Query 030017
Match_columns 184
No_of_seqs 104 out of 566
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:13:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2869 Meiotic cell division 100.0 4.5E-48 9.8E-53 325.0 12.5 183 1-183 142-324 (379)
2 TIGR00111 pelota probable tran 100.0 3.1E-43 6.7E-48 305.2 19.8 164 1-177 141-304 (351)
3 COG1537 PelA Predicted RNA-bin 100.0 1.7E-41 3.7E-46 289.2 18.2 167 1-183 139-305 (352)
4 PRK04011 peptide chain release 100.0 1.3E-37 2.9E-42 274.7 19.2 166 1-178 147-324 (411)
5 TIGR00108 eRF peptide chain re 100.0 2.6E-37 5.7E-42 272.6 19.2 165 1-177 143-319 (409)
6 TIGR03676 aRF1/eRF1 peptide ch 100.0 2.9E-37 6.3E-42 271.7 19.0 164 1-176 139-314 (403)
7 PF03464 eRF1_2: eRF1 domain 2 100.0 1.8E-30 4E-35 197.1 13.8 120 1-127 7-133 (133)
8 COG1503 eRF1 Peptide chain rel 100.0 3.9E-30 8.6E-35 223.8 10.5 165 1-177 146-322 (411)
9 KOG0688 Peptide chain release 99.9 5.5E-23 1.2E-27 173.5 3.1 165 1-177 147-323 (431)
10 PF03465 eRF1_3: eRF1 domain 3 99.6 3.2E-15 6.9E-20 110.6 5.5 52 130-181 1-52 (113)
11 PF10116 Host_attach: Protein 94.5 0.17 3.6E-06 38.2 6.7 91 2-92 7-122 (138)
12 PRK05583 ribosomal protein L7A 79.6 2.3 5E-05 30.8 3.1 33 144-176 11-43 (104)
13 PF08032 SpoU_sub_bind: RNA 2' 79.6 2.5 5.5E-05 27.9 3.2 24 152-175 2-26 (76)
14 PRK07714 hypothetical protein; 79.5 2.3 5E-05 30.3 3.1 32 145-176 13-44 (100)
15 PF01248 Ribosomal_L7Ae: Ribos 79.3 5.2 0.00011 27.8 4.9 30 148-177 13-42 (95)
16 PRK07283 hypothetical protein; 79.1 2.5 5.5E-05 30.1 3.2 33 144-176 12-44 (98)
17 TIGR03677 rpl7ae 50S ribosomal 78.6 5.3 0.00012 29.4 4.9 40 137-176 11-52 (117)
18 PF03485 Arg_tRNA_synt_N: Argi 77.7 2.9 6.3E-05 28.6 3.1 27 46-72 54-81 (85)
19 PRK09557 fructokinase; Reviewe 74.6 16 0.00035 30.6 7.4 70 39-112 223-292 (301)
20 PTZ00106 60S ribosomal protein 73.0 8.6 0.00019 28.0 4.7 39 137-176 13-51 (108)
21 PRK13602 putative ribosomal pr 73.0 7.6 0.00016 26.8 4.2 33 143-176 5-37 (82)
22 PRK04175 rpl7ae 50S ribosomal 72.7 11 0.00025 27.9 5.4 38 139-177 20-57 (122)
23 PRK05082 N-acetylmannosamine k 70.3 13 0.00027 31.1 5.8 48 39-86 212-259 (291)
24 PRK01018 50S ribosomal protein 68.3 14 0.00031 26.2 4.9 29 148-176 14-42 (99)
25 PRK13310 N-acetyl-D-glucosamin 66.4 31 0.00068 28.9 7.4 70 39-112 224-293 (303)
26 PRK13601 putative L7Ae-like ri 64.6 11 0.00025 26.0 3.6 29 148-176 6-34 (82)
27 COG1358 RPL8A Ribosomal protei 64.1 11 0.00023 28.0 3.6 30 147-176 24-53 (116)
28 PRK06683 hypothetical protein; 64.0 16 0.00034 25.2 4.3 30 147-176 8-37 (82)
29 PRK09190 hypothetical protein; 61.0 43 0.00094 27.5 7.0 32 145-176 106-137 (220)
30 COG1105 FruK Fructose-1-phosph 57.6 53 0.0011 28.5 7.3 63 38-119 113-178 (310)
31 PRK13600 putative ribosomal pr 56.4 21 0.00046 24.9 3.8 26 151-176 14-39 (84)
32 TIGR00744 ROK_glcA_fam ROK fam 53.4 58 0.0013 27.3 6.9 49 39-87 230-279 (318)
33 COG0018 ArgS Arginyl-tRNA synt 52.6 30 0.00065 32.5 5.3 28 46-73 57-85 (577)
34 TIGR01175 pilM type IV pilus a 47.5 1.5E+02 0.0033 25.1 8.6 26 60-85 282-307 (348)
35 PRK09698 D-allose kinase; Prov 47.2 76 0.0016 26.4 6.6 71 40-112 216-287 (302)
36 COG4972 PilM Tfp pilus assembl 46.0 40 0.00087 29.6 4.7 47 38-84 258-311 (354)
37 PRK15080 ethanolamine utilizat 45.5 58 0.0013 27.1 5.6 45 40-84 201-245 (267)
38 TIGR01917 gly_red_sel_B glycin 45.4 52 0.0011 29.8 5.5 54 64-118 79-146 (431)
39 COG1940 NagC Transcriptional r 45.3 61 0.0013 27.2 5.8 48 40-87 227-276 (314)
40 PF11215 DUF3010: Protein of u 44.8 1.4E+02 0.003 22.8 7.0 55 2-66 9-67 (138)
41 PF14213 DUF4325: Domain of un 44.7 37 0.0008 22.5 3.5 68 42-116 4-72 (74)
42 TIGR01351 adk adenylate kinase 41.5 1.2E+02 0.0026 23.9 6.6 21 63-83 2-22 (210)
43 PRK07511 enoyl-CoA hydratase; 40.9 80 0.0017 26.0 5.7 45 19-70 13-57 (260)
44 PRK03011 butyrate kinase; Prov 40.1 1.3E+02 0.0029 26.3 7.2 64 38-111 271-337 (358)
45 CHL00200 trpA tryptophan synth 38.9 1.8E+02 0.004 24.4 7.6 40 39-78 106-162 (263)
46 PRK06072 enoyl-CoA hydratase; 38.1 97 0.0021 25.3 5.8 45 19-70 10-54 (248)
47 PRK05980 enoyl-CoA hydratase; 37.6 91 0.002 25.6 5.5 45 19-70 13-57 (260)
48 COG1911 RPL30 Ribosomal protei 37.3 60 0.0013 23.4 3.7 31 146-176 15-45 (100)
49 KOG1205 Predicted dehydrogenas 37.0 84 0.0018 26.9 5.3 59 15-77 144-202 (282)
50 PRK05870 enoyl-CoA hydratase; 37.0 1.1E+02 0.0023 25.1 5.9 45 19-70 13-57 (249)
51 smart00732 YqgFc Likely ribonu 36.9 29 0.00062 23.7 2.1 26 43-72 38-63 (99)
52 PF00158 Sigma54_activat: Sigm 36.6 1.4E+02 0.0031 23.0 6.2 53 47-108 10-62 (168)
53 PRK07827 enoyl-CoA hydratase; 36.2 1.1E+02 0.0024 25.1 5.8 45 19-70 16-60 (260)
54 COG1088 RfbB dTDP-D-glucose 4, 35.6 72 0.0016 27.9 4.6 69 62-143 2-72 (340)
55 PRK06563 enoyl-CoA hydratase; 35.5 1.1E+02 0.0023 25.1 5.6 45 19-70 9-53 (255)
56 PRK05995 enoyl-CoA hydratase; 35.5 1.1E+02 0.0023 25.2 5.6 45 19-70 14-58 (262)
57 KOG3079 Uridylate kinase/adeny 34.7 88 0.0019 25.3 4.7 68 63-147 11-84 (195)
58 PF09290 AcetDehyd-dimer: Prok 34.4 76 0.0016 24.2 4.1 33 38-70 38-70 (137)
59 KOG4426 Arginyl-tRNA synthetas 34.3 64 0.0014 29.7 4.2 61 45-108 131-198 (656)
60 TIGR01918 various_sel_PB selen 34.2 99 0.0021 28.1 5.4 54 64-118 79-146 (431)
61 cd02131 PA_hNAALADL2_like PA_h 34.2 33 0.00071 26.7 2.1 20 156-175 55-74 (153)
62 PRK12408 glucokinase; Provisio 34.1 99 0.0021 26.6 5.4 34 39-73 250-284 (336)
63 PLN02664 enoyl-CoA hydratase/d 34.0 1.2E+02 0.0026 25.3 5.7 45 19-70 18-62 (275)
64 COG0420 SbcD DNA repair exonuc 33.6 85 0.0018 27.4 5.0 29 36-68 20-48 (390)
65 PRK06023 enoyl-CoA hydratase; 33.5 1.3E+02 0.0028 24.6 5.8 45 19-70 16-60 (251)
66 TIGR02529 EutJ ethanolamine ut 32.5 1.1E+02 0.0024 25.0 5.2 44 42-85 176-219 (239)
67 PRK07396 dihydroxynaphthoic ac 32.4 1.3E+02 0.0028 25.0 5.7 45 19-70 23-67 (273)
68 cd05564 PTS_IIB_chitobiose_lic 32.3 1.1E+02 0.0023 21.4 4.5 88 63-163 2-92 (96)
69 PRK08138 enoyl-CoA hydratase; 31.9 1.4E+02 0.003 24.6 5.8 45 19-70 18-62 (261)
70 PRK09674 enoyl-CoA hydratase-i 31.9 1.5E+02 0.0032 24.3 5.9 45 19-70 12-56 (255)
71 PRK06143 enoyl-CoA hydratase; 31.6 1.4E+02 0.0031 24.5 5.8 45 19-70 17-61 (256)
72 PRK07799 enoyl-CoA hydratase; 31.5 1.4E+02 0.003 24.6 5.6 45 19-70 15-59 (263)
73 TIGR03210 badI 2-ketocyclohexa 31.2 1.5E+02 0.0031 24.4 5.8 45 19-70 12-56 (256)
74 PRK06142 enoyl-CoA hydratase; 31.0 1.4E+02 0.0031 24.6 5.8 45 19-70 16-60 (272)
75 COG3172 NadR Predicted ATPase/ 31.0 95 0.0021 24.8 4.3 30 38-71 138-167 (187)
76 PF11104 PilM_2: Type IV pilus 30.6 68 0.0015 27.5 3.8 48 39-86 246-300 (340)
77 PF08671 SinI: Anti-repressor 30.6 50 0.0011 18.5 2.0 14 70-83 16-29 (30)
78 PRK07327 enoyl-CoA hydratase; 30.5 1.6E+02 0.0035 24.4 5.9 45 19-70 22-66 (268)
79 PRK00279 adk adenylate kinase; 30.4 2.7E+02 0.0059 21.9 7.6 22 62-83 2-23 (215)
80 PRK07260 enoyl-CoA hydratase; 30.0 1.5E+02 0.0033 24.2 5.7 45 19-70 12-56 (255)
81 PRK06144 enoyl-CoA hydratase; 30.0 1.6E+02 0.0035 24.3 5.8 45 19-70 18-62 (262)
82 TIGR01929 menB naphthoate synt 29.9 1.5E+02 0.0032 24.4 5.6 45 19-70 13-57 (259)
83 PRK05864 enoyl-CoA hydratase; 29.8 1.6E+02 0.0034 24.5 5.8 45 19-70 20-64 (276)
84 PLN02674 adenylate kinase 29.7 2.7E+02 0.0058 23.1 7.0 24 60-83 31-54 (244)
85 PRK07509 enoyl-CoA hydratase; 29.7 1.6E+02 0.0034 24.2 5.7 45 19-70 13-57 (262)
86 PRK07110 polyketide biosynthes 29.4 1.6E+02 0.0035 24.1 5.7 45 19-70 15-59 (249)
87 PRK08252 enoyl-CoA hydratase; 29.1 1.7E+02 0.0037 23.9 5.8 45 19-70 13-57 (254)
88 COG4079 Uncharacterized protei 29.0 2.7E+02 0.0059 23.6 6.8 27 60-86 118-144 (293)
89 PRK08259 enoyl-CoA hydratase; 29.0 1.8E+02 0.0038 23.9 5.9 45 19-70 13-57 (254)
90 COG1024 CaiD Enoyl-CoA hydrata 29.0 1.6E+02 0.0034 24.1 5.6 45 19-70 15-59 (257)
91 PF14639 YqgF: Holliday-juncti 29.0 2.6E+02 0.0057 21.3 7.0 41 43-87 50-90 (150)
92 KOG1681 Enoyl-CoA isomerase [L 28.9 2.4E+02 0.0053 23.8 6.5 45 18-70 31-76 (292)
93 PRK08140 enoyl-CoA hydratase; 28.9 1.8E+02 0.0039 23.8 6.0 44 19-70 14-57 (262)
94 PLN02844 oxidoreductase/ferric 28.5 1.2E+02 0.0026 29.4 5.3 39 45-84 660-698 (722)
95 PRK14101 bifunctional glucokin 28.4 3.1E+02 0.0067 25.8 8.0 73 38-112 246-324 (638)
96 PTZ00222 60S ribosomal protein 28.4 77 0.0017 26.8 3.5 31 146-176 128-158 (263)
97 PRK06494 enoyl-CoA hydratase; 28.1 1.8E+02 0.0039 23.9 5.8 45 19-70 14-58 (259)
98 PRK07659 enoyl-CoA hydratase; 28.0 1.8E+02 0.0039 23.9 5.8 44 19-70 16-59 (260)
99 PLN02600 enoyl-CoA hydratase 27.8 1.8E+02 0.0038 23.8 5.7 44 19-69 5-48 (251)
100 PRK05674 gamma-carboxygeranoyl 27.6 1.7E+02 0.0037 24.2 5.6 45 19-70 16-60 (265)
101 PRK09245 enoyl-CoA hydratase; 27.6 88 0.0019 25.8 3.9 46 19-70 13-58 (266)
102 PLN02591 tryptophan synthase 27.5 3.6E+02 0.0078 22.4 8.0 40 38-77 92-148 (250)
103 PLN02888 enoyl-CoA hydratase 27.5 1.9E+02 0.004 24.0 5.8 45 19-70 20-64 (265)
104 TIGR02280 PaaB1 phenylacetate 27.5 1.8E+02 0.004 23.8 5.7 43 20-70 10-52 (256)
105 PRK06127 enoyl-CoA hydratase; 27.1 1.8E+02 0.0038 24.1 5.6 45 19-70 21-65 (269)
106 PRK09120 p-hydroxycinnamoyl Co 27.0 1.7E+02 0.0037 24.4 5.5 45 19-70 18-62 (275)
107 PRK07468 enoyl-CoA hydratase; 26.9 1.9E+02 0.004 23.8 5.7 45 19-70 15-59 (262)
108 PF01715 IPPT: IPP transferase 26.9 82 0.0018 26.2 3.6 38 38-76 35-72 (253)
109 PF07355 GRDB: Glycine/sarcosi 26.9 1.7E+02 0.0037 25.8 5.6 53 64-117 83-149 (349)
110 PRK07657 enoyl-CoA hydratase; 26.9 1.9E+02 0.004 23.8 5.7 44 20-70 15-58 (260)
111 TIGR00853 pts-lac PTS system, 26.8 1.8E+02 0.0039 20.3 4.8 69 61-142 4-72 (95)
112 PF08030 NAD_binding_6: Ferric 26.8 93 0.002 22.9 3.6 18 62-79 137-154 (156)
113 PRK08258 enoyl-CoA hydratase; 26.7 2E+02 0.0043 23.9 5.9 45 19-70 27-71 (277)
114 PRK05862 enoyl-CoA hydratase; 26.4 2E+02 0.0044 23.5 5.8 45 19-70 14-58 (257)
115 PRK08321 naphthoate synthase; 26.3 1.8E+02 0.004 24.6 5.7 45 19-70 35-79 (302)
116 PRK08260 enoyl-CoA hydratase; 26.0 1.9E+02 0.0042 24.3 5.7 45 19-70 14-58 (296)
117 cd02121 PA_GCPII_like PA_GCPII 25.8 76 0.0017 26.1 3.1 20 156-175 86-105 (220)
118 PRK06210 enoyl-CoA hydratase; 25.8 2.1E+02 0.0046 23.6 5.8 45 19-70 16-60 (272)
119 PRK12478 enoyl-CoA hydratase; 25.7 2.1E+02 0.0045 24.3 5.9 45 19-70 15-59 (298)
120 PF00532 Peripla_BP_1: Peripla 25.2 3.1E+02 0.0067 22.6 6.8 56 60-120 56-118 (279)
121 PRK06190 enoyl-CoA hydratase; 25.2 2.2E+02 0.0048 23.5 5.9 45 19-70 14-58 (258)
122 PRK07854 enoyl-CoA hydratase; 25.1 2.1E+02 0.0046 23.3 5.7 44 19-70 10-53 (243)
123 PRK08139 enoyl-CoA hydratase; 25.1 2E+02 0.0043 23.8 5.5 45 19-70 21-65 (266)
124 PRK08272 enoyl-CoA hydratase; 25.0 2E+02 0.0043 24.3 5.6 45 19-70 20-64 (302)
125 PF07318 DUF1464: Protein of u 24.7 2.8E+02 0.0061 24.4 6.5 48 40-87 239-287 (343)
126 cd02128 PA_TfR PA_TfR: Proteas 23.8 84 0.0018 25.1 2.9 21 155-175 69-89 (183)
127 PRK08290 enoyl-CoA hydratase; 23.6 2.4E+02 0.0051 23.7 5.8 45 19-70 14-58 (288)
128 PRK08150 enoyl-CoA hydratase; 23.4 2.4E+02 0.0053 23.1 5.8 43 19-70 12-54 (255)
129 PRK00292 glk glucokinase; Prov 23.4 2.4E+02 0.0051 23.7 5.8 34 38-71 231-265 (316)
130 COG0159 TrpA Tryptophan syntha 23.2 2E+02 0.0044 24.4 5.2 69 37-119 107-192 (265)
131 PRK05809 3-hydroxybutyryl-CoA 23.0 2.5E+02 0.0055 22.9 5.8 45 19-70 14-58 (260)
132 PRK11423 methylmalonyl-CoA dec 22.9 2.5E+02 0.0054 23.1 5.7 43 19-69 14-56 (261)
133 KOG0477 DNA replication licens 22.8 65 0.0014 31.1 2.3 29 59-87 481-509 (854)
134 PF00408 PGM_PMM_IV: Phosphogl 22.6 1.4E+02 0.0031 19.4 3.5 34 10-52 39-72 (73)
135 PRK06688 enoyl-CoA hydratase; 22.4 2.6E+02 0.0057 22.7 5.8 45 19-70 15-59 (259)
136 PLN02286 arginine-tRNA ligase 21.9 81 0.0018 29.5 2.9 28 46-73 59-87 (576)
137 PTZ00365 60S ribosomal protein 21.8 66 0.0014 27.3 2.0 32 145-176 127-158 (266)
138 COG0062 Uncharacterized conser 21.3 1.1E+02 0.0024 24.8 3.2 32 39-70 27-59 (203)
139 PF01408 GFO_IDH_MocA: Oxidore 21.2 2.9E+02 0.0063 19.1 5.2 20 59-78 61-80 (120)
140 COG1086 Predicted nucleoside-d 21.1 3.4E+02 0.0074 25.8 6.6 103 59-175 273-377 (588)
141 PRK10439 enterobactin/ferric e 21.1 2.1E+02 0.0046 25.5 5.2 47 74-120 263-311 (411)
142 PRK06851 hypothetical protein; 20.8 1.7E+02 0.0037 25.9 4.5 43 40-89 201-243 (367)
143 PF00378 ECH: Enoyl-CoA hydrat 20.4 1.9E+02 0.0041 23.3 4.5 20 157-176 162-181 (245)
