BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030018
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQ55|DRP2B_ARATH Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2
Length = 920
Score = 249 bits (635), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 137/185 (74%), Positives = 151/185 (81%), Gaps = 8/185 (4%)
Query: 1 MSQEVRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQ 60
MSQEVRGY EAVLNSLA NV KAVVLCQVEK+KEDMLNQLYSS+ A RIE L+QEDQ
Sbjct: 740 MSQEVRGYVEAVLNSLAANVPKAVVLCQVEKSKEDMLNQLYSSISAIGNERIESLIQEDQ 799
Query: 61 NVKRRRDRYQKQSELLSKLTRQLSIHDNRAAAASNWSDGGGGAESSPRTSA-ASGDDWRS 119
NVKRRRDRYQKQS LLSKLTRQLSIHDNRAAAAS+WSD G ESSPRT+ +SG+DW +
Sbjct: 800 NVKRRRDRYQKQSSLLSKLTRQLSIHDNRAAAASSWSDNSG-TESSPRTNGGSSGEDWMN 858
Query: 120 AFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRSGSNSGSRRT-PNRVPPPPPPTQ 178
AF+AAA+GP SL+ Y S GHSRRYSDPA+NG+ SGS SRRT PNR+PP PP Q
Sbjct: 859 AFNAAASGPDSLKRY---GSGGHSRRYSDPAQNGEDSSGSGGSSRRTTPNRLPPAPP--Q 913
Query: 179 SGSKY 183
SGS Y
Sbjct: 914 SGSSY 918
>sp|Q9SE83|DRP2A_ARATH Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2
Length = 914
Score = 237 bits (605), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/185 (72%), Positives = 148/185 (80%), Gaps = 5/185 (2%)
Query: 1 MSQEVRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQ 60
MSQEVRGY EAVLNSLA NV KAVVLCQVEKAKEDMLNQLYSS+ A RIE L+QEDQ
Sbjct: 733 MSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAIGNERIESLIQEDQ 792
Query: 61 NVKRRRDRYQKQSELLSKLTRQLSIHDNRAAAASNWSDGGGGAESSPRTS-AASGDDWRS 119
NVKRRR+RYQKQS LLSKLTRQLSIHDNRAAAAS++SD G ESSPR S +SGDDW +
Sbjct: 793 NVKRRRERYQKQSSLLSKLTRQLSIHDNRAAAASSYSD-NSGTESSPRASGGSSGDDWMN 851
Query: 120 AFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRS-GSNSGSRRTPNRVPPPPPPTQ 178
AF++AANGP S S+ S GHSRRYSDPA+NGD S GS S R TPNR+PP PPPT
Sbjct: 852 AFNSAANGPSD--SLSKYGSGGHSRRYSDPAQNGDAASPGSGSNRRTTPNRLPPAPPPTG 909
Query: 179 SGSKY 183
S +Y
Sbjct: 910 SAYRY 914
>sp|Q8LF21|DRP1C_ARATH Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1
SV=2
Length = 614
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 5 VRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKR 64
V Y V ++L ++ KAVV CQV +AK +LN Y+ VG + ++ +L ED +
Sbjct: 530 VSAYINMVCDTLRNSLPKAVVYCQVREAKRSLLNFFYAQVGRKEKEKLGAMLDEDPQLME 589
Query: 65 RRDRYQKQSEL 75
RR K+ EL
Sbjct: 590 RRGTLAKRLEL 600
>sp|Q39828|SDL5A_SOYBN Dynamin-related protein 5A OS=Glycine max PE=2 SV=1
Length = 610
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 5 VRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKR 64
+ Y V +L ++ K++V CQV +AK +L+ ++ +G T R+ LL ED +
Sbjct: 525 ILSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELGKMETKRLSSLLNEDPAIME 584
Query: 65 RRDRYQKQSEL 75
RR K+ EL
Sbjct: 585 RRSALAKRLEL 595
>sp|Q84XF3|DRP1B_ARATH Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2
SV=1
Length = 610
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 5 VRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKR 64
V Y V L ++ K++V CQV +AK +L+ ++ +G + +++ +LL ED V++
Sbjct: 525 VLSYVNMVCAGLRNSIPKSIVYCQVREAKRSLLDIFFTELGQKEMSKLSKLLDEDPAVQQ 584
Query: 65 RRDRYQKQSEL 75
RR K+ EL
Sbjct: 585 RRTSIAKRLEL 595
