.6 87 79-173 5-91 (99)
23 2cph_A RNA binding motif prote 99.8 2.3E-20 8E-25 130.3 12.9 90 78-174 11-101 (107)
24 1x5t_A Splicing factor 3B subu 99.8 4.8E-21 1.7E-25 131.3 9.2 88 80-175 3-91 (96)
25 1u6f_A Tcubp1, RNA-binding pro 99.8 2.4E-20 8E-25 136.3 13.2 90 78-175 38-127 (139)
26 2khc_A Testis-specific RNP-typ 99.8 2E-20 7E-25 133.0 12.4 83 78-168 36-118 (118)
27 3mdf_A Peptidyl-prolyl CIS-tra 99.8 7.2E-21 2.5E-25 127.5 9.4 82 79-168 4-85 (85)
28 2dgp_A Bruno-like 4, RNA bindi 99.8 1.4E-20 4.9E-25 131.3 11.1 90 78-175 9-101 (106)
29 1x4h_A RNA-binding protein 28; 99.8 3.1E-20 1.1E-24 130.5 12.9 89 78-174 11-105 (111)
30 2cqc_A Arginine/serine-rich sp 99.8 1.6E-20 5.6E-25 128.3 11.1 83 79-169 12-94 (95)
31 2cpf_A RNA binding motif prote 99.8 1.5E-20 5.3E-25 129.4 10.8 90 80-174 3-92 (98)
32 2div_A TRNA selenocysteine ass 99.8 1.6E-20 5.4E-25 129.5 10.9 91 79-173 6-97 (99)
33 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1E-20 3.5E-25 131.1 10.0 89 79-175 9-97 (102)
34 2e5h_A Zinc finger CCHC-type a 99.8 1.9E-20 6.5E-25 127.8 11.1 82 79-168 13-94 (94)
35 3md1_A Nuclear and cytoplasmic 99.8 2.5E-20 8.4E-25 124.3 11.4 80 83-170 2-81 (83)
36 2x1f_A MRNA 3'-END-processing 99.8 1.3E-20 4.5E-25 129.4 10.2 83 81-171 1-83 (96)
37 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.4E-20 1.2E-24 128.8 12.3 88 78-175 11-98 (103)
38 2do0_A HnRNP M, heterogeneous 99.8 7.1E-20 2.4E-24 129.3 14.0 84 79-171 12-95 (114)
39 2dng_A Eukaryotic translation 99.8 4.5E-20 1.5E-24 128.3 12.8 87 78-174 11-97 (103)
40 3p5t_L Cleavage and polyadenyl 99.8 3.3E-21 1.1E-25 131.1 6.8 83 83-173 2-86 (90)
41 1p27_B RNA-binding protein 8A; 99.8 2.2E-20 7.4E-25 130.4 11.1 84 79-170 20-103 (106)
42 2ywk_A Putative RNA-binding pr 99.8 1.2E-20 4.3E-25 129.0 9.6 83 78-169 12-94 (95)
43 1wi8_A EIF-4B, eukaryotic tran 99.8 3.7E-20 1.3E-24 129.0 11.9 88 78-174 11-98 (104)
44 2jrs_A RNA-binding protein 39; 99.8 4.3E-20 1.5E-24 130.0 12.3 85 78-170 22-106 (108)
45 3ex7_B RNA-binding protein 8A; 99.8 1.7E-20 5.8E-25 134.9 10.1 85 78-170 18-102 (126)
46 2cq3_A RNA-binding protein 9; 99.8 9.8E-20 3.3E-24 126.5 13.5 87 78-174 11-97 (103)
47 2cpe_A RNA-binding protein EWS 99.8 3.5E-20 1.2E-24 130.8 11.4 89 78-174 11-107 (113)
48 4a8x_A RNA-binding protein wit 99.8 1.6E-20 5.6E-25 126.4 9.2 85 81-172 3-87 (88)
49 2cqd_A RNA-binding region cont 99.8 5.7E-20 1.9E-24 130.4 12.4 85 78-171 13-97 (116)
50 2dhg_A TRNA selenocysteine ass 99.8 4.2E-20 1.4E-24 128.5 11.3 87 78-173 5-93 (104)
51 2m2b_A RNA-binding protein 10; 99.8 1.5E-20 5.2E-25 136.5 9.2 89 78-175 19-113 (131)
52 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.5E-20 1.9E-24 137.0 12.3 87 78-172 35-121 (156)
53 1oo0_B CG8781-PA, drosophila Y 99.8 2.2E-20 7.7E-25 131.2 9.5 87 78-172 22-108 (110)
54 2cpi_A CCR4-NOT transcription 99.8 5E-20 1.7E-24 130.0 11.3 88 79-171 12-102 (111)
55 2kxn_B Transformer-2 protein h 99.8 4.1E-20 1.4E-24 134.2 11.0 86 78-171 42-127 (129)
56 3ulh_A THO complex subunit 4; 99.8 5.1E-20 1.7E-24 128.7 11.0 82 78-168 25-106 (107)
57 3ns6_A Eukaryotic translation 99.8 1.1E-20 3.7E-25 131.2 7.1 82 80-169 4-92 (100)
58 2cqp_A RNA-binding protein 12; 99.8 2.5E-20 8.5E-25 128.3 8.9 85 79-171 12-96 (98)
59 1x4e_A RNA binding motif, sing 99.8 1.2E-20 4.1E-25 126.6 6.6 82 80-169 3-84 (85)
60 1sjq_A Polypyrimidine tract-bi 99.8 3.5E-20 1.2E-24 129.9 8.5 82 79-174 13-96 (105)
61 1x5o_A RNA binding motif, sing 99.8 5.6E-19 1.9E-23 124.8 14.8 89 79-171 22-113 (114)
62 2dgx_A KIAA0430 protein; RRM d 99.8 7E-20 2.4E-24 126.0 9.8 84 79-173 6-93 (96)
63 2dnq_A RNA-binding protein 4B; 99.8 1.9E-19 6.5E-24 122.1 11.7 81 79-175 5-85 (90)
64 1p1t_A Cleavage stimulation fa 99.8 2.1E-20 7.1E-25 129.9 7.0 85 79-171 5-89 (104)
65 1x4d_A Matrin 3; structural ge 99.8 1E-19 3.5E-24 127.1 10.2 79 79-171 12-93 (102)
66 2dh8_A DAZ-associated protein 99.8 5.2E-20 1.8E-24 128.3 8.7 88 78-174 12-99 (105)
67 1s79_A Lupus LA protein; RRM, 99.8 6E-20 2.1E-24 128.4 9.0 81 79-169 8-88 (103)
68 3ucg_A Polyadenylate-binding p 99.8 8.4E-20 2.9E-24 123.3 9.4 80 82-170 6-85 (89)
69 2a3j_A U1 small nuclear ribonu 99.8 8.4E-20 2.9E-24 132.3 10.0 82 79-171 26-111 (127)
70 2e5j_A Methenyltetrahydrofolat 99.8 1.6E-19 5.3E-24 124.3 10.9 80 79-171 16-95 (97)
71 2cq1_A PTB-like protein L; RRM 99.8 4E-19 1.4E-23 123.8 13.0 82 79-174 12-95 (101)
72 3n9u_C Cleavage and polyadenyl 99.8 7.6E-20 2.6E-24 136.9 9.9 82 80-169 53-136 (156)
73 2cpx_A Hypothetical protein FL 99.8 1.6E-19 5.4E-24 127.7 11.0 85 79-175 22-110 (115)
74 2fc9_A NCL protein; structure 99.8 2E-19 6.8E-24 124.5 11.3 84 79-174 12-95 (101)
75 2dgw_A Probable RNA-binding pr 99.8 2E-19 6.9E-24 122.2 11.1 81 79-170 7-87 (91)
76 1wez_A HnRNP H', FTP-3, hetero 99.8 1.6E-19 5.6E-24 125.8 10.8 86 79-175 12-97 (102)
77 1wex_A Hypothetical protein (r 99.8 3.7E-19 1.3E-23 124.6 12.5 82 79-174 12-95 (104)
78 2jwn_A Embryonic polyadenylate 99.8 1E-19 3.5E-24 130.4 9.7 86 81-175 35-120 (124)
79 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.3E-19 4.4E-24 136.4 10.7 88 78-173 68-155 (165)
80 2lea_A Serine/arginine-rich sp 99.8 4.7E-20 1.6E-24 134.8 8.0 90 78-175 43-132 (135)
81 3s7r_A Heterogeneous nuclear r 99.8 1.6E-19 5.6E-24 121.5 10.1 81 78-167 7-87 (87)
82 3r27_A HnRNP L, heterogeneous 99.8 1.2E-19 4.1E-24 126.1 9.6 78 79-170 18-97 (100)
83 1x4c_A Splicing factor, argini 99.8 2.6E-19 8.7E-24 125.7 11.4 83 79-171 12-94 (108)
84 2cqg_A TDP-43, TAR DNA-binding 99.8 4.8E-19 1.6E-23 123.0 12.7 86 78-173 11-96 (103)
85 1x4b_A Heterogeneous nuclear r 99.8 7.1E-20 2.4E-24 129.9 8.6 87 79-174 24-110 (116)
86 2fc8_A NCL protein; structure 99.8 4.1E-19 1.4E-23 123.0 12.2 86 78-174 11-96 (102)
87 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.9E-20 1.7E-24 127.7 7.4 83 78-169 15-97 (100)
88 2ad9_A Polypyrimidine tract-bi 99.8 2.6E-19 8.9E-24 128.2 11.4 83 79-175 28-112 (119)
89 2kn4_A Immunoglobulin G-bindin 99.8 2E-19 6.9E-24 133.9 11.1 88 79-174 67-154 (158)
90 1why_A Hypothetical protein ri 99.8 4.5E-19 1.6E-23 121.9 12.0 80 79-172 14-95 (97)
91 2kt5_A RNA and export factor-b 99.8 1.2E-18 4E-23 125.0 14.5 86 78-172 31-116 (124)
92 2cq4_A RNA binding motif prote 99.8 6.8E-20 2.3E-24 129.6 7.7 82 79-169 22-103 (114)
93 2jvr_A Nucleolar protein 3; RN 99.8 4.3E-20 1.5E-24 130.9 6.4 80 80-171 26-106 (111)
94 2rs2_A Musashi-1, RNA-binding 99.8 1.6E-19 5.3E-24 127.2 9.3 86 78-172 21-106 (109)
95 2ek1_A RNA-binding protein 12; 99.8 5.7E-20 1.9E-24 125.7 6.7 82 80-169 13-94 (95)
96 3lqv_A PRE-mRNA branch site pr 99.8 3.3E-19 1.1E-23 126.1 10.7 81 79-170 5-85 (115)
97 2dgt_A RNA-binding protein 30; 99.8 4.5E-19 1.5E-23 120.8 10.8 82 78-175 6-87 (92)
98 2nlw_A Eukaryotic translation 99.8 1.7E-19 6E-24 126.0 8.9 81 79-169 12-99 (105)
99 2mss_A Protein (musashi1); RNA 99.8 7.7E-20 2.6E-24 119.8 6.6 75 84-167 1-75 (75)
100 2ytc_A PRE-mRNA-splicing facto 99.8 2.9E-19 9.9E-24 119.7 9.6 77 78-168 8-85 (85)
101 1wf1_A RNA-binding protein RAL 99.8 4E-19 1.4E-23 124.9 10.5 80 79-174 24-104 (110)
102 2cpj_A Non-POU domain-containi 99.8 6.3E-19 2.1E-23 121.6 11.2 81 79-173 12-92 (99)
103 2err_A Ataxin-2-binding protei 99.8 1.9E-19 6.6E-24 126.7 8.7 82 78-169 25-106 (109)
104 2wbr_A GW182, gawky, LD47780P; 99.8 1.5E-19 5E-24 122.4 7.4 75 80-168 5-79 (89)
105 1nu4_A U1A RNA binding domain; 99.8 1.4E-19 4.7E-24 124.2 7.4 83 79-172 5-91 (97)
106 2jvo_A Nucleolar protein 3; nu 99.8 3.2E-19 1.1E-23 125.5 9.3 80 78-173 27-106 (108)
107 2dis_A Unnamed protein product 99.8 3.5E-19 1.2E-23 124.8 9.5 86 80-172 6-94 (109)
108 2dnp_A RNA-binding protein 14; 99.8 5.3E-19 1.8E-23 119.9 10.1 80 79-174 6-85 (90)
109 2cpd_A Apobec-1 stimulating pr 99.8 1.4E-18 4.7E-23 119.9 12.3 80 79-174 12-93 (99)
110 1wel_A RNA-binding protein 12; 99.8 2.3E-19 7.8E-24 128.9 8.5 83 78-169 21-103 (124)
111 2kvi_A Nuclear polyadenylated 99.8 4.9E-19 1.7E-23 121.6 9.5 83 79-177 7-90 (96)
112 2dgu_A Heterogeneous nuclear r 99.8 7.1E-19 2.4E-23 122.3 10.2 80 79-174 8-87 (103)
113 1x4g_A Nucleolysin TIAR; struc 99.8 6.7E-19 2.3E-23 123.6 9.9 82 79-174 22-103 (109)
114 1wg5_A Heterogeneous nuclear r 99.8 1.1E-18 3.6E-23 121.8 10.8 81 79-169 12-93 (104)
115 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 6.4E-19 2.2E-23 128.4 10.1 81 79-167 60-140 (140)
116 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.6E-19 5.4E-24 118.7 6.2 76 83-167 1-76 (77)
117 2xnq_A Nuclear polyadenylated 99.8 8.5E-19 2.9E-23 120.9 10.2 78 78-171 18-96 (97)
118 1x4f_A Matrin 3; structural ge 99.8 7.1E-19 2.4E-23 124.7 9.9 80 79-172 22-104 (112)
119 2hvz_A Splicing factor, argini 99.8 4.5E-19 1.6E-23 122.7 8.5 76 83-171 1-76 (101)
120 2db1_A Heterogeneous nuclear r 99.8 3.7E-19 1.3E-23 127.1 8.2 80 79-168 14-96 (118)
121 2ki2_A SS-DNA binding protein 99.8 6.9E-20 2.4E-24 124.2 4.1 81 83-172 2-82 (90)
122 2krb_A Eukaryotic translation 99.8 2.2E-19 7.5E-24 119.6 6.3 73 82-164 1-80 (81)
123 2la4_A Nuclear and cytoplasmic 99.8 2.7E-19 9.2E-24 123.8 6.8 77 79-169 24-100 (101)
124 3q2s_C Cleavage and polyadenyl 99.8 4.5E-19 1.5E-23 140.4 8.9 80 81-168 67-148 (229)
125 2cpy_A RNA-binding protein 12; 99.8 4.7E-19 1.6E-23 125.6 7.7 81 79-169 12-93 (114)
126 1fjc_A Nucleolin RBD2, protein 99.8 8E-19 2.7E-23 120.2 8.6 82 79-173 13-94 (96)
127 1x5p_A Negative elongation fac 99.8 3.4E-18 1.2E-22 117.5 11.7 80 79-174 12-91 (97)
128 2cqh_A IGF-II mRNA-binding pro 99.8 7.4E-19 2.5E-23 119.8 8.2 81 79-174 5-87 (93)
129 2hgl_A HNRPF protein, heteroge 99.8 5.3E-19 1.8E-23 129.5 8.0 80 79-168 41-123 (136)
130 1fj7_A Nucleolin RBD1, protein 99.8 9.2E-20 3.2E-24 126.2 3.7 86 79-174 14-99 (101)
131 1sjr_A Polypyrimidine tract-bi 99.8 2.5E-18 8.7E-23 129.3 11.3 79 81-171 45-125 (164)
132 1whx_A Hypothetical protein ri 99.8 9.7E-19 3.3E-23 123.6 8.5 77 80-170 8-84 (111)
133 2lcw_A RNA-binding protein FUS 99.6 2.4E-20 8.1E-25 132.5 0.0 87 79-173 4-98 (116)
134 2i2y_A Fusion protein consists 99.8 1.8E-18 6.2E-23 127.9 10.2 81 78-171 69-149 (150)
135 3egn_A RNA-binding protein 40; 99.8 1.2E-18 4E-23 128.0 8.0 85 79-174 42-134 (143)
136 2dnn_A RNA-binding protein 12; 99.8 1.4E-18 4.9E-23 122.6 8.0 78 80-168 14-91 (109)
137 2lmi_A GRSF-1, G-rich sequence 99.8 8E-19 2.7E-23 123.0 6.5 82 78-169 7-91 (107)
138 3zzy_A Polypyrimidine tract-bi 99.8 6.3E-18 2.2E-22 122.7 11.3 76 83-171 29-107 (130)
139 2hgn_A Heterogeneous nuclear r 99.8 4.3E-19 1.5E-23 130.5 4.8 86 79-175 43-128 (139)
140 4f02_A Polyadenylate-binding p 99.8 5.2E-18 1.8E-22 132.2 11.0 84 79-170 12-95 (213)
141 3beg_B Splicing factor, argini 99.8 4.8E-18 1.6E-22 120.7 9.6 80 80-169 14-93 (115)
142 1iqt_A AUF1, heterogeneous nuc 99.7 4.8E-19 1.6E-23 115.9 3.9 75 84-167 1-75 (75)
143 2f3j_A RNA and export factor b 99.7 3.3E-18 1.1E-22 130.4 9.1 84 78-170 84-167 (177)
144 1wg1_A KIAA1579 protein, homol 99.7 3.7E-18 1.3E-22 115.4 8.1 76 80-170 3-78 (88)
145 2bz2_A Negative elongation fac 99.7 5E-18 1.7E-22 121.8 9.2 79 79-173 36-114 (121)
146 3md3_A Nuclear and cytoplasmic 99.7 2.3E-17 7.8E-22 122.2 12.1 82 79-168 84-165 (166)
147 2xs2_A Deleted in azoospermia- 99.7 1.6E-18 5.4E-23 120.1 5.4 80 79-169 6-85 (102)
148 1fxl_A Paraneoplastic encephal 99.7 1.7E-17 5.8E-22 123.0 11.3 82 82-171 2-83 (167)
149 2e5i_A Heterogeneous nuclear r 99.7 3.4E-17 1.2E-21 118.1 12.5 80 80-171 21-103 (124)
150 2qfj_A FBP-interacting repress 99.7 2.4E-17 8.2E-22 127.5 12.6 86 80-173 123-208 (216)
151 1b7f_A Protein (SXL-lethal pro 99.7 1.1E-17 3.9E-22 124.3 10.2 84 81-172 2-85 (168)
152 2e44_A Insulin-like growth fac 99.7 1.5E-17 5E-22 113.9 10.0 80 79-170 12-92 (96)
153 2cq2_A Hypothetical protein LO 99.7 8.2E-18 2.8E-22 119.5 8.4 77 79-169 22-105 (114)
154 2yh0_A Splicing factor U2AF 65 99.7 4.2E-17 1.4E-21 124.5 12.4 86 79-172 111-196 (198)
155 3pgw_S U1-70K; protein-RNA com 99.7 2.4E-17 8.3E-22 141.7 12.2 83 79-169 99-181 (437)
156 2dha_A FLJ20171 protein; RRM d 99.7 4.3E-18 1.5E-22 122.6 6.3 79 80-168 21-103 (123)
157 3tyt_A Heterogeneous nuclear r 99.7 2.6E-17 8.8E-22 128.2 10.6 77 81-170 3-80 (205)
158 2e5g_A U6 snRNA-specific termi 99.7 2.9E-17 9.9E-22 112.2 9.6 78 80-171 6-83 (94)
159 2hgm_A HNRPF protein, heteroge 99.7 1E-17 3.6E-22 121.1 7.6 79 79-168 39-119 (126)
160 4f02_A Polyadenylate-binding p 99.7 2.6E-17 9E-22 128.2 10.1 79 81-169 102-180 (213)
161 3md3_A Nuclear and cytoplasmic 99.7 2.8E-17 9.6E-22 121.7 9.7 81 83-172 1-81 (166)
162 3nmr_A Cugbp ELAV-like family 99.7 2.7E-17 9.1E-22 123.0 9.6 84 79-168 92-175 (175)
163 3pgw_A U1-A; protein-RNA compl 99.7 5.6E-17 1.9E-21 130.8 11.9 82 79-171 6-91 (282)
164 2g4b_A Splicing factor U2AF 65 99.7 4.6E-17 1.6E-21 121.6 10.5 81 80-168 92-172 (172)
165 3d2w_A TAR DNA-binding protein 99.7 2.9E-17 1E-21 111.5 8.4 76 78-170 7-84 (89)
166 1b7f_A Protein (SXL-lethal pro 99.7 1.6E-16 5.3E-21 118.2 12.7 81 79-167 86-168 (168)
167 1l3k_A Heterogeneous nuclear r 99.7 6.4E-17 2.2E-21 123.2 10.4 84 80-172 102-185 (196)
168 1l3k_A Heterogeneous nuclear r 99.7 4.8E-17 1.6E-21 124.0 9.6 84 78-170 9-92 (196)
169 2diu_A KIAA0430 protein; struc 99.7 6E-17 2E-21 110.6 8.9 74 80-171 6-85 (96)
170 2dnl_A Cytoplasmic polyadenyla 99.7 2.4E-17 8.2E-22 116.7 7.2 67 80-147 6-72 (114)
171 2j8a_A Histone-lysine N-methyl 99.7 1.9E-17 6.6E-22 119.3 6.6 80 83-170 3-96 (136)
172 2hzc_A Splicing factor U2AF 65 99.7 2.7E-17 9.3E-22 110.4 6.6 72 80-166 4-86 (87)
173 1wf0_A TDP-43, TAR DNA-binding 99.7 2E-17 6.8E-22 111.6 5.5 80 80-174 3-82 (88)
174 1fxl_A Paraneoplastic encephal 99.7 2E-16 7E-21 117.1 11.5 82 80-167 86-167 (167)
175 3nmr_A Cugbp ELAV-like family 99.7 1.8E-16 6.3E-21 118.4 11.0 88 81-171 2-89 (175)
176 2qfj_A FBP-interacting repress 99.7 1.3E-16 4.3E-21 123.4 10.4 83 80-170 26-108 (216)
177 3pgw_A U1-A; protein-RNA compl 99.7 1.6E-15 5.5E-20 122.2 17.1 77 79-168 204-281 (282)
178 2cjk_A Nuclear polyadenylated 99.7 5.4E-17 1.8E-21 120.7 7.1 80 81-169 86-165 (167)
179 3u1l_A PRE-mRNA-splicing facto 99.7 1.2E-16 4.2E-21 127.1 9.5 80 78-171 130-230 (240)
180 2pe8_A Splicing factor 45; RRM 99.7 5.1E-16 1.7E-20 108.7 10.5 83 80-169 6-93 (105)
181 2voo_A Lupus LA protein; RNA-b 99.7 3.6E-16 1.2E-20 120.6 9.7 80 81-170 108-187 (193)
182 2adc_A Polypyrimidine tract-bi 99.6 5E-16 1.7E-20 122.2 9.0 79 79-170 31-110 (229)
183 1fje_B Nucleolin RBD12, protei 99.6 4.4E-16 1.5E-20 116.8 7.9 78 79-169 96-173 (175)
184 2cjk_A Nuclear polyadenylated 99.6 3.7E-16 1.3E-20 116.1 7.3 79 81-169 2-80 (167)
185 3smz_A Protein raver-1, ribonu 99.6 1.4E-15 4.9E-20 122.6 10.4 85 79-172 181-266 (284)
186 3tyt_A Heterogeneous nuclear r 99.6 6.7E-16 2.3E-20 120.1 8.0 82 80-167 121-204 (205)
187 3smz_A Protein raver-1, ribonu 99.6 2E-15 6.9E-20 121.8 11.0 85 80-172 93-177 (284)
188 2adc_A Polypyrimidine tract-bi 99.6 2E-15 6.9E-20 118.7 10.2 78 80-170 149-228 (229)
189 1qm9_A Polypyrimidine tract-bi 99.6 1.3E-15 4.5E-20 116.6 8.5 78 80-170 118-197 (198)
190 1qm9_A Polypyrimidine tract-bi 99.6 1E-15 3.6E-20 117.2 7.2 77 81-170 2-79 (198)
191 2dit_A HIV TAT specific factor 99.6 7.4E-15 2.5E-19 103.5 11.0 79 79-169 12-101 (112)
192 3sde_A Paraspeckle component 1 99.6 3.1E-15 1.1E-19 119.9 8.8 77 79-169 19-95 (261)
193 2ghp_A U4/U6 snRNA-associated 99.6 2.9E-15 9.9E-20 121.3 7.8 83 79-169 207-290 (292)
194 2g4b_A Splicing factor U2AF 65 99.6 3.1E-15 1E-19 111.6 7.1 76 81-171 3-89 (172)
195 1fje_B Nucleolin RBD12, protei 99.6 4.1E-16 1.4E-20 117.0 2.0 83 79-171 10-92 (175)
196 3tht_A Alkylated DNA repair pr 99.6 8.8E-15 3E-19 122.0 9.9 82 78-168 14-97 (345)
197 2yh0_A Splicing factor U2AF 65 99.6 4E-15 1.4E-19 113.4 7.0 75 81-170 3-88 (198)
198 3sde_A Paraspeckle component 1 99.5 2.8E-14 9.6E-19 114.3 10.9 80 81-169 95-178 (261)
199 1jmt_A Splicing factor U2AF 35 99.5 2.1E-15 7E-20 105.4 3.5 72 87-167 20-103 (104)
200 2ghp_A U4/U6 snRNA-associated 99.5 8.9E-15 3E-19 118.4 7.8 82 81-171 116-198 (292)
201 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.2E-13 3.9E-18 95.9 11.6 68 92-174 27-94 (100)
202 3v4m_A Splicing factor U2AF 65 99.5 2.4E-14 8.3E-19 100.1 7.9 82 81-168 4-95 (105)
203 3ue2_A Poly(U)-binding-splicin 99.5 8.5E-14 2.9E-18 99.4 9.8 84 81-169 19-108 (118)
204 3s6e_A RNA-binding protein 39; 99.4 2E-12 6.8E-17 91.7 8.9 77 80-168 5-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 2E-11 6.7E-16 87.2 9.5 76 78-167 14-93 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.2 2.4E-11 8.3E-16 82.1 6.2 73 80-169 5-85 (91)
207 3dxb_A Thioredoxin N-terminall 99.0 9E-10 3.1E-14 85.8 9.2 71 93-168 140-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.0 7.8E-10 2.7E-14 75.1 5.1 73 79-168 12-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.4 7.2E-07 2.4E-11 61.9 7.0 73 79-165 18-95 (117)
210 1uw4_A UPF3X; nonsense mediate 98.0 6.6E-05 2.2E-09 50.6 9.6 86 83-169 2-87 (91)
211 1wey_A Calcipressin 1; structu 97.8 3.2E-05 1.1E-09 53.2 5.4 75 81-169 4-83 (104)
212 1whv_A Poly(A)-specific ribonu 97.7 0.00031 1.1E-08 47.7 8.5 58 79-148 13-70 (100)
213 2l08_A Regulator of nonsense t 97.4 0.00045 1.5E-08 46.9 6.9 87 82-169 9-95 (97)
214 2dhx_A Poly (ADP-ribose) polym 97.3 0.002 6.8E-08 44.1 8.7 69 80-165 6-79 (104)
215 3ctr_A Poly(A)-specific ribonu 97.3 0.00051 1.7E-08 46.7 5.3 55 82-148 6-60 (101)
216 1wwh_A Nucleoporin 35, nucleop 96.6 0.01 3.5E-07 41.6 7.8 65 80-155 22-86 (119)
217 2kn4_A Immunoglobulin G-bindin 96.1 0.0059 2E-07 44.1 4.2 34 111-149 2-35 (158)
218 3pq1_A Poly(A) RNA polymerase; 95.9 0.0029 9.8E-08 54.5 2.3 56 81-145 52-107 (464)
219 2i2y_A Fusion protein consists 95.9 0.0025 8.5E-08 45.9 1.4 40 124-169 10-50 (150)
220 3d45_A Poly(A)-specific ribonu 92.9 0.3 1E-05 42.3 7.6 56 81-148 439-494 (507)
221 3p3d_A Nucleoporin 53; structu 92.1 0.092 3.1E-06 37.4 2.8 79 82-167 7-96 (132)
222 4f25_A Polyadenylate-binding p 69.6 0.95 3.2E-05 30.6 0.0 19 80-98 95-113 (115)
223 2g0c_A ATP-dependent RNA helic 67.9 15 0.00052 22.5 5.6 68 84-168 2-75 (76)
224 4e8u_A Putative uncharacterize 39.0 1.1E+02 0.0038 22.3 6.8 66 83-154 13-90 (172)
225 2lea_A Serine/arginine-rich sp 36.8 5.6 0.00019 27.5 -0.6 27 129-155 6-32 (135)
226 4eyt_A Telomerase associated p 32.0 1.1E+02 0.0037 20.1 7.6 57 80-147 10-66 (129)
227 3ts2_A Protein LIN-28 homolog 31.3 9.7 0.00033 27.2 -0.1 28 97-135 2-29 (148)
228 1ik9_C DNA ligase IV; DNA END 22.7 49 0.0017 17.7 1.8 15 92-106 20-34 (37)
229 3fut_A Dimethyladenosine trans 21.6 63 0.0022 25.1 3.0 32 83-115 111-142 (271)
230 2i9x_A Putative septation prot 20.7 1.7E+02 0.0057 18.8 4.4 26 108-136 5-30 (87)
231 3uzu_A Ribosomal RNA small sub 20.5 41 0.0014 26.3 1.7 33 83-115 115-147 (279)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=7e-23 Score=142.26 Aligned_cols=82 Identities=23% Similarity=0.409 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
..+++|||+|||+++|+++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d---~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~--- 90 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD---KVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT--- 90 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC---SSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeec---CCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE---
Confidence 45689999999999999999999999999999999984 334789999999999999999999999999999997
Q ss_pred CceEEEeecC
Q 030012 160 PTLKIQFAHF 169 (184)
Q Consensus 160 ~~l~V~~a~~ 169 (184)
|+|+||++
T Consensus 91 --l~V~~AkP 98 (99)
T 4fxv_A 91 --IKVSYARP 98 (99)
T ss_dssp --CEEEECCB
T ss_pred --EEEEEeeC
Confidence 99999974
No 2
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.87 E-value=5.7e-21 Score=133.10 Aligned_cols=88 Identities=27% Similarity=0.352 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC---C
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD---K 155 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g---~ 155 (184)
...+++|||+|||.++++++|+++|++||.|.+|+++.+. .++++|||||+|.+.++|++|++.|||..+.+ +
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP----DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS----SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC----CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 4568999999999999999999999999999999998854 27899999999999999999999999999998 7
Q ss_pred CCCCCceEEEeecCCCCCCC
Q 030012 156 KPDSPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 156 ~~~~~~l~V~~a~~~~~~~~ 175 (184)
. |+|+|++....+..
