BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030016
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5T2D3|OTUD3_HUMAN OTU domain-containing protein 3 OS=Homo sapiens GN=OTUD3 PE=1 SV=1
Length = 398
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 3/126 (2%)
Query: 2 VVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSP 61
V Y++K RE FEPF+EDD+PF+++ S+ GT+AG+ + A + N+ IH+ +P
Sbjct: 99 TVDYMIKQREDFEPFVEDDIPFEKHVASLAKPGTFAGNDAIVAFARNHQLNVVIHQLNAP 158
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKADADISAASIQSKTV 121
W IR + R +H++Y GEHY+ VR D+ S P ++ D + +K
Sbjct: 159 LWQIRGTEKSSVRELHIAYRYGEHYDSVRRINDN---SEAPAHLQTDFQMLHQDESNKRE 215
Query: 122 TSKLKG 127
K KG
Sbjct: 216 KIKTKG 221
>sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=3
Length = 1113
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 10/100 (10%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHR--HMS 60
+ Y+ +NRE FE FIE F+EY + +E W G +E+ A SL+ + I+R ++S
Sbjct: 69 IHYLRENREKFEAFIEGS--FEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVS 126
Query: 61 PRWYIRNFDYHEARMIHLSYHDGEHYN---GVRLKEDSCI 97
P N ++ E + L + +G HY+ ++ KE S +
Sbjct: 127 PSQVTEN-NFPEK--VLLCFSNGNHYDIVYPIKYKESSAM 163
>sp|B2RRE7|OTUD4_MOUSE OTU domain-containing protein 4 OS=Mus musculus GN=Otud4 PE=1 SV=1
Length = 1107
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHR--HMS 60
++Y+ +NRE FE FIE F+EY + +E W G +E+ A SL+ + I++ ++S
Sbjct: 69 IRYLRENREKFEAFIEGS--FEEYLKRLENPQEWVGQVEISALSLMYRKDFVIYQEPNVS 126
Query: 61 PRWYIRNFDYHEARMIHLSYHDGEHYNGV 89
P N ++ E + L + +G HY+ V
Sbjct: 127 PSHVTEN-NFPEK--VLLCFSNGNHYDIV 152
>sp|Q9NP73|ALG13_HUMAN UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Homo
sapiens GN=ALG13 PE=1 SV=2
Length = 1137
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHM-SP 61
V Y+ +N++TFE ++E F++Y + + AG +E++A SL+ + + ++R P
Sbjct: 266 VSYMRENQQTFESYVEGS--FEKYLERLGDPKESAGQLEIRALSLIYNRDFILYRFPGKP 323
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKE 93
Y+ + Y + I L Y HY+ V K+
Sbjct: 324 PTYVTDNGYEDK--ILLCYSSSGHYDSVYSKQ 353
>sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1
Length = 293
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 2 VVQYIVKNRETFEPFIED----DV----PFDEYCQSMETDGTWAGHMELQAASLVTHSNI 53
QY+ + + F PF+ + D+ F++YC + W G +EL+A S V I
Sbjct: 183 TAQYMRSHADDFMPFLTNPNTGDMYTAEEFEKYCSDVADTAAWGGQLELKALSQVLQLPI 242
Query: 54 CIHRHMSPRWYI-RNFDYHEARMIHL--SYHDGEHYNGV 89
+ + SP I +D + +I++ +Y GEHYN V
Sbjct: 243 EVIQADSPCITIGEEYDKPKITLIYMRHAYGLGEHYNSV 281
>sp|Q9D8C3|ALG13_MOUSE UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Mus
musculus GN=Alg13 PE=2 SV=2
Length = 1166
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHM-SP 61
V Y+ +N++ FE ++E F++Y + + AG +EL+A SL+ + + I+R+ P
Sbjct: 260 VSYMKENQQAFESYVEGS--FEKYLERLGDPKESAGQLELKALSLIYNRDFIIYRYPGKP 317
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKE 93
+ + + + I L Y + HY+ V KE
Sbjct: 318 PTQVTDNGFEDK--IILCYSNNGHYDSVYSKE 347
>sp|Q8N6M0|OTU6B_HUMAN OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1
SV=1
Length = 293
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 4 QYIVKNRETFEPFIEDD------VP--FDEYCQSMETDGTWAGHMELQAASLVTHSNICI 55
