BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030017
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48612|PELO_DROME Protein pelota OS=Drosophila melanogaster GN=pelo PE=2 SV=2
Length = 395
Score = 202 bits (514), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 132/178 (74%)
Query: 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNV 60
MQEGLAH+ L+ SMT+ RS+IE SIPRK ++ +E L KF+E V+Q+ L+HV+F+V
Sbjct: 142 MQEGLAHVCLITASMTLVRSKIEVSIPRKRKGSVQQHEKGLAKFYEQVMQSILRHVNFDV 201
Query: 61 VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPN 120
V+C +IASPGF +DQF+ ++ +A + + +++NKS+ +LVH SSG+KHSLRE+L P
Sbjct: 202 VKCVLIASPGFVRDQFYDYMFQQAVKMDYKLLLDNKSKFMLVHASSGFKHSLREILQDPA 261
Query: 121 VMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
V+ + DTKAA EV+AL+ F+ ML +P +A YG KHV A E A++TLLI+D+LFR
Sbjct: 262 VLAKMSDTKAAGEVKALEQFYMMLQCEPAKAFYGKKHVLQAAESQAIETLLISDNLFR 319
>sp|Q5U567|PELO_XENLA Protein pelota homolog OS=Xenopus laevis GN=pelo PE=2 SV=1
Length = 383
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 128/178 (71%)
Query: 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNV 60
MQEGLAHI LV SMT+ R++IETSIPRK +E AL KF+E V+Q L+H++F+V
Sbjct: 142 MQEGLAHICLVTPSMTLLRAKIETSIPRKRRGNCTQHEKALEKFYEQVMQGILRHINFDV 201
Query: 61 VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPN 120
V+ ++ASPGF ++QF L L A ++ L+ ++EN+ + + VH+SSG K+SL EVL P
Sbjct: 202 VKVVLVASPGFVREQFCEFLFLRAVKQDLKILLENRGKFLQVHSSSGRKYSLTEVLCDPA 261
Query: 121 VMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
V + DTKAA E++AL DF+ ML ++P RA YG K VE A+E +AV TLL+TD+LFR
Sbjct: 262 VTARLSDTKAACEIKALGDFYKMLQHEPDRAFYGIKQVEKANEALAVDTLLVTDELFR 319
>sp|Q7ZWC4|PELO_DANRE Protein pelota homolog OS=Danio rerio GN=pelo PE=2 SV=1
Length = 385
Score = 189 bits (480), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 130/178 (73%)
Query: 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNV 60
MQEGLA+++LV +MT+ R+++E +IPRK + ++ AL +F+E V+Q L+H +F+V
Sbjct: 142 MQEGLANLVLVTPAMTLLRAKVEVTIPRKRKGSCTQHDKALERFYEAVMQGILRHFNFDV 201
Query: 61 VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPN 120
V+C ++ASPGF KDQF +L EA R+ + ++EN+S+ ++VH+SSG+K+SL+EVL P
Sbjct: 202 VKCILVASPGFVKDQFISYLFKEAVRQDCKLLLENRSKFMVVHSSSGHKYSLKEVLCDPA 261
Query: 121 VMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
V + DTKAA EV+AL+DF+ ML +P RA YG HVE A E +A+ LLI+D LFR
Sbjct: 262 VTARLSDTKAAGEVKALEDFYKMLQQEPDRAFYGLAHVERASEALAIDILLISDTLFR 319
>sp|Q58DV0|PELO_BOVIN Protein pelota homolog OS=Bos taurus GN=PELO PE=2 SV=2
Length = 385
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 130/178 (73%)
Query: 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNV 60
MQEGLAHI LV SMT+TR+++E +IPRK + ++ AL +F+E V+QA +H+ F+V
Sbjct: 142 MQEGLAHICLVTPSMTLTRAKVEVNIPRKRKGNCSQHDRALERFYEQVVQAIQRHIHFDV 201
Query: 61 VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPN 120
V+C ++ASPGF ++QF ++ +A + + ++EN+S+ + VH SSG+K+SL+E L P
Sbjct: 202 VKCVLVASPGFVREQFCDYMFQQAVKTDNKVLLENRSKFLQVHASSGHKYSLKEALCDPT 261
Query: 121 VMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
V + + DTKAA EV+AL DF+ ML ++P RA YG K VE A+E MA+ TLLI+D+LFR
Sbjct: 262 VASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFR 319
>sp|Q9BRX2|PELO_HUMAN Protein pelota homolog OS=Homo sapiens GN=PELO PE=1 SV=2
Length = 385
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 130/178 (73%)
Query: 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNV 60
MQEGLAHI LV SMT+TR+++E +IPRK + ++ AL +F+E V+QA +H+ F+V
Sbjct: 142 MQEGLAHICLVTPSMTLTRAKVEVNIPRKRKGNCSQHDRALERFYEQVVQAIQRHIHFDV 201
Query: 61 VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPN 120
V+C ++ASPGF ++QF +L +A + + ++EN+S+ + VH SSG+K+SL+E L P
Sbjct: 202 VKCILVASPGFVREQFCDYLFQQAVKTDNKLLLENRSKFLQVHASSGHKYSLKEALCDPT 261
Query: 121 VMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
V + + DTKAA EV+AL DF+ ML ++P RA YG K VE A+E MA+ TLLI+D+LFR
Sbjct: 262 VASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFR 319
>sp|Q5ZK01|PELO_CHICK Protein pelota homolog OS=Gallus gallus GN=PELO PE=2 SV=1
Length = 385
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 131/178 (73%)
Query: 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNV 60
MQEGLAH+ LV SMT+TR+++E +IPRK + ++ AL +F+E V+QA +H++F V
Sbjct: 142 MQEGLAHVCLVTPSMTLTRAKVEVNIPRKRKGNCSQHDRALERFYEQVVQAIQRHINFEV 201
Query: 61 VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPN 120