T Consensus 88 ~-----l~V~~a~~~~~~~~ 102 (105)
T 2dnh_A 88 S-----LVVKFADTDKESGP 102 (105)
T ss_dssp C-----CEEEESCSSCCCSC
T ss_pred c-----EEEEECccCcccCC
Confidence 6 99999987665443
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=137.45 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
.+.++|||+|||+++++++|+++|++||.|.+|+|+.+. .+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~---~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~--- 77 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHP---RTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI--- 77 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE---
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECC---CCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE---
Confidence 457899999999999999999999999999999999853 34789999999999999999999999999999998
Q ss_pred CceEEEeecCC
Q 030012 160 PTLKIQFAHFP 170 (184)
Q Consensus 160 ~~l~V~~a~~~ 170 (184)
|+|++++..
T Consensus 78 --i~V~~a~~~ 86 (110)
T 3s8s_A 78 --IHAQLDIKG 86 (110)
T ss_dssp --CEEEECSTT
T ss_pred --EEEEECCCC
Confidence 999999643
No 4
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=5.7e-21 Score=130.71 Aligned_cols=88 Identities=23% Similarity=0.429 Sum_probs=78.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
..+++|||+|||.++++++|+++|++||.|.+|+++.+. .+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--- 76 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDS---DTGRSKGYGFITFSDSECARRALEQLNGFELAGRP--- 76 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCS---SSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC---
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecC---CCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE---
Confidence 467899999999999999999999999999999998743 34788999999999999999999999999999998
Q ss_pred CceEEEeecCCCCCCC
Q 030012 160 PTLKIQFAHFPFHLPS 175 (184)
Q Consensus 160 ~~l~V~~a~~~~~~~~ 175 (184)
|+|+|++......+
T Consensus 77 --l~V~~a~~~~~~~~ 90 (95)
T 2dnz_A 77 --MRVGHVTERLDGGS 90 (95)
T ss_dssp --CEEEESSCCCCCCC
T ss_pred --EEEEEcccccCCCC
Confidence 99999987554443
No 5
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.3e-21 Score=133.40 Aligned_cols=90 Identities=20% Similarity=0.390 Sum_probs=80.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|+++.+ +..++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~- 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKD---KTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI- 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEEC---SSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeec---CCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE-
Confidence 3566789999999999999999999999999999999874 334789999999999999999999999999999997
Q ss_pred CCCceEEEeecCCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~~ 175 (184)
|+|+|++....+..
T Consensus 87 ----l~v~~a~~~~~~~~ 100 (103)
T 2cq0_A 87 ----LNVEWAKPSTNSGP 100 (103)
T ss_dssp ----CEEEESSCCCCSCC
T ss_pred ----EEEEECCCCCCCCC
Confidence 99999987655443
No 6
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.9e-21 Score=133.13 Aligned_cols=90 Identities=20% Similarity=0.278 Sum_probs=80.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~- 84 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPRE---PHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE- 84 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBC---SSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC-
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE-
Confidence 4566799999999999999999999999999999999874 334789999999999999999999999999999998
Q ss_pred CCCceEEEeecCCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~~ 175 (184)
|+|+|++.......
T Consensus 85 ----l~V~~a~~~~~~~~ 98 (103)
T 2dnm_A 85 ----LRVQVARYGRRDLS 98 (103)
T ss_dssp ----CEEEECSSCCSCCC
T ss_pred ----EEEEECCcCCCCCC
Confidence 99999987654443
No 7
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.1e-20 Score=130.36 Aligned_cols=89 Identities=25% Similarity=0.394 Sum_probs=78.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||.++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++ ||+..+.|+.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~- 80 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD---AEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKK- 80 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCC---TTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCB-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeC---CCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeE-
Confidence 3466789999999999999999999999999999999874 3337889999999999999999998 9999999997
Q ss_pred CCCceEEEeecCCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~~ 175 (184)
|+|+|++....+.+
T Consensus 81 ----l~V~~a~~~~~~~~ 94 (99)
T 2dgs_A 81 ----VEVKRAEPRDSKSS 94 (99)
T ss_dssp ----CEEEECCCCCCCCC
T ss_pred ----EEEEECCCCcccCC
Confidence 99999987655443
No 8
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=1.2e-20 Score=133.65 Aligned_cols=90 Identities=19% Similarity=0.304 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|+++.+. ..++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 86 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDM---ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ- 86 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE-
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC---CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE-
Confidence 35667899999999999999999999999999999998853 23789999999999999999999999999999997
Q ss_pred CCCceEEEeecCCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~~ 175 (184)
|+|.|++.......
T Consensus 87 ----l~V~~a~~~~~~~~ 100 (115)
T 2dgo_A 87 ----IRTNWATRKPPAPK 100 (115)
T ss_dssp ----CEEEESSCCCCCSC
T ss_pred ----EEEEEccCCCCCCc
Confidence 99999986554443
No 9
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.5e-21 Score=132.23 Aligned_cols=89 Identities=16% Similarity=0.139 Sum_probs=79.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|+++.+. .+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 86 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR---VTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP- 86 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCS---SSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB-
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE-
Confidence 45667899999999999999999999999999999998743 34789999999999999999999999999999997
Q ss_pred CCCceEEEeecCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++......
T Consensus 87 ----l~v~~a~~~~~~~ 99 (105)
T 1x5u_A 87 ----IRVNKASAHNKNL 99 (105)
T ss_dssp ----CEEEETTTTSCCC
T ss_pred ----EEEEECCCCCcCC
Confidence 9999998765443
No 10
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=130.28 Aligned_cols=85 Identities=20% Similarity=0.443 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||.++++++|+++|++||.|.+|+++.+. .++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 87 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR----AGKPKGLAYVEYENESQASQAVMKMDGMTIKENI-- 87 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT----TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC----CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE--
Confidence 4567899999999999999999999999999999998854 3789999999999999999999999999999997
Q ss_pred CCceEEEeecCCCC
Q 030012 159 SPTLKIQFAHFPFH 172 (184)
Q Consensus 159 ~~~l~V~~a~~~~~ 172 (184)
|+|+|++....
T Consensus 88 ---l~v~~a~~~~~ 98 (100)
T 2do4_A 88 ---IKVAISNSGPS 98 (100)
T ss_dssp ---EEEEECCCCSC
T ss_pred ---EEEEECCCCCC
Confidence 99999986554
No 11
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=7.4e-21 Score=134.81 Aligned_cols=89 Identities=22% Similarity=0.433 Sum_probs=79.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|+++.+. .+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 96 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK---QTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR- 96 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECS---SSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE-
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE-
Confidence 34567899999999999999999999999999999998853 33789999999999999999999999999999997
Q ss_pred CCCceEEEeecCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++....+.
T Consensus 97 ----l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 97 ----LKVQLKRSKNDSK 109 (115)
T ss_dssp ----CEEECCCCSCCCC
T ss_pred ----EEEEEcCCCCcCC
Confidence 9999998655433
No 12
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=130.62 Aligned_cols=83 Identities=28% Similarity=0.472 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEE--------EEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--------IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG 149 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--------v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g 149 (184)
+....++|||+|||+++++++|+++|++||.|.+ ++++.+ +.+++++|||||+|.+.++|++|++.|||
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~---~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD---RETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEEC---TTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEec---CCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 4567899999999999999999999999999999 999874 33478999999999999999999999999
Q ss_pred CeeCCCCCCCCceEEEeec
Q 030012 150 YKFDDKKPDSPTLKIQFAH 168 (184)
Q Consensus 150 ~~~~g~~~~~~~l~V~~a~ 168 (184)
..+.|+. |+|+||+
T Consensus 86 ~~~~g~~-----l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNP-----IKVSFAT 99 (99)
T ss_dssp CBSSSSB-----CEEEECC
T ss_pred CEeCCcE-----EEEEecC
Confidence 9999997 9999985
No 13
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=6.8e-21 Score=135.72 Aligned_cols=86 Identities=20% Similarity=0.387 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
.+..++|||+|||.++++++|+++|++||.|.+|+++.+. +++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~-- 77 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR----TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA-- 77 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST----TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC----CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE--
Confidence 4567899999999999999999999999999999998754 3788999999999999999999999999999997
Q ss_pred CCceEEEeecCCCCC
Q 030012 159 SPTLKIQFAHFPFHL 173 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~ 173 (184)
|+|+|++.+...
T Consensus 78 ---l~V~~a~~~~~~ 89 (116)
T 2fy1_A 78 ---IKVEQAKKPSFQ 89 (116)
T ss_dssp ---CEEEECCCSSCS
T ss_pred ---EEEEECCCCCCC
Confidence 999999865433
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=3.6e-22 Score=136.49 Aligned_cols=85 Identities=20% Similarity=0.351 Sum_probs=74.5
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCC-CEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHh-cCCeeCCCCCCC
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFV-GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL-HGYKFDDKKPDS 159 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l-~g~~~~g~~~~~ 159 (184)
+++|||+|||+++||++|+++|++|| .|.+|+++++ +.+++++|||||+|.+.++|++|++.+ ++..+.|+.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d---~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~--- 74 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRN---KSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK--- 74 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSC---SSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE---
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEec---CCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE---
Confidence 57999999999999999999999999 8999999874 344789999999999999999999987 457899997
Q ss_pred CceEEEeecCCCCCC
Q 030012 160 PTLKIQFAHFPFHLP 174 (184)
Q Consensus 160 ~~l~V~~a~~~~~~~ 174 (184)
|+|+|+++.....
T Consensus 75 --i~V~~a~~~~~~~ 87 (91)
T 2lxi_A 75 --VSMHYSDPKPKIN 87 (91)
T ss_dssp --EEEECCCSCCCCS
T ss_pred --EEEEEcCCCCCCC
Confidence 9999997654443
No 15
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-20 Score=132.04 Aligned_cols=87 Identities=24% Similarity=0.482 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|++..+ ++++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~- 90 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR------RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR- 90 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS------SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE-
Confidence 3456789999999999999999999999999999998542 457899999999999999999999999999997
Q ss_pred CCCceEEEeecCCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~~ 175 (184)
|+|+|++......+
T Consensus 91 ----l~V~~a~~~~~~~~ 104 (109)
T 1x4a_A 91 ----LRVEFPRSGRGTGS 104 (109)
T ss_dssp ----CEEECCCCCCCCCC
T ss_pred ----EEEEEcccCCCCCC
Confidence 99999987665444
No 16
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=5.2e-21 Score=136.00 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
...+|||+|||+++++++|+++|++||.|.+|+|+.+. +.++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-----~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~---- 74 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK---- 74 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEE----
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-----CCCCceEEEEECCHHHHHHHHHHcCCCEECCEE----
Confidence 35689999999999999999999999999999998853 357999999999999999999999999999997
Q ss_pred ceEEEeecCCC
Q 030012 161 TLKIQFAHFPF 171 (184)
Q Consensus 161 ~l~V~~a~~~~ 171 (184)
|+|.|++...
T Consensus 75 -i~V~~a~~~~ 84 (115)
T 4f25_A 75 -VFVGRFKSRK 84 (115)
T ss_dssp -CEEEESSCCC
T ss_pred -EEEEECCCcc
Confidence 9999997644
No 17
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.9e-20 Score=129.14 Aligned_cols=87 Identities=22% Similarity=0.310 Sum_probs=78.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|+++.+ .++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~- 84 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-----GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP- 84 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-----SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE-
Confidence 3457889999999999999999999999999999999874 2789999999999999999999999999999997
Q ss_pred CCCceEEEeecCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~ 174 (184)
|+|.|++....+.
T Consensus 85 ----l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 85 ----LYVALAQRKEERQ 97 (103)
T ss_dssp ----CEEEECSSCCCCC
T ss_pred ----EEEEEecccccCC
Confidence 9999998755443
No 18
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.4e-21 Score=131.36 Aligned_cols=89 Identities=24% Similarity=0.384 Sum_probs=79.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
..+.++|||+|||+++++++|+++|++||.|.+|+++.+. .+++++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 83 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR---ETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ-- 83 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCS---SSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE--
Confidence 4567899999999999999999999999999999998743 34788999999999999999999999999999998
Q ss_pred CCceEEEeecCCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~~ 175 (184)
|+|+|++.....++
T Consensus 84 ---l~v~~a~~~~~~~~ 97 (102)
T 1x5s_A 84 ---IRVDQAGKSSDNRS 97 (102)
T ss_dssp ---CEEEEEECCCCCCC
T ss_pred ---EEEEECCCCCCCCC
Confidence 99999987655443
No 19
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.85 E-value=1.3e-20 Score=128.22 Aligned_cols=87 Identities=17% Similarity=0.256 Sum_probs=78.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
...+++|||+|||+++++++|+++|++||.|.++++..+ .++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-----~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~-- 77 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-----NGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE-- 77 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-----SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC--
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-----CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE--
Confidence 466789999999999999999999999999999999862 2688999999999999999999999999999998
Q ss_pred CCceEEEeecCCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~~ 175 (184)
|+|+|++.....++
T Consensus 78 ---l~v~~a~~~~~~~~ 91 (92)
T 2dgv_A 78 ---IDVRIDRNASGPSS 91 (92)
T ss_dssp ---CCCEECSCCSSCCC
T ss_pred ---EEEEEcCCCCCCCC
Confidence 99999988665543
No 20
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=135.14 Aligned_cols=82 Identities=16% Similarity=0.338 Sum_probs=73.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCC--EEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCC----eeC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVG--YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY----KFD 153 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~--i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~----~~~ 153 (184)
..=++|||+|||+++|+++|+++|++||. +.+|+++++ +.++++||||||+|.+.++|++|++.|||. .++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d---~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKD---KQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCC---SSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEec---CCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 34579999999999999999999999995 678988874 344789999999999999999999999997 589
Q ss_pred CCCCCCCceEEEeecC
Q 030012 154 DKKPDSPTLKIQFAHF 169 (184)
Q Consensus 154 g~~~~~~~l~V~~a~~ 169 (184)
|+. |+|+||++
T Consensus 84 Gr~-----i~V~~Aks 94 (95)
T 2lkz_A 84 GKT-----IGVDFAKS 94 (95)
T ss_dssp TEE-----EEEEECCC
T ss_pred CEE-----EEEEEccC
Confidence 997 99999985
No 21
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=8.3e-21 Score=127.76 Aligned_cols=82 Identities=21% Similarity=0.340 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
.+.++|||+|||.++++++|+++|++||.|.+++++.+ +.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--- 77 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKD---MATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ--- 77 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC---TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE---
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec---CCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE---
Confidence 45789999999999999999999999999999999884 234789999999999999999999999999999997
Q ss_pred CceEEEeecC
Q 030012 160 PTLKIQFAHF 169 (184)
Q Consensus 160 ~~l~V~~a~~ 169 (184)
|+|+|++.
T Consensus 78 --l~v~~a~~ 85 (87)
T 3bs9_A 78 --IRTNWATR 85 (87)
T ss_dssp --CEEEEEC-
T ss_pred --EEEEecCC
Confidence 99999975
No 22
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=129.90 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=78.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
..++++|||+|||+++++++|+++|++||.|.+|+++.+. ..++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 79 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS---LTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM-- 79 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCT---TTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC---CCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE--
Confidence 4567899999999999999999999999999999998743 33788999999999999999999999999999997
Q ss_pred CCceEEEeecCCCCC
Q 030012 159 SPTLKIQFAHFPFHL 173 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~ 173 (184)
|+|+|++.....
T Consensus 80 ---l~V~~a~~~~~~ 91 (99)
T 1whw_A 80 ---LHVLPSTIKKEA 91 (99)
T ss_dssp ---EEEEECCCCSTT
T ss_pred ---EEEEEcCCCccc
Confidence 999999876544
No 23
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.3e-20 Score=130.31 Aligned_cols=90 Identities=23% Similarity=0.396 Sum_probs=79.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHh-cCCeeCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL-HGYKFDDKK 156 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l-~g~~~~g~~ 156 (184)
.....++|||+|||+++++++|+++|++||.|.+|+++.+. +..++++|||||+|.+.++|++|++.| |+..+.|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKM--TGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCC--SSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCC--CCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 35667899999999999999999999999999999998641 224788999999999999999999999 999999997
Q ss_pred CCCCceEEEeecCCCCCC
Q 030012 157 PDSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 157 ~~~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++......
T Consensus 89 -----l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 -----LVLEWADSEVTVQ 101 (107)
T ss_dssp -----CEEEECCCCCCCC
T ss_pred -----EEEEeCCCCCCCC
Confidence 9999998754433
No 24
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.8e-21 Score=131.31 Aligned_cols=88 Identities=14% Similarity=0.254 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEE-EEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREI-RVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v-~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
.++++|||+|||+++++++|+++|++||.|.++ +++.+ +..++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~---~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 77 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD---PDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP-- 77 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCC---TTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEc---CCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE--
Confidence 457899999999999999999999999999999 88874 234788999999999999999999999999999997
Q ss_pred CCceEEEeecCCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~~ 175 (184)
|+|+|++....+..
T Consensus 78 ---l~v~~a~~~~~~~~ 91 (96)
T 1x5t_A 78 ---ITVSYAFKKDSKGS 91 (96)
T ss_dssp ---CEEEESCCCCCCCC
T ss_pred ---EEEEEecccCCCCC
Confidence 99999987665544
No 25
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=136.31 Aligned_cols=90 Identities=20% Similarity=0.371 Sum_probs=80.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|+.||.|.+|+++.+. .+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 113 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR---ETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR- 113 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEET---TTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC---CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE-
Confidence 45667899999999999999999999999999999998853 23789999999999999999999999999999997
Q ss_pred CCCceEEEeecCCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~~ 175 (184)
|+|.|++....+.+
T Consensus 114 ----l~v~~a~~~~~~~~ 127 (139)
T 1u6f_A 114 ----LKVALAASGHQRPG 127 (139)
T ss_dssp ----EEEEESSCCCCCCC
T ss_pred ----EEEEECCCCCCCCC
Confidence 99999987554443
No 26
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=2e-20 Score=133.01 Aligned_cols=83 Identities=28% Similarity=0.513 Sum_probs=75.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~---~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~- 111 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFID---KQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR- 111 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCC---SSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE-
Confidence 3556789999999999999999999999999999999874 234788999999999999999999999999999997
Q ss_pred CCCceEEEeec
Q 030012 158 DSPTLKIQFAH 168 (184)
Q Consensus 158 ~~~~l~V~~a~ 168 (184)
|+|+|++
T Consensus 112 ----l~V~~ak 118 (118)
T 2khc_A 112 ----LKVQLKK 118 (118)
T ss_dssp ----CCEEEC-
T ss_pred ----EEEEecC
Confidence 9999985
No 27
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=7.2e-21 Score=127.51 Aligned_cols=82 Identities=20% Similarity=0.385 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
..+.++|||+|||+++++++|+++|++||.|.+++++.+. .+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 78 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY---ETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT-- 78 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEET---TTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECC---CCCccccEEEEEECCHHHHHHHHHHhCCCEECCcE--
Confidence 4567899999999999999999999999999999998752 23788999999999999999999999999999997
Q ss_pred CCceEEEeec
Q 030012 159 SPTLKIQFAH 168 (184)
Q Consensus 159 ~~~l~V~~a~ 168 (184)
|+|+|++
T Consensus 79 ---l~v~~ak 85 (85)
T 3mdf_A 79 ---IRVNLAK 85 (85)
T ss_dssp ---CEEEECC
T ss_pred ---EEEEEcC
Confidence 9999985
No 28
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=1.4e-20 Score=131.29 Aligned_cols=90 Identities=21% Similarity=0.284 Sum_probs=79.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCee---CC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKF---DD 154 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~---~g 154 (184)
.....++|||+|||.++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++.|||..+ .+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKD---RFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCC---SSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec---CCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 3466789999999999999999999999999999999874 33478899999999999999999999999987 77
Q ss_pred CCCCCCceEEEeecCCCCCCC
Q 030012 155 KKPDSPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 155 ~~~~~~~l~V~~a~~~~~~~~ 175 (184)
+. |+|.|++....+.+
T Consensus 86 ~~-----l~v~~a~~~~~~~~ 101 (106)
T 2dgp_A 86 RP-----IQVKPADSESRGGS 101 (106)
T ss_dssp SC-----CEEEECCCCSCCCC
T ss_pred ce-----EEEEECCcccccCC
Confidence 87 99999987665443
No 29
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.1e-20 Score=130.50 Aligned_cols=89 Identities=19% Similarity=0.341 Sum_probs=79.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhc------CCe
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH------GYK 151 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~------g~~ 151 (184)
...+.++|||+|||+++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++.|| +..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLH---PDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC---SSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEec---CCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 3566789999999999999999999999999999999874 3347889999999999999999999999 999
Q ss_pred eCCCCCCCCceEEEeecCCCCCC
Q 030012 152 FDDKKPDSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 152 ~~g~~~~~~~l~V~~a~~~~~~~ 174 (184)
+.|+. |+|+|++......
T Consensus 88 ~~g~~-----l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 88 LDGRQ-----LKVDLAVTRDEAA 105 (111)
T ss_dssp SSSCE-----EEEECCCCCCCCC
T ss_pred EcCEE-----EEEEECCCCccCC
Confidence 99997 9999998654433
No 30
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=128.29 Aligned_cols=83 Identities=18% Similarity=0.318 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
..++++|||+|||+++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 86 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD---QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR-- 86 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEEC---SSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEc---CCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE--
Confidence 456789999999999999999999999999999999874 333789999999999999999999999999999997
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
|+|+|++.
T Consensus 87 ---l~v~~a~~ 94 (95)
T 2cqc_A 87 ---IRVSGPSS 94 (95)
T ss_dssp ---EEEECCSC
T ss_pred ---EEEEecCC
Confidence 99999975
No 31
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=129.35 Aligned_cols=90 Identities=21% Similarity=0.310 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
.++++|||+|||+++++++|+++|++||.|.+|+++.+.....+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--- 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK--- 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE---
Confidence 45789999999999999999999999999999999875432212488999999999999999999999999999997
Q ss_pred CceEEEeecCCCCCC
Q 030012 160 PTLKIQFAHFPFHLP 174 (184)
Q Consensus 160 ~~l~V~~a~~~~~~~ 174 (184)
|+|+|++......
T Consensus 80 --l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 80 --LEVRISERATKPA 92 (98)
T ss_dssp --CEEECSSCSSCCC
T ss_pred --EEEEEccCCCCCC
Confidence 9999998655433
No 32
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=129.50 Aligned_cols=91 Identities=19% Similarity=0.333 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEE-EEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYR-EIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
...+++|||+|||+++++++|+++|++||.|. +|+++.+. ..++++|||||+|.+.++|++|++.|||..+.|+..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 82 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNR---LTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP 82 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECS---SSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecC---CCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Confidence 45679999999999999999999999999999 99998853 347899999999999999999999999999999730
Q ss_pred CCCceEEEeecCCCCC
Q 030012 158 DSPTLKIQFAHFPFHL 173 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~ 173 (184)
...|+|+|++..+..
T Consensus 83 -~~~l~v~~a~~~~~~ 97 (99)
T 2div_A 83 -AKRFKLNYATYSGPS 97 (99)
T ss_dssp -CEECCEEETTCCSSS
T ss_pred -ceeEEEeecCCCCCC
Confidence 112899999876544
No 33
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=131.14 Aligned_cols=89 Identities=19% Similarity=0.313 Sum_probs=79.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
..+.++|||+|||+++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 83 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD---YETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT-- 83 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCC---SSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEec---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE--
Confidence 356789999999999999999999999999999999874 233788999999999999999999999999999997
Q ss_pred CCceEEEeecCCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~~ 175 (184)
|+|+|++....+.+
T Consensus 84 ---l~V~~a~~~~~~~~ 97 (102)
T 2cqb_A 84 ---IRVNLAKPMRIKES 97 (102)
T ss_dssp ---EEEEECCCCCCCCC
T ss_pred ---EEEEeCCCCCCCCC
Confidence 99999987665544
No 34
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=127.84 Aligned_cols=82 Identities=15% Similarity=0.297 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||.++++++|+++|++||.|.+|+++.+. .+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 87 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDK---DTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV-- 87 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCS---SSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE--
Confidence 4567899999999999999999999999999999998743 33688999999999999999999999999999997
Q ss_pred CCceEEEeec
Q 030012 159 SPTLKIQFAH 168 (184)
Q Consensus 159 ~~~l~V~~a~ 168 (184)
|+|+||+
T Consensus 88 ---l~v~~ak 94 (94)
T 2e5h_A 88 ---IKASIAI 94 (94)
T ss_dssp ---EEEEECC
T ss_pred ---EEEEecC
Confidence 9999985
No 35
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=2.5e-20 Score=124.34 Aligned_cols=80 Identities=24% Similarity=0.366 Sum_probs=73.8
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCce
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 162 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l 162 (184)
.+|||+|||.++++++|+++|++||.|.+++++.+ +..++++|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~-----l 73 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD---MQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP-----L 73 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEEC---TTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE-----C
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEc---CCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE-----E
Confidence 58999999999999999999999999999999874 234789999999999999999999999999999997 9
Q ss_pred EEEeecCC
Q 030012 163 KIQFAHFP 170 (184)
Q Consensus 163 ~V~~a~~~ 170 (184)
+|+|++..