+Y+ + E F PF+ + P F +YC+ + W G +EL+A S + + I I
Sbjct: 185 EYMQSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEI 244
Query: 56 HRHMSPRWYIRNFDYHEARMIHL----SYHDGEHYNGV 89
+ SP + +Y + +I + +Y GEHYN V
Sbjct: 245 IQADSPPIIV-GEEYSKKPLILVYMRHAYGLGEHYNSV 281
>sp|Q7L8S5|OTU6A_HUMAN OTU domain-containing protein 6A OS=Homo sapiens GN=OTUD6A PE=2
SV=1
Length = 288
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 9 NRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNF 68
N ET + F DD F YC ++ W G +EL+A S V + I + + SP I
Sbjct: 191 NPETSDSFGYDD--FMIYCDNIVRTTAWGGQLELRALSHVLKTPIEVIQADSPTLIIGE- 247
Query: 69 DYHEARMI----HLSYHDGEHYNGVRLKEDSCIGSARPIII 105
+Y + +I +Y GEHYN V E G P ++
Sbjct: 248 EYVKKPIILVYLRYAYSLGEHYNSVTPLEAGAAGGVLPRLL 288
>sp|Q5ZIP6|OTU6B_CHICK OTU domain-containing protein 6B OS=Gallus gallus GN=OTUD6B PE=2
SV=1
Length = 302
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 2 VVQYIVKNRETFEPFIED--------DVPFDEYCQSMETDGTWAGHMELQAASLVTHSNI 53
+YI + + F PF+ + F++YC + W G +EL+A S + + I
Sbjct: 192 TAKYIHSHFDDFLPFLTNPNTGDMYSKEEFEKYCDDIANTAAWGGQLELRALSHILQTPI 251
Query: 54 CIHRHMSPRWYI-RNFDYHEARMIHL--SYHDGEHYNGVRLKEDSC 96
+ + SP + + ++++ +Y GEHYN V+L D+
Sbjct: 252 EVVQMDSPSIIVGEEYSGKPIILVYMRHAYGLGEHYNSVKLLTDAT 297
>sp|Q7RTX8|HIN1L_HUMAN Putative HIN1-like protein OS=Homo sapiens GN=HIN1L PE=5 SV=1
Length = 443
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 6 IVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNIC--IHRHMSPRW 63
+ +NRE FE I F+ Y + +E W G ME+ A SL+ + + ++SP
Sbjct: 72 LRENREKFEAIIGGS--FEGYLKRLENPQEWVGQMEISALSLMYRKDFITNLEPNVSPSQ 129
Query: 64 YIRNFDYHEARMIHLSYHDGEHYN---GVRLKEDSCI 97
N ++ E + L + +G HY+ V+ KE S +
Sbjct: 130 VTEN-NFPEK--VLLCFSNGNHYDIVYPVKYKESSAM 163
>sp|Q6IE21|OTU6A_MOUSE OTU domain-containing protein 6A OS=Mus musculus GN=Otud6a PE=2
SV=1
Length = 290
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 5 YIVKNRETFEPFIEDDVP--------FDEYCQSMETDGTWAGHMELQAASLVTHSNICIH 56
Y+ K+ + F PF + F YC + + +W G +EL+A S V + I +
Sbjct: 178 YMRKHIDDFLPFFTEPEAGNFYTREDFLRYCDDIVHNASWGGQLELRALSHVLQTPIEVV 237
Query: 57 RHMSPRWYI-RNFDYHEARMIHLSY--HDGEHYNGVR 90
+ SP I + +++L Y GEHYN V+
Sbjct: 238 QANSPTIVIGEEYTRKPVTLVYLHYACDFGEHYNSVK 274
>sp|Q5VV17|OTUD1_HUMAN OTU domain-containing protein 1 OS=Homo sapiens GN=OTUD1 PE=2 SV=1
Length = 481
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 2 VVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNI 53
V YI + + F P IE DV E+ + DG WAG+ EL A + + NI
Sbjct: 343 TVHYIADHLDHFSPLIEGDV--GEFIIAAAQDGAWAGYPELLAMGQMLNVNI 392
>sp|P38747|OTU2_YEAST OTU domain-containing protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=OTU2 PE=1 SV=1
Length = 307
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 5 YIVKNRETFEPFIEDDVPF-----DEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHM 59
Y+ ++R+ F P++ D+ DEY + ME W G +E+ A S V I I
Sbjct: 212 YVQEHRDDFIPYLFDEETMKMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILMSG 271
Query: 60 SP-RWYIRNFDYHEARMIHL--SYHDGEHYNGV 89
P + Y E ++++ SY GEHYN +
Sbjct: 272 RPIQVYNECGKNPELKLVYYKHSYALGEHYNSL 304
>sp|Q9CUB6|OTUD1_MOUSE OTU domain-containing protein 1 OS=Mus musculus GN=Otud1 PE=2 SV=2