144 PRK03359 putative electron tra 20.4 1E+02 0.0022 25.9 2.8 32 150-181 59-96 (256)
145 PTZ00288 glucokinase 1; Provis 20.4 2.7E+02 0.0058 25.0 5.7 35 39-73 302-336 (405)
146 KOG1856 Transcription elongati 20.1 6.7E+02 0.015 26.0 8.7 77 3-85 614-691 (1299)
147 PF01990 ATP-synt_F: ATP synth 20.0 2.7E+02 0.0059 19.1 4.7 50 59-117 41-94 (95)
No 1
>KOG2869 consensus Meiotic cell division protein Pelota/DOM34 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-48 Score=324.99 Aligned_cols=183 Identities=59% Similarity=0.897 Sum_probs=178.9
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHH
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHL 80 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl 80 (184)
+++|.|+||+++.+++...++|+.+||+||+++-|++++.+++||+.|.+++.++++|+.++|+|||||||+++.|++|+
T Consensus 142 lqEGla~IcLvt~s~tilr~kIe~siPrKr~~~~s~~e~~l~kfye~V~qA~~k~v~fd~vk~~vvASpgF~~~~~~d~~ 221 (379)
T KOG2869|consen 142 LQEGLAHICLVTKSSTILRAKIEVSIPRKRKGDVSQHEEGLEKFYENVVQAILKHVNFDVVKCVVVASPGFVKDQFMDYL 221 (379)
T ss_pred hhcCceeEEEechhHHHHHHhhhcccccccCcchhHHHHHHHHHHHHHHHHHHHhcCcceEEEEEEcCCchhHHHHHHHH
Confidence 57999999999999999999999999999877789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCCCcEEeCHHHHHH
Q 030017 81 LLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEV 160 (184)
Q Consensus 81 ~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~~~v~YG~~eV~~ 160 (184)
...+.+..++.+..++++|+++|+|+|+.++|+|+|.+|.|.+.|+|+|++.|+++|++|+.+|+++|++||||+++|.+
T Consensus 222 ~q~A~~~~~k~il~nk~kf~~~h~ssg~~hslnevL~dp~v~~~l~dtK~~~EvkalddF~~~l~~~~drA~yG~khV~~ 301 (379)
T KOG2869|consen 222 FQQAVKLDLKLILENKSKFPLVHASSGYKHSLNEVLKDPAVASKLQDTKAAKEVKALDDFYVMLSKDPDRACYGPKHVEK 301 (379)
T ss_pred HHHHHHhchhhhhhcccceeEEecCCchHHHHHHHhcChHHHHHhhchhhHHHHHHHHHHHHHhccCccccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCccEEEeecCCcccCCCC
Q 030017 161 AHERMAVQTLLITDDLFRLVCSK 183 (184)
Q Consensus 161 A~e~GAVetLLisD~l~r~~d~~ 183 (184)
|+|+|||+||||||++||+.|++
T Consensus 302 A~e~~AI~tLLitD~lfr~~DV~ 324 (379)
T KOG2869|consen 302 ANEYGAIETLLITDELFRSQDVA 324 (379)
T ss_pred HHhhcchhheehhhhhcccccHH
Confidence 99999999999999999999875
No 2
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=100.00 E-value=3.1e-43 Score=305.18 Aligned_cols=164 Identities=27% Similarity=0.493 Sum_probs=151.9
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHH
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHL 80 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl 80 (184)
||+|+|+||+|+++++++++++++++||||+. +.+++++++||++|++++.+ ++++++||||||||+|++|++||
T Consensus 141 ~d~g~A~i~ll~~~~~~~~~~i~~~iP~K~~~--~~~e~~~~~Ff~~v~~~l~~---~~~v~~iIiaGPGf~k~~f~~~l 215 (351)
T TIGR00111 141 MEEGIAHVGLVRQYSVEEIQKIEYHMPGKKRT--LKFGELRKEFYKEIAKKLLN---FDDLKTIIVAGPGFYKNDFYDFI 215 (351)
T ss_pred EeCCcEEEEEEcCCEEEEEEEEEEeCCCCccc--chhHHHHHHHHHHHHHHHhh---hcccCEEEEECCHHHHHHHHHHH
Confidence 58999999999999999999999999999743 66889999999999999854 35899999999999999999999
Q ss_pred HHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCCCcEEeCHHHHHH
Q 030017 81 LLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEV 160 (184)
Q Consensus 81 ~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~~~v~YG~~eV~~ 160 (184)
.+++.+.. .+.++.++|+||.+||+|+|++|.++++|+++++++|.++|++|+++|++|++++|||+++|.+
T Consensus 216 ~~~~~~~~--------~k~ii~~~s~g~~~gl~EvL~~~~v~~~l~d~k~~~E~~~l~~f~~~l~kd~~~~~YG~~eV~~ 287 (351)
T TIGR00111 216 FERYPEEA--------NKAVLENCSTGGRAGINEVLKRGLVARILQETRYAKEIMVIDEFLEHLAKDGDKAVYGEDEVVK 287 (351)
T ss_pred HHHhhhhh--------CCcEEEecCCCchhHHHHHHhChHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEECHHHHHH
Confidence 98876542 2445779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCccEEEeecCCc
Q 030017 161 AHERMAVQTLLITDDLF 177 (184)
Q Consensus 161 A~e~GAVetLLisD~l~ 177 (184)
|+++|||+||||||++|
T Consensus 288 Ale~GAVetLLIsD~l~ 304 (351)
T TIGR00111 288 AAEYGAIEYLLVTDKVL 304 (351)
T ss_pred HHHcCCceEEEEecchh
Confidence 99999999999999996
No 3
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]
Probab=100.00 E-value=1.7e-41 Score=289.15 Aligned_cols=167 Identities=31% Similarity=0.467 Sum_probs=153.1
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHH
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHL 80 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl 80 (184)
||+|+|+||+++++|+.++.+++..+|||+... ..+..+||..|++++.++. +++.||||||||+|++|++|+
T Consensus 139 ~degea~i~iv~~ygi~~~~~i~~~~~gK~~~~----~~~~~k~~~~i~~~~~~~~---~~~~iIvaGPGF~k~~~~~~~ 211 (352)
T COG1537 139 VDEGEAAIAIVRDYGIIILGKIRSGIPGKREGD----IRAERKFFDEIAKALKEYA---NLDIIIVAGPGFAKEDFYDFL 211 (352)
T ss_pred EecCceEEEEEeccceEEEEEEeccCCCCcccc----hhhHHHHHHHHHHHHHHhh---CCCeEEEeCCchHHHHHHHHH
Confidence 589999999999999999999999999986444 2222899999999999987 688999999999999999999
Q ss_pred HHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCCCcEEeCHHHHHH
Q 030017 81 LLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEV 160 (184)
Q Consensus 81 ~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~~~v~YG~~eV~~ 160 (184)
.++ ++++. .++++++|++|.+|++|+|++|.+.++++++++++|.+++|+|+..|++++++||||+++|++
T Consensus 212 ~~~-----~p~~~----~~~~~~~s~~g~~gi~EvLkr~~v~ki~~e~ria~e~~~~e~fl~~iak~~~~v~YG~~eV~~ 282 (352)
T COG1537 212 RER-----YPELA----NIVIEDTSTGGRAGINEVLKRGAVDKILSETRIAEEIELVEEFLERLAKDDDKVAYGLEEVEK 282 (352)
T ss_pred HHh-----ccccc----ceEEEeccCcchHHHHHHHhhhhHHhHhhhhHHHHHHHHHHHHHHHHhcCCCceeEcHHHHHH
Confidence 998 45441 388999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCccEEEeecCCcccCCCC
Q 030017 161 AHERMAVQTLLITDDLFRLVCSK 183 (184)
Q Consensus 161 A~e~GAVetLLisD~l~r~~d~~ 183 (184)
|++||||++|||+|++||+.+.+
T Consensus 283 A~e~GAve~LLv~De~lr~~~~~ 305 (352)
T COG1537 283 AAEYGAVETLLVTDELLRSDDVE 305 (352)
T ss_pred HHhcCcceeEEeehhhhcccchh
Confidence 99999999999999999997643
No 4
>PRK04011 peptide chain release factor 1; Provisional
Probab=100.00 E-value=1.3e-37 Score=274.67 Aligned_cols=166 Identities=27% Similarity=0.359 Sum_probs=154.1
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCC-Ccch------hHHHHHHHHHHHHHHHHhccc---cCCcceEEEeCCc
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGP-AIAG------YESALNKFFENVLQAFLKHVD---FNVVRCAVIASPG 70 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~-~~s~------~~~~~~~ff~~i~~~l~~~~~---~~~v~~ivIaGPG 70 (184)
||+|+|+||++++++++++.++++++|+||+. |||+ +++++++||++|++.+.+++. +.++++|||||||
T Consensus 147 vD~~~A~i~~l~g~~~~~~~~i~~~vp~K~~~GG~S~~Rf~r~~e~~~~~f~k~Vae~~~~~f~~~~~~~v~~IvlaGpg 226 (411)
T PRK04011 147 VDRREATIGLLKGKRIEVLKELTSFVPGKHRKGGQSARRFERLIEQAAHEFYKRVGEKANEAFLPLLEGKLKGILIGGPG 226 (411)
T ss_pred EecCceEEEEEeCCEEEEEEEEEeeCCCCccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCh
Confidence 58999999999999999999999999999885 6886 689999999999999988763 4789999999999
Q ss_pred ccHHHHHH--HHHHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCC
Q 030017 71 FTKDQFHR--HLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDP 148 (184)
Q Consensus 71 f~k~~f~~--yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~ 148 (184)
|+|++|.+ ||.+++++++ +.++++|+++.+|++|++++. +++|++.++++|.++|++|++++++++
T Consensus 227 ~~K~~f~~~~~L~~~l~~~v----------v~~~~~s~~~~~Gl~E~l~~~--~~~L~~~k~~~e~~lle~f~~~l~~d~ 294 (411)
T PRK04011 227 PTKEEFLEGDYLHYELKKKI----------LGLFDVSYTGESGLRELVDKA--SDLLKEQELVKEKKLMEEFFKELAKDG 294 (411)
T ss_pred hHHHHHhhhhhhhHHHHhhe----------EEEEecCCCCccCHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHhcCC
Confidence 99999998 9999976542 347899999999999999984 999999999999999999999999999
Q ss_pred CcEEeCHHHHHHHHhccCccEEEeecCCcc
Q 030017 149 TRACYGPKHVEVAHERMAVQTLLITDDLFR 178 (184)
Q Consensus 149 ~~v~YG~~eV~~A~e~GAVetLLisD~l~r 178 (184)
+++|||+++|.+|+++|||+||||+|+++|
T Consensus 295 g~avyG~~~V~~Ale~GAVetLLV~d~l~~ 324 (411)
T PRK04011 295 GLAVYGEEEVRKALEMGAVDTLLISEDLRK 324 (411)
T ss_pred CcEEEcHHHHHHHHHcCCceEEEEeccccc
Confidence 999999999999999999999999999987
No 5
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=100.00 E-value=2.6e-37 Score=272.61 Aligned_cols=165 Identities=24% Similarity=0.357 Sum_probs=151.4
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCC-Ccch------hHHHHHHHHHHHHHHHHhcc---ccCCcceEEEeCCc
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGP-AIAG------YESALNKFFENVLQAFLKHV---DFNVVRCAVIASPG 70 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~-~~s~------~~~~~~~ff~~i~~~l~~~~---~~~~v~~ivIaGPG 70 (184)
||+|+|+||++++++++++.++++++|+||+. |||+ |++++++||++|++.+.+.+ +..++++|||||||
T Consensus 143 vD~~~A~i~~l~g~~~~~~~~i~~~vp~K~~~GGqS~~Rf~r~~e~~~~~f~~~Vae~~~~~f~~~~~~~v~~IIlaGpg 222 (409)
T TIGR00108 143 LDRQEATIGLVKGKRITVLKKLTSGVPGKHKAGGQSARRFERLRELAAHEFLKKVGEVANEAFLPNDDVKLKGIILGGPG 222 (409)
T ss_pred EecCCEEEEEEcCCEEEEEEEEeeeCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccceEEEEeccH
Confidence 68999999999999999999999999999877 6886 68899999999999888875 22379999999999
Q ss_pred ccHHHHHH--HHHHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCC
Q 030017 71 FTKDQFHR--HLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDP 148 (184)
Q Consensus 71 f~k~~f~~--yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~ 148 (184)
|+|++|.+ ||.+++.+++ +.++++|+||.+|++|++.+. +++|++.++++|.++|++|++++++++
T Consensus 223 ~~K~~f~~~~~l~~~l~~kv----------i~~vdvs~gg~~gl~E~l~~~--~~~L~~~k~~~E~~lle~F~~ei~~d~ 290 (409)
T TIGR00108 223 HTKEEFAEGEYLHHELKKKV----------ISTVDVSYTGEFGIRELIEKS--ADVLAEVDYMREKKLVQRFLKELIQED 290 (409)
T ss_pred HHHHHhhhhhhHHHHhhhhE----------EEEEEcCCCcccCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999997 9999876542 446899999999999999976 999999999999999999999999999
Q ss_pred CcEEeCHHHHHHHHhccCccEEEeecCCc
Q 030017 149 TRACYGPKHVEVAHERMAVQTLLITDDLF 177 (184)
Q Consensus 149 ~~v~YG~~eV~~A~e~GAVetLLisD~l~ 177 (184)
|++|||+++|.+|+++|||+||||+|++.
T Consensus 291 G~avyG~~eV~~ALe~GAVetLLV~d~l~ 319 (409)
T TIGR00108 291 GLACYGEDEVLKALDLGAVETLIVSEDLE 319 (409)
T ss_pred CcEEeCHHHHHHHHHhCCCcEEEEecccc
Confidence 99999999999999999999999999994
No 6
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=100.00 E-value=2.9e-37 Score=271.72 Aligned_cols=164 Identities=27% Similarity=0.363 Sum_probs=151.2
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCC-Ccch------hHHHHHHHHHHHHHHHHhccc---cCCcceEEEeCCc
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGP-AIAG------YESALNKFFENVLQAFLKHVD---FNVVRCAVIASPG 70 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~-~~s~------~~~~~~~ff~~i~~~l~~~~~---~~~v~~ivIaGPG 70 (184)
||+|+|+||++++++++++.++++++|+||+. |||+ |++++++||++|++.+.+++. ..++++|||||||
T Consensus 139 vD~~~A~i~~l~g~~~e~~~~i~~~vp~K~~~GGqS~~Rf~R~~e~~~~~f~~~Vae~~~~~f~~~~~~~v~~lILaGpg 218 (403)
T TIGR03676 139 LDRREATIGLLKGKRIEVLKELTSGVPGKHRAGGQSARRFERLIEIAAHEFYKRVGEAANEAFLPLKDKKLKGILIGGPG 218 (403)
T ss_pred EecCceEEEEEcCCEEEEEEEEEeeCCCCccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccEEEEeCCH
Confidence 58999999999999999999999999999875 6887 789999999999999877642 1269999999999
Q ss_pred ccHHHHHH--HHHHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCC
Q 030017 71 FTKDQFHR--HLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDP 148 (184)
Q Consensus 71 f~k~~f~~--yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~ 148 (184)
|+|++|.+ ||++++++++ +.++++|+++.+|++|++++. +++|++.++++|.++|++|++++++++
T Consensus 219 ~~K~~f~~~~~L~~~l~~kv----------i~~vd~s~~~~~Gl~Evl~~~--~~~L~~~k~~~E~~lle~f~~el~~d~ 286 (403)
T TIGR03676 219 PTKEEFAEGDYLHHELKKKI----------LGLFDVSYTGESGLRELVEKA--EDLLKDLELMKEKKLMERFFKELVKDG 286 (403)
T ss_pred HHHHHHhhhhhhhHHHHhhE----------EEEEecCCCCccCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999 9999876542 467899999999999999984 999999999999999999999999999
Q ss_pred CcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 149 TRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 149 ~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
+++|||+++|.+|+++|||+||||+|++
T Consensus 287 g~avyG~~eV~~ALe~GAVetLLV~d~l 314 (403)
T TIGR03676 287 GLAAYGEEEVRKALEMGAVDTLLISEDL 314 (403)
T ss_pred CcEEEcHHHHHHHHHhCCCcEEEEEccc
Confidence 9999999999999999999999999999
No 7
>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....