T Consensus 74 ~v~~a~~~ 81 (83)
T 3md1_A 74 RINWAAKL 81 (83)
T ss_dssp EEEECCCC
T ss_pred EEEecCcC
Confidence 99999753
No 36
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=1.3e-20 Score=129.42 Aligned_cols=83 Identities=19% Similarity=0.367 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
++++|||+|||.++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~---- 73 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFD---PQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRF---- 73 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC---TTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEE----
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeE----
Confidence 3689999999999999999999999999999999874 334788999999999999999999999999999997
Q ss_pred ceEEEeecCCC
Q 030012 161 TLKIQFAHFPF 171 (184)
Q Consensus 161 ~l~V~~a~~~~ 171 (184)
|+|+|++...
T Consensus 74 -l~V~~a~~~~ 83 (96)
T 2x1f_A 74 -LKCGYSSNSD 83 (96)
T ss_dssp -CEEEECSCSS
T ss_pred -EEEEEcCCCC
Confidence 9999998754
No 37
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.4e-20 Score=128.79 Aligned_cols=88 Identities=27% Similarity=0.433 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|+++.+. ..++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 84 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH-----TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE- 84 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC-----CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEE-
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC-----CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe-
Confidence 35667999999999999999999999999999999998752 236899999999999999999999999999997
Q ss_pred CCCceEEEeecCCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~~ 175 (184)
|+|+|++.+..+..
T Consensus 85 ----l~V~~a~~~~~~~~ 98 (103)
T 2cqi_A 85 ----VKVNWATTPSSQKS 98 (103)
T ss_dssp ----EEEEECCCTTCCCC
T ss_pred ----EEEEECCCCccccc
Confidence 99999987665443
No 38
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=7.1e-20 Score=129.34 Aligned_cols=84 Identities=12% Similarity=0.179 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
...+++|||+|||+++++++|+++|++||.|.+|+++.+.+ ++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 85 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD----GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP-- 85 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE--
Confidence 45678999999999999999999999999999999988532 789999999999999999999999999999997
Q ss_pred CCceEEEeecCCC
Q 030012 159 SPTLKIQFAHFPF 171 (184)
Q Consensus 159 ~~~l~V~~a~~~~ 171 (184)
|+|+|++...
T Consensus 86 ---l~v~~a~~~~ 95 (114)
T 2do0_A 86 ---MHVKMDERAL 95 (114)
T ss_dssp ---CEEEECSCCC
T ss_pred ---EEEEEcccCC
Confidence 9999997543
No 39
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=4.5e-20 Score=128.29 Aligned_cols=87 Identities=20% Similarity=0.431 Sum_probs=77.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
+....++|||+|||+++++++|+++|++|| |.+|+++.+. .+++++|||||+|.+.++|++|+ .|||..+.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~- 84 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDK---DTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRS- 84 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECS---SSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEE-
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecC---CCCccceEEEEEECCHHHHHHHH-hhCCCeECCeE-
Confidence 456678999999999999999999999996 9999998853 34789999999999999999999 89999999997
Q ss_pred CCCceEEEeecCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++......
T Consensus 85 ----l~V~~a~~~~~~~ 97 (103)
T 2dng_A 85 ----LRVDIAEGRKQDK 97 (103)
T ss_dssp ----CEEEECCCCCCCC
T ss_pred ----EEEEEecCCCCCC
Confidence 9999998755443
No 40
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=3.3e-21 Score=131.09 Aligned_cols=83 Identities=13% Similarity=0.164 Sum_probs=70.0
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCC--CEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFV--GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G--~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
.+|||+|||+++++++|+++|++|| .|.+++++.+ +.+|+++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~---~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~---- 74 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN---RANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN---- 74 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEEC---TTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC----
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEec---CCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE----
Confidence 4799999999999999999999999 9999999884 334799999999999999999999999999999998
Q ss_pred ceEEEeecCCCCC
Q 030012 161 TLKIQFAHFPFHL 173 (184)
Q Consensus 161 ~l~V~~a~~~~~~ 173 (184)
|+|.++..+...
T Consensus 75 -i~V~~~~~~~~~ 86 (90)
T 3p5t_L 75 -PVVTPSNKLEHH 86 (90)
T ss_dssp -CEECCC------
T ss_pred -EEEEECCCCccc
Confidence 999999875543
No 41
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-20 Score=130.36 Aligned_cols=84 Identities=20% Similarity=0.352 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
...+++|||+|||.++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 94 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD---RRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP-- 94 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC---TTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEec---CCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE--
Confidence 456789999999999999999999999999999999874 334789999999999999999999999999999997
Q ss_pred CCceEEEeecCC
Q 030012 159 SPTLKIQFAHFP 170 (184)
Q Consensus 159 ~~~l~V~~a~~~ 170 (184)
|+|+|++..
T Consensus 95 ---l~V~~a~~~ 103 (106)
T 1p27_B 95 ---ISVDWCFVR 103 (106)
T ss_dssp ---CEEEESEES
T ss_pred ---EEEEeecCC
Confidence 999999754
No 42
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=129.00 Aligned_cols=83 Identities=14% Similarity=0.262 Sum_probs=76.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|++..+.. ++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 86 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE----GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP- 86 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE-
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCCceEEEEEECCHHHHHHHHHHhCCCEECCCE-
Confidence 345678999999999999999999999999999999988532 689999999999999999999999999999997
Q ss_pred CCCceEEEeecC
Q 030012 158 DSPTLKIQFAHF 169 (184)
Q Consensus 158 ~~~~l~V~~a~~ 169 (184)
|+|+|+++
T Consensus 87 ----l~V~~a~~ 94 (95)
T 2ywk_A 87 ----INVSGPSS 94 (95)
T ss_dssp ----CEEECCCC
T ss_pred ----EEEEEcCC
Confidence 99999975
No 43
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.7e-20 Score=128.96 Aligned_cols=88 Identities=19% Similarity=0.353 Sum_probs=77.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
+..+.++|||+|||+++++++|+++|++|| |.+|+++.+.. +.++++|||||+|.+.++|++|+ .||+..+.|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~--~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~- 85 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS--NPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR- 85 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSS--CTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE-
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCC--CCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE-
Confidence 345678999999999999999999999999 99999987532 12688999999999999999999 99999999997
Q ss_pred CCCceEEEeecCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++....+.
T Consensus 86 ----l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 86 ----IRVDVADQAQDKD 98 (104)
T ss_dssp ----CEEEECCCCCCCC
T ss_pred ----EEEEEccCCCCCC
Confidence 9999998755443
No 44
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=4.3e-20 Score=129.95 Aligned_cols=85 Identities=21% Similarity=0.437 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
....+++|||+|||..+++++|+++|++||.|.+|+++.+. .+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~- 97 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP- 97 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEET---TTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC---CCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE-
Confidence 45667899999999999999999999999999999998753 33789999999999999999999999999999998
Q ss_pred CCCceEEEeecCC
Q 030012 158 DSPTLKIQFAHFP 170 (184)
Q Consensus 158 ~~~~l~V~~a~~~ 170 (184)
|+|+|++..
T Consensus 98 ----l~V~~a~~k 106 (108)
T 2jrs_A 98 ----MKVGHVTER 106 (108)
T ss_dssp ----CEEECSCSS
T ss_pred ----EEEEEcccC
Confidence 999999753
No 45
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=1.7e-20 Score=134.88 Aligned_cols=85 Identities=19% Similarity=0.341 Sum_probs=76.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
....+++|||+|||+++++++|+++|++||.|.+|+|+.+. .+++++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 93 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR---RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP- 93 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT---TTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE-
Confidence 34567899999999999999999999999999999998743 34788999999999999999999999999999997
Q ss_pred CCCceEEEeecCC
Q 030012 158 DSPTLKIQFAHFP 170 (184)
Q Consensus 158 ~~~~l~V~~a~~~ 170 (184)
|+|+|++..
T Consensus 94 ----l~v~~a~~~ 102 (126)
T 3ex7_B 94 ----ISVDWCFVR 102 (126)
T ss_dssp ----CEEEESEES
T ss_pred ----EEEEEecCC
Confidence 999999753
No 46
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.8e-20 Score=126.48 Aligned_cols=87 Identities=21% Similarity=0.342 Sum_probs=77.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|+++.+. ..++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 84 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-----RGSKGFGFVTFENSADADRAREKLHGTVVEGRK- 84 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT-----TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-----CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE-
Confidence 35667999999999999999999999999999999998753 237899999999999999999999999999997
Q ss_pred CCCceEEEeecCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++......
T Consensus 85 ----l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 85 ----IEVNNATARVMTN 97 (103)
T ss_dssp ----CEEEECCSSCCCC
T ss_pred ----EEEEEcccCCCCC
Confidence 9999998755444
No 47
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.5e-20 Score=130.85 Aligned_cols=89 Identities=19% Similarity=0.361 Sum_probs=78.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEE--------EEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYR--------EIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG 149 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--------~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g 149 (184)
.....++|||+|||+++++++|+++|++||.|. .|+++.+ +.+++++|||||+|.+.++|++|++.|||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~---~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD---KETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBC---TTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEe---CCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 346678999999999999999999999999998 5888774 33478999999999999999999999999
Q ss_pred CeeCCCCCCCCceEEEeecCCCCCC
Q 030012 150 YKFDDKKPDSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 150 ~~~~g~~~~~~~l~V~~a~~~~~~~ 174 (184)
..+.|+. |+|+|++......
T Consensus 88 ~~~~g~~-----l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 88 KDFQGSK-----LKVSLARKKPPMN 107 (113)
T ss_dssp CEETTEE-----CEEECSSCCCCST
T ss_pred CccCCCE-----EEEEECCCCCCCC
Confidence 9999997 9999998755443
No 48
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=126.45 Aligned_cols=85 Identities=15% Similarity=0.313 Sum_probs=75.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
.+++|||+|||.++++++|+++|++||.|.+++++.+.. .+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~---- 76 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERM--HPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE---- 76 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT--EEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCC--CCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE----
Confidence 468999999999999999999999999999999987532 12348899999999999999999999999999997
Q ss_pred ceEEEeecCCCC
Q 030012 161 TLKIQFAHFPFH 172 (184)
Q Consensus 161 ~l~V~~a~~~~~ 172 (184)
|+|+|++.+..
T Consensus 77 -l~v~~a~~~~~ 87 (88)
T 4a8x_A 77 -ITATAVLAPWP 87 (88)
T ss_dssp -CEEEEECCCCC
T ss_pred -EEEEECCCCCC
Confidence 99999987653
No 49
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.7e-20 Score=130.40 Aligned_cols=85 Identities=25% Similarity=0.316 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|+|+.+ +.+++++|||||+|.+.++|++|++.|++ .+.|+.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~- 87 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD---RQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK- 87 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCC---SSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEc---CCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE-
Confidence 3456789999999999999999999999999999999874 33478999999999999999999999998 899997
Q ss_pred CCCceEEEeecCCC
Q 030012 158 DSPTLKIQFAHFPF 171 (184)
Q Consensus 158 ~~~~l~V~~a~~~~ 171 (184)
|+|+|++...
T Consensus 88 ----l~V~~a~~~~ 97 (116)
T 2cqd_A 88 ----ANVNLAYLGA 97 (116)
T ss_dssp ----CEEEESTTTC
T ss_pred ----EEEEEcccCC
Confidence 9999997543
No 50
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.2e-20 Score=128.47 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=78.2
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcC-CCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCe-eCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRP-FVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYK-FDDK 155 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~-~~g~ 155 (184)
...++++|||+|||+++++++|+++|++ ||.|.+|+++.+. .++++|||||+|.+.++|++|++.|||.. +.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ----TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT----TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC----CCCccceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 3466789999999999999999999999 9999999999853 37899999999999999999999999999 9999
Q ss_pred CCCCCceEEEeecCCCCC
Q 030012 156 KPDSPTLKIQFAHFPFHL 173 (184)
Q Consensus 156 ~~~~~~l~V~~a~~~~~~ 173 (184)
. |+|+|++....+
T Consensus 81 ~-----l~v~~a~~~~~~ 93 (104)
T 2dhg_A 81 P-----VRLSVAIPKASR 93 (104)
T ss_dssp C-----CCCCBCCCCCSC
T ss_pred e-----EEEEEccCCCcC
Confidence 7 999999764433
No 51
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=136.45 Aligned_cols=89 Identities=15% Similarity=0.262 Sum_probs=78.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEE--EEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCC----e
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY----K 151 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~----~ 151 (184)
....+++|||+|||+++|+++|+++|++||.|.. |+|+.+ +.+++++|||||+|.+. +|++|++.|||. .
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d---~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKD---KQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBC---SSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEc---CCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3466789999999999999999999999999977 999885 33478999999999999 999999999999 9
Q ss_pred eCCCCCCCCceEEEeecCCCCCCC
Q 030012 152 FDDKKPDSPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 152 ~~g~~~~~~~l~V~~a~~~~~~~~ 175 (184)
+.|+. |+|+|++.......
T Consensus 95 ~~gr~-----l~V~~a~~~~~~~~ 113 (131)
T 2m2b_A 95 IDGKT-----INVEFAKGSKRDMA 113 (131)
T ss_dssp GGGCC-----CCCEECCCSCCCCC
T ss_pred CCCEE-----EEEEECCCCCCCCC
Confidence 99998 99999987654443
No 52
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=5.5e-20 Score=137.03 Aligned_cols=87 Identities=22% Similarity=0.267 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||.++++++|+++|++||.|.+|+|+.+. .+++++|||||+|.+.++|++|++.||+..|.++.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~- 110 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK---MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRI- 110 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEE-
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE-
Confidence 34567899999999999999999999999999999998843 34789999999999999999999999999999997
Q ss_pred CCCceEEEeecCCCC
Q 030012 158 DSPTLKIQFAHFPFH 172 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~ 172 (184)
|+|+|++....
T Consensus 111 ----l~V~~a~~~~~ 121 (156)
T 1h2v_Z 111 ----IRTDWDAGFKE 121 (156)
T ss_dssp ----CEEEEESCCCT
T ss_pred ----EEEEECCCCCC
Confidence 99999986443
No 53
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=2.2e-20 Score=131.21 Aligned_cols=87 Identities=18% Similarity=0.287 Sum_probs=77.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
....+++|||+|||.++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~- 97 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD---RRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT- 97 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBC---TTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec---CCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE-
Confidence 3456789999999999999999999999999999999874 334789999999999999999999999999999997
Q ss_pred CCCceEEEeecCCCC
Q 030012 158 DSPTLKIQFAHFPFH 172 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~ 172 (184)
|+|.|++....
T Consensus 98 ----l~V~~a~~~~~ 108 (110)
T 1oo0_B 98 ----IQVDWCFVKGP 108 (110)
T ss_dssp ----CEEEESEESSC
T ss_pred ----EEEEEcccCCC
Confidence 99999976443
No 54
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5e-20 Score=130.05 Aligned_cols=88 Identities=18% Similarity=0.258 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH---HhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVS---HLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~---~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
....++|||+|||+++++++|+ ++|++||.|.+|+++.+......++++|||||+|.+.++|++|++.|||..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 9999999999999987543222246779999999999999999999999999999
Q ss_pred CCCCCceEEEeecCCC
Q 030012 156 KPDSPTLKIQFAHFPF 171 (184)
Q Consensus 156 ~~~~~~l~V~~a~~~~ 171 (184)
. |+|+|++...
T Consensus 92 ~-----l~V~~a~~k~ 102 (111)
T 2cpi_A 92 T-----LKASLGTTKY 102 (111)
T ss_dssp E-----EEEESCCCCS
T ss_pred E-----EEEEeccccc
Confidence 7 9999998654
No 55
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=4.1e-20 Score=134.16 Aligned_cols=86 Identities=19% Similarity=0.344 Sum_probs=77.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
...++++|||+|||+++++++|+++|++||.|.+|+++.+. .+++++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~- 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ---QSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR- 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCS---SSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC---CCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE-
Confidence 35667899999999999999999999999999999998743 34788999999999999999999999999999998
Q ss_pred CCCceEEEeecCCC
Q 030012 158 DSPTLKIQFAHFPF 171 (184)
Q Consensus 158 ~~~~l~V~~a~~~~ 171 (184)
|+|+|++..+
T Consensus 118 ----l~V~~a~~~~ 127 (129)
T 2kxn_B 118 ----IRVDFSITKR 127 (129)
T ss_dssp ----CEESCCSSSS
T ss_pred ----EEEEEecCCC
Confidence 9999997644
No 56
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=5.1e-20 Score=128.67 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
....+++|||+|||+++++++|+++|++||.|.+|+++.+. .++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 99 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR----SGRSLGTADVHFERKADALKAMKQYNGVPLDGRP- 99 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT----TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC----CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE-
Confidence 34667899999999999999999999999999999999854 3789999999999999999999999999999997
Q ss_pred CCCceEEEeec
Q 030012 158 DSPTLKIQFAH 168 (184)
Q Consensus 158 ~~~~l~V~~a~ 168 (184)
|+|+|+.
T Consensus 100 ----l~V~~a~ 106 (107)
T 3ulh_A 100 ----MNIQLVT 106 (107)
T ss_dssp ----CEEEEEC
T ss_pred ----EEEEEeC
Confidence 9999986
No 57
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=1.1e-20 Score=131.17 Aligned_cols=82 Identities=18% Similarity=0.294 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCC------CCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC
Q 030012 80 GESNLLFVDGLPT------DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD 153 (184)
Q Consensus 80 ~~~~~lfVgnLp~------~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~ 153 (184)
..+++|||+|||. ++++++|+++|++||.|.+|+|+.+. .+++++|||||+|.+.++|++|++.|||..+.
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~---~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDE---ATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEET---TTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcC---CCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 4468999999999 99999999999999999999998853 34789999999999999999999999999999
Q ss_pred C-CCCCCCceEEEeecC
Q 030012 154 D-KKPDSPTLKIQFAHF 169 (184)
Q Consensus 154 g-~~~~~~~l~V~~a~~ 169 (184)
| +. |+|.|+..
T Consensus 81 g~r~-----l~V~~a~~ 92 (100)
T 3ns6_A 81 LKHR-----LFLYTMKD 92 (100)
T ss_dssp SSCB-----CEEEESHH
T ss_pred CCeE-----EEEEECch
Confidence 9 86 99999864
No 58
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.5e-20 Score=128.29 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++++++|+++|++||.|.+++++.+ +..++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~-- 86 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY---NEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK-- 86 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE---CSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEE---CCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE--
Confidence 355689999999999999999999999999988777764 233789999999999999999999999999999997
Q ss_pred CCceEEEeecCCC
Q 030012 159 SPTLKIQFAHFPF 171 (184)
Q Consensus 159 ~~~l~V~~a~~~~ 171 (184)
|+|+|++.+.
T Consensus 87 ---l~V~~a~~~~ 96 (98)
T 2cqp_A 87 ---VKLVLGSGPS 96 (98)
T ss_dssp ---CEEEESSCSS
T ss_pred ---EEEEEcCCCC
Confidence 9999997654
No 59
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-20 Score=126.62 Aligned_cols=82 Identities=23% Similarity=0.349 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
.++++|||+|||+++++++|+++|++||.|.+++++.+ +.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--- 76 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILD---KTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM--- 76 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECC---SSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES---
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec---CCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE---
Confidence 56789999999999999999999999999999999874 234788999999999999999999999999999997
Q ss_pred CceEEEeecC
Q 030012 160 PTLKIQFAHF 169 (184)
Q Consensus 160 ~~l~V~~a~~ 169 (184)
|+++|++.
T Consensus 77 --~~~~~~~s 84 (85)
T 1x4e_A 77 --AKQSGPSS 84 (85)
T ss_dssp --CCSSCCCC
T ss_pred --EeecCCCC
Confidence 88877653
No 60
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.5e-20 Score=129.93 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhc--CCeeCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH--GYKFDDKK 156 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~--g~~~~g~~ 156 (184)
..+.++|||+|||+++||++|+++|++||.|.+|+++.+ ||||||+|++.++|++|++.|+ +.++.|+.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 456899999999999999999999999999999999752 5799999999999999999886 47899997
Q ss_pred CCCCceEEEeecCCCCCC
Q 030012 157 PDSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 157 ~~~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++......
T Consensus 84 -----l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 84 -----IYIQFSNHKELKT 96 (105)
T ss_dssp -----CCBCCCSSSSCCC
T ss_pred -----EEEEEcCCCCCCc
Confidence 9999998654433
No 61
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.6e-19 Score=124.79 Aligned_cols=89 Identities=12% Similarity=0.282 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC-
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP- 157 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~- 157 (184)
....++|||+|||+++++++|+++|++||.|.+|+++.+. .++++|||||+|.+.++|++|++.|||..+.++..
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~----~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS----SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS----SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC----CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 4567899999999999999999999999999999998853 37899999999999999999999999999954321
Q ss_pred --CCCceEEEeecCCC
Q 030012 158 --DSPTLKIQFAHFPF 171 (184)
Q Consensus 158 --~~~~l~V~~a~~~~ 171 (184)
...+|+|.|++++.
T Consensus 98 ~~~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPSS 113 (114)
T ss_dssp CCCSSCBEEEECCCSC
T ss_pred cCCCCceeEEccCCCC
Confidence 23359999998543
No 62
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7e-20 Score=125.99 Aligned_cols=84 Identities=18% Similarity=0.237 Sum_probs=74.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH----HhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVS----HLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 154 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g 154 (184)
....++|||+|||+++++++|+ ++|++||.|.+|+++.+.. . +|||||+|.+.++|++|++.|||..+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~----~--rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD----Y--QLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS----T--TCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC----C--CeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456899999999999999999 9999999999999987432 1 7899999999999999999999999999
Q ss_pred CCCCCCceEEEeecCCCCC
Q 030012 155 KKPDSPTLKIQFAHFPFHL 173 (184)
Q Consensus 155 ~~~~~~~l~V~~a~~~~~~ 173 (184)
+. |+|+|++....+
T Consensus 80 r~-----l~V~~a~~~~~~ 93 (96)
T 2dgx_A 80 KK-----ILVSLATGASGP 93 (96)
T ss_dssp EE-----EEEEECCCSSCC
T ss_pred eE-----EEEEEcCCCCCC
Confidence 97 999999765543
No 63
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=122.15 Aligned_cols=81 Identities=25% Similarity=0.400 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 71 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN-- 71 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----------TTEEEEEESSHHHHHHHHHHHTTCBCSSCB--
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhcCCccCCcE--
Confidence 4567899999999999999999999999999999986 259999999999999999999999999998
Q ss_pred CCceEEEeecCCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~~ 175 (184)
|+|+|++.......
T Consensus 72 ---l~v~~a~~~~~~~~ 85 (90)
T 2dnq_A 72 ---INVEASKNKSKASS 85 (90)
T ss_dssp ---CEEECSSCCCCCCS
T ss_pred ---EEEEECCCCCCCCC
Confidence 99999987655443
No 64
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-20 Score=129.91 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++++++|+++|++||.|.+++++.+. .+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 79 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR---ETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA-- 79 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEET---TTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC--
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCC---CCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE--
Confidence 3456899999999999999999999999999999998753 23789999999999999999999999999999998
Q ss_pred CCceEEEeecCCC
Q 030012 159 SPTLKIQFAHFPF 171 (184)
Q Consensus 159 ~~~l~V~~a~~~~ 171 (184)
|+|+|++...
T Consensus 80 ---l~v~~a~~~~ 89 (104)
T 1p1t_A 80 ---LRVDNAASEK 89 (104)
T ss_dssp ---BEEEETTCTT
T ss_pred ---EEEEeCCCcc
Confidence 9999998654
No 65
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=127.06 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcC--CeeCCC
Q 030012 79 KGESNLLFVDGLPT-DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG--YKFDDK 155 (184)
Q Consensus 79 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g--~~~~g~ 155 (184)
.+++++|||+|||+ +++++||+++|++||.|.+|+++.+ +|||||+|++.++|++|++.||+ ..+.|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 82 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---------INEAFIEMATTEDAQAAVDYYTTTPALVFGK 82 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---------SSCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---------CCEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence 45689999999999 9999999999999999999999752 46999999999999999999986 459999
Q ss_pred CCCCCceEEEeecCCC
Q 030012 156 KPDSPTLKIQFAHFPF 171 (184)
Q Consensus 156 ~~~~~~l~V~~a~~~~ 171 (184)
. |+|+|++...
T Consensus 83 ~-----l~V~~a~~~~ 93 (102)
T 1x4d_A 83 P-----VRVHLSQKYK 93 (102)
T ss_dssp E-----CEEEEECCCT
T ss_pred E-----EEEEECCCCC
Confidence 7 9999998644
No 66
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5.2e-20 Score=128.32 Aligned_cols=88 Identities=20% Similarity=0.341 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++. ++..+.|+.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~- 86 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKD---KTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN- 86 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEEC---SSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEE-
Confidence 3566789999999999999999999999999999999884 33478999999999999999999998 999999997
Q ss_pred CCCceEEEeecCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++.....+
T Consensus 87 ----l~V~~a~~~~~~~ 99 (105)
T 2dh8_A 87 ----IDPKPCTPRGMQP 99 (105)
T ss_dssp ----EBCCCSCCSSCCT
T ss_pred ----EEEEEccCCCCCC
Confidence 9999998655443
No 67
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6e-20 Score=128.37 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++|+++|+++|++||.|.+|+++.+. . ++++|||||+|.+.++|++|++ +++..+.|+.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~---~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~-- 80 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL---H-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETD-- 80 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCC---T-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTT--
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECC---C-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEE--
Confidence 3456899999999999999999999999999999998753 3 7899999999999999999998 9999999998
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
|.|.|+..
T Consensus 81 ---l~V~~~~~ 88 (103)
T 1s79_A 81 ---LLILFKDD 88 (103)
T ss_dssp ---CEEEEHHH
T ss_pred ---EEEEEchH
Confidence 99999864
No 68
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=8.4e-20 Score=123.27 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=73.7
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCc
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 161 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~ 161 (184)
.++|||+|||+++++++|+++|++||.|.+++++.+. ..++++|||||+|.+.++|++|+ .|||..+.|+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~----- 76 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDK---FSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQ----- 76 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESC---SSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEE-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecC---CCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcE-----
Confidence 5799999999999999999999999999999998743 23788999999999999999999 99999999997
Q ss_pred eEEEeecCC
Q 030012 162 LKIQFAHFP 170 (184)
Q Consensus 162 l~V~~a~~~ 170 (184)
|+|++++..
T Consensus 77 l~V~~a~~~ 85 (89)
T 3ucg_A 77 IKVIPKRTN 85 (89)
T ss_dssp CEEEETTTT
T ss_pred EEEEEccCC
Confidence 999999764
No 69
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=8.4e-20 Score=132.31 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH----HhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVS----HLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 154 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g 154 (184)
..++++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|+.|++.|||..+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~------~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL------SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC------CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc------CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 4567899999999999999876 6999999999988743 26789999999999999999999999999999
Q ss_pred CCCCCCceEEEeecCCC
Q 030012 155 KKPDSPTLKIQFAHFPF 171 (184)
Q Consensus 155 ~~~~~~~l~V~~a~~~~ 171 (184)
+. |+|+|++...
