BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030014
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O0M|A Chain A, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
pdb|3O0M|B Chain B, Crystal Structure Of A Zn-Bound Histidine Triad Family
Protein From Mycobacterium Smegmatis
Length = 149
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 51 CVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCA 110
CVFC I+ G++PA+++YE + L ILD P + GH+L++PK+H L TPP VA M A
Sbjct: 7 CVFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAA 66
Query: 111 KVPLISNAIMKA 122
I+ A ++
Sbjct: 67 VGQRIARAARES 78
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVV 105
G NDC+FCKI+ G+ P+ K+YE + L LD + + GH+L++PK H +
Sbjct: 33 GSMNDCLFCKIVAGDIPSSKVYEDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQA 92
Query: 106 AAMCAKVPLISNAIMKATDAGMCQIFYTAVTT---KLSHSHLPLFFLPSYS 153
A + A++P I+ A+ KAT A I T + H+H+ L +P ++
Sbjct: 93 ANLFARIPKIARALQKATKADGLNIINNNEETAGQTVFHAHVHL--VPRFA 141
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
Length = 149
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCL 97
+C+FCKII+G+ P K+ E L +D NPLS GH L++PK H SCL
Sbjct: 12 NCIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCL 59
>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
pdb|4EGU|B Chain B, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
Length = 119
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMC 109
DC+FCKI GE P+ K+YE D L D NP++ H L+VPK H+ L P + +
Sbjct: 5 DCIFCKIANGEIPSTKVYEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEM-DIV 63
Query: 110 AKVPLISNAIMKATDAGMCQIFYTAVTT-------KLSHSHLPLFF---LPSYSLG 155
+ + ++ N I A + G Q + + ++ H H + LP+Y G
Sbjct: 64 SHIHVVINKI--AKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLPNYEAG 117
>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|B Chain B, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|C Chain C, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|D Chain D, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
Length = 161
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 35 AQQRLSHSQESGHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKS-H 93
AQ + S + ++N+ +F K+IR E P+V++YE D + +D P + GH+L++PK
Sbjct: 14 AQTQGPGSMKQAYDNNNIFAKLIRNEIPSVRVYEDDDVIAFMDIMPQAPGHTLVIPKKGS 73
Query: 94 FSCLDATPPSVVAAMCAKVPLISNAIMKATDA-GMCQIFYTAVTTKLSHSHLPLFFLP 150
+ LDA ++ + A V I+ A+ KA A G+ + + ++ + HL +P
Sbjct: 74 RNLLDADTETLFPVIKA-VQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHIIP 130
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|B Chain B, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|C Chain C, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|D Chain D, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|E Chain E, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
Length = 145
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 50 DCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMC 109
+C+FCKII G+ P+ K+YE + L LD + ++ GH+L++PK+H + +
Sbjct: 6 NCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYF 65
Query: 110 AKVPLISNAIMKATD-AGMCQIFYTAVTTKLSHSHLPLFFLPSYSLG 155
VP I+ AI + G+ + S H + +P Y G
Sbjct: 66 HAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKG 112
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|B Chain B, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|C Chain C, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|D Chain D, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
Length = 147
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAM 108
++C+FCKII G+ K+YE + L LD + ++ GH+L++PK H + A P + + +
Sbjct: 9 DNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHI 68
Query: 109 CAKVPLISNAI 119
+ VP I+NAI
Sbjct: 69 FSVVPKIANAI 79
>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad
Nucleotide-Binding Protein St2152 From Sulfolobus
Tokodaii Strain7
Length = 149
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%)
Query: 51 CVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCA 110
C FC II E +YE + ILD P+SLGH+L++PK HF +A +
Sbjct: 1 CTFCSIINRELEGYFVYEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAK 60
Query: 111 KVPLISNAIMKATDA 125
V L+S I A A
Sbjct: 61 VVKLVSLGIKDAVKA 75
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
pdb|1XQU|B Chain B, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
Length = 147
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAM 108
+CVFCKII+ E P+ YE + + I D NP + H LI+PK H + + S A +
Sbjct: 35 ENCVFCKIIKRELPSTIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINES-NAQI 93