Probab=99.97 E-value=1.8e-30 Score=197.06 Aligned_cols=120 Identities=43% Similarity=0.666 Sum_probs=108.3
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCC-Ccchh----HHHHHHHHHHHHHHHHhc--cccCCcceEEEeCCcccH
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGP-AIAGY----ESALNKFFENVLQAFLKH--VDFNVVRCAVIASPGFTK 73 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~-~~s~~----~~~~~~ff~~i~~~l~~~--~~~~~v~~ivIaGPGf~k 73 (184)
||+|+|+||+|+++++++++++++++|+||+. |+|++ ++++++||++|++++.++ .+++++++||||||||+|
T Consensus 7 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~Gg~s~~rf~r~~~~~~f~~~i~~~l~~~f~~~~~~~~~iIiaGPGf~k 86 (133)
T PF03464_consen 7 IDEGEANICLLRGYGTEILQRIESNIPGKHKKGGQSQRRFEREKALEKFFKEIAEALKKYFLVNFDDVKCIIIAGPGFTK 86 (133)
T ss_dssp EETTEEEEEEEETTEEEEEEEEE-GHCCCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHTTTCSEEEEEESTTHH
T ss_pred EeCCCEEEEEEcCCEEEEEEEEEecCCCccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccccccEEEEECCHHHH
Confidence 58999999999999999999999999999986 57764 899999999999999999 789999999999999999
Q ss_pred HHHHHHHHHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhh
Q 030017 74 DQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKD 127 (184)
Q Consensus 74 ~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~ 127 (184)
++|++|+..+...+. +.++.++++|+++++||+|+|++|+++++|+|
T Consensus 87 ~~f~~~l~~~~~~~~-------~~~i~~~~~s~~~~~gl~Evl~~~~v~~~l~d 133 (133)
T PF03464_consen 87 EEFYKYLKAEARRKD-------KKKIVVVDTSSGGESGLNEVLKRPEVQKILKD 133 (133)
T ss_dssp HHHHHHHHHHHHHHT-------CCEEEEEE-SSSCHHHHHHHHHSHHHHHHHCT
T ss_pred HHHHHHHHHhhHhhc-------CCEEEEEECCCCCHHHHHHHHHhhhHHHHhcC
Confidence 999999999866542 24688999999999999999999999999875
No 8
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.9e-30 Score=223.82 Aligned_cols=165 Identities=27% Similarity=0.366 Sum_probs=152.5
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCC-Ccch------hHHHHHHHHHHHHHHHHhccc---cCCcceEEEeCCc
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGP-AIAG------YESALNKFFENVLQAFLKHVD---FNVVRCAVIASPG 70 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~-~~s~------~~~~~~~ff~~i~~~l~~~~~---~~~v~~ivIaGPG 70 (184)
||.++|++++|.+..++++.++++.+||||+. |||+ ++.+.+.||++|.+...+.+. ..++++|+|+|||
T Consensus 146 ~dr~ea~ig~l~g~r~evl~~~~s~vpgKh~~Ggqsa~rferl~ee~~h~f~k~vge~A~e~f~~~~~~~~kgIilgGp~ 225 (411)
T COG1503 146 LDRIEATIGLLKGKRIEVLKELTSDVPGKHRAGGQSARRFERLIEEAAHEFYKKVGEAASEAFLPIAKKELKGIILGGPG 225 (411)
T ss_pred EecccceeeeeccceeeHhhhhcccCcchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcceEeeCCc
Confidence 57899999999999999999999999999988 5886 788999999999998877762 1268999999999
Q ss_pred ccHHHHHH--HHHHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCC
Q 030017 71 FTKDQFHR--HLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDP 148 (184)
Q Consensus 71 f~k~~f~~--yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~ 148 (184)
.+|++|.+ ||+++++.++. -++++++++.+|++|++..+ .+.|.+.++.+|.++|++|++++.+++
T Consensus 226 ~tk~ef~e~~yL~~~lk~kv~----------~lvDv~y~~esg~~eli~~A--~d~L~~~~~~~eK~l~e~f~~e~~~~~ 293 (411)
T COG1503 226 PTKEEFVEGDYLHHELKKKVL----------GLVDVSYTGESGLRELIEKA--EDALKDVDYVREKKLMEEFFKELAKDS 293 (411)
T ss_pred ccchhhhcccccchHHHHHHH----------hhccccccccccHHHHHHHh--HHHHHhhhhhcchhHHHHHHHHhccCc
Confidence 99999996 99999888753 26799999999999999999 999999999999999999999999999
Q ss_pred CcEEeCHHHHHHHHhccCccEEEeecCCc
Q 030017 149 TRACYGPKHVEVAHERMAVQTLLITDDLF 177 (184)
Q Consensus 149 ~~v~YG~~eV~~A~e~GAVetLLisD~l~ 177 (184)
|++|||.++|++|+++|||++|||+.++=
T Consensus 294 Gla~yG~~~vr~aL~~gaVd~llv~Edl~ 322 (411)
T COG1503 294 GLAVYGEEEVREALEMGAVDTLLVSEDLE 322 (411)
T ss_pred ceeecchHHHHHHHHhcccceEEeecccc
Confidence 99999999999999999999999999875
No 9
>KOG0688 consensus Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=5.5e-23 Score=173.51 Aligned_cols=165 Identities=16% Similarity=0.263 Sum_probs=147.8
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCC-Ccch------hHHHHHHHHHHHHHHHHhcc---ccCCcceEEEeCCc
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGP-AIAG------YESALNKFFENVLQAFLKHV---DFNVVRCAVIASPG 70 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~-~~s~------~~~~~~~ff~~i~~~l~~~~---~~~~v~~ivIaGPG 70 (184)
||...+.+++++++..++++++++++|+||.. |||+ |.+..+.|.+.+++...+.+ +..++.++|+||..
T Consensus 147 mDg~~tlfgtl~gntrevLhkftVdlPkkhgrggqSalrfarlR~ekRhnYVrkvae~a~q~fi~~~~~Nv~gLilaGsa 226 (431)
T KOG0688|consen 147 MDGNGTLFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAELAVQRFITNDKPNVAGLILAGSA 226 (431)
T ss_pred EcCCceeEEEeccchHhhhheeeecCccccCccchhHHhhhhhhhhhhccceeeecccceeEEecCCCcceeEEEEeccc
Confidence 57778899999999999999999999999988 4774 78888999999999877775 44579999999999
Q ss_pred ccHHHHHH--HHHHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCC
Q 030017 71 FTKDQFHR--HLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDP 148 (184)
Q Consensus 71 f~k~~f~~--yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~ 148 (184)
.+|.++.+ .+.++++.++ +.++++|+||..|++++|.-. .++|++.++++|.+++.+||++++.|.
T Consensus 227 dfKtelsqSd~fd~rlqskv----------i~~vdvsyGGengfnQaIeL~--aevlsnvk~vqekkli~~yfdEisqdt 294 (431)
T KOG0688|consen 227 DFKTELSQSDMFDPRLQSKV----------LKTVDVSYGGENGFNQAIELS--AEVLSNVKFVQEKKLIGKYFDEISQDT 294 (431)
T ss_pred ccccccchhhhcchHHhhhH----------HhhhcccccchhhHHHHHHHH--HhhhhcceeeehhhHHHHHhhhhhccc
Confidence 99888874 6777877664 346899999999999999998 899999999999999999999999999
Q ss_pred CcEEeCHHHHHHHHhccCccEEEeecCCc
Q 030017 149 TRACYGPKHVEVAHERMAVQTLLITDDLF 177 (184)
Q Consensus 149 ~~v~YG~~eV~~A~e~GAVetLLisD~l~ 177 (184)
|+.|||++++..|+++|||+||++.+.|=
T Consensus 295 gky~Fgv~dTl~aLe~gavetli~~enLd 323 (431)
T KOG0688|consen 295 GKYCFGVEDTLLALEMGAVETLIVWENLD 323 (431)
T ss_pred CcccccHHHHHHHHHcCCeeehhHhhhhh
Confidence 99999999999999999999999987653
No 10
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=99.57 E-value=3.2e-15 Score=110.62 Aligned_cols=52 Identities=44% Similarity=0.603 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCcEEeCHHHHHHHHhccCccEEEeecCCcccCC
Q 030017 130 AAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVC 181 (184)
Q Consensus 130 ~~~e~~~le~f~~~l~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l~r~~d 181 (184)
+++|.+++++|++++.++++++|||+++|.+|+++|||+||||||+++|+.+
T Consensus 1 ~~~E~~~ve~f~~~l~k~~~~~~yG~~eV~~Al~~GaV~~LlI~d~l~~~~~ 52 (113)
T PF03465_consen 1 IIKEKKLVEEFFEELAKDPGLAVYGIEEVKKALEMGAVETLLISDDLFRSRD 52 (113)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSEEESHHHHHHHHHTT-EEEEEEEHHHHTESC
T ss_pred CHHHHHHHHHHHHHHhhCCCcEEECHHHHHHHHHhCCCcEEEEecccccccc
Confidence 5789999999999999999999999999999999999999999999999864
No 11
>PF10116 Host_attach: Protein required for attachment to host cells; InterPro: IPR019291 Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells [, ].
Probab=94.53 E-value=0.17 Score=38.22 Aligned_cols=91 Identities=14% Similarity=0.125 Sum_probs=58.0
Q ss_pred CcCeeEEEEEeCCeE---EEE------------EEEEeeCCCCCCCCc----------chhHHHHHHHHHHHHHHHHhcc
Q 030017 2 QEGLAHILLVGRSMT---ITR------------SRIETSIPRKHGPAI----------AGYESALNKFFENVLQAFLKHV 56 (184)
Q Consensus 2 d~g~A~i~~l~~~~~---~~~------------~~i~~~ip~K~~~~~----------s~~~~~~~~ff~~i~~~l~~~~ 56 (184)
|.+.|.|+-..+... ..+ ..+..+-||....+. +..+...++|.++|++.|.+..
T Consensus 7 D~~~Ar~f~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~d~~Gr~~~~~g~~~~~~~~~~~~~~~~~~Fa~~vA~~L~~~~ 86 (138)
T PF10116_consen 7 DGSRARIFENEGDESEPLLELEELDHPESRLKDRDLVSDRPGRFHDSAGQRGSMEERTDPKEEEEERFAREVADRLEKAR 86 (138)
T ss_pred ecceeEEEEecCCCCCcchhhhhhcccccccchhhhccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 567778877777654 211 233344555422211 1267778899999999999988
Q ss_pred ccCCcceEEEeCCcccHHHHHHHHHHHHHhccchhh
Q 030017 57 DFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPI 92 (184)
Q Consensus 57 ~~~~v~~ivIaGPGf~k~~f~~yl~~~~~~~~~~~l 92 (184)
.....+.+||++|--+--.+.+-|...+++.+..++
T Consensus 87 ~~~~~~~LvlvA~p~~LG~LR~~L~~~~~~~V~~ei 122 (138)
T PF10116_consen 87 RAGKFDRLVLVAPPRFLGLLREHLSKAVRKRVVGEI 122 (138)
T ss_pred HhCCCCeEEEEECHHHHHHHHHHhCHHHHHHHHHHH
Confidence 777788887777774444556666666665554444
No 12
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=79.64 E-value=2.3 Score=30.80 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=28.9
Q ss_pred hhcCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 144 LTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 144 l~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
|+...+++++|.+.|.+|+..|.+.-|++..|.
T Consensus 11 lA~rAGklv~G~~~v~~aik~gk~~lVI~A~D~ 43 (104)
T PRK05583 11 LTKKAGKLLEGYNKCEEAIKKKKVYLIIISNDI 43 (104)
T ss_pred HHHHhCCeeecHHHHHHHHHcCCceEEEEeCCC
Confidence 344569999999999999999999999998875
No 13
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=79.63 E-value=2.5 Score=27.87 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=22.8
Q ss_pred EeCHHHHHHHHhccC-ccEEEeecC
Q 030017 152 CYGPKHVEVAHERMA-VQTLLITDD 175 (184)
Q Consensus 152 ~YG~~eV~~A~e~GA-VetLLisD~ 175 (184)
.||...|.+|++.|. |..|+++++
T Consensus 2 ieG~~~V~eaL~~~~~i~~l~~~~~ 26 (76)
T PF08032_consen 2 IEGRHAVEEALKSGPRIKKLFVTEE 26 (76)
T ss_dssp EESHHHHHHHHHCTGGEEEEEEETT
T ss_pred EEEHHHHHHHHcCCCCccEEEEEcC
Confidence 699999999999988 999999998
No 14
>PRK07714 hypothetical protein; Provisional
Probab=79.51 E-value=2.3 Score=30.34 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=28.0
Q ss_pred hcCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 145 TNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 145 ~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
+...+++++|.+.|.+|+..|-+.-+++..|.
T Consensus 13 a~raGk~v~G~~~v~~al~~g~~~lViiA~D~ 44 (100)
T PRK07714 13 ANRARKVISGEELVLKEVRSGKAKLVLLSEDA 44 (100)
T ss_pred HHHhCCeeecHHHHHHHHHhCCceEEEEeCCC
Confidence 34458999999999999999999999998865
No 15
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=79.31 E-value=5.2 Score=27.76 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=26.7
Q ss_pred CCcEEeCHHHHHHHHhccCccEEEeecCCc
Q 030017 148 PTRACYGPKHVEVAHERMAVQTLLITDDLF 177 (184)
Q Consensus 148 ~~~v~YG~~eV~~A~e~GAVetLLisD~l~ 177 (184)
.+++++|.++|.++++.|-+.-++++.+.-
T Consensus 13 ~~~lv~G~~~v~k~l~~~~~~lvilA~d~~ 42 (95)
T PF01248_consen 13 AGRLVKGIKEVLKALKKGKAKLVILAEDCS 42 (95)
T ss_dssp HSEEEESHHHHHHHHHTTCESEEEEETTSS
T ss_pred cCCEEEchHHHHHHHHcCCCcEEEEcCCCC
Confidence 378999999999999999999999988753
No 16
>PRK07283 hypothetical protein; Provisional
Probab=79.13 E-value=2.5 Score=30.12 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=28.7
Q ss_pred hhcCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 144 LTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 144 l~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
|+...++++.|.+.|.+|+..|.+.-++++.|.
T Consensus 12 lA~raGklv~G~~~v~~aik~gk~~lVi~A~Da 44 (98)
T PRK07283 12 LAQRAGRIISGEELVVKAIQSGQAKLVFLANDA 44 (98)
T ss_pred HHHHhCCeeEcHHHHHHHHHcCCccEEEEeCCC
Confidence 344559999999999999999999999998874
No 17
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=78.59 E-value=5.3 Score=29.42 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=31.8
Q ss_pred HHHHHHHh--hcCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 137 LKDFFNML--TNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 137 le~f~~~l--~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
.++++..| +...+..++|.++|.+|++.|-+.-++|+.|.
T Consensus 11 ~~ki~~lL~la~ragkl~~G~~~v~kaikkgka~LVilA~D~ 52 (117)
T TIGR03677 11 ANKALEAVEKARETGKIKKGTNEVTKAVERGIAKLVVIAEDV 52 (117)
T ss_pred HHHHHHHHHHHHHcCCEeEcHHHHHHHHHcCCccEEEEeCCC
Confidence 34444443 23458999999999999999999999999886
No 18
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found at the N terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition [].; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1F7V_A 1F7U_A 1BS2_A 2ZUE_A 2ZUF_A 1IQ0_A 3GDZ_B.
Probab=77.73 E-value=2.9 Score=28.61 Aligned_cols=27 Identities=15% Similarity=0.459 Sum_probs=19.9
Q ss_pred HHHHHHHHhccccC-CcceEEEeCCccc
Q 030017 46 ENVLQAFLKHVDFN-VVRCAVIASPGFT 72 (184)
Q Consensus 46 ~~i~~~l~~~~~~~-~v~~ivIaGPGf~ 72 (184)
.+|++.+.+.+... .++.+-++||||+
T Consensus 54 ~~iA~~i~~~l~~~~~i~~vev~gpGFi 81 (85)
T PF03485_consen 54 REIAEEIAEKLEKSPIIEKVEVAGPGFI 81 (85)
T ss_dssp HHHHHHHHHCHCTTTTEEEEEEETTTEE
T ss_pred HHHHHHHHHhcCCCCCEEEEEEcCCcEE
Confidence 46667776666433 3889999999986
No 19
>PRK09557 fructokinase; Reviewed
Probab=74.59 E-value=16 Score=30.63 Aligned_cols=70 Identities=7% Similarity=0.021 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHHHHHHHhccchhhhhccCcEEEEecCCCcchhH
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSL 112 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl 112 (184)
+.+++|.+.++.++....+.-++..|||+|.-...+.|.+.+.+.+++...+.. . +..++.++.+...++
T Consensus 223 ~~l~~~~~~La~~l~~l~~~ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~---~-~~~i~~s~~~~~a~~ 292 (301)
T PRK09557 223 LAFRRYEDRLAKSLAHVINILDPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGE---C-ETPVRKALHGDSSGV 292 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEcCcccchHHHHHHHHHHHHHHhcccc---c-CCeEEEcccCCchhh
Confidence 456677777777777777777899999999765555666666666554332211 1 233444555555544
No 20
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=73.04 E-value=8.6 Score=28.00 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 137 LKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 137 le~f~~~l~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
++.++- ++...+++..|.+.|.+|+..|-+.-++|+.+.
T Consensus 13 i~~~Lg-la~raGKlv~G~~~vlkalk~gkaklViiA~D~ 51 (108)
T PTZ00106 13 INSKLQ-LVMKSGKYTLGTKSTLKALRNGKAKLVIISNNC 51 (108)
T ss_pred HHHHHH-HHHHhCCeeecHHHHHHHHHcCCeeEEEEeCCC
Confidence 334433 344459999999999999999999999999875
No 21
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=73.00 E-value=7.6 Score=26.76 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=28.2
Q ss_pred HhhcCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 143 MLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 143 ~l~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
.+.+. ++...|.++|.+|++.|-+..++|..|.
T Consensus 5 ~~~ra-gkl~~G~~~v~kai~~gkaklViiA~D~ 37 (82)
T PRK13602 5 KVSQA-KSIVIGTKQTVKALKRGSVKEVVVAEDA 37 (82)
T ss_pred HHHhc-CCEEEcHHHHHHHHHcCCeeEEEEECCC
Confidence 34444 7899999999999999999999998874
No 22
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=72.72 E-value=11 Score=27.92 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=30.8
Q ss_pred HHHHHhhcCCCcEEeCHHHHHHHHhccCccEEEeecCCc
Q 030017 139 DFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLF 177 (184)
Q Consensus 139 ~f~~~l~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l~ 177 (184)
.++....+ .+.+..|.++|.+|++.|-+.-++|..|.-
T Consensus 20 ~lL~la~r-agklv~G~~~v~kaikkgkakLVilA~D~s 57 (122)
T PRK04175 20 EAVEKARD-TGKIKKGTNETTKAVERGIAKLVVIAEDVD 57 (122)
T ss_pred HHHHHHHH-cCCEeEcHHHHHHHHHcCCccEEEEeCCCC
Confidence 34443344 489999999999999999999999998863
No 23
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=70.27 E-value=13 Score=31.09 Aligned_cols=48 Identities=6% Similarity=0.047 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHHHHHHHh
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAER 86 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~~~ 86 (184)
..+++|...++..+....+.-+++.|||+|+....+.|.+.+...+++
T Consensus 212 ~~~~~~~~~la~~l~~l~~~~dpe~IvlgG~~~~~~~~~~~i~~~l~~ 259 (291)
T PRK05082 212 ALINRSAQAIARLIADLKATLDCQCVVLGGSVGLAEGYLELVQAYLAQ 259 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEcCccccHHHHHHHHHHHHHh
Confidence 345566677777777776667899999999977666676666666544
No 24
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=68.29 E-value=14 Score=26.23 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=27.1
Q ss_pred CCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 148 PTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 148 ~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
.++...|.++|.+|++.|-+.-++|+++.