T Consensus 100 r~-----l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NP-----LVITFSETPQ 111 (127)
T ss_dssp SC-----CEEEECCCCC
T ss_pred CE-----EEEEEccCcc
Confidence 97 9999998654
No 70
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=124.30 Aligned_cols=80 Identities=18% Similarity=0.337 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++++++|+++|++||.|. ++++. ++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 85 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-------QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT-- 85 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-------ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC--
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-------CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE--
Confidence 45578999999999999999999999999997 66665 356789999999999999999999999999998
Q ss_pred CCceEEEeecCCC
Q 030012 159 SPTLKIQFAHFPF 171 (184)
Q Consensus 159 ~~~l~V~~a~~~~ 171 (184)
|+|+|++...
T Consensus 86 ---l~V~~a~~~~ 95 (97)
T 2e5j_A 86 ---LRVALARQQR 95 (97)
T ss_dssp ---CEEEECCCCC
T ss_pred ---EEEEEcCCCC
Confidence 9999997654
No 71
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4e-19 Score=123.83 Aligned_cols=82 Identities=21% Similarity=0.256 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhc--CCeeCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH--GYKFDDKK 156 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~--g~~~~g~~ 156 (184)
..++++|||+|||+++++++|+++|++||.|.+|+++.+ ||||||+|++.++|++|++.|+ +..+.|+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 456789999999999999999999999999999988642 5799999999999999999874 68899997
Q ss_pred CCCCceEEEeecCCCCCC
Q 030012 157 PDSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 157 ~~~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++....+.
T Consensus 83 -----l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 83 -----IYIQYSNHKELKT 95 (101)
T ss_dssp -----CEEEECSCSSCCC
T ss_pred -----EEEEEcCcccCcC
Confidence 9999998654443
No 72
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=7.6e-20 Score=136.91 Aligned_cols=82 Identities=12% Similarity=0.184 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCC--CEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFV--GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G--~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
...++|||+|||+++++++|+++|++|| .|.+|+++.+ +.+|+++|||||+|.+.++|++||+.|||..|.|+.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d---~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~- 128 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAEN---RANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK- 128 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEEC---TTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEE-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEec---CCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE-
Confidence 3568999999999999999999999999 9999999885 334899999999999999999999999999999997
Q ss_pred CCCceEEEeecC
Q 030012 158 DSPTLKIQFAHF 169 (184)
Q Consensus 158 ~~~~l~V~~a~~ 169 (184)
|+|+|+..
T Consensus 129 ----l~V~~a~~ 136 (156)
T 3n9u_C 129 ----VDVRPATR 136 (156)
T ss_dssp ----CEEEECCH
T ss_pred ----eEEEEcCC
Confidence 99999963
No 73
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=127.73 Aligned_cols=85 Identities=25% Similarity=0.400 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCE----EEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGY----REIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 154 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i----~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g 154 (184)
..++++|||+|||+++++++|+++|++||.| +.+++.. ++++|||||+|.+.++|++|++.|||..+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-------g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT-------GRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC-------SSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC-------CccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4567899999999999999999999999998 5555542 6788999999999999999999999999999
Q ss_pred CCCCCCceEEEeecCCCCCCC
Q 030012 155 KKPDSPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 155 ~~~~~~~l~V~~a~~~~~~~~ 175 (184)
+. |+|+|++....+..
T Consensus 95 ~~-----l~v~~a~~~~~~~~ 110 (115)
T 2cpx_A 95 KI-----LVIEFGKNKKQRSS 110 (115)
T ss_dssp CB-----CEEEECCCCSCCCC
T ss_pred cE-----EEEEEccCCCCCCC
Confidence 97 99999987654443
No 74
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=124.48 Aligned_cols=84 Identities=15% Similarity=0.261 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++++++|+++|++||.| +++.+. .++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 82 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQ----NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA-- 82 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCS----SSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECC----CCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE--
Confidence 4568999999999999999999999999976 455432 2688999999999999999999999999999997
Q ss_pred CCceEEEeecCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLP 174 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++......
T Consensus 83 ---l~v~~a~~~~~~~ 95 (101)
T 2fc9_A 83 ---IRLELQGPRGSPN 95 (101)
T ss_dssp ---EEEEECSSCCCCC
T ss_pred ---EEEEEcCCCCCCC
Confidence 9999998765444
No 75
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=122.16 Aligned_cols=81 Identities=14% Similarity=0.245 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++++++|+++|+.| .|.+|+++.+. .++++|||||+|.+.++|++|++ |||..+.|+.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~----~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~-- 78 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA----HGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRY-- 78 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT----TSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEE--
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC----CCCCceEEEEEECCHHHHHHHHH-hCCceeCCcE--
Confidence 4567899999999999999999999999 99999998853 27899999999999999999999 9999999997
Q ss_pred CCceEEEeecCC
Q 030012 159 SPTLKIQFAHFP 170 (184)
Q Consensus 159 ~~~l~V~~a~~~ 170 (184)
|+|.+++..
T Consensus 79 ---i~v~~a~~~ 87 (91)
T 2dgw_A 79 ---IEVFREKSG 87 (91)
T ss_dssp ---EEEEEESSC
T ss_pred ---EEEEECCcC
Confidence 999999764
No 76
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=125.83 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++|++||+++|++|| +++|+|+.++ +++++|||||+|.+.++|++|++ +|+..+.++.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~----~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~-- 83 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP----DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRY-- 83 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS----SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC----CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcE--
Confidence 35568999999999999999999999999 5599998864 27999999999999999999995 7999999998
Q ss_pred CCceEEEeecCCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~~ 175 (184)
|+|.++.......+
T Consensus 84 ---i~V~~~~~~~~~~~ 97 (102)
T 1wez_A 84 ---VELFLNSTAGTSGS 97 (102)
T ss_dssp ---CEEEEECCCCCCCC
T ss_pred ---EEEEECCCCCCCCC
Confidence 99999987665444
No 77
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.7e-19 Score=124.63 Aligned_cols=82 Identities=11% Similarity=0.108 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCC--eeCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY--KFDDKK 156 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~--~~~g~~ 156 (184)
..++++|||+|||+++++++|+++|++||.|.+|+++. .||||||+|++.++|++|++.|++. .+.|+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 45678999999999999999999999999999999864 2579999999999999999999764 589987
Q ss_pred CCCCceEEEeecCCCCCC
Q 030012 157 PDSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 157 ~~~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++....+.
T Consensus 83 -----l~V~~a~~~~~~~ 95 (104)
T 1wex_A 83 -----AFFNYSTSKRITR 95 (104)
T ss_dssp -----CEEEECSSSSCCC
T ss_pred -----EEEEEccCccccC
Confidence 9999998654433
No 78
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=1e-19 Score=130.44 Aligned_cols=86 Identities=13% Similarity=0.227 Sum_probs=76.7
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
..++|||+|||.++++++|+++|++||.|.+|+++.+. .+++++|||||+|.+.++|++|+ .|||..+.|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~---- 106 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDK---FSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRT---- 106 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEEC---TTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEE----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeE----
Confidence 46899999999999999999999999999999998853 23789999999999999999999 79999999997
Q ss_pred ceEEEeecCCCCCCC
Q 030012 161 TLKIQFAHFPFHLPS 175 (184)
Q Consensus 161 ~l~V~~a~~~~~~~~ 175 (184)
|+|+|++.......
T Consensus 107 -l~V~~a~~~~~~~~ 120 (124)
T 2jwn_A 107 -IKVLPKRTNMPGIS 120 (124)
T ss_dssp -CEEEESSCCCSSCC
T ss_pred -EEEEECCCCCCCCC
Confidence 99999986554433
No 79
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1.3e-19 Score=136.40 Aligned_cols=88 Identities=18% Similarity=0.275 Sum_probs=77.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
....+++|||+|||+++++++|+++|++||.|.+|+|+.+ +.+++++|||||+|.+.++|++||+.|||..|.|+.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~- 143 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD---RRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT- 143 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC---TTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEec---CCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE-
Confidence 3456789999999999999999999999999999999874 334789999999999999999999999999999997
Q ss_pred CCCceEEEeecCCCCC
Q 030012 158 DSPTLKIQFAHFPFHL 173 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~ 173 (184)
|+|.|++....+
T Consensus 144 ----l~V~~a~~~~~~ 155 (165)
T 1rk8_A 144 ----IQVDWCFVKGPK 155 (165)
T ss_dssp ----CEEEESEECC--
T ss_pred ----EEEEEecCCCCC
Confidence 999999764433
No 80
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=4.7e-20 Score=134.80 Aligned_cols=90 Identities=23% Similarity=0.341 Sum_probs=79.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~- 118 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD---RYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE- 118 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCC---SSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec---CCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE-
Confidence 4556789999999999999999999999999999999874 234789999999999999999999999999999998
Q ss_pred CCCceEEEeecCCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~~ 175 (184)
|+|+|++......+
T Consensus 119 ----l~V~~a~~~~~~~~ 132 (135)
T 2lea_A 119 ----LRVQMARYGRPPDS 132 (135)
T ss_dssp ----CEEEECCCCCCCTT
T ss_pred ----EEEEECCCCCCCcc
Confidence 99999987655443
No 81
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=1.6e-19 Score=121.55 Aligned_cols=81 Identities=17% Similarity=0.342 Sum_probs=72.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++ +++..+.|+.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~- 81 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMD---PNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRV- 81 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEEC---TTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeec---CCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEE-
Confidence 3567789999999999999999999999999999999874 3347899999999999999999996 5888999997
Q ss_pred CCCceEEEee
Q 030012 158 DSPTLKIQFA 167 (184)
Q Consensus 158 ~~~~l~V~~a 167 (184)
|+|++|
T Consensus 82 ----i~v~~A 87 (87)
T 3s7r_A 82 ----IDPKKA 87 (87)
T ss_dssp ----EEEEEC
T ss_pred ----EEEEeC
Confidence 999986
No 82
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=126.09 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=70.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCe--eCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYK--FDDKK 156 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~--~~g~~ 156 (184)
..++++|||+|||+++|+++|+++|++||.|.++++++ +||||||+|++.++|++|++.|++.. +.|+.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 45789999999999999999999999999999999874 35799999999999999999999875 77987
Q ss_pred CCCCceEEEeecCC
Q 030012 157 PDSPTLKIQFAHFP 170 (184)
Q Consensus 157 ~~~~~l~V~~a~~~ 170 (184)
|+|+|++..
T Consensus 89 -----i~V~~S~~k 97 (100)
T 3r27_A 89 -----AFVNYSTSQ 97 (100)
T ss_dssp -----EEEEECSCS
T ss_pred -----EEEEecccc
Confidence 999999753
No 83
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=125.71 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++++++|+++|++||.|.+|+++.+ |||||+|.+.++|++||+.|||.++.|....
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 456789999999999999999999999999999999752 5999999999999999999999999991111
Q ss_pred CCceEEEeecCCC
Q 030012 159 SPTLKIQFAHFPF 171 (184)
Q Consensus 159 ~~~l~V~~a~~~~ 171 (184)
...|+|+|++...
T Consensus 82 ~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 82 TAYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEEESSCCS
T ss_pred ceEEEEEeCCCCC
Confidence 1139999998644
No 84
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.8e-19 Score=122.95 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=75.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++ ++..+.|+.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~- 84 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD---LKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRW- 84 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEEC---SSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEE-
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEec---CCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeE-
Confidence 4566789999999999999999999999999999999884 3347899999999999999999998 578999997
Q ss_pred CCCceEEEeecCCCCC
Q 030012 158 DSPTLKIQFAHFPFHL 173 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~ 173 (184)
|+|+|++.....
T Consensus 85 ----l~v~~a~~~~~~ 96 (103)
T 2cqg_A 85 ----CDCKLPNSKQSQ 96 (103)
T ss_dssp ----EEEECCCTTCCC
T ss_pred ----EEEEecCCCCcC
Confidence 999999865433
No 85
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.1e-20 Score=129.90 Aligned_cols=87 Identities=18% Similarity=0.222 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++. ++..+.|+.
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~-- 97 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD---PASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRV-- 97 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECC---TTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEE--
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC---CCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEE--
Confidence 345689999999999999999999999999999999874 33478899999999999999999987 999999997
Q ss_pred CCceEEEeecCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLP 174 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++......
T Consensus 98 ---l~V~~a~~~~~~~ 110 (116)
T 1x4b_A 98 ---VEPKRAVAREESG 110 (116)
T ss_dssp ---EEEECCSSCCCCC
T ss_pred ---EEEEECCCCccCC
Confidence 9999998655443
No 86
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=4.1e-19 Score=123.00 Aligned_cols=86 Identities=24% Similarity=0.358 Sum_probs=73.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|+.|+ +++++.+ +..++++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~- 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTD---RETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK- 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEEC---SSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE-
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEec---CCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE-
Confidence 346679999999999999999999999874 5666663 233789999999999999999999999999999997
Q ss_pred CCCceEEEeecCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++......
T Consensus 84 ----l~V~~a~~~~~~~ 96 (102)
T 2fc8_A 84 ----VTLDWAKPKGEGG 96 (102)
T ss_dssp ----CEEEECCCCCSSS
T ss_pred ----EEEEEecCCCCCC
Confidence 9999998755443
No 87
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=4.9e-20 Score=127.70 Aligned_cols=83 Identities=19% Similarity=0.391 Sum_probs=71.7
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++|| |.+|+++.+.. ..++++|||||+|.+.++|++|+ .|||..+.|+.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~--~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~- 89 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS--NPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR- 89 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTT--TTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC-
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCC--cCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE-
Confidence 456779999999999999999999999999 99999987531 23789999999999999999999 89999999998
Q ss_pred CCCceEEEeecC
Q 030012 158 DSPTLKIQFAHF 169 (184)
Q Consensus 158 ~~~~l~V~~a~~ 169 (184)
|+|+|++.
T Consensus 90 ----l~V~~a~~ 97 (100)
T 2j76_E 90 ----IRVDVADQ 97 (100)
T ss_dssp ----CCCEECCC
T ss_pred ----EEEEeccC
Confidence 99999975
No 88
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=128.25 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhc--CCeeCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH--GYKFDDKK 156 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~--g~~~~g~~ 156 (184)
..++++|||+|||++++|++|+++|++||.|++|+++.+ ||||||+|++.++|++|++.|+ +..+.|+.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---------CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 456789999999999999999999999999999999752 5799999999999999999997 47899997
Q ss_pred CCCCceEEEeecCCCCCCC
Q 030012 157 PDSPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 157 ~~~~~l~V~~a~~~~~~~~ 175 (184)
|+|+|++....+..
T Consensus 99 -----l~V~~a~~k~~~~~ 112 (119)
T 2ad9_A 99 -----IYIQFSNHKELKTD 112 (119)
T ss_dssp -----CEEEECSSSSCCCC
T ss_pred -----EEEEEccCCCCCcc
Confidence 99999986554443
No 89
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=2e-19 Score=133.92 Aligned_cols=88 Identities=23% Similarity=0.339 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~---~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 141 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD---RYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE-- 141 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCC---SSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec---CCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE--
Confidence 455789999999999999999999999999999999874 234789999999999999999999999999999997
Q ss_pred CCceEEEeecCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLP 174 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++....+.
T Consensus 142 ---l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 142 ---LRVQMARYGRPPD 154 (158)
T ss_dssp ---EEEEEECCSSCCC
T ss_pred ---EEEEECCCCCCCC
Confidence 9999998765443
No 90
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4.5e-19 Score=121.88 Aligned_cols=80 Identities=19% Similarity=0.411 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC--CCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD--DKK 156 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~--g~~ 156 (184)
..++++|||+|||+++++++|+++|++||.|.+|++... +|||||+|.+.++|++|++.|||..+. ++.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 355789999999999999999999999999999988641 579999999999999999999999999 887
Q ss_pred CCCCceEEEeecCCCC
Q 030012 157 PDSPTLKIQFAHFPFH 172 (184)
Q Consensus 157 ~~~~~l~V~~a~~~~~ 172 (184)
|+|+|++....
T Consensus 85 -----l~V~~a~~~~~ 95 (97)
T 1why_A 85 -----LRVDFAKSGPS 95 (97)
T ss_dssp -----CEEEECCCCCC
T ss_pred -----EEEEECCCCCC
Confidence 99999987543
No 91
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=1.2e-18 Score=125.03 Aligned_cols=86 Identities=20% Similarity=0.260 Sum_probs=78.0
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
....+++|||+|||+++++++|+++|++||.|.+|++..+. .++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~----~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~- 105 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR----SGRSLGTADVHFERRADALKAMKQYKGVPLDGRP- 105 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS----SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC----CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE-
Confidence 34667899999999999999999999999999999998753 3788999999999999999999999999999997
Q ss_pred CCCceEEEeecCCCC
Q 030012 158 DSPTLKIQFAHFPFH 172 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~ 172 (184)
|+|+|+.....
T Consensus 106 ----l~V~~a~~~~~ 116 (124)
T 2kt5_A 106 ----MDIQLVASQID 116 (124)
T ss_dssp ----EEEEEECCTTC
T ss_pred ----EEEEEeCCCCC
Confidence 99999986543
No 92
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.8e-20 Score=129.62 Aligned_cols=82 Identities=20% Similarity=0.360 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|+ .|||..|.|+.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~-- 95 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISD---RNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVP-- 95 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCS---CCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEE--
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEec---CCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeE--
Confidence 345689999999999999999999999999999999874 333788999999999999999999 99999999997
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
|+|+|++.
T Consensus 96 ---l~V~~a~~ 103 (114)
T 2cq4_A 96 ---IIVQASQA 103 (114)
T ss_dssp ---EEEEEHHH
T ss_pred ---EEEEecCC
Confidence 99999875
No 93
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.80 E-value=4.3e-20 Score=130.88 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCC-CEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFV-GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....+|||+|||+++++++|+++|++|| .|..+++.. .+++|||||+|.+.++|++|++.|||.++.|+.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-------~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~-- 96 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-------RDFDGTGALEFPSEEILVEALERLNNIEFRGSV-- 96 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-------CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE--
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-------CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE--
Confidence 4568999999999999999999999999 899998853 246789999999999999999999999999998
Q ss_pred CCceEEEeecCCC
Q 030012 159 SPTLKIQFAHFPF 171 (184)
Q Consensus 159 ~~~l~V~~a~~~~ 171 (184)
|+|++++.+.
T Consensus 97 ---i~V~~a~~~p 106 (111)
T 2jvr_A 97 ---ITVERDDNPP 106 (111)
T ss_dssp ---EEEEESCC--
T ss_pred ---EEEEECCCCC
Confidence 9999998654
No 94
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=1.6e-19 Score=127.22 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=72.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++.+ +..+.|+.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~- 95 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD---PLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKT- 95 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCC---TTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEE-
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEEC---CCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEE-
Confidence 4566789999999999999999999999999999999874 334789999999999999999999976 59999997
Q ss_pred CCCceEEEeecCCCC
Q 030012 158 DSPTLKIQFAHFPFH 172 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~ 172 (184)
|+|+|+.....
T Consensus 96 ----l~V~~a~~~~~ 106 (109)
T 2rs2_A 96 ----IDPKVAFPRRA 106 (109)
T ss_dssp ----EEEEECCCCCC
T ss_pred ----EEEEEccCCCC
Confidence 99999976443
No 95
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=5.7e-20 Score=125.69 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
...++|||+|||+++++++|+++|++||.|.+++++.+. ..++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~---~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~--- 86 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN---EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK--- 86 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC---TTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC---CCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE---
Confidence 346899999999999999999999999999888877742 33789999999999999999999999999999997
Q ss_pred CceEEEeecC
Q 030012 160 PTLKIQFAHF 169 (184)
Q Consensus 160 ~~l~V~~a~~ 169 (184)
|+|+++..
T Consensus 87 --l~v~~a~s 94 (95)
T 2ek1_A 87 --VKLSGPSS 94 (95)
T ss_dssp --CEEECCC-
T ss_pred --EEEEeccC
Confidence 99999864
No 96
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=3.3e-19 Score=126.12 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
...+++|||+|||+++++++|+++|++||.|.+|+++.+ +.++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 76 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT------PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY-- 76 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS------TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE--
Confidence 466789999999999999999999999999999999863 455889999999999999999999999999997
Q ss_pred CCceEEEeecCC
Q 030012 159 SPTLKIQFAHFP 170 (184)
Q Consensus 159 ~~~l~V~~a~~~ 170 (184)
|+|+|++..
T Consensus 77 ---l~v~~a~~~ 85 (115)
T 3lqv_A 77 ---LVVLYYNAN 85 (115)
T ss_dssp ---CEEEECCHH
T ss_pred ---EEEEEecCC
Confidence 999999753
No 97
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.5e-19 Score=120.77 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=73.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|++++ +||||+|.+.++|++|++.|||..+.|+.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g~~- 73 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-----------DYAFVHMERAEDAVEAIRGLDNTEFQGKR- 73 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-----------SEEEEEESCHHHHHHHHHHHTTEEETTEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCeeCCcE-
Confidence 345678999999999999999999999999999999863 39999999999999999999999999997
Q ss_pred CCCceEEEeecCCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~~ 175 (184)
|+|+|++.......
T Consensus 74 ----l~V~~a~~~~~~~~ 87 (92)
T 2dgt_A 74 ----MHVQLSTSRLRTAS 87 (92)
T ss_dssp ----EEEEESSCCCSCCC
T ss_pred ----EEEEEccCCCCCCC
Confidence 99999987655443
No 98
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=126.02 Aligned_cols=81 Identities=20% Similarity=0.358 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCC------cHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCee
Q 030012 79 KGESNLLFVDGLPTDC------TRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKF 152 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~------te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~ 152 (184)
...+++|||+|||+.+ ++++|+++|++||.|.+|+++. + .|+++|||||+|.+.++|++|++.|||..+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~-~----~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-E----DGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC-B----TTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC-C----CCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 4557899999999999 8899999999999999999872 2 278999999999999999999999999999
Q ss_pred CCC-CCCCCceEEEeecC
Q 030012 153 DDK-KPDSPTLKIQFAHF 169 (184)
Q Consensus 153 ~g~-~~~~~~l~V~~a~~ 169 (184)
.|+ . |+|+|+..
T Consensus 87 ~g~~~-----l~V~~a~~ 99 (105)
T 2nlw_A 87 DKQHT-----FRVNLFTD 99 (105)
T ss_dssp STTCE-----EEEECSCC
T ss_pred CCCce-----EEEEEcch
Confidence 998 7 99999964
No 99
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=7.7e-20 Score=119.84 Aligned_cols=75 Identities=23% Similarity=0.393 Sum_probs=69.0
Q ss_pred EEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceE
Q 030012 84 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLK 163 (184)
Q Consensus 84 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~ 163 (184)
+|||+|||+++++++|+++|++||.|.+++++.+. .+++++|||||+|.+.++|++|++ |||..+.|+. |+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~-----l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK---TTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKM-----VE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCS---SSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCC-----CE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEE-----EE
Confidence 58999999999999999999999999999988743 237899999999999999999998 9999999998 99
Q ss_pred EEee
Q 030012 164 IQFA 167 (184)
Q Consensus 164 V~~a 167 (184)
|+||
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9986
No 100
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=119.71 Aligned_cols=77 Identities=19% Similarity=0.383 Sum_probs=70.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHh-cCCeeCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL-HGYKFDDKK 156 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l-~g~~~~g~~ 156 (184)
.....++|||+|||.++++++|+++|++||.|.++++.. ++|||||+|.+.++|++|++.| +|..+.|+.
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 346678999999999999999999999999999999974 3579999999999999999999 999999997
Q ss_pred CCCCceEEEeec
Q 030012 157 PDSPTLKIQFAH 168 (184)
Q Consensus 157 ~~~~~l~V~~a~ 168 (184)
|+|+|++
T Consensus 79 -----l~v~~ak 85 (85)
T 2ytc_A 79 -----LNVKWGR 85 (85)
T ss_dssp -----CCEEECC
T ss_pred -----EEEEecC
Confidence 9999985
No 101
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=4e-19 Score=124.94 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 79 KGESNLLFVDGLPTD-CTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
...+++|||+|||++ +++++|+++|++||.|.+|++ ++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~- 91 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----------HKGYAFVQYSNERHARAAVLGENGRVLAGQT- 91 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----------ETTEEEEECSSSHHHHHHHHHHTTCEETTEE-
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCEECCeE-
Confidence 445689999999999 999999999999999999988 2469999999999999999999999999997
Q ss_pred CCCceEEEeecCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++.+....
T Consensus 92 ----l~V~~a~~~~~~~ 104 (110)
T 1wf1_A 92 ----LDINMAGEPKPDR 104 (110)
T ss_dssp ----CCEEESCCCCSCC
T ss_pred ----EEEEECCCCCCCC
Confidence 9999998655443
No 102
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.3e-19 Score=121.61 Aligned_cols=81 Identities=25% Similarity=0.364 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
..+.++|||+|||+++++++|+++|++||.|.+|++.. ++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~-- 80 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQ-- 80 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---------CCCEEEEEECCHHHHHHHHHHhCCCEeCCce--
Confidence 45678999999999999999999999999999999864 2579999999999999999999999999998
Q ss_pred CCceEEEeecCCCCC
Q 030012 159 SPTLKIQFAHFPFHL 173 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~ 173 (184)
|+|+|++.....
T Consensus 81 ---l~v~~a~~~~~~ 92 (99)
T 2cpj_A 81 ---LRVRFACHSASL 92 (99)
T ss_dssp ---CEEEESSCCSCC
T ss_pred ---EEEEEcCCCCCC
Confidence 999999875443
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=126.66 Aligned_cols=82 Identities=22% Similarity=0.390 Sum_probs=74.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||.++++++|+++|++||.|.+|+++.+. +.++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-----~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~- 98 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-----RGSKGFGFVTFENSADADRAREKLHGTVVEGRK- 98 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT-----TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE-
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC-----CCCceEEEEEECCHHHHHHHHHHcCCCEECCEE-
Confidence 34567899999999999999999999999999999998752 347899999999999999999999999999997
Q ss_pred CCCceEEEeecC
Q 030012 158 DSPTLKIQFAHF 169 (184)
Q Consensus 158 ~~~~l~V~~a~~ 169 (184)
|+|+|++.
T Consensus 99 ----l~V~~a~~ 106 (109)
T 2err_A 99 ----IEVNNATA 106 (109)
T ss_dssp ----CEEEECCC
T ss_pred ----EEEEECCC
Confidence 99999975
No 104
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=1.5e-19 Score=122.36 Aligned_cols=75 Identities=11% Similarity=0.069 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
..+.-|||+||++.+||++|+++|.+||.|.++++.. +||||||+|.+.++|++|++.||+.++.|+.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~--- 72 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---------NQGIALCKYTTREEANKAQMALNNCVLANTT--- 72 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTEEETTEE---
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---------CCcEEEEEECCHHHHHHHHHHhcCCEECCcE---
Confidence 3467899999999999999999999999999999853 5789999999999999999999999999997
Q ss_pred CceEEEeec
Q 030012 160 PTLKIQFAH 168 (184)
Q Consensus 160 ~~l~V~~a~ 168 (184)
|+|++|.
T Consensus 73 --I~V~~A~ 79 (89)
T 2wbr_A 73 --IFAESPS 79 (89)
T ss_dssp --EEEECCC
T ss_pred --EEEEECC
Confidence 9999984
No 105
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.79 E-value=1.4e-19 Score=124.20 Aligned_cols=83 Identities=22% Similarity=0.388 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH----HhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVS----HLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 154 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g 154 (184)
..++++|||+|||.++++++|+ ++|++||.|.+|++... ++++|||||+|.+.++|++|++.|||..+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFYD 78 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH------HHHTTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC------CCcCcEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 4668899999999999999999 99999999999988642 5778999999999999999999999999999
Q ss_pred CCCCCCceEEEeecCCCC
Q 030012 155 KKPDSPTLKIQFAHFPFH 172 (184)
Q Consensus 155 ~~~~~~~l~V~~a~~~~~ 172 (184)
+. |+|+|++....
