Query 030017
Match_columns 184
No_of_seqs 104 out of 566
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 11:23:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mca_B Protein DOM34, elongati 100.0 1.1E-47 3.8E-52 335.7 18.8 182 1-182 142-323 (390)
2 2vgn_A DOM34; translation term 100.0 6.6E-45 2.3E-49 317.9 20.0 182 1-182 147-329 (386)
3 3j15_A Protein pelota; ribosom 100.0 1.1E-43 3.9E-48 307.3 12.8 168 1-178 141-308 (357)
4 3obw_A Protein pelota homolog; 100.0 3.9E-43 1.3E-47 304.5 14.2 164 1-181 153-316 (364)
5 3oby_A Protein pelota homolog; 100.0 3.3E-42 1.1E-46 297.4 14.0 160 1-180 136-295 (352)
6 3agj_B Protein pelota homolog; 100.0 3.6E-40 1.2E-44 285.5 16.7 168 1-181 136-303 (358)
7 2qi2_A Pelota, cell division p 100.0 3.1E-38 1.1E-42 272.3 13.0 156 1-178 138-293 (347)
8 3e20_C Eukaryotic peptide chai 100.0 2.7E-37 9.2E-42 273.6 6.0 165 1-177 156-332 (441)
9 3agk_A Peptide chain release f 100.0 2.7E-34 9.1E-39 249.7 13.7 162 1-175 148-324 (373)
10 1dt9_A ERF1, protein (eukaryot 100.0 4.6E-35 1.6E-39 259.2 6.7 165 1-177 151-327 (437)
11 3ir9_A Peptide chain release f 99.8 5.2E-21 1.8E-25 149.3 7.9 74 104-179 2-75 (166)
12 1x52_A Pelota homolog, CGI-17; 99.8 2.2E-19 7.5E-24 133.9 3.2 68 115-182 3-70 (124)
13 1xbi_A 50S ribosomal protein L 83.6 2.5 8.5E-05 30.2 5.7 40 136-176 16-55 (120)
14 3j21_Z 50S ribosomal protein L 81.5 2.8 9.6E-05 28.7 5.2 29 147-175 12-40 (99)
15 3gdz_A Arginyl-tRNA synthetase 79.7 1.4 4.8E-05 30.9 3.1 28 46-73 59-87 (109)
16 2lbw_A H/ACA ribonucleoprotein 79.4 4 0.00014 29.1 5.5 31 146-176 16-46 (121)
17 3v7q_A Probable ribosomal prot 79.3 2.2 7.7E-05 29.4 4.0 32 145-176 14-45 (101)
18 4a18_G RPL30; ribosome, eukary 77.4 3 0.0001 28.8 4.3 29 148-176 20-48 (104)
19 3on1_A BH2414 protein; structu 77.3 4.8 0.00017 27.5 5.3 32 145-176 13-44 (101)
20 1w41_A 50S ribosomal protein L 77.1 3.3 0.00011 28.3 4.4 28 148-175 14-41 (101)
21 3v7e_A Ribosome-associated pro 76.4 3.5 0.00012 27.3 4.2 29 148-176 9-37 (82)
22 1vq8_F 50S ribosomal protein L 75.3 6.5 0.00022 27.8 5.7 29 148-176 27-55 (120)
23 3u5e_c L32, RP73, YL38, 60S ri 74.6 6.1 0.00021 27.3 5.3 32 145-176 17-48 (105)
24 3cpq_A 50S ribosomal protein L 72.5 4.9 0.00017 28.0 4.4 29 148-176 19-47 (110)
25 3iz5_f 60S ribosomal protein L 72.5 7.5 0.00026 27.4 5.3 32 145-176 21-52 (112)
26 2aif_A Ribosomal protein L7A; 71.3 8.8 0.0003 27.8 5.6 37 139-176 31-67 (135)
27 2fc3_A 50S ribosomal protein L 71.2 7.1 0.00024 27.8 5.0 28 149-176 27-54 (124)
28 1rlg_A 50S ribosomal protein L 70.4 7.2 0.00025 27.5 4.9 28 149-176 26-53 (119)
29 2ale_A SNU13, NHP2/L7AE family 69.3 9.9 0.00034 27.6 5.5 30 147-176 29-58 (134)
30 3o85_A Ribosomal protein L7AE; 69.1 12 0.0004 26.7 5.8 30 147-176 28-57 (122)
31 3vi6_A 60S ribosomal protein L 67.4 5.3 0.00018 28.7 3.7 29 148-176 25-53 (125)
32 3r8e_A Hypothetical sugar kina 63.6 20 0.00067 29.1 6.9 72 39-113 239-311 (321)
33 2xzm_U Ribosomal protein L7AE 63.3 11 0.00038 27.0 4.7 30 147-176 21-50 (126)
34 4htl_A Beta-glucoside kinase; 58.3 16 0.00056 29.3 5.5 68 39-113 216-283 (297)
35 3vgl_A Glucokinase; ROK family 56.6 40 0.0014 27.2 7.6 72 39-113 231-304 (321)
36 2jnb_A NHP2-like protein 1; sp 55.7 16 0.00055 26.9 4.5 31 146-176 46-76 (144)
37 3mcp_A Glucokinase; structural 53.1 26 0.0009 29.4 6.1 51 39-90 238-289 (366)
38 4db3_A Glcnac kinase, N-acetyl 51.9 29 0.001 28.2 6.1 70 40-113 249-318 (327)
39 4dey_A Voltage-dependent L-typ 51.5 35 0.0012 28.7 6.5 78 59-147 140-229 (337)
40 2gup_A ROK family protein; sug 47.0 26 0.00089 27.7 4.9 48 40-87 207-254 (292)
41 2qm1_A Glucokinase; alpha-beta 46.3 53 0.0018 26.1 6.8 50 39-88 241-291 (326)
42 3htv_A D-allose kinase, alloki 44.0 39 0.0013 27.3 5.6 69 39-113 218-291 (310)
43 3u5c_M 40S ribosomal protein S 43.4 34 0.0012 25.1 4.6 39 137-176 28-66 (143)
44 2yhw_A Bifunctional UDP-N-acet 42.1 48 0.0017 26.8 5.9 48 39-88 263-310 (343)
45 1z05_A Transcriptional regulat 39.9 71 0.0024 26.9 6.8 48 40-87 337-385 (429)
46 1z6r_A MLC protein; transcript 38.5 75 0.0026 26.4 6.7 48 40-87 314-362 (406)
47 3epq_A Putative fructokinase; 38.4 41 0.0014 27.1 4.8 49 39-87 203-251 (302)
48 1x7o_A Avirb, rRNA methyltrans 37.9 29 0.00099 28.2 3.8 29 149-177 40-69 (287)
49 1ipa_A RRMH, RNA 2'-O-ribose m 37.4 30 0.001 27.9 3.8 29 149-177 28-57 (274)
50 4fzw_C 1,2-epoxyphenylacetyl-C 37.3 58 0.002 26.0 5.6 45 19-70 25-69 (274)
51 3vov_A Glucokinase, hexokinase 36.4 60 0.0021 25.9 5.6 49 40-88 217-267 (302)
52 2e2o_A Hexokinase; acetate and 36.1 50 0.0017 26.1 5.0 46 40-85 219-264 (299)
53 2pk8_A Uncharacterized protein 36.0 66 0.0023 22.1 4.7 45 33-84 8-53 (103)
54 3nk6_A 23S rRNA methyltransfer 35.9 35 0.0012 27.6 4.0 29 149-177 34-63 (277)
55 2hoe_A N-acetylglucosamine kin 35.5 97 0.0033 25.5 6.9 49 39-87 293-342 (380)
56 2zkr_f 60S ribosomal protein L 35.4 29 0.001 28.2 3.4 31 146-176 131-161 (266)
57 4fzw_A 2,3-dehydroadipyl-COA h 34.4 78 0.0027 24.9 5.8 45 19-70 15-59 (258)
58 3i47_A Enoyl COA hydratase/iso 33.4 76 0.0026 25.1 5.6 45 19-70 14-58 (268)
59 3u61_B DNA polymerase accessor 32.6 1E+02 0.0035 24.3 6.4 43 61-114 48-91 (324)
60 1saz_A Probable butyrate kinas 32.1 58 0.002 27.2 4.9 66 39-113 272-340 (381)
61 3hrx_A Probable enoyl-COA hydr 32.0 67 0.0023 25.1 5.0 45 19-70 10-54 (254)
62 3jyw_G 60S ribosomal protein L 30.7 38 0.0013 23.8 3.0 32 145-176 20-51 (113)
63 3sll_A Probable enoyl-COA hydr 30.4 80 0.0027 25.3 5.3 45 19-70 34-78 (290)
64 3gow_A PAAG, probable enoyl-CO 29.6 77 0.0026 24.8 5.0 45 19-70 10-54 (254)
65 4f47_A Enoyl-COA hydratase ECH 29.4 77 0.0026 25.2 5.0 45 19-70 30-74 (278)
66 3qre_A Enoyl-COA hydratase, EC 29.1 77 0.0026 25.6 5.0 45 19-70 40-84 (298)
67 3kqf_A Enoyl-COA hydratase/iso 28.7 91 0.0031 24.6 5.4 45 19-70 19-63 (265)
68 3rsi_A Putative enoyl-COA hydr 28.6 82 0.0028 24.8 5.0 45 19-70 19-63 (265)
69 2ch5_A NAGK protein; transfera 28.4 1.4E+02 0.0047 23.9 6.5 49 39-87 236-293 (347)
70 3tlf_A Enoyl-COA hydratase/iso 28.2 83 0.0028 24.9 5.0 45 19-70 21-65 (274)
71 4hdt_A 3-hydroxyisobutyryl-COA 27.7 91 0.0031 25.9 5.4 45 19-70 19-63 (353)
72 3swx_A Probable enoyl-COA hydr 27.7 86 0.003 24.7 5.0 45 19-70 19-63 (265)
73 3qxz_A Enoyl-COA hydratase/iso 27.2 93 0.0032 24.5 5.1 45 19-70 17-61 (265)
74 2aa4_A Mannac kinase, putative 27.2 28 0.00097 27.4 2.0 46 41-86 214-259 (289)
75 3l3s_A Enoyl-COA hydratase/iso 26.6 1.4E+02 0.0049 23.3 6.2 44 19-70 17-60 (263)
76 3r9q_A Enoyl-COA hydratase/iso 26.6 93 0.0032 24.5 5.0 45 19-70 21-65 (262)
77 3pe8_A Enoyl-COA hydratase; em 26.5 94 0.0032 24.4 5.0 45 19-70 19-63 (256)
78 3rrv_A Enoyl-COA hydratase/iso 25.7 97 0.0033 24.6 5.0 45 19-70 38-82 (276)
79 3fdu_A Putative enoyl-COA hydr 25.6 1E+02 0.0034 24.4 5.0 45 19-70 15-59 (266)
80 3myb_A Enoyl-COA hydratase; ss 25.5 1.1E+02 0.0039 24.4 5.4 45 19-70 36-80 (286)
81 3g64_A Putative enoyl-COA hydr 25.4 1E+02 0.0034 24.5 5.0 45 19-70 27-71 (279)
82 3oc7_A Enoyl-COA hydratase; se 25.3 1E+02 0.0035 24.2 5.1 45 19-70 21-65 (267)
83 3qmj_A Enoyl-COA hydratase, EC 25.3 1E+02 0.0035 24.0 5.0 45 19-70 16-60 (256)
84 3tvt_A Disks large 1 tumor sup 25.3 49 0.0017 26.9 3.1 22 60-83 99-120 (292)
85 3lao_A Enoyl-COA hydratase/iso 25.3 1E+02 0.0035 24.1 5.0 45 19-70 22-66 (258)
86 3r9t_A ECHA1_1; ssgcid, seattl 24.8 1E+02 0.0036 24.3 5.0 45 19-70 19-63 (267)
87 3moy_A Probable enoyl-COA hydr 24.5 1.2E+02 0.0042 23.8 5.4 45 19-70 20-64 (263)
88 3qxi_A Enoyl-COA hydratase ECH 24.3 1.1E+02 0.0037 24.1 5.0 45 19-70 25-69 (265)
89 3trr_A Probable enoyl-COA hydr 24.3 98 0.0034 24.3 4.8 45 19-70 17-61 (256)
90 3h1q_A Ethanolamine utilizatio 24.3 1E+02 0.0034 23.7 4.8 44 41-84 206-250 (272)
91 3t8b_A 1,4-dihydroxy-2-naphtho 24.2 1.1E+02 0.0036 25.3 5.1 45 19-70 67-111 (334)
92 3lke_A Enoyl-COA hydratase; ny 24.1 1E+02 0.0035 24.2 4.8 45 19-70 14-58 (263)
93 1pjh_A Enoyl-COA isomerase; EC 23.8 1.1E+02 0.0039 24.1 5.1 45 19-70 19-63 (280)
94 3t89_A 1,4-dihydroxy-2-naphtho 23.6 1.1E+02 0.0038 24.5 5.0 45 19-70 38-82 (289)
95 2vx2_A Enoyl-COA hydratase dom 23.5 1.5E+02 0.005 23.7 5.7 45 19-70 43-87 (287)
96 2a7k_A CARB; crotonase, antibi 23.5 1.5E+02 0.0052 22.9 5.7 45 19-70 10-55 (250)
97 3p5m_A Enoyl-COA hydratase/iso 23.5 96 0.0033 24.3 4.5 44 19-70 16-60 (255)
98 3h81_A Enoyl-COA hydratase ECH 23.5 1.5E+02 0.005 23.6 5.7 45 19-70 35-79 (278)
99 3njd_A Enoyl-COA hydratase; ss 23.2 92 0.0032 25.5 4.5 45 19-70 45-89 (333)
100 1kjw_A Postsynaptic density pr 23.0 57 0.002 26.4 3.1 20 62-83 106-125 (295)
101 2j5i_A P-hydroxycinnamoyl COA 22.9 1.2E+02 0.0042 23.9 5.1 45 19-70 19-63 (276)
102 3sr0_A Adenylate kinase; phosp 22.8 48 0.0016 25.2 2.5 76 63-155 3-83 (206)
103 1dci_A Dienoyl-COA isomerase; 22.8 1.4E+02 0.0046 23.6 5.3 45 19-70 14-58 (275)
104 3js6_A Uncharacterized PARM pr 22.1 1.1E+02 0.0038 25.2 4.9 34 37-70 266-300 (355)
105 1uiy_A Enoyl-COA hydratase; ly 22.0 1.3E+02 0.0045 23.3 5.1 45 19-70 9-53 (253)
106 3izc_H 60S ribosomal protein R 21.9 99 0.0034 24.9 4.2 30 147-176 128-157 (256)
107 2ap1_A Putative regulator prot 21.7 67 0.0023 25.7 3.3 32 41-72 250-281 (327)
108 3t3w_A Enoyl-COA hydratase; ss 21.7 1.3E+02 0.0045 23.8 5.1 45 19-70 30-74 (279)
109 2ej5_A Enoyl-COA hydratase sub 21.6 1.3E+02 0.0046 23.3 5.0 45 19-70 13-57 (257)
110 1nzy_A Dehalogenase, 4-chlorob 21.5 1.3E+02 0.0046 23.5 5.0 45 19-70 13-57 (269)
111 3lyu_A Putative hydrogenase; t 21.3 1E+02 0.0034 21.7 3.9 20 60-79 107-126 (142)
112 1mj3_A Enoyl-COA hydratase, mi 21.3 1.6E+02 0.0053 23.0 5.4 45 19-70 17-61 (260)
113 2j5g_A ALR4455 protein; enzyme 21.0 1.4E+02 0.0048 23.5 5.1 45 19-70 34-78 (263)
114 2q2r_A Glucokinase 1, putative 21.0 98 0.0034 25.4 4.3 48 39-86 283-333 (373)
115 2uzf_A Naphthoate synthase; ly 20.8 1.4E+02 0.0048 23.6 5.0 45 19-70 23-67 (273)
116 3he2_A Enoyl-COA hydratase ECH 20.8 1.5E+02 0.0052 23.4 5.2 44 19-70 31-74 (264)
117 2q35_A CURF; crotonase, lyase; 20.4 1.4E+02 0.0047 23.2 4.8 45 19-70 13-57 (243)
No 1
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-47 Score=335.72 Aligned_cols=182 Identities=37% Similarity=0.640 Sum_probs=174.6
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHH
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHL 80 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl 80 (184)
||+|+|+||+|+++++++++++++++||||++|.++|++++++||++|++++.+++++.++++||||||||+|++|++||
T Consensus 142 ~deg~A~i~ll~~~~~~~~~~i~~~iPkK~~~gg~~~~~~~~~F~~~V~e~l~~~~d~~~v~~iIlaGPgf~K~~f~~~L 221 (390)
T 3mca_B 142 LDEGLANICLITDYMTILRQRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYI 221 (390)
T ss_dssp EETTEEEEEEECSSCEEEEEEEECCCCCCBTTBCHHHHHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESSSHHHHHHHHH
T ss_pred EECCcEEEEEEcCCEEEEEEEEEEeCCCcCCCCchhHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECChHHHHHHHHHH
Confidence 58899999999999999999999999999987655899999999999999999999999999999999999999999999
Q ss_pred HHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCCCcEEeCHHHHHH
Q 030017 81 LLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEV 160 (184)
Q Consensus 81 ~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~~~v~YG~~eV~~ 160 (184)
.+++++..++.|++++++|+++++|+||++|++|+|++|+++++|+++++++|.++|++|+++|++|++++|||+++|.+
T Consensus 222 ~~~~~~~~~k~l~~~~~k~~vv~~s~gg~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~ 301 (390)
T 3mca_B 222 FSMAVKLDLKQIVKSKNKFVILHSSTGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLK 301 (390)
T ss_dssp HHHHHHTTCHHHHHHGGGEEEEECSCSSGGGGGTSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHH
T ss_pred HHHHhhccchhhhhhcCeEEEEEcCCCcchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHH
Confidence 99999888888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCccEEEeecCCcccCCC
Q 030017 161 AHERMAVQTLLITDDLFRLVCS 182 (184)
Q Consensus 161 A~e~GAVetLLisD~l~r~~d~ 182 (184)
|+++|||+||||+|++||+.|+
T Consensus 302 Ale~GAVetLLI~d~l~r~~d~ 323 (390)
T 3mca_B 302 AFELGAIGELLISDSLFRSSDI 323 (390)
T ss_dssp HHHTTCBSSCEEEETTCCCSCH
T ss_pred HHHcCCCeEEEEecccccCCCh
Confidence 9999999999999999998764
No 2
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=100.00 E-value=6.6e-45 Score=317.90 Aligned_cols=182 Identities=31% Similarity=0.525 Sum_probs=166.3
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCCCc-chhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHH
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAI-AGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRH 79 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~~~-s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~y 79 (184)
||+|+|+||++++++++++++++.++||||+++| |+|++++++||++|++++.+++++.++++||||||||+|++|++|
T Consensus 147 ~d~~~A~i~~l~~~~~~~~~~i~~~iP~K~~~g~~s~~~~~~~~F~~~V~~~l~~~~~~~~v~~lIlaGPg~~k~~f~~~ 226 (386)
T 2vgn_A 147 LQEGIAHVCLVTSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDK 226 (386)
T ss_dssp EETTEEEEEEECSSCEEEEEEEEC---------CCSSCCHHHHHHHHHHHHHHHHHCCTTTCSEEEEEESTTHHHHHHHH
T ss_pred EECCcEEEEEEECCEEEEEEEEEecCCCCccCCCcchHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHH
Confidence 5899999999999999999999999999997775 449999999999999999999998999999999999999999999
Q ss_pred HHHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCCCcEEeCHHHHH
Q 030017 80 LLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVE 159 (184)
Q Consensus 80 l~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~~~v~YG~~eV~ 159 (184)
+.+++++..++.|..++++|+++++|+++.+|++|+|++|+++++|+++++++|.++|++|+++|+++++++|||+++|.