V+C ++ASPGF ++QF ++ +A + + ++EN+S+ + VH+SSG+K+ L+E L P
Sbjct: 202 VKCVLVASPGFVREQFCDYMFQQAVKTDNKLLLENRSKFLQVHSSSGHKYVLKEALCDPA 261
Query: 121 VMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
V + + DTKAA EV+AL DF+ ML ++P RA YG KHVE A+E MA+ TLLI+D+LFR
Sbjct: 262 VTSRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKHVEKANEAMAIDTLLISDELFR 319
>sp|Q5RCE3|PELO_PONAB Protein pelota homolog OS=Pongo abelii GN=PELO PE=2 SV=1
Length = 385
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 130/178 (73%)
Query: 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNV 60
MQEGLAHI LV SMT+TR+++E +IPRK + ++ AL +F+E V+QA +H+ F+V
Sbjct: 142 MQEGLAHICLVTPSMTLTRAKVEVNIPRKRKGNCSQHDRALERFYEQVVQAIQRHIHFDV 201
Query: 61 VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPN 120
V+C ++ASPGF ++QF ++ +A + + ++EN+S+ + VH SSG+K+SL+EVL P
Sbjct: 202 VKCILVASPGFVREQFCDYMFQQAVKTDNKLLLENRSKFLQVHASSGHKYSLKEVLCDPT 261
Query: 121 VMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
V + + DTKAA EV+AL DF+ ML + P RA YG K VE A+E MA+ TLLI+D+LFR
Sbjct: 262 VASRLSDTKAAGEVKALDDFYKMLQHGPDRAFYGLKQVEKANEAMAIDTLLISDELFR 319
>sp|Q5XIP1|PELO_RAT Protein pelota homolog OS=Rattus norvegicus GN=Pelo PE=2 SV=1
Length = 385
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 131/178 (73%)
Query: 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNV 60
MQEGLAH+ LV SMT+TR+++E +IPRK + ++ AL +F+E V+QA +H++F V
Sbjct: 142 MQEGLAHVCLVTPSMTLTRAKVEVNIPRKRKGNCSQHDRALERFYEQVVQAIQRHINFEV 201
Query: 61 VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPN 120
V+C ++ASPGF ++QF ++ +A + + ++EN+S+ + VH SSG+K+SL+EVL P
Sbjct: 202 VKCILVASPGFVREQFCDYMFQQAVKTDNKVLLENRSKFLQVHASSGHKYSLKEVLCDPT 261
Query: 121 VMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
V + + DTKAA EV+AL DF+ ML ++P RA YG K VE A+E +A+ TLLI+D+LFR
Sbjct: 262 VASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVERANEALAIDTLLISDELFR 319
>sp|Q80X73|PELO_MOUSE Protein pelota homolog OS=Mus musculus GN=Pelo PE=2 SV=3
Length = 385
Score = 187 bits (475), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 86/178 (48%), Positives = 130/178 (73%)
Query: 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNV 60
MQEGLAH+ LV SMT+TR+++E +IPRK + ++ AL +F+E V+QA +H++F V
Sbjct: 142 MQEGLAHVCLVTPSMTLTRAKVEVNIPRKRKGNCSQHDRALERFYEQVVQAIQRHINFEV 201
Query: 61 VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPN 120
V+C ++ASPGF ++QF ++ +A + + ++EN+S+ + VH SSG+K+SL+E L P
Sbjct: 202 VKCVLVASPGFVREQFCDYMFQQAVKTDNKVLLENRSKFLQVHASSGHKYSLKEALCDPT 261
Query: 121 VMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
V + + DTKAA EV+AL DF+ ML ++P RA YG K VE A+E +A+ TLLI+D+LFR
Sbjct: 262 VASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVERANEALAIDTLLISDELFR 319
>sp|P50444|YNU6_CAEEL Uncharacterized protein R74.6 OS=Caenorhabditis elegans GN=R74.6
PE=3 SV=1
Length = 381
Score = 166 bits (420), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 120/178 (67%)
Query: 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNV 60
+ EGLA++ L+ +MT+TR++I+ +IPRK + +E L KF+E V AF++HV+ V
Sbjct: 142 LHEGLANVCLITPAMTLTRAKIDMTIPRKRKGFTSQHEKGLEKFYEAVSTAFMRHVNLQV 201
Query: 61 VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPN 120
V+C ++AS GF KD F +HL+ A+ + E +++ +L H+SSG+KH+L+EVL+ P
Sbjct: 202 VKCVIVASRGFVKDAFMQHLIAHADANGKKFTTEQRAKFMLTHSSSGFKHALKEVLETPQ 261
Query: 121 VMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
V + DTKA EV+AL F +++ +P RA YG HV A++ +A++TLL+ D LFR
Sbjct: 262 VALRLADTKAQGEVKALNQFLELMSTEPDRAFYGFNHVNRANQELAIETLLVADSLFR 319
>sp|Q9USL5|DOM34_SCHPO Protein dom34 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=dom34 PE=1 SV=1
Length = 390
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 111/178 (62%)
Query: 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNV 60
+ EGLA+I L+ MTI R RI+ IPRK + Y+ L+KF+++V Q+ DF+
Sbjct: 142 LDEGLANICLITDYMTILRQRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDK 201
Query: 61 VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPN 120
++ ++ASPGF + ++ A + L+ I+++K++ +++H+S+G+ HSL E+L P
Sbjct: 202 LKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTGHIHSLNEILKDPA 261
Query: 121 VMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
V + + DTK QE++ L F++++ D +A YGP HV A E A+ LLI+D LFR
Sbjct: 262 VESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSLFR 319
>sp|P33309|DOM34_YEAST Protein DOM34 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=DOM34 PE=1 SV=2