T Consensus 79 ~~-----l~v~~a~~~~~ 91 (97)
T 1nu4_A 79 KP-----MRIQYAKTDSD 91 (97)
T ss_dssp EE-----CEEEECSSCCT
T ss_pred cE-----EEEEEccCCCc
Confidence 87 99999987543
No 106
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=3.2e-19 Score=125.52 Aligned_cols=80 Identities=26% Similarity=0.583 Sum_probs=71.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
....+++|||+|||+++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..+.|+.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~- 94 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----------NGFAFVEFEEAESAAKAIEEVHGKSFANQP- 94 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----------TTEEEEECSSHHHHHHHHHHHTTCEETTEE-
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHcCCCEECCeE-
Confidence 45667899999999999999999999999999999986 359999999999999999999999999997
Q ss_pred CCCceEEEeecCCCCC
Q 030012 158 DSPTLKIQFAHFPFHL 173 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~ 173 (184)
|+|+|++....+
T Consensus 95 ----l~V~~a~~~~~r 106 (108)
T 2jvo_A 95 ----LEVVYSKLPAKR 106 (108)
T ss_dssp ----CEEESCSCCC--
T ss_pred ----EEEEEecCCCCC
Confidence 999999876544
No 107
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.5e-19 Score=124.78 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCC-EEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhc--CCeeCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVG-YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH--GYKFDDKK 156 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~-i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~--g~~~~g~~ 156 (184)
.+.++|||+|||+++++++|+++|++||. |.+|+++.. .+.+++++|||||+|.+.++|++|++.|| +..+.|+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~--~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYAS--AADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSS--SCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEcc--CCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 45789999999999999999999999998 999988732 23346889999999999999999999996 59999998
Q ss_pred CCCCceEEEeecCCCC
Q 030012 157 PDSPTLKIQFAHFPFH 172 (184)
Q Consensus 157 ~~~~~l~V~~a~~~~~ 172 (184)
|+|+|++....
T Consensus 84 -----l~V~~a~~~~~ 94 (109)
T 2dis_A 84 -----IAVDWAEPEID 94 (109)
T ss_dssp -----CEEEESCSSCS
T ss_pred -----EEEEEcCCCCC
Confidence 99999986443
No 108
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.3e-19 Score=119.93 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++++++|+++|++||.|.+|++++ +||||+|.+.++|++|++.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 72 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-----------DYAFVHMEKEADAKAAIAQLNGKEVKGKR-- 72 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-----------SCEEEEESCHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCEECCcE--
Confidence 45678999999999999999999999999999999863 39999999999999999999999999997
Q ss_pred CCceEEEeecCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLP 174 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++....+.
T Consensus 73 ---l~v~~a~~~~~~~ 85 (90)
T 2dnp_A 73 ---INVELSTKGQKKS 85 (90)
T ss_dssp ---CEEEESCCCCCCC
T ss_pred ---EEEEECCCCCCCC
Confidence 9999998765444
No 109
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=119.87 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCC--CCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPF--VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~--G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
....++|||+|||+++++++|+++|++| |.|.+|++. +|||||+|.+.++|++|++.|||..+.|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4567899999999999999999999999 999998764 359999999999999999999999999997
Q ss_pred CCCCceEEEeecCCCCCC
Q 030012 157 PDSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 157 ~~~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++......
T Consensus 81 -----l~v~~a~~~~~~~ 93 (99)
T 2cpd_A 81 -----IEVTLAKPVDKDS 93 (99)
T ss_dssp -----EEEECCCCCCCCC
T ss_pred -----EEEEECCCCCCCC
Confidence 9999998755433
No 110
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=128.94 Aligned_cols=83 Identities=16% Similarity=0.214 Sum_probs=72.5
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
+....++|||+|||+++|+++|+++|+.||.|.++.++.+. ..++++|||||+|.+.++|++||+ |||..|.|+.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~---~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~- 95 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG---PNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRF- 95 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC---TTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSC-
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC---CCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcE-
Confidence 34567899999999999999999999999999885444432 237899999999999999999999 9999999998
Q ss_pred CCCceEEEeecC
Q 030012 158 DSPTLKIQFAHF 169 (184)
Q Consensus 158 ~~~~l~V~~a~~ 169 (184)
|+|.++..
T Consensus 96 ----i~V~~a~~ 103 (124)
T 1wel_A 96 ----IQVHPITK 103 (124)
T ss_dssp ----BEEEEECH
T ss_pred ----EEEEECCH
Confidence 99999863
No 111
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.9e-19 Score=121.64 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 79 KGESNLLFVDGLPT-DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 79 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
..++++|||+|||+ ++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..+.|+.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~- 74 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIECESQEMNFGKK- 74 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----------TTEEEEEESCHHHHHHHHHHHTCSSCBTTT-
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCeeCCcE-
Confidence 45678999999998 99999999999999999999884 359999999999999999999999999998
Q ss_pred CCCceEEEeecCCCCCCCCC
Q 030012 158 DSPTLKIQFAHFPFHLPSDG 177 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~~~~~~ 177 (184)
|+|+|++........+
T Consensus 75 ----l~V~~a~~~~~~~~~~ 90 (96)
T 2kvi_A 75 ----LILEVSSSNARPQFDH 90 (96)
T ss_dssp ----BCEEEEECCCC-----
T ss_pred ----EEEEEcCcCCCCCCCC
Confidence 9999998765544433
No 112
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=7.1e-19 Score=122.25 Aligned_cols=80 Identities=23% Similarity=0.420 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
..+.++|||+|||+++++++|+++|++||.|.+|++++ +||||+|.+.++|++|++.|||..+.|+.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 74 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-----------DYAFIHFDERDGAVKAMEEMNGKDLEGEN-- 74 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-----------SCEEEEESSHHHHHHHHHHHTTEEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----------CEEEEEeCCHHHHHHHHHHHCCCccCCCE--
Confidence 35578999999999999999999999999999998853 49999999999999999999999999997
Q ss_pred CCceEEEeecCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLP 174 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++....+.
T Consensus 75 ---l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 75 ---IEIVFAKPPDQKR 87 (103)
T ss_dssp ---EEEEECCCCCCCC
T ss_pred ---EEEEEcCCCcccc
Confidence 9999998755444
No 113
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.7e-19 Score=123.59 Aligned_cols=82 Identities=20% Similarity=0.326 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||.++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|++|++.|||..+.|+.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 90 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---------KGYSFVRFSTHESAAHAIVSVNGTTIEGHV-- 90 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---------CCEEEEEECCHHHHHHHHHHcCCCEECCcE--
Confidence 456789999999999999999999999999999999752 569999999999999999999999999997
Q ss_pred CCceEEEeecCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLP 174 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~ 174 (184)
|+|.|++......
T Consensus 91 ---l~v~~a~~~~~~~ 103 (109)
T 1x4g_A 91 ---VKCYWGKESPDMT 103 (109)
T ss_dssp ---CEEECCCCCCSSC
T ss_pred ---EEEEecCCCCCCC
Confidence 9999998755433
No 114
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=121.82 Aligned_cols=81 Identities=17% Similarity=0.307 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEE-EEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE-IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
....++|||+|||+++++++|+++|++||.|.+ |+|+.++ .++++|||||+|.+.++|++|++. ++..+.++.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~----~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~- 85 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF----QGRSTGEAFVQFASQEIAEKALKK-HKERIGHRY- 85 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS----SSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC----CCCcceEEEEEECCHHHHHHHHHh-CcchhCCcE-
Confidence 456789999999999999999999999999987 8887653 278999999999999999999997 999999998
Q ss_pred CCCceEEEeecC
Q 030012 158 DSPTLKIQFAHF 169 (184)
Q Consensus 158 ~~~~l~V~~a~~ 169 (184)
|+|.++..
T Consensus 86 ----i~v~~~~~ 93 (104)
T 1wg5_A 86 ----IEIFKSSR 93 (104)
T ss_dssp ----CEEEEECT
T ss_pred ----EEEEECCH
Confidence 99999864
No 115
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=128.37 Aligned_cols=81 Identities=20% Similarity=0.390 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||.++++++|+++|++||.|.+++++.+ +.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 134 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD---YETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT-- 134 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCC---TTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE--
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeec---CCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE--
Confidence 456789999999999999999999999999999999874 334788999999999999999999999999999997
Q ss_pred CCceEEEee
Q 030012 159 SPTLKIQFA 167 (184)
Q Consensus 159 ~~~l~V~~a 167 (184)
|+|+||
T Consensus 135 ---l~v~~A 140 (140)
T 2ku7_A 135 ---IRVNLA 140 (140)
T ss_dssp ---EEEEC-
T ss_pred ---EEEEeC
Confidence 999986
No 116
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-19 Score=118.73 Aligned_cols=76 Identities=21% Similarity=0.307 Sum_probs=70.1
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCce
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 162 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l 162 (184)
++|||+|||+++++++|+++|++||.|.+++++.+ +.+++++|||||+|.+.++|++|++.++ ..+.|+. |
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~-----l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD---PLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKT-----I 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECC---CCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCC-----C
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecC---CCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEE-----E
Confidence 47999999999999999999999999999999874 3347889999999999999999999999 9999998 9
Q ss_pred EEEee
Q 030012 163 KIQFA 167 (184)
Q Consensus 163 ~V~~a 167 (184)
+|+||
T Consensus 72 ~v~~a 76 (77)
T 1uaw_A 72 DPKVA 76 (77)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99987
No 117
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.78 E-value=8.5e-19 Score=120.93 Aligned_cols=78 Identities=21% Similarity=0.375 Sum_probs=71.0
Q ss_pred CCCCCCEEEEcCCCC-CCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 78 KKGESNLLFVDGLPT-DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
....+++|||+|||+ ++++++|+++|++||.|.++++. +|||||+|.+.++|++|++.|||..+.|+.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 456789999999998 99999999999999999999883 469999999999999999999999999997
Q ss_pred CCCCceEEEeecCCC
Q 030012 157 PDSPTLKIQFAHFPF 171 (184)
Q Consensus 157 ~~~~~l~V~~a~~~~ 171 (184)
|+|+|++...
T Consensus 87 -----l~V~~a~~~~ 96 (97)
T 2xnq_A 87 -----LILEVSSSNA 96 (97)
T ss_dssp -----CEEEECCCCC
T ss_pred -----EEEEecCCCC
Confidence 9999997643
No 118
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.1e-19 Score=124.71 Aligned_cols=80 Identities=14% Similarity=0.233 Sum_probs=70.6
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcC--CeeCCC
Q 030012 79 KGESNLLFVDGLPTD-CTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG--YKFDDK 155 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g--~~~~g~ 155 (184)
..++++|||+|||++ +++++|+++|++||.|.+|+|++ ++|||||+|++.++|++|++.|++ ..+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr 92 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---------MKSQAFIEMETREDAMAMVDHCLKKALWFQGR 92 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---------CCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 456889999999998 99999999999999999999963 357999999999999999998864 569999
Q ss_pred CCCCCceEEEeecCCCC
Q 030012 156 KPDSPTLKIQFAHFPFH 172 (184)
Q Consensus 156 ~~~~~~l~V~~a~~~~~ 172 (184)
. |+|+|++....
T Consensus 93 ~-----l~V~~a~~~~~ 104 (112)
T 1x4f_A 93 C-----VKVDLSEKYKK 104 (112)
T ss_dssp C-----CEEEEECSCSS
T ss_pred E-----EEEEECccccc
Confidence 7 99999975443
No 119
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=4.5e-19 Score=122.66 Aligned_cols=76 Identities=21% Similarity=0.350 Sum_probs=70.5
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCce
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 162 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l 162 (184)
++|||+|||+++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-----l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSR-----V 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCC-----C
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--------CCCEEEEEECCHHHHHHHHHHHCCCeECCcE-----E
Confidence 48999999999999999999999999999999763 4679999999999999999999999999998 9
Q ss_pred EEEeecCCC
Q 030012 163 KIQFAHFPF 171 (184)
Q Consensus 163 ~V~~a~~~~ 171 (184)
+|+|++...
T Consensus 68 ~V~~a~~~~ 76 (101)
T 2hvz_A 68 RVELSTGMP 76 (101)
T ss_dssp EEEESSSCC
T ss_pred EEEEccCCC
Confidence 999998654
No 120
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=3.7e-19 Score=127.06 Aligned_cols=80 Identities=18% Similarity=0.297 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCC---EEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVG---YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.+.. ++++|||||+|.+.++|++|++ +|+..+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 88 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE----GRQSGEAFVELESEDDVKLALK-KDRESMGHR 88 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS----SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe
Confidence 456789999999999999999999999999 89999988532 7899999999999999999999 999999999
Q ss_pred CCCCCceEEEeec
Q 030012 156 KPDSPTLKIQFAH 168 (184)
Q Consensus 156 ~~~~~~l~V~~a~ 168 (184)
. |+|.++.
T Consensus 89 ~-----i~V~~a~ 96 (118)
T 2db1_A 89 Y-----IEVFKSH 96 (118)
T ss_dssp E-----EEEEEEC
T ss_pred E-----EEEEECC
Confidence 7 9999985
No 121
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=6.9e-20 Score=124.17 Aligned_cols=81 Identities=20% Similarity=0.307 Sum_probs=70.8
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCce
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 162 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l 162 (184)
++|||+|||.++++++|+++|++||.|.+++++.+ +.+++++|||||+|.+.+ |++|++.|||..+.|+. |
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~-----l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYD---RETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRT-----I 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCC---SSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSS-----C
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEc---CCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeE-----E
Confidence 58999999999999999999999999999999874 333788999999999999 99999999999999998 9
Q ss_pred EEEeecCCCC
Q 030012 163 KIQFAHFPFH 172 (184)
Q Consensus 163 ~V~~a~~~~~ 172 (184)
+|+||.....
T Consensus 73 ~V~~a~~~~~ 82 (90)
T 2ki2_A 73 RVTEANPKKS 82 (90)
T ss_dssp SEEEC-----
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 122
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-19 Score=119.62 Aligned_cols=73 Identities=21% Similarity=0.397 Sum_probs=66.1
Q ss_pred CCEEEEcCCCCCC------cHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 82 SNLLFVDGLPTDC------TRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 82 ~~~lfVgnLp~~~------te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
+++|||+|||..+ ++++|+++|++||.|.++++.. + .|+++|||||+|.+.++|++|++.|||..+.|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~-~----~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-E----DGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC-B----TTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC-C----CCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 4789999999999 7899999999999999999862 2 278899999999999999999999999999998
Q ss_pred -CCCCCceEE
Q 030012 156 -KPDSPTLKI 164 (184)
Q Consensus 156 -~~~~~~l~V 164 (184)
. |+|
T Consensus 76 ~~-----l~V 80 (81)
T 2krb_A 76 HT-----FRV 80 (81)
T ss_dssp SC-----CCC
T ss_pred ee-----EEe
Confidence 6 765
No 123
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.7e-19 Score=123.81 Aligned_cols=77 Identities=17% Similarity=0.337 Sum_probs=70.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
...+++|||+|||.++++++|+++|++||.|.++++.. ++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-- 92 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP---------EKGCCFIKYDTHEQAAVCIVALANFPFQGRN-- 92 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec---------CCCEEEEEECCHHHHHHHHHHhCCCeECCeE--
Confidence 34568999999999999999999999999999999862 4579999999999999999999999999997
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
|+|.|++.
T Consensus 93 ---l~V~~a~~ 100 (101)
T 2la4_A 93 ---LRTGWGKE 100 (101)
T ss_dssp ---CCCCBCCC
T ss_pred ---EEEEeccC
Confidence 99999874
No 124
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=4.5e-19 Score=140.45 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCC--CEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFV--GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
..++|||+||++++|+++|+++|++|| .|++|+|+.+ +.+++++|||||+|.+.++|++||+.|||..|.|+.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d---~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~-- 141 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN---RANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN-- 141 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEEC---TTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBC--
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEec---CCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEE--
Confidence 567999999999999999999999999 9999999985 334899999999999999999999999999999998
Q ss_pred CCceEEEeec
Q 030012 159 SPTLKIQFAH 168 (184)
Q Consensus 159 ~~~l~V~~a~ 168 (184)
|+|+|++
T Consensus 142 ---l~V~~a~ 148 (229)
T 3q2s_C 142 ---PVVTPVN 148 (229)
T ss_dssp ---CEEEECC
T ss_pred ---eEEEECC
Confidence 9999985
No 125
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.7e-19 Score=125.56 Aligned_cols=81 Identities=12% Similarity=0.236 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCE-EEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGY-REIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i-~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
....++|||+|||+++|+++|+++|+.||.| .+|+|+.+. .++++|||||+|.+.++|++|++. |+..|.|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~----~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~- 85 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN----NGQGLGQALVQFKNEDDARKSERL-HRKKLNGRE- 85 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT----TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEE-
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC----CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeE-
Confidence 4567899999999999999999999999999 889998753 378999999999999999999987 999999997
Q ss_pred CCCceEEEeecC
Q 030012 158 DSPTLKIQFAHF 169 (184)
Q Consensus 158 ~~~~l~V~~a~~ 169 (184)
|+|.++..
T Consensus 86 ----i~v~~a~~ 93 (114)
T 2cpy_A 86 ----AFVHVVTL 93 (114)
T ss_dssp ----EEEEEECH
T ss_pred ----EEEEECCH
Confidence 99999864
No 126
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=8e-19 Score=120.23 Aligned_cols=82 Identities=13% Similarity=0.261 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++++++|+++|++||.|..+ . . .++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~-~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 82 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---S-Q----DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS-- 82 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---E-E----TTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---C-C----CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE--
Confidence 4567899999999999999999999999988766 1 1 1688999999999999999999999999999997
Q ss_pred CCceEEEeecCCCCC
Q 030012 159 SPTLKIQFAHFPFHL 173 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~ 173 (184)
|+|+|++...+.
T Consensus 83 ---l~v~~a~~~~~~ 94 (96)
T 1fjc_A 83 ---VSLYYTGEKGGT 94 (96)
T ss_dssp ---EEEEECSSSCCC
T ss_pred ---EEEEEcCCCCCC
Confidence 999999765543
No 127
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.4e-18 Score=117.52 Aligned_cols=80 Identities=24% Similarity=0.326 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|| ++++++|+++|++||.|.+|++. +++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~-- 78 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQ-- 78 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEE--
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeE--
Confidence 456789999996 89999999999999999999984 34679999999999999999999999999997
Q ss_pred CCceEEEeecCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLP 174 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++......
T Consensus 79 ---l~v~~a~~~~~~~ 91 (97)
T 1x5p_A 79 ---LKVNIARKQPMLD 91 (97)
T ss_dssp ---EEEECCSSCCCCC
T ss_pred ---EEEEECCCCCCCC
Confidence 9999998755433
No 128
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.4e-19 Score=119.81 Aligned_cols=81 Identities=17% Similarity=0.267 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCC-EEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcC-CeeCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVG-YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG-YKFDDKK 156 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~-i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g-~~~~g~~ 156 (184)
....++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..+.|+.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 74 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKI 74 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----------CCCEEEEEECCHHHHHHHHHHccCCeeECCEE
Confidence 356789999999999999999999999999 5555552 356999999999999999999999 9999997
Q ss_pred CCCCceEEEeecCCCCCC
Q 030012 157 PDSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 157 ~~~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++....+.
T Consensus 75 -----l~v~~a~~~~~~~ 87 (93)
T 2cqh_A 75 -----MEVDYSVSKKLRS 87 (93)
T ss_dssp -----CEEEECCCCCCCC
T ss_pred -----EEEEEccCccccC
Confidence 9999998755443
No 129
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=5.3e-19 Score=129.51 Aligned_cols=80 Identities=18% Similarity=0.281 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCC---EEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVG---YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
....++|||+|||+++|+++|+++|++||. |.+|+|+.+. . |+++|||||+|.+.++|++|++ ||+..+.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~---~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR---E-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECS---S-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECC---C-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 456789999999999999999999999999 8899998853 3 7899999999999999999999 999999999
Q ss_pred CCCCCceEEEeec
Q 030012 156 KPDSPTLKIQFAH 168 (184)
Q Consensus 156 ~~~~~~l~V~~a~ 168 (184)
. |+|.++.
T Consensus 116 ~-----i~V~~a~ 123 (136)
T 2hgl_A 116 Y-----IEVFKSH 123 (136)
T ss_dssp E-----EEEEECC
T ss_pred E-----EEEEECC
Confidence 7 9999985
No 130
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=9.2e-20 Score=126.18 Aligned_cols=86 Identities=13% Similarity=0.156 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++++++|+++|++||.|.+ .++.+ +..++++|||||+|.+.++|++|++ |||..+.|+.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~---~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~-- 86 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVD---VRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNE-- 86 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCE---EEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEec---CCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcE--
Confidence 345789999999999999999999999999877 34332 1226789999999999999999998 9999999998
Q ss_pred CCceEEEeecCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLP 174 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~ 174 (184)
|+|+|++....++
T Consensus 87 ---l~V~~a~~~~~~~ 99 (101)
T 1fj7_A 87 ---IKLEKPKGRDGTR 99 (101)
T ss_dssp ---CEEECCSCCCCSS
T ss_pred ---EEEEEcCCCCCCC
Confidence 9999998654443
No 131
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=2.5e-18 Score=129.26 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC--CCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD--KKPD 158 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g--~~~~ 158 (184)
...+|||+||++.+|+++|+++|++||.|++|++..+ +++|||||+|++.++|++|++.|||..|.+ +.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-------~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~-- 115 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT-- 115 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-------SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSC--
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-------CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcE--
Confidence 3457999999999999999999999999999998752 246899999999999999999999999976 66
Q ss_pred CCceEEEeecCCC
Q 030012 159 SPTLKIQFAHFPF 171 (184)
Q Consensus 159 ~~~l~V~~a~~~~ 171 (184)
|+|+|++...
T Consensus 116 ---L~V~~Ak~~~ 125 (164)
T 1sjr_A 116 ---LRIDFSKLTS 125 (164)
T ss_dssp ---EEEEECSSSS
T ss_pred ---EEEEEecCCc
Confidence 9999998643
No 132
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.7e-19 Score=123.56 Aligned_cols=77 Identities=22% Similarity=0.326 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
...++|||+|||+++++++|+++|++||.|.+|++.. ++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~--- 75 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---------GGITAIVEFLEPLEARKAFRHLAYSKFHHVP--- 75 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSB---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeE---
Confidence 3467999999999999999999999999999998853 4579999999999999999999999999997
Q ss_pred CceEEEeecCC
Q 030012 160 PTLKIQFAHFP 170 (184)
Q Consensus 160 ~~l~V~~a~~~ 170 (184)
|+|+|++..
T Consensus 76 --l~V~~a~~~ 84 (111)
T 1whx_A 76 --LYLEWAPIG 84 (111)
T ss_dssp --CEEEEEETT
T ss_pred --EEEEECCCC
Confidence 999999753
No 133
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-20 Score=132.47 Aligned_cols=87 Identities=26% Similarity=0.435 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEE--------EEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--------IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY 150 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--------v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~ 150 (184)
..+.++|||+|||.++++++|+++|++||.|.+ |+++.+ +.+++++|||||+|.+.++|++|++.|||.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~---~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD---RETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 456789999999999999999999999999998 888764 233788999999999999999999999999
Q ss_pred eeCCCCCCCCceEEEeecCCCCC
Q 030012 151 KFDDKKPDSPTLKIQFAHFPFHL 173 (184)
Q Consensus 151 ~~~g~~~~~~~l~V~~a~~~~~~ 173 (184)
.+.|+. |+|+|++.....
T Consensus 81 ~~~g~~-----l~V~~a~~~~~~ 98 (116)
T 2lcw_A 81 EFSGNP-----IKVSFATRRADF 98 (116)
Confidence 999998 999999764433
No 134
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=1.8e-18 Score=127.93 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=73.9
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 139 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--------PPGFAFVEFEDPRDAADAVRELDGRTLCGCR- 139 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSC-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--------CCcEEEEEECCHHHHHHHHHHcCCCEECCeE-
Confidence 3456789999999999999999999999999999999753 4679999999999999999999999999997
Q ss_pred CCCceEEEeecCCC
Q 030012 158 DSPTLKIQFAHFPF 171 (184)
Q Consensus 158 ~~~~l~V~~a~~~~ 171 (184)
|+|+|++..+
T Consensus 140 ----l~v~~a~~~~ 149 (150)
T 2i2y_A 140 ----VRVELSNGEK 149 (150)
T ss_dssp ----CEEEECCCCC
T ss_pred ----EEEEEcCCCC
Confidence 9999998754
No 135
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=127.98 Aligned_cols=85 Identities=20% Similarity=0.370 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEE--------EEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--------IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY 150 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--------v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~ 150 (184)
..++++|||+|||+++|+++|+++|++||.|.+ +++.. +++++|||||+|.+.++|++|++.|||.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~------~g~~~g~afV~f~~~~~A~~Ai~~lng~ 115 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK------EGRMKGQAFIGLPNEKAAAKALKEANGY 115 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE------ETTTEEEEEEECSSHHHHHHHHHHHTTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc------CCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 456789999999999999999999999999876 33332 2688999999999999999999999999
Q ss_pred eeCCCCCCCCceEEEeecCCCCCC
Q 030012 151 KFDDKKPDSPTLKIQFAHFPFHLP 174 (184)
Q Consensus 151 ~~~g~~~~~~~l~V~~a~~~~~~~ 174 (184)
.+.|+. |+|+|++....+.
T Consensus 116 ~~~g~~-----l~V~~a~~~~~~~ 134 (143)
T 3egn_A 116 VLFGKP-----MVVQFARSARPKQ 134 (143)
T ss_dssp EETTEE-----CEEEECCCSCC--
T ss_pred EeCCcE-----EEEEECCCCCCcc
Confidence 999997 9999998754433
No 136
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=122.60 Aligned_cols=78 Identities=14% Similarity=0.227 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
....+|||+|||++++++||+++|+.| .|.+|+|+.+. . |+++|||||+|.+.++|++|+ .+|+..+.|+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~---~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~--- 84 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH---V-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRY--- 84 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT---T-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEE---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC---C-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeE---
Confidence 445799999999999999999999999 89999998753 2 788999999999999999999 69999999997
Q ss_pred CceEEEeec
Q 030012 160 PTLKIQFAH 168 (184)
Q Consensus 160 ~~l~V~~a~ 168 (184)
|.|..+.
T Consensus 85 --i~V~~a~ 91 (109)
T 2dnn_A 85 --VEVSPAT 91 (109)
T ss_dssp --EEEEECC
T ss_pred --EEEEECC
Confidence 9998875
No 137
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=8e-19 Score=123.02 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=73.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCC---EEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVG---YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 154 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g 154 (184)
.....++|||+|||+++|+++|+++|+.||. |.+|+|+.+. . |+++|||||+|.+.++|++|++ +|+..+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~---~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g 81 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR---D-GKRRGDALIEMESEQDVQKALE-KHRMYMGQ 81 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT---T-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC---C-CCEeeEEEEEECCHHHHHHHHH-hCcceeCC
Confidence 3466789999999999999999999999988 8999998743 3 7899999999999999999999 99999999
Q ss_pred CCCCCCceEEEeecC
Q 030012 155 KKPDSPTLKIQFAHF 169 (184)
Q Consensus 155 ~~~~~~~l~V~~a~~ 169 (184)
+. |+|.++..