T Consensus 227 l~~~~~~~~~~~~~~~~~ki~vv~~s~~~~~gl~Evl~~~~v~~~L~d~k~~~E~~~l~~f~~~l~~d~~~a~yG~~eV~ 306 (386)
T 2vgn_A 227 IFQYAEEEHNKKILDNKGMFFIAHCSTGYLQGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVV 306 (386)
T ss_dssp HHHHHHHTTCHHHHTTGGGEEEEECSCSSTHHHHHHHHCGGGHHHHHHHHTHHHHHHHHHHHHHHTTTCSSEEESHHHHH
T ss_pred HHHHhhhhccchhhhccCcEEEEECCCCccccHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHH
Confidence 99999998889998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCccEEEeecCCcccCCC
Q 030017 160 VAHERMAVQTLLITDDLFRLVCS 182 (184)
Q Consensus 160 ~A~e~GAVetLLisD~l~r~~d~ 182 (184)
+|+++|||+||||+|+++|+.|+
T Consensus 307 ~Ale~GAVetLLV~d~l~r~~d~ 329 (386)
T 2vgn_A 307 KAAEYGAISYLLLTDKVLHSDNI 329 (386)
T ss_dssp HHHHTTCEEEEEEETTGGGSSCH
T ss_pred HHHHcCCcEEEEEechhhcCCCc
Confidence 99999999999999999997764
No 3
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-43 Score=307.34 Aligned_cols=168 Identities=26% Similarity=0.344 Sum_probs=158.7
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHH
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHL 80 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl 80 (184)
||+|+|+||+|++++++++++++.++||||. |+.+++++++||++|++++.+++++.++++||||||||+|++|++||
T Consensus 141 ~d~g~A~i~~l~~~~~~~~~~i~~~ipkK~~--~~~~e~~~~~f~~~Vae~~~~~~~~~~v~~iilaGPg~~k~~f~~~l 218 (357)
T 3j15_A 141 IDDGEADMALVREYGVEILNSIRHNLGGKRY--NTDRESEEMKFFHDVAKTMEEVMKRENVEKAIVAGPGFVKEDFYKFL 218 (357)
T ss_dssp ECSSCEEEEEEETTEEEEEECCCCCSCSSSS--SCCCCHHHHHHHHHHHHHHHHHHHHHTCCCCEECCSTTHHHHHHHHH
T ss_pred EECCcEEEEEEeCCEEEEEEEEEecCCCCcc--cchHHHHHHHHHHHHHHHHHHHhcccCCCEEEEECChHHHHHHHHHH
Confidence 6899999999999999999999999999974 67889999999999999999999999999999999999999999999
Q ss_pred HHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCCCcEEeCHHHHHH
Q 030017 81 LLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEV 160 (184)
Q Consensus 81 ~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~~~v~YG~~eV~~ 160 (184)
.+++ +. .+++++++|+|++|.+||+|+|++++++++|+++++++|.++|++|++++++|++++|||+++|.+
T Consensus 219 ~~~~-----~~---l~~kvv~v~~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~ 290 (357)
T 3j15_A 219 KEKY-----PE---LAKKVVIEDTSVTGRTGIYEVIKRGVVDRVYQENRVAKEVQLVEKVLENIARNNGLVAYGLKEVEE 290 (357)
T ss_dssp HHHS-----CC---SSCEECCCCCSCCHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTEEESTHHHHH
T ss_pred HHhh-----HH---hhCeEEEEeCCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHH
Confidence 9863 21 245788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCccEEEeecCCcc
Q 030017 161 AHERMAVQTLLITDDLFR 178 (184)
Q Consensus 161 A~e~GAVetLLisD~l~r 178 (184)
|+++|||+||||+|+++|
T Consensus 291 Ale~GAVetLLV~d~l~r 308 (357)
T 3j15_A 291 AVNYGAVETLLVLDELLK 308 (357)
T ss_dssp HHHHTCEEEEEEEHHHHT
T ss_pred HHHhCCCcEEEEeccccc
Confidence 999999999999999998
No 4
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.9e-43 Score=304.47 Aligned_cols=164 Identities=18% Similarity=0.195 Sum_probs=154.9
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHH
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHL 80 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl 80 (184)
||+|+|+||+|+++++++++++++++||||+ +++++||++|++++.+++++.++++||||||||+|++|++||
T Consensus 153 ~d~g~A~i~~l~~~~~~~~~~i~~~iPkK~~-------~~~~~f~~~V~e~~~~~~~~~~v~~iIlaGPg~~K~~f~~~l 225 (364)
T 3obw_A 153 VDFDEYLIAIPFEQGIKILSEKSLRPLNEEE-------GIIEQNALEIATELAEYVKQYDPDAILLAGPGFFKEEVSKKV 225 (364)
T ss_dssp EETTEEEEEEECSSCEECCCEEECGGGCSST-------THHHHHHHHHHHHHHHHHHHHCCSEEEEECSSSHHHHHHHHH
T ss_pred EECCcEEEEEEeCCEEEEEEEEEeeCccchh-------HHHHHHHHHHHHHHHHHhccccCCEEEEECChHHHHHHHHHH
Confidence 5899999999999999999999999999963 678999999999999999999999999999999999999999
Q ss_pred HHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCCCcEEeCHHHHHH
Q 030017 81 LLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEV 160 (184)
Q Consensus 81 ~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~~~v~YG~~eV~~ 160 (184)
+++++ ++++.++++|++|++||+|+|++|+++++|+++++++|.++|++|++++++|++++|||+++|.+
T Consensus 226 ~~~~~----------~~~i~~vd~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~ 295 (364)
T 3obw_A 226 NAILK----------NKKIYIDSVSSATRAGLHEVLKRDIIDKIMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKN 295 (364)
T ss_dssp HTTTC----------CSEEEEECCSCSSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSEEESHHHHHH
T ss_pred HHHhh----------cCeEEEEeCCCCchHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHH
Confidence 88642 23688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCccEEEeecCCcccCC
Q 030017 161 AHERMAVQTLLITDDLFRLVC 181 (184)
Q Consensus 161 A~e~GAVetLLisD~l~r~~d 181 (184)
|+++|||+||||+|+++|+.|
T Consensus 296 Ale~GAVetLLV~d~l~r~~d 316 (364)
T 3obw_A 296 AIEMGAVETVLVIEDLLSSDE 316 (364)
T ss_dssp HHHHTCEEEEEEEGGGGSSCH
T ss_pred HHHhCCCcEEEEeccCccccc
Confidence 999999999999999999864
No 5
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=100.00 E-value=3.3e-42 Score=297.40 Aligned_cols=160 Identities=20% Similarity=0.296 Sum_probs=141.4
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHH
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHL 80 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl 80 (184)
||+|+|+||+|+++++++++++++++||||. + .+ ++||++|++++.++ ++++||||||||+|++|++||
T Consensus 136 ~d~g~A~i~~l~~~~~~~~~~i~~~ipkK~g--~-~r----~~F~~~V~e~~~~~----~v~~iIlaGPg~~K~~f~~~l 204 (352)
T 3oby_A 136 IEEGYAVAGVLRQWGVEEIFEERMGYGKGMG--D-SR----KEFFGEVAAKLESF----DFKYLIVAGPGFAKNDFLDFL 204 (352)
T ss_dssp EETTEEEEEEEETTEEEEEEEEEC-----------CC----CCHHHHHHHHHHHH----CCSEEEEECSTTHHHHHHHHH
T ss_pred EECCcEEEEEEeCCEEEEEEEEeccCCCccc--h-hH----HHHHHHHHHHHHhc----CCCEEEEECCHHHHHHHHHHH
Confidence 5899999999999999999999999999863 2 22 89999999999998 699999999999999999999
Q ss_pred HHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCCCcEEeCHHHHHH
Q 030017 81 LLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEV 160 (184)
Q Consensus 81 ~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~~~v~YG~~eV~~ 160 (184)
.+++.+ + +++++++++|+||++|++|+|++++++++|+++++++|.++|++||++|++| +++|||+++|.+
T Consensus 205 ~~~~~~-----l---~~kvv~v~~s~gg~~gl~Evl~~~~v~~~L~~~k~~~E~~~le~f~~~l~~d-~~a~YG~~eV~~ 275 (352)
T 3oby_A 205 KERYPE-----M---AKNAVVVDVSSVGSRGFIEILKRRVVDKIVGEVRLAEEAEYIDRLLEGIAKG-ERVAYGLDEVRE 275 (352)
T ss_dssp HHHCHH-----H---HTTEEECCCCCCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSEEESHHHHHH
T ss_pred HHHHHH-----h---hCcEEEEECCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEECHHHHHH
Confidence 986322 1 3468899999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHhccCccEEEeecCCcccC
Q 030017 161 AHERMAVQTLLITDDLFRLV 180 (184)
Q Consensus 161 A~e~GAVetLLisD~l~r~~ 180 (184)
|+++|||+||||+|+++|+.