Length = 386
Score = 109 bits (273), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 94/175 (53%), Gaps = 1/175 (0%)
Query: 1 MQEGLAHILLVGRSMTITRSRIETSIPRKH-GPAIAGYESALNKFFENVLQAFLKHVDFN 59
+QEG+AH+ LV S TI + +IE S+P+K + ++ KF++ + A K ++F+
Sbjct: 147 LQEGIAHVCLVTSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAIYSAMKKDLNFD 206
Query: 60 VVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAP 119
++ ++ SPGF + AE + I++NK + H S+GY + EVL P
Sbjct: 207 KLKTIILCSPGFYAKILMDKIFQYAEEEHNKKILDNKGMFFIAHCSTGYLQGINEVLKNP 266
Query: 120 NVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITD 174
+ ++DTK ++E+ + +F L D +A YG K V A E A+ LL+TD
Sbjct: 267 LYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYLLLTD 321
>sp|O27679|PELO_METTH Protein pelota homolog OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=pelA PE=3 SV=2
Length = 353
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 43 KFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILV 102
+F+E+++++ K+ D + +IA PGF K F+ +L+ + P I K+ +L
Sbjct: 183 EFYESIVESLQKYGDLETI---IIAGPGFYKSDFYDYLM------ERYPEIAKKA--VLE 231
Query: 103 HTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAH 162
+T +G + + EVL V + + + A E++ + +F L DP YG V A
Sbjct: 232 NTGTGGRAGISEVLRKGTVERVSSEKRIASEIRNVNEFLEKLARDPDSVVYGKVEVMDAI 291
Query: 163 ERMAVQTLLITD 174
AV+ LL+ D
Sbjct: 292 NMGAVEKLLVLD 303
>sp|A3DMX7|PELO_STAMF Protein pelota homolog OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=pelA PE=3 SV=1
Length = 356
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 15/157 (9%)
Query: 24 TSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLE 83
++IP K P + ++ L K+ ++ + L +++ V VIASPG +
Sbjct: 158 SNIPGKREPVL--FQKGLEKYLSSIAEKILDYINKFQVDIVVIASPG------------D 203
Query: 84 AERRQLRPIIENKSRIILVHTSS-GYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFN 142
++R R I E K I+ T S G + +RE+L +V +K+T + + L +F
Sbjct: 204 LQKRVARIIKEKKPVNIITDTVSIGGQSGIRELLRRDSVREAVKETNIIKAQRILDEFHK 263
Query: 143 MLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRL 179
L+ +P YG VE A + AV LL++++L R+
Sbjct: 264 NLSKNPDMVAYGIDDVEYAVKYNAVDKLLVSEELLRI 300
>sp|C5A5T8|PELO_THEGJ Protein pelota homolog OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=pelA PE=3 SV=1
Length = 357
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 38 ESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKS 97
ES +FF ++ + + ++ + A++A PGF K+ FH+ L R+ P E
Sbjct: 176 ESEEKRFFHDLAKTMAELMEREKIEKAIVAGPGFVKEDFHKFL------RENYP--ELAK 227
Query: 98 RIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKH 157
++++ TS + + EV+ V + + + A+EVQ ++ + + A YG +
Sbjct: 228 KVVIEDTSVTGRTGIYEVIKRGTVDRVYHENRVAKEVQLVEKVLEHVARNTGLATYGLRE 287
Query: 158 VEVAHERMAVQTLLITDDLFR 178
VE A AV+TLL+ D+L +
Sbjct: 288 VEEAVNYGAVETLLVLDELLK 308
>sp|Q9V0V3|PELO_PYRAB Protein pelota homolog OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=pelA PE=3 SV=1
Length = 356
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 38 ESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKS 97
E KFF +V + ++ V+ ++A PGF K+ F+ L R+ P E
Sbjct: 176 EDEEKKFFHDVAKTIKDLIERENVQKVIVAGPGFYKENFYGFL------RENYP--ELAG 227
Query: 98 RIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKH 157
+++L TS G + + EV+ V + +T+ AQE++ ++ + D YG K
Sbjct: 228 KVVLDDTSMGGRVGVYEVIKRGTVDKVYTETRVAQEIKLVEKVIERIAKDEP-VAYGLKD 286
Query: 158 VEVAHERMAVQTLLITDDLFR 178
VE A AV TLL+ D+L +
Sbjct: 287 VEEAVNYGAVDTLLVLDELLK 307
>sp|Q2NFD9|PELO_METST Protein pelota homolog OS=Methanosphaera stadtmanae (strain DSM
3091) GN=pelA PE=3 SV=1
Length = 351
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 41 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRII 100
+N+++E++ + + D + + +I PGFTK+ ++ +L E +L ++I
Sbjct: 180 VNEYYEDITKTLTQQKDIDKL---IIIGPGFTKNGYYNYL--EENYPKL------AKKVI 228
Query: 101 LVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEV 160
L T +G ++EVL + ++ KD K A+E + + YG K V
Sbjct: 229 LESTGAGGHAGIQEVLKNGLIESLSKDAKIAKEAALVNKLLEQIGKSSNTVTYGKKQVIT 288
Query: 161 AHERMAVQTLLITDDLFR 178
A AV+ LL+ +DL R
Sbjct: 289 ASNMGAVEKLLVLEDLVR 306
>sp|Q5JIB9|PELO_PYRKO Protein pelota homolog OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=pelA PE=3 SV=1
Length = 357
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 8/141 (5%)
Query: 38 ESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKS 97
ES KFF +V + + + V A++A PGF K+ F++ L ++ P E
