Query 030018
Match_columns 184
No_of_seqs 131 out of 272
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 11:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030018.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030018hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ykhb1 a.252.1.1 (B:2-130) RN 48.1 42 0.003 23.8 8.5 65 20-86 57-128 (129)
2 d1iq0a1 a.27.1.1 (A:467-592) A 31.2 46 0.0034 22.6 5.5 58 4-68 42-102 (126)
3 d3besl1 a.26.1.3 (L:0-126) Int 22.3 53 0.0039 23.7 4.5 70 1-79 47-121 (127)
4 d2id3a2 a.121.1.1 (A:81-203) P 22.1 1E+02 0.0075 20.3 7.4 32 3-34 8-39 (123)
5 d3bb9a1 d.17.4.16 (A:27-147) U 21.3 17 0.0013 23.0 1.4 30 30-59 2-31 (121)
6 d2f05a1 a.59.1.1 (A:1-85) Sin3 20.0 1.1E+02 0.0077 19.6 5.7 17 5-22 10-26 (85)
7 d1d9ca_ a.26.1.3 (A:) Interfer 18.4 68 0.005 22.8 4.3 70 1-79 46-120 (121)
8 d1nkua_ a.96.1.4 (A:) 3-Methyl 18.2 23 0.0017 26.9 1.7 43 43-89 67-109 (187)
9 d2pv7a1 a.100.1.12 (A:244-371) 18.0 1.3E+02 0.0097 20.0 7.5 62 19-83 14-91 (128)
10 d1v89a_ b.55.1.1 (A:) Rho-GTPa 17.8 22 0.0016 22.5 1.3 17 114-130 100-116 (118)
No 1
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=48.10 E-value=42 Score=23.77 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc------chHhHHHHhhcCHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 030018 20 VSKAVVLCQVEKAKEDMLNQLYSSVGAQ------STARIEELLQEDQNVKRRRDR-YQKQSELLSKLTRQLSIH 86 (184)
Q Consensus 20 VPKAIMh~LVn~sKe~Lq~~L~s~LY~~------e~~~l~eLL~Edp~I~~RRe~-c~k~L~~LkkA~~~Lsi~ 86 (184)
-+|..-.-+|.++|. ...|+.+|=.. ....+.+|-+|...+.++|++ +++.=++|+++..+|..|
T Consensus 57 ~~~elA~dii~kakq--Id~LI~sLP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i~~i 128 (129)
T d1ykhb1 57 TIDELSTDIILKTRQ--INKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDF 128 (129)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh--HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777776 35677776432 134678999999999977754 444556667777776543
No 2
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}
Probab=31.23 E-value=46 Score=22.64 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhH---HHHhhcCHHHHHHHHH
Q 030018 4 EVRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARI---EELLQEDQNVKRRRDR 68 (184)
Q Consensus 4 ~V~SYf~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~e~~~l---~eLL~Edp~I~~RRe~ 68 (184)
.+..|-++|.+...+.=|-.|.++|-+ +...|.+.|.... .+ ...+.|++++...|-.
T Consensus 42 ~l~~~p~vl~~a~~~~~Ph~l~~yl~~------La~~F~~fY~~~~-~~~~~~~i~~~~~~~~~~RL~ 102 (126)
T d1iq0a1 42 DLLDFEEAVLEAAEERTPHVLAQYLLD------LAASWNAYYNARE-NGQPATPVLTAPEGLRELRLS 102 (126)
T ss_dssp HHTTHHHHHHHHHHHTCHHHHHHHHHH------HHHHHHHHHHCEE-TTEESSCSTTSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH------HHHHHHHHHHhcc-cccccccccCCCHHHHHHHHH
Confidence 355678888888888888777777654 3445666665321 11 2256677777766544
No 3
>d3besl1 a.26.1.3 (L:0-126) Interferon-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.30 E-value=53 Score=23.75 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=35.3
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHhh-----cCHHHHHHHHHHHHHHHH
Q 030018 1 MSQEVRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQ-----EDQNVKRRRDRYQKQSEL 75 (184)
Q Consensus 1 ~~~~V~SYf~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~e~~~l~eLL~-----Edp~I~~RRe~c~k~L~~ 75 (184)
|||-|.-||.|-- ++.|.=. |...-+.+.++|+........+.+++++. ++. ..-.|+++-+....