T Consensus 14 agkl~~G~~~v~kai~~gkaklViiA~D~ 42 (99)
T PRK01018 14 TGKVILGSKRTIKAIKLGKAKLVIVASNC 42 (99)
T ss_pred cCCEEEcHHHHHHHHHcCCceEEEEeCCC
Confidence 58999999999999999999999999884
No 25
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=66.35 E-value=31 Score=28.85 Aligned_cols=70 Identities=9% Similarity=0.024 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHHHHHHHhccchhhhhccCcEEEEecCCCcchhH
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSL 112 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl 112 (184)
+.+++|.+.++..+....+.-++..|||+|+-...+.|.+.+.+.+.+...+.. .+..++.++.+...++
T Consensus 224 ~~~~~~~~~la~~l~n~~~~ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~----~~~~i~~s~~~~~a~~ 293 (303)
T PRK13310 224 AHVERYLDLLAICLGNILTIVDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVA----RVPRIEKARHGDAGGV 293 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccChHHHHHHHHHHHHHHhcccc----cCceEEEcccCchHHH
Confidence 445666667777777776777899999999644345566666666544332211 1233445555555444
No 26
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=64.61 E-value=11 Score=26.02 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=26.6
Q ss_pred CCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 148 PTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 148 ~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
++++..|.++|.+|++.|-+..++|..|.
T Consensus 6 ~GKlv~G~~~vlkaIk~gkakLViiA~Da 34 (82)
T PRK13601 6 PSKRVVGAKQTLKAITNCNVLQVYIAKDA 34 (82)
T ss_pred CccEEEchHHHHHHHHcCCeeEEEEeCCC
Confidence 57899999999999999999999998875
No 27
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=64.13 E-value=11 Score=27.96 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=27.0
Q ss_pred CCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 147 DPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 147 ~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
..+.+.+|.++|-+|++.|-..-++|+.|.
T Consensus 24 ~~~ki~~G~~e~~Kai~~g~a~LVviA~Dv 53 (116)
T COG1358 24 RAGKLKKGTNEVTKAIERGKAKLVVIAEDV 53 (116)
T ss_pred hcCCchhhHHHHHHHHHcCCCcEEEEecCC
Confidence 447899999999999999999999998875
No 28
>PRK06683 hypothetical protein; Provisional
Probab=64.01 E-value=16 Score=25.23 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=27.1
Q ss_pred CCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 147 DPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 147 ~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
+.+++..|.+.|.+|++.|-+..++|..|.
T Consensus 8 ~agk~v~G~~~v~kaik~gkaklViiA~Da 37 (82)
T PRK06683 8 NAENVVVGHKRTLEAIKNGIVKEVVIAEDA 37 (82)
T ss_pred hCCCEEEcHHHHHHHHHcCCeeEEEEECCC
Confidence 448899999999999999999999998764
No 29
>PRK09190 hypothetical protein; Provisional
Probab=61.00 E-value=43 Score=27.51 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=28.1
Q ss_pred hcCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 145 TNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 145 ~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
++..++++.|.+.|..|+..|-+.-||+..|.
T Consensus 106 ArRAGklVsG~~~V~~alk~gk~~Lvi~A~Da 137 (220)
T PRK09190 106 ARKAGQVVSGFEKVDAALRSGEAAALIHASDG 137 (220)
T ss_pred HhhhCCEeecHHHHHHHHHcCCceEEEEeccC
Confidence 45569999999999999999999999988764
No 30
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=57.64 E-value=53 Score=28.49 Aligned_cols=63 Identities=21% Similarity=0.332 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhccccCCcceEEEeC---CcccHHHHHHHHHHHHHhccchhhhhccCcEEEEecCCCcchhHHH
Q 030017 38 ESALNKFFENVLQAFLKHVDFNVVRCAVIAS---PGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLRE 114 (184)
Q Consensus 38 ~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaG---PGf~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E 114 (184)
+..++.|.+.+...+.+ .+.|||+| ||.-. ++|.-+-+.+++. ...+++|+|. ..|.+
T Consensus 113 ~~~~~~~l~~~~~~l~~------~d~VvlsGSlP~g~~~-d~y~~li~~~~~~---------g~~vilD~Sg---~~L~~ 173 (310)
T COG1105 113 EAELEQFLEQLKALLES------DDIVVLSGSLPPGVPP-DAYAELIRILRQQ---------GAKVILDTSG---EALLA 173 (310)
T ss_pred HHHHHHHHHHHHHhccc------CCEEEEeCCCCCCCCH-HHHHHHHHHHHhc---------CCeEEEECCh---HHHHH
Confidence 56666666654443333 44699999 56555 4444444444433 2355778776 45677
Q ss_pred HhcCc
Q 030017 115 VLDAP 119 (184)
Q Consensus 115 ~l~~~ 119 (184)
+|+-+
T Consensus 174 ~L~~~ 178 (310)
T COG1105 174 ALEAK 178 (310)
T ss_pred HHccC
Confidence 77655
No 31
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=56.38 E-value=21 Score=24.88 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.7
Q ss_pred EEeCHHHHHHHHhccCccEEEeecCC
Q 030017 151 ACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 151 v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
..+|.+++.+|++.|-+..++|..|.
T Consensus 14 ~vvG~kqt~Kai~kg~~~~v~iA~Da 39 (84)
T PRK13600 14 FVVGLKETLKALKKDQVTSLIIAEDV 39 (84)
T ss_pred ceeeHHHHHHHHhcCCceEEEEeCCC
Confidence 48999999999999999999998764
No 32
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=53.36 E-value=58 Score=27.28 Aligned_cols=49 Identities=6% Similarity=-0.079 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhccccCCcceEEEeCCccc-HHHHHHHHHHHHHhc
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVRCAVIASPGFT-KDQFHRHLLLEAERR 87 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~-k~~f~~yl~~~~~~~ 87 (184)
+.++++...++.++....+.-+++.|||+|+-+. .+.|.+.+.+.+++.
T Consensus 230 ~i~~~~~~~L~~~i~~~~~~~dP~~IvlgG~~~~~~~~~~~~i~~~~~~~ 279 (318)
T TIGR00744 230 DSYREVARWAGAGLADLASLFNPSAIVLGGGLSDAGDLLLDPIRKSYKRW 279 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEECChhhhCcHHHHHHHHHHHHHH
Confidence 4555666666666666666668899999997532 245666666665543
No 33
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.63 E-value=30 Score=32.54 Aligned_cols=28 Identities=21% Similarity=0.515 Sum_probs=19.8
Q ss_pred HHHHHHHHhccccC-CcceEEEeCCcccH
Q 030017 46 ENVLQAFLKHVDFN-VVRCAVIASPGFTK 73 (184)
Q Consensus 46 ~~i~~~l~~~~~~~-~v~~ivIaGPGf~k 73 (184)
++|++.+.+.+..+ -+..|-++||||+.
T Consensus 57 ~eiA~~i~~~l~~~~~~~~veiaGpgfIN 85 (577)
T COG0018 57 REIAEEIAEKLDTDEIIEKVEIAGPGFIN 85 (577)
T ss_pred HHHHHHHHHhccccCcEeEEEEcCCCEEE
Confidence 35666666666544 47789999999763
No 34
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=47.49 E-value=1.5e+02 Score=25.12 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=21.6
Q ss_pred CcceEEEeCCcccHHHHHHHHHHHHH
Q 030017 60 VVRCAVIASPGFTKDQFHRHLLLEAE 85 (184)
Q Consensus 60 ~v~~ivIaGPGf~k~~f~~yl~~~~~ 85 (184)
.++.|+++|-|.--..|.+++.+.+.
T Consensus 282 ~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 282 SLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred ccceEEEECccccchhHHHHHHHHHC
Confidence 58899999988777788889888754
No 35
>PRK09698 D-allose kinase; Provisional
Probab=47.22 E-value=76 Score=26.44 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhccccCCcceEEEeCCcccH-HHHHHHHHHHHHhccchhhhhccCcEEEEecCCCcchhH
Q 030017 40 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTK-DQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSL 112 (184)
Q Consensus 40 ~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k-~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl 112 (184)
.+++|.+.++..+...++.-++..|||+|...-- +.|.+++.+.+++...+... ..++.+..++.+...++
T Consensus 216 ~~~~~~~~la~~l~~li~~ldP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~i~~~~~~~~a~~ 287 (302)
T PRK09698 216 FIQSLLENLARAIATSINLFDPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLP--YEVVRFIYASSSDFNGA 287 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEcCccccCchhHHHHHHHHHHHHccCccc--cCCcEEEECCcCCcccH
Confidence 4566777777777777776789999999975432 23456666665554321110 11233344555555444
No 36
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=45.98 E-value=40 Score=29.64 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHhcccc-------CCcceEEEeCCcccHHHHHHHHHHHH
Q 030017 38 ESALNKFFENVLQAFLKHVDF-------NVVRCAVIASPGFTKDQFHRHLLLEA 84 (184)
Q Consensus 38 ~~~~~~ff~~i~~~l~~~~~~-------~~v~~ivIaGPGf~k~~f~~yl~~~~ 84 (184)
...+..|..++.+.+.+.+.| .++++|+++|||-.-..+.+++.+++
T Consensus 258 ~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 258 SEVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 455678888888887776543 47999999999999988888887764
No 37
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=45.50 E-value=58 Score=27.11 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHHHHHH
Q 030017 40 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEA 84 (184)
Q Consensus 40 ~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~ 84 (184)
.++.+++++.+.+.+.+....++.|+++|-|---..+.+++.+.+
T Consensus 201 ii~~~~~~i~~~i~~~l~~~~~~~IvLtGG~s~lpgl~e~l~~~l 245 (267)
T PRK15080 201 VVKPVVEKMASIVARHIEGQDVEDIYLVGGTCCLPGFEEVFEKQT 245 (267)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEECCcccchhHHHHHHHHh
Confidence 345677777777777776667888999988866666777777765
No 38
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=45.43 E-value=52 Score=29.81 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=33.1
Q ss_pred EEEeCCcccHHHHHH-------HHHHHHHh-------ccchhhhhccCcEEEEecCCCcchhHHHHhcC
Q 030017 64 AVIASPGFTKDQFHR-------HLLLEAER-------RQLRPIIENKSRIILVHTSSGYKHSLREVLDA 118 (184)
Q Consensus 64 ivIaGPGf~k~~f~~-------yl~~~~~~-------~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~ 118 (184)
|+||||+|---.|-. ++.+++.- ..++.+..=+++++++.++. +-.|+++.|..
T Consensus 79 v~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaMy~ENpgvd~yk~~vyIv~t~~-sa~gmr~al~~ 146 (431)
T TIGR01917 79 IFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAMYEENPGADMFKKEVYVIPTAD-SAAGMRKALPA 146 (431)
T ss_pred EEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEecccChHHHHHhhCcEEEECCC-chhhHHHHHHH
Confidence 788999987666632 33332211 11233333355788899888 67788888654
No 39
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=45.35 E-value=61 Score=27.17 Aligned_cols=48 Identities=8% Similarity=0.047 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhccccCCcceEEEeC--CcccHHHHHHHHHHHHHhc
Q 030017 40 ALNKFFENVLQAFLKHVDFNVVRCAVIAS--PGFTKDQFHRHLLLEAERR 87 (184)
Q Consensus 40 ~~~~ff~~i~~~l~~~~~~~~v~~ivIaG--PGf~k~~f~~yl~~~~~~~ 87 (184)
.++++...++..+....+..++..|||+| +.-..+.|.+.+...+...
T Consensus 227 ~~~~~~~~la~~ianl~~~~~P~~IvigG~g~~~~~~~~~~~l~~~~~~~ 276 (314)
T COG1940 227 VIERAADYLARGLANLINLLDPEVIVIGGGGVSALGDLLLPRLRKLLAKY 276 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccchhHHHHHHHHHHHHh
Confidence 46677777777777777777899999987 5556677777777665544
No 40
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=44.80 E-value=1.4e+02 Score=22.83 Aligned_cols=55 Identities=16% Similarity=0.041 Sum_probs=33.8
Q ss_pred CcCeeEEEEEeCCeEEE----EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEE
Q 030017 2 QEGLAHILLVGRSMTIT----RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVI 66 (184)
Q Consensus 2 d~g~A~i~~l~~~~~~~----~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivI 66 (184)
..++|-||+|+...-.. +..-.-.+++ +...+.+.+|..++.+.+.++ +|+.|+|
T Consensus 9 kgneaii~ll~~~~~~~~~pdcr~~k~~l~~------~~~~~~vr~Fq~~f~kl~~dy----~Vd~VvI 67 (138)
T PF11215_consen 9 KGNEAIICLLSLDDGLFQLPDCRVRKFSLSD------DNSTEEVRKFQFTFAKLMEDY----KVDKVVI 67 (138)
T ss_pred ecCeEEEEEEecCCCceECCccceeEEEcCC------CccHHHHHHHHHHHHHHHHHc----CCCEEEE
Confidence 46789999998654321 1111112221 112577888998888877775 6888887
No 41
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=44.69 E-value=37 Score=22.55 Aligned_cols=68 Identities=12% Similarity=0.161 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcccc-CCcceEEEeCCcccHHHHHHHHHHHHHhccchhhhhccCcEEEEecCCCcchhHHHHh
Q 030017 42 NKFFENVLQAFLKHVDF-NVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVL 116 (184)
Q Consensus 42 ~~ff~~i~~~l~~~~~~-~~v~~ivIaGPGf~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l 116 (184)
+++|+.+..++..--.. -+..+|-..||+|+-+-|-..+...-... ...++.+.+.+.....-|+.++
T Consensus 4 ~~~~~~i~~~l~~~~~V~lDF~gv~~~~ssFl~eafg~l~~~~~~~~-------~~~~l~~~~~~~~~~~~I~~vi 72 (74)
T PF14213_consen 4 ERLRDEIEPALKEGEKVVLDFEGVESITSSFLNEAFGQLVREFGEEE-------IKKRLKFKNANESIKEMIKRVI 72 (74)
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcccccHHHHHHHHHHHHHHcCHHH-------HhheeEEecCCHHHHHHHHHHH
Confidence 56777777777643100 13455677899999999887666542111 1235666666555444444433
No 42
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=41.52 E-value=1.2e+02 Score=23.91 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=17.0
Q ss_pred eEEEeCCcccHHHHHHHHHHH
Q 030017 63 CAVIASPGFTKDQFHRHLLLE 83 (184)
Q Consensus 63 ~ivIaGPGf~k~~f~~yl~~~ 83 (184)
-+|+++||-=|.-+...|.+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 477888999999888877665
No 43
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=40.86 E-value=80 Score=25.96 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=29.8
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..- -..++.++.+++.+.-..+++++|||.|.|
T Consensus 13 v~~itlnrp~~~Nal-------~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g 57 (260)
T PRK07511 13 TLVLTLSNPGARNAL-------HPDMYAAGIEALNTAERDPSIRAVVLTGAG 57 (260)
T ss_pred EEEEEECCcccccCC-------CHHHHHHHHHHHHHhccCCCeEEEEEECCC
Confidence 346667778764331 134566666777666545689999999977
No 44
>PRK03011 butyrate kinase; Provisional
Probab=40.13 E-value=1.3e+02 Score=26.34 Aligned_cols=64 Identities=5% Similarity=0.022 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhccccC--CcceEEEeC-CcccHHHHHHHHHHHHHhccchhhhhccCcEEEEecCCCcchh
Q 030017 38 ESALNKFFENVLQAFLKHVDFN--VVRCAVIAS-PGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHS 111 (184)
Q Consensus 38 ~~~~~~ff~~i~~~l~~~~~~~--~v~~ivIaG-PGf~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~g 111 (184)
..+++.|..+++..+-.+...- ++++||++| -+. .+.|.+.+.+.+... ..+.+.....+..++
T Consensus 271 ~~ald~~~~~lak~I~~l~~~L~gdpD~IVlgGGI~~-~~~l~~~I~~~l~~~---------~pv~i~p~~~e~~A~ 337 (358)
T PRK03011 271 KLVYEAMAYQIAKEIGAMAAVLKGKVDAIVLTGGLAY-SKRLVERIKERVSFI---------APVIVYPGEDEMEAL 337 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCcccc-CHHHHHHHHHHHHhh---------CCeEEEeCCCHHHHH
Confidence 3567788888888777766543 799999974 443 455555565554322 135556655554443
No 45
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=38.92 E-value=1.8e+02 Score=24.36 Aligned_cols=40 Identities=18% Similarity=0.413 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHH-----------------HHhccccCCcceEEEeCCcccHHHHHH
Q 030017 39 SALNKFFENVLQA-----------------FLKHVDFNVVRCAVIASPGFTKDQFHR 78 (184)
Q Consensus 39 ~~~~~ff~~i~~~-----------------l~~~~~~~~v~~ivIaGPGf~k~~f~~ 78 (184)
..+++|+++.+++ +.+.+....++.|.+..|....+.+..
T Consensus 106 ~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~ 162 (263)
T CHL00200 106 YGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQK 162 (263)
T ss_pred hCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHH
Confidence 3567788776662 233344457888999999976655543
No 46
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=38.06 E-value=97 Score=25.35 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=27.0
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..++-+-|.|+..-. ..+++++.+++.+.-..+++++|||.|.|
T Consensus 10 v~~itlnrp~~~Nal~-------~~~~~~l~~a~~~~~~d~~vr~vVl~g~g 54 (248)
T PRK06072 10 YAIVTMSRPDKLNALN-------LEMRNEFISKLKQINADPKIRVVIVTGEG 54 (248)
T ss_pred EEEEEECCcccccCCC-------HHHHHHHHHHHHHHhcCCCeeEEEEECCC
Confidence 4567777787643311 23344444555544333579999999987
No 47
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=37.61 E-value=91 Score=25.60 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=27.0
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. ..++.++.+++...-..+++++|||.|.|
T Consensus 13 v~~itlnrp~~~Nal~-------~~~~~~l~~~l~~~~~d~~v~~vVl~g~g 57 (260)
T PRK05980 13 IALLTLNRPEKLNALN-------YALIDRLLARLDAIEVDESVRAVILTGAG 57 (260)
T ss_pred EEEEEECCcccccCCC-------HHHHHHHHHHHHHHhhCCCcEEEEEEeCC
Confidence 4566677787643311 23445555555543333579999999976
No 48
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=37.33 E-value=60 Score=23.40 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=27.5
Q ss_pred cCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 146 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 146 ~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
-+.|++..|.+...+++.+|..+-++|..+.
T Consensus 15 vkTGkvilG~k~tiK~lk~gkaKliiiAsN~ 45 (100)
T COG1911 15 VKTGKVILGSKRTIKSLKLGKAKLIIIASNC 45 (100)
T ss_pred HhcCCEEEehHHHHHHHHcCCCcEEEEecCC
Confidence 3468999999999999999999999998764
No 49
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.02 E-value=84 Score=26.85 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=35.7
Q ss_pred eEEEEEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHH
Q 030017 15 MTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFH 77 (184)
Q Consensus 15 ~~~~~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~ 77 (184)
.+.++.++....|--...-.++.+-|++.||+.+...+.+. .....|+..||++-.+|.