Sbjct: 176 ESEEMKFFHDVAKTMEEVMKRENVEKAIVAGPGFVKEDFYKFL------KEKYP--ELAK 227
Query: 98 RIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKH 157
++++ TS + + EV+ V + ++ + A+EVQ ++ + + YG K
Sbjct: 228 KVVIEDTSVTGRTGIYEVIKRGVVDRVYQENRVAKEVQLVEKVLENIARNNGLVAYGLKE 287
Query: 158 VEVAHERMAVQTLLITDDLFR 178
VE A AV+TLL+ D+L +
Sbjct: 288 VEEAVNYGAVETLLVLDELLK 308
>sp|B6YUV3|PELO_THEON Protein pelota homolog OS=Thermococcus onnurineus (strain NA1)
GN=pelA PE=3 SV=1
Length = 357
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 8/141 (5%)
Query: 38 ESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKS 97
E+ +FF +V + + ++ V A++A PGF K+ F++ L R+ P E
Sbjct: 176 EAEEKRFFHDVAKTMEEIMNREKVEKAIVAGPGFVKEDFYKFL------RENYP--ELVK 227
Query: 98 RIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKH 157
++++ TS + + EV+ V + + + A+EVQ ++ + + YG +
Sbjct: 228 KVVIEDTSVTGRTGIYEVIKRGTVDRVYHENRVAKEVQLIEKVLENIAKNNGLVAYGLRE 287
Query: 158 VEVAHERMAVQTLLITDDLFR 178
VE A AV+TLL+ D+L +
Sbjct: 288 VEEAANYGAVETLLVLDELLK 308
>sp|Q5JGK6|RF1_PYRKO Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=prf1 PE=3
SV=1
Length = 415
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 10/134 (7%)
Query: 41 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRII 100
+ + E+ +AFL ++ +R +I PG TK++F L E R K I
Sbjct: 196 MKRIGEHANKAFLPLLEKGELRGIIIGGPGPTKEEFVEGDYLHHELR--------KKVIG 247
Query: 101 LVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEV 160
+V S ++ LRE+++ + +++KD +A +E Q +++FF L D YG K V
Sbjct: 248 VVDISYHGEYGLRELVEKAS--DILKDHEAVKERQLIQEFFKHLVKDTGMITYGEKEVRK 305
Query: 161 AHERMAVQTLLITD 174
A E AV LLI++
Sbjct: 306 ALELGAVDKLLISE 319
>sp|O59148|PELO_PYRHO Protein pelota homolog OS=Pyrococcus horikoshii (strain ATCC 700860
/ DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pelA
PE=3 SV=1
Length = 356
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 9/141 (6%)
Query: 38 ESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKS 97
E KFF +V + + ++ A++A PGF K+ F++ L ++ P + S
Sbjct: 176 EDEERKFFHDVAKTMKDVMSRENIQRAIVAGPGFYKEDFYKFL------KENYPDL--AS 227
Query: 98 RIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKH 157
+I+L TS G + + EV+ V + +++ A E++ ++ + D YG K
Sbjct: 228 KIVLDDTSMGGRVGIYEVIKRGTVDKVYSESRIANEIKLVEKVIERIAKDEP-VAYGMKE 286
Query: 158 VEVAHERMAVQTLLITDDLFR 178
VE A AV+ LL+ D+L +
Sbjct: 287 VEEAVNYGAVEILLVLDELLK 307
>sp|A5UKW7|PELO_METS3 Protein pelota homolog OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=pelA PE=3 SV=1
Length = 353
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 11/135 (8%)
Query: 40 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 99
A+ +F+E V+++ K F+ ++ V+A PGF K+ F+ ++ + + + IIE+
Sbjct: 180 AIAQFYEKVIESVNK---FHDIQNIVVAGPGFVKNDFYDYIKNKHKDLADKAIIES---- 232
Query: 100 ILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVE 159
T SG + + EVL V + + + A E+ A+ + + + ++ YG K
Sbjct: 233 ----TGSGGRVGIHEVLKKGTVEKLTVENRVASEMVAINNLLEEIGKNSSKVAYGEKETV 288
Query: 160 VAHERMAVQTLLITD 174
A AV+ LL+ D
Sbjct: 289 KAINLGAVKQLLVLD 303
>sp|B9LQI7|PELO_HALLT Protein pelota homolog OS=Halorubrum lacusprofundi (strain ATCC
49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=pelA PE=3 SV=1
Length = 355
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 37 YESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENK 96
Y + F + +A L H+D + V ++A PGFTK ++ E R L
Sbjct: 172 YSRPREELFAELGEA-LAHLDADAV---ILAGPGFTKQDALDYIT--EEYRDL------A 219
Query: 97 SRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPK 156
RI V TS+ + EVL V + K+T+ ++E + D + +A YGP+
Sbjct: 220 DRITTVDTSAAGDRGVHEVLKRGAVDEVQKETRISKEATLIDDLTAEIAQ-GAKATYGPE 278
Query: 157 HVEVAHERMAVQTLLITDDLFR 178
V A E A++TLL+ DD R
Sbjct: 279 DVAEAAEFGAIETLLVVDDRLR 300
>sp|Q0W6H4|PELO_UNCMA Protein pelota homolog OS=Uncultured methanogenic archaeon RC-I
GN=pelA PE=3 SV=1
Length = 357
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 12/184 (6%)
Query: 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNV 60
++EG A I + + SRI + K A A +FF V A LK+ D
Sbjct: 138 IEEGEAAIGYLRQYGIEEVSRIRQASSGKREGADARSVDGRGEFFGEVA-AQLKYAD--K 194
Query: 61 VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPN 120
V+ V+A PGF KD F + L R P + K +I+ TSS +EVL
Sbjct: 195 VQTIVVAGPGFIKDDFVKFL------RVNHPAVAQK--VIVEDTSSIGSSGFQEVLRRGA 246
Query: 121 VMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLV 180
+ + ++ + +E Q ++ + + D +A YG + A + AV+TLLI D+ R +
