Query 030018
Match_columns 184
No_of_seqs 131 out of 272
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 11:24:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 99.9 4.1E-22 1.4E-26 192.0 8.7 82 3-89 684-765 (772)
2 3szr_A Interferon-induced GTP- 99.8 3.5E-21 1.2E-25 178.5 8.7 83 2-86 524-606 (608)
3 3ljb_A Interferon-induced GTP- 99.4 9.7E-14 3.3E-18 120.0 6.0 60 1-62 212-271 (271)
4 3t34_A Dynamin-related protein 85.0 0.33 1.1E-05 41.1 1.7 23 59-81 333-355 (360)
5 2rig_A Interferon-gamma; cytok 45.9 78 0.0027 25.1 7.3 72 1-81 46-122 (144)
6 3bbp_D GRIP and coiled-coil do 31.3 53 0.0018 23.3 3.8 56 29-89 13-68 (71)
7 2x2e_A Dynamin-1; nitration, h 30.8 1.1E+02 0.0036 25.6 6.3 35 52-89 314-348 (353)
8 2rqw_B 24-meric peptide from s 29.8 32 0.0011 20.1 2.0 18 164-181 7-24 (26)
9 3hyb_A RBCX protein; rubisco, 29.8 1.5E+02 0.0052 23.8 6.6 55 13-67 23-91 (155)
10 3ka1_A RBCX protein; chaperone 25.9 2.3E+02 0.0078 21.9 6.9 52 14-65 4-70 (126)
11 2py8_A Hypothetical protein RB 25.4 2.5E+02 0.0086 22.2 8.9 52 14-65 4-70 (147)
12 1d9c_A Interferon-gamma; helic 24.1 87 0.003 24.1 4.1 70 1-79 46-120 (121)
13 2oxj_A Hybrid alpha/beta pepti 23.5 63 0.0022 20.0 2.6 23 50-72 8-30 (34)
14 1oxz_A ADP-ribosylation factor 22.0 77 0.0026 25.7 3.7 57 30-86 31-91 (186)
15 3fnr_A Arginyl-tRNA synthetase 21.7 2E+02 0.007 25.8 6.7 68 4-83 379-446 (464)
16 2cr7_A Paired amphipathic heli 21.3 2.1E+02 0.0071 19.8 5.6 24 4-28 12-35 (80)
17 1naf_A ADP-ribosylation factor 20.3 1.8E+02 0.006 23.0 5.4 56 30-85 15-74 (158)
18 2yy0_A C-MYC-binding protein; 20.2 1E+02 0.0035 20.2 3.3 33 46-78 15-47 (53)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.86 E-value=4.1e-22 Score=191.96 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=72.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 030018 3 QEVRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQ 82 (184)
Q Consensus 3 ~~V~SYf~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~e~~~l~eLL~Edp~I~~RRe~c~k~L~~LkkA~~~ 82 (184)
.+|+|||+||+|+|.|+|||||||||||++|+.|+.+|+.+||+.+ ++++||+|++++++||++|++|+.+|++|
T Consensus 684 ~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ly~~~--~~~~lm~Es~~~~~~r~~~~~~~~~l~~a--- 758 (772)
T 3zvr_A 684 NLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCG--DQNTLMEESAEQAQRRDEMLRMYHALKEA--- 758 (772)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTC--CTTTTTCCCHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CHHHHHhcCHHHHHHHHHHHHHHHHHHHH---
Confidence 4799999999999999999999999999999999999999999996 69999999999999999997777666666
Q ss_pred Hhhhhhh
Q 030018 83 LSIHDNR 89 (184)
Q Consensus 83 Lsi~~~~ 89 (184)
|.+++++
T Consensus 759 ~~ii~~i 765 (772)
T 3zvr_A 759 LSIIGDI 765 (772)
T ss_dssp HHHHC--
T ss_pred HHHHHhc
Confidence 5556666
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.84 E-value=3.5e-21 Score=178.54 Aligned_cols=83 Identities=11% Similarity=0.225 Sum_probs=79.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 030018 2 SQEVRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTR 81 (184)