T Consensus 276 Ale~GAVetLLIsd~l~r~~ 295 (352)
T 3oby_A 276 AHNYRAIEVLLVADEFLLEE 295 (352)
T ss_dssp HHTTTCEEEEEEEHHHHHHH
T ss_pred HHHcCCceEEEEeccchhcc
Confidence 99999999999999999854
No 6
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=100.00 E-value=3.6e-40 Score=285.53 Aligned_cols=168 Identities=18% Similarity=0.246 Sum_probs=159.3
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHH
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHL 80 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl 80 (184)
||+|+|+||++++++++++.+++.++|||| | +++++++++||++|++++.+++++.++++||||||||+|++|.+||
T Consensus 136 vd~~~A~i~~l~~~~~~~~~~i~~~vpkK~--g-~q~e~~~~~f~~~Va~~l~~~~~~~~~~~lIlAGpg~~k~~f~~~L 212 (358)
T 3agj_B 136 VDYDEFALAVLAGHGMKILEDTSARLPGKD--D-PSREQEVEKYVDRAAKRIVEEAARHRSPIAVIAGPGQLKTSVAEKV 212 (358)
T ss_dssp ECSSEEEEEEEESSCEEEEEEEECCCCCTT--S-TTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEESSSHHHHHHHHH
T ss_pred EECCcEEEEEEeCCEEEEEEEEEecCCCCC--c-hHHHHHHHHHHHHHHHHHHHHhcccCCcEEEEECCHHHHHHHHHHH
Confidence 589999999999999999999999999998 3 5699999999999999999999888999999999999999999999
Q ss_pred HHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCCCcEEeCHHHHHH
Q 030017 81 LLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEV 160 (184)
Q Consensus 81 ~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~~~v~YG~~eV~~ 160 (184)
.++++.+ ++.++++|+++++|++|+|++++++++|.++++++|.++|++|+++++++++++|||+++|.+
T Consensus 213 ~~~~~~~----------~i~~v~~s~g~~~gl~E~l~~~~v~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~ 282 (358)
T 3agj_B 213 QRAMPSL----------KVATVDTSMGGVAGVREALRRESVTRILRELSIVEAEGVLEEFLRRIAKSRDTVAYTPGEVLA 282 (358)
T ss_dssp HHHSTTS----------EEEEEECSCCHHHHHHHHTTSHHHHHHTTTCHHHHHHHHHHHHHHHHHHCGGGEEESHHHHHH
T ss_pred HHHhhhc----------eEEEEEcCCCCchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHH
Confidence 9986543 477899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCccEEEeecCCcccCC
Q 030017 161 AHERMAVQTLLITDDLFRLVC 181 (184)
Q Consensus 161 A~e~GAVetLLisD~l~r~~d 181 (184)
|+++|||+||||+|+++|+.|
T Consensus 283 Al~~GAVetLLV~d~l~r~~d 303 (358)
T 3agj_B 283 VARMGAVDTVLLVDTLLHSPD 303 (358)
T ss_dssp HHHHTCEEEEEEEHHHHTCSS
T ss_pred HHHhCCceEEEEecccccCCC
Confidence 999999999999999998754
No 7
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=100.00 E-value=3.1e-38 Score=272.29 Aligned_cols=156 Identities=21% Similarity=0.352 Sum_probs=142.1
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHH
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHL 80 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl 80 (184)
||+|+|+||++++++++++.++++++|||+. ||++. .++||++|++++.++ + ++||||||||+|++|.+|+
T Consensus 138 ~d~~~A~i~~l~~~~~~~~~~i~~~~~Kk~~--~s~f~--r~~F~~~V~~~~~~~-d----~~lIlaGPg~~k~~f~~~l 208 (347)
T 2qi2_A 138 MDEDEAQIFLIHPYGIQQVGTVYSGRSGKYA--EGNYS--EASYFDQIVNALKNY-S----NSIIILGPGFARDRFARYC 208 (347)
T ss_dssp ECSSEEEEEEECSSCEEEEEEEECCHHHHC------CC--HHHHHHHHHHHHHTC-C----SCEEEEESSSHHHHHHHHH
T ss_pred EeCCcEEEEEEECCEEEEEEEEeecCCCccc--cchhh--HHHHHHHHHHHHHhc-C----CeEEEECCHHHHHHHHHHH
Confidence 5899999999999999999999999888764 44322 289999999999998 2 8999999999999999999
Q ss_pred HHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCCCcEEeCHHHHHH
Q 030017 81 LLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEV 160 (184)
Q Consensus 81 ~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~~~v~YG~~eV~~ 160 (184)
.++++ ++++++++|+++++|++|+|++++++++|+++++++|.++|++|+++++++ ++|||+++|.+
T Consensus 209 ~~~~~-----------~~i~~v~~s~~~~~gl~Evl~~~~v~~~L~~~k~~~E~~~l~~f~~~l~~d--~~~YG~~eV~~ 275 (347)
T 2qi2_A 209 AQRGV-----------NVIGSFPANRTDSGAVYEFITSADGAKLLSNERIARDKEIVDEFLVAVKKD--MGVYGRDQTES 275 (347)
T ss_dssp HHTSC-----------CCSCCEECSSSSHHHHHHHHHSHHHHHHHTTSHHHHHHHHHHHHHHHHHTT--CEEESHHHHHH
T ss_pred HHhhc-----------ceEEEEecCCCccccHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CEEEcHHHHHH
Confidence 99853 246688999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhccCccEEEeecCCcc
Q 030017 161 AHERMAVQTLLITDDLFR 178 (184)
Q Consensus 161 A~e~GAVetLLisD~l~r 178 (184)
|+++|||+||||+|+++|
T Consensus 276 Ale~GAVetLlV~d~l~r 293 (347)
T 2qi2_A 276 ALQMGALSDLIITDEMFR 293 (347)
T ss_dssp HHHTTCEEEEEEEHHHHT
T ss_pred HHHcCCCeEEEEeccccc
Confidence 999999999999999986
No 8
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-37 Score=273.62 Aligned_cols=165 Identities=21% Similarity=0.268 Sum_probs=50.4
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCC-Ccch------hHHHHHHHHHHHHHHHHhccc---cCCcceEEEeCCc
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGP-AIAG------YESALNKFFENVLQAFLKHVD---FNVVRCAVIASPG 70 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~-~~s~------~~~~~~~ff~~i~~~l~~~~~---~~~v~~ivIaGPG 70 (184)
||+++|.++++.+++++++.+++.++||||++ |||+ |++++++||++|++++.+++. +.++++|||||||
T Consensus 156 vD~~ga~i~~l~g~~~evl~~i~~~vPkK~~~GG~S~~RF~R~ree~~~~f~~~Vae~l~~~~~~~~~~~v~~lVlaGPg 235 (441)
T 3e20_C 156 MDGHQTLYGVVSGSAREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFITDDKPNVAGIVLAGSA 235 (441)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EecCCeEEEEEecCeEEEEEEEEecCCCcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcCEEEEECCH
Confidence 57889999999999999999999999999766 5776 788899999999999999985 5689999999999
Q ss_pred ccHHHHHH--HHHHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCC
Q 030017 71 FTKDQFHR--HLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDP 148 (184)
Q Consensus 71 f~k~~f~~--yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~ 148 (184)
|+|++|.+ |+..+++.+ .+.++++|+||++|++|+|++ ++++|+++++++|.++|++|++++++|+
T Consensus 236 ~~k~~f~~~~~l~~~L~~k----------vv~~vdvs~gg~~Gl~EvL~~--~~~~L~d~k~~~E~~lle~f~~~l~~d~ 303 (441)
T 3e20_C 236 DFKTELGQSDLFDQRLQSR----------IIKTVDVSYGGDAGFNQAIEL--AADTLSNVKYVQEKKLIQRFFDEISLDS 303 (441)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcccCHHHHhh----------eEEEEECCCCCccCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999998 776554332 235789999999999999999 4899999999999999999999999999
Q ss_pred CcEEeCHHHHHHHHhccCccEEEeecCCc
Q 030017 149 TRACYGPKHVEVAHERMAVQTLLITDDLF 177 (184)
Q Consensus 149 ~~v~YG~~eV~~A~e~GAVetLLisD~l~ 177 (184)
+++|||+++|.+|+++|||+||||+|++.
T Consensus 304 g~a~YG~~eV~~Ale~GAVetLLIsD~l~ 332 (441)
T 3e20_C 304 GKYCFGVVDTMNALQEGAVETLLCFADLD 332 (441)
T ss_dssp SCCCCSHHHHHHHHHSSCCSEEEEETTCC
T ss_pred CcEEECHHHHHHHHHhCCccEEEEecccc
Confidence 99999999999999999999999999996
No 9
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=100.00 E-value=2.7e-34 Score=249.72 Aligned_cols=162 Identities=24% Similarity=0.317 Sum_probs=143.0
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCC-Ccch------hHHHHHHHHHHHHHHHHhcc---c-cCCcceEEEeCC
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGP-AIAG------YESALNKFFENVLQAFLKHV---D-FNVVRCAVIASP 69 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~-~~s~------~~~~~~~ff~~i~~~l~~~~---~-~~~v~~ivIaGP 69 (184)
||+|+|+||++++++++++.+++.++|+||.. |||+ +++.+++||++|++++.+++ + +.++++||||||
T Consensus 148 vd~~~A~i~~~~~~~~~~~~~i~~~vp~K~~~gG~s~~rf~r~~e~~~~~f~~~V~~~l~~~~~~~~~~~~~~~lilaGp 227 (373)
T 3agk_A 148 VERDQATIGLLKGARLEVLKELEGFVPGKHKMGGQSQRRYERIIEQMVDEFFKKVGEEASNLLVPLAEKGVLKGVIVAGP 227 (373)
T ss_dssp EETTEEEEEEEETTEEEEEEEEECCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred EeCCcEEEEEEeCcEEEEEEEEEecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcceEEEECC
Confidence 58899999999999999999999999999877 4776 78999999999999999987 3 468999999999
Q ss_pred cccHHHHH--HHHHHHHHhccchhhhhccCcEE--EEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhh
Q 030017 70 GFTKDQFH--RHLLLEAERRQLRPIIENKSRII--LVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLT 145 (184)
Q Consensus 70 Gf~k~~f~--~yl~~~~~~~~~~~l~~~~~k~~--~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~ 145 (184)
||+|++|. +||..+++.+ ++ ++++|+++.+|++|++++. .++|.++++.+|.++|++|+++++
T Consensus 228 ~~~k~~f~~~~~l~~~l~~~-----------vi~~~v~~s~~~~~g~~E~l~~~--~~~l~~~~~~~e~~~l~~f~~~l~ 294 (373)
T 3agk_A 228 GLAKQEFVEGNYLDYRLKKI-----------LAPELVDVAYQGLQGLKEAVMKA--EKVVEAQMYRDAVNAMEEFKLHLA 294 (373)
T ss_dssp TTHHHHHHHSSCSCHHHHTT-----------BCSSCEECCCCHHHHHHHHHHHC--TTCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhhhhcChHhhhC-----------ceeEEEccCCCccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 8998886543 44 6899999999999999964 999999999999999999999999
Q ss_pred cCCCcEEeCHHHHHHHHhccCccEEEeecC
Q 030017 146 NDPTRACYGPKHVEVAHERMAVQTLLITDD 175 (184)
Q Consensus 146 ~~~~~v~YG~~eV~~A~e~GAVetLLisD~ 175 (184)
++++++|||+++|.+|+++|||+||||+|+
T Consensus 295 ~~~g~a~yG~~eV~~Al~~GaVetLlv~d~ 324 (373)
T 3agk_A 295 KGTGMIVYGEKDVEAALEMGAVKTLLIHES 324 (373)
T ss_dssp TTCCCEEESHHHHHHHHHTTCEEEEEEETT
T ss_pred cCCCcEeeCHHHHHHHHHhCCccEEEEeCC
Confidence 999999999999999999999999999997
No 10
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=100.00 E-value=4.6e-35 Score=259.24 Aligned_cols=165 Identities=16% Similarity=0.240 Sum_probs=147.5
Q ss_pred CCcCeeEEEEEeCCeEEEEEEEEeeCCCCCCC-Ccch------hHHHHHHHHHHHHHHHHhcccc---CCcceEEEeCCc
Q 030017 1 MQEGLAHILLVGRSMTITRSRIETSIPRKHGP-AIAG------YESALNKFFENVLQAFLKHVDF---NVVRCAVIASPG 70 (184)
Q Consensus 1 id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~-~~s~------~~~~~~~ff~~i~~~l~~~~~~---~~v~~ivIaGPG 70 (184)
||+|+|+||++++++++++.+++.++|+||+. |||+ +++++++||++|++++.+++.+ .++++|||||||
T Consensus 151 vd~~~A~i~~~~~~~~~~~~~i~~~~P~K~~~Gg~s~~Rf~R~ree~~~~f~~~Vae~l~~~~~~~~~~~~~~lIlaGpg 230 (437)
T 1dt9_A 151 IDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSA 230 (437)
T ss_dssp CCSSCCCEEEEETTEEEEEECCCCCCSCCCCSSCSCSHHHHHHHHHHTTTTTTHHHHHTTTTTSCSSSCSSSCCEEEEST
T ss_pred EeCCceEEEEEcCcEEEEEEEEEecCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccEEEEECCH
Confidence 68999999999999999999999999999877 5775 3777889999999999998854 379999999999
Q ss_pred ccHHHHHH--HHHHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCC
Q 030017 71 FTKDQFHR--HLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDP 148 (184)
Q Consensus 71 f~k~~f~~--yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~ 148 (184)
|+|++|.+ ++..++..+ .+.++++|+|+++|++|+|++. +++|+++++++|.++|++|++++++++
T Consensus 231 ~~k~~f~~~~~l~~~L~~~----------vv~~v~~s~g~~~gl~E~l~~~--~~~l~~~k~~~e~~ll~~f~~~l~~d~ 298 (437)
T 1dt9_A 231 DFKTELSQSDMFDQRLQSK----------VLKLVDISYGGENGFNQAIELS--TEVLSNVKFIQEKKLIGRYFDEISQDT 298 (437)
T ss_dssp TTTHHHHSCSSSCTTTTTT----------CCCEEECSSCTTHHHHHHHHHH--SSTTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHhhccChhhHhc----------EEEEEecCCCccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999976 343222111 3567899999999999999984 999999999999999999999999999
Q ss_pred CcEEeCHHHHHHHHhccCccEEEeecCCc
Q 030017 149 TRACYGPKHVEVAHERMAVQTLLITDDLF 177 (184)
Q Consensus 149 ~~v~YG~~eV~~A~e~GAVetLLisD~l~ 177 (184)
+++|||+++|.+|+++|||+||||+|+++
T Consensus 299 g~a~yG~~eV~~Al~~GaVetLLv~d~l~ 327 (437)
T 1dt9_A 299 GKYCFGVEDTLKALEMGAVEILIVYENLD 327 (437)
T ss_dssp CCEEESHHHHHHHHHSSCCSEEEEESCCC
T ss_pred CcEEecHHHHHHHHHhCCccEEEEecCcc
Confidence 99999999999999999999999999999
No 11
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=99.83 E-value=5.2e-21 Score=149.26 Aligned_cols=74 Identities=26% Similarity=0.402 Sum_probs=71.4
Q ss_pred cCCCcchhHHHHhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCCCcEEeCHHHHHHHHhccCccEEEeecCCccc
Q 030017 104 TSSGYKHSLREVLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRL 179 (184)
Q Consensus 104 ~s~~~~~gl~E~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l~r~ 179 (184)
.||||++|++|+|.+. +++|+++++++|+++|++||++|++|++++|||+++|.+|+++|||+||||+|+++|+
T Consensus 2 ~sy~ge~Gl~E~i~~~--~~~L~~~k~~~Ekkli~~f~~~i~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~ 75 (166)
T 3ir9_A 2 NAYTDESGLSELVNAA--GEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAE 75 (166)
T ss_dssp -CCSCCSSHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCE
T ss_pred CCcccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEcHHHHHHHHHhCCceEEEEecCccce
Confidence 5899999999999985 9999999999999999999999999999999999999999999999999999999987
No 12
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=99.75 E-value=2.2e-19 Score=133.86 Aligned_cols=68 Identities=50% Similarity=0.705 Sum_probs=65.3
Q ss_pred HhcCchhHHHhhhhhHHHHHHHHHHHHHHhhcCCCcEEeCHHHHHHHHhccCccEEEeecCCcccCCC
Q 030017 115 VLDAPNVMNMIKDTKAAQEVQALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDLFRLVCS 182 (184)
Q Consensus 115 ~l~~~~v~~~l~~~k~~~e~~~le~f~~~l~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l~r~~d~ 182 (184)
+|++|+|+++|+++++++|.++|++|+++++++++++|||+++|.+|+++|||+||||+|+++|+.|+
T Consensus 3 ~l~~~~v~~~l~~~k~~~E~~ll~~f~~~i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~ 70 (124)
T 1x52_A 3 SGSSGTVASRLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDV 70 (124)
T ss_dssp SCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEEechhhhcCCCh
Confidence 57899999999999999999999999999999999999999999999999999999999999998763
No 13
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=83.59 E-value=2.5 Score=30.15 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 136 ALKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 136 ~le~f~~~l~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
+-+++++.+... +++..|.++|.+|++.|-+.-++|..|.