T Consensus 144 hIVvisSiaG~~~~P~~~~Y~ASK~Al~~f~etLR~El~~~----~~~i~i~V~PG~V~Te~~ 202 (282)
T KOG1205|consen 144 HIVVISSIAGKMPLPFRSIYSASKHALEGFFETLRQELIPL----GTIIIILVSPGPIETEFT 202 (282)
T ss_pred eEEEEeccccccCCCcccccchHHHHHHHHHHHHHHHhhcc----CceEEEEEecCceeeccc
Confidence 34444444433332211224556889999999877777664 232333699999998865
No 50
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=36.98 E-value=1.1e+02 Score=25.05 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=27.1
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..++-+-|.|+..-. ..+++++.+++.+.-..+++++|||.|.|
T Consensus 13 v~~itlnrp~~~Nal~-------~~~~~~l~~~l~~~~~d~~vr~vvl~g~g 57 (249)
T PRK05870 13 VALITVNDPDRRNAVT-------AEMSAQLRAAVAAAEADPDVHALVVTGAG 57 (249)
T ss_pred EEEEEEcCCCccCCCC-------HHHHHHHHHHHHHHhcCCCeeEEEEECCC
Confidence 4556667777643311 23444455555444334579999999988
No 51
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=36.93 E-value=29 Score=23.67 Aligned_cols=26 Identities=15% Similarity=-0.095 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhccccCCcceEEEeCCccc
Q 030017 43 KFFENVLQAFLKHVDFNVVRCAVIASPGFT 72 (184)
Q Consensus 43 ~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~ 72 (184)
.+++.+.+.+.++ ++.+|.|+.||.+
T Consensus 38 ~~~~~l~~~i~~~----~~~~i~Ig~pg~v 63 (99)
T smart00732 38 ADAARLKKLIKKY----QPDLIVIGLPLNM 63 (99)
T ss_pred hHHHHHHHHHHHh----CCCEEEEeCCcCC
Confidence 3455555555543 5889999999976
No 52
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=36.60 E-value=1.4e+02 Score=22.99 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=33.1
Q ss_pred HHHHHHHhccccCCcceEEEeCCcccHHHHHHHHHHHHHhccchhhhhccCcEEEEecCCCc
Q 030017 47 NVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGY 108 (184)
Q Consensus 47 ~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~ 108 (184)
++.+.+.+... .+...+|.+-||-=|+.|.+.+++...+. ...|+.++++.-.
T Consensus 10 ~~~~~~~~~a~-~~~pVlI~GE~GtGK~~lA~~IH~~s~r~--------~~pfi~vnc~~~~ 62 (168)
T PF00158_consen 10 RLREQAKRAAS-SDLPVLITGETGTGKELLARAIHNNSPRK--------NGPFISVNCAALP 62 (168)
T ss_dssp HHHHHHHHHTT-STS-EEEECSTTSSHHHHHHHHHHCSTTT--------TS-EEEEETTTS-
T ss_pred HHHHHHHHHhC-CCCCEEEEcCCCCcHHHHHHHHHHhhhcc--------cCCeEEEehhhhh
Confidence 33344444433 24556777778999999999998865443 2358888887643
No 53
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=36.20 E-value=1.1e+02 Score=25.13 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=28.7
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..- -..++.++.+++...-...++++|||.|.|
T Consensus 16 v~~i~lnrp~~~Nal-------~~~~~~el~~~l~~~~~d~~vr~vVltg~g 60 (260)
T PRK07827 16 VATLTLDSPHNRNAL-------SARLVAQLHDGLRAAAADPAVRAVVLTHTG 60 (260)
T ss_pred EEEEEEcCccccCCC-------CHHHHHHHHHHHHHHhcCCCeeEEEEEcCC
Confidence 456677777764331 134555666666554444578999999998
No 54
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=35.57 E-value=72 Score=27.89 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=42.0
Q ss_pred ceEEEeCCcccHHHHHHHHHHHHHhccchhhhhccCcEEEE-ecCCCcc-hhHHHHhcCchhHHHhhhhhHHHHHHHHHH
Q 030017 62 RCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILV-HTSSGYK-HSLREVLDAPNVMNMIKDTKAAQEVQALKD 139 (184)
Q Consensus 62 ~~ivIaGPGf~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v-~~s~~~~-~gl~E~l~~~~v~~~l~~~k~~~e~~~le~ 139 (184)
+.+|-+|-||+-..|..|+..+ +++ .+++.+ ...|+|. ..|..+..++...=+-.| +. ..+.+++
T Consensus 2 ~iLVTGGaGFIGsnfvr~~~~~-----~~d-----~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~D--I~-D~~~v~~ 68 (340)
T COG1088 2 KILVTGGAGFIGSNFVRYILNK-----HPD-----DHVVNLDKLTYAGNLENLADVEDSPRYRFVQGD--IC-DRELVDR 68 (340)
T ss_pred cEEEecCcchHHHHHHHHHHhc-----CCC-----ceEEEEecccccCCHHHHHhhhcCCCceEEecc--cc-CHHHHHH
Confidence 4588999999999999988776 221 134444 4666664 567777776532222222 22 2445666
Q ss_pred HHHH
Q 030017 140 FFNM 143 (184)
Q Consensus 140 f~~~ 143 (184)
++.+
T Consensus 69 ~~~~ 72 (340)
T COG1088 69 LFKE 72 (340)
T ss_pred HHHh
Confidence 6664
No 55
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=35.54 E-value=1.1e+02 Score=25.13 Aligned_cols=45 Identities=18% Similarity=0.142 Sum_probs=27.9
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..++-+-|.|+..- -..++.++.+++.+.-...++++|||.|.|
T Consensus 9 v~~itlnrp~~~Nal-------~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g 53 (255)
T PRK06563 9 VLLIGLDRPAKRNAF-------DSAMLDDLALALGEYEADDELRVAVLFAHG 53 (255)
T ss_pred EEEEEECCcccccCC-------CHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 456777777764331 123455555555554434578999999988
No 56
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=35.49 E-value=1.1e+02 Score=25.22 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=27.5
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..- -..++.++.+++.+.-...++++|||.|.|
T Consensus 14 v~~itlnrp~~~Nal-------~~~~~~~l~~~l~~~~~d~~vr~vVltg~g 58 (262)
T PRK05995 14 VATVTLNRPDVRNAF-------NETVIAELTAAFRALDADDSVRAVVLAGAG 58 (262)
T ss_pred EEEEEEcCcccccCC-------CHHHHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 456677777764331 123445555555544333579999999988
No 57
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=34.72 E-value=88 Score=25.32 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=39.2
Q ss_pred eEEEeCCcccHHHHHHHHHHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcC------chhHHHhhhhhHHHHHHH
Q 030017 63 CAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDA------PNVMNMIKDTKAAQEVQA 136 (184)
Q Consensus 63 ~ivIaGPGf~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~------~~v~~~l~~~k~~~e~~~ 136 (184)
-.|++|||-=|---= .++..+ +-.+|.|.|.. |++-+.+ ..+++.+++=+++-....
T Consensus 11 ifVlGGPGsgKgTqC----~kiv~k-----------y~ftHlSaGdL--LR~E~~~~gse~g~~I~~~i~~G~iVP~ei~ 73 (195)
T KOG3079|consen 11 IFVLGGPGSGKGTQC----EKIVEK-----------YGFTHLSAGDL--LRAEIASAGSERGALIKEIIKNGDLVPVEIT 73 (195)
T ss_pred EEEEcCCCCCcchHH----HHHHHH-----------cCceeecHHHH--HHHHHccccChHHHHHHHHHHcCCcCcHHHH
Confidence 478999997775432 232221 23567888776 6766666 234455555555555555
Q ss_pred HHHHHHHhhcC
Q 030017 137 LKDFFNMLTND 147 (184)
Q Consensus 137 le~f~~~l~~~ 147 (184)
++=+.+.|...
T Consensus 74 ~~LL~~am~~~ 84 (195)
T KOG3079|consen 74 LSLLEEAMRSS 84 (195)
T ss_pred HHHHHHHHHhc
Confidence 55555555443
No 58
>PF09290 AcetDehyd-dimer: Prokaryotic acetaldehyde dehydrogenase, dimerisation; InterPro: IPR015426 This C-terminal domain is found in prokaryotic acetaldehyde dehydrogenases, it adopts a structure consisting of an alpha-beta-alpha-beta(3) core, which mediates dimerisation of the protein []. The acetaldehyde dehydrogenase family of bacterial enzymes catalyses the formation of acetyl-CoA from acetaldehyde in the 3-hydroxyphenylpropinoate degradation pathway. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate [].; GO: 0008774 acetaldehyde dehydrogenase (acetylating) activity, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1NVM_F.
Probab=34.38 E-value=76 Score=24.25 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 38 ESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 38 ~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
...+++|......+|.+.-.-.+.|+||+..|.
T Consensus 38 R~NIDEft~TT~~ai~~vgGa~~~KaIiilNPA 70 (137)
T PF09290_consen 38 RANIDEFTETTARAIEQVGGAKRGKAIIILNPA 70 (137)
T ss_dssp HTTHHHHHHHHHHHHHHTT--SSEEEEEEEE--
T ss_pred hhhHHHHHHHHHHHHHHhcCcccceeEEEecCC
Confidence 356899999999999998877789999999998
No 59
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.33 E-value=64 Score=29.72 Aligned_cols=61 Identities=26% Similarity=0.238 Sum_probs=35.7
Q ss_pred HHHHHHHHHhccccC-CcceEEEeCCcccHHHHH-HHHH----HHHHhcc-chhhhhccCcEEEEecCCCc
Q 030017 45 FENVLQAFLKHVDFN-VVRCAVIASPGFTKDQFH-RHLL----LEAERRQ-LRPIIENKSRIILVHTSSGY 108 (184)
Q Consensus 45 f~~i~~~l~~~~~~~-~v~~ivIaGPGf~k~~f~-~yl~----~~~~~~~-~~~l~~~~~k~~~v~~s~~~ 108 (184)
=.+|++++.+++... -+..+=||||||+.--+. +|+. +-+.+.+ .|.+. .+++ +||-|+..
T Consensus 131 P~~va~~l~~~lP~se~vEk~~iagpGFiNv~Ls~d~~~~~i~nll~~GV~~P~l~--~Krv-lVDFSSPN 198 (656)
T KOG4426|consen 131 PRDVAQELQKHLPTSEMVEKCEIAGPGFINVFLSKDYMSKQISNLLVNGVKLPTLS--VKRV-LVDFSSPN 198 (656)
T ss_pred cHHHHHHHHhhCCchhhhhhhcccCCceEEEEechHHHHHHHHHHHHcCCCCcccc--eeeE-EEecCCCc
Confidence 357899998887532 366788999998753332 3444 3344333 34442 2344 56666554
No 60
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=34.19 E-value=99 Score=28.09 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=31.8
Q ss_pred EEEeCCcccHHHHHH-------HHHHHHHh-------ccchhhhhccCcEEEEecCCCcchhHHHHhcC
Q 030017 64 AVIASPGFTKDQFHR-------HLLLEAER-------RQLRPIIENKSRIILVHTSSGYKHSLREVLDA 118 (184)
Q Consensus 64 ivIaGPGf~k~~f~~-------yl~~~~~~-------~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~ 118 (184)
++||||+|---.|-. ++.+++.- ..++.+..=+++++++.++.. -.|+++.|..
T Consensus 79 v~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~My~ENpgvd~yk~~vyIv~t~~s-a~gmr~al~~ 146 (431)
T TIGR01918 79 IFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSMYVENPGVDMFKKDVYVMITGDS-AAGMRKDLPA 146 (431)
T ss_pred EEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEecccChHHHHHhhCcEEEECCcc-hhhHHHHHHH
Confidence 788999987666632 33332211 112333333456788888877 6788887653
No 61
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=34.17 E-value=33 Score=26.73 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=18.3
Q ss_pred HHHHHHHhccCccEEEeecC
Q 030017 156 KHVEVAHERMAVQTLLITDD 175 (184)
Q Consensus 156 ~eV~~A~e~GAVetLLisD~ 175 (184)
..|++|.++||+..||-||-
T Consensus 55 ~Kv~~A~~~GA~GviIYsDP 74 (153)
T cd02131 55 YKLSLLEEAGFGGVLLYVDP 74 (153)
T ss_pred HHHHHHHHCCCeEEEEecCh
Confidence 57999999999999999984
No 62
>PRK12408 glucokinase; Provisional
Probab=34.06 E-value=99 Score=26.61 Aligned_cols=34 Identities=18% Similarity=0.029 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhccccCCcce-EEEeCCcccH
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVRC-AVIASPGFTK 73 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~~-ivIaGPGf~k 73 (184)
+.++.|.+.++..+.......++.. |||+| |...
T Consensus 250 ~~~~~~~~~La~~i~nl~~~ldPe~GIvIGG-GIs~ 284 (336)
T PRK12408 250 EALQVFCGFLGSVVGDMALAYGARGGVYLAG-GILP 284 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCceEEEEC-chhH
Confidence 4678888888888888777778888 99999 6653
No 63
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=33.97 E-value=1.2e+02 Score=25.27 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=27.8
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+=|.|+..-. ..++.++.+++.+.-...++++|||.|.|
T Consensus 18 v~~itlnrp~~~Nal~-------~~~~~~l~~al~~~~~d~~vrvvVltg~g 62 (275)
T PLN02664 18 VFHLNLNRPSQRNALS-------LDFFTEFPKALSSLDQNPNVSVIILSGAG 62 (275)
T ss_pred EEEEEECCCCccCCCC-------HHHHHHHHHHHHHHHhCCCcEEEEEECCC
Confidence 4567777787643311 23444555555554333579999999988
No 64
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=33.57 E-value=85 Score=27.41 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCcceEEEeC
Q 030017 36 GYESALNKFFENVLQAFLKHVDFNVVRCAVIAS 68 (184)
Q Consensus 36 ~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaG 68 (184)
+|.....++|.++.+.+.+. +++.|||||
T Consensus 20 ~r~~d~~~~f~~~l~~a~~~----~vD~vliAG 48 (390)
T COG0420 20 SRLEDQKKAFDELLEIAKEE----KVDFVLIAG 48 (390)
T ss_pred cchHHHHHHHHHHHHHHHHc----cCCEEEEcc
Confidence 35666777777877777774 689999999
No 65
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=33.46 E-value=1.3e+02 Score=24.60 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=29.0
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..++-+-|.|+..=. ..+++++.+++.+.-+..++++||+.|.|
T Consensus 16 v~~itlnrp~~~Nal~-------~~~~~~L~~~l~~~~~d~~vr~vVl~g~g 60 (251)
T PRK06023 16 VQVIRFNRPEKKNAIT-------RAMYATMAKALKAADADDAIRAHVFLGTE 60 (251)
T ss_pred EEEEEecCcccccCCC-------HHHHHHHHHHHHHHhcCCCceEEEEECCC
Confidence 5567777787743311 34555566666555444679999998887
No 66
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=32.54 E-value=1.1e+02 Score=25.00 Aligned_cols=44 Identities=7% Similarity=0.099 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHHHHHHH
Q 030017 42 NKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAE 85 (184)
Q Consensus 42 ~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~~ 85 (184)
+.+++++.+.+.+.+....++.|+++|-|-.-..+.+|+.+.+.
T Consensus 176 ~~~~~~i~~~i~~~l~~~~~~~v~LtGG~a~ipgl~e~l~~~lg 219 (239)
T TIGR02529 176 KPVYQKMASIVKRHIEGQGVKDLYLVGGACSFSGFADVFEKQLG 219 (239)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECchhcchhHHHHHHHHhC
Confidence 44556666666666655567788888877555566677777653
No 67
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=32.38 E-value=1.3e+02 Score=25.01 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=26.9
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. ..++.++.+++...-...++++|||.|.|
T Consensus 23 v~~itlnrp~~~Nal~-------~~~~~~l~~al~~~~~d~~vr~vVltg~g 67 (273)
T PRK07396 23 IAKITINRPEVRNAFR-------PKTVKEMIDAFADARDDDNIGVIILTGAG 67 (273)
T ss_pred EEEEEEcCCcccCCCC-------HHHHHHHHHHHHHHhhCCCceEEEEEeCC
Confidence 3456667777643311 23445555555554333579999999876
No 68
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=32.32 E-value=1.1e+02 Score=21.37 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=46.9
Q ss_pred eEEEeCCcccHHHHHHHHHHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHH
Q 030017 63 CAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFN 142 (184)
Q Consensus 63 ~ivIaGPGf~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~ 142 (184)
-+++||-|..-.-+.+-+.+.+.+.+.+ +-+..++. ..+.+...+- .=+|--.++.-+.+-+++...