Query: 109 CAKVPLISNAIMKATDAGMCQIFYTAVTT 137
+ +N + A D G+ + Y +T
Sbjct: 94 LIDIHKAANKV--AEDLGIAEKGYRLITN 120
>pdb|3O1X|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C84a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDAT 100
D +F KIIR E PA ++E D CL D +P + H L++PK H S + A
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAA 66
>pdb|1RZY|A Chain A, Crystal Structure Of Rabbit Hint Complexed With N-
Ethylsulfamoyladenosine
pdb|3QGZ|A Chain A, Re-Investigated High Resolution Crystal Structure Of
Histidine Triad Nucleotide-Binding Protein 1 (Hint1)
From Rabbit Complexed With Adenosine
Length = 126
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDAT 100
D +F KIIR E PA ++E D CL D +P + H L++PK H S + A
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAA 66
>pdb|3RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With Gmp
pdb|4RHN|A Chain A, Histidine Triad Nucleotide-binding Protein (hint) From
Rabbit Complexed With Adenosine
pdb|5RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With 8-Br-Amp
pdb|6RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Without Nucleotide
Length = 115
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDAT 100
D +F KIIR E PA ++E D CL D +P + H L++PK H S + A
Sbjct: 4 GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAA 55
>pdb|1KPA|A Chain A, Pkci-1-Zinc
pdb|1KPA|B Chain B, Pkci-1-Zinc
pdb|1KPC|A Chain A, Pkci-1-Apo+zinc
pdb|1KPC|B Chain B, Pkci-1-Apo+zinc
pdb|1KPC|C Chain C, Pkci-1-Apo+zinc
pdb|1KPC|D Chain D, Pkci-1-Apo+zinc
pdb|1KPE|A Chain A, Pkci-Transition State Analog
pdb|1KPF|A Chain A, Pkci-Substrate Analog
pdb|1AV5|A Chain A, Pkci-Substrate Analog
pdb|1AV5|B Chain B, Pkci-Substrate Analog
pdb|1KPE|B Chain B, Pkci-Transition State Analog
Length = 126
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCL 97
D +F KIIR E PA ++E D CL D +P + H L++PK H S +
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQI 63
>pdb|1KPB|A Chain A, Pkci-1-Apo
pdb|1KPB|B Chain B, Pkci-1-Apo
Length = 125
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCL 97
D +F KIIR E PA ++E D CL D +P + H L++PK H S +
Sbjct: 14 GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQI 62
>pdb|3TW2|A Chain A, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
pdb|3TW2|B Chain B, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
Length = 126
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCL 97
D +F KIIR E PA ++E D CL D +P + H L++PK H S +
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQI 63
>pdb|4EQE|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQE|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQG|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQG|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQH|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
pdb|4EQH|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
Length = 128
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCL 97
D +F KIIR E PA ++E D CL D +P + H L++PK H S +
Sbjct: 17 GDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQI 65
>pdb|3O1Z|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) Double Cysteine
Mutant From Rabbit
Length = 126
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDAT 100
D +F KIIR E PA ++E D L D +P + H L++PK H S + A
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAA 66
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLD---ATPPSVV 105
+ C+FCKI + + P+ +YE D D NP++ H L++PK H + L+ + +
Sbjct: 7 DSCIFCKIAQKQIPSTIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFI 66
Query: 106 AAMCAKVPLISN 117
+ KV LI
Sbjct: 67 GKVLYKVSLIGK 78
>pdb|3P0T|A Chain A, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
pdb|3P0T|B Chain B, Crystal Structure Of An Hit-Like Protein From
Mycobacterium Paratuberculosis
Length = 138
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 51 CVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCA 110
+F KII E P +YE D + L P++ GH+L+VP+ V +A
Sbjct: 7 SIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQ----DVDSAAFN 62
Query: 111 KVPLISNAIMKATDAGMCQIFYTA----VTTKLSHSHLPLFFLPSYSLGFLALSCIK 163
+V +S I KA +C+ F T + L HL + P+ SL + +
Sbjct: 63 RVMGVSQLIGKA----VCKAFRTERSGLIIAGLEVPHLHVHVFPTRSLSDFGFANVD 115
>pdb|3O1C|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C38a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDAT 100
D +F KIIR E PA ++E D L D +P + H L++PK H S + A
Sbjct: 15 GDTIFGKIIRKEIPAKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAA 66
>pdb|3R6F|A Chain A, Crystal Structure Of A Zinc-Containing Hit Family Protein