T Consensus 47 ~SQIVs~Y~klFe-n~k~nq~-------iq~si~~Ike~l~~~f~~~~~~K~~df~~L~ki~vnD-~~VQrKAi~EL~~V 117 (127)
T d3besl1 47 QSQIVSFYFKLFK-NFKDDQS-------IQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTD-LNVQRKAIHELIQV 117 (127)
T ss_dssp HHHHHHHHHHHHH-TTTTCST-------THHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCcccHH-------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHH
Confidence 4677888888874 3333211 33333444555555544444444555432 222 22346666555555
Q ss_pred HHHH
Q 030018 76 LSKL 79 (184)
Q Consensus 76 LkkA 79 (184)
|.++
T Consensus 118 ~~~L 121 (127)
T d3besl1 118 MAEL 121 (127)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5544
No 4
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=22.07 E-value=1e+02 Score=20.32 Aligned_cols=32 Identities=9% Similarity=0.112 Sum_probs=25.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030018 3 QEVRGYFEAVLNSLATNVSKAVVLCQVEKAKE 34 (184)
Q Consensus 3 ~~V~SYf~IVrk~I~D~VPKAIMh~LVn~sKe 34 (184)
.++..|+..+.+.+.+-...++++.++..+..
T Consensus 8 ~DL~~~l~~~~~~l~~p~~~~~~~~l~ae~~~ 39 (123)
T d2id3a2 8 EDLRANARLVVRTLDDPRQGRLFRALIAASLC 39 (123)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHhcC
Confidence 46778888888888888888888888876654
No 5
>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]}
Probab=21.30 E-value=17 Score=22.99 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhcchHhHHHHhhcC
Q 030018 30 EKAKEDMLNQLYSSVGAQSTARIEELLQED 59 (184)
Q Consensus 30 n~sKe~Lq~~L~s~LY~~e~~~l~eLL~Ed 59 (184)
..+..+++++++..+.+.+.+.+.+|+.+|
T Consensus 2 ~~a~~~v~~~~~~A~~~~D~~~~~~l~a~D 31 (121)
T d3bb9a1 2 DSAAGNVVKQFHAALQMGNEAIVRQSLAAN 31 (121)
T ss_dssp TSHHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHhhCCC
Confidence 345556666666666666666666666655
No 6
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.99 E-value=1.1e+02 Score=19.60 Aligned_cols=17 Identities=6% Similarity=0.225 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 030018 5 VRGYFEAVLNSLATNVSK 22 (184)
Q Consensus 5 V~SYf~IVrk~I~D~VPK 22 (184)
-.+|++-|+..+.|. |=
T Consensus 10 A~~yl~kVK~rf~~~-p~ 26 (85)
T d2f05a1 10 AISYVNKIKTRFLDH-PE 26 (85)
T ss_dssp HHHHHHHHHHHTTTC-HH
T ss_pred HHHHHHHHHHHHccC-HH
Confidence 457999999999875 53
No 7
>d1d9ca_ a.26.1.3 (A:) Interferon-gamma {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.41 E-value=68 Score=22.77 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=37.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHhh-----cCHHHHHHHHHHHHHHHH
Q 030018 1 MSQEVRGYFEAVLNSLATNVSKAVVLCQVEKAKEDMLNQLYSSVGAQSTARIEELLQ-----EDQNVKRRRDRYQKQSEL 75 (184)
Q Consensus 1 ~~~~V~SYf~IVrk~I~D~VPKAIMh~LVn~sKe~Lq~~L~s~LY~~e~~~l~eLL~-----Edp~I~~RRe~c~k~L~~ 75 (184)
|||-|.-|+.|-- ++.|.-| +.+.-+.+..+|+...|..+...+++|++ .+... -+|+++.+.+..