T Consensus 2 Il~~Cg~G~sTS~~~~ki~~~~~~~~~~--------~~v~~~~~---~~~~~~~~~~--Diil~~Pqv~~~~~~i~~~~~ 68 (96)
T cd05564 2 ILLVCSAGMSTSILVKKMKKAAEKRGID--------AEIEAVPE---SELEEYIDDA--DVVLLGPQVRYMLDEVKKKAA 68 (96)
T ss_pred EEEEcCCCchHHHHHHHHHHHHHHCCCc--------eEEEEecH---HHHHHhcCCC--CEEEEChhHHHHHHHHHHHhc
Confidence 5799999999887777777776665432 22333332 2233433332 445555555555544444332
Q ss_pred Hhhc---CCCcEEeCHHHHHHHHh
Q 030017 143 MLTN---DPTRACYGPKHVEVAHE 163 (184)
Q Consensus 143 ~l~~---~~~~v~YG~~eV~~A~e 163 (184)
.... --+...||.-+..++++
T Consensus 69 ~~~~pv~~I~~~~Y~~~dg~~il~ 92 (96)
T cd05564 69 EYGIPVAVIDMMDYGMMNGEKVLK 92 (96)
T ss_pred cCCCcEEEcChHhcccCCHHHHHH
Confidence 2111 12344677666665554
No 69
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=31.94 E-value=1.4e+02 Score=24.60 Aligned_cols=45 Identities=9% Similarity=0.095 Sum_probs=28.2
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..++-+-|.++..- -..++.++.+++.+.-..+++++|||.|.|
T Consensus 18 v~~itlnrp~~~Nal-------~~~~~~~l~~al~~~~~d~~vr~vvl~g~g 62 (261)
T PRK08138 18 VALLRLNRPEARNAL-------NMEVRQQLAEHFTELSEDPDIRAIVLTGGE 62 (261)
T ss_pred EEEEEEcCCcccCCC-------CHHHHHHHHHHHHHHhhCCCeeEEEEECCC
Confidence 456777778764331 134555555555554444679999999987
No 70
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=31.87 E-value=1.5e+02 Score=24.35 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=28.3
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+=|.++..-. ..+++++.+++.+.-...++++|||.|.|
T Consensus 12 v~~itlnrp~~~Nal~-------~~~~~~L~~~~~~~~~d~~vr~vVltg~g 56 (255)
T PRK09674 12 VLLLTLNRPEARNALN-------NALLTQLVNELEAAATDTSIGVCVITGNA 56 (255)
T ss_pred EEEEEEcCCCccCCCC-------HHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 4567777777643311 34555555666554434679999999987
No 71
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=31.59 E-value=1.4e+02 Score=24.50 Aligned_cols=45 Identities=13% Similarity=-0.021 Sum_probs=27.1
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+=|.|+..-. ..++.++.+++.+.-..+++++|||.|.|
T Consensus 17 v~~itlnrp~~~Nal~-------~~~~~~l~~~l~~~~~d~~vr~vVltg~g 61 (256)
T PRK06143 17 VATLTIRNAGSLNILG-------TPVILALTQALRWLAADPDVRVLVLRGAG 61 (256)
T ss_pred EEEEEEcCCcccCCCC-------HHHHHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 4566777777643311 23444555555554334679999999866
No 72
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=31.47 E-value=1.4e+02 Score=24.63 Aligned_cols=45 Identities=9% Similarity=0.186 Sum_probs=27.6
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..- -..+++++.+++.+.-...++++|||.|.|
T Consensus 15 v~~itlnrp~~~Nal-------~~~~~~~l~~al~~~~~d~~vr~vVltg~g 59 (263)
T PRK07799 15 TLIVTMNRPEARNAL-------STEMLRIMVDAWDRVDNDPDIRSCILTGAG 59 (263)
T ss_pred EEEEEECCCcccCCC-------CHHHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 456777778764331 123445555555554333579999999987
No 73
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=31.23 E-value=1.5e+02 Score=24.43 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=27.6
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..++-+-|.|+..-. ..++.++.+++.+.-..+++++|||.|.|
T Consensus 12 v~~itlnrp~~~Nal~-------~~~~~~l~~al~~~~~d~~vr~vVl~g~g 56 (256)
T TIGR03210 12 IAWIMINRPAKMNAFR-------GQTCDELIHALKDAGYDRQIGVIVLAGAG 56 (256)
T ss_pred EEEEEEcCCccccCCC-------HHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 3456777787643311 23445555556554344679999999866
No 74
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=31.03 E-value=1.4e+02 Score=24.62 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=27.4
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+.+|+-+-|.|+..-. ...+.++.+++.+.-..+++++|||.|.|
T Consensus 16 v~~itlnrp~~~Nal~-------~~~~~~l~~~l~~~~~d~~vr~vVl~g~g 60 (272)
T PRK06142 16 VAQVTLNRPGKGNAMN-------PAFWSELPEIFRWLDADPEVRAVVLSGSG 60 (272)
T ss_pred EEEEEEcCCCccCCCC-------HHHHHHHHHHHHHHhhCCCeEEEEEECCC
Confidence 4566777787743311 23444555555544333579999999988
No 75
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=30.99 E-value=95 Score=24.79 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCcceEEEeCCcc
Q 030017 38 ESALNKFFENVLQAFLKHVDFNVVRCAVIASPGF 71 (184)
Q Consensus 38 ~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf 71 (184)
..+.+.|+...-+.|.++ .+.-|+|.|||+
T Consensus 138 ~~~R~~F~~~l~~~L~~~----~~~~v~i~~~~y 167 (187)
T COG3172 138 SVQRQEFQNLLEQMLEEN----NIPFVVIEGEDY 167 (187)
T ss_pred HhHHHHHHHHHHHHHHHh----CCcEEEEcCCCH
Confidence 577899999888888776 577899999974
No 76
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=30.63 E-value=68 Score=27.50 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhcccc-------CCcceEEEeCCcccHHHHHHHHHHHHHh
Q 030017 39 SALNKFFENVLQAFLKHVDF-------NVVRCAVIASPGFTKDQFHRHLLLEAER 86 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~-------~~v~~ivIaGPGf~k~~f~~yl~~~~~~ 86 (184)
..+..|++++++.+.+.+++ ..++.|+++|.|---..+.+||.+++.-
T Consensus 246 ~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~ 300 (340)
T PF11104_consen 246 DALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGI 300 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCC
Confidence 44567777777777665532 3689999999998778888999888543
No 77
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=30.62 E-value=50 Score=18.48 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=9.9
Q ss_pred cccHHHHHHHHHHH
Q 030017 70 GFTKDQFHRHLLLE 83 (184)
Q Consensus 70 Gf~k~~f~~yl~~~ 83 (184)
|.++++|.+||...
T Consensus 16 Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 16 GLSKEEIREFLEFN 29 (30)
T ss_dssp T--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhC
Confidence 78899999998753
No 78
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=30.46 E-value=1.6e+02 Score=24.35 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=27.4
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+=|.++..- -..++.++.+++.+.-...++++|||.|.|
T Consensus 22 v~~itlnrp~~~Nal-------~~~~~~~l~~~l~~~~~d~~vr~vVltg~g 66 (268)
T PRK07327 22 VLEIVLNGPGALNAA-------DARMHRELADIWRDVDRDPDVRVVLIRGEG 66 (268)
T ss_pred EEEEEEcCCCccCCC-------CHHHHHHHHHHHHHhhhCCCceEEEEECCC
Confidence 355666667763331 134455555556554333579999999987
No 79
>PRK00279 adk adenylate kinase; Reviewed
Probab=30.40 E-value=2.7e+02 Score=21.90 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=18.2
Q ss_pred ceEEEeCCcccHHHHHHHHHHH
Q 030017 62 RCAVIASPGFTKDQFHRHLLLE 83 (184)
Q Consensus 62 ~~ivIaGPGf~k~~f~~yl~~~ 83 (184)
+-+|+++||--|.-+.+.|...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3578889999999998888766
No 80
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=30.02 E-value=1.5e+02 Score=24.21 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=29.1
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+.+|+-+-|.++..- -..++.++.+++.+.-..+++++|||.|.|
T Consensus 12 v~~itlnrp~~~Nal-------~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g 56 (255)
T PRK07260 12 LATLTLNRPEVSNGF-------NIPMCQEILEALRLAEEDPSVRFLLINANG 56 (255)
T ss_pred EEEEEeCCcccccCC-------CHHHHHHHHHHHHHHhcCCCceEEEEECCC
Confidence 456677777764331 124555666666655444689999999988
No 81
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=29.97 E-value=1.6e+02 Score=24.27 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=26.5
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ..+++++.+++.+.-..+++++|||.|.|
T Consensus 18 v~~itlnrp~~~Nal~-------~~~~~~l~~~l~~~~~d~~v~~vVltg~g 62 (262)
T PRK06144 18 IARITFNRPAARNAMT-------WAMYEGLAEICEAIAADPSIRAVVLRGAG 62 (262)
T ss_pred EEEEEecCCcccCCCC-------HHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 3456666677643311 23445555555554333579999999865
No 82
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=29.87 E-value=1.5e+02 Score=24.41 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=27.7
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+.+|+-+-|.++..- -..++.++.+++...-..+++++|||.|.|
T Consensus 13 v~~itlnrp~~~Nal-------~~~~~~el~~~l~~~~~d~~vr~vVltg~g 57 (259)
T TIGR01929 13 IAKITINRPQVRNAF-------RPLTVKEIIQALDDAREDPDIGVVILTGAG 57 (259)
T ss_pred EEEEEecCCccccCC-------CHHHHHHHHHHHHHHhhCCCeEEEEEEeCC
Confidence 456677777764331 134555555555554444579999999877
No 83
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=29.78 E-value=1.6e+02 Score=24.51 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=26.9
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..++-+-|.|+..- -..++.++.+++.+.-...++++|||.|.|
T Consensus 20 v~~itlnrp~~~Nal-------~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g 64 (276)
T PRK05864 20 IALITLNRPERMNSM-------AFDVMVPLKEALAEVSYDNSVRVVVLTGAG 64 (276)
T ss_pred EEEEEecCCccccCC-------CHHHHHHHHHHHHHHhcCCCceEEEEECCC
Confidence 456667777764331 123444555555544333579999999877
No 84
>PLN02674 adenylate kinase
Probab=29.71 E-value=2.7e+02 Score=23.14 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=18.8
Q ss_pred CcceEEEeCCcccHHHHHHHHHHH
Q 030017 60 VVRCAVIASPGFTKDQFHRHLLLE 83 (184)
Q Consensus 60 ~v~~ivIaGPGf~k~~f~~yl~~~ 83 (184)
..+.+|+++||-=|.-....|...
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~ 54 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDE 54 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456788999999998777777665
No 85
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=29.70 E-value=1.6e+02 Score=24.19 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=27.3
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. ..+++++.+++.+.-...++++|||.|.|
T Consensus 13 v~~itlnrp~~~Nal~-------~~~~~~l~~al~~~~~d~~vr~vvl~g~g 57 (262)
T PRK07509 13 IADVRLNRPDKMNALD-------FAMFEELIATIKRLKKDRGIRAVILSGEG 57 (262)
T ss_pred EEEEEecCcccccCCC-------HHHHHHHHHHHHHHhhCCCCeEEEEECCC
Confidence 4566777787753321 23444555555544333579999999877
No 86
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=29.40 E-value=1.6e+02 Score=24.06 Aligned_cols=45 Identities=4% Similarity=0.036 Sum_probs=27.3
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ..+++++.+++.+.-...++++|||.|.|
T Consensus 15 v~~i~ln~p~~~Nal~-------~~~~~~L~~~l~~~~~d~~vr~vvl~g~g 59 (249)
T PRK07110 15 IAQVTMQDRVNKNAFS-------DELCDQLHEAFDTIAQDPRYKVVILTGYP 59 (249)
T ss_pred EEEEEecCCCccCCCC-------HHHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 4556666677643311 34455555555554434579999999987
No 87
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=29.15 E-value=1.7e+02 Score=23.93 Aligned_cols=45 Identities=9% Similarity=0.041 Sum_probs=26.8
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ..++.++.+++.+.-..+++++|||.|.|
T Consensus 13 v~~itlnrp~~~Nal~-------~~~~~~l~~~l~~~~~d~~vr~vvl~g~g 57 (254)
T PRK08252 13 VLIITINRPEARNAVN-------AAVAQGLAAALDELDADPDLSVGILTGAG 57 (254)
T ss_pred EEEEEECCCcccCCCC-------HHHHHHHHHHHHHHhhCCCceEEEEECCC
Confidence 3556677777643311 23444455555544333579999999887
No 88
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.01 E-value=2.7e+02 Score=23.57 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=21.6
Q ss_pred CcceEEEeCCcccHHHHHHHHHHHHHh
Q 030017 60 VVRCAVIASPGFTKDQFHRHLLLEAER 86 (184)
Q Consensus 60 ~v~~ivIaGPGf~k~~f~~yl~~~~~~ 86 (184)
+=.+||+.||-|+|+-..+||+.++..
T Consensus 118 ~g~aiIv~Gnk~~Ke~aneflk~~l~~ 144 (293)
T COG4079 118 KGSAIIVFGNKFTKEVANEFLKDNLTK 144 (293)
T ss_pred CCceEEEECcHHHHHHHHHHHHhhccC
Confidence 435799999999999888888876544
No 89
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=29.01 E-value=1.8e+02 Score=23.93 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=27.7
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. ..++.++.+++.+.-..+++++|||.|.|
T Consensus 13 v~~itlnrp~~~Nal~-------~~~~~~l~~~l~~~~~d~~vr~vvltg~g 57 (254)
T PRK08259 13 VTTVILNRPEVRNAVD-------GPTAAALADAFRAFDADDAASVAVLWGAG 57 (254)
T ss_pred EEEEEecCCccccCCC-------HHHHHHHHHHHHHHhcCCCceEEEEECCC
Confidence 4566777777643311 23445555555554344679999999987
No 90
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=28.96 E-value=1.6e+02 Score=24.13 Aligned_cols=45 Identities=18% Similarity=0.179 Sum_probs=32.1
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|...- -..++.++.+++.+.-..+.+++|||.|.|
T Consensus 15 v~~itlnrp~~~Nal-------~~~~~~~l~~al~~~~~d~~vr~vvltg~g 59 (257)
T COG1024 15 IAVITLNRPEKLNAL-------NLEMLDELAEALDEAEADPDVRVVVLTGAG 59 (257)
T ss_pred EEEEEecCcccccCC-------CHHHHHHHHHHHHHHhhCCCeEEEEEECCC
Confidence 678888889885221 134666666666665544689999999998
No 91
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=28.95 E-value=2.6e+02 Score=21.31 Aligned_cols=41 Identities=7% Similarity=-0.035 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHHHHHHHhc
Q 030017 43 KFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERR 87 (184)
Q Consensus 43 ~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~~~~ 87 (184)
++.+.+.+-+.+ .++..|+|+|-+.--..+++.+..-+.+.
T Consensus 50 ~~~~~l~~~i~~----~kP~vI~v~g~~~~s~~l~~~v~~~v~~~ 90 (150)
T PF14639_consen 50 EDMERLKKFIEK----HKPDVIAVGGNSRESRKLYDDVRDIVEEL 90 (150)
T ss_dssp HHHHHHHHHHHH----H--SEEEE--SSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH----cCCeEEEEcCCChhHHHHHHHHHHHHHHh
Confidence 344444444444 37889999998877777777777765554
No 92
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=28.89 E-value=2.4e+02 Score=23.79 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=32.4
Q ss_pred EEEEEEeeCCCCCCCCcchhHHHH-HHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 18 TRSRIETSIPRKHGPAIAGYESAL-NKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 18 ~~~~i~~~ip~K~~~~~s~~~~~~-~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
.+.++.-+-|.|. .++ ..|++++-+.+.......+.+.|||-|.|
T Consensus 31 ~V~hv~lnRPsk~--------Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~G 76 (292)
T KOG1681|consen 31 FVYHVQLNRPSKL--------NALNKVFWREFKECFDSLDRDPDCRAIILSGAG 76 (292)
T ss_pred eEEEEEecCcchh--------hhhhHHHHHHHHHHHHhhccCCCceEEEEecCC
Confidence 4456666667662 333 36888888888777666688889999988
No 93
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=28.87 E-value=1.8e+02 Score=23.82 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=28.8
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..- -..++.++.+++.+.- .+++++|||.|.|
T Consensus 14 v~~itlnrp~~~Nal-------~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g 57 (262)
T PRK08140 14 VATLTLNRPDKLNSF-------TREMHRELREALDQVE-DDGARALLLTGAG 57 (262)
T ss_pred EEEEEecCCcccCCC-------CHHHHHHHHHHHHHhc-CCCceEEEEECCC
Confidence 345666778764331 1345666666666654 4679999999988
No 94
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=28.53 E-value=1.2e+02 Score=29.44 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=26.8
Q ss_pred HHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHHHHHH
Q 030017 45 FENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEA 84 (184)
Q Consensus 45 f~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~ 84 (184)
|++|.+++.+...-.+| +|+||||.-.++.+.+..+...
T Consensus 660 ~~~i~~~~~~~~~~~~v-gvlv~gp~~~~~~va~~~~~~~ 698 (722)
T PLN02844 660 FQDIFSKFPKETRGSDI-GVLVCGPETMKESVASMCRLKS 698 (722)
T ss_pred HHHHHHHhhhhccCCce-eEEEeCchHHHHHHHHHHHhcc
Confidence 44555555555444566 8999999999988887655543
No 95
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=28.37 E-value=3.1e+02 Score=25.84 Aligned_cols=73 Identities=14% Similarity=0.033 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhccccCC-cceEEEeCCccc-H--HHHHH-HHHHHHHhcc-chhhhhccCcEEEEecCCCcchh
Q 030017 38 ESALNKFFENVLQAFLKHVDFNV-VRCAVIASPGFT-K--DQFHR-HLLLEAERRQ-LRPIIENKSRIILVHTSSGYKHS 111 (184)
Q Consensus 38 ~~~~~~ff~~i~~~l~~~~~~~~-v~~ivIaGPGf~-k--~~f~~-yl~~~~~~~~-~~~l~~~~~k~~~v~~s~~~~~g 111 (184)
.+.++.|.+.++..+.......+ +.+|||+| |.. + +.|.+ .+.+....+. +..+.+.. .+.++.....+..|
T Consensus 246 ~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigG-GIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~i-pv~~i~~~~~~l~G 323 (638)
T PRK14101 246 LEAVECFCAILGTFAGNLALTLGALGGIYIGG-GVVPKLGELFTRSSFRARFEAKGRFEAYLANI-PTYLITAEYPAFLG 323 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeC-cHHHHHHHHcChHHHHHHHHhCCChHHHHhcC-CEEEEeCCChhHHH
Confidence 35677888888887777766555 78999987 443 2 22221 2333333333 44443333 46667667766666
Q ss_pred H
Q 030017 112 L 112 (184)
Q Consensus 112 l 112 (184)
.
T Consensus 324 a 324 (638)
T PRK14101 324 V 324 (638)
T ss_pred H
Confidence 5
No 96
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=28.37 E-value=77 Score=26.84 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=27.2
Q ss_pred cCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 146 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 146 ~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
+.|-.+.+|.++|..+++.|-+.-++|..|.
T Consensus 128 kkp~~LvsG~n~VtkaIekkKAkLVIIA~DV 158 (263)
T PTZ00222 128 KAPLAVVTGLQEVTRAIEKKQARMVVIANNV 158 (263)
T ss_pred CCCCeeccCHHHHHHHHHcCCceEEEEeCCC
Confidence 4455689999999999999999999999875
No 97
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=28.09 E-value=1.8e+02 Score=23.90 Aligned_cols=45 Identities=9% Similarity=0.016 Sum_probs=26.3
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ..++.++.+++.+.-..+++++|||.|.|
T Consensus 14 v~~itlnrp~~~Nal~-------~~~~~~l~~~l~~~~~d~~v~~vVl~g~g 58 (259)
T PRK06494 14 VTIVTLNRPEVMNALH-------LDAHFELEEVFDDFAADPEQWVAIVTGAG 58 (259)
T ss_pred EEEEEEcCccccCCCC-------HHHHHHHHHHHHHHhhCCCcEEEEEEcCC
Confidence 4566777777643311 23444455555544333579999999866
No 98
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=27.99 E-value=1.8e+02 Score=23.87 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=27.3
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..++-+-|.++..- -..++.++.+++.+. ..+++++||+.|.|
T Consensus 16 v~~itlnrp~~~Nal-------~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g 59 (260)
T PRK07659 16 VATIMLNRPEALNAL-------DEPMLKELLQALKEV-AESSAHIVVLRGNG 59 (260)
T ss_pred EEEEEeCCcccccCC-------CHHHHHHHHHHHHHh-cCCCeeEEEEECCC
Confidence 345666667764331 134555666666554 33679999999988
No 99
>PLN02600 enoyl-CoA hydratase
Probab=27.76 E-value=1.8e+02 Score=23.83 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=25.6
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCC
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASP 69 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGP 69 (184)
+.+|+-+-|.|+..-. ..++.++.+++.+.-.-.++++|||.|.