Length = 454
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 2 VVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNI 53
V YI + + F P IE DV E+ + DG WAG+ EL A + + NI
Sbjct: 316 TVHYIADHLDHFSPLIEGDV--GEFIIAAAQDGAWAGYPELLAMGQMLNVNI 365
>sp|Q5M8L0|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b
PE=2 SV=1
Length = 294
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 5 YIVKNRETFEPFIEDDVP--------FDEYCQSMETDGTWAGHMELQAASLVTHSNI-CI 55
Y+ + E F PF+ + F +YC + W G +EL+A S + + I I
Sbjct: 189 YMQNHAEDFLPFLTNSSTGDMYTQEEFLKYCTDIVNTPAWGGQLELRALSHILKTAIEVI 248
Query: 56 HRHMSPRWYIRNFDYHEARMIHL--SYHDGEHYNGVRLKEDSCIGS 99
SP + ++++ +Y GEHYN V L + S S
Sbjct: 249 QAESSPIVIGEEYSSKAITLVYMRHAYGLGEHYNSVELLDTSTENS 294
>sp|Q8K2H2|OTU6B_MOUSE OTU domain-containing protein 6B OS=Mus musculus GN=Otud6b PE=2
SV=1
Length = 294
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 2 VVQYIVKNRETFEPFIEDD------VP--FDEYCQSMETDGTWAGHMELQAASLVTHSNI 53
+Y+ + + F PF+ + P F +YC + W G +EL+A S + + I
Sbjct: 184 TAEYMQTHSDDFLPFLTNPSTGDMYTPEEFGKYCDDIVNTAAWGGQLELRALSHILQTPI 243
Query: 54 CIHRHMSPRWYI-RNFDYHEARMIHL--SYHDGEHYNGV 89
I + +P + + + ++++ +Y GEHYN V
Sbjct: 244 EILQADAPPIIVGEEYPRNPLVLVYMRHAYGLGEHYNSV 282
>sp|Q6GM06|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2
SV=1
Length = 294
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 5 YIVKNRETFEPFIEDDVP--------FDEYCQSMETDGTWAGHMELQAASLVTHSNI-CI 55
Y+ K E F PF+ + F +YC + W G +EL+A S + + I I
Sbjct: 189 YMQKRAEDFLPFLTNSSTGDMYTQEEFQKYCTDIVNTPAWGGQLELRALSHILKTPIEVI 248
Query: 56 HRHMSPRWYIRNFDYHEARMIHL--SYHDGEHYNGV 89
P + ++++ +Y GEHYN V
Sbjct: 249 QAESLPIVIGEEYSNKPITLVYMRHAYGLGEHYNSV 284
>sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5 OS=Mus musculus GN=Otud5 PE=1 SV=2
Length = 566
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS-P 61
+ Y++KN + F ++ +D F Y + H+E+QA + + + + ++++ + P
Sbjct: 248 MDYLMKNADYFSNYVTED--FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEP 305
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIG 98
+E I +SYH HYN V + IG
Sbjct: 306 INTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIG 342
>sp|Q2YDU3|OTUD5_RAT OTU domain-containing protein 5 OS=Rattus norvegicus GN=Otud5 PE=2
SV=2
Length = 566
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS-P 61
+ Y++KN + F ++ +D F Y + H+E+QA + + + + ++++ + P
Sbjct: 248 MDYLMKNADYFSNYVTED--FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEP 305
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIG 98
+E I +SYH HYN V + IG
Sbjct: 306 INTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIG 342
>sp|Q7ZX21|OTU5A_XENLA OTU domain-containing protein 5-A OS=Xenopus laevis GN=otud5-a PE=2
SV=1
Length = 513
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 2 VVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRH-MS 60
+ Y++KN + F ++ +D F Y + H+E+QA + + + + ++++
Sbjct: 200 CMDYLMKNADYFSNYVTED--FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTE 257
Query: 61 PRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIG 98
P +E I +SYH HYN V + IG
Sbjct: 258 PINTFHGIQKNEDEPIRVSYHRNIHYNSVVNPNKATIG 295