T Consensus 16 l~~k~~~ll~~A-gkl~~G~~~v~kai~~gka~lViiA~D~ 55 (120)
T 1xbi_A 16 IQKELLDAVAKA-QKIKKGANEVTKAVERGIAKLVIIAEDV 55 (120)
T ss_dssp HHHHHHHHHHTC-SEEEESHHHHHHHHHHTCCSEEEEESCC
T ss_pred HHHHHHHHHHHc-CCccccHHHHHHHHHcCCceEEEEcCCC
Confidence 456677777766 8999999999999999999999998875
No 14
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=81.53 E-value=2.8 Score=28.67 Aligned_cols=29 Identities=3% Similarity=0.189 Sum_probs=26.7
Q ss_pred CCCcEEeCHHHHHHHHhccCccEEEeecC
Q 030017 147 DPTRACYGPKHVEVAHERMAVQTLLITDD 175 (184)
Q Consensus 147 ~~~~v~YG~~eV~~A~e~GAVetLLisD~ 175 (184)
..+++..|.++|.+|++.|-+.-+++..|
T Consensus 12 kagk~v~G~~~v~kai~~gka~lViiA~D 40 (99)
T 3j21_Z 12 ETGKVVLGSNETIRLAKTGGAKLIIVAKN 40 (99)
T ss_dssp HSSCEEESHHHHHHHHHHTCCSEEEEECC
T ss_pred HhCCEeECHHHHHHHHHcCCccEEEEeCC
Confidence 34899999999999999999999999987
No 15
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=79.74 E-value=1.4 Score=30.92 Aligned_cols=28 Identities=32% Similarity=0.629 Sum_probs=20.4
Q ss_pred HHHHHHHHhccccC-CcceEEEeCCcccH
Q 030017 46 ENVLQAFLKHVDFN-VVRCAVIASPGFTK 73 (184)
Q Consensus 46 ~~i~~~l~~~~~~~-~v~~ivIaGPGf~k 73 (184)
++|++.+...+... -+..+-++||||+.
T Consensus 59 ~~iA~~i~~~l~~~~~i~~vevagpGFIN 87 (109)
T 3gdz_A 59 RQLAEQVLSHLDLNGIANKVEIAGPGFIN 87 (109)
T ss_dssp HHHHHHHHHHCCCTTTEEEEEEETTTEEE
T ss_pred HHHHHHHHHhcCcCCcEeEEEEeCCCeEE
Confidence 47777777766433 37889999999864
No 16
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=79.38 E-value=4 Score=29.08 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=27.8
Q ss_pred cCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 146 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 146 ~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
...+.+..|.++|.+|++.|-+.-++|..+.
T Consensus 16 ~k~gkl~~G~~~v~kai~~gkakLViiA~D~ 46 (121)
T 2lbw_A 16 SKAKNVKRGVKEVVKALRKGEKGLVVIAGDI 46 (121)
T ss_dssp HTTTCEEESHHHHHHHHHHSCCCEEEECTTC
T ss_pred HHcCCccccHHHHHHHHHcCCceEEEEeCCC
Confidence 3558999999999999999999999998775
No 17
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=79.27 E-value=2.2 Score=29.36 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=28.2
Q ss_pred hcCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 145 TNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 145 ~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
+...+++..|.++|.+|++.|-+.-+++..|.
T Consensus 14 a~kagk~v~G~~~v~kai~~gka~lViiA~D~ 45 (101)
T 3v7q_A 14 ANRARKVVSGEDLVIKEIRNARAKLVLLTEDA 45 (101)
T ss_dssp HHHTTCEEESHHHHHHHHHTTCCSEEEEETTS
T ss_pred hhhhhhcccchhhhHHHHhcCceeEEEEeccc
Confidence 34458999999999999999999999998874
No 18
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=77.40 E-value=3 Score=28.85 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=26.7
Q ss_pred CCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 148 PTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 148 ~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
.++++.|.++|.+|++.|-+.-+++..|.
T Consensus 20 agklv~G~~~v~kai~~gkaklViiA~D~ 48 (104)
T 4a18_G 20 SGKATLGYKSTIKAIRNGTAKLVFISNNC 48 (104)
T ss_dssp HSEEEESHHHHHHHHHHTCCCEEEECTTS
T ss_pred hCCEeECHHHHHHHHHcCCceEEEEeCCC
Confidence 48999999999999999999999998864
No 19
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=77.34 E-value=4.8 Score=27.54 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=28.0
Q ss_pred hcCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 145 TNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 145 ~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
+...++++.|.++|.+|++.|-+.-+++..|.
T Consensus 13 a~kagk~v~G~~~v~kai~~gka~lViiA~D~ 44 (101)
T 3on1_A 13 AARARQLLTGEEQVVKAVQNGQVTLVILSSDA 44 (101)
T ss_dssp HHHTTCEEESHHHHHHHHHTTCCSEEEEETTS
T ss_pred HHHHCCEeECHHHHHHHHHcCCCcEEEEeCCC
Confidence 33458999999999999999999999998874
No 20
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=77.13 E-value=3.3 Score=28.34 Aligned_cols=28 Identities=4% Similarity=0.130 Sum_probs=26.1
Q ss_pred CCcEEeCHHHHHHHHhccCccEEEeecC
Q 030017 148 PTRACYGPKHVEVAHERMAVQTLLITDD 175 (184)
Q Consensus 148 ~~~v~YG~~eV~~A~e~GAVetLLisD~ 175 (184)
.+++..|.++|.+|++.|-+.-+++..|
T Consensus 14 agkl~~G~~~v~kai~~gka~lViiA~D 41 (101)
T 1w41_A 14 TGKIVMGARKSIQYAKMGGAKLIIVARN 41 (101)
T ss_dssp HSEEEESHHHHHHHHHHTCCSEEEEETT
T ss_pred cCCEeECHHHHHHHHHcCCCcEEEEeCC
Confidence 3899999999999999999999999887
No 21
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=76.37 E-value=3.5 Score=27.25 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=26.5
Q ss_pred CCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 148 PTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 148 ~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
.+++..|.++|.+|++.|-+.-++|..|.
T Consensus 9 agk~~~G~~~v~kai~~gkaklViiA~D~ 37 (82)
T 3v7e_A 9 AKSIIIGTKQTVKALKRGSVKEVVVAKDA 37 (82)
T ss_dssp CSEEEESHHHHHHHHTTTCEEEEEEETTS
T ss_pred cCCeeEcHHHHHHHHHcCCeeEEEEeCCC
Confidence 37999999999999999999999998875
No 22
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=75.30 E-value=6.5 Score=27.78 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=26.7
Q ss_pred CCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 148 PTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 148 ~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
.+++..|.++|.+|++.|-+.-++|..|.
T Consensus 27 ag~l~~G~~~v~kal~~gka~lViiA~D~ 55 (120)
T 1vq8_F 27 TGAVKKGTNETTKSIERGSAELVFVAEDV 55 (120)
T ss_dssp SSCEEESHHHHHHHHHHTCCSEEEEESCC
T ss_pred cCCEeECHHHHHHHHHcCCceEEEEeCCC
Confidence 47899999999999999999999998875
No 23
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=74.61 E-value=6.1 Score=27.31 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=28.3
Q ss_pred hcCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 145 TNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 145 ~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
+...++++.|.++|.+|++.|-+.-+++..|.
T Consensus 17 a~kagk~v~G~~~v~kai~~gkaklVilA~D~ 48 (105)
T 3u5e_c 17 VIKSGKYTLGYKSTVKSLRQGKSKLIIIAANT 48 (105)
T ss_dssp HHTTSEEEESHHHHHHHHHTTCCSEEEECTTS
T ss_pred HHHhCCeeECHHHHHHHHHcCCceEEEEeCCC
Confidence 33458999999999999999999999998875
No 24
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=72.50 E-value=4.9 Score=28.02 Aligned_cols=29 Identities=7% Similarity=0.118 Sum_probs=26.7
Q ss_pred CCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 148 PTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 148 ~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
.+++..|.++|.+|++.|-+.-++|..|.
T Consensus 19 agkl~~G~~~v~kai~~gka~lViiA~D~ 47 (110)
T 3cpq_A 19 TGKVILGSKRTIKFVKHGEGKLVVLAGNI 47 (110)
T ss_dssp HSEEEESHHHHHHHHHTTCCSEEEECTTC
T ss_pred cCCeeeCHHHHHHHHHcCCceEEEEeCCC
Confidence 38999999999999999999999998876
No 25
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=72.48 E-value=7.5 Score=27.38 Aligned_cols=32 Identities=9% Similarity=0.086 Sum_probs=28.2
Q ss_pred hcCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 145 TNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 145 ~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
+...++++.|.++|.+|++.|-+.-++|..+.
T Consensus 21 a~kagk~~~G~~~t~kai~~gkakLVilA~D~ 52 (112)
T 3iz5_f 21 VMKSGKYTLGYKTVLKTLRSSLGKLIILANNC 52 (112)
T ss_dssp HHTTCEEEESHHHHHHHHHTTCCSEEEECSCC
T ss_pred HHHhCCeeECHHHHHHHHHcCCceEEEEeCCC
Confidence 33458999999999999999999999998875
No 26
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=71.30 E-value=8.8 Score=27.83 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=29.7
Q ss_pred HHHHHhhcCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 139 DFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 139 ~f~~~l~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
.++....+ .+++..|.++|.+|++.|-+.-++|..+.
T Consensus 31 ~~L~lA~k-agklv~G~~~v~kal~~gkaklViiA~D~ 67 (135)
T 2aif_A 31 NLVQQACN-YKQLRKGANEATKALNRGIAEIVLLAADA 67 (135)
T ss_dssp HHHHHHHH-TTCEEESHHHHHHHHHTTCEEEEEEETTC
T ss_pred HHHHHHHH-cCCcccCHHHHHHHHHcCCCeEEEEecCC
Confidence 34444444 48999999999999999999999998764
No 27
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=71.16 E-value=7.1 Score=27.79 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=26.3
Q ss_pred CcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 149 TRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 149 ~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
+++..|.++|.+|++.|-+.-++|..|.
T Consensus 27 gkl~~G~~~v~kal~~gka~lViiA~D~ 54 (124)
T 2fc3_A 27 GRIKKGTNETTKAVERGLAKLVVIAEDV 54 (124)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEEETTC
T ss_pred CCccCCHHHHHHHHHcCCceEEEEcCCC
Confidence 7999999999999999999999998875
No 28
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=70.39 E-value=7.2 Score=27.51 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=26.2
Q ss_pred CcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 149 TRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 149 ~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
+++..|.++|.+|++.|-+.-++|..|.
T Consensus 26 g~l~~G~~~v~kal~~gka~lViiA~D~ 53 (119)
T 1rlg_A 26 GKVKKGTNETTKAVERGLAKLVYIAEDV 53 (119)
T ss_dssp SEEEESHHHHHHHHTTTCCSEEEEESCC
T ss_pred CCeeECHHHHHHHHHcCCCcEEEEeCCC
Confidence 7999999999999999999999998875
No 29
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=69.26 E-value=9.9 Score=27.60 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=27.1
Q ss_pred CCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 147 DPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 147 ~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
..+.+..|.++|.+|++.|-+.-++|..+.
T Consensus 29 k~gkl~~G~~~v~kai~~gkakLViiA~D~ 58 (134)
T 2ale_A 29 NLRQLKKGANEATKTLNRGISEFIIMAADC 58 (134)
T ss_dssp HTTCEEESHHHHHHHHHHTCEEEEEEETTC
T ss_pred HcCCcccCchHHHHHHHhCCCeEEEEeCCC
Confidence 347899999999999999999999998875
No 30
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=69.10 E-value=12 Score=26.67 Aligned_cols=30 Identities=13% Similarity=0.094 Sum_probs=27.2
Q ss_pred CCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 147 DPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 147 ~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
..+++..|.++|.+|++.|-+.-++|..|.
T Consensus 28 kagklv~G~~~v~kai~~gka~lViiA~D~ 57 (122)
T 3o85_A 28 SLQAIKRGANEALKQVNRGKAELVIIAADA 57 (122)
T ss_dssp HTTCEEESHHHHHHHHHTTCCSEEEEETTC
T ss_pred HhCCEeEcHHHHHHHHHcCCceEEEEeCCC
Confidence 347899999999999999999999998876
No 31
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=67.39 E-value=5.3 Score=28.72 Aligned_cols=29 Identities=7% Similarity=0.111 Sum_probs=26.6
Q ss_pred CCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 148 PTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 148 ~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
.++++.|.++|.+|++.|-+.-++|..|.
T Consensus 25 aGklv~G~~~v~kaIr~gkakLVIiA~Da 53 (125)
T 3vi6_A 25 SGKYVLGYKQTLKMIRQGKAKLVILANNC 53 (125)
T ss_dssp HSEEEESHHHHHHHHHTTCCSEEEECTTS
T ss_pred hCCeeeCHHHHHHHHHcCCceEEEEeCCC
Confidence 48999999999999999999999998864
No 32
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=63.56 E-value=20 Score=29.10 Aligned_cols=72 Identities=7% Similarity=-0.048 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhccccCCcceEEEeCCcccH-HHHHHHHHHHHHhccchhhhhccCcEEEEecCCCcchhHH
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTK-DQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 113 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k-~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~ 113 (184)
..+++|...++..+....+.-++..|||+|.-... +.|.+.+.+.+.+...+... ..+.++.+..+...++.
T Consensus 239 ~~~~~~~~~La~~i~~l~~~ldP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~---~~~~i~~s~l~~~a~~~ 311 (321)
T 3r8e_A 239 AVWADIGTIIGESLVNIVRVMDLNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYT---DDMYIGKATLENDAGLL 311 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHH---TTCEEEECSSGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEeChhcccchHHHHHHHHHHHHhcccccC---CCCEEEEcCCCCcHHHH
Confidence 34667777777777666666678999999976543 55667777776655433221 12344555666555543
No 33
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=63.33 E-value=11 Score=27.04 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=26.9
Q ss_pred CCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 147 DPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 147 ~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
..++...|.++|.+|++.|-+.-++|..+.
T Consensus 21 ~~gkl~~G~~~v~Kai~~gka~LViiA~D~ 50 (126)
T 2xzm_U 21 CQDAISKGLHEVLRTIEAKQALFVCVAEDC 50 (126)
T ss_dssp SSSCEEESHHHHHHHHHHTCCSEEEEESSC
T ss_pred HcCCEeecHHHHHHHHHcCCceEEEEeCCC
Confidence 347899999999999999999999998765
No 34
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=58.32 E-value=16 Score=29.26 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHHHHHHHhccchhhhhccCcEEEEecCCCcchhHH
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 113 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~ 113 (184)
..+++|...++..+....+.-++..|||+|.=...+.|.+.+.+.+..... ....++.+..+..+++.
T Consensus 216 ~~~~~~~~~La~~i~~l~~~~~p~~IvlgGgi~~~~~~~~~l~~~l~~~~~-------~~~~i~~s~lg~~a~~~ 283 (297)
T 4htl_A 216 RLITEFYTGICTGLYNLIYLFDPTHIFIGGGITSRPTFIAELKHHMESFGL-------RDTIIETATHKNQAGLL 283 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGSTTHHHHHHHHHTTTCC-------TTCEEEECSCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccccHHHHHHHHHHHHHhcc-------CCCeEEECCcCChHHHH
Confidence 445666666777666666666789999999654445566666665543221 12345566666666654
No 35
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=56.58 E-value=40 Score=27.21 Aligned_cols=72 Identities=6% Similarity=-0.016 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHhccccCCcceEEEeCCcccH-HHHHHHHHHHHHhccc-hhhhhccCcEEEEecCCCcchhHH
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTK-DQFHRHLLLEAERRQL-RPIIENKSRIILVHTSSGYKHSLR 113 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k-~~f~~yl~~~~~~~~~-~~l~~~~~k~~~v~~s~~~~~gl~ 113 (184)
..+++|...++..+....+.-++..|||+|.-... +.|.+.+.+.+.+... +.. ...+.++.+..+..+|+.
T Consensus 231 ~~~~~~~~~La~~i~~l~~~l~p~~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~---~~~~~i~~s~l~~~a~l~ 304 (321)
T 3vgl_A 231 DSFRELARWAGAGLADLASLFDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEW---RPHAQVLAAQLGGKAGLV 304 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGGTHHHHHHHHHHHHHHCTTGGG---SCCCEEEECTTGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEeChhhcchHHHHHHHHHHHHHhcccccc---cCCCEEEECCCCCcHHHH
Confidence 44667777777777666665678899999964433 3445666666554432 211 123345556666666554
No 36
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=55.75 E-value=16 Score=26.89 Aligned_cols=31 Identities=10% Similarity=0.101 Sum_probs=27.5
Q ss_pred cCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 146 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 146 ~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
...+++..|.++|.+|++.|-+.-++|..+.