T Consensus 5 v~~itlnrp~~~Nal~-------~~~~~~l~~~~~~~~~d~~vr~vVl~g~ 48 (251)
T PLN02600 5 IVELRLDRPEAKNAIG-------KEMLRGLRSAFEKIQADASARVVMLRSS 48 (251)
T ss_pred EEEEEEcCCcccCCCC-------HHHHHHHHHHHHHHhhCCCceEEEEecC
Confidence 3466677787643311 2344455555544333357999999875
No 100
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=27.65 E-value=1.7e+02 Score=24.17 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=27.5
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+.+|+-+-|.++..- -..++.++.+++...-.-.++++|||.|.|
T Consensus 16 v~~itlnrp~~~Nal-------~~~~~~el~~al~~~~~d~~vr~vVl~g~g 60 (265)
T PRK05674 16 FATLWLSRADKNNAF-------NAQMIRELILALDQVQSDASLRFLLLRGRG 60 (265)
T ss_pred EEEEEecCcccccCC-------CHHHHHHHHHHHHHHhcCCCeeEEEEECCC
Confidence 456666777764331 123445555555554344579999999987
No 101
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=27.63 E-value=88 Score=25.80 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=28.2
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. ...++.++.+++.+.-.-+++++|||.|.|
T Consensus 13 v~~itlnrp~~~Nal~------~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g 58 (266)
T PRK09245 13 IVTLTMNRPETRNALS------DNDAVDALVAACAAINADRSVRAVILTGAG 58 (266)
T ss_pred EEEEEECCcccccCCC------hHHHHHHHHHHHHHHhcCCCceEEEEECCC
Confidence 4566777777632210 124555666666654444579999999987
No 102
>PLN02591 tryptophan synthase
Probab=27.53 E-value=3.6e+02 Score=22.43 Aligned_cols=40 Identities=13% Similarity=0.338 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHH-----------------HHhccccCCcceEEEeCCcccHHHHH
Q 030017 38 ESALNKFFENVLQA-----------------FLKHVDFNVVRCAVIASPGFTKDQFH 77 (184)
Q Consensus 38 ~~~~~~ff~~i~~~-----------------l~~~~~~~~v~~ivIaGPGf~k~~f~ 77 (184)
....++|+++..++ +.+.+....+..|.++.|-...+...
T Consensus 92 ~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~ 148 (250)
T PLN02591 92 KRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMK 148 (250)
T ss_pred HhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHH
Confidence 44678888877662 22223334566677777765554433
No 103
>PLN02888 enoyl-CoA hydratase
Probab=27.49 E-value=1.9e+02 Score=23.98 Aligned_cols=45 Identities=13% Similarity=0.243 Sum_probs=28.0
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..- -..++.++.+++.+.-.-.++++|||.|.|
T Consensus 20 v~~itlnrp~~~Nal-------~~~~~~~l~~al~~~~~d~~vr~vVltg~g 64 (265)
T PLN02888 20 IATITINRPKALNAL-------TRPMMVELAAAFKRLDEDDSVKVIILTGSG 64 (265)
T ss_pred EEEEEEcCCCcccCC-------CHHHHHHHHHHHHHHhhCCCceEEEEECCC
Confidence 345666777764331 134555566666554434579999999988
No 104
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=27.46 E-value=1.8e+02 Score=23.75 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=26.5
Q ss_pred EEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 20 SRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 20 ~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
..|+-+-|.|+..- -..++.++.+++.+.-. +++++|||.|.|
T Consensus 10 ~~itlnrp~~~Nal-------~~~~~~~l~~~l~~~~~-d~v~~vVltg~g 52 (256)
T TIGR02280 10 ARLTLNRPDKLNSF-------TAEMHLELREALERVER-DDARALMLTGAG 52 (256)
T ss_pred EEEEecCcccccCC-------CHHHHHHHHHHHHHHhc-CCcEEEEEECCC
Confidence 45566667764331 13455666666655433 349999999988
No 105
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=27.14 E-value=1.8e+02 Score=24.10 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=26.3
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..++-+-|.++..-. ..+++++.+++.+.-...++++|||.|.|
T Consensus 21 v~~itlnrp~~~Nal~-------~~~~~~l~~~l~~~~~d~~v~~vVl~g~g 65 (269)
T PRK06127 21 LGRITFNNPARHNAMS-------LDMWEALPQALAAAEDDDAIRVVVLTGAG 65 (269)
T ss_pred EEEEEecCCCccCCCC-------HHHHHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 4567777788754321 22334444444443333579999999976
No 106
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=26.97 E-value=1.7e+02 Score=24.36 Aligned_cols=45 Identities=9% Similarity=0.063 Sum_probs=26.8
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. ...+.++.+++.+.-...++++|||.|.|
T Consensus 18 va~itlnrp~~~Nal~-------~~m~~el~~al~~~~~d~~vr~vVl~g~g 62 (275)
T PRK09120 18 IAWVTLNRPEKRNAMS-------PTLNREMIDVLDALEFDDDAGVLVLTGAG 62 (275)
T ss_pred EEEEEecCcccccCCC-------HHHHHHHHHHHHHHHhCCCceEEEEEcCC
Confidence 4567777787643311 22344444444443333579999999987
No 107
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=26.93 E-value=1.9e+02 Score=23.84 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=27.9
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. ..++.++.+++.+.-..+++++|||.|.|
T Consensus 15 v~~itlnrp~~~Nal~-------~~~~~~l~~~l~~~~~d~~v~~vVl~g~g 59 (262)
T PRK07468 15 VATLTLNRPEKHNALS-------ARMIAELTTAARRLAADAAVRVVVLTGAG 59 (262)
T ss_pred EEEEEEcCcccccCCC-------HHHHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 4566777777643311 24455555555554333578999999987
No 108
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=26.92 E-value=82 Score=26.17 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHH
Q 030017 38 ESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQF 76 (184)
Q Consensus 38 ~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f 76 (184)
.-+...|.++..+.+.+.....++ .||++|.|+.-+.+
T Consensus 35 ~ysv~~f~~~a~~~i~~i~~rgk~-PIlvGGTglYi~al 72 (253)
T PF01715_consen 35 EYSVGDFQRDAREAIEDILARGKI-PILVGGTGLYIQAL 72 (253)
T ss_dssp ---HHHHHHHHHHHHHHHHHTT-E-EEEEES-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCe-EEEECChHHHHHHH
Confidence 455778999888888777655555 78999999655544
No 109
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=26.91 E-value=1.7e+02 Score=25.82 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=28.5
Q ss_pred EEEeCCcccHHHHHH-------HHHHHHHh-------ccchhhhhccCcEEEEecCCCcchhHHHHhc
Q 030017 64 AVIASPGFTKDQFHR-------HLLLEAER-------RQLRPIIENKSRIILVHTSSGYKHSLREVLD 117 (184)
Q Consensus 64 ivIaGPGf~k~~f~~-------yl~~~~~~-------~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~ 117 (184)
++||||+|=--.+-. ++.+++.- ..++.+..=+++++++.++.+ -.|+++.|.
T Consensus 83 ~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~~ENpgv~~yk~~~~Ivkt~~~-a~gm~~al~ 149 (349)
T PF07355_consen 83 VVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMYEENPGVEMYKKDVYIVKTKKS-AAGMRDALP 149 (349)
T ss_pred EEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEecccChhHHHHhhccEEEECCCc-cccHHHHHH
Confidence 788999987666632 23332221 112222222345777777444 567777654
No 110
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=26.91 E-value=1.9e+02 Score=23.77 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=26.5
Q ss_pred EEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 20 SRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 20 ~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
..|+-+-|.++..- -..++.++.+++.+.-...++++|||.|.|
T Consensus 15 ~~itlnrp~~~Nal-------~~~~~~~l~~al~~~~~d~~v~~vVl~g~g 58 (260)
T PRK07657 15 VKITLNRPRAANAL-------SLALLEELQNILTQINEEANVRVVILTGAG 58 (260)
T ss_pred EEEEEeCCcccCCC-------CHHHHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence 45666667764331 123445555555554333679999999976
No 111
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=26.81 E-value=1.8e+02 Score=20.27 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=39.3
Q ss_pred cceEEEeCCcccHHHHHHHHHHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHH
Q 030017 61 VRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDF 140 (184)
Q Consensus 61 v~~ivIaGPGf~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f 140 (184)
.+.+++||-|+.-.-+.+-+.+.+.+.+.+ +-+..++ ...+.+.+.+. +=+|--.++.-+.+.+++.
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~--------~~v~a~~---~~~~~~~~~~~--Dvill~pqi~~~~~~i~~~ 70 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVP--------VKIAAGS---YGAAGEKLDDA--DVVLLAPQVAYMLPDLKKE 70 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCc--------EEEEEec---HHHHHhhcCCC--CEEEECchHHHHHHHHHHH
Confidence 467899999999877777777776665432 2222322 23344444433 4455555555555555544
Q ss_pred HH
Q 030017 141 FN 142 (184)
Q Consensus 141 ~~ 142 (184)
..
T Consensus 71 ~~ 72 (95)
T TIGR00853 71 TD 72 (95)
T ss_pred hh
Confidence 43
No 112
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=26.77 E-value=93 Score=22.89 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=13.5
Q ss_pred ceEEEeCCcccHHHHHHH
Q 030017 62 RCAVIASPGFTKDQFHRH 79 (184)
Q Consensus 62 ~~ivIaGPGf~k~~f~~y 79 (184)
-+|++|||.-+.+++.+.
T Consensus 137 ~~V~~CGP~~m~~~vr~~ 154 (156)
T PF08030_consen 137 VAVFVCGPPSMVDDVRNA 154 (156)
T ss_dssp EEEEEES-HHHHHHHHHH
T ss_pred EEEEEcCcHHHHHHHHHH
Confidence 379999999888877654
No 113
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=26.75 E-value=2e+02 Score=23.92 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=27.2
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ...+.++.+++.+.-...++++|||.|.|
T Consensus 27 v~~itlnrp~~~Nal~-------~~~~~eL~~~l~~~~~d~~vr~vVltg~g 71 (277)
T PRK08258 27 VATITLNRPERKNPLT-------FESYAELRDLFRELVYADDVKAVVLTGAG 71 (277)
T ss_pred EEEEEeCCcccccCCC-------HHHHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 4566777777643311 22444555555554333679999999987
No 114
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=26.37 E-value=2e+02 Score=23.51 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=27.5
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..- -..++.++.+.+.+.-...++++|||.|.|
T Consensus 14 v~~itlnrp~~~Nal-------~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g 58 (257)
T PRK05862 14 VGLITLNRPKALNAL-------NDALMDELGAALAAFDADEGIGAIVITGSE 58 (257)
T ss_pred EEEEEEcCCcccCCC-------CHHHHHHHHHHHHHHhhCCCeeEEEEECCC
Confidence 456677777764331 133455555555554334579999999987
No 115
>PRK08321 naphthoate synthase; Validated
Probab=26.25 E-value=1.8e+02 Score=24.58 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=28.6
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ..++.++.+++.+.-...++++|||.|.|
T Consensus 35 va~itlnrP~~~Nal~-------~~~~~~l~~al~~~~~d~~vrvvVltg~g 79 (302)
T PRK08321 35 TVRIAFDRPEVRNAFR-------PHTVDELYRALDHARMSPDVGCVLLTGNG 79 (302)
T ss_pred EEEEEeCCcccccCCC-------HHHHHHHHHHHHHHhhCCCcEEEEEeCCC
Confidence 4567777787643311 34555566666554444689999999865
No 116
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=25.95 E-value=1.9e+02 Score=24.27 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=27.9
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..- -..++.++.+++...-...++++|||.|.|
T Consensus 14 v~~itlnrp~~~Nal-------~~~~~~~L~~al~~~~~d~~vr~vVltg~g 58 (296)
T PRK08260 14 IATITLNRPDKLNAF-------TVTMARELIEAFDAADADDAVRAVIVTGAG 58 (296)
T ss_pred EEEEEeCCCcccCCC-------CHHHHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 445666667764331 124555666666554444679999999987
No 117
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=25.78 E-value=76 Score=26.05 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=18.5
Q ss_pred HHHHHHHhccCccEEEeecC
Q 030017 156 KHVEVAHERMAVQTLLITDD 175 (184)
Q Consensus 156 ~eV~~A~e~GAVetLLisD~ 175 (184)
+.+..|.+.||+-.|+++|-
T Consensus 86 ~Kv~~A~~~GA~gVIiy~Dp 105 (220)
T cd02121 86 LKVKNAQLAGAVGVIIYSDP 105 (220)
T ss_pred HHHHHHHHcCCEEEEEEeCc
Confidence 68999999999999999985
No 118
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=25.77 E-value=2.1e+02 Score=23.59 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=27.0
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..++-+-|.|+..=. ..++.++.+++.+.-..+++++|||-|.|
T Consensus 16 v~~itlnrp~~~Nal~-------~~~~~~L~~~l~~~~~d~~vr~vVl~g~g 60 (272)
T PRK06210 16 VAVITLNRPDRLNAWT-------PVMEAEVYAAMDRAEADPAVRVIVLTGAG 60 (272)
T ss_pred EEEEEeCCcccccCCC-------HHHHHHHHHHHHHhccCCCeeEEEEECCC
Confidence 4466667777643311 23344555555554333579999999987
No 119
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=25.74 E-value=2.1e+02 Score=24.27 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=27.7
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+=|.|+..=. ...+.++.+++.+.-.-.++++|||.|-|
T Consensus 15 Va~ItLnrP~~~NAl~-------~~~~~eL~~al~~~~~d~~vrvvVLtG~G 59 (298)
T PRK12478 15 VATITLNRPEQLNTIV-------PPMPDEIEAAIGLAERDQDIKVIVLRGAG 59 (298)
T ss_pred EEEEEecCCcccCCCC-------HHHHHHHHHHHHHHhcCCCceEEEEECCC
Confidence 4567777788754411 23344455555544333689999999987
No 120
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=25.22 E-value=3.1e+02 Score=22.60 Aligned_cols=56 Identities=9% Similarity=0.143 Sum_probs=27.9
Q ss_pred CcceEEEeCCcccHHHHHHHHHHHHHhccchhhh-----hcc--CcEEEEecCCCcchhHHHHhcCch
Q 030017 60 VVRCAVIASPGFTKDQFHRHLLLEAERRQLRPII-----ENK--SRIILVHTSSGYKHSLREVLDAPN 120 (184)
Q Consensus 60 ~v~~ivIaGPGf~k~~f~~yl~~~~~~~~~~~l~-----~~~--~k~~~v~~s~~~~~gl~E~l~~~~ 120 (184)
.+++||++|+..-.+.+..+.... .|-+. ... -..+..|-..++..+.+.++++|-
T Consensus 56 ~vDGiI~~s~~~~~~~l~~~~~~~-----iPvV~~~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~~Gh 118 (279)
T PF00532_consen 56 RVDGIILASSENDDEELRRLIKSG-----IPVVLIDRYIDNPEGVPSVYIDNYEAGYEATEYLIKKGH 118 (279)
T ss_dssp TSSEEEEESSSCTCHHHHHHHHTT-----SEEEEESS-SCTTCTSCEEEEEHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEecccCChHHHHHHHHcC-----CCEEEEEeccCCcccCCEEEEcchHHHHHHHHHHHhccc
Confidence 688888887765544444444331 11100 000 012334444444567777777774
No 121
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=25.17 E-value=2.2e+02 Score=23.48 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=26.8
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ...+.++.+++.+.-...++++|||.|.|
T Consensus 14 va~Itlnrp~~~Nal~-------~~~~~~l~~~l~~~~~d~~vr~vVltg~g 58 (258)
T PRK06190 14 VRTLTLNRPEARNALS-------AALRRALFAALAEADADDDVDVVVLTGAD 58 (258)
T ss_pred EEEEEEcCCcccCCCC-------HHHHHHHHHHHHHHhhCCCceEEEEECCC
Confidence 3466777787643311 23444444455444333579999999987
No 122
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=25.14 E-value=2.1e+02 Score=23.25 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=26.5
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. ..++.++.+++.+.-+ +++++|||.|.|
T Consensus 10 v~~itlnrp~~~Nal~-------~~~~~~l~~al~~~~~-~~vr~vvl~g~g 53 (243)
T PRK07854 10 VLTIELQRPERRNALN-------AELCEELREAVRKAVD-ESARAIVLTGQG 53 (243)
T ss_pred EEEEEeCCCccccCCC-------HHHHHHHHHHHHHHhc-CCceEEEEECCC
Confidence 4567777787754311 2344444444544322 479999999988
No 123
>PRK08139 enoyl-CoA hydratase; Validated
Probab=25.12 E-value=2e+02 Score=23.82 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=26.2
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. . ..+.++.+++.+.-..+++++|||.|.|
T Consensus 21 v~~itlnrp~~~Nal~---~----~~~~~l~~~l~~~~~d~~vr~vVltg~g 65 (266)
T PRK08139 21 VATLTLNRPQAFNALS---E----AMLAALQAALDAIAADPSVRVVVLAAAG 65 (266)
T ss_pred EEEEEeCCcccccCCC---H----HHHHHHHHHHHHHhcCCCeeEEEEecCC
Confidence 3556677777643311 2 3334444444443333579999999988
No 124
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=25.03 E-value=2e+02 Score=24.31 Aligned_cols=45 Identities=16% Similarity=0.060 Sum_probs=27.4
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. ...+.++.+++.+.-..+++++|||.|.|
T Consensus 20 V~~Itlnrp~~~Nal~-------~~m~~eL~~al~~~~~d~~vrvvVl~G~G 64 (302)
T PRK08272 20 IARITLNRPEKGNAIT-------ADTPLELRAAVERADLDPGVHVILVSGAG 64 (302)
T ss_pred EEEEEecCccccCCCC-------HHHHHHHHHHHHHHhhCCCceEEEEEcCC
Confidence 5567777777643311 23344555555554333579999999987
No 125
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=24.68 E-value=2.8e+02 Score=24.44 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhccc-cCCcceEEEeCCcccHHHHHHHHHHHHHhc
Q 030017 40 ALNKFFENVLQAFLKHVD-FNVVRCAVIASPGFTKDQFHRHLLLEAERR 87 (184)
Q Consensus 40 ~~~~ff~~i~~~l~~~~~-~~~v~~ivIaGPGf~k~~f~~yl~~~~~~~ 87 (184)
+++.+.+-|.+.+..... ..+++.|++.|--.-..+|.+.+.+++.+.