Q Consensus 2 ~~~V~SYf~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~e~~~l~eLL~Edp~I~~RRe~c~k~L~~LkkA~~ 81 (184)
..+|.|||+||+|+|+|+|||+||||||+++++.||.+|++.||+.+ .+++||+|||+|++||++|++++++|++|.+
T Consensus 524 ~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~~~~--~~~~ll~E~~~~~~~R~~l~~~~~~L~~A~~ 601 (608)
T 3szr_A 524 FQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKD--TYSWLLKERSDTSDKRKFLKERLARLTQARR 601 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCHH--HHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcch--hHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999875 7999999999999999999999999999999
Q ss_pred HHhhh
Q 030018 82 QLSIH 86 (184)
Q Consensus 82 ~Lsi~ 86 (184)
.|..|
T Consensus 602 ~l~~~ 606 (608)
T 3szr_A 602 RLAQF 606 (608)
T ss_dssp HHHTC
T ss_pred HHHhc
Confidence 99876
No 3
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=99.43 E-value=9.7e-14 Score=120.00 Aligned_cols=60 Identities=8% Similarity=0.217 Sum_probs=54.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHhhcCHHH
Q 030018 1 MSQEVRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNV 62 (184)
Q Consensus 1 ~~~~V~SYf~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~e~~~l~eLL~Edp~I 62 (184)
|.++|.+||+||+++|+|+|||+|+++||+.+++.||.+|+..||..+ .++.||+||+++
T Consensus 212 i~~~l~sYf~i~~~rl~d~IP~~I~~~ll~~~~~~lQ~~ml~~l~~~~--~~~~LL~E~~d~ 271 (271)
T 3ljb_A 212 IFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKD--TYSWLLKERSDT 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSCGG--GHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhchh--hHHHHhcCCCCC
Confidence 456899999999999999999999999999999999999999999986 799999999975
No 4
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=85.02 E-value=0.33 Score=41.12 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 030018 59 DQNVKRRRDRYQKQSELLSKLTR 81 (184)
Q Consensus 59 dp~I~~RRe~c~k~L~~LkkA~~ 81 (184)
||++++||+.|.++|++|+.|..
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~ 355 (360)
T 3t34_A 333 DPAIMERRSAISKRLELYRAAQS 355 (360)
T ss_dssp ----CCCTTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999998864
No 5
>2rig_A Interferon-gamma; cytokine; 2.30A {Oryctolagus cuniculus} SCOP: a.26.1.3
Probab=45.85 E-value=78 Score=25.11 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=36.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHh-----hcCHHHHHHHHHHHHHHHH
Q 030018 1 MSQEVRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELL-----QEDQNVKRRRDRYQKQSEL 75 (184)
Q Consensus 1 ~~~~V~SYf~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~e~~~l~eLL-----~Edp~I~~RRe~c~k~L~~ 75 (184)
|||-|+=||.|.-.-..+. +|---| ...|++| +...+......++.++ +.+..++ .|+++.+...+
T Consensus 46 ~SqIvs~Y~klF~~m~~~q---~iq~s~-~~Ik~~L----~~~~f~~~~~kl~d~~~L~~i~vnD~~V-QrKAi~EL~~V 116 (144)
T 2rig_A 46 QSQIVSFYFKLFDNLKDHE---VIKKSM-ESIKEDI----FVKFFNSNLTKMDDFQNLTRISVDDRLV-QRKAVSELSNV 116 (144)
T ss_pred HHHHHHHHHHHHHHhccCH---HHHHHH-HHHHHHH----HHHHccCcHHHHHHHHHHHhccCCcHHH-HHHHHHHHHHH
Confidence 5788888998865333222 222222 3444454 4444444444455544 2333333 46666666666
Q ss_pred HHHHHH
Q 030018 76 LSKLTR 81 (184)
Q Consensus 76 LkkA~~ 81 (184)
|.+|..