T Consensus 82 r~-----i~V~~a~~ 91 (107)
T 2lmi_A 82 RY-----VEVYEINN 91 (107)
T ss_dssp SC-----CCCEECCH
T ss_pred eE-----EEEEECCH
Confidence 98 99999863
No 138
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.76 E-value=6.3e-18 Score=122.69 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=68.4
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceE-EEEEECCHHHHHHHHHHhcCCeeCC--CCCCC
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVL-CFVEFDDPKCARTAMDALHGYKFDD--KKPDS 159 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~-afV~F~~~~~A~~Ai~~l~g~~~~g--~~~~~ 159 (184)
-.|||+||++.+|+++|+++|++||.|.+|++..+ .+|| |||+|.+.++|++|++.|||..|.+ +.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--------~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~--- 97 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT--- 97 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--------TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE---
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--------CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE---
Confidence 47889999999999999999999999999988753 2467 9999999999999999999999998 54
Q ss_pred CceEEEeecCCC
Q 030012 160 PTLKIQFAHFPF 171 (184)
Q Consensus 160 ~~l~V~~a~~~~ 171 (184)
|+|+|++...
T Consensus 98 --LrI~~ak~~~ 107 (130)
T 3zzy_A 98 --LRIDFSKLTS 107 (130)
T ss_dssp --EEEEECSCSS
T ss_pred --EEEEecCCCc
Confidence 9999998654
No 139
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=4.3e-19 Score=130.48 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++||+||+++|++|| |++|+|+.++ . ++++|||||+|.+.++|++|| .+|+..+.++.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~---~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~-- 114 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP---D-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRY-- 114 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS---S-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC---C-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEE--
Confidence 45578999999999999999999999999 7799998753 2 789999999999999999999 78999999998
Q ss_pred CCceEEEeecCCCCCCC
Q 030012 159 SPTLKIQFAHFPFHLPS 175 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~~~ 175 (184)
|+|.++.......+
T Consensus 115 ---i~V~~a~~~~~~~~ 128 (139)
T 2hgn_A 115 ---IELFLNSTTGASNG 128 (139)
T ss_dssp ---CCCEECCCSCC---
T ss_pred ---EEEEECCCCCCCCC
Confidence 99999876554433
No 140
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.75 E-value=5.2e-18 Score=132.23 Aligned_cols=84 Identities=23% Similarity=0.290 Sum_probs=74.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
..+.++|||+|||+++||++|+++|++||.|++|+|+.+ +.+++++|||||+|.+.++|++|++.+++..+.|+.
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d---~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~-- 86 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD---MITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP-- 86 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC---TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecc---cCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc--
Confidence 345689999999999999999999999999999999984 334789999999999999999999999999999997
Q ss_pred CCceEEEeecCC
Q 030012 159 SPTLKIQFAHFP 170 (184)
Q Consensus 159 ~~~l~V~~a~~~ 170 (184)
|++.++...
T Consensus 87 ---i~~~~~~~~ 95 (213)
T 4f02_A 87 ---VRIMWSQRD 95 (213)
T ss_dssp ---CEEEECCCC
T ss_pred ---ccccccccc
Confidence 999998653
No 141
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=4.8e-18 Score=120.65 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
...++|||+|||+++++++|+++|++||.|.+|+|+.+ |||||+|.+.++|++||+.|||.+|.|+....
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 45789999999999999999999999999999998642 69999999999999999999999999986333
Q ss_pred CceEEEeecC
Q 030012 160 PTLKIQFAHF 169 (184)
Q Consensus 160 ~~l~V~~a~~ 169 (184)
.-|+|..++.
T Consensus 84 ~~i~v~~~~~ 93 (115)
T 3beg_B 84 AYIRVKVDGP 93 (115)
T ss_dssp CBCEEEECC-
T ss_pred EEEEeccCCC
Confidence 4467777654
No 142
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=4.8e-19 Score=115.91 Aligned_cols=75 Identities=20% Similarity=0.360 Sum_probs=68.1
Q ss_pred EEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceE
Q 030012 84 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLK 163 (184)
Q Consensus 84 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~ 163 (184)
+|||+|||+++++++|+++|++||.|.+++++.+ +.+++++|||||+|.+.++|++|++ +++..+.|+. |+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~-----l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD---NKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSK-----CE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCS---CCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBC-----CC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec---CCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEE-----EE
Confidence 6899999999999999999999999999998764 3347889999999999999999998 4999999998 99
Q ss_pred EEee
Q 030012 164 IQFA 167 (184)
Q Consensus 164 V~~a 167 (184)
|++|
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9885
No 143
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.75 E-value=3.3e-18 Score=130.44 Aligned_cols=84 Identities=20% Similarity=0.261 Sum_probs=76.6
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
....+++|||+|||+++++++|+++|++||.|++|+|+.+. .++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~----~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~- 158 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR----SGRSLGTADVHFERRADALKAMKQYKGVPLDGRP- 158 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT----TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC----CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE-
Confidence 34567899999999999999999999999999999998753 3788999999999999999999999999999997
Q ss_pred CCCceEEEeecCC
Q 030012 158 DSPTLKIQFAHFP 170 (184)
Q Consensus 158 ~~~~l~V~~a~~~ 170 (184)
|+|+|+...
T Consensus 159 ----l~V~~a~~~ 167 (177)
T 2f3j_A 159 ----MDIQLVASQ 167 (177)
T ss_dssp ----CEEEEESSG
T ss_pred ----EEEEEecCC
Confidence 999999753
No 144
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.75 E-value=3.7e-18 Score=115.40 Aligned_cols=76 Identities=26% Similarity=0.392 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
..+++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~--- 69 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKD--- 69 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEE---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcE---
Confidence 346899999999999999999999999 99999883 45789999999999999999999999999997
Q ss_pred CceEEEeecCC
Q 030012 160 PTLKIQFAHFP 170 (184)
Q Consensus 160 ~~l~V~~a~~~ 170 (184)
|+|+|+...
T Consensus 70 --l~V~~a~~~ 78 (88)
T 1wg1_A 70 --LIVQLQPTD 78 (88)
T ss_dssp --EEEEECCCC
T ss_pred --EEEEEcCCC
Confidence 999999653
No 145
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.75 E-value=5e-18 Score=121.80 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
...+++|||+|| ++++++|+++|++||.|.+|++. +++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~-- 102 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQ-- 102 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB--
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeE--
Confidence 456789999996 69999999999999999999985 34679999999999999999999999999997
Q ss_pred CCceEEEeecCCCCC
Q 030012 159 SPTLKIQFAHFPFHL 173 (184)
Q Consensus 159 ~~~l~V~~a~~~~~~ 173 (184)
|+|+|++.....
T Consensus 103 ---l~V~~a~~~~~~ 114 (121)
T 2bz2_A 103 ---LKVNIARKQPML 114 (121)
T ss_dssp ---CEEEECCSSCC-
T ss_pred ---EEEEEeCCCCCC
Confidence 999999875443
No 146
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.3e-17 Score=122.18 Aligned_cols=82 Identities=23% Similarity=0.397 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||.++++++|+++|++||.|.+++++.+. .+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 158 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM---QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP-- 158 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECT---TTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE--
Confidence 4567899999999999999999999999999999998753 33789999999999999999999999999999997
Q ss_pred CCceEEEeec
Q 030012 159 SPTLKIQFAH 168 (184)
Q Consensus 159 ~~~l~V~~a~ 168 (184)
|+|+||+
T Consensus 159 ---i~v~~a~ 165 (166)
T 3md3_A 159 ---LRINWAA 165 (166)
T ss_dssp ---CEEEESC
T ss_pred ---EEEEecC
Confidence 9999986
No 147
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=1.6e-18 Score=120.13 Aligned_cols=80 Identities=23% Similarity=0.323 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
...+++|||+|||+++++++|+++|++||.|.+|+++.+. .++++|||||+|.+.++|++|++ ++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~-- 77 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR----TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKK-- 77 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT----TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC----CCCccceEEEEECCHHHHHHHHh--CCCeECCEE--
Confidence 4456899999999999999999999999999999999853 37899999999999999999998 999999997
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
|.|.++..
T Consensus 78 ---l~v~~a~~ 85 (102)
T 2xs2_A 78 ---LKLGPAIR 85 (102)
T ss_dssp ---CEEEEEEE
T ss_pred ---EEEEECCc
Confidence 99999864
No 148
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.74 E-value=1.7e-17 Score=123.00 Aligned_cols=82 Identities=24% Similarity=0.435 Sum_probs=75.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCc
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 161 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~ 161 (184)
+++|||+|||+++++++|+++|+.||.|.+++++.+. ..++++|||||+|.+.++|++|++.|+|..+.|+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~----- 73 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK---ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT----- 73 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-----
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce-----
Confidence 5899999999999999999999999999999998853 23789999999999999999999999999999997
Q ss_pred eEEEeecCCC
Q 030012 162 LKIQFAHFPF 171 (184)
Q Consensus 162 l~V~~a~~~~ 171 (184)
|+|.|++...
T Consensus 74 l~v~~~~~~~ 83 (167)
T 1fxl_A 74 IKVSYARPSS 83 (167)
T ss_dssp CEEEECCCCC
T ss_pred EEEEecCCCc
Confidence 9999997543
No 149
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=3.4e-17 Score=118.06 Aligned_cols=80 Identities=25% Similarity=0.307 Sum_probs=68.3
Q ss_pred CCCC--EEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceE-EEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 80 GESN--LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVL-CFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 80 ~~~~--~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~-afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
.+++ .|||+||++.+++++|+++|++||.|.+|++... .|| |||+|.+.++|+.|++.|||..|.|+
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~- 90 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---------NGIQAMVEFESVLCAQKAKAALNGADIYAG- 90 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---------SSEEEEEEESSHHHHHHHHHHHTTCCCBTT-
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCEecCC-
Confidence 3444 4689999999999999999999999999998641 166 99999999999999999999999883
Q ss_pred CCCCceEEEeecCCC
Q 030012 157 PDSPTLKIQFAHFPF 171 (184)
Q Consensus 157 ~~~~~l~V~~a~~~~ 171 (184)
.++|+|+||+...
T Consensus 91 --~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 91 --CCTLKIEYARPTR 103 (124)
T ss_dssp --BSEEEEECCSCSC
T ss_pred --CeEEEEEEecCCc
Confidence 1249999998654
No 150
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=2.4e-17 Score=127.45 Aligned_cols=86 Identities=14% Similarity=0.289 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
...++|||+|||.++++++|+++|++||.|.+++++.+. .+++++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~--- 196 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDP---TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY--- 196 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSB---
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecC---CCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcE---
Confidence 456899999999999999999999999999999998853 23789999999999999999999999999999997
Q ss_pred CceEEEeecCCCCC
Q 030012 160 PTLKIQFAHFPFHL 173 (184)
Q Consensus 160 ~~l~V~~a~~~~~~ 173 (184)
|+|.|++.+...
T Consensus 197 --i~V~~a~~~~~~ 208 (216)
T 2qfj_A 197 --LRVGKAVTPPMP 208 (216)
T ss_dssp --CEEEECSSCSST
T ss_pred --EEEEEecCCCCC
Confidence 999999876433
No 151
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.74 E-value=1.1e-17 Score=124.34 Aligned_cols=84 Identities=26% Similarity=0.381 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
++++|||+|||+++++++|+++|++||.|.+++++.+. .+++++|||||+|.+.++|++|++.|+|..+.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~---- 74 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY---KTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR---- 74 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET---TTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE----
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeC---CCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcE----
Confidence 46899999999999999999999999999999998753 23789999999999999999999999999999997
Q ss_pred ceEEEeecCCCC
Q 030012 161 TLKIQFAHFPFH 172 (184)
Q Consensus 161 ~l~V~~a~~~~~ 172 (184)
|+|.|++....
T Consensus 75 -l~v~~~~~~~~ 85 (168)
T 1b7f_A 75 -LKVSYARPGGE 85 (168)
T ss_dssp -CEEEECCCCSS
T ss_pred -EEEEecCCCcc
Confidence 99999976543
No 152
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=113.88 Aligned_cols=80 Identities=16% Similarity=0.275 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEE-EeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIR-VIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~-l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
...+++|||+|||+++++++|+++|++||.|.+|+ ++.+. ..|.|||+|.+.++|++|++.|||..+.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-------~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~- 83 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-------ETAVVNVTYSSKDQARQALDKLNGFQLENFT- 83 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-------SSEEEEEEESSHHHHHHHHHHHTTCBCSSCB-
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-------CCCEEEEEECCHHHHHHHHHHhCCCEECCcE-
Confidence 34578999999999999999999999999999995 65531 2235999999999999999999999999997
Q ss_pred CCCceEEEeecCC
Q 030012 158 DSPTLKIQFAHFP 170 (184)
Q Consensus 158 ~~~~l~V~~a~~~ 170 (184)
|+|+|++..
T Consensus 84 ----l~V~~a~~~ 92 (96)
T 2e44_A 84 ----LKVAYIPDE 92 (96)
T ss_dssp ----CEEEECCCC
T ss_pred ----EEEEEcCcc
Confidence 999999764
No 153
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.2e-18 Score=119.49 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=67.9
Q ss_pred CCCCCEEEE--cCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCee----
Q 030012 79 KGESNLLFV--DGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKF---- 152 (184)
Q Consensus 79 ~~~~~~lfV--gnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~---- 152 (184)
..++++||| +||++++++++|+++|++||.|.+|.+.. .||||||+|.+.++|++|++.|||.++
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---------TCSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 456789999 78999999999999999999999988752 257999999999999999999999988
Q ss_pred -CCCCCCCCceEEEeecC
Q 030012 153 -DDKKPDSPTLKIQFAHF 169 (184)
Q Consensus 153 -~g~~~~~~~l~V~~a~~ 169 (184)
.++ +|.|.|++.
T Consensus 93 g~g~-----~l~v~~a~~ 105 (114)
T 2cq2_A 93 GQKI-----TLYLNFVEK 105 (114)
T ss_dssp SCEE-----ECEEEEESC
T ss_pred CCCc-----EEEEEeccc
Confidence 444 499999975
No 154
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.73 E-value=4.2e-17 Score=124.49 Aligned_cols=86 Identities=23% Similarity=0.380 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||.++++++|+++|++||.|.++++..+. ..++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 185 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS---ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK-- 185 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT---TTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC---CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE--
Confidence 3567899999999999999999999999999999998753 23789999999999999999999999999999997
Q ss_pred CCceEEEeecCCCC
Q 030012 159 SPTLKIQFAHFPFH 172 (184)
Q Consensus 159 ~~~l~V~~a~~~~~ 172 (184)
|+|+|++...+
T Consensus 186 ---l~v~~a~~~~~ 196 (198)
T 2yh0_A 186 ---LLVQRASVGAK 196 (198)
T ss_dssp ---CEEEESCCCCC
T ss_pred ---EEEEECCCCCC
Confidence 99999987554
No 155
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.73 E-value=2.4e-17 Score=141.72 Aligned_cols=83 Identities=16% Similarity=0.298 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
..+.++|||+|||+.+|+++|+++|++||.|+.|.|+.+ +.+++++|||||+|.+.++|++||+.|||..|.|+.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d---~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~-- 173 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYS---KRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR-- 173 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeecc---CCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEE--
Confidence 355689999999999999999999999999999999874 234789999999999999999999999999999997
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
|+|.|++.
T Consensus 174 ---i~V~~a~~ 181 (437)
T 3pgw_S 174 ---VLVDVERG 181 (437)
T ss_pred ---EEEEEeCC
Confidence 99999975
No 156
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.3e-18 Score=122.63 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCE----EEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGY----REIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i----~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
....+|||+|||+++|++||+++|++||.| .+|+|+.++ +|+++|||||+|.+.++|++|++. |+..+.++
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~----~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP----DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT----TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC----CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 457899999999999999999999999875 688888753 278999999999999999999986 99999998
Q ss_pred CCCCCceEEEeec
Q 030012 156 KPDSPTLKIQFAH 168 (184)
Q Consensus 156 ~~~~~~l~V~~a~ 168 (184)
. |+|..+.
T Consensus 96 ~-----i~V~~a~ 103 (123)
T 2dha_A 96 Y-----IELFRST 103 (123)
T ss_dssp E-----ECCEEEC
T ss_pred E-----EEEEECC
Confidence 7 9988874
No 157
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.72 E-value=2.6e-17 Score=128.16 Aligned_cols=77 Identities=18% Similarity=0.268 Sum_probs=70.9
Q ss_pred CCCEEEEcCCC-CCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 81 ESNLLFVDGLP-TDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 81 ~~~~lfVgnLp-~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
++++|||+||| +.+++++|+++|++||.|.+|+++.+ .+|||||+|.+.++|++|++.|||..+.|+.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--------~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~--- 71 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--------KPGAAMVEMADGYAVDRAITHLNNNFMFGQK--- 71 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--------STTCEEEEESSHHHHHHHHHHHTTCEETTEE---
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--------CCCEEEEEECCHHHHHHHHHHhCCCEECCce---
Confidence 57899999999 89999999999999999999999752 3579999999999999999999999999997
Q ss_pred CceEEEeecCC
Q 030012 160 PTLKIQFAHFP 170 (184)
Q Consensus 160 ~~l~V~~a~~~ 170 (184)
|+|.|++..
T Consensus 72 --l~v~~s~~~ 80 (205)
T 3tyt_A 72 --MNVCVSKQP 80 (205)
T ss_dssp --CEEEECSCS
T ss_pred --EEEEEccCC
Confidence 999999753
No 158
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=112.22 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=67.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
...++|||+|||+++++++|+++|++||.|.+| +... ..++ ||||+|.+.++|++|++ |||..+.|+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~----~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~--- 73 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDK----DKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHR--- 73 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECS----SSCC---EEEEEESSHHHHHHHHT-CSCCEETTEE---
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcC----CCCc---EEEEEECCHHHHHHHHh-cCCeEECCEE---
Confidence 456799999999999999999999999999998 3322 1233 99999999999999999 9999999997
Q ss_pred CceEEEeecCCC
Q 030012 160 PTLKIQFAHFPF 171 (184)
Q Consensus 160 ~~l~V~~a~~~~ 171 (184)
|+|+++....
T Consensus 74 --l~V~~a~~~~ 83 (94)
T 2e5g_A 74 --LRVRPREQKE 83 (94)
T ss_dssp --CCCBCSCCSC
T ss_pred --EEEEECCcCC
Confidence 9999986533
No 159
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=1e-17 Score=121.07 Aligned_cols=79 Identities=18% Similarity=0.340 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEE--EEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYR--EIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 156 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 156 (184)
....++|||+|||+++|+++|+++|++| .|+ +|+|+.+. . |+++|||||+|.+.++|++|++ +++..+.|+.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~---~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~ 112 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDP---E-GKITGEAFVQFASQELAEKALG-KHKERIGHRY 112 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCS---S-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECC---C-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEE
Confidence 3456899999999999999999999999 787 89888743 3 7899999999999999999998 4789999997
Q ss_pred CCCCceEEEeec
Q 030012 157 PDSPTLKIQFAH 168 (184)
Q Consensus 157 ~~~~~l~V~~a~ 168 (184)
|+|.++.
T Consensus 113 -----I~V~~a~ 119 (126)
T 2hgm_A 113 -----IEVFKSS 119 (126)
T ss_dssp -----CCCEEEC
T ss_pred -----EEEEECC
Confidence 9998874
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=2.6e-17 Score=128.22 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
..++|||+|||+++++++|+++|++||.|.+|+|+.++ +.++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-----~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~---- 172 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK---- 172 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE----
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-----CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEE----
Confidence 45799999999999999999999999999999998753 357999999999999999999999999999997
Q ss_pred ceEEEeecC
Q 030012 161 TLKIQFAHF 169 (184)
Q Consensus 161 ~l~V~~a~~ 169 (184)
|+|.|++.
T Consensus 173 -i~V~~a~~ 180 (213)
T 4f02_A 173 -VFVGRFKS 180 (213)
T ss_dssp -CEEEECCC
T ss_pred -EEEEEcCC
Confidence 99999964
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.8e-17 Score=121.68 Aligned_cols=81 Identities=20% Similarity=0.357 Sum_probs=73.6
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCce
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 162 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l 162 (184)
++|||+|||.++|+++|+++|++||.|.+++++.+.. ++++|||||+|.+.++|++|++.|+|..+.|+. |
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~-----i 71 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN----NKNVNYAFVEYHQSHDANIALQTLNGKQIENNI-----V 71 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-----CCEEEEEEEESSHHHHHHHHHHHTTCEETTEE-----C
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC----CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCe-----e
Confidence 5899999999999999999999999999999987543 578999999999999999999999999999997 9
Q ss_pred EEEeecCCCC
Q 030012 163 KIQFAHFPFH 172 (184)
Q Consensus 163 ~V~~a~~~~~ 172 (184)
+|.|+.....
T Consensus 72 ~v~~~~~~~~ 81 (166)
T 3md3_A 72 KINWAFQSQQ 81 (166)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 162
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=2.7e-17 Score=122.98 Aligned_cols=84 Identities=24% Similarity=0.384 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||..+|+++|+++|++||.|.++++..+.. ++++|||||+|.+.++|++|++.|||..+.+..
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~-- 165 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD----GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGC-- 165 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTC--
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC----CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCC--
Confidence 34678999999999999999999999999999999988532 789999999999999999999999998887510
Q ss_pred CCceEEEeec
Q 030012 159 SPTLKIQFAH 168 (184)
Q Consensus 159 ~~~l~V~~a~ 168 (184)
..+|+|.||.
T Consensus 166 ~~~l~V~~ad 175 (175)
T 3nmr_A 166 SSPMVVKFAD 175 (175)
T ss_dssp SSCCEEEECC
T ss_pred CCCeEEEecC
Confidence 1149999983
No 163
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.71 E-value=5.6e-17 Score=130.79 Aligned_cols=82 Identities=22% Similarity=0.395 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCcHHHHH----HhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVS----HLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 154 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g 154 (184)
..++++|||+|||+++++++|+ ++|++||.|.+|++.+ .++++|||||+|.+.++|++|++.|||..+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC------CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 4668999999999999999977 8999999999999865 26789999999999999999999999999999
Q ss_pred CCCCCCceEEEeecCCC
Q 030012 155 KKPDSPTLKIQFAHFPF 171 (184)
Q Consensus 155 ~~~~~~~l~V~~a~~~~ 171 (184)
+. |+|+|++...
T Consensus 80 ~~-----l~v~~a~~~~ 91 (282)
T 3pgw_A 80 KP-----MRIQYAKTDS 91 (282)
T ss_pred cE-----EEEEEeccCc
Confidence 97 9999997644
No 164
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.71 E-value=4.6e-17 Score=121.61 Aligned_cols=81 Identities=25% Similarity=0.408 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
...++|||+|||.++++++|+++|++||.|.++++..+. ..++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--- 165 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS---ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK--- 165 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT---TTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE---
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE---
Confidence 447899999999999999999999999999999998853 23789999999999999999999999999999997
Q ss_pred CceEEEeec
Q 030012 160 PTLKIQFAH 168 (184)
Q Consensus 160 ~~l~V~~a~ 168 (184)
|+|+||.
T Consensus 166 --l~V~~As 172 (172)
T 2g4b_A 166 --LLVQRAS 172 (172)
T ss_dssp --CEEEECC
T ss_pred --EEEEeCC
Confidence 9999973
No 165
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.71 E-value=2.9e-17 Score=111.54 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=61.1
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC--CC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD--DK 155 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~--g~ 155 (184)
.....++|||+|||+++||++|+++|++||.|.+|+++. .++|||||+|.+.++|++ +++..+. ++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~--------~srGfaFV~F~~~~~A~~----~~~~~~~~~g~ 74 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK--------PFRAFAFVTFADDKVAQS----LCGEDLIIKGI 74 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS--------SCCSEEEEEESCHHHHHH----HTTCEEEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee--------CCCCEEEEEECCHHHHHH----HcCCCcccCCE
Confidence 346678999999999999999999999999999999875 257899999999999983 5666554 66
Q ss_pred CCCCCceEEEeecCC
Q 030012 156 KPDSPTLKIQFAHFP 170 (184)
Q Consensus 156 ~~~~~~l~V~~a~~~ 170 (184)
. |.|.+++..
T Consensus 75 ~-----v~v~~a~~k 84 (89)
T 3d2w_A 75 S-----VHISNAEPK 84 (89)
T ss_dssp E-----EEEEECC--
T ss_pred E-----EEEEEcCCC
Confidence 5 889988753
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=1.6e-16 Score=118.16 Aligned_cols=81 Identities=19% Similarity=0.340 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC--CC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD--KK 156 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g--~~ 156 (184)
....++|||+|||..+++++|+++|++||.|.++++..+. ..++++|||||+|.+.++|++|++.|||..+.| +.
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 162 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK---LTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQP 162 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSC
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcC---CCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeE
Confidence 3457899999999999999999999999999999998853 237889999999999999999999999999988 65
Q ss_pred CCCCceEEEee
Q 030012 157 PDSPTLKIQFA 167 (184)
Q Consensus 157 ~~~~~l~V~~a 167 (184)
|+|.||
T Consensus 163 -----l~V~~A 168 (168)
T 1b7f_A 163 -----LSVRLA 168 (168)
T ss_dssp -----CEEEEC
T ss_pred -----EEEEeC
Confidence 999986
No 167
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=6.4e-17 Score=123.25 Aligned_cols=84 Identities=14% Similarity=0.221 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
...++|||+|||+++++++|+++|++||.|.+|+++.+. .+++++|||||+|.+.++|++|++. +|..+.|+.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~--- 174 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR---GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHN--- 174 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEE---
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC---CCCCccceEEEEECCHHHHHHHHHh-CCcEECCEE---
Confidence 456899999999999999999999999999999998853 3378999999999999999999986 899999997
Q ss_pred CceEEEeecCCCC
Q 030012 160 PTLKIQFAHFPFH 172 (184)
Q Consensus 160 ~~l~V~~a~~~~~ 172 (184)
|.|.|+.....
T Consensus 175 --i~v~~a~~k~~ 185 (196)
T 1l3k_A 175 --CEVRKALSKQE 185 (196)
T ss_dssp --CEEEECC----
T ss_pred --EEEEecCChhH
Confidence 99999976443
No 168
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=4.8e-17 Score=123.98 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=74.8
Q ss_pred CCCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 78 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.....++|||+|||+++|+++|+++|+.||.|.+|+++.+ +.+++++|||||+|.+.++|++|++. ++..+.|+.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~- 83 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD---PNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRV- 83 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC---TTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEc---CCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEE-
Confidence 3456789999999999999999999999999999999884 33478999999999999999999975 999999997
Q ss_pred CCCceEEEeecCC
Q 030012 158 DSPTLKIQFAHFP 170 (184)
Q Consensus 158 ~~~~l~V~~a~~~ 170 (184)
|.|.++...