T Consensus 239 a~ea~~E~i~k~V~~l~~~~~~~~~IilSGr~~~~~~~~~~l~~~l~~~ 287 (343)
T PF07318_consen 239 AWEAMIESIVKAVASLLASVPDPDEIILSGRFSRIPEFRKKLEDRLEDY 287 (343)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCEEEEeccccccHHHHHHHHHHHHhh
Confidence 455566656665544432 237889999999888889998888887654
No 126
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=23.76 E-value=84 Score=25.09 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=18.8
Q ss_pred HHHHHHHHhccCccEEEeecC
Q 030017 155 PKHVEVAHERMAVQTLLITDD 175 (184)
Q Consensus 155 ~~eV~~A~e~GAVetLLisD~ 175 (184)
-+.|..|.+.||+-.|+.+|.
T Consensus 69 ~~Kv~~A~~~GA~gvIiy~Dp 89 (183)
T cd02128 69 AEKVANAEKLGAVGVLIYPDP 89 (183)
T ss_pred HHHHHHHHHCCCEEEEEecCH
Confidence 367999999999999999994
No 127
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=23.63 E-value=2.4e+02 Score=23.72 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=27.5
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+.+|+-+-|.++..-. ...++++.+++.+.-+-.++++|||-|.|
T Consensus 14 Va~ItlnrP~~~Nal~-------~~~~~eL~~~l~~~~~d~~vrvvVltg~G 58 (288)
T PRK08290 14 IARITLNRPEARNAQN-------RQMLYELDAAFRRAEADDAVRVIVLAGAG 58 (288)
T ss_pred EEEEEecCccccCCCC-------HHHHHHHHHHHHHHhcCCCeeEEEEECCC
Confidence 4567777787643311 23444555555554444679999998887
No 128
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=23.44 E-value=2.4e+02 Score=23.09 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=26.2
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+.+|+-+-|.|+..-. ..++.++.+++.+. + .++++|||.|.|
T Consensus 12 v~~itlnrp~~~Nal~-------~~~~~~l~~al~~~-~-~~vr~vvltg~g 54 (255)
T PRK08150 12 VATIGLNRPAKRNALN-------DGLIAALRAAFARL-P-EGVRAVVLHGEG 54 (255)
T ss_pred EEEEEEcCCccccCCC-------HHHHHHHHHHHHHh-h-cCCeEEEEECCC
Confidence 4566777777643311 23444444445442 3 689999999988
No 129
>PRK00292 glk glucokinase; Provisional
Probab=23.36 E-value=2.4e+02 Score=23.74 Aligned_cols=34 Identities=15% Similarity=-0.129 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhccccCCcc-eEEEeCCcc
Q 030017 38 ESALNKFFENVLQAFLKHVDFNVVR-CAVIASPGF 71 (184)
Q Consensus 38 ~~~~~~ff~~i~~~l~~~~~~~~v~-~ivIaGPGf 71 (184)
.+.++.|.+.++..+....+..++. +|||+|..-
T Consensus 231 ~~~~~~~~~~lg~~i~~l~~~~~P~~~vvi~Gg~~ 265 (316)
T PRK00292 231 RRTLSLFCVILGRVAGNLALTLGARGGVYIAGGIV 265 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEEeCchH
Confidence 3567788888888888887777898 899999554
No 130
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=23.24 E-value=2e+02 Score=24.35 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHH-----------------HHHhccccCCcceEEEeCCcccHHHHHHHHHHHHHhccchhhhhccCcE
Q 030017 37 YESALNKFFENVLQ-----------------AFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRI 99 (184)
Q Consensus 37 ~~~~~~~ff~~i~~-----------------~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~~~~~~~~l~~~~~k~ 99 (184)
+...+++|+++..+ .+.+.+..+.++.|.++.|....+......... +-|
T Consensus 107 ~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a-------------~GF 173 (265)
T COG0159 107 FNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAA-------------SGF 173 (265)
T ss_pred HHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC-------------CCc
Confidence 34557788888755 345555567899999999998876665433322 223
Q ss_pred EEEecCCCcchhHHHHhcCc
Q 030017 100 ILVHTSSGYKHSLREVLDAP 119 (184)
Q Consensus 100 ~~v~~s~~~~~gl~E~l~~~ 119 (184)
+ .=+|..|.+|.+......
T Consensus 174 i-Y~vs~~GvTG~~~~~~~~ 192 (265)
T COG0159 174 I-YYVSRMGVTGARNPVSAD 192 (265)
T ss_pred E-EEEecccccCCCcccchh
Confidence 2 234555667766554433
No 131
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=23.01 E-value=2.5e+02 Score=22.93 Aligned_cols=45 Identities=7% Similarity=0.093 Sum_probs=26.4
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+=|.++..-. ..++.++.+++.+.-...++++|||.|.|
T Consensus 14 v~~itlnrp~~~Nal~-------~~~~~~l~~~~~~~~~d~~v~~vvl~g~g 58 (260)
T PRK05809 14 IAVVTINRPKALNALN-------SETLKELDTVLDDIENDDNVYAVILTGAG 58 (260)
T ss_pred EEEEEECCCcccCCCC-------HHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 4566777777543311 23444555555444334579999999977
No 132
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=22.91 E-value=2.5e+02 Score=23.14 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=25.9
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCC
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASP 69 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGP 69 (184)
+..|+-+-|.++..-. ..++.++.+++.+.-. +++++|||.|.
T Consensus 14 v~~itlnrp~~~Nal~-------~~~~~~l~~al~~~~~-d~v~~vvltg~ 56 (261)
T PRK11423 14 IATITFNNPAKRNALS-------KVLIDDLMQALSDLNR-PEIRVVILRAP 56 (261)
T ss_pred EEEEEEcCccccCCCC-------HHHHHHHHHHHHHHhc-CCceEEEEECC
Confidence 3456777787643311 3455556666655433 34999999875
No 133
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=22.83 E-value=65 Score=31.06 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=23.6
Q ss_pred CCcceEEEeCCcccHHHHHHHHHHHHHhc
Q 030017 59 NVVRCAVIASPGFTKDQFHRHLLLEAERR 87 (184)
Q Consensus 59 ~~v~~ivIaGPGf~k~~f~~yl~~~~~~~ 87 (184)
.++..++++-||..|.+|.+|....+.+.
T Consensus 481 GDinvLL~GDPGTaKSQFLKY~eK~s~RA 509 (854)
T KOG0477|consen 481 GDINVLLLGDPGTAKSQFLKYAEKTSPRA 509 (854)
T ss_pred cceeEEEecCCCccHHHHHHHHHhcCcce
Confidence 45677899999999999999998765443
No 134
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=22.58 E-value=1.4e+02 Score=19.38 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=26.1
Q ss_pred EEeCCeEEEEEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 030017 10 LVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAF 52 (184)
Q Consensus 10 ~l~~~~~~~~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l 52 (184)
++|.+||+.+-++....+. ....++..+++.+.+
T Consensus 39 ~vR~SgTEP~iRv~~Ea~~---------~~~~~~~~~~i~~~i 72 (73)
T PF00408_consen 39 LVRPSGTEPKIRVYVEAPD---------EEELEEIAEEIAEAI 72 (73)
T ss_dssp EEEEESSSSEEEEEEEESS---------HHHHHHHHHHHHHHH
T ss_pred EEECCCCCceEEEEEEeCC---------HHHHHHHHHHHHHhh
Confidence 3999999999888887753 566777777777665
No 135
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=22.36 E-value=2.6e+02 Score=22.73 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=26.1
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..++-+-|.++..-. ..+++++.+++.+.-...++++|||.|.|
T Consensus 15 v~~i~lnrp~~~Nal~-------~~~~~~l~~~l~~~~~d~~v~~vVl~g~g 59 (259)
T PRK06688 15 VLTITINRPDKKNALT-------AAMYQALADALEAAATDPAVRVVVLTGAG 59 (259)
T ss_pred EEEEEecCcccccCCC-------HHHHHHHHHHHHHHhcCCCceEEEEECCC
Confidence 3455666676543311 23445555555554333579999999877
No 136
>PLN02286 arginine-tRNA ligase
Probab=21.92 E-value=81 Score=29.54 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=20.0
Q ss_pred HHHHHHHHhccccCC-cceEEEeCCcccH
Q 030017 46 ENVLQAFLKHVDFNV-VRCAVIASPGFTK 73 (184)
Q Consensus 46 ~~i~~~l~~~~~~~~-v~~ivIaGPGf~k 73 (184)
.+|++.+.+.+.... +..|-++||||+.
T Consensus 59 ~~iA~~i~~~l~~~~~i~~v~vagpGfiN 87 (576)
T PLN02286 59 RAVAQAIVKNLPASEMIESTSVAGPGFVN 87 (576)
T ss_pred HHHHHHHHHhCccccceeeEEEcCCCeEE
Confidence 567777777664332 6789999999764
No 137
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=21.84 E-value=66 Score=27.29 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=28.1
Q ss_pred hcCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 145 TNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 145 ~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
++.|-.+.||..+|..+++.|-+.-++|..|.
T Consensus 127 ~kkp~~vk~Gin~VtklIekkKAkLVIIA~DV 158 (266)
T PTZ00365 127 SKKPFMLKYGLNHVTDLVEYKKAKLVVIAHDV 158 (266)
T ss_pred CCCchHHHhhhHHHHHHHHhCCccEEEEeCCC
Confidence 35566788999999999999999999999875
No 138
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=21.33 E-value=1.1e+02 Score=24.82 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhccccC-CcceEEEeCCc
Q 030017 39 SALNKFFENVLQAFLKHVDFN-VVRCAVIASPG 70 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~-~v~~ivIaGPG 70 (184)
.-+++==..|++.+.+.+... ..+-+|+||||
T Consensus 27 ~LMEnAG~aVa~~i~~~~~~~~~~~v~vlcG~G 59 (203)
T COG0062 27 ILMENAGLAVARAILREYPLGRARRVLVLCGPG 59 (203)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCEEEEEECCC
Confidence 334444556777777776432 34579999999
No 139
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=21.22 E-value=2.9e+02 Score=19.06 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=15.0
Q ss_pred CCcceEEEeCCcccHHHHHH
Q 030017 59 NVVRCAVIASPGFTKDQFHR 78 (184)
Q Consensus 59 ~~v~~ivIaGPGf~k~~f~~ 78 (184)
.+++.|+|+.|....-+...
T Consensus 61 ~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 61 EDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp TTESEEEEESSGGGHHHHHH
T ss_pred hcCCEEEEecCCcchHHHHH
Confidence 47999999999966655543
No 140
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=21.15 E-value=3.4e+02 Score=25.76 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=61.1
Q ss_pred CCcceEEEeCCcccHHHHHHHH-HHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHH
Q 030017 59 NVVRCAVIASPGFTKDQFHRHL-LLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQAL 137 (184)
Q Consensus 59 ~~v~~ivIaGPGf~k~~f~~yl-~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~l 137 (184)
.+++.|++.+-+ ++..|. ..+++.+ ++.. +-++++.|+. +..-+.++++.=.+ +.+=-..+-+++=++
T Consensus 273 ~~p~~i~l~~~~----E~~~~~i~~el~~~-~~~~---~~~~~igdVr--D~~~~~~~~~~~kv-d~VfHAAA~KHVPl~ 341 (588)
T COG1086 273 FNPKEIILFSRD----EYKLYLIDMELREK-FPEL---KLRFYIGDVR--DRDRVERAMEGHKV-DIVFHAAALKHVPLV 341 (588)
T ss_pred cCCCEEEEecCc----hHHHHHHHHHHHhh-CCCc---ceEEEecccc--cHHHHHHHHhcCCC-ceEEEhhhhccCcch
Confidence 478999999988 666653 3444433 1211 1134455544 35667888777211 233334455666666
Q ss_pred HHHHHHhhcCCCcEEeCHHHHHHHHhccCccEE-EeecC
Q 030017 138 KDFFNMLTNDPTRACYGPKHVEVAHERMAVQTL-LITDD 175 (184)
Q Consensus 138 e~f~~~l~~~~~~v~YG~~eV~~A~e~GAVetL-LisD~ 175 (184)
|..-.+--++ + ..|-.+|.+|+...-|++. +||.|
T Consensus 342 E~nP~Eai~t-N--V~GT~nv~~aa~~~~V~~~V~iSTD 377 (588)
T COG1086 342 EYNPEEAIKT-N--VLGTENVAEAAIKNGVKKFVLISTD 377 (588)
T ss_pred hcCHHHHHHH-h--hHhHHHHHHHHHHhCCCEEEEEecC
Confidence 6665554443 2 7899999999998888874 44433
No 141
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=21.08 E-value=2.1e+02 Score=25.51 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhccchh--hhhccCcEEEEecCCCcchhHHHHhcCch
Q 030017 74 DQFHRHLLLEAERRQLRP--IIENKSRIILVHTSSGYKHSLREVLDAPN 120 (184)
Q Consensus 74 ~~f~~yl~~~~~~~~~~~--l~~~~~k~~~v~~s~~~~~gl~E~l~~~~ 120 (184)
..|.+||.+++.-.+.+. ......+.++.-.|.||..+++=+++.++
T Consensus 263 ~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd 311 (411)
T PRK10439 263 ADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPE 311 (411)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcc
Confidence 467777777654432211 11234467788999999999999999874
No 142
>PRK06851 hypothetical protein; Provisional
Probab=20.79 E-value=1.7e+02 Score=25.90 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHHHHHHHhccc
Q 030017 40 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQL 89 (184)
Q Consensus 40 ~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~~~~~~ 89 (184)
..-.||..+.+.+.+. -+|-++||--|.-+...+...+..++.
T Consensus 201 G~~s~~~~l~~~~~~~-------~~i~G~pG~GKstl~~~i~~~a~~~G~ 243 (367)
T PRK06851 201 GAVDFVPSLTEGVKNR-------YFLKGRPGTGKSTMLKKIAKAAEERGF 243 (367)
T ss_pred cHHhhHHhHhcccceE-------EEEeCCCCCcHHHHHHHHHHHHHhCCC
Confidence 3456777766433332 377788999999999988888766543
No 143
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=20.45 E-value=1.9e+02 Score=23.31 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=15.7
Q ss_pred HHHHHHhccCccEEEeecCC
Q 030017 157 HVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 157 eV~~A~e~GAVetLLisD~l 176 (184)
.-.+|++.|-|+.++=.+++
T Consensus 162 ~a~eA~~~Glv~~v~~~~~l 181 (245)
T PF00378_consen 162 SAEEALELGLVDEVVPDEEL 181 (245)
T ss_dssp EHHHHHHTTSSSEEESGGGH
T ss_pred hhHHHHhhcceeEEcCchhh
Confidence 35789999999998777663
No 144
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=20.44 E-value=1e+02 Score=25.90 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=25.3
Q ss_pred cEEeCHHH------HHHHHhccCccEEEeecCCcccCC
Q 030017 150 RACYGPKH------VEVAHERMAVQTLLITDDLFRLVC 181 (184)
Q Consensus 150 ~v~YG~~e------V~~A~e~GAVetLLisD~l~r~~d 181 (184)
-+++|+.. .++|+.|||=+-++|+|+-|-..|
T Consensus 59 vvs~Gp~~a~~~~~lr~aLAmGaD~avli~d~~~~g~D 96 (256)
T PRK03359 59 ALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQAL 96 (256)
T ss_pred EEEECCcchhhHHHHHHHHHcCCCEEEEEecCcccCcC
Confidence 46788733 688999999999999998775544
No 145
>PTZ00288 glucokinase 1; Provisional
Probab=20.37 E-value=2.7e+02 Score=25.02 Aligned_cols=35 Identities=6% Similarity=0.061 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhccccCCcceEEEeCCcccH
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTK 73 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k 73 (184)
+.++.|.+-++..+.......++.+|+|+|++-.+
T Consensus 302 ~al~~f~~~LG~~~~nlal~l~P~~VvIgGGi~~~ 336 (405)
T PTZ00288 302 KAMKRHYKYLMRLAAEISMQFLPLTVVLMGDNIVY 336 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECccHHh
Confidence 46778888888877777666688889999977554
No 146
>KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification]
Probab=20.12 E-value=6.7e+02 Score=26.04 Aligned_cols=77 Identities=8% Similarity=0.056 Sum_probs=45.1
Q ss_pred cCeeEEEEEeCCeEEEEEEEEe-eCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHHH
Q 030017 3 EGLAHILLVGRSMTITRSRIET-SIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLL 81 (184)
Q Consensus 3 ~g~A~i~~l~~~~~~~~~~i~~-~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~ 81 (184)
..+|.+|++....-.+...+.. ++++.....+ .+...+-|.++...+.+. .++.+|.|+||--.+..++.-+.
T Consensus 614 ~~~a~f~v~vn~~Gd~vD~lrl~~~~kr~~~~n---~~~r~~k~~d~f~kFI~~---~kP~vi~v~g~~r~~q~~~~~I~ 687 (1299)
T KOG1856|consen 614 RSDAIFCVLVNFEGDLVDYLRLVDITKRKTLVN---DEERKKKFQDLFKKFIEK---KKPHVIGVSGENRLKQKIYEAIR 687 (1299)
T ss_pred CCceEEEEEEcCCCceeeeeeccchhhhhhccc---hhhhhhhHHHHHHHHHHh---cCCCEEEeeCCCchhHHHHHHHH
Confidence 4568888887755555555544 4544332222 222333333333334443 47889999999888888887665
Q ss_pred HHHH
Q 030017 82 LEAE 85 (184)
Q Consensus 82 ~~~~ 85 (184)
+...
T Consensus 688 ~~v~ 691 (1299)
T KOG1856|consen 688 QLVH 691 (1299)
T ss_pred HHHH
Confidence 5543
No 147
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=20.04 E-value=2.7e+02 Score=19.08 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=24.4
Q ss_pred CCcceEEEeCCcccHHHHHHHHHHHHHhccchhhhhccCcEEEEecCCC----cchhHHHHhc
Q 030017 59 NVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSG----YKHSLREVLD 117 (184)
Q Consensus 59 ~~v~~ivIaGPGf~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~----~~~gl~E~l~ 117 (184)
+++..|+|. +++++.+.+.+.+..... ...-++.+.+..+ +...+++.++
T Consensus 41 ~~~gIIii~------e~~~~~~~~~l~~~~~~~---~~P~iv~IP~~~~~~~~~~~~i~~~v~ 94 (95)
T PF01990_consen 41 EDVGIIIIT------EDLAEKIRDELDEYREES---SLPLIVEIPSKEGSMGREKDSIRELVK 94 (95)
T ss_dssp TTEEEEEEE------HHHHTTHHHHHHHHHHTS---SSSEEEEESTTCCCTSSCCHHHHHHHH
T ss_pred CCccEEEee------HHHHHHHHHHHHHHHhcc---CCceEEEcCCCCCCCCcchHHHHHHhc
Confidence 466444443 566666666654431110 0112455555544 2356777665
Done!