From Encephalitozoon Cuniculi
Length = 135
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 51 CVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCA 110
C+FC + R A +YE D ++D PLS GH L++PK+H L P ++ +
Sbjct: 8 CIFCTLYR--KGANIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEELSGVLD 65
Query: 111 KV 112
+
Sbjct: 66 TI 67
>pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|H Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
Length = 253
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 43/110 (39%), Gaps = 18/110 (16%)
Query: 73 LCILD--TNPLSLG-----------HSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAI 119
L ILD T+P +LG H++IVPK + L+AT V VPLI
Sbjct: 107 LLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTN 166
Query: 120 MKATDAGMCQIFYTAVTTKLSHSHLPLFFLPSYSLGFLALSCIKSATGWG 169
+ T + + V T H S G LAL + A G G
Sbjct: 167 LARTXRXLQEENIWIVGTAGEADH---TLYQSKXTGRLAL--VXGAEGEG 211
>pdb|3N1T|A Chain A, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|B Chain B, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|E Chain E, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|F Chain F, Crystal Structure Of The H101a Mutant Echint Gmp Complex
Length = 119
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAM 108
+ +F KIIR E P+ +Y+ D D +P + H LI+P ++ A+
Sbjct: 3 EETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQAL 62
Query: 109 CAKVPLISNAIMKATDAGMCQIFYTAVTTKLSHSHLPLFFLPSYSLG 155
+I+ A A G+ + Y + H ++ + + LG
Sbjct: 63 GR---MITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIAMHLLG 106
>pdb|3N1S|A Chain A, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|B Chain B, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|E Chain E, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|F Chain F, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|I Chain I, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|J Chain J, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|M Chain M, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|N Chain N, Crystal Structure Of Wild Type Echint Gmp Complex
Length = 119
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 49 NDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCLDATPPSVVAAM 108
+ +F KIIR E P+ +Y+ D D +P + H LI+P ++ A+
Sbjct: 3 EETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQAL 62
Query: 109 CAKVPLISNAIMKATDAGMCQIFYTAVTTKLSHSHLPLFFLPSYSLG 155
+I+ A A G+ + Y + H ++ + + LG
Sbjct: 63 GR---MITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLG 106
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 28.1 bits (61), Expect = 3.1, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 54 CKIIRGESPAVKLYEYDTCLCILDTNPLSLGH-----------SLIVPKSHFSCLDATPP 102
C I ESP V+L+ T +C+L + H +PK ++ ++ T
Sbjct: 5 CGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTAS 64
Query: 103 SV 104
SV
Sbjct: 65 SV 66
>pdb|3VQ1|C Chain C, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|D Chain D, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|C Chain C, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|D Chain D, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 144
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 14/52 (26%)
Query: 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCL 97
GH++D FC+ ++GE+ + P S ++ PK H+ C+
Sbjct: 81 GHDDDYSFCRALKGETVNTSI-------------PFSF-EGILFPKGHYRCV 118
>pdb|2Z64|C Chain C, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 135
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 14/52 (26%)
Query: 46 GHENDCVFCKIIRGESPAVKLYEYDTCLCILDTNPLSLGHSLIVPKSHFSCL 97
GH++D FC+ ++GE+ + P S ++ PK H+ C+
Sbjct: 77 GHDDDYSFCRALKGETVNTSI-------------PFSF-EGILFPKGHYRCV 114
>pdb|4EZC|A Chain A, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZC|B Chain B, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZC|C Chain C, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZD|A Chain A, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
pdb|4EZD|B Chain B, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
pdb|4EZD|C Chain C, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
Length = 384
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 128 CQIFYTAVTTKLSHSHLPLFFLPSYSLGFLALSCIKSATG 167
C +F +A+ + LS LP+F LP +ALS SATG
Sbjct: 152 CPVFSSALNSVLSKWDLPVFTLPFN----MALSMYLSATG 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,002,710
Number of Sequences: 62578
Number of extensions: 170309
Number of successful extensions: 407
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 31
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)