T Consensus 84 ----l~v~~~~~~ 92 (196)
T 1l3k_A 84 ----VEPKRAVSR 92 (196)
T ss_dssp ----CEEEECCC-
T ss_pred ----eeeecccCc
Confidence 999998653
No 169
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6e-17 Score=110.64 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=65.2
Q ss_pred CCCCE-EEEcCCCCCCcHHH----HHHhhcCC-CCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC
Q 030012 80 GESNL-LFVDGLPTDCTRRE----VSHLFRPF-VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD 153 (184)
Q Consensus 80 ~~~~~-lfVgnLp~~~te~~----L~~~F~~~-G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~ 153 (184)
.++.+ |||+|||+.+++++ |+++|++| |.|.+| . + |+|||+|.+.++|++|++.|||+.+.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---t-------g---G~AfV~F~~~esA~~A~~~l~G~~l~ 72 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---T-------G---CSAILRFINQDSAERAQKRMENEDVF 72 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---C-------T---TCEEEEESSHHHHHHHHHHHTTCCSS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---e-------c---CEEEEEECCHHHHHHHHHHhcCCccC
Confidence 34666 99999999999988 55899999 599987 1 2 79999999999999999999999999
Q ss_pred CCCCCCCceEEEeecCCC
Q 030012 154 DKKPDSPTLKIQFAHFPF 171 (184)
Q Consensus 154 g~~~~~~~l~V~~a~~~~ 171 (184)
|+. |+|+||+..+
T Consensus 73 gr~-----i~v~~A~~~s 85 (96)
T 2diu_A 73 GNR-----IIVSFTPKNR 85 (96)
T ss_dssp SSC-----CEEESSCCSC
T ss_pred Cce-----EEEEecCCCc
Confidence 997 9999998644
No 170
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.4e-17 Score=116.70 Aligned_cols=67 Identities=25% Similarity=0.364 Sum_probs=58.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHh
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL 147 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l 147 (184)
...++|||+|||+++++++|+++|++||.|. +.++.+...+..|+++|||||+|.+.++|++|++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4578999999999999999999999999999 777664332222688999999999999999999998
No 171
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.9e-17 Score=119.30 Aligned_cols=80 Identities=9% Similarity=0.135 Sum_probs=70.6
Q ss_pred CEEEEcCC----CCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECC----HHH----HHHHHH--Hhc
Q 030012 83 NLLFVDGL----PTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDD----PKC----ARTAMD--ALH 148 (184)
Q Consensus 83 ~~lfVgnL----p~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~----~~~----A~~Ai~--~l~ 148 (184)
.+|||+|| |+.+++++|+++|+.||+|.+|+++.+ +.+|+++|||||+|.+ .++ |.+|++ .|+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~D---p~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFND---PNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEEC---TTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEec---CCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 68999999 999999999999999999999999984 5568999999999996 333 788888 789
Q ss_pred CCeeCCCCCCCCceEEEeecCC
Q 030012 149 GYKFDDKKPDSPTLKIQFAHFP 170 (184)
Q Consensus 149 g~~~~g~~~~~~~l~V~~a~~~ 170 (184)
|..|+|+. |+|.+.++.
T Consensus 80 g~~I~Gr~-----irV~ln~~g 96 (136)
T 2j8a_A 80 GCFIMGFK-----FEVILNKHS 96 (136)
T ss_dssp CEEETTEE-----EEEEECCTT
T ss_pred CCeecCcE-----EEEEECccc
Confidence 99999998 999998764
No 172
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.69 E-value=2.7e-17 Score=110.36 Aligned_cols=72 Identities=24% Similarity=0.389 Sum_probs=65.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCC----C-------CEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhc
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPF----V-------GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH 148 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~ 148 (184)
...++|||+|||+++++++|+++|++| | .|.++++.. ++|||||+|.+.++|++|+ .||
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~---------~kg~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---------DKNFAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS---------SSSEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC---------CCcEEEEEcCCHHHHHHHH-hcC
Confidence 457899999999999999999999999 8 899998853 3679999999999999999 999
Q ss_pred CCeeCCCCCCCCceEEEe
Q 030012 149 GYKFDDKKPDSPTLKIQF 166 (184)
Q Consensus 149 g~~~~g~~~~~~~l~V~~ 166 (184)
|..+.|+. |+|+.
T Consensus 74 g~~~~g~~-----l~V~r 86 (87)
T 2hzc_A 74 GIIFQGQS-----LKIRR 86 (87)
T ss_dssp TCEETTEE-----CEEEC
T ss_pred CCEECCeE-----EEEeC
Confidence 99999997 88874
No 173
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2e-17 Score=111.62 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=64.4
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
..+++|||+|||+++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++++.. ...+.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~~~~~--~~~~~g~~--- 69 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--------FRAFAFVTFADDQIAQSLCGE--DLIIKGIS--- 69 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--------CCSCCEEECSCHHHHHHTTTC--EEEETTEE---
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--------CCCEEEEEECCHHHHHHHhcC--CceeCCEE---
Confidence 45789999999999999999999999999999998742 568999999999999754221 23447766
Q ss_pred CceEEEeecCCCCCC
Q 030012 160 PTLKIQFAHFPFHLP 174 (184)
Q Consensus 160 ~~l~V~~a~~~~~~~ 174 (184)
|+|.|++......
T Consensus 70 --l~v~~a~~~~~~~ 82 (88)
T 1wf0_A 70 --VHISNAEPKHNSN 82 (88)
T ss_dssp --EEEECCCCCCCCC
T ss_pred --EEEEecCCCCCCC
Confidence 9999987654433
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=2e-16 Score=117.11 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
...++|||+|||..+++++|+++|++||.|.++++..+. .+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--- 159 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ---VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT--- 159 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS---
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecC---CCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc---
Confidence 456899999999999999999999999999999998753 23788999999999999999999999999999973
Q ss_pred CceEEEee
Q 030012 160 PTLKIQFA 167 (184)
Q Consensus 160 ~~l~V~~a 167 (184)
.+|+|+||
T Consensus 160 ~~i~v~~A 167 (167)
T 1fxl_A 160 EPITVKFA 167 (167)
T ss_dssp SCCEEEEC
T ss_pred cceEEEeC
Confidence 35899886
No 175
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.69 E-value=1.8e-16 Score=118.37 Aligned_cols=88 Identities=23% Similarity=0.356 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
.+++|||+|||+++|+++|+++|++||.|.+|+++.+..... ++++|||||+|.+.++|++|++.|+|..+.+.. ..
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~--~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNP-PQSKGCCFVTFYTRKAALEAQNALHNMKVLPGM--HH 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSS-CEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTC--SS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC-CCcceEEEEEECCHHHHHHHHHHhcCcEEccCC--cc
Confidence 467999999999999999999999999999999988543210 278999999999999999999999998887443 34
Q ss_pred ceEEEeecCCC
Q 030012 161 TLKIQFAHFPF 171 (184)
Q Consensus 161 ~l~V~~a~~~~ 171 (184)
++.+.++....
T Consensus 79 ~~~~~~~~~~~ 89 (175)
T 3nmr_A 79 PIQMKPADSEK 89 (175)
T ss_dssp CCEEEECGGGC
T ss_pred ceEEccccccc
Confidence 58888886544
No 176
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=1.3e-16 Score=123.39 Aligned_cols=83 Identities=14% Similarity=0.280 Sum_probs=73.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
...++|||+|||.++|+++|+++|++||.|.+|+++.+. .+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~--- 99 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDS---VTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN--- 99 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC----CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC---
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecC---CCCccCceEEEEeCCHHHHHHHHHHccCCeeCCee---
Confidence 346899999999999999999999999999999998743 23788999999999999999999999999999998
Q ss_pred CceEEEeecCC
Q 030012 160 PTLKIQFAHFP 170 (184)
Q Consensus 160 ~~l~V~~a~~~ 170 (184)
|+|.++...
T Consensus 100 --l~v~~~~~~ 108 (216)
T 2qfj_A 100 --IKVGRPSNI 108 (216)
T ss_dssp --CEEECCSCC
T ss_pred --EEEecCCCc
Confidence 999988654
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=1.6e-15 Score=122.23 Aligned_cols=77 Identities=36% Similarity=0.673 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC-CCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD-DKKP 157 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~-g~~~ 157 (184)
...+++|||+|||.++++++|+++|++||.|.+|+++.+ + +|||||+|.+.++|++|++.|||..+. |+.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~---~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~- 274 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG---R-----HDIAFVEFDNEVQAGAARDALQGFKITQNNA- 274 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC---C-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCE-
Confidence 456789999999999999999999999999999999852 1 469999999999999999999999999 887
Q ss_pred CCCceEEEeec
Q 030012 158 DSPTLKIQFAH 168 (184)
Q Consensus 158 ~~~~l~V~~a~ 168 (184)
|+|+|++
T Consensus 275 ----l~v~~ak 281 (282)
T 3pgw_A 275 ----MKISFAK 281 (282)
T ss_pred ----EEEEEec
Confidence 9999996
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=5.4e-17 Score=120.71 Aligned_cols=80 Identities=18% Similarity=0.330 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
..++|||+|||.++++++|+++|++||.|.+++++.+. .+++++|||||+|.+.++|++|++ ++|..+.|+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~---- 157 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK---DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRK---- 157 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS---SSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSC----
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC---CCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeE----
Confidence 46799999999999999999999999999999998743 237899999999999999999998 8999999998
Q ss_pred ceEEEeecC
Q 030012 161 TLKIQFAHF 169 (184)
Q Consensus 161 ~l~V~~a~~ 169 (184)
|+|.|+.+
T Consensus 158 -i~V~~a~p 165 (167)
T 2cjk_A 158 -IEIKRAEP 165 (167)
T ss_dssp -EEEEECCC
T ss_pred -EEEeecCC
Confidence 99999964
No 179
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.68 E-value=1.2e-16 Score=127.10 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=70.2
Q ss_pred CCCCCCEEEEcCCCCCC---------cHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhc
Q 030012 78 KKGESNLLFVDGLPTDC---------TRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH 148 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~~---------te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~ 148 (184)
....+++|||+||+..+ +|++|+++|++||.|.+|+++. ++|||||+|.+.++|+.|++.|+
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---------~kG~AFV~F~~~~~Ae~A~~am~ 200 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---------SKNCGFVKFKYQANAEFAKEAMS 200 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHHHT
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---------CCCEEEEEeCCHHHHHHHHHHhC
Confidence 34568899999999998 7999999999999999999974 36799999999999999999999
Q ss_pred CCee------------CCCCCCCCceEEEeecCCC
Q 030012 149 GYKF------------DDKKPDSPTLKIQFAHFPF 171 (184)
Q Consensus 149 g~~~------------~g~~~~~~~l~V~~a~~~~ 171 (184)
|..+ .|+. |.|.||+...
T Consensus 201 g~~l~~~~~~e~~~~~~gr~-----L~V~wA~~~p 230 (240)
T 3u1l_A 201 NQTLLLPSDKEWDDRREGTG-----LLVKWANEDP 230 (240)
T ss_dssp TCCCCCTTSTTGGGGGGSCC-----CEEEECC---
T ss_pred CCEEeccccccccccCCCCE-----EEEEEccCCC
Confidence 9999 7776 9999998643
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=5.1e-16 Score=108.72 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCC-----CCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Q 030012 80 GESNLLFVDGLPT-----DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 154 (184)
Q Consensus 80 ~~~~~lfVgnLp~-----~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g 154 (184)
.++++|+|.||.. +-++++|++.|++||.|.+|+++.+.. .+++++||+||+|.+.++|++|++.|||..+.|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~--~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPG--APDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSS--CCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCC--CCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4578999999963 237899999999999999999987531 235789999999999999999999999999999
Q ss_pred CCCCCCceEEEeecC
Q 030012 155 KKPDSPTLKIQFAHF 169 (184)
Q Consensus 155 ~~~~~~~l~V~~a~~ 169 (184)
+. |+|.|+..
T Consensus 84 r~-----i~v~~a~~ 93 (105)
T 2pe8_A 84 RV-----VKACFYNL 93 (105)
T ss_dssp EE-----CEEEECCH
T ss_pred cE-----EEEEEcCH
Confidence 97 99999964
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=3.6e-16 Score=120.63 Aligned_cols=80 Identities=20% Similarity=0.288 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
..++|||+|||+++++++|+++|++||.|.+|++..+.. ++++|||||+|++.++|++|++.+ +..+.|+.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~----~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~---- 178 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVETP-GQKYKETD---- 178 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT----CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEE----
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC----CCcccEEEEEECCHHHHHHHHHhC-CCeECCEE----
Confidence 358999999999999999999999999999999988532 789999999999999999999765 45999997
Q ss_pred ceEEEeecCC
Q 030012 161 TLKIQFAHFP 170 (184)
Q Consensus 161 ~l~V~~a~~~ 170 (184)
|.|.|++..
T Consensus 179 -l~V~~~~~y 187 (193)
T 2voo_A 179 -LLILFKDDY 187 (193)
T ss_dssp -CEEEETTTC
T ss_pred -EEEEEhHHH
Confidence 999998754
No 182
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=5e-16 Score=122.23 Aligned_cols=79 Identities=20% Similarity=0.355 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCC-CCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 79 KGESNLLFVDGLPT-DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 79 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
..++++|||+|||+ ++++++|+++|++||.|.+|+++.+. +|||||+|.+.++|++|++.|||..+.|+.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--------~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~- 101 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------KENALVQMADGNQAQLAMSHLNGHKLHGKP- 101 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--------SCCEEEEESCHHHHHHHHHHHTTCBCSSSB-
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--------CCEEEEEECCHHHHHHHHHHhCCCeECCeE-
Confidence 45689999999999 99999999999999999999998632 579999999999999999999999999997
Q ss_pred CCCceEEEeecCC
Q 030012 158 DSPTLKIQFAHFP 170 (184)
Q Consensus 158 ~~~~l~V~~a~~~ 170 (184)
|+|.|++..
T Consensus 102 ----l~v~~a~~~ 110 (229)
T 2adc_A 102 ----IRITLSKHQ 110 (229)
T ss_dssp ----CEEECCSCC
T ss_pred ----EEEEEecCc
Confidence 999999754
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=4.4e-16 Score=116.84 Aligned_cols=78 Identities=14% Similarity=0.312 Sum_probs=69.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||..+++++|+++|++||.|..+ .. .++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 165 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQ----DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS-- 165 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CS----SSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE--
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cC----CCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE--
Confidence 3456899999999999999999999999987766 21 2678999999999999999999999999999997
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
|+|+|++.
T Consensus 166 ---i~v~~a~~ 173 (175)
T 1fje_B 166 ---VSLYYTGE 173 (175)
T ss_dssp ---EEEEECSS
T ss_pred ---EEEEecCC
Confidence 99999964
No 184
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=3.7e-16 Score=116.10 Aligned_cols=79 Identities=19% Similarity=0.326 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 160 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~ 160 (184)
++++|||+|||+++|+++|+++|++||.|.+|+++.+ +.+++++|||||+|.+.++|++|++ ++..+.|+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~---- 72 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKD---PATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKV---- 72 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCC---TTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEE----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEC---CCCCCccceEEEEEccHHHHHHHHh--cccccCCeE----
Confidence 4689999999999999999999999999999999874 3347899999999999999999998 467888886
Q ss_pred ceEEEeecC
Q 030012 161 TLKIQFAHF 169 (184)
Q Consensus 161 ~l~V~~a~~ 169 (184)
|.|.++..
T Consensus 73 -i~v~~~~~ 80 (167)
T 2cjk_A 73 -IDPKRAIP 80 (167)
T ss_dssp -CCCEECCC
T ss_pred -cccccccc
Confidence 88888753
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=1.4e-15 Score=122.62 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCC-cHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 79 KGESNLLFVDGLPTDC-TRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~-te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
....++|||+|||+.+ ++++|+++|+.||.|.++++..+.. |+++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~- 255 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD----GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSH- 255 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS----CCEEEEEEEECSSHHHHHHHHHHHTTCEETTEE-
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC----CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeE-
Confidence 4567899999999995 9999999999999999999988543 789999999999999999999999999999997
Q ss_pred CCCceEEEeecCCCC
Q 030012 158 DSPTLKIQFAHFPFH 172 (184)
Q Consensus 158 ~~~~l~V~~a~~~~~ 172 (184)
|+|.|++....
T Consensus 256 ----l~v~~a~~~~~ 266 (284)
T 3smz_A 256 ----LRVSFCAPGPP 266 (284)
T ss_dssp ----CEEEECCSSSC
T ss_pred ----EEEEEecCCCc
Confidence 99999976443
No 186
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=6.7e-16 Score=120.11 Aligned_cols=82 Identities=13% Similarity=0.204 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCE--EEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGY--REIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i--~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
.++++|||+|||+++|+++|+++|++||.| .+++++.+. +.++|||||+|.+.++|.+|+..|||+++.++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-----~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~- 194 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-----SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN- 194 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-----SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS-
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-----CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC-
Confidence 457899999999999999999999999999 899887642 345699999999999999999999999999974
Q ss_pred CCCceEEEee
Q 030012 158 DSPTLKIQFA 167 (184)
Q Consensus 158 ~~~~l~V~~a 167 (184)
.+.|+.|.|+
T Consensus 195 ~~~p~~vk~~ 204 (205)
T 3tyt_A 195 GPYPYTLKLC 204 (205)
T ss_dssp SSSCEECEEE
T ss_pred CCcceEEEec
Confidence 3557888775
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.62 E-value=2e-15 Score=121.76 Aligned_cols=85 Identities=21% Similarity=0.294 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
...++|||+|||+++++++|+++|+.||.|.+++++.+. .+++++|||||+|.+.++|++|++.|+|..+.|+.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~--- 166 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSE---RTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRT--- 166 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE---
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeC---CCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE---
Confidence 346799999999999999999999999999999998743 33789999999999999999999999999999997
Q ss_pred CceEEEeecCCCC
Q 030012 160 PTLKIQFAHFPFH 172 (184)
Q Consensus 160 ~~l~V~~a~~~~~ 172 (184)
|+|.|+.....
T Consensus 167 --i~v~~a~~~~~ 177 (284)
T 3smz_A 167 --LYVHWTDAGQL 177 (284)
T ss_dssp --CEEEECCGGGC
T ss_pred --EEEEECCCCCC
Confidence 99999976443
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.62 E-value=2e-15 Score=118.71 Aligned_cols=78 Identities=15% Similarity=0.297 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCC-CEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC-CCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFV-GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD-DKKP 157 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~-g~~~ 157 (184)
.++++|||+|||.++++++|+++|++|| .|.+++++.+ ++|||||+|.+.++|++|++.|||..+. |+.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~- 219 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--------DRKMALIQMGSVEEAVQALIDLHNHDLGENHH- 219 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--------STTCEEEEESSHHHHHHHHHHHTTCBSSSSCB-
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--------CCcEEEEEECCHHHHHHHHHHHCCCccCCCCe-
Confidence 4578999999999999999999999999 9999998642 3579999999999999999999999999 886
Q ss_pred CCCceEEEeecCC
Q 030012 158 DSPTLKIQFAHFP 170 (184)
Q Consensus 158 ~~~~l~V~~a~~~ 170 (184)
|+|.|++.+
T Consensus 220 ----l~v~~a~~~ 228 (229)
T 2adc_A 220 ----LRVSFSKST 228 (229)
T ss_dssp ----CEEEECSSC
T ss_pred ----EEEEEecCC
Confidence 999999763
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=116.61 Aligned_cols=78 Identities=15% Similarity=0.297 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCC-CEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC-CCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFV-GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD-DKKP 157 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~-g~~~ 157 (184)
.++++|||+|||..+++++|+++|++|| .|.+++++.+ .+|||||+|.+.++|++|++.|||..+. |+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~- 188 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--------DRKMALIQMGSVEEAVQALIDLHNHDLGENHH- 188 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--------TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCS-
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--------CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCe-
Confidence 4578999999999999999999999999 9999998652 2579999999999999999999999999 887
Q ss_pred CCCceEEEeecCC
Q 030012 158 DSPTLKIQFAHFP 170 (184)
Q Consensus 158 ~~~~l~V~~a~~~ 170 (184)
|+|.|++.+
T Consensus 189 ----l~v~~a~~~ 197 (198)
T 1qm9_A 189 ----LRVSFSKST 197 (198)
T ss_dssp ----CCEEEECCC
T ss_pred ----EEEEeeccc
Confidence 999999764
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.60 E-value=1e-15 Score=117.17 Aligned_cols=77 Identities=21% Similarity=0.367 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCC-CCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 81 ESNLLFVDGLPT-DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 81 ~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
.+++|||+|||+ ++++++|+++|++||.|.+|+++.+. +|||||+|.+.++|++|++.|||..+.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--------~g~afV~f~~~~~a~~A~~~l~~~~~~g~~--- 70 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--------KENALVQMADGNQAQLAMSHLNGHKLHGKP--- 70 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--------SSCCEEECTTTHHHHHHHHHHTTCCCSSCC---
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCeecCeE---
Confidence 368999999999 99999999999999999999987631 579999999999999999999999999997
Q ss_pred CceEEEeecCC
Q 030012 160 PTLKIQFAHFP 170 (184)
Q Consensus 160 ~~l~V~~a~~~ 170 (184)
|+|.|++..
T Consensus 71 --l~v~~a~~~ 79 (198)
T 1qm9_A 71 --IRITLSKHQ 79 (198)
T ss_dssp --CEEEECCCC
T ss_pred --EEEEEecCC
Confidence 999999754
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.4e-15 Score=103.51 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=67.5
Q ss_pred CCCCCEEEEcCCCCCC-----------cHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHh
Q 030012 79 KGESNLLFVDGLPTDC-----------TRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL 147 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~-----------te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l 147 (184)
..++++|+|.||.... ++++|+++|++||.|.+|.| .+ ..++|||||+|.+.++|++|++.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~------~~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FD------RHPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ET------TCTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ec------CCCCEEEEEEECCHHHHHHHHHHc
Confidence 3567899999995433 26899999999999999966 32 136889999999999999999999
Q ss_pred cCCeeCCCCCCCCceEEEeecC
Q 030012 148 HGYKFDDKKPDSPTLKIQFAHF 169 (184)
Q Consensus 148 ~g~~~~g~~~~~~~l~V~~a~~ 169 (184)
||..+.|+. |+|+|+..
T Consensus 85 ng~~~~gr~-----l~v~~a~~ 101 (112)
T 2dit_A 85 DGRWFGGRQ-----ITAQAWDG 101 (112)
T ss_dssp TTCEETTEE-----CEEEECCS
T ss_pred CCCEECCcE-----EEEEEeCC
Confidence 999999997 99999865
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.59 E-value=3.1e-15 Score=119.89 Aligned_cols=77 Identities=26% Similarity=0.393 Sum_probs=70.4
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++|+++|+++|++||.|.+|++.+ ++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~-- 87 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---------DRGFGFIRLESRTLAEIAKAELDGTILKSRP-- 87 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---------CCcEEEEEECCHHHHHHHHHHcCCcEECCce--
Confidence 35567999999999999999999999999999999853 3679999999999999999999999999987
Q ss_pred CCceEEEeecC
Q 030012 159 SPTLKIQFAHF 169 (184)
Q Consensus 159 ~~~l~V~~a~~ 169 (184)
|+|.|+..
T Consensus 88 ---l~v~~a~~ 95 (261)
T 3sde_A 88 ---LRIRFATH 95 (261)
T ss_dssp ---CEEEECCC
T ss_pred ---eEeeeccc
Confidence 99999864
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.58 E-value=2.9e-15 Score=121.28 Aligned_cols=83 Identities=13% Similarity=0.238 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCC-CcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 79 KGESNLLFVDGLPTD-CTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
....++|||+|||+. +++++|+++|++||.|.+|+++.+.. .+++++|||||+|.+.++|++|+ .|||..+.|+.
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~--~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~- 282 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK--EHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNRE- 282 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-----CCCEEEEEEESSHHHHHHHG-GGTTEEETTEE-
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCC--cCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcE-
Confidence 456789999999999 99999999999999999999987432 12678999999999999999999 99999999997
Q ss_pred CCCceEEEeecC
Q 030012 158 DSPTLKIQFAHF 169 (184)
Q Consensus 158 ~~~~l~V~~a~~ 169 (184)
|+|.|++.
T Consensus 283 ----i~V~~a~~ 290 (292)
T 2ghp_A 283 ----ISVSLADK 290 (292)
T ss_dssp ----EEEEECCC
T ss_pred ----EEEEEecC
Confidence 99999975
No 194
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.57 E-value=3.1e-15 Score=111.62 Aligned_cols=76 Identities=22% Similarity=0.324 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCC----C-------CEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPF----V-------GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG 149 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g 149 (184)
+.++|||+|||+++|+++|+++|++| | .|.++++. +++|||||+|.+.++|++|+ .|||
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---------~~~g~afV~f~~~~~A~~A~-~~~~ 72 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFDG 72 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---------TTTTEEEEEESSHHHHHHHG-GGTT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---------CCCCEEEEEeCCHHHHHHHH-HhCC
Confidence 46899999999999999999999999 6 77777763 34689999999999999999 8999
Q ss_pred CeeCCCCCCCCceEEEeecCCC
Q 030012 150 YKFDDKKPDSPTLKIQFAHFPF 171 (184)
Q Consensus 150 ~~~~g~~~~~~~l~V~~a~~~~ 171 (184)
..+.|+. |+|.+++...
T Consensus 73 ~~~~g~~-----i~v~~~~~~~ 89 (172)
T 2g4b_A 73 IIFQGQS-----LKIRRPHDYQ 89 (172)
T ss_dssp CEETTEE-----CEEECCSSCC
T ss_pred cEecCce-----eeecCCcccC
Confidence 9999997 9999987543
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=4.1e-16 Score=116.96 Aligned_cols=83 Identities=14% Similarity=0.205 Sum_probs=69.7
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 158 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~ 158 (184)
....++|||+|||+++++++|+++|+.||.+..+.+... ..++++|||||+|.+.++|++|+ .|||..+.|+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~----~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~-- 82 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDV----RTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNE-- 82 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEE----EEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEE--
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEEC----CCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeE--
Confidence 466789999999999999999999999987665322221 12678899999999999999999 59999999997
Q ss_pred CCceEEEeecCCC
Q 030012 159 SPTLKIQFAHFPF 171 (184)
Q Consensus 159 ~~~l~V~~a~~~~ 171 (184)
|+|.|+....
T Consensus 83 ---l~v~~~~~~~ 92 (175)
T 1fje_B 83 ---IKLEKPKGRD 92 (175)
T ss_dssp ---EEEECCCCSS
T ss_pred ---EEEecCCCcc
Confidence 9999997643
No 196
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.57 E-value=8.8e-15 Score=122.01 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=68.3
Q ss_pred CCCCCCEEEEcC--CCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 78 KKGESNLLFVDG--LPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 78 ~~~~~~~lfVgn--Lp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
...++++|||+| |+..+||++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||.++.+.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---------NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---------TCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 457789999999 689999999999999999999987642 368999999999999999999999999644
Q ss_pred CCCCCceEEEeec
Q 030012 156 KPDSPTLKIQFAH 168 (184)
Q Consensus 156 ~~~~~~l~V~~a~ 168 (184)
.+.+.+|.|.|+.
T Consensus 85 ~g~~~~ly~~~~~ 97 (345)
T 3tht_A 85 LGQKITLYLNFVE 97 (345)
T ss_dssp TSCEEECEEEECS
T ss_pred cCCceEEEEEEee
Confidence 2223357888874
No 197
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.56 E-value=4e-15 Score=113.39 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=66.1
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCC----C-------CEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPF----V-------GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG 149 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g 149 (184)
.+++|||+|||+++++++|+++|++| | .|.++++ ++++|||||+|.+.++|++|+ .|||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~---------~~~~g~afV~F~~~~~A~~Al-~l~g 72 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---------NQDKNFAFLEFRSVDETTQAM-AFDG 72 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE---------ETTTTEEEEEESCSHHHHHHG-GGTT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe---------cCCCCEEEEEeCCHHHHHHHH-HhcC
Confidence 46899999999999999999999999 5 6666665 345789999999999999999 8999
Q ss_pred CeeCCCCCCCCceEEEeecCC
Q 030012 150 YKFDDKKPDSPTLKIQFAHFP 170 (184)
Q Consensus 150 ~~~~g~~~~~~~l~V~~a~~~ 170 (184)
..+.|+. |+|.|++..