Sbjct: 247 IQRVAEENRITREAQLIEALLSEIAKD-GKATYGFAETKRAVDYGAVETLLIADETLRGL 305
Query: 181 CSKS 184
K
Sbjct: 306 REKG 309
>sp|Q5V3G6|PELO_HALMA Protein pelota homolog OS=Haloarcula marismortui (strain ATCC 43049
/ DSM 3752 / JCM 8966 / VKM B-1809) GN=pelA PE=3 SV=1
Length = 355
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 19/179 (10%)
Query: 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNV 60
++EG AH+ V + T R+ I ++ + Y + F+ L + LK D
Sbjct: 142 VEEGEAHVHTVAQYGTEERATITSTTGKGE------YARPRKELFDE-LASVLKRQD--- 191
Query: 61 VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPN 120
V ++A PGFTK H E I + +I +V TS+ + EVL
Sbjct: 192 VDAYILAGPGFTKQDALDHFQDE--------IPDIAEQITVVDTSAVGDRGVHEVLKRGA 243
Query: 121 VMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRL 179
V ++ + T+ A+E + + + + + YGP+ V A + A++TLL+ D+ RL
Sbjct: 244 VEDVQQQTRIAEEADYIDELMARIGS-GSEVAYGPEEVAKAADYGAIETLLVLDERLRL 301
>sp|Q3INN9|PELO_NATPD Protein pelota homolog OS=Natronomonas pharaonis (strain DSM 2160 /
ATCC 35678) GN=pelA PE=3 SV=1
Length = 355
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 19/178 (10%)
Query: 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNV 60
++EG AHI V + R+ I + + Y + ++ FE L A L+ +D
Sbjct: 142 VEEGQAHIHTVAQYGVEERASITGTTGKGE------YARSRDELFEE-LAAILRRLDAEA 194
Query: 61 VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPN 120
+ ++A PGFTK H+ A P E +I +V T+S + EVL
Sbjct: 195 I---ILAGPGFTKQDALEHIEDNA------P--EAAEKIQVVDTASVGDRGVHEVLKRGA 243
Query: 121 VMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
V + +T+ ++E + + + + + +A YG V A E A++TLLI D+ R
Sbjct: 244 VDRIQTETRVSKEAELIDELMERI-GEGEKAAYGVDEVAEAAEFGAIETLLILDERLR 300
>sp|A7I7Y6|PELO_METB6 Protein pelota homolog OS=Methanoregula boonei (strain 6A8) GN=pelA
PE=3 SV=1
Length = 341
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 14/156 (8%)
Query: 23 ETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLL 82
E+ I G G FF+ V+++ + V VIA PGF K+ F R+
Sbjct: 154 ESVITITAGSGKGGETETRTGFFDTVIKSIAE-----VSGPMVIAGPGFVKEDFVRY--- 205
Query: 83 EAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFN 142
A+ + P R I+ T + ++++V+ A + +I D + ++EV+ + +
Sbjct: 206 -AKNKNCAP----AGRAIVAETRRIGRGAVQDVIGAGTLEKLIGDLQLSREVRLMDEVLL 260
Query: 143 MLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
++ D A YG K V A E AV +L+ D L R
Sbjct: 261 RISRDGAIA-YGYKDVATAIEYGAVDEVLLADSLLR 295
>sp|B6YU52|RF1_THEON Peptide chain release factor subunit 1 OS=Thermococcus onnurineus
(strain NA1) GN=prf1 PE=3 SV=1
Length = 415
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 10/134 (7%)
Query: 41 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRII 100
+ + E+ +AFL ++ ++ +I PG TK++F L E R K I
Sbjct: 196 MKRIAEHAAKAFLPLLEKGELKGIIIGGPGPTKEEFVDGDYLHHELR--------KKVIG 247
Query: 101 LVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEV 160
+V S ++ LRE+++ + +++ + +A +E + ++DFF L D YG + V
Sbjct: 248 VVDISYHGEYGLRELVEKAS--DILSEHEAVKERKLIQDFFRHLVKDTGLITYGEREVRK 305
Query: 161 AHERMAVQTLLITD 174
A E AV TLLI++
Sbjct: 306 ALELGAVDTLLISE 319
>sp|Q8TZ98|PELO_METKA Protein pelota homolog OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=pelA PE=3 SV=1
Length = 353
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 20 SRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRH 79
+R+ ++P K G + + KFF + + + V V+ PGF K F
Sbjct: 155 ARVRHNVPGKRG---GDRRAEMRKFFHRLADEIERIAEEEGVEHIVVGGPGFVKSDFAEF 211
Query: 80 LLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKD 139
L E R + +E+ T S + L E++ V +++++ A+EV+ L++
Sbjct: 212 L---REERDIPAHVED--------TGSAGEAGLIEMIRRGAVERAVEESRVAEEVKHLEE 260
Query: 140 FFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
F + + YG + A E A+ LL+ D+ FR
Sbjct: 261 VFKRIGKGDDKVAYGVRECLKAAEFGAIDVLLVADEKFR 299
>sp|A0B6U3|PELO_METTP Protein pelota homolog OS=Methanosaeta thermophila (strain DSM 6194
/ PT) GN=pelA PE=3 SV=2
Length = 347
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 52 FLKHVDFNVVRCA------VIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTS 105
FLK V + A V+A PGFTK+ + ++EA L R+ + S
Sbjct: 175 FLKEVADQIANSAGDDAYVVLAGPGFTKEDLRK--VMEARYPDL------LKRLTMDDAS 226
Query: 106 SGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERM 165
S + +EVL V +++ ++ ++E + + D + D RA YG + V A
Sbjct: 227 STGRSGFQEVLRRGTVDRIVEASRISRETRLMDDLMKEIATD-GRAAYGIREVREAANYG 285
Query: 166 AVQTLLITDDLFR 178
A++TL+I D L R
Sbjct: 286 AIETLMIVDQLVR 298