T Consensus 46 ~kagkl~~G~kev~KaI~~gkakLVIIA~D~ 76 (144)
T 2jnb_A 46 CNYKQLRKGANEATKTLNRGISEFIVMAADA 76 (144)
T ss_dssp HHTTCCCBCHHHHHHHHHHTCEEEEEEETTC
T ss_pred HHcCCccccHHHHHHHHHhCCCeEEEEeCCC
Confidence 3457899999999999999999999998875
No 37
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=53.08 E-value=26 Score=29.42 Aligned_cols=51 Identities=16% Similarity=-0.019 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhccccCCcceEEEeCCccc-HHHHHHHHHHHHHhccch
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVRCAVIASPGFT-KDQFHRHLLLEAERRQLR 90 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~-k~~f~~yl~~~~~~~~~~ 90 (184)
..++.|...++..+....+.-++ .|||+|.-.- .+.|.+.+.+.+.+...+
T Consensus 238 ~~l~~~~~~Lg~~i~nl~~~ldP-~IviGGgi~~~~~~~~~~l~~~l~~~~~~ 289 (366)
T 3mcp_A 238 AAFEELGEMAGDALASAITLIDG-LIVIGGGLSGASKYILPVLLKEMNAQTGM 289 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS-EEEEESGGGGGHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-EEEEEChhhhchHHHHHHHHHHHHHhcch
Confidence 44667777777777776666678 9999996544 356677777777665443
No 38
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=51.88 E-value=29 Score=28.18 Aligned_cols=70 Identities=10% Similarity=0.067 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHHHHHHHhccchhhhhccCcEEEEecCCCcchhHH
Q 030017 40 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 113 (184)
Q Consensus 40 ~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~ 113 (184)
.+++|.+.++..+....+.-++..|||+|.=...+.|.+.+.+.+.+...+. .....++.+..+...++.
T Consensus 249 ~~~~~~~~La~~i~~l~~~l~p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~~----~~~~~i~~s~lg~~a~~~ 318 (327)
T 4db3_A 249 HVERFMELLAICFGNIFTANDPHVVALGGGLSNFELIYEEMPKRVPKYLLSV----AKCPKIIKAKHGDSGGVR 318 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGCTHHHHHHHHHGGGGSCTT----CCCCEEEECSCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccchHHHHHHHHHHHHHHhccc----cCCCEEEECCCCCcHHHH
Confidence 3556666666666666555678899999954333455555655554432221 123445556666666554
No 39
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=51.50 E-value=35 Score=28.69 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=37.5
Q ss_pred CCcceEEEeCCcc--------cHHHHHHHHHHHHHhccchhhhhccCcEEEE----ecCCCcchhHHHHhcCchhHHHhh
Q 030017 59 NVVRCAVIASPGF--------TKDQFHRHLLLEAERRQLRPIIENKSRIILV----HTSSGYKHSLREVLDAPNVMNMIK 126 (184)
Q Consensus 59 ~~v~~ivIaGPGf--------~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v----~~s~~~~~gl~E~l~~~~v~~~l~ 126 (184)
..++.|||.||-- +++.+.+|+..+... ++.+. +.+.+.+..++-..++..+.+-+.
T Consensus 140 p~~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~-----------~i~~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~ 208 (337)
T 4dey_A 140 PSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEG-----------RISITRVTADISLAKRSVLNNPSKHAIIERSNT 208 (337)
T ss_dssp CSSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTT-----------SEEEEEECSCGGGC-------------------
T ss_pred CCCCceEEECCccccchhHHHHHHHHHHhhHHhcCC-----------ccceEeecchhhhcchhhhhcccchhhhccccc
Confidence 3577899999986 355666666666322 33222 345666666666666666666666
Q ss_pred hhhHHHHHHHHHHHHHHhhcC
Q 030017 127 DTKAAQEVQALKDFFNMLTND 147 (184)
Q Consensus 127 ~~k~~~e~~~le~f~~~l~~~ 147 (184)
...+..-...+++.++...++
T Consensus 209 ~~~~~ev~seVe~i~~v~~~G 229 (337)
T 4dey_A 209 RSSLAEVQSEIERIFELARTL 229 (337)
T ss_dssp CCCHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHHHhHHHHHHHHHhCC
Confidence 666665556777777777654
No 40
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=46.96 E-value=26 Score=27.69 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHHHHHHHhc
Q 030017 40 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERR 87 (184)
Q Consensus 40 ~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~~~~ 87 (184)
.++++.+.++..+....+.-++..|||+|.-...+.|.+.+.+.+.+.
T Consensus 207 i~~~~~~~L~~~i~~l~~~l~p~~IvlgG~i~~~~~~~~~l~~~l~~~ 254 (292)
T 2gup_A 207 AIERMNRNLAQGLLNIQYLIDPGVISLGGSISQNPDFIQGVKKAVEDF 254 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeCccccchHHHHHHHHHHHHh
Confidence 345666666666665555557889999997654455666666655443
No 41
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=46.26 E-value=53 Score=26.12 Aligned_cols=50 Identities=6% Similarity=-0.174 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhccccCCcceEEEeCCccc-HHHHHHHHHHHHHhcc
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVRCAVIASPGFT-KDQFHRHLLLEAERRQ 88 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~-k~~f~~yl~~~~~~~~ 88 (184)
..++++...++..+....+.-++..|||+|.-+. .+.|.+.+.+.+.+..
T Consensus 241 ~i~~~~~~~L~~~i~~l~~~l~p~~IvlgGg~~~~~~~~~~~l~~~l~~~~ 291 (326)
T 2qm1_A 241 MVVDRVCFYLGLATGNLGNTLNPDSVVIGGGVSAAGEFLRSRVEKYFQEFT 291 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSEEEEEESGGGGTHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEcChhhhchHHHHHHHHHHHHHhh
Confidence 3456666667766666655557889999996553 3556666766665543
No 42
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=44.04 E-value=39 Score=27.30 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhccccCCcceEEEeCCc-----ccHHHHHHHHHHHHHhccchhhhhccCcEEEEecCCCcchhHH
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVRCAVIASPG-----FTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 113 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG-----f~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~ 113 (184)
....+++++++..+....+.-+++.|||+|.- +..+.+.+.+...+ .... ...++.++.++.+...|+.
T Consensus 218 ~~~~~~~~~~a~~la~l~~~~dP~~IvlgG~v~~~~~~~~~~l~~~l~~~~----~~~~--~~~~~~i~~s~lg~~ag~~ 291 (310)
T 3htv_A 218 PFVQSLLENAARAIATSINLFDPDAVILGGGVMDMPAFPRETLVAMTQKYL----RRPL--PHQVVRFIAASSSDFNGAQ 291 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSEEEEECTTTTSTTCCHHHHHHHHHHTS----CTTT--TTTTCEEEECCCCTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCCEEEEeCchhccchhHHHHHHHHHHHHh----hccc--ccCCcEEEEcCCCCcHHHH
Confidence 34567777777777776666689999999953 33444444444332 1111 1123445666677666654
No 43
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=43.38 E-value=34 Score=25.14 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=30.6
Q ss_pred HHHHHHHhhcCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 137 LKDFFNMLTNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 137 le~f~~~l~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
|.+.++.-.+. +...-|.+++.+|++.|-+.-++|.++.
T Consensus 28 L~~vLk~A~~~-g~l~~G~~et~Kal~kg~a~LvvLA~D~ 66 (143)
T 3u5c_M 28 LKVVLRTALVH-DGLARGLRESTKALTRGEALLVVLVSSV 66 (143)
T ss_dssp HHHHHHHHHHT-TCEEESHHHHHHHHSSTTCSCEECCSCC
T ss_pred HHHHHHHHHHc-CCEeEcHHHHHHHHhcCceeEEEEeCCC
Confidence 44444444444 6889999999999999999999998764
No 44
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=42.13 E-value=48 Score=26.83 Aligned_cols=48 Identities=4% Similarity=-0.101 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHHHHHHHhcc
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQ 88 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~~~~~ 88 (184)
..+++|.+.++..+....+.-++..|||+|.-. +.|.+.+.+.+.+..
T Consensus 263 ~il~~~~~~La~~i~~l~~~l~P~~IvlgG~i~--~~~~~~l~~~l~~~~ 310 (343)
T 2yhw_A 263 SILRTAGTALGLGVVNILHTMNPSLVILSGVLA--SHYIHIVKDVIRQQA 310 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSEEEEESTTH--HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcH--HHHHHHHHHHHHHhc
Confidence 345566666777666665556788999999753 567777777766543
No 45
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=39.91 E-value=71 Score=26.87 Aligned_cols=48 Identities=6% Similarity=-0.081 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhccccCCcceEEEeCCccc-HHHHHHHHHHHHHhc
Q 030017 40 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFT-KDQFHRHLLLEAERR 87 (184)
Q Consensus 40 ~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~-k~~f~~yl~~~~~~~ 87 (184)
.+++|...++..+....+.-++..|||+|+-.. .+.|.+.+.+.+.+.
T Consensus 337 il~~~~~~L~~~i~~l~~~ldP~~IvlgG~i~~~~~~l~~~l~~~l~~~ 385 (429)
T 1z05_A 337 VIQQLGRYLGAAIAIVINLFNPEKILIGGVINQAKSILYPSIEQCIREQ 385 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEeCccccchHHHHHHHHHHHHHh
Confidence 355666666666666655557889999997754 356667777766554
No 46
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=38.51 E-value=75 Score=26.39 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhccccCCcceEEEeCCccc-HHHHHHHHHHHHHhc
Q 030017 40 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFT-KDQFHRHLLLEAERR 87 (184)
Q Consensus 40 ~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~-k~~f~~yl~~~~~~~ 87 (184)
.+++|...++..+....+.-++..|||+|.-.. .+.|.+.+.+.+.+.
T Consensus 314 ~l~~~~~~L~~~i~~l~~~ldP~~IvlgG~i~~~~~~l~~~i~~~l~~~ 362 (406)
T 1z6r_A 314 IITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSEEEEESGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEeCccchhhHHHHHHHHHHHHHh
Confidence 355666666666666555557889999997644 355666666665554
No 47
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=38.39 E-value=41 Score=27.13 Aligned_cols=49 Identities=6% Similarity=-0.061 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHHHHHHHhc
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERR 87 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~~~~ 87 (184)
..++.|...++..+....+.-+++.|||+|.=....+|.+.+.+.+.+.
T Consensus 203 ~~~~~~~~~La~~i~nl~~~ldPe~IviGGgi~~~~~l~~~i~~~l~~~ 251 (302)
T 3epq_A 203 QVWELEGYYIAQALAQYILILAPXXIILGGGVMQQXQVFSYIYQYVPKI 251 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSCEEEESSGGGCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCchhhhcCchhhhhHHHHHHHHHHHHHH
Confidence 4567777788888877777778999999996433344666666665543
No 48
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=37.89 E-value=29 Score=28.20 Aligned_cols=29 Identities=24% Similarity=0.162 Sum_probs=25.4
Q ss_pred CcEEeCHHHHHHHHhccC-ccEEEeecCCc
Q 030017 149 TRACYGPKHVEVAHERMA-VQTLLITDDLF 177 (184)
Q Consensus 149 ~~v~YG~~eV~~A~e~GA-VetLLisD~l~ 177 (184)
--.+||.+-|.+|++.|. ++.|+++++..
T Consensus 40 ~f~veG~~~V~eal~~~~~i~~l~~~~~~~ 69 (287)
T 1x7o_A 40 EFLVMGVRPISLAVEHGWPVRTLLYDGQRE 69 (287)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEESSCC
T ss_pred cEEEEeHHHHHHHHhCCCCeEEEEEecCcc
Confidence 457899999999999987 89999998864
No 49
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=37.43 E-value=30 Score=27.95 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=25.3
Q ss_pred CcEEeCHHHHHHHHhcc-CccEEEeecCCc
Q 030017 149 TRACYGPKHVEVAHERM-AVQTLLITDDLF 177 (184)
Q Consensus 149 ~~v~YG~~eV~~A~e~G-AVetLLisD~l~ 177 (184)
--.+||..-|.+|++.| .+++|+++++..
T Consensus 28 ~f~veG~~~v~eal~~~~~i~~l~~~~~~~ 57 (274)
T 1ipa_A 28 RFLIEGAREIERALQAGIELEQALVWEGGL 57 (274)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEETTCC
T ss_pred eEEEEeHHHHHHHHhCCCCeEEEEEEcCcc
Confidence 56789999999999988 699999998754
No 50
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=37.33 E-value=58 Score=25.95 Aligned_cols=45 Identities=9% Similarity=0.259 Sum_probs=27.4
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+.+|+-+=|.|+..=. ...+.++.+++.+.-..+++++|||.|-|
T Consensus 25 Va~itlnRP~~~NAl~-------~~m~~~L~~al~~~~~d~~vr~vVltg~G 69 (274)
T 4fzw_C 25 VMTLTLNRPERLNSFN-------DEMHAQLAECLKQVERDDTIRCLLLTGAG 69 (274)
T ss_dssp EEEEEECCTTTTSCBC-------HHHHHHHHHHHHHHHHCTTCCEEEEEESS
T ss_pred EEEEEEcCcCccCCCC-------HHHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 4567778888754411 23444455555544333579999998876
No 51
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=36.38 E-value=60 Score=25.92 Aligned_cols=49 Identities=12% Similarity=-0.044 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhccccCCcceEEEeCCcc-c-HHHHHHHHHHHHHhcc
Q 030017 40 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGF-T-KDQFHRHLLLEAERRQ 88 (184)
Q Consensus 40 ~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf-~-k~~f~~yl~~~~~~~~ 88 (184)
.+++|...++..+....+.-++..|||+|.-. . .+.|.+.+.+.+.+..
T Consensus 217 ~~~~~~~~l~~~i~~l~~~~~p~~ivlgG~i~~~~~~~l~~~l~~~l~~~~ 267 (302)
T 3vov_A 217 LVLQAARYVGIGLASLVKAFDPGVVVLGGGVALNAPEGYWEALLEAYRRYL 267 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSEEEEESHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEeChhHhhhhHHHHHHHHHHHHHhc
Confidence 34556666666666655555788999998654 2 3557777777665543
No 52
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=36.14 E-value=50 Score=26.09 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHHHHHHH
Q 030017 40 ALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAE 85 (184)
Q Consensus 40 ~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~~ 85 (184)
.++++.+.++..+....+.-++..|||+|.-+..+.|.+.+.+.+.
T Consensus 219 il~~~~~~La~~i~~l~~~l~p~~IvlgGgv~~~~~~~~~l~~~~~ 264 (299)
T 2e2o_A 219 ILKQGAELLASQAVYLARKIGTNKVYLKGGMFRSNIYHKFFTLYLE 264 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEEEEESGGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCcHHHHHHHHHHCC
Confidence 3455555555555555554578899999965444556666665543
No 53
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=36.02 E-value=66 Score=22.10 Aligned_cols=45 Identities=7% Similarity=-0.125 Sum_probs=22.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHhcc-ccCCcceEEEeCCcccHHHHHHHHHHHH
Q 030017 33 AIAGYESALNKFFENVLQAFLKHV-DFNVVRCAVIASPGFTKDQFHRHLLLEA 84 (184)
Q Consensus 33 ~~s~~~~~~~~ff~~i~~~l~~~~-~~~~v~~ivIaGPGf~k~~f~~yl~~~~ 84 (184)
|+|.|.. +.+-+..|-+++.+.. +-.++ -||++||+ |++|+.+..