T Consensus 73 ~~~~g~~-----i~v~~~~~~ 88 (198)
T 2yh0_A 73 IIFQGQS-----LKIRRPHDY 88 (198)
T ss_dssp EEETTEE-----EEEECCCCC
T ss_pred CEEcCce-----EEEeCCCCC
Confidence 9999997 999998754
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=2.8e-14 Score=114.31 Aligned_cols=80 Identities=20% Similarity=0.197 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhc-CCeeC---CCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH-GYKFD---DKK 156 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~-g~~~~---g~~ 156 (184)
.+++|||+|||..+|+++|+++|+.||.|.+|+++.+++ |+++|||||+|.+.++|.+|++.|| +..+. ++.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~ 170 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR----GRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRP 170 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT----SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCB
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC----CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCce
Confidence 467999999999999999999999999999999998643 7899999999999999999999995 45544 554
Q ss_pred CCCCceEEEeecC
Q 030012 157 PDSPTLKIQFAHF 169 (184)
Q Consensus 157 ~~~~~l~V~~a~~ 169 (184)
|.|.++..
T Consensus 171 -----i~v~~~~~ 178 (261)
T 3sde_A 171 -----VIVEPMEQ 178 (261)
T ss_dssp -----CEEEECCC
T ss_pred -----EEEeeccc
Confidence 99999875
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=2.1e-15 Score=105.39 Aligned_cols=72 Identities=18% Similarity=0.294 Sum_probs=63.3
Q ss_pred EcCCCCCCcHHHHHHhh------------cCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Q 030012 87 VDGLPTDCTRREVSHLF------------RPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 154 (184)
Q Consensus 87 VgnLp~~~te~~L~~~F------------~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g 154 (184)
+.+|++.+++++|++.| ++||.|.+|++..+.. ++++|||||+|.+.++|++|++.|||..+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~----~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG----DHLVGNVYVKFRREEDAEKAVIDLNNRWFNG 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS----SSSEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC----CCccEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56788888888887766 9999999999987432 6889999999999999999999999999999
Q ss_pred CCCCCCceEEEee
Q 030012 155 KKPDSPTLKIQFA 167 (184)
Q Consensus 155 ~~~~~~~l~V~~a 167 (184)
+. |+|+|+
T Consensus 96 r~-----i~v~~s 103 (104)
T 1jmt_A 96 QP-----IHAELS 103 (104)
T ss_dssp EE-----CCEEEC
T ss_pred EE-----EEEEEc
Confidence 97 999986
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.54 E-value=8.9e-15 Score=118.40 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCC-CEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCC
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFV-GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 159 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~ 159 (184)
..++|||+|||+++++++|+++|+.|| .|.+|+++.+.. ++++|||||+|.+.++|++|++.|+|..+.|+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--- 188 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF----NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYT--- 188 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETTEE---
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC----CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE---
Confidence 578999999999999999999999999 999999987533 578899999999999999999999999999987
Q ss_pred CceEEEeecCCC
Q 030012 160 PTLKIQFAHFPF 171 (184)
Q Consensus 160 ~~l~V~~a~~~~ 171 (184)
|+|.|+....
T Consensus 189 --l~v~~a~~~~ 198 (292)
T 2ghp_A 189 --LVTKVSNPLE 198 (292)
T ss_dssp --CEEEECCCC-
T ss_pred --EEEEECCCCc
Confidence 9999997544
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-13 Score=95.88 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=57.6
Q ss_pred CCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceEEEeecCCC
Q 030012 92 TDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAHFPF 171 (184)
Q Consensus 92 ~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~V~~a~~~~ 171 (184)
..+++++|+++|++||.|.+|+|+ ++++|||||+|++.++|+.|++.+++ +.++. |+|+|++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~--------~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~-----l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS--------SKKPGTAVVEFATVKAAELAVQNEVG--LVDNP-----LKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE--------SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSB-----CEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc--------cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCe-----EEEEEccCCC
Confidence 568999999999999999999987 25678999999999999999998555 55765 9999998765
Q ss_pred CCC
Q 030012 172 HLP 174 (184)
Q Consensus 172 ~~~ 174 (184)
...
T Consensus 92 ~~~ 94 (100)
T 2d9o_A 92 QDA 94 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 433
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.53 E-value=2.4e-14 Score=100.08 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=68.3
Q ss_pred CCCEEEEcCC--CCCC--------cHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Q 030012 81 ESNLLFVDGL--PTDC--------TRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY 150 (184)
Q Consensus 81 ~~~~lfVgnL--p~~~--------te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~ 150 (184)
+++.|.+.|+ +.++ .++||++.|++||.|.+|+|.++.... .++++||+||+|.+.++|++|++.|||.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~-~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGV-EVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTB-CCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCC-CcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 5688999998 3333 347899999999999999998753221 1367899999999999999999999999
Q ss_pred eeCCCCCCCCceEEEeec
Q 030012 151 KFDDKKPDSPTLKIQFAH 168 (184)
Q Consensus 151 ~~~g~~~~~~~l~V~~a~ 168 (184)
.+.|+. |+|.|+.
T Consensus 83 ~f~GR~-----i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRV-----VVTKYCD 95 (105)
T ss_dssp EETTEE-----CEEEEEC
T ss_pred EeCCCE-----EEEEEeC
Confidence 999997 9999985
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.51 E-value=8.5e-14 Score=99.35 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCC--C---CcHHHHHHhhcCCCCEEEEEEeecCCC-CCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Q 030012 81 ESNLLFVDGLPT--D---CTRREVSHLFRPFVGYREIRVIHKEPR-RTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 154 (184)
Q Consensus 81 ~~~~lfVgnLp~--~---~te~~L~~~F~~~G~i~~v~l~~~~~~-~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g 154 (184)
++++|++.|+-. + --++||++.|++||.|.+|+|+.+... ...++++||+||+|.+.++|++|++.|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999842 2 246899999999999999999885421 1125788999999999999999999999999999
Q ss_pred CCCCCCceEEEeecC
Q 030012 155 KKPDSPTLKIQFAHF 169 (184)
Q Consensus 155 ~~~~~~~l~V~~a~~ 169 (184)
+. |+|.|+..
T Consensus 99 R~-----i~v~~~~~ 108 (118)
T 3ue2_A 99 RK-----VVAEVYDQ 108 (118)
T ss_dssp EE-----CEEEEECH
T ss_pred cE-----EEEEEcCh
Confidence 97 99999853
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=2e-12 Score=91.65 Aligned_cols=77 Identities=18% Similarity=0.159 Sum_probs=64.1
Q ss_pred CCCCEEEEcCCCCC----------CcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcC
Q 030012 80 GESNLLFVDGLPTD----------CTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG 149 (184)
Q Consensus 80 ~~~~~lfVgnLp~~----------~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g 149 (184)
.+++.|.+.|+=.. --++||++.|++||.|.+|.+.++ .++||+||+|.+.++|++|++.|||
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-------~~~G~~fV~f~~~e~A~~Ai~~lnG 77 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-------SAQGNVYVKCPSIAAAIAAVNALHG 77 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-------CTTCCEEEECSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-------CCcEEEEEEECCHHHHHHHHHHhCC
Confidence 45678888887321 123588999999999999988542 2478999999999999999999999
Q ss_pred CeeCCCCCCCCceEEEeec
Q 030012 150 YKFDDKKPDSPTLKIQFAH 168 (184)
Q Consensus 150 ~~~~g~~~~~~~l~V~~a~ 168 (184)
..+.|+. |+|+|+.
T Consensus 78 ~~f~GR~-----i~v~~~~ 91 (114)
T 3s6e_A 78 RWFAGKM-----ITAAYVP 91 (114)
T ss_dssp CEETTEE-----CEEEEEC
T ss_pred CEECCEE-----EEEEEEc
Confidence 9999998 9999985
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=2e-11 Score=87.21 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=65.9
Q ss_pred CCCCCCEEEEcCCCCC-CcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECC-HHHHHHHHHHhc--CCeeC
Q 030012 78 KKGESNLLFVDGLPTD-CTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDD-PKCARTAMDALH--GYKFD 153 (184)
Q Consensus 78 ~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~-~~~A~~Ai~~l~--g~~~~ 153 (184)
.-..+..|||+||+.. +++++|+++|++||.|.+|.++.+.. .|||+|.+ .++|..|++.|+ +.+|.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---------tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---------EGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---------EEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---------EEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 3567899999999999 99999999999999999999976422 69999999 899999999994 78888
Q ss_pred CCCCCCCceEEEee
Q 030012 154 DKKPDSPTLKIQFA 167 (184)
Q Consensus 154 g~~~~~~~l~V~~a 167 (184)
+.. ++++.-
T Consensus 85 g~~-----~~~evL 93 (121)
T 1owx_A 85 NKE-----VTWEVL 93 (121)
T ss_dssp SSS-----EEEEEC
T ss_pred CcE-----EEEEEC
Confidence 876 777654
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=2.4e-11 Score=82.10 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=61.3
Q ss_pred CCCCEEEEcCCCC----CCcH----HHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCe
Q 030012 80 GESNLLFVDGLPT----DCTR----REVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYK 151 (184)
Q Consensus 80 ~~~~~lfVgnLp~----~~te----~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~ 151 (184)
++..||+|.-++. +.-. .+|.+.|.+||.|..++++.+ .+||+|.+.++|.+|++ |||++
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----------~~fVtF~d~~sAlaAi~-mnG~~ 72 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----------KMWVTFLEGSSALNVLS-LNGKE 72 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----------SEEEEESSHHHHHHGGG-GTTCE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----------CEEEEECChHHHHHHHh-cCCeE
Confidence 4467888877662 2323 579999999999999999863 48999999999999998 99999
Q ss_pred eCCCCCCCCceEEEeecC
Q 030012 152 FDDKKPDSPTLKIQFAHF 169 (184)
Q Consensus 152 ~~g~~~~~~~l~V~~a~~ 169 (184)
+.|++ |+|++++.
T Consensus 73 v~Gr~-----LkV~lkt~ 85 (91)
T 2dnr_A 73 LLNRT-----ITIALKSP 85 (91)
T ss_dssp ETTEE-----EEEEECCC
T ss_pred eCCeE-----EEEEeCCC
Confidence 99998 99999875
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.04 E-value=9e-10 Score=85.84 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=61.5
Q ss_pred CCcHHHHHHhhcCCCCEEEEEEeecC-CCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCceEEEeec
Q 030012 93 DCTRREVSHLFRPFVGYREIRVIHKE-PRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAH 168 (184)
Q Consensus 93 ~~te~~L~~~F~~~G~i~~v~l~~~~-~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l~V~~a~ 168 (184)
+-.+++|++.|++||.|.++.+..+. ..+..++++|++||+|.+.++|++|++.|||..+.||. |++.|..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~-----i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK-----VVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB-----CEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE-----EEEEEcC
Confidence 34668899999999999999997643 23344689999999999999999999999999999997 9999975
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=7.8e-10 Score=75.12 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=61.0
Q ss_pred CCCCCEEEEcCCCCC------CcH---HHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcC
Q 030012 79 KGESNLLFVDGLPTD------CTR---REVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG 149 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~------~te---~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g 149 (184)
-++..||+|.-++.. ..+ .+|.+.|.+||+|..++++.+ -+||+|.+.++|.+||+ |||
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----------~~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----------QMLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----------EEEEECSCSHHHHHHHH-GGG
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----------cEEEEEcChHHHHHHHh-cCC
Confidence 355689999888643 222 468999999999999999863 38999999999999998 999
Q ss_pred CeeCCCCCCCCceEEEeec
Q 030012 150 YKFDDKKPDSPTLKIQFAH 168 (184)
Q Consensus 150 ~~~~g~~~~~~~l~V~~a~ 168 (184)
+++.|+. |+|++-.
T Consensus 80 ~~v~Gr~-----L~V~~k~ 93 (95)
T 1ufw_A 80 MKVKGRA-----VKISGPS 93 (95)
T ss_dssp SEETTEE-----EEEECCC
T ss_pred eeeCCeE-----EEEeccC
Confidence 9999998 9998753
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=7.2e-07 Score=61.94 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=64.8
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCC-----CCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPF-----VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD 153 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~-----G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~ 153 (184)
.+..++|-+=|||..+++..|+.+.+.+ |.++.+.+..+ . +-|+|+|.|...|-+|.-+|+|.+|.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H------~GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---F------NGAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---T------TEEEEECSCHHHHHHHHHHHSSEEET
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---C------CceEEEEccchhhHHHHhhcCCeeec
Confidence 4557889999999999999999999999 99999988753 1 26999999999999999999999999
Q ss_pred CCCCCCCceEEE
Q 030012 154 DKKPDSPTLKIQ 165 (184)
Q Consensus 154 g~~~~~~~l~V~ 165 (184)
|++ |++.
T Consensus 89 gr~-----Lr~g 95 (117)
T 2l9w_A 89 GKV-----IRSG 95 (117)
T ss_dssp TEE-----EEEE
T ss_pred CeE-----EEec
Confidence 997 8875
No 210
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.00 E-value=6.6e-05 Score=50.57 Aligned_cols=86 Identities=16% Similarity=0.291 Sum_probs=67.6
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCce
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 162 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~l 162 (184)
.+|-|.+||+.+||+++.+.+.....+.....+..+... ....-.-|+|.|.+.+++..-.+.++|+.+.+.++...+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~-~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSL-YPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSS-TTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCC-CCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 478899999999999999999998877666655422111 1233457999999999999999999999999988666666
Q ss_pred EEEeecC
Q 030012 163 KIQFAHF 169 (184)
Q Consensus 163 ~V~~a~~ 169 (184)
.|+||-.
T Consensus 81 ~VE~AP~ 87 (91)
T 1uw4_A 81 IVEFAPF 87 (91)
T ss_dssp EEEECSS
T ss_pred EEEEcCC
Confidence 7888743
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=3.2e-05 Score=53.16 Aligned_cols=75 Identities=24% Similarity=0.270 Sum_probs=62.5
Q ss_pred CCCEEEEcCCCCCC-c----HHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 81 ESNLLFVDGLPTDC-T----RREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 81 ~~~~lfVgnLp~~~-t----e~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
-.++|+|.||+.++ . .+.++++|..|+.+......+.- .-..|.|.+.++|.+|-..||+..+.|.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF---------RRirv~F~~~~~A~~AR~~Lh~~~f~g~ 74 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF---------KRVRINFSNPLSAADARLRLHKTEFLGK 74 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT---------TEEEEECSSTTHHHHHHHTSTTSEETTE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc---------eEEEEEeCChHHHHHHHHHhccceecCc
Confidence 45789999998765 2 25679999999999887776531 1468999999999999999999999999
Q ss_pred CCCCCceEEEeecC
Q 030012 156 KPDSPTLKIQFAHF 169 (184)
Q Consensus 156 ~~~~~~l~V~~a~~ 169 (184)
+ |+|-|+..
T Consensus 75 ~-----~r~YFgq~ 83 (104)
T 1wey_A 75 E-----MKLYFAQT 83 (104)
T ss_dssp E-----CEEECCCC
T ss_pred e-----eEEEecCC
Confidence 8 99999973
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.67 E-value=0.00031 Score=47.66 Aligned_cols=58 Identities=21% Similarity=0.397 Sum_probs=48.3
Q ss_pred CCCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhc
Q 030012 79 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH 148 (184)
Q Consensus 79 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~ 148 (184)
....+.++| +.|.++...||.++|+.||. ..|+++.+ . .|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD---T-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD---T-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET---T-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC---C-------eEEEEecCHHHHHHHHHhcc
Confidence 345567778 99999999999999999995 45777763 1 79999999999999998763
No 213
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.45 E-value=0.00045 Score=46.89 Aligned_cols=87 Identities=20% Similarity=0.321 Sum_probs=63.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCCCCCc
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 161 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~~~~~ 161 (184)
+-+|-|..||+.+||+++.+.+...-++.....+.-+.. .....-.-|+|.|.+.++...-.+.++|+.+.+.++...+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s-~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLS-LYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSS-SCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 468999999999999999988877644322222211100 0111224689999999999999999999999999877777
Q ss_pred eEEEeecC
Q 030012 162 LKIQFAHF 169 (184)
Q Consensus 162 l~V~~a~~ 169 (184)
-.|+||-.
T Consensus 88 a~VE~APy 95 (97)
T 2l08_A 88 AVVEFAPF 95 (97)
T ss_dssp EEEEECCC
T ss_pred eEEEecCC
Confidence 78888843
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.002 Score=44.12 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=53.5
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcC----C-CCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRP----F-VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 154 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~----~-G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g 154 (184)
...++|.|.|||..+.++.|+-+|+. . |.|.+++... +-|+|+|.+.+.|++.++. .-+.+.+
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----------~~AvItF~d~~va~rVL~k-~~H~L~~ 73 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----------CGGVLTFREPADAERVLAQ-ADHELHG 73 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----------TEEEEEESSHHHHHHHHTC-SCCBSSS
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----------CcEEEEEcChHHHHHHhcC-CcceecC
Confidence 34679999999999999999999986 2 6777776642 2789999999999998753 2466666
Q ss_pred CCCCCCceEEE
Q 030012 155 KKPDSPTLKIQ 165 (184)
Q Consensus 155 ~~~~~~~l~V~ 165 (184)
.. |.|.
T Consensus 74 ~~-----LsV~ 79 (104)
T 2dhx_A 74 AQ-----LSLR 79 (104)
T ss_dssp SB-----CEEE
T ss_pred eE-----EEEE
Confidence 54 7763
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.25 E-value=0.00051 Score=46.70 Aligned_cols=55 Identities=22% Similarity=0.422 Sum_probs=46.4
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhc
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH 148 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~ 148 (184)
.+.++| +.|.++...||.++|+.|| -..|+++.+ . .|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD---T-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD---T-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET---T-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC---C-------eEEEEecCHHHHHHHHHhcc
Confidence 345667 9999999999999999999 456777763 1 79999999999999999774
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.61 E-value=0.01 Score=41.63 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=51.6
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
....-|.|-+.|... .+.+.+.|++||.|++..... ...+-.|.|.+..+|++|+. .||..+.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~---------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~ 86 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN---------TGNWMHIRYQSKLQARKALS-KDGRIFGES 86 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS---------SSSEEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC---------CCCeEEEEeCCHHHHHHHHH-hCCeEecCC
Confidence 345678888988775 566777899999999887621 11399999999999999996 699999864
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.05 E-value=0.0059 Score=44.14 Aligned_cols=34 Identities=12% Similarity=0.037 Sum_probs=27.3
Q ss_pred EEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcC
Q 030012 111 EIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG 149 (184)
Q Consensus 111 ~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g 149 (184)
+++|+.+. .+++|||||+|.+.++|++|++.+++
T Consensus 2 ~~kl~ln~-----~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNG-----KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEEC-----SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecC-----ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 45555531 36899999999999999999998875
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.95 E-value=0.0029 Score=54.46 Aligned_cols=56 Identities=9% Similarity=0.145 Sum_probs=40.9
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHH
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMD 145 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~ 145 (184)
..+.|||. .+..+++.+|.++|++||.|.++.+-.+ + | -|+.|||.+.++++.++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~---~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES---F--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS---S--S---EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc---C--C---eEEEEEeCCHHHHHHHHh
Confidence 35789997 7999999999999999999999877542 1 2 499999999999886653
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.89 E-value=0.0025 Score=45.95 Aligned_cols=40 Identities=13% Similarity=-0.038 Sum_probs=36.6
Q ss_pred CCcceEEEEEECCHHHHHHHHHHh-cCCeeCCCCCCCCceEEEeecC
Q 030012 124 DRAMVLCFVEFDDPKCARTAMDAL-HGYKFDDKKPDSPTLKIQFAHF 169 (184)
Q Consensus 124 g~~~G~afV~F~~~~~A~~Ai~~l-~g~~~~g~~~~~~~l~V~~a~~ 169 (184)
.+.+|+++|+|.+.++|++|++.+ ||..++| . +.++++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~-----~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-E-----WTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-E-----EEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-c-----eecccccC
Confidence 467899999999999999999999 9999999 6 99999864
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.87 E-value=0.3 Score=42.34 Aligned_cols=56 Identities=21% Similarity=0.428 Sum_probs=46.0
Q ss_pred CCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhc
Q 030012 81 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH 148 (184)
Q Consensus 81 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~ 148 (184)
..+.++|+ .|..+...+|.++|+.||. .+|+++.+ -.|||.|.+.+.|..+++.+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd----------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD----------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS----------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC----------CeEEEEECCHHHHHHHHHHHH
Confidence 34577777 8888999999999999995 45666542 179999999999999999884
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.12 E-value=0.092 Score=37.36 Aligned_cols=79 Identities=20% Similarity=0.173 Sum_probs=50.2
Q ss_pred CCEEEEcCCCCCCcHHHHHHhhcCCCCEEEE-EEeecC----------CCCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Q 030012 82 SNLLFVDGLPTDCTRREVSHLFRPFVGYREI-RVIHKE----------PRRTGDRAMVLCFVEFDDPKCARTAMDALHGY 150 (184)
Q Consensus 82 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v-~l~~~~----------~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~ 150 (184)
...|.|-+-|++.+ ..+-+.|++||.|.+- ...+.. .....-....+-.|+|++..+|++|+. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45566777766554 4566689999998762 111100 000000123588999999999999995 8999
Q ss_pred eeCCCCCCCCceEEEee
Q 030012 151 KFDDKKPDSPTLKIQFA 167 (184)
Q Consensus 151 ~~~g~~~~~~~l~V~~a 167 (184)
.|.|.. |-|..-
T Consensus 85 ii~G~m-----IGV~Py 96 (132)
T 3p3d_A 85 VFNGVL-----LGVIPY 96 (132)
T ss_dssp EETTEE-----CEEEEC
T ss_pred EeCcEE-----EEEEEC
Confidence 998864 555543
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=69.59 E-value=0.95 Score=30.57 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=0.0
Q ss_pred CCCCEEEEcCCCCCCcHHH
Q 030012 80 GESNLLFVDGLPTDCTRRE 98 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~ 98 (184)
....+|||+|||+++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456899999999999863
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=67.90 E-value=15 Score=22.54 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=41.0
Q ss_pred EEEEc-CCCCCCcHHHHHHhhcCCCC-----EEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCCCC
Q 030012 84 LLFVD-GLPTDCTRREVSHLFRPFVG-----YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 157 (184)
Q Consensus 84 ~lfVg-nLp~~~te~~L~~~F~~~G~-----i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~~~g~~~ 157 (184)
++||. +--..++..+|..++..-+. |-.+++.. .|.||+-.. +.++.+++.|++..+.|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-----------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~- 68 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD-----------NASYVEILN-GKGPHVLKVMKNTTVKGKQ- 68 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS-----------SCEEEEECT-TCHHHHHHHHTTCCC---C-
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC-----------CcEEEEECH-HHHHHHHHHhccccCcCce-
Confidence 45553 22345666777777765444 34455532 188999764 5678889999999999997
Q ss_pred CCCceEEEeec
Q 030012 158 DSPTLKIQFAH 168 (184)
Q Consensus 158 ~~~~l~V~~a~ 168 (184)
++|+.++
T Consensus 69 ----~~v~~~~ 75 (76)
T 2g0c_A 69 ----LKVNKAN 75 (76)
T ss_dssp ----CCEEECC
T ss_pred ----EEEEECC
Confidence 8887664
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=39.02 E-value=1.1e+02 Score=22.33 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=39.5
Q ss_pred CEEEEcCCCC-C--------CcHHHHHHhh--cCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHH-HHHHHHHhcCC
Q 030012 83 NLLFVDGLPT-D--------CTRREVSHLF--RPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKC-ARTAMDALHGY 150 (184)
Q Consensus 83 ~~lfVgnLp~-~--------~te~~L~~~F--~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~-A~~Ai~~l~g~ 150 (184)
.++.|-|++. . .+..+|++.| +.|..+...-+ .. . .-+.|++.|+|.+.-. ...|+..-+.+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l-~~---~--~Gh~g~aIv~F~~dw~Gf~~A~~fek~F 86 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPL-WN---Y--LGHSGTAIVEFNKDWNGLHNGLLFDKAY 86 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEE-EC---S--SBEEEEEEEECCSSHHHHHHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEec-cc---C--CCCceeEEEEecCChHHHHHHHHHHHHH
Confidence 4566677775 1 3457899977 89987664444 42 2 2367899999987443 44454433334
Q ss_pred eeCC
Q 030012 151 KFDD 154 (184)
Q Consensus 151 ~~~g 154 (184)
+..+
T Consensus 87 e~~~ 90 (172)
T 4e8u_A 87 TVDG 90 (172)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 4433
No 225
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=36.80 E-value=5.6 Score=27.54 Aligned_cols=27 Identities=7% Similarity=-0.074 Sum_probs=0.0
Q ss_pred EEEEEECCHHHHHHHHHHhcCCeeCCC
Q 030012 129 LCFVEFDDPKCARTAMDALHGYKFDDK 155 (184)
Q Consensus 129 ~afV~F~~~~~A~~Ai~~l~g~~~~g~ 155 (184)
+.|++|++...+..|+..++|....++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~ 32 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGR 32 (135)
T ss_dssp ---------------------------
T ss_pred cccccccCCCchhhhhhhccCCCCCCC
Confidence 678999999999999999998877776
No 226
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=32.05 E-value=1.1e+02 Score=20.08 Aligned_cols=57 Identities=18% Similarity=0.175 Sum_probs=45.9
Q ss_pred CCCCEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEECCHHHHHHHHHHh
Q 030012 80 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL 147 (184)
Q Consensus 80 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l 147 (184)
..++-+-|-|+|..+-..++.-.....|---.|..+. |-|.+.|.+.++...|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid-----------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-----------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-----------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-----------CeeEEEecCChHHHHHHHHH
Confidence 4466777889999999888877777777767777653 37999999999999999877
No 227
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=31.33 E-value=9.7 Score=27.20 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=15.6
Q ss_pred HHHHHhhcCCCCEEEEEEeecCCCCCCCCcceEEEEEEC
Q 030012 97 REVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFD 135 (184)
Q Consensus 97 ~~L~~~F~~~G~i~~v~l~~~~~~~~~g~~~G~afV~F~ 135 (184)
+|+.++|...|.|+ +.. ..+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vk---wfn--------~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICK---WFN--------VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEE---EEE--------TTTTEEEEEEE
T ss_pred CcccccccceeEEE---EEE--------CCCCeeEEeeC
Confidence 45667777767644 333 23579999975
No 228
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=22.74 E-value=49 Score=17.70 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=12.8
Q ss_pred CCCcHHHHHHhhcCC
Q 030012 92 TDCTRREVSHLFRPF 106 (184)
Q Consensus 92 ~~~te~~L~~~F~~~ 106 (184)
..++.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 578999999999875
No 229
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=21.63 E-value=63 Score=25.11 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=25.2
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEe
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVI 115 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~ 115 (184)
..+.|+|||+.++..-|.+++.. ..+....++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 46789999999999999999977 555554443
No 230
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.72 E-value=1.7e+02 Score=18.80 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=19.1
Q ss_pred CEEEEEEeecCCCCCCCCcceEEEEEECC
Q 030012 108 GYREIRVIHKEPRRTGDRAMVLCFVEFDD 136 (184)
Q Consensus 108 ~i~~v~l~~~~~~~~~g~~~G~afV~F~~ 136 (184)
+|.++++..- ...|+-++||-|+|.+
T Consensus 5 ~iTdVri~~~---~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKI---QTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEEC---CSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEc---CCCCCEEEEEEEEECC
Confidence 4677777653 2347889999999975
No 231
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=20.46 E-value=41 Score=26.33 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=25.4
Q ss_pred CEEEEcCCCCCCcHHHHHHhhcCCCCEEEEEEe
Q 030012 83 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVI 115 (184)
Q Consensus 83 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~l~ 115 (184)
....|+|||+.++..-|.+++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 457899999999999999999765555554443
Done!