>sp|A5ULL8|RF1_METS3 Peptide chain release factor subunit 1 OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=prf1 PE=3
SV=1
Length = 412
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 65 VIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNM 124
+I PGFTK++F + L E I++K I V TS + +REV+D ++
Sbjct: 219 IIGGPGFTKEEFVKGDYLNYE-------IKDKI-IATVDTSYTGEFGIREVIDKS--ADI 268
Query: 125 IKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176
+ D QE + ++ F + L D A YG + V AV TLL+++DL
Sbjct: 269 LNDLDVMQEKKVVQKFLHELVKDKGLASYGEREVRTNLIMGAVDTLLLSEDL 320
>sp|Q8PVZ0|PELO_METMA Protein pelota homolog OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=pelA
PE=3 SV=1
Length = 350
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 42 NKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIIL 101
N+FF +++ V + VIA PGFTK+ F ++ + + E+ S I +
Sbjct: 173 NEFFREIVEQLRHAVPEDA--SIVIAGPGFTKEDFLKYFNETESEMASKALTEDTSMIGM 230
Query: 102 VHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVA 161
SG++ EVL V ++++++ A+E ++D ++ D +A YG V+ A
Sbjct: 231 ----SGFQ----EVLRRGAVDRIMQESRIARESSLMEDLIREISMDG-KAAYGFADVKNA 281
Query: 162 HERMAVQTLLITDDLFR 178
AV+TLLI D+ R
Sbjct: 282 LGYGAVETLLIADETLR 298
>sp|Q46C69|PELO_METBF Protein pelota homolog OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=pelA PE=3 SV=1
Length = 350
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 42 NKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIIL 101
N+FF V++ V VIA PGFTK+ F ++ + +IE+ S I +
Sbjct: 173 NEFFREVVEQLRHAVPEEA--SIVIAGPGFTKEDFIKYFQETEPAMASKALIEDTSMIGM 230
Query: 102 VHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVA 161
SG++ EVL V ++++++ A+E ++D ++ D +A YG V+ A
Sbjct: 231 ----SGFQ----EVLRRGAVDRIMQESRIARESALMEDLIREISMDG-KAAYGLGDVKNA 281
Query: 162 HERMAVQTLLITDDLFR 178
AV+TLL+ D+ R
Sbjct: 282 LNFGAVETLLVADETLR 298
>sp|Q8U150|PELO_PYRFU Protein pelota homolog OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=pelA PE=3 SV=1
Length = 356
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 43 KFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILV 102
KFF V ++ + + + A++A PGF K+ F L R+ P E +++
Sbjct: 181 KFFHEVAKSMEELMKRENIEKAIVAGPGFYKENFVNFL------RENYP--ELAKKVVTD 232
Query: 103 HTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAH 162
TS G + + EV+ V + +++ ++E++ ++ + + YG K VE A
Sbjct: 233 DTSMGGRTGIYEVIKRGTVDKVYTESRISKEIKLVEKVIEEIAKNGL-VAYGLKEVEEAT 291
Query: 163 ERMAVQTLLITDDLFR 178
AV+TL++ D L +
Sbjct: 292 NYGAVETLIVLDSLLK 307
>sp|O26964|RF1_METTH Peptide chain release factor subunit 1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=prf1 PE=3 SV=1
Length = 407
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 13/136 (9%)
Query: 41 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRII 100
L + E++ +AFL+ D + ++ PG TK++F L E + K I
Sbjct: 198 LKRIGEHMNEAFLQIDDLKGI---ILGGPGHTKEEFLNGDYLHHELK--------KKVIT 246
Query: 101 LVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEV 160
V TS + +REV+D M+++ + +E + ++ F L N+ A YG + V
Sbjct: 247 TVDTSYTGEFGIREVID--KSMDVLSEIDVMREKKLVQRFLRELINEDGLASYGEREVRQ 304
Query: 161 AHERMAVQTLLITDDL 176
+ AV+ LL+++DL
Sbjct: 305 HLQMGAVEVLLLSEDL 320
>sp|Q8TSZ1|PELO_METAC Protein pelota homolog OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=pelA PE=3 SV=1
Length = 350
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
Query: 65 VIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNM 124
VIA PGFTK+ F ++ + + E+ S I + SG++ EVL V +
Sbjct: 194 VIAGPGFTKEDFLKYFHETEPEMASKALTEDTSMIGM----SGFQ----EVLRRGAVDRI 245
Query: 125 IKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
+++++ A+E ++D ++ D +A YG V+ A + AV+TLLI D+ R
Sbjct: 246 MQESRIARESSLMEDLLREISMD-GKAAYGFADVKNALKYGAVETLLIADETLR 298
>sp|Q9HPR5|PELO_HALSA Protein pelota homolog OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=pelA PE=3 SV=1
Length = 357
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 65 VIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNM 124
++A PGFTK H+ E P ++ I +V TS+ + EVL V ++
Sbjct: 197 ILAGPGFTKQDALDHITEEY------PDLQET--ITMVDTSAVGGRGVHEVLKRGAVEDV 248
Query: 125 IKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRL 179
++T+ A+E + + + + D +A YG V+ A E AV+ LLI D+ RL
Sbjct: 249 QEETRIAEESELIDELTTQMATDG-KAAYGIDEVQKAVEFGAVEDLLILDERLRL 302
>sp|B0R5R9|PELO_HALS3 Protein pelota homolog OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=pelA PE=3 SV=1
Length = 357
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 9/115 (7%)