>sp|Q8S3C9|DRP1D_ARATH Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2
SV=2
Length = 612
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 1 MSQEVRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQ 60
++ V Y + V +L + KAVV CQV +AK +LN Y+ + R+ +LL E+
Sbjct: 523 IASNVAAYIKMVAETLVNTIPKAVVHCQVRQAKLSLLNYFYAQISQSQGKRLGQLLDENP 582
Query: 61 NVKRRRDRYQKQSELLSK 78
+ RR + K+ EL K
Sbjct: 583 ALMERRMQCAKRLELYKK 600
>sp|Q39821|SDLCA_SOYBN Dynamin-related protein 12A OS=Glycine max PE=1 SV=1
Length = 610
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 5 VRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKR 64
+ Y V +L ++ K++V CQV +AK +L+ ++ +G R+ LL ED +
Sbjct: 525 ILSYVNMVCATLRHSIPKSIVYCQVREAKRSLLDHFFTELGKMEIKRLSSLLNEDPAIME 584
Query: 65 RRDRYQKQSEL 75
RR K+ EL
Sbjct: 585 RRSALAKRLEL 595
>sp|P42697|DRP1A_ARATH Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1
SV=3
Length = 610
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 5 VRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKR 64
V Y V L ++ K++V CQV +AK +L+ ++ +G R+ LL ED +
Sbjct: 525 VLSYVNMVCAGLRNSIPKSIVYCQVREAKRSLLDHFFAELGTMDMKRLSSLLNEDPAIME 584
Query: 65 RRDRYQKQSEL 75
RR K+ EL
Sbjct: 585 RRSAISKRLEL 595
>sp|Q9FNX5|DRP1E_ARATH Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1
SV=1
Length = 624
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 1 MSQEVRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQ 60
++ V Y V ++L + KA V CQV +AK +LN YS + + ++ +LL ED
Sbjct: 535 IASNVSAYVNMVSDTLRNTIPKACVYCQVRQAKLALLNYFYSQISKREGKQLGQLLDEDP 594
Query: 61 NVKRRRDRYQKQSELLSK 78
+ RR K+ EL K
Sbjct: 595 ALMDRRLECAKRLELYKK 612
>sp|Q8S944|DRP3A_ARATH Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1
SV=2
Length = 808
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 5 VRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKR 64
+R Y++ V ++ +V KA++ V K ++ N + ++ EE+LQE +
Sbjct: 677 LRSYYDIVRKNIEDSVPKAIMHFLVNHTKRELHNVFIKKLYRENL--FEEMLQEPDEIAV 734
Query: 65 RRDRYQKQSELLSKLTRQL 83
+R R Q+ +L + R L
Sbjct: 735 KRKRTQETLHVLQQAYRTL 753
>sp|Q6P5D8|SMHD1_MOUSE Structural maintenance of chromosomes flexible hinge
domain-containing protein 1 OS=Mus musculus GN=Smchd1
PE=1 SV=2
Length = 2007
Score = 32.3 bits (72), Expect = 2.1, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 27 CQVEKAK---EDMLNQLYSS----VGAQSTARIEELLQE---DQNVKRRRDR-------Y 69
CQ E+AK + N+L + Q T IE LL++ +QN ++R R Y
Sbjct: 1657 CQAEEAKLKETQLRNELKAYNIDIPATQQTTHIEALLEKKITEQNELKKRPRRLCTLPNY 1716
Query: 70 QKQS-ELLSKLTRQLSIHDNRAAAASNW 96
K+S ++L K+ I D+RAA +W
Sbjct: 1717 TKRSGDILGKIAHLAQIEDDRAAMVISW 1744
>sp|P21576|VPS1_YEAST Vacuolar protein sorting-associated protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS1 PE=1
SV=2
Length = 704
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 5 VRGYFEAVLNSLATNVSKAVVLCQVEKAKED----MLNQLYSSVGAQSTARIEELLQEDQ 60
+ YF V ++A + KA++L + K+K D +L +LY G Q IEEL +E+
Sbjct: 625 ISSYFSIVKRTIADIIPKALMLKLIVKSKTDIQKVLLEKLY---GKQD---IEELTKEND 678
Query: 61 NVKRRRDRYQKQSELLSKLTRQLS 84
+RR +K E+L ++ +S
Sbjct: 679 ITIQRRKECKKMVEILRNASQIVS 702
>sp|Q9URZ5|VPS1_SCHPO Vacuolar protein sorting-associated protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps1 PE=3 SV=2