>sp|Q6GL44|OTUD5_XENTR OTU domain-containing protein 5 OS=Xenopus tropicalis GN=otud5 PE=2
SV=1
Length = 518
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRH-MSP 61
+ Y++KN + F ++ +D F Y + H+E+QA + + + + ++++ P
Sbjct: 206 MDYLMKNADYFSNYVTED--FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEP 263
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIG 98
+E I +SYH HYN V + IG
Sbjct: 264 INTFHGIQQNEDEPIRVSYHRNIHYNSVVNPNKATIG 300
>sp|Q640H3|OTU5B_XENLA OTU domain-containing protein 5-B OS=Xenopus laevis GN=otud5-b PE=2
SV=1
Length = 518
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRH-MSP 61
+ Y++KN + F ++ +D F Y + H+E+QA + + + + ++++ P
Sbjct: 206 MDYLMKNADYFSNYVTED--FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEP 263
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIG 98
+E I +SYH HYN V + IG
Sbjct: 264 INTFHGIQQNEDEPIRVSYHRNIHYNSVVNPNKATIG 300
>sp|Q9UUK3|OTU2_SCHPO Ubiquitin thioesterase otu2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=otu2 PE=4 SV=1
Length = 324
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 5 YIVKNRETFEPFIEDD-----VPFDEYCQSMETDGTWAGHMELQA 44
Y++K+ E FE F+ D+ +P +YC + + W +E+QA
Sbjct: 225 YVLKHCEQFEGFLLDEESGEVLPVSDYCNEIRNNSKWGSDIEIQA 269
>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1
Length = 571
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRH---- 58
+ Y++KN + F ++ +D F Y + H+E+QA + + + + ++++
Sbjct: 248 MDYLMKNADYFSNYVTED--FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGT 305
Query: 59 --MSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIG 98
+ P +E I +SYH HYN V + IG
Sbjct: 306 SAVEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIG 347
>sp|Q05B57|OTU1_BOVIN Ubiquitin thioesterase OTU1 OS=Bos taurus GN=YOD1 PE=2 SV=1
Length = 348
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 24 DEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDG 83
+EYC ++ D TW G +E+ S IC+ + R D + + L Y DG
Sbjct: 207 EEYCDWIKRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIY-DG 265
Query: 84 EHYNGVRL 91
HY+ + L
Sbjct: 266 IHYDPLHL 273
>sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1
Length = 301
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 24 DEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDG 83
+EYC + D TW G +E+ S IC+ + R D + + L Y DG
Sbjct: 160 EEYCTWIRRDDTWGGAIEVSILSKFYQCEICVVDTQTVRVDRFGEDAGYTKRVLLIY-DG 218
Query: 84 EHYNGVR 90
HY+ ++
Sbjct: 219 IHYDPLQ 225
>sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757 OS=Dictyostelium
discoideum GN=DDB_G0284757 PE=4 SV=2
Length = 766
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 23 FDEYCQSMETDGTWAGHMELQAASLVTHSNICI 55
+D+YC M +G W H+ L AA+ S I I
Sbjct: 692 WDDYCNDMSKNGNWGDHLTLLAAAEHFGSKISI 724
>sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A OS=Danio rerio GN=otud5a PE=2
SV=1
Length = 560
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRH-MSP 61
+ Y++KN + F ++ +D F Y + H+E+QA + + + + +++ P
Sbjct: 246 MDYLMKNADYFSNYVTED--FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQSGTEP 303
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIG 98
+ I +SYH HYN V + IG
Sbjct: 304 INTFHGIHQNNDEPIRVSYHRNIHYNSVVNPNKATIG 340