Query: 65 VIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNM 124
++A PGFTK H+ E P ++ I +V TS+ + EVL V ++
Sbjct: 197 ILAGPGFTKQDALDHITEEY------PDLQET--ITMVDTSAVGGRGVHEVLKRGAVEDV 248
Query: 125 IKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRL 179
++T+ A+E + + + + D +A YG V+ A E AV+ LLI D+ RL
Sbjct: 249 QEETRIAEESELIDELTTQMATDG-KAAYGIDEVQKAVEFGAVEDLLILDERLRL 302
>sp|Q12W71|PELO_METBU Protein pelota homolog OS=Methanococcoides burtonii (strain DSM
6242) GN=pelA PE=3 SV=1
Length = 347
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 44 FFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVH 103
FF +L L H + V++ PGFTKD F ++ + ++E+ S I +
Sbjct: 175 FFSTILDQ-LTHA-MSGTESVVVSGPGFTKDDFMKYASSKNSDLVAGILVEDTSSIGM-- 230
Query: 104 TSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHE 163
SG++ EVL V ++++++ A+E + + D + YG V+ A +
Sbjct: 231 --SGFQ----EVLRRGAVDRIMEESRIARESSLMDSLLKEIALDG-KVAYGMDEVKQAID 283
Query: 164 RMAVQTLLITDDLFRL 179
AV+TLL+ D++ RL
Sbjct: 284 FGAVETLLVADEMLRL 299
>sp|Q8TUM4|RF11_METAC Peptide chain release factor subunit 1-1 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=prf11 PE=3 SV=1
Length = 415
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 21/178 (11%)
Query: 9 LLVGRSMTITRSRIETSIP---RKHGPAIAGYES----ALNKFFENVLQA---FLKHVDF 58
LLVG+ + R+ + +++P RK G + ++ A++ F++ + A VD
Sbjct: 155 LLVGKRIQAFRN-LTSTVPGKQRKGGQSAHRFQQLRLIAIHDFYKRIGDAASEIFMAVDH 213
Query: 59 NVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDA 118
++ +I P TK++F+ L E + K + L T+ + L E+++A
Sbjct: 214 KDLKGVLIGGPSPTKEEFYGGEFLHHELQ--------KKILGLFDTAYTDESGLSELVNA 265
Query: 119 PNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176
++D + + A++DFF L D + YG V E AV LL+++DL
Sbjct: 266 AG--EKLQDLELMGQKNAVRDFFKELIADSGKVAYGETQVRANLEINAVDVLLLSEDL 321
>sp|C5ZZZ5|RF1_THESM Peptide chain release factor subunit 1 OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1
Length = 415
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 12/140 (8%)
Query: 41 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRII 100
+ + E+ FL ++ + ++ +I PG TK++F L E R+ RI+
Sbjct: 196 MKRIGEHASSVFLPLLEKDELKGIIIGGPGPTKEEFVEGEYLHHELRK---------RIL 246
Query: 101 -LVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVE 159
+V S ++ LRE+++ + +++++ +A +E + ++ FF L D YG K V
Sbjct: 247 GVVDISYHGEYGLRELVEKAS--DILREHEAVKERKLVQQFFKHLVKDTGLITYGEKEVR 304
Query: 160 VAHERMAVQTLLITDDLFRL 179
A E AV LL+++ R+
Sbjct: 305 KALELGAVDILLLSEGYDRV 324
>sp|A8A935|PELO_IGNH4 Protein pelota homolog OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=pelA PE=3 SV=1
Length = 346
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 12/150 (8%)
Query: 28 RKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERR 87
R G G E+A + + + + + + V+ PGF KD+ + L
Sbjct: 157 RLPGKGDEGREAATERKINELAKRVSEELKLRNLDHVVVVGPGFLKDKVAQRL------- 209
Query: 88 QLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTND 147
E ++ + SSG + + E + ++ + K+ ++ + ++AL++F +
Sbjct: 210 -----SEEGFKVKVDSASSGGRAGVLEAIRKGSLRGVAKELESIKALEALEEFVKHVARG 264
Query: 148 PTRACYGPKHVEVAHERMAVQTLLITDDLF 177
A YG A + AV+TL+I+DDL
Sbjct: 265 DGYALYGVDDCMTAAQANAVKTLIISDDLL 294
>sp|P96026|PELO_SULSO Protein pelota homolog OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=pelA PE=1 SV=1
Length = 344
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 49 LQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGY 108
L ++K D + + ++A PGF K++ + ++ I++NK +I + SS
Sbjct: 177 LAEYVKQYDPDAI---LLAGPGFFKEEVSK---------KVNAILKNK-KIYIDSVSSAT 223
Query: 109 KHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQ 168
+ L EVL + ++ D + A + ++ +L P YG + V+ A E AV+
Sbjct: 224 RAGLHEVLKRDIIDKIMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVE 283
Query: 169 TLLITDDLF 177
T+L+ +DL
Sbjct: 284 TVLVIEDLL 292
>sp|A6UUY1|PELO_META3 Protein pelota homolog OS=Methanococcus aeolicus (strain Nankai-3 /
ATCC BAA-1280) GN=pelA PE=3 SV=1
Length = 348
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 65 VIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNM 124
++A PGFTK+ F ++L E + L+ R++ T+ + L EVL + V +
Sbjct: 196 LVAGPGFTKNNFQKYLS-EKHKDMLQ-------RVVFESTNHTGRLGLAEVLKSGIVDRI 247
Query: 125 IKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
+ + ++E Q + ++ A YG V+ A A++TLLITD+ R
Sbjct: 248 YGEARLSKETQLVNKLLEEISKKGL-AVYGVDDVKNALNYSAIETLLITDEFLR 300