T Consensus 117 ~~~lS~ 122 (144)
T 2rig_A 117 LNFLSP 122 (144)
T ss_pred HHHhCc
Confidence 655543
No 6
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=31.34 E-value=53 Score=23.33 Aligned_cols=56 Identities=27% Similarity=0.381 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhcchHhHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 030018 29 VEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNR 89 (184)
Q Consensus 29 Vn~sKe~Lq~~L~s~LY~~e~~~l~eLL~Edp~I~~RRe~c~k~L~~LkkA~~~Lsi~~~~ 89 (184)
+.-+++.|...|-..= + ..+-+.+||.|++....| +.+++++||.=.+.|.....|
T Consensus 13 ~~~s~eel~~~L~~~~-k-~~~Hl~~LL~EsEatnar---L~eq~~lLK~EIRRlERnqeR 68 (71)
T 3bbp_D 13 AEFTKEELVQKLSSTT-K-SADHLNGLLRETEATNAI---LMEQIKLLKSEIRRLERNQER 68 (71)
T ss_dssp -----------------C-TTSHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTC--
T ss_pred ccCCHHHHHHHHHHHH-H-HHHHHHHHHHhccchHHH---HHHHHHHHHHHHHHHHhhHhh
Confidence 3446666666654433 2 234789999999998876 777799999988888766554
No 7
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=30.78 E-value=1.1e+02 Score=25.59 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=20.1
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 030018 52 IEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNR 89 (184)
Q Consensus 52 l~eLL~Edp~I~~RRe~c~k~L~~LkkA~~~Lsi~~~~ 89 (184)
+++...+++.-..||..+ +.++.+-.+.+++++++
T Consensus 314 ~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~ 348 (353)
T 2x2e_A 314 YKNFRPDKHGTDSRVDEM---LRMYHALKEALSIIGNI 348 (353)
T ss_dssp HHHHCCCSSSCCHHHHHH---HHHHHHHHHHHHHCC--
T ss_pred ccCCCCCchhhhhHHHHH---HHHHHHHHHHHHHhcCc
Confidence 444444555444556666 56666667777788877
No 8
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=29.82 E-value=32 Score=20.15 Aligned_cols=18 Identities=39% Similarity=0.730 Sum_probs=13.6
Q ss_pred cCCCCCCCCCCCCCCCCC
Q 030018 164 RRTPNRVPPPPPPTQSGS 181 (184)
Q Consensus 164 ~~~~~r~~~~~~~~~~~~ 181 (184)
+-.|.|+.|-||++++.+
T Consensus 7 KFiPsRPAPKPP~s~t~s 24 (26)
T 2rqw_B 7 KFIPSRPAPKPPSSASAS 24 (26)
T ss_dssp SSCCSSCCCCCSSCSCCC
T ss_pred ccccCCCCCCCCCCCccc
Confidence 678999988888766543
No 9
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C
Probab=29.79 E-value=1.5e+02 Score=23.76 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh-------hcchHhHHHHhhcCHHHHHHHH
Q 030018 13 LNSLATNVSKAVVLCQVEKAKEDMLNQLYSS-------VG-------AQSTARIEELLQEDQNVKRRRD 67 (184)
Q Consensus 13 rk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~-------LY-------~~e~~~l~eLL~Edp~I~~RRe 67 (184)
.|.|+.-|=|.++.++-=+|-+.++.+|+.- || +....=++.|++|+++++.|=-
T Consensus 23 ~k~iakDtak~L~~YfTYqAvr~VLaQL~EtNP~~y~wL~~F~s~~iqDGe~fl~~L~~E~~~LA~RIM 91 (155)
T 3hyb_A 23 LKQIAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSAGKVQDGEKYIEELFLEKPDLALRIM 91 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCSSHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCcccHHHHHHHHHhhCHHHHHHHH
Confidence 3677777888888888877777777666542 11 1112347899999999877633
No 10
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=25.87 E-value=2.3e+02 Score=21.93 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh--------hcchHhHHHHhhcCHHHHHH
Q 030018 14 NSLATNVSKAVVLCQVEKAKEDMLNQLYSS-------VG--------AQSTARIEELLQEDQNVKRR 65 (184)
Q Consensus 14 k~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~-------LY--------~~e~~~l~eLL~Edp~I~~R 65 (184)