Length = 678
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 5 VRGYFEAVLNSLATNVSKAVVLCQVEKAKE----DMLNQLYSSVGAQSTARIEELLQEDQ 60
+ YF V +LA V K++ L ++ +KE ++L QLY S ++LLQE +
Sbjct: 599 IMSYFNIVKRTLADMVPKSISLKMIKYSKEHIQHELLEQLYKSQA------FDKLLQESE 652
Query: 61 -NVKRRRDRYQKQSELL 76
V+RR++ Q LL
Sbjct: 653 VTVQRRKECEQMVESLL 669
>sp|P32334|MSB2_YEAST Signaling mucin MSB2 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=MSB2 PE=1 SV=1
Length = 1306
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 2 SQEVRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQ-STARIEEL 55
S ++ GY LN+ NV + + Q+ ++D LN L S TA IEEL
Sbjct: 1028 SAQIFGYLPEALNTPFKNVFTNITVLQIVPLQDDSLNYLVSVAEVYFPTAEIEEL 1082
>sp|P39812|GLTA_BACSU Glutamate synthase [NADPH] large chain OS=Bacillus subtilis (strain
168) GN=gltA PE=2 SV=3
Length = 1520
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 36 MLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNRAAAASN 95
L L++ G + ++EE+ + VKR + L + L+I NR SN
Sbjct: 835 FLRNLFAFDGNRKPLKLEEVESAESIVKRFKTGAMSFGSLSKEAHEALAIAMNRLGGKSN 894
Query: 96 WSDGGGGAESSPRTSAASGDDWRSAFDAAANGPVSLRSY 134
G GG + +GDD RSA A+G ++S+
Sbjct: 895 --SGEGGEDPKRFVPDENGDDRRSAIKQIASGRFGVKSH 931
>sp|P54861|DNM1_YEAST Dynamin-related protein DNM1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DNM1 PE=1 SV=1
Length = 757
Score = 30.8 bits (68), Expect = 5.6, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 8 YFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRD 67
YF+ + + V KAV+ V K+ + N+L + + ++ EELL EDQ + + R+
Sbjct: 680 YFDIIREMIEDQVPKAVMCLLVNYCKDSVQNRLVTKLYKETL--FEELLVEDQTLAQDRE 737
Query: 68 R-------YQKQSELLSKL 79
Y+K + L+S +
Sbjct: 738 LCVKSLGVYKKAATLISNI 756
>sp|P46677|TAF1_YEAST Transcription initiation factor TFIID subunit 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF1 PE=1 SV=1
Length = 1066
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 11/119 (9%)
Query: 39 QLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNRAAAASNWSD 98
Q Y + Q + +LL+ED + + +KQ +LL L R AA N
Sbjct: 942 QGYIKIKEQDKEDVNKLLEEDTSKINNLEELEKQKKLLQLELANLEKSQQRRAARQNSKR 1001
Query: 99 GGGGAESSPRTSAASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRS 157
GG + S +G D D A +R+ +RR + + G +R+
Sbjct: 1002 NGGATRT--ENSVDNGSDLAGVTDGKA---------ARNKGKNTTRRCATCGQIGHIRT 1049
>sp|P40357|SEC9_YEAST Protein transport protein SEC9 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC9 PE=1 SV=1
Length = 651
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 31 KAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSEL 75
K +E ++ + S +QST RIE + + N+ R+RYQ+++ L
Sbjct: 529 KIEEKLMREQTSQQLSQSTQRIEGAMNANNNISEVRERYQRKNVL 573
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.122 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,440,668
Number of Sequences: 539616
Number of extensions: 2704111
Number of successful extensions: 21223
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 289
Number of HSP's that attempted gapping in prelim test: 20435
Number of HSP's gapped (non-prelim): 873
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)