>sp|Q32Q05|OTU1_RAT Ubiquitin thioesterase OTU1 OS=Rattus norvegicus GN=Yod1 PE=2 SV=1
Length = 343
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 24 DEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDG 83
+EYC + D TW G +E+ S IC+ + R D + + L Y DG
Sbjct: 202 EEYCDWIRRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIY-DG 260
Query: 84 EHYN 87
HY+
Sbjct: 261 IHYD 264
>sp|P10383|OTU_DROME Protein ovarian tumor locus OS=Drosophila melanogaster GN=otu PE=2
SV=2
Length = 853
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIH 56
V+++ R FE I D FD Y Q M T+ EL+A S + N+ ++
Sbjct: 64 VRFMTLKRRIFEKEIPGD--FDSYMQDMSKPKTYGTMTELRAMSCLYRRNVILY 115
>sp|Q5VVQ6|OTU1_HUMAN Ubiquitin thioesterase OTU1 OS=Homo sapiens GN=YOD1 PE=1 SV=1
Length = 348
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 25 EYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGE 84
EYC ++ D TW G +E+ S IC+ + R D + + L Y DG
Sbjct: 208 EYCDWIKRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIY-DGI 266
Query: 85 HYNGVR 90
HY+ ++
Sbjct: 267 HYDPLQ 272
>sp|Q6NQ88|DDB2_ARATH Protein DAMAGED DNA-BINDING 2 OS=Arabidopsis thaliana GN=DDB2 PE=1
SV=1
Length = 557
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 38 GHMELQAASLVTHSNICIHRHMSP---RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKED 94
G+++L + +V HSN +RH++P W + D E+ +I + + E+YNG L
Sbjct: 390 GNLDLPSREIV-HSND-FNRHLTPFKAEWDPK--DTSES-LIVIGRYISENYNGTALHPI 444
Query: 95 SCIGSARPIIIKADADISAASIQSKTVTSKLKGAAGIINAGSIKLVMAGSGCENSEKVEE 154
I ++ ++ A++ +I + T +KL ++ +GS + + +N+E VEE
Sbjct: 445 DFIDASNGQLV---AEVMDPNITTITPVNKLHPRDDVLASGSSRSLFIWRPQDNTEMVEE 501
>sp|Q1KZ59|POLG_CILVC RNA replication protein OS=Citrus leprosis virus C (isolate Citrus
sinesis/Brazil/Cordeiropolis/2003) PE=4 SV=1
Length = 2512
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 24 DEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHE-ARMIHL 78
DE+ S+E DG + L S + NIC+H R I +F ++ +R IHL
Sbjct: 736 DEFLDSLERDGVYGNKFTLILISKTFNVNICVHLK-GGRELITHFISNKGSRFIHL 790
>sp|Q9U505|AT5G_MANSE ATP synthase lipid-binding protein, mitochondrial OS=Manduca sexta
PE=2 SV=1
Length = 131
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 71 HEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKADADISAA-SIQSKTVTSKLKGAA 129
AR+I + N ++ + + + ++ A A +SA S Q+ +VT + AA
Sbjct: 3 SAARLIAPAARSAIFSNAAVVRPLAAVSTQTQLVPAAPAQLSAVRSFQTTSVTKDIDSAA 62
Query: 130 GIINAGSIKLVMAGSGC 146
I AG+ + +AGSG
Sbjct: 63 KFIGAGAATVGVAGSGA 79
>sp|Q8CB27|OTU1_MOUSE Ubiquitin thioesterase OTU1 OS=Mus musculus GN=Yod1 PE=1 SV=1
Length = 343
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 24 DEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDG 83
++YC + D TW G +E+ S IC+ + R D + + L Y DG
Sbjct: 202 EDYCDWIRRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIY-DG 260
Query: 84 EHYN 87
HY+
Sbjct: 261 IHYD 264
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,741,617
Number of Sequences: 539616
Number of extensions: 2527517
Number of successful extensions: 6771
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 6753
Number of HSP's gapped (non-prelim): 47
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)