T Consensus 8 ~~~~rgd-lirIl~~ieekinELk~dG~eP-DIiL~G~e-----ayef~~e~v 53 (103)
T 2pk8_A 8 GSSTRGD-LIRILGEIEEKMNELKMDGFNP-DIILFGRE-----AYNFLSNLL 53 (103)
T ss_dssp --CHHHH-HHHHHHHHHHHHHHHHHTTCCC-CEEEECHH-----HHHHHHHHH
T ss_pred ccccccc-HHHHHHHHHHHHHHHHhcCCCC-CeEEEcHH-----HHHHHHHHH
Confidence 4444433 3444444444444332 11123 38889986 667777663
No 54
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=35.86 E-value=35 Score=27.58 Aligned_cols=29 Identities=3% Similarity=-0.200 Sum_probs=25.2
Q ss_pred CcEEeCHHHHHHHHhcc-CccEEEeecCCc
Q 030017 149 TRACYGPKHVEVAHERM-AVQTLLITDDLF 177 (184)
Q Consensus 149 ~~v~YG~~eV~~A~e~G-AVetLLisD~l~ 177 (184)
-..+||..-|.+|++.| .+++|+++++..
T Consensus 34 ~flveG~~~V~eaL~~~~~i~~l~~~~~~~ 63 (277)
T 3nk6_A 34 TTLIEDTEPLMECIRAGVQFIEVYGSSGTP 63 (277)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEETTSC
T ss_pred CEEEEeHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 45789999999999998 789999998764
No 55
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=35.49 E-value=97 Score=25.53 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhccccCCcceEEEeCCccc-HHHHHHHHHHHHHhc
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVRCAVIASPGFT-KDQFHRHLLLEAERR 87 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~-k~~f~~yl~~~~~~~ 87 (184)
..+++|...++..+....+.-++..|||+|+-.. .+.|.+.+.+.+.+.
T Consensus 293 ~~l~~~~~~La~~i~~l~~~ldP~~IvlgG~~~~~~~~l~~~l~~~l~~~ 342 (380)
T 2hoe_A 293 EYFDDIARYFSIGLLNLIHLFGISKIVIGGFFKELGENFLKKIKIEVETH 342 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEcCchhhhhHHHHHHHHHHHHHh
Confidence 3456666666666666555557889999997653 356666666665544
No 56
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=35.37 E-value=29 Score=28.22 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=28.2
Q ss_pred cCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 146 NDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 146 ~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
+.++.+..|.++|.+|++.|-+.-++|..|.
T Consensus 131 k~~~~L~~G~keV~KaIekgkAkLVIIA~Da 161 (266)
T 2zkr_f 131 KRPPVLRAGVNTVTTLVENKKAQLVVIAHDV 161 (266)
T ss_dssp SSCCCCCBSHHHHHHHHHTTCCSEEEEESCC
T ss_pred CCCCeeeeChHHHHHHHHhCCceEEEEecCC
Confidence 4578899999999999999999999999875
No 57
>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=34.37 E-value=78 Score=24.90 Aligned_cols=45 Identities=9% Similarity=0.094 Sum_probs=28.8
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+=|.|+..=. ...+.++.+++.+.-..+++++|||.|-|
T Consensus 15 Va~itlnrP~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~g 59 (258)
T 4fzw_A 15 VLLLTLNRPAARNALN-------NALLMQLVNELEAAATDTSISVCVITGNA 59 (258)
T ss_dssp EEEEEEECGGGTTCBC-------HHHHHHHHHHHHHHHTCTTCCEEEEECCS
T ss_pred EEEEEEcCCCccCCCC-------HHHHHHHHHHHHHHhhCCCeEEEEEeCCC
Confidence 4567778888854411 23444555555554444679999999876
No 58
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0
Probab=33.37 E-value=76 Score=25.15 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=26.7
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. . .++.++.+++.+.-..+++++|||.|.|
T Consensus 14 va~itlnrP~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 58 (268)
T 3i47_A 14 VGLLTMNRISKHNAFD---N----QLLTEMRIRLDSAINDTNVRVIVLKANG 58 (268)
T ss_dssp EEEEEECCTTTTTCBC---H----HHHHHHHHHHHHHHHCTTCSEEEEEECS
T ss_pred EEEEEECCCCcCCCCC---H----HHHHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 4567778888754411 2 2333444444443333579999999876
No 59
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=32.59 E-value=1e+02 Score=24.32 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=28.4
Q ss_pred cceEEEeC-CcccHHHHHHHHHHHHHhccchhhhhccCcEEEEecCCCcchhHHH
Q 030017 61 VRCAVIAS-PGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLRE 114 (184)
Q Consensus 61 v~~ivIaG-PGf~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E 114 (184)
...++++| ||.-|.-+...+...+. ..++.++.+..+...+++
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~-----------~~~~~i~~~~~~~~~i~~ 91 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVN-----------ADMMFVNGSDCKIDFVRG 91 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTT-----------EEEEEEETTTCCHHHHHT
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhC-----------CCEEEEcccccCHHHHHH
Confidence 45789999 99999999988876631 135556655544433333
No 60
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=32.11 E-value=58 Score=27.19 Aligned_cols=66 Identities=8% Similarity=-0.059 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHhccccC--CcceEEEeCCcccHHH-HHHHHHHHHHhccchhhhhccCcEEEEecCCCcchhHH
Q 030017 39 SALNKFFENVLQAFLKHVDFN--VVRCAVIASPGFTKDQ-FHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLR 113 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~--~v~~ivIaGPGf~k~~-f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~ 113 (184)
..++.|...++..+......- +++.|||+|.-.-... |.+.+.+.+.... .+.++.+..+...++.
T Consensus 272 ~~l~~~~~~la~~i~~l~~~l~~~p~~IvlgGgi~~~~~~l~~~i~~~l~~~~---------~~~i~~~~~~~~a~~~ 340 (381)
T 1saz_A 272 RVYRAMAYQIAKWIGKMAAVLKGEVDFIVLTGGLAHEKEFLVPWITKRVSFIA---------PVLVFPGSNEEKALAL 340 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCSEEEEEEGGGGCTTTHHHHHHHHHTTTS---------CEEEEEBCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcCccChHHHHHHHHHHHHhhc---------CeEEEecCcchhHHHH
Confidence 456778888888777766655 7899999995433233 5555655543321 3445555555444433
No 61
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}
Probab=31.97 E-value=67 Score=25.09 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=27.4
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+=|.|+..=. . ..+.++.+++.+.-..+++++|||.|-|
T Consensus 10 Va~itlnrP~~~NAl~---~----~m~~~L~~al~~~~~d~~vr~vVltg~g 54 (254)
T 3hrx_A 10 VLVLTLNRPEKLNAIT---G----ELLDALYAALKEGEEDREVRALLLTGAG 54 (254)
T ss_dssp EEEEEECCGGGTTCBC---H----HHHHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred EEEEEEcCCCcCCCCC---H----HHHHHHHHHHHHHHhCCCeEEEEEeCCC
Confidence 4577888888754411 2 2334444444444333579999998876
No 62
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=30.72 E-value=38 Score=23.77 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=28.4
Q ss_pred hcCCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 145 TNDPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 145 ~~~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
.+.|.....|.++|.+|++.|-+.-++|..+.
T Consensus 20 ~~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~ 51 (113)
T 3jyw_G 20 SPKPYAVKYGLNHVVALIENKKAKLVLIANDV 51 (113)
T ss_dssp SSSSSCEEESHHHHHHTTTTTCCSEEEECSCC
T ss_pred CCCCchhhchHHHHHHHHHcCCceEEEEeCCC
Confidence 45677889999999999999999999998765
No 63
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}
Probab=30.38 E-value=80 Score=25.33 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=27.4
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. ..++.++.+++.+.-..+++++|||.|.|
T Consensus 34 va~itlnrP~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~G 78 (290)
T 3sll_A 34 IALVTLNRPERMNAMA-------FDVMLPFKQMLVDISHDNDVRAVVITGAG 78 (290)
T ss_dssp EEEEEECCGGGTTCCC-------HHHHHHHHHHHHHHHTCTTCCEEEEEEST
T ss_pred EEEEEECCCCcCCCCC-------HHHHHHHHHHHHHHHcCCCeeEEEEECCC
Confidence 4567777787643311 23444555555554334579999998876
No 64
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A
Probab=29.60 E-value=77 Score=24.78 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=26.5
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. . ..+.++.+++.+.-..+++++|||.|.|
T Consensus 10 v~~itlnrp~~~Nal~---~----~~~~~l~~al~~~~~d~~vr~vVltg~g 54 (254)
T 3gow_A 10 VLVLTLNRPEKLNAIT---G----ELLDALYAALKEGEEDREVRALLLTGAG 54 (254)
T ss_dssp EEEEEECCGGGTTCBC---H----HHHHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred EEEEEECCCCcCCCCC---H----HHHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 4567777787754411 2 3344444444443333579999999876
No 65
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}
Probab=29.39 E-value=77 Score=25.17 Aligned_cols=45 Identities=11% Similarity=0.294 Sum_probs=26.8
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. . .++.++.+++.+.-...++++|||.|.|
T Consensus 30 v~~itlnrP~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 74 (278)
T 4f47_A 30 TLIVTMNRPSRRNALS---G----EMMQIMVEAWDRVDNDPDIRCCILTGAG 74 (278)
T ss_dssp EEEEEECCGGGTTCCC---H----HHHHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred EEEEEEcCCCccCCCC---H----HHHHHHHHHHHHHhcCCCeeEEEEECCC
Confidence 4567777787754421 2 3344444444443333579999998876
No 66
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Probab=29.12 E-value=77 Score=25.63 Aligned_cols=45 Identities=11% Similarity=0.004 Sum_probs=27.0
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. ..++.++.+++.+.-..+++++|||.|.|
T Consensus 40 Va~itlnrP~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~G 84 (298)
T 3qre_A 40 VAIITFNRADRLNAWG-------PDLAAGFYAAIDRAEADPGIRVIVLTGRG 84 (298)
T ss_dssp EEEEEECCGGGTTCCC-------HHHHHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred EEEEEECCCCCCCCCC-------HHHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 4567777787754411 23444444445444333579999999876
No 67
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}
Probab=28.73 E-value=91 Score=24.55 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=27.4
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ..++.++.+++.+.-...++++|||.|.|
T Consensus 19 v~~itlnrp~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~g 63 (265)
T 3kqf_A 19 VVKISLNRERQANSLS-------LALLEELQNILTQINEEANTRVVILTGAG 63 (265)
T ss_dssp EEEEEECCGGGTTCBC-------HHHHHHHHHHHHHHHTCTTCCEEEEEESS
T ss_pred EEEEEEcCCCCCCCCC-------HHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 4567777787754411 23444455555544333579999999876
No 68
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}
Probab=28.57 E-value=82 Score=24.81 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=27.2
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ..++.++.+++.+.-..+++++|||.|.|
T Consensus 19 v~~itlnrP~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~g 63 (265)
T 3rsi_A 19 VVILTMNRPHRRNALS-------TNMVSQFAAAWDEIDHDDGIRAAILTGAG 63 (265)
T ss_dssp EEEEEECCGGGTTCCC-------HHHHHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred EEEEEEcCcccccCCC-------HHHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 4567777787754421 23444444555444333579999998876
No 69
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=28.37 E-value=1.4e+02 Score=23.91 Aligned_cols=49 Identities=8% Similarity=-0.045 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhccccCCcc--------eEEEeCCcccH-HHHHHHHHHHHHhc
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVR--------CAVIASPGFTK-DQFHRHLLLEAERR 87 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~--------~ivIaGPGf~k-~~f~~yl~~~~~~~ 87 (184)
..++++.+.++..+....+.-++. .|||+|.-+.. +.|.+.+.+.+.+.