T Consensus 46 lSqIvs~Y~kife-nl~~~~~-------~~~si~~ik~~l~~~~~~~~~~kl~dl~~L~~i~vnd~~-IQrKAlnEL~~V 116 (121)
T d1d9ca_ 46 QSQIVSFYFKLFE-NLKDNQV-------IQRSMDIIKQDMFQKFLNGSSEKLEDFKKLIQIPVDDLQ-IQRKAINELIKV 116 (121)
T ss_dssp HHHHHHHHHHHHH-TTTTCTT-------THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTCCSSCHH-HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHH-hCcccch-------hHhhHHHHHHHHHHHhccCcHHHHHHHHHHHhccCCcHH-HHHHHHHHHHHH
Confidence 4677888888874 3443322 12333344455666666666555665543 22222 346666666666
Q ss_pred HHHH
Q 030018 76 LSKL 79 (184)
Q Consensus 76 LkkA 79 (184)
|.++
T Consensus 117 ~~~l 120 (121)
T d1d9ca_ 117 MNDL 120 (121)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6554
No 8
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]}
Probab=18.18 E-value=23 Score=26.92 Aligned_cols=43 Identities=23% Similarity=0.411 Sum_probs=29.7
Q ss_pred HHhhcchHhHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 030018 43 SVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQLSIHDNR 89 (184)
Q Consensus 43 ~LY~~e~~~l~eLL~Edp~I~~RRe~c~k~L~~LkkA~~~Lsi~~~~ 89 (184)
.+..-+.+++++||+ |+.|+.-|.++ ..+...|+-.|.+....
T Consensus 67 ~vA~~~e~~ie~Ll~-d~~IIRNr~KI---~Avi~NAr~~l~i~~e~ 109 (187)
T d1nkua_ 67 KVAAMQEEDVERLVQ-DAGIIRHRGKI---QAIIGNARAYLQMEQNG 109 (187)
T ss_dssp HHHTCCHHHHHHHHT-CCSSCCCHHHH---HHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHhc-cCCeeechHHH---HHHHHHHHHHHHHHHhc
Confidence 444444568999996 77888888887 46667787777665443
No 9
>d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}
Probab=17.97 E-value=1.3e+02 Score=19.96 Aligned_cols=62 Identities=3% Similarity=0.003 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHH----------------HHHHHHHHHHhhcchHhHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 030018 19 NVSKAVVLCQVEKAKE----------------DMLNQLYSSVGAQSTARIEELLQEDQNVKRRRDRYQKQSELLSKLTRQ 82 (184)
Q Consensus 19 ~VPKAIMh~LVn~sKe----------------~Lq~~L~s~LY~~e~~~l~eLL~Edp~I~~RRe~c~k~L~~LkkA~~~ 82 (184)
.+|=.|-..|++..+. ..+-.+.+-|...+++...+++.+++++.+-++++.+ .|.+..+.
T Consensus 14 hLpH~~~~al~~~l~~~~~~~~~~~~~a~~~fr~~l~~~tRIa~~~p~lw~dI~~~N~~~~~~l~~~~~---~l~~l~~~ 90 (128)
T d2pv7a1 14 ALRHFSTFANGLHLSKQPINLANLLALSSPIYRLELAMIGRLFAQDAELYADIIMDKSENLAVIETLKQ---TYDEALTF 90 (128)
T ss_dssp HHHHHHHHHHHHHHTTSSCCHHHHHHTCCHHHHHHHHHHHHHHTSCHHHHHHHHC----CHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcchhHHHHHccHhHhhHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHH---HHHHHHHH
Confidence 4566666667665432 1122356778888888889999999987666666644 44444444
Q ss_pred H
Q 030018 83 L 83 (184)
Q Consensus 83 L 83 (184)
|
T Consensus 91 i 91 (128)
T d2pv7a1 91 F 91 (128)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.76 E-value=22 Score=22.48 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=13.5
Q ss_pred CcchHHHHHHHhCCCCC
Q 030018 114 GDDWRSAFDAAANGPVS 130 (184)
Q Consensus 114 ~~~w~~af~~~~~~~~~ 130 (184)
.++|..|+.+|++..+.
T Consensus 100 ~~~Wi~aI~~a~~~~p~ 116 (118)
T d1v89a_ 100 MEEWVKFLRRVAGSGPS 116 (118)
T ss_dssp HHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHccCCC
Confidence 36999999999876553
Done!