|.|+.-|=|.++.++-=+|-..++.+|+.- || +....=+..|++|+++++.|
T Consensus 4 k~ia~Dtak~L~~yfTY~Avr~Vl~QL~E~np~~~~wL~~F~~~~~~~DGe~fl~~L~~E~~~LA~R 70 (126)
T 3ka1_A 4 KHIAKQTTKTLISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFR 70 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCccHHHHHHHHHhhCHHHHHH
Confidence 566666677777777666666655554432 11 11223468999999988766
No 11
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=25.41 E-value=2.5e+02 Score=22.16 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHh--------hcchHhHHHHhhcCHHHHHH
Q 030018 14 NSLATNVSKAVVLCQVEKAKEDMLNQL-------YSSVG--------AQSTARIEELLQEDQNVKRR 65 (184)
Q Consensus 14 k~I~D~VPKAIMh~LVn~sKe~Lq~~L-------~s~LY--------~~e~~~l~eLL~Edp~I~~R 65 (184)
|.|.+-+=|+++.++-=+|-+.++.+| |.-|+ +...+=+..||+|+++++.|
T Consensus 4 k~~~kdaAk~L~~yfTy~AvR~VL~QL~EtNP~~y~wL~~Fl~~npl~DGd~fL~~Lmre~~~LAlR 70 (147)
T 2py8_A 4 KHIAQATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKELVLR 70 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCSSHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcCCCccHHHHHHHHHhhCHHHHHH
Confidence 445555555555555555555555544 33333 11223478899999998766
No 12
>1d9c_A Interferon-gamma; helical homodimer, immune system; 2.00A {Bos taurus} SCOP: a.26.1.3 PDB: 1d9g_A 1rfb_A
Probab=24.07 E-value=87 Score=24.14 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=35.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHh-----hcCHHHHHHHHHHHHHHHH
Q 030018 1 MSQEVRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELL-----QEDQNVKRRRDRYQKQSEL 75 (184)
Q Consensus 1 ~~~~V~SYf~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~e~~~l~eLL-----~Edp~I~~RRe~c~k~L~~ 75 (184)
|||-|+=||.|.- ++.| -|. |--- +...|++| +...+......++.++ +.+...+ .|+++.+...+
T Consensus 46 ~SqIvs~Y~klF~-~m~~-~q~-iq~s-~~~Ik~~l----~~~~f~~~~~kl~~~~~L~~i~vnd~~V-QrKAi~EL~~V 116 (121)
T 1d9c_A 46 QSQIVSFYFKLFE-NLKD-NQV-IQRS-MDIIKQDM----FQKFLNGSSEKLEDFKKLIQIPVDDLQI-QRKAINELIKV 116 (121)
T ss_dssp HHHHHHHHHHHHH-TTTT-CTT-THHH-HHHHHHHH----HHHHSTTCHHHHHHHHHHHTCCSSCHHH-HHHHHHTHHHH
T ss_pred HHHHHHHHHHHHH-Hhcc-CHH-HHHH-HHHHHHHH----HHHHccCcHHHHHHHHHHHhccCCcHHH-HHHHHHHHHHH
Confidence 5778888998864 2333 111 1111 14445554 5555554444455554 2333333 46777666666
Q ss_pred HHHH
Q 030018 76 LSKL 79 (184)
Q Consensus 76 LkkA 79 (184)
|.+|
T Consensus 117 ~~~l 120 (121)
T 1d9c_A 117 MNDL 120 (121)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6554
No 13
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=23.51 E-value=63 Score=19.98 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=15.8
Q ss_pred HhHHHHhhcCHHHHHHHHHHHHH
Q 030018 50 ARIEELLQEDQNVKRRRDRYQKQ 72 (184)
Q Consensus 50 ~~l~eLL~Edp~I~~RRe~c~k~ 72 (184)
++.++||.|..+...+=.+++.+
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Confidence 46788888887777665555443
No 14
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=22.04 E-value=77 Score=25.70 Aligned_cols=57 Identities=23% Similarity=0.280 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhhcch----HhHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030018 30 EKAKEDMLNQLYSSVGAQST----ARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIH 86 (184)
Q Consensus 30 n~sKe~Lq~~L~s~LY~~e~----~~l~eLL~Edp~I~~RRe~c~k~L~~LkkA~~~Lsi~ 86 (184)
+..|..++.+|+.+..-++. ..+..|..||+.-.++..+...-|+..+.-.+.|++.