T Consensus 236 ~il~~~~~~La~~i~~l~~~~~p~~~~~~~~~~IvlgGgv~~~~~~~~~~~~~~l~~~ 293 (347)
T 2ch5_A 236 YIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQG 293 (347)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCGGGGCSTTCEEEEEESGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCceEEEECCcccCcHHHHHHHHHHHHhh
Confidence 345566666677776666666777 89999865433 45556666655543
No 70
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0
Probab=28.18 E-value=83 Score=24.86 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=26.9
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ..++.++.+++.+.-...++++|||.|.|
T Consensus 21 v~~itlnrp~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~g 65 (274)
T 3tlf_A 21 TATITLNRPDALNALS-------PHMITELRAAYHEAENDDRVWLLVVTGTG 65 (274)
T ss_dssp EEEEEECCGGGTTCBC-------HHHHHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred EEEEEECCccccCCCC-------HHHHHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 4567777787643311 23344444444443333579999999886
No 71
>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}
Probab=27.74 E-value=91 Score=25.90 Aligned_cols=45 Identities=9% Similarity=0.182 Sum_probs=27.9
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..=. ...+.++.+++.+.-..+++++|||.|-|
T Consensus 19 Va~itLnrP~~~NAl~-------~~m~~~l~~al~~~~~d~~vr~vvltg~G 63 (353)
T 4hdt_A 19 VGLLTLNRPKAINSLT-------HGMVTTMAERLAAWENDDSVRAVLLTGAG 63 (353)
T ss_dssp EEEEEECCGGGTTCBC-------HHHHHHHHHHHHHHHTCTTCCEEEEEESS
T ss_pred EEEEEEcCCCccCCCC-------HHHHHHHHHHHHHHHhCCCceEEEEEeCC
Confidence 4567778888754411 23444555555554444689999998765
No 72
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}
Probab=27.72 E-value=86 Score=24.66 Aligned_cols=45 Identities=20% Similarity=0.134 Sum_probs=27.0
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ..++.++.+++.+.-..+++++|||.|-|
T Consensus 19 v~~itlnrp~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~g 63 (265)
T 3swx_A 19 VLVIGLNRPAKRNAFD-------KTMLEELALALGEYETDTDLRAAVLYGEG 63 (265)
T ss_dssp EEEEEECCGGGTTCBC-------HHHHHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred EEEEEECCCcccCCCC-------HHHHHHHHHHHHHHhhCCCceEEEEECCC
Confidence 4567778887754411 23344444444443333579999999877
No 73
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0
Probab=27.23 E-value=93 Score=24.51 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=26.5
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. . .++.++.+++.+.-..+++++|||.|.|
T Consensus 17 v~~itlnrp~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 61 (265)
T 3qxz_A 17 VAVLTLHGPSTRNSFT---V----ELGRQLGAAYQRLDDDPAVRVIVLTGAP 61 (265)
T ss_dssp EEEEEEECGGGTSCBC---H----HHHHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred EEEEEEcCCccCCCCC---H----HHHHHHHHHHHHHhhCCCceEEEEECCC
Confidence 4567777787743311 2 3334444444443333579999999877
No 74
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=27.16 E-value=28 Score=27.38 Aligned_cols=46 Identities=4% Similarity=0.026 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhccccCCcceEEEeCCcccHHHHHHHHHHHHHh
Q 030017 41 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAER 86 (184)
Q Consensus 41 ~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k~~f~~yl~~~~~~ 86 (184)
++++.+.++..+....+.-++..|||+|.-...+.|.+.+.+.+.+
T Consensus 214 ~~~~~~~L~~~i~~l~~~l~p~~ivlgG~~~~~~~~~~~l~~~l~~ 259 (289)
T 2aa4_A 214 IHRSARTLARLIADIKATTDCQCVVVGGSVGLAEGYLALVETYLAQ 259 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEEHHHHTSTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeCcccccHHHHHHHHHHHHH
Confidence 4566666666666555555788899998654334556666666544
No 75
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=26.60 E-value=1.4e+02 Score=23.33 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=26.9
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.+ ..-. . .++.++.+++.+.-..+++++|||.|-|
T Consensus 17 v~~itlnrP~~-Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 60 (263)
T 3l3s_A 17 VLTLTLGRAPA-HPLS---R----AMIAALHDALRRAMGDDHVHVLVIHGPG 60 (263)
T ss_dssp EEEEEECSTTT-CCCC---H----HHHHHHHHHHHHHHTCTTCCEEEEECCS
T ss_pred EEEEEECCCCC-CCCC---H----HHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 45677788887 4421 2 3344444455444333579999999876
No 76
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A
Probab=26.60 E-value=93 Score=24.52 Aligned_cols=45 Identities=13% Similarity=0.042 Sum_probs=26.7
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. . ..+.++.+++.+.-..+++++|||.|-|
T Consensus 21 va~itlnrp~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 65 (262)
T 3r9q_A 21 VTTVILNRPHARNAVD---G----PTAAALLAAFTEFDADPEASVAVLWGDN 65 (262)
T ss_dssp EEEEEECCGGGTTCBC---H----HHHHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred EEEEEECCCCcCCCCC---H----HHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 4567777787754411 2 3344444444443333579999999877
No 77
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A
Probab=26.51 E-value=94 Score=24.43 Aligned_cols=45 Identities=7% Similarity=0.132 Sum_probs=26.8
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. . .++.++.+++.+.-..+++++|||.|.|
T Consensus 19 v~~itlnrp~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vvltg~g 63 (256)
T 3pe8_A 19 VRTLTLNRPQSRNALS---A----ELRSTFFRALSDAQNDDDVDVVIVTGAD 63 (256)
T ss_dssp EEEEEECCGGGTTCBC---H----HHHHHHHHHHHHHHHCTTCSEEEEEEST
T ss_pred EEEEEEcCCCCCCCCC---H----HHHHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 4567777787753311 2 3344444444444333579999999876
No 78
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}
Probab=25.73 E-value=97 Score=24.64 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=26.2
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. . .++.++.+++.+.-..+++++|||.|.|
T Consensus 38 v~~itlnrP~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 82 (276)
T 3rrv_A 38 LRIITLNRPDSLNSVN---D----DLHVGLARLWQRLTDDPTARAAVITGAG 82 (276)
T ss_dssp EEEEEECCGGGTTCBC---H----HHHHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred EEEEEECCCCCCCCCC---H----HHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 3567777787643311 2 3344444444443333579999999876
No 79
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}
Probab=25.58 E-value=1e+02 Score=24.37 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=26.7
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. ...+.++.+++.+.-..+++++|||.|-|
T Consensus 15 v~~itlnrP~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~g 59 (266)
T 3fdu_A 15 VLTLAINRPEAKNALY-------GELYLWIAKALDEADQNKDVRVVVLRGAE 59 (266)
T ss_dssp EEEEEECCGGGTTCBC-------HHHHHHHHHHHHHHHHCTTCCEEEEEESS
T ss_pred EEEEEECCCCccCCCC-------HHHHHHHHHHHHHHHhCCCcEEEEEECCC
Confidence 4567777787653311 23344444444443333579999999876
No 80
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}
Probab=25.54 E-value=1.1e+02 Score=24.40 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=27.2
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ..++.++.+++.+.-..+++++|||.|.|
T Consensus 36 va~itlnrP~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~G 80 (286)
T 3myb_A 36 VVTLTLNRPQAFNALS-------EAMLAALGEAFGTLAEDESVRAVVLAASG 80 (286)
T ss_dssp EEEEEECCGGGTTCBC-------HHHHHHHHHHHHHHHTCTTCCEEEEEECS
T ss_pred EEEEEECCCCccCCCC-------HHHHHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 3467777787643311 23444555555554344579999999876
No 81
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}
Probab=25.37 E-value=1e+02 Score=24.48 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=26.4
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. . .++.++.+++.+.-..+++++|||.|-|
T Consensus 27 v~~itlnrp~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 71 (279)
T 3g64_A 27 VATVTLARPDKLNALT---F----EAYADLRDLLAELSRRRAVRALVLAGEG 71 (279)
T ss_dssp EEEEEESCGGGTTCBC---H----HHHHHHHHHHHHHHHTTCCSEEEEEECS
T ss_pred EEEEEECCCcccCCCC---H----HHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 4567777787643311 2 3344444444443333579999998876
No 82
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0
Probab=25.35 E-value=1e+02 Score=24.21 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=26.6
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. . .++.++.+++.+.-..+++++|||.|-|
T Consensus 21 v~~itlnrp~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 65 (267)
T 3oc7_A 21 VARLTLNSPHNRNALS---T----ALVSQLHQGLRDASSDPAVRVVVLAHTG 65 (267)
T ss_dssp EEEEEECCGGGTSCBC---H----HHHHHHHHHHHHHHHCTTCCEEEEEECS
T ss_pred EEEEEecCCCccCCCC---H----HHHHHHHHHHHHHhcCCCceEEEEECCC
Confidence 4567777788753311 2 3344444444444333579999998866
No 83
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}
Probab=25.32 E-value=1e+02 Score=24.04 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=26.0
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. . .++.++.+++.+.-..+++++|||.|-|
T Consensus 16 v~~itlnrp~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 60 (256)
T 3qmj_A 16 VRTLTLNRPEALNAFN---E----ALYDATAQALLDAADDPQVAVVLLTGSG 60 (256)
T ss_dssp EEEEEECCGGGTTCBC---H----HHHHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred EEEEEECCCCccCCCC---H----HHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 4567777787754311 2 2333444444443333579999998876
No 84
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=25.30 E-value=49 Score=26.92 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=16.2
Q ss_pred CcceEEEeCCcccHHHHHHHHHHH
Q 030017 60 VVRCAVIASPGFTKDQFHRHLLLE 83 (184)
Q Consensus 60 ~v~~ivIaGPGf~k~~f~~yl~~~ 83 (184)
..+.|||.||| |+-+.+-|..+
T Consensus 99 ~~RpvVl~Gp~--K~tl~~~Ll~~ 120 (292)
T 3tvt_A 99 YTRPVIILGPL--KDRINDDLISE 120 (292)
T ss_dssp SCCCEEEESTT--HHHHHHHHHHH
T ss_pred CCCeEEEeCCC--HHHHHHHHHHh
Confidence 45789999999 77766655544
No 85
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}
Probab=25.28 E-value=1e+02 Score=24.10 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=26.9
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..=. ..++.++.+++.+.-..+++++|||.|-|
T Consensus 22 v~~itlnrp~~~Nal~-------~~~~~~l~~al~~~~~d~~vr~vVltg~g 66 (258)
T 3lao_A 22 LFLIGLDRAGKRNAFD-------SAMLADLALAMGEYERSEESRCAVLFAHG 66 (258)
T ss_dssp EEEEEECCGGGTTCBC-------HHHHHHHHHHHHHHHHCTTCCEEEEEESS
T ss_pred EEEEEEcCCCccCCCC-------HHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 4567777787753311 23344444444443333579999999987
No 86
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A
Probab=24.83 E-value=1e+02 Score=24.25 Aligned_cols=45 Identities=18% Similarity=0.096 Sum_probs=26.7
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..=. . ..+.++.+++.+.-..+++++|||.|-|
T Consensus 19 v~~itlnrP~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 63 (267)
T 3r9t_A 19 VMVITINRPEARNAIN---A----AVSIGVGDALEEAQHDPEVRAVVLTGAG 63 (267)
T ss_dssp EEEEEECCGGGTTCBC---H----HHHHHHHHHHHHHHHCTTCCEEEEEESS
T ss_pred EEEEEEcCCcccCCCC---H----HHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 4567778887654411 2 2344444444443333579999998876
No 87
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}
Probab=24.45 E-value=1.2e+02 Score=23.78 Aligned_cols=45 Identities=13% Similarity=0.016 Sum_probs=26.4
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ...+.++.+++.+.-...++++|||.|.|
T Consensus 20 v~~itlnrp~~~Nal~-------~~~~~~l~~al~~~~~d~~vr~vVltg~g 64 (263)
T 3moy_A 20 VGLIRLDRPDALNALN-------QTLEAEVLDAARDFDADLEIGAIVVTGSE 64 (263)
T ss_dssp EEEEEECCGGGTTCBC-------HHHHHHHHHHHHHHHHCTTCCEEEEECCS
T ss_pred EEEEEEcCCCccCCCC-------HHHHHHHHHHHHHHhcCCCceEEEEECCC
Confidence 4567777788754411 23344444444443333579999998865
No 88
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}
Probab=24.33 E-value=1.1e+02 Score=24.13 Aligned_cols=45 Identities=9% Similarity=0.057 Sum_probs=26.3
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. . .++.++.+++.+.-..+++++|||.|.|
T Consensus 25 v~~itlnrp~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 69 (265)
T 3qxi_A 25 ILIITINRPKAKNSVN---A----AVSRALADAMDRLDADAGLSVGILTGAG 69 (265)
T ss_dssp EEEEEECCGGGTTCBC---H----HHHHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred EEEEEECCCCcCCCCC---H----HHHHHHHHHHHHHHhCCCcEEEEEECCC
Confidence 4567777787654311 2 2334444444443333579999999877
No 89
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}
Probab=24.32 E-value=98 Score=24.25 Aligned_cols=45 Identities=13% Similarity=0.054 Sum_probs=26.8
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ...+.++.+++.+.-..+++++|||.|.|
T Consensus 17 v~~itlnrp~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~g 61 (256)
T 3trr_A 17 VLLITINRPDARNAVN-------RAVSQGLAAAADQLDSSADLSVAIITGAG 61 (256)
T ss_dssp EEEEEECCGGGTTCBC-------HHHHHHHHHHHHHHHHCTTCCEEEEEEGG
T ss_pred EEEEEEcCCCcCCCCC-------HHHHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 4567777787653311 23344444444443333579999999877
No 90
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=24.30 E-value=1e+02 Score=23.70 Aligned_cols=44 Identities=5% Similarity=-0.104 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhccccCC-cceEEEeCCcccHHHHHHHHHHHH
Q 030017 41 LNKFFENVLQAFLKHVDFNV-VRCAVIASPGFTKDQFHRHLLLEA 84 (184)
Q Consensus 41 ~~~ff~~i~~~l~~~~~~~~-v~~ivIaGPGf~k~~f~~yl~~~~ 84 (184)
...+++.+.+.+.+.+.... ++.|++.|=+-.-..|.+++.+.+
T Consensus 206 ~~~~~~~i~~~i~~~l~~~~~~~~ivL~GG~a~~~~l~~~l~~~l 250 (272)
T 3h1q_A 206 VRPVIEKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL 250 (272)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSSCCEEEESGGGGSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEECCccchhhHHHHHHHHh
Confidence 44556666666776665555 778888875543344556666654
No 91
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A
Probab=24.20 E-value=1.1e+02 Score=25.34 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=27.4
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. . .++.++.+++.+.-...++++|||.|-|
T Consensus 67 Va~ItlnrP~~~NAl~---~----~~~~eL~~al~~~~~d~~vrvVVltG~G 111 (334)
T 3t8b_A 67 TVRVAFNRPEVRNAFR---P----HTVDELYRVLDHARMSPDVGVVLLTGNG 111 (334)
T ss_dssp EEEEEECCGGGTTCCC---H----HHHHHHHHHHHHHHHCTTCCEEEEEECC
T ss_pred EEEEEEcCCCCCCCCC---H----HHHHHHHHHHHHHHhCCCceEEEEeCCC
Confidence 4567778888754421 2 3344444455443333579999999876
No 92
>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}
Probab=24.06 E-value=1e+02 Score=24.21 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=25.7
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ..++.++.+++.+.-...++++|||.|.|
T Consensus 14 v~~itlnrp~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~g 58 (263)
T 3lke_A 14 ALYITLDYPEKKNGLD-------AELGTSLLEAIRAGNNETSIHSIILQSKH 58 (263)
T ss_dssp EEEEEECCGGGTTBCC-------HHHHHHHHHHHHHHHHCSSCCEEEEEESC
T ss_pred EEEEEECCCCCCCCCC-------HHHHHHHHHHHHHHhcCCCeEEEEEEcCC
Confidence 4567777787643311 23344444444443333579999998765
No 93
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Probab=23.77 E-value=1.1e+02 Score=24.13 Aligned_cols=45 Identities=13% Similarity=-0.042 Sum_probs=26.7
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..=. ..++.++.+++.+.-..+++++|||.|-|
T Consensus 19 v~~itlnrp~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~g 63 (280)
T 1pjh_A 19 FFIIHLINPDNLNALE-------GEDYIYLGELLELADRNRDVYFTIIQSSG 63 (280)
T ss_dssp EEEEEECCGGGTTCBC-------HHHHHHHHHHHHHHHHCTTCCEEEEECBT
T ss_pred EEEEEECCCcccCCCC-------HHHHHHHHHHHHHHhcCCCceEEEEECCC
Confidence 4567777887643311 23444555555444333579999999865
No 94
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A
Probab=23.60 E-value=1.1e+02 Score=24.49 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=26.3
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. . .++.++.+++.+.-...++++|||.|-|
T Consensus 38 va~itlnrP~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~G 82 (289)
T 3t89_A 38 IAKITINRPQVRNAFR---P----LTVKEMIQALADARYDDNIGVIILTGAG 82 (289)
T ss_dssp EEEEEECCGGGTTCBC---H----HHHHHHHHHHHHHHHCTTCCEEEEEESS
T ss_pred EEEEEECCCCcCCCCC---H----HHHHHHHHHHHHHHhCCCceEEEEEcCC
Confidence 4567777888754311 2 2333444444443333579999999866
No 95
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}
Probab=23.49 E-value=1.5e+02 Score=23.74 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=28.9
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ..++.++.+++.+.-...++++|||.|-|
T Consensus 43 V~~itlnrP~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~g 87 (287)
T 2vx2_A 43 IRNIVLSNPKKRNTLS-------LAMLKSLQSDILHDADSNDLKVIIISAEG 87 (287)
T ss_dssp EEEEEECCGGGTTCCC-------HHHHHHHHHHHHTTTTCTTCCEEEEEESS
T ss_pred EEEEEECCCCCCCCCC-------HHHHHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 4566777777643311 24555666667665444679999999865
No 96
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*
Probab=23.49 E-value=1.5e+02 Score=22.88 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=25.2
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeC-Cc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIAS-PG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaG-PG 70 (184)
+..|+-+-|.++..-. . .++.++.+++.+.-..+++++|||.| .|
T Consensus 10 v~~itlnrp~~~Nal~---~----~~~~~l~~al~~~~~d~~vr~vVltg~~g 55 (250)
T 2a7k_A 10 VRVITLDHPNKHNPFS---R----TLETSVKDALARANADDSVRAVVVYGGAE 55 (250)
T ss_dssp EEEEEECCSSTTCBCC---H----HHHHHHHHHHHHHHHCTTCCEEEEECCTT
T ss_pred EEEEEecCCCccCCCC---H----HHHHHHHHHHHHHHhCCCcEEEEEECCCC
Confidence 3566777787643311 2 23334444444433335799999999 54
No 97
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}
Probab=23.49 E-value=96 Score=24.27 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=26.2
Q ss_pred EEEEEeeCCCCCCC-CcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGP-AIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~-~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++.. + . .++.++.+++.+.-..+++++|||.|.|
T Consensus 16 v~~itlnrp~~~Nal~----~----~~~~~L~~al~~~~~d~~vr~vVltg~g 60 (255)
T 3p5m_A 16 VLRIRLDRPEKLNAVD----T----PMLEELSVHIRDAEADESVRAVLLTGAG 60 (255)
T ss_dssp EEEEEECCGGGTTEEC----H----HHHHHHHHHHHHHHHCTTCCEEEEEESS
T ss_pred EEEEEECCCCcCCCCC----H----HHHHHHHHHHHHHhhCCCeEEEEEECCC
Confidence 45677777876433 2 2 2344444444443333579999999877
No 98
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*
Probab=23.46 E-value=1.5e+02 Score=23.63 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=26.9
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ...+.++.+++.+.-...++++|||.|.|
T Consensus 35 va~itlnrp~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~g 79 (278)
T 3h81_A 35 VGIITLNRPQALNALN-------SQVMNEVTSAATELDDDPDIGAIIITGSA 79 (278)
T ss_dssp EEEEEECCGGGTTCBC-------HHHHHHHHHHHHHHHTCTTCCEEEEECCS
T ss_pred EEEEEECCCCCCCCCC-------HHHHHHHHHHHHHHhhCCCeEEEEEECCC
Confidence 4567777787643311 23444445555444333579999998865
No 99
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A
Probab=23.18 E-value=92 Score=25.54 Aligned_cols=45 Identities=13% Similarity=0.052 Sum_probs=27.2
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. ..++.++.+++.+.-..+++++|||.|.|
T Consensus 45 Va~ItLnrP~~~NAl~-------~~m~~eL~~al~~~~~d~~vrvvVltG~G 89 (333)
T 3njd_A 45 VARITFNRPEKGNAIV-------ADTPLELSALVERADLDPDVHVILVSGRG 89 (333)
T ss_dssp EEEEEECCGGGTTCBC-------THHHHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred EEEEEeCCCCccCCCC-------HHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 4567777787643311 13444455555444333579999999876
No 100
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=22.98 E-value=57 Score=26.38 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=16.3
Q ss_pred ceEEEeCCcccHHHHHHHHHHH
Q 030017 62 RCAVIASPGFTKDQFHRHLLLE 83 (184)
Q Consensus 62 ~~ivIaGPGf~k~~f~~yl~~~ 83 (184)
+.|||.||| |+-+.+.|...