>sp|Q8PX75|RF1_METMA Peptide chain release factor subunit 1 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=prf1 PE=1 SV=1
Length = 415
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 21/178 (11%)
Query: 9 LLVGRSMTITRSRIETSIP---RKHGPAIAGYES----ALNKFFENVLQA---FLKHVDF 58
LLVG+ + R+ + +++P RK G + ++ A++ F++ + A VD
Sbjct: 155 LLVGKRIQPFRN-LTSTVPGKQRKGGQSAHRFQQLRLIAIHDFYKRIGDAASEVFMAVDH 213
Query: 59 NVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDA 118
++ +I P TK++FH L E K + L T+ + L E+++A
Sbjct: 214 KDLKGVLIGGPSPTKEEFHAGEFLHHELM--------KKILGLFDTAYTDESGLSELVNA 265
Query: 119 PNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176
++D + + A++DFF L D + YG V E +V LL+++DL
Sbjct: 266 AG--EKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDL 321
>sp|Q4JCI0|PELO_SULAC Protein pelota homolog OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=pelA PE=3 SV=1
Length = 342
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Query: 39 SALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSR 98
+N+ E + + V V +IA PG KD ++ + +Q I+NK
Sbjct: 164 DVVNENIEEMANEIISFVKLTGVNVIIIAGPGPFKDMVNQKI------KQ----IDNKLI 213
Query: 99 IILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHV 158
+ + SS + L E+L + + ++ + AQ+++ L+ L + YG + +
Sbjct: 214 VYVDSVSSASRAGLNELLRRDIIDQVYREFEIAQQLKILESIMENLAKNTGLVVYGIEDI 273
Query: 159 EVAHERMAVQTLLITDD 175
+ A+E AV LLIT+D
Sbjct: 274 KKANELGAVDKLLITED 290
>sp|B8D691|PELO_DESK1 Protein pelota homolog OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=pelA PE=3 SV=1
Length = 356
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%)
Query: 20 SRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRH 79
S I++ +P K +E L+++ V A + + +IA PG K++ +
Sbjct: 153 SEIQSDLPGKM--YRVEHEEILDEYLSKVASALNNVIQQEEIDAVIIAGPGDLKNKLGEN 210
Query: 80 LLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKD 139
+ RR +N+ + L TS+G + E+L V ++ D + + +++
Sbjct: 211 I-----RR------DNRKHVYLDTTSTGGCQGISELLGRDVVKQVVGDLSIVKAKEVVEE 259
Query: 140 FFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLF 177
F ++ DP YG V A AV +++ DL
Sbjct: 260 FKRLIIKDPQLVAYGVDDVYGAVVYAAVSRIVVAGDLL 297
>sp|Q57638|PELO_METJA Protein pelota homolog OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=pelA PE=3 SV=1
Length = 347
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 65 VIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNM 124
++A PGF K+ F+ + ++ +L K++I++ S+ + L EV+ + +
Sbjct: 197 LVAGPGFAKNSFYN--FISSQYPEL------KNKIVVESISTTSRAGLNEVIKRGIINRI 248
Query: 125 IKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFR 178
+++ A+E Q ++ + A YG V+ A E A+ TLL++D L R
Sbjct: 249 YAESRVAKETQLIEKLLEEIAKKGL-AVYGIDEVKKALEYSAIDTLLVSDSLVR 301
>sp|O59264|RF1_PYRHO Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=prf1 PE=3 SV=1
Length = 417
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 41 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRII 100
+ + E+ +AFL ++ ++ +I PG TK++F L E + K +
Sbjct: 199 MKRIGEHANRAFLPLLEKGELKGIIIGGPGPTKEEFVEGEYLHHELK--------KKILG 250
Query: 101 LVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEV 160
+V S ++ LRE+++ + ++++D + +E + + +F + D A YG + V
Sbjct: 251 VVDISYHGEYGLRELVEKAS--DILRDHEVIREKKLVNEFLKHVVKDTGLATYGEREVRR 308
Query: 161 AHERMAVQTLLITD 174
A E AV LLI++
Sbjct: 309 ALEIGAVDVLLISE 322
>sp|Q58239|RF1_METJA Peptide chain release factor subunit 1 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=prf1 PE=3 SV=2
Length = 421
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 33/185 (17%)
Query: 9 LLVGRSMTITRSRIETSIPRKHGPAIAGYESA----------LNKFFENVLQA----FLK 54
L+ GR++ I + ++ + +P G AG +SA ++F + V Q FL
Sbjct: 156 LVKGRNINILK-KLTSGVP---GKFKAGGQSARRLERLIDLAAHEFLQRVGQKANEQFLP 211
Query: 55 HVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLRE 114
+ +R ++ PG TK++F L E L+ I+ + L +T + +RE
Sbjct: 212 LLQEKKLRGILVGGPGHTKNEFVEGDYLHHE---LKKIVLD--TFDLCYTE---EFGIRE 263
Query: 115 VLD--APNVMNMIKDTKAAQEVQALKDFFN-MLTNDPTRACYGPKHVEVAHERMAVQTLL 171
+L+ AP ++KD + +E +A++ F ++ D ACYG K V A AV TL+
Sbjct: 264 LLEKAAP----LLKDVELMKEREAVQRFLKELIKEDGGLACYGEKEVLEALMMGAVDTLI 319
Query: 172 ITDDL 176
++++L
Sbjct: 320 VSEEL 324
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,158,801
Number of Sequences: 539616
Number of extensions: 2339612
Number of successful extensions: 8055
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 7961
Number of HSP's gapped (non-prelim): 104
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)