BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030020
MFQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFY
PQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS
KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVAS
FRFI

High Scoring Gene Products

Symbol, full name Information P value
AT1G76450 protein from Arabidopsis thaliana 1.4e-71

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030020
        (184 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2011711 - symbol:AT1G76450 species:3702 "Arabi...   724  1.4e-71   1


>TAIR|locus:2011711 [details] [associations]
            symbol:AT1G76450 species:3702 "Arabidopsis thaliana"
            [GO:0005509 "calcium ion binding" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0015979 "photosynthesis"
            evidence=IEA;RCA] [GO:0009543 "chloroplast thylakoid lumen"
            evidence=IDA] [GO:0031977 "thylakoid lumen" evidence=IDA]
            [GO:0009579 "thylakoid" evidence=IDA] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA] [GO:0000023 "maltose metabolic
            process" evidence=RCA] [GO:0006098 "pentose-phosphate shunt"
            evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0009637 "response to blue light" evidence=RCA] [GO:0009902
            "chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0010114 "response to red
            light" evidence=RCA] [GO:0010218 "response to far red light"
            evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
            evidence=RCA] [GO:0019252 "starch biosynthetic process"
            evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
            [GO:0042793 "transcription from plastid promoter" evidence=RCA]
            InterPro:IPR002683 Pfam:PF01789 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0019898 GO:GO:0005509 EMBL:AC012394
            GO:GO:0009535 GO:GO:0031977 GO:GO:0015979 EMBL:AC015450
            GO:GO:0009543 Gene3D:3.40.1000.10 InterPro:IPR016123
            SUPFAM:SSF55724 GO:GO:0009654 EMBL:BT009723 EMBL:AY084993
            EMBL:AK227301 IPI:IPI00538962 RefSeq:NP_565131.1 UniGene:At.43912
            UniGene:At.70089 ProteinModelPortal:Q9S720 STRING:Q9S720
            PaxDb:Q9S720 PRIDE:Q9S720 EnsemblPlants:AT1G76450.1 GeneID:843978
            KEGG:ath:AT1G76450 TAIR:At1g76450 eggNOG:NOG271581
            HOGENOM:HOG000029524 InParanoid:Q9S720 OMA:AKLIDSR PhylomeDB:Q9S720
            ProtClustDB:CLSN2917457 BioCyc:MetaCyc:AT1G76450-MONOMER
            Genevestigator:Q9S720 GermOnline:AT1G76450 Uniprot:Q9S720
        Length = 247

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 139/187 (74%), Positives = 157/187 (83%)

Query:     1 MFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSIT 57
             M Q+A +    P  +S A A   A+E  RVYTDE NKFEISIPQDWQ+G  EPNGFKSIT
Sbjct:    61 MLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQAEPNGFKSIT 120

Query:    58 AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 117
             AFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P GV AKLID 
Sbjct:   121 AFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDS 180

Query:   118 KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 177
             +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +EES +  S I+K 
Sbjct:   181 RASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQKT 240

Query:   178 VASFRFI 184
             V SFRFI
Sbjct:   241 VKSFRFI 247


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      184       184   0.00078  110 3  11 22  0.44    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  161 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.87u 0.09s 16.96t   Elapsed:  00:00:01
  Total cpu time:  16.87u 0.09s 16.96t   Elapsed:  00:00:01
  Start:  Fri May 10 05:31:24 2013   End:  Fri May 10 05:31:25 2013

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