T Consensus 31 deekSa~L~eLirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EM 91 (186)
T 1oxz_A 31 DEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEM 91 (186)
T ss_dssp CTTHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566788888877433322 2455566676665666666655566666666666443
No 15
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=21.66 E-value=2e+02 Score=25.84 Aligned_cols=68 Identities=4% Similarity=-0.027 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 030018 4 EVRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQL 83 (184)
Q Consensus 4 ~V~SYf~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~e~~~l~eLL~Edp~I~~RRe~c~k~L~~LkkA~~~L 83 (184)
.+..|-++|.+...+.=|..|...+.+-++ ..+.+|... ..|.|++++..-|=.+-+.. .|+++...|
T Consensus 379 ~L~~~~~~v~~a~~~~ep~~i~~yL~~La~--~~n~fY~~~---------~vl~~~~~~~~aRL~L~~a~-vL~~gL~lL 446 (464)
T 3fnr_A 379 EALNLKAVLNDAFEARALQKIPDYLKNLAA--NFHKFYNEN---------KVVGSANENDLLKLFSLVAL-SIKTAFSLM 446 (464)
T ss_dssp HHHTHHHHHHHHHHHTCTTHHHHHHHHHHH--HHHHHHHHC---------CCTTSTTHHHHHHHHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHHHhC---------cCCCCCHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 345667777777777777777777666553 344444432 24566667777777766555 666666555
No 16
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=21.32 E-value=2.1e+02 Score=19.76 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 030018 4 EVRGYFEAVLNSLATNVSKAVVLCQ 28 (184)
Q Consensus 4 ~V~SYf~IVrk~I~D~VPKAIMh~L 28 (184)
+-.+|++.|+....|. |-..-.||
T Consensus 12 dA~~yl~~VK~rF~~~-p~~Y~~FL 35 (80)
T 2cr7_A 12 DALTYLDQVKIRFGSD-PATYNGFL 35 (80)
T ss_dssp CSHHHHHHHHHHTSSC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHccC-hHHHHHHH
Confidence 3468999999999885 65544444
No 17
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=20.31 E-value=1.8e+02 Score=22.98 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhcch----HhHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030018 30 EKAKEDMLNQLYSSVGAQST----ARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSI 85 (184)
Q Consensus 30 n~sKe~Lq~~L~s~LY~~e~----~~l~eLL~Edp~I~~RRe~c~k~L~~LkkA~~~Lsi 85 (184)
+..|..++.+|+.+.--++. ..+..|..||+.-.++..+...-|+..+.-.+.|++
T Consensus 15 ~eeks~~L~~Lirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~E 74 (158)
T 1naf_A 15 DEEKSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTE 74 (158)
T ss_dssp CCHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788888877433322 245666777766566666555555555555555543
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.18 E-value=1e+02 Score=20.16 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=24.1
Q ss_pred hcchHhHHHHhhcCHHHHHHHHHHHHHHHHHHH
Q 030018 46 AQSTARIEELLQEDQNVKRRRDRYQKQSELLSK 78 (184)
Q Consensus 46 ~~e~~~l~eLL~Edp~I~~RRe~c~k~L~~Lkk 78 (184)
.++..+++.|-.|..+..++-+++++.++-|++
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444557899999998888888888766665554
Done!