T Consensus 106 r~ivl~GPg--K~tl~~~L~~~ 125 (295)
T 1kjw_A 106 RPIIILGPT--KDRANDDLLSE 125 (295)
T ss_dssp CCEEEESTT--HHHHHHHHHHH
T ss_pred CEEEEECCC--HHHHHHHHHhh
Confidence 679999998 88887777665
No 101
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*
Probab=22.91 E-value=1.2e+02 Score=23.92 Aligned_cols=45 Identities=9% Similarity=0.084 Sum_probs=27.1
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..=. ..++.++.+++.+.-..+++++|||.|-|
T Consensus 19 v~~itlnrp~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~g 63 (276)
T 2j5i_A 19 IAFVILNRPEKRNAMS-------PTLNREMIDVLETLEQDPAAGVLVLTGAG 63 (276)
T ss_dssp EEEEEECCGGGTTCBC-------HHHHHHHHHHHHHHHTCTTEEEEEEEEST
T ss_pred EEEEEEcCCCCCCCCC-------HHHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 4567778887754311 13444455555544333579999999865
No 102
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=22.83 E-value=48 Score=25.23 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=43.3
Q ss_pred eEEEeCCcccHHHHHHHHHHHHHhccchhhhhccCcEEEEecCCCcchhHHHHhcCch-----hHHHhhhhhHHHHHHHH
Q 030017 63 CAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPN-----VMNMIKDTKAAQEVQAL 137 (184)
Q Consensus 63 ~ivIaGPGf~k~~f~~yl~~~~~~~~~~~l~~~~~k~~~v~~s~~~~~gl~E~l~~~~-----v~~~l~~~k~~~e~~~l 137 (184)
-|++++||-=|--..+.|.+.. -+.+.|.|.. |++.+++++ ++..+..-+++...-++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~---------------g~~~istGdl--lR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~ 65 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK---------------GFVHISTGDI--LREAVQKGTPLGKKAKEYMERGELVPDDLII 65 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH---------------CCEEEEHHHH--HHHHHHHTCHHHHHHHHHHHHTCCCCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH---------------CCeEEcHHHH--HHHHHHhcChhhhhHHHHHhcCCcCCHHHHH
Confidence 4788999998887777776652 1345555544 565554431 22233333333333355
Q ss_pred HHHHHHhhcCCCcEEeCH
Q 030017 138 KDFFNMLTNDPTRACYGP 155 (184)
Q Consensus 138 e~f~~~l~~~~~~v~YG~ 155 (184)
+-+.+.+.+..+-+.-|+
T Consensus 66 ~lv~~~l~~~~~~ilDGf 83 (206)
T 3sr0_A 66 ALIEEVFPKHGNVIFDGF 83 (206)
T ss_dssp HHHHHHCCSSSCEEEESC
T ss_pred HHHHHhhccCCceEecCC
Confidence 556666776666665564
No 103
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A
Probab=22.83 E-value=1.4e+02 Score=23.55 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=26.7
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..=. ..++.++.+++.+.-...++++|||.|-|
T Consensus 14 v~~itlnrP~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~g 58 (275)
T 1dci_A 14 VLHVQLNRPEKRNAMN-------RAFWRELVECFQKISKDSDCRAVVVSGAG 58 (275)
T ss_dssp EEEEEECCGGGTTCBC-------HHHHHHHHHHHHHHHTCTTCCEEEEEEST
T ss_pred EEEEEECCCcccCCCC-------HHHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 4567777787753311 23444444455444333579999999865
No 104
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=22.14 E-value=1.1e+02 Score=25.19 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHhcc-ccCCcceEEEeCCc
Q 030017 37 YESALNKFFENVLQAFLKHV-DFNVVRCAVIASPG 70 (184)
Q Consensus 37 ~~~~~~~ff~~i~~~l~~~~-~~~~v~~ivIaGPG 70 (184)
.+++++.++++|.+.+.+.+ +.+.+++|+++|=|
T Consensus 266 i~~a~~~~~~~I~~~i~~~l~~~~~~~~Ivl~GGG 300 (355)
T 3js6_A 266 FYKEQDSLIEEVMSNFEITVGNINSIDRIIVTGGG 300 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSCSEEEEESTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhhccEEEEECcc
Confidence 56788999999999998876 33567899999977
No 105
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3
Probab=21.99 E-value=1.3e+02 Score=23.30 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=25.6
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..=. . ..+.++.+++.+.-..+++++|||.|-|
T Consensus 9 v~~itlnrp~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 53 (253)
T 1uiy_A 9 VAVVFLNDPERRNPLS---P----EMALSLLQALDDLEADPGVRAVVLTGRG 53 (253)
T ss_dssp EEEEEECCGGGTCCCC---H----HHHHHHHHHHHHHHHCTTCCEEEEEESS
T ss_pred EEEEEECCCCccCCCC---H----HHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 4567777787643311 2 2334444444443333579999999864
No 106
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=21.85 E-value=99 Score=24.92 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=26.7
Q ss_pred CCCcEEeCHHHHHHHHhccCccEEEeecCC
Q 030017 147 DPTRACYGPKHVEVAHERMAVQTLLITDDL 176 (184)
Q Consensus 147 ~~~~v~YG~~eV~~A~e~GAVetLLisD~l 176 (184)
.|....+|.++|.+|++.|-+.-++|..|.
T Consensus 128 ~p~~lk~G~keV~KaIekgKAkLVVIA~Da 157 (256)
T 3izc_H 128 KPYAVKYGLNHVVALIENKKAKLVLIANDV 157 (256)
T ss_dssp CSCCEEESHHHHHHHHHHTCCSEEEEESCC
T ss_pred CChhhhccHHHHHHHHHhCcceEEEEeCCC
Confidence 456678999999999999999999998875
No 107
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=21.73 E-value=67 Score=25.73 Aligned_cols=32 Identities=6% Similarity=0.012 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhccccCCcceEEEeCCccc
Q 030017 41 LNKFFENVLQAFLKHVDFNVVRCAVIASPGFT 72 (184)
Q Consensus 41 ~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~ 72 (184)
+++|.+.++..+....+.-+++.|||+|.-+.
T Consensus 250 l~~~~~~La~~i~~l~~~l~p~~IvlgG~i~~ 281 (327)
T 2ap1_A 250 VERYLDLLAVCLGNILTIVDPDLLVIGGGLSN 281 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEESGGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeChhhc
Confidence 45666666666665555556888999986543
No 108
>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A
Probab=21.73 E-value=1.3e+02 Score=23.81 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=26.5
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..=. ..++.++.+++.+.-..+++++|||.|-|
T Consensus 30 v~~itlnrP~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~G 74 (279)
T 3t3w_A 30 IATITLNRPEAANAQN-------PELLDELDAAWTRAAEDNDVSVIVLRANG 74 (279)
T ss_dssp EEEEEECCGGGTTCBC-------HHHHHHHHHHHHHHHHCTTCCEEEEEECS
T ss_pred EEEEEECCCCCCCCCC-------HHHHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 4567777787643311 23344444444443333579999999876
No 109
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}
Probab=21.57 E-value=1.3e+02 Score=23.35 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=25.7
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..=. . ..+.++.+++.+.-..+++++|||.|.|
T Consensus 13 v~~itlnrp~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 57 (257)
T 2ej5_A 13 VAWLTLNRPDQLNAFT---E----QMNAEVTKALKQAGADPNVRCVVITGAG 57 (257)
T ss_dssp EEEEEECCGGGTTCBC---H----HHHHHHHHHHHHHHHCTTCCEEEEEESS
T ss_pred EEEEEECCCCccCCCC---H----HHHHHHHHHHHHHhhCCCeEEEEEECCC
Confidence 4566777787643311 2 2334444444443333579999999865
No 110
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*
Probab=21.48 E-value=1.3e+02 Score=23.54 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=25.8
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..=. . .++.++.+++.+.-..+++++|||.|-|
T Consensus 13 v~~itlnrp~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 57 (269)
T 1nzy_A 13 VAEITIKLPRHRNALS---V----KAMQEVTDALNRAEEDDSVGAVMITGAE 57 (269)
T ss_dssp EEEEEECCGGGTTCBC---H----HHHHHHHHHHHHHHHCTTCCEEEEEEST
T ss_pred EEEEEECCCCccCCCC---H----HHHHHHHHHHHHHhhCCCeeEEEEECCC
Confidence 4566777787643311 2 3334444444443333579999999865
No 111
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=21.30 E-value=1e+02 Score=21.73 Aligned_cols=20 Identities=10% Similarity=-0.029 Sum_probs=12.9
Q ss_pred CcceEEEeCCcccHHHHHHH
Q 030017 60 VVRCAVIASPGFTKDQFHRH 79 (184)
Q Consensus 60 ~v~~ivIaGPGf~k~~f~~y 79 (184)
+.+.+.+|||-.+-+...+.
T Consensus 107 ~~~~vy~CGP~~Mm~av~~~ 126 (142)
T 3lyu_A 107 DWDLVFMVGPVGDQKQVFEV 126 (142)
T ss_dssp CCSEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHH
Confidence 45579999998444444433
No 112
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*
Probab=21.28 E-value=1.6e+02 Score=23.04 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=26.0
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. . ..+.++.+++.+.-..+++++|||.|-|
T Consensus 17 v~~itlnrp~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 61 (260)
T 1mj3_A 17 VGLIQLNRPKALNALC---N----GLIEELNQALETFEEDPAVGAIVLTGGE 61 (260)
T ss_dssp EEEEEECCGGGTTCBC---H----HHHHHHHHHHHHHHHCTTCCEEEEECCS
T ss_pred EEEEEEcCCCccCCCC---H----HHHHHHHHHHHHHHhCCCeeEEEEECCC
Confidence 3457778887643311 2 3334444444443333579999999865
No 113
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D
Probab=21.01 E-value=1.4e+02 Score=23.52 Aligned_cols=45 Identities=11% Similarity=0.032 Sum_probs=26.5
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.++..-. ..++.++.+++.+.-..+++++|||.|-|
T Consensus 34 Va~ItLnrP~~~Nal~-------~~~~~~L~~al~~~~~d~~vr~vVltg~g 78 (263)
T 2j5g_A 34 ILEVRMHTNGSSLVFT-------GKTHREFPDAFYDISRDRDNRVVILTGSG 78 (263)
T ss_dssp EEEEEECBTTBSCEEC-------HHHHHHHHHHHHHHHHCTTCCEEEEECBT
T ss_pred EEEEEECCCCCCCCCC-------HHHHHHHHHHHHHHHhCCCcEEEEEECCC
Confidence 4567777787643311 23444555555544333579999999865
No 114
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=20.96 E-value=98 Score=25.38 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhccccCCcceEEEeCCcccH-HHHHH--HHHHHHHh
Q 030017 39 SALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTK-DQFHR--HLLLEAER 86 (184)
Q Consensus 39 ~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPGf~k-~~f~~--yl~~~~~~ 86 (184)
+.+++|.+.++..+....+.-++..|||+|....+ +.|.+ -+.+.+.+
T Consensus 283 ~~l~~~~~~L~~~i~~l~~~l~p~~IvlgGG~~~~~~~~~~~~~i~~~l~~ 333 (373)
T 2q2r_A 283 KAMKKYHEYLMRVGSEASMALLPLTIVLVGDNIVNNAFFYRNPQNLKEMHH 333 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSEEEECSHHHHHTHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEeCChHhCchhhhcchhHHHHHHH
Confidence 45666777777766666555578889997754443 34444 44444433
No 115
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}
Probab=20.84 E-value=1.4e+02 Score=23.55 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=25.8
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. . ..+.++.+++.+.-...++++|||.|-|
T Consensus 23 va~itlnrp~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 67 (273)
T 2uzf_A 23 IAKVTINRPEVRNAFT---P----KTVAEMIDAFSRARDDQNVSVIVLTGEG 67 (273)
T ss_dssp EEEEEECCGGGTTCCC---H----HHHHHHHHHHHHHHHCTTCCEEEEEESS
T ss_pred EEEEEEcCCCCCCCCC---H----HHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 4567777787643311 2 2334444444443333579999999865
No 116
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}
Probab=20.76 E-value=1.5e+02 Score=23.38 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=26.5
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. ...+.++.+++.+.-+ +++++|||.|-|
T Consensus 31 v~~itlnrP~~~Nal~-------~~~~~~L~~al~~~~~-d~vr~vVltg~G 74 (264)
T 3he2_A 31 VLTIELQRPERRNALN-------SQLVEELTQAIRKAGD-GSARAIVLTGQG 74 (264)
T ss_dssp EEEEEECCGGGTTCBC-------HHHHHHHHHHHHCC----CCSEEEEEESS
T ss_pred EEEEEECCCCCCCCCC-------HHHHHHHHHHHHHHhh-CCceEEEEECCC
Confidence 3567777787643311 2455566666665443 389999998876
No 117
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A
Probab=20.42 E-value=1.4e+02 Score=23.15 Aligned_cols=45 Identities=9% Similarity=0.070 Sum_probs=25.9
Q ss_pred EEEEEeeCCCCCCCCcchhHHHHHHHHHHHHHHHHhccccCCcceEEEeCCc
Q 030017 19 RSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPG 70 (184)
Q Consensus 19 ~~~i~~~ip~K~~~~~s~~~~~~~~ff~~i~~~l~~~~~~~~v~~ivIaGPG 70 (184)
+..|+-+-|.|+..-. . .++.++.+++.+.-..+++++|||.|-|
T Consensus 13 v~~itlnrp~~~Nal~---~----~~~~~L~~al~~~~~d~~vr~vVltg~g 57 (243)
T 2q35_A 13 VVQITMKDESSRNGFS---P----SIVEGLRHCFSVVAQNQQYKVVILTGYG 57 (243)
T ss_dssp EEEEEECCGGGTSBSC---H----HHHHHHHHHHHHHHHCTTCCEEEEECBT
T ss_pred EEEEEECCCCCCCCCC---H----HHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 4567777787643311 2 3344444444443333